Citrus Sinensis ID: 022227

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEVGSLLIFTPMIYTELVSWLEPWTAIVGHLGLHGGIL
Secondary Structure (PSIPRED)
ccccccEEEEEccccHHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHHHccccccccccccEEEEccHHHHcccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHccccccccEEEEHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccEEEEcccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEcEEEcccccEEccEEEEccEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEcccccHHHHHHHHHHHccccccccccEEEEEEccHHHHHHHHHHHHHHHccccccEEEEEEEccHHHHHccccEEEEcccccccccccccccccccHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHcccccccccEEEccHHHHHHHHHHHHHHHcccHHHEEccEEEEccccccEEEccccEEEEccEEccHHHHHccHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccEEEccEEEEcccEEEEEccccccccc
Coil and Loop (DISEMBL)
MAKEPVRVLVTGAAGQIGYALVPMIARgvmlgtdqpvilhmldippaaealnGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMvggfprkegmerkdvmsKNVSIYKAQASALeqhaapnckVLVVANPANTNALIlkefapsipaknitcltrldhnralgqiseklnvqvsDVKNVIIWgnhsssqypdvnhatvntaagekpvRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSAcdhirdwvlgtpevgsllifTPMIYTELVSWLEPWTAIVGHlglhggil
Flexible Loop (DISEMBL)
MAKEPVRVLVtgaagqigyALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNhsssqypdvnHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEVGSLLIFTPMIYTELVSWLEPWTAIVGHLGLHGGIL
Low Complexity Region (SEG)
MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKlssalsaassaCDHIRDWVLGTPEVGSLLIFTPMIYTELVSWLEPWTAIVghlglhggIL
Disordered region (IsUnstruct)
*****VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPR************NVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEVGSLLIFTPMIYTELVSWLEPWTAIVGHLGLHG***
Disordered Region (DISOPRED)
***EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEVGSLLIFTPMIYTELVSWLEPWTAIVGHLGLHGGIL
Disordered Region (DISEMBL)
MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKA*************CDHIRDWVLGTPEVGSLLIFTPMIYTELVSWLEPWTAIVGHLGLHGGIL
Disordered Region (DISPRO)
***EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSALSA*SSACDHIRDWVLGTPEVGSLLIFTPMIYTELVSWLEPWTAIVGHLGLHGGIL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEVGSLLIFTPMIYTELVSWLEPWTAIVGHLGLHGGIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	300	2.2.26 [Sep-21-2011]
Q08062	332	Malate dehydrogenase, cyt	N/A	no	0.88	0.795	0.943	1e-140
P93819	332	Malate dehydrogenase, cyt	yes	no	0.88	0.795	0.928	1e-138
O48905	332	Malate dehydrogenase, cyt	N/A	no	0.88	0.795	0.928	1e-137
P57106	332	Malate dehydrogenase, cyt	no	no	0.88	0.795	0.928	1e-137
Q7XDC8	332	Malate dehydrogenase, cyt	yes	no	0.88	0.795	0.916	1e-136
O24047	332	Malate dehydrogenase, cyt	N/A	no	0.88	0.795	0.928	1e-135
Q9SML8	332	Malate dehydrogenase, cyt	N/A	no	0.88	0.795	0.920	1e-134
P11708	334	Malate dehydrogenase, cyt	yes	no	0.87	0.781	0.613	8e-90
P40925	334	Malate dehydrogenase, cyt	yes	no	0.87	0.781	0.605	2e-89
O88989	334	Malate dehydrogenase, cyt	yes	no	0.87	0.781	0.613	5e-89

>sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2

 Score =  497 bits (1280), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/264 (94%), Positives = 255/264 (96%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           MAKEP+RVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1   MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           AAFPLLKGVVATTD VEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE H
Sbjct: 61  AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAH 120

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
           AAPNCKVLVVANPANTNALILKEFAPSIP KN+TCLTRLDHNRALGQISE+LNVQVSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLNVQVSDVK 180

Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
           NVIIWGNHSSSQYPDVNHATV T+ GEKPVRELV DD WLNGEFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHATVKTSTGEKPVRELVSDDEWLNGEFITTVQQRGAAIIKARK 240

Query: 241 LSSALSAASSACDHIRDWVLGTPE 264
            SSALSAASSACDHIRDWVLGTPE
Sbjct: 241 FSSALSAASSACDHIRDWVLGTPE 264

Zea mays (taxid: 4577)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|P93819|MDHC1_ARATH Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2

 Score =  489 bits (1260), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/264 (92%), Positives = 258/264 (97%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           MAKEPVRVLVTGAAGQIGYALVPMIARG+MLG DQPVILHMLDIPPAAEALNGVKMEL+D
Sbjct: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPPAAEALNGVKMELID 60

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           AAFPLLKGVVATTDAVE CTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QA+ALE+H
Sbjct: 61  AAFPLLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKH 120

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
           AAPNCKVLVVANPANTNALILKEFAPSIP KNI+CLTRLDHNRALGQISE+L+V VSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLSVPVSDVK 180

Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
           NVIIWGNHSSSQYPDVNHA V T++GEKPVRELVKDDAWL+GEFI+TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHAKVQTSSGEKPVRELVKDDAWLDGEFISTVQQRGAAIIKARK 240

Query: 241 LSSALSAASSACDHIRDWVLGTPE 264
           LSSALSAASSACDHIRDWVLGTPE
Sbjct: 241 LSSALSAASSACDHIRDWVLGTPE 264

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1

 Score =  488 bits (1255), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 245/264 (92%), Positives = 257/264 (97%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           MAK+PVRVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDI PAAE+LNGVKMELVD
Sbjct: 1   MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIAPAAESLNGVKMELVD 60

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           AAFPLLKGVVATTD VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE+H
Sbjct: 61  AAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
           AA NCKVLVVANPANTNALILKEFAPSIP +NI+CLTRLDHNRALGQISE+LNVQVSDVK
Sbjct: 121 AAANCKVLVVANPANTNALILKEFAPSIPERNISCLTRLDHNRALGQISERLNVQVSDVK 180

Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
           NVIIWGNHSS+QYPDVNHATVNT AGEKPVR+LV DDAWLNGEFI+TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVNTPAGEKPVRQLVSDDAWLNGEFISTVQQRGAAIIKARK 240

Query: 241 LSSALSAASSACDHIRDWVLGTPE 264
           LSSALSAAS+ACDHIRDWVLGTP+
Sbjct: 241 LSSALSAASAACDHIRDWVLGTPQ 264

Medicago sativa (taxid: 3879)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P57106|MDHC2_ARATH Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1

 Score =  486 bits (1252), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 245/264 (92%), Positives = 257/264 (97%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           MAKEPVRVLVTGAAGQIGYALVPMIARG+MLG DQPVILHMLDIP AAEALNGVKMELVD
Sbjct: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPFAAEALNGVKMELVD 60

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           AAFPLLKGVVATTDAVEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE+H
Sbjct: 61  AAFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
           AAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRALGQ+SE+L+V VSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQVSERLSVPVSDVK 180

Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
           NVIIWGNHSS+QYPDVNHATV T+ GEKPVRELVK+D WLNGEFI+TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVKTSVGEKPVRELVKNDEWLNGEFISTVQQRGAAIIKARK 240

Query: 241 LSSALSAASSACDHIRDWVLGTPE 264
           LSSALSAASSACDHIRDWV+GTPE
Sbjct: 241 LSSALSAASSACDHIRDWVVGTPE 264

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q7XDC8|MDHC_ORYSJ Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3

 Score =  484 bits (1246), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/264 (91%), Positives = 252/264 (95%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           MAKEP+RVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDIPPA E+LNG+KMELVD
Sbjct: 1   MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPATESLNGLKMELVD 60

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           AAFPLLKG+VATTD VEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE H
Sbjct: 61  AAFPLLKGIVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAH 120

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
           AAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRALGQISEKLNVQV+DVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVQVTDVK 180

Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
           N IIWGNHSS+QYPDVNHATV T +GEKPVRELV DD WLN EFI+TVQQRGAAIIKARK
Sbjct: 181 NAIIWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDEWLNTEFISTVQQRGAAIIKARK 240

Query: 241 LSSALSAASSACDHIRDWVLGTPE 264
            SSALSAASSACDHIRDWVLGTPE
Sbjct: 241 QSSALSAASSACDHIRDWVLGTPE 264

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1

 Score =  482 bits (1240), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 245/264 (92%), Positives = 253/264 (95%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           MA EP+RVLVTGAAGQIGYALVPMIARG+MLG +QPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1   MAVEPLRVLVTGAAGQIGYALVPMIARGIMLGANQPVILHMLDIPPAAEALNGVKMELVD 60

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           AAFPLLKGVVATTDA EAC GVN+AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH
Sbjct: 61  AAFPLLKGVVATTDAAEACKGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
           AAPNCKVLVVANPANTNALILKEFAPSIP KNI+CLTRLDHNRALGQISE+LNVQVSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLNVQVSDVK 180

Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
           NVIIWGNHSS+QYPDVNHATV T   +KPVRELV DDAWLNGEFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVKTQGVDKPVRELVADDAWLNGEFITTVQQRGAAIIKARK 240

Query: 241 LSSALSAASSACDHIRDWVLGTPE 264
           LSSALSAASSACDHI DWVLGTPE
Sbjct: 241 LSSALSAASSACDHIHDWVLGTPE 264

Mesembryanthemum crystallinum (taxid: 3544)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9SML8|MDHC_BETVU Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1

 Score =  476 bits (1226), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 243/264 (92%), Positives = 250/264 (94%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           MA EP+RVLVTGAAGQIGYALVPMIARGVMLG +QPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1   MAVEPLRVLVTGAAGQIGYALVPMIARGVMLGANQPVILHMLDIPPAAEALNGVKMELVD 60

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           AAFPLLKGVVATTD  EAC GVN+AVMVGGFPRKEGMERKDVM KNVSIYK+QASALEQ+
Sbjct: 61  AAFPLLKGVVATTDVAEACKGVNVAVMVGGFPRKEGMERKDVMPKNVSIYKSQASALEQY 120

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
           AAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRALGQISE+LN QVSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLNAQVSDVK 180

Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
           NVIIWGNHSSSQYPDVN  TV T +GEK VRELV DDAWLNGEFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNPCTVKTGSGEKAVRELVADDAWLNGEFITTVQQRGAAIIKARK 240

Query: 241 LSSALSAASSACDHIRDWVLGTPE 264
           LSSALSAASSACDHIRDWVLGTPE
Sbjct: 241 LSSALSAASSACDHIRDWVLGTPE 264

Beta vulgaris (taxid: 161934)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P11708|MDHC_PIG Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1 SV=4

 Score =  330 bits (846), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 160/261 (61%), Positives = 194/261 (74%)

Query: 4   EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
           EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A 
Sbjct: 3   EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 62

Query: 64  PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
           PLLK V+AT     A   +++A++VG  PR++GMERKD++  NV I+K Q +AL+++A  
Sbjct: 63  PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 122

Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
           + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVI
Sbjct: 123 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVI 182

Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS 243
           IWGNHSS+QYPDVNHA V   A E  V E VKDD+WL GEFITTVQQRGAA+IKARKLSS
Sbjct: 183 IWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 242

Query: 244 ALSAASSACDHIRDWVLGTPE 264
           A+SAA + CDH+RD   GTPE
Sbjct: 243 AMSAAKAICDHVRDIWFGTPE 263

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P40925|MDHC_HUMAN Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4

 Score =  329 bits (843), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 158/261 (60%), Positives = 195/261 (74%)

Query: 4   EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
           EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A 
Sbjct: 3   EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 62

Query: 64  PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
           PLLK V+AT     A   +++A++VG  PR+EGMERKD++  NV I+K+Q +AL+++A  
Sbjct: 63  PLLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKK 122

Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
           + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V  +DVKNVI
Sbjct: 123 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVI 182

Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS 243
           IWGNHSS+QYPDVNHA V     E  V E +KDD+WL GEF+TTVQQRGAA+IKARKLSS
Sbjct: 183 IWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSS 242

Query: 244 ALSAASSACDHIRDWVLGTPE 264
           A+SAA + CDH+RD   GTPE
Sbjct: 243 AMSAAKAICDHVRDIWFGTPE 263

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|O88989|MDHC_RAT Malate dehydrogenase, cytoplasmic OS=Rattus norvegicus GN=Mdh1 PE=1 SV=3

 Score =  327 bits (839), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 160/261 (61%), Positives = 193/261 (73%)

Query: 4   EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
           EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A 
Sbjct: 3   EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 62

Query: 64  PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
           PLL+ V+AT     A   +++AV+VG  PR+EGMERKD++  NV I+K+Q +ALE++A  
Sbjct: 63  PLLQDVIATDKEEVAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKSQGAALEKYAKK 122

Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
           + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVI
Sbjct: 123 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTADDVKNVI 182

Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS 243
           IWGNHSS+QYPDVNHA V     E  V E +KDD+WL GEFITTVQQRGAA+IKARKLSS
Sbjct: 183 IWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSS 242

Query: 244 ALSAASSACDHIRDWVLGTPE 264
           A+SAA +  DHIRD   GTPE
Sbjct: 243 AMSAAKAISDHIRDIWFGTPE 263

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
211906490	332	malate dehydrogenase [Gossypium hirsutum	0.88	0.795	0.969	1e-140
414871065	282	TPA: malate dehydrogenase4 [Zea mays]	0.93	0.989	0.896	1e-139
162464321	332	malate dehydrogenase, cytoplasmic [Zea m	0.88	0.795	0.943	1e-138
83283965	332	malate dehydrogenase-like protein [Solan	0.88	0.795	0.950	1e-138
10798652	332	malate dehydrogenase [Nicotiana tabacum]	0.88	0.795	0.950	1e-138
187235712	332	cytoplasmic malate dehydrogennase [Zea m	0.88	0.795	0.939	1e-138
347516612	332	Cr611 [Catharanthus roseus]	0.88	0.795	0.939	1e-137
320449084	332	malate dehydrogenase [Zea mays]	0.88	0.795	0.931	1e-137
242039369	332	hypothetical protein SORBIDRAFT_01g01928	0.88	0.795	0.939	1e-137
226503019	332	malate dehydrogenase, cytoplasmic [Zea m	0.88	0.795	0.931	1e-137

>gi|211906490|gb|ACJ11738.1| malate dehydrogenase [Gossypium hirsutum]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 256/264 (96%), Positives = 260/264 (98%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           MAKEPVRVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           AAFPLLKGVVATTD VEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALEQH
Sbjct: 61  AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEQH 120

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
           AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180

Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
           NVIIWGNHSSSQYPDVNHATV T +GEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHATVMTPSGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240

Query: 241 LSSALSAASSACDHIRDWVLGTPE 264
           LSSALSAAS+ACDHIRDWVLGTPE
Sbjct: 241 LSSALSAASAACDHIRDWVLGTPE 264

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414871065|tpg|DAA49622.1| TPA: malate dehydrogenase4 [Zea mays]

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 251/280 (89%), Positives = 262/280 (93%), Gaps = 1/280 (0%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           MAKEP+RVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1   MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           AAFPLLKGVVATTD VEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE H
Sbjct: 61  AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAH 120

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
           AAPNCKVLVVANPANTNALILKEFAPSIP KN+TCLTRLDHNRALGQISE+LNVQVSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLNVQVSDVK 180

Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
           NVIIWGNHSSSQYPDVNHATV T+ GEKPVRELV DD WLNGEFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHATVKTSTGEKPVRELVSDDEWLNGEFITTVQQRGAAIIKARK 240

Query: 241 LSSALSAASSACDHIRDWVLGTPEVGSLLIFTPMIYTELV 280
            SSALSAASSACDHIRDWVLGTPE  +L++ T  +    +
Sbjct: 241 FSSALSAASSACDHIRDWVLGTPEC-TLMVHTVFLLDSFI 279

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|162464321|ref|NP_001105603.1| malate dehydrogenase, cytoplasmic [Zea mays] gi|18202485|sp|Q08062.2|MDHC_MAIZE RecName: Full=Malate dehydrogenase, cytoplasmic gi|2286153|gb|AAB64290.1| cytoplasmic malate dehydrogenase [Zea mays] gi|238006868|gb|ACR34469.1| unknown [Zea mays] gi|414871066|tpg|DAA49623.1| TPA: malate dehydrogenase4 [Zea mays]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 249/264 (94%), Positives = 255/264 (96%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           MAKEP+RVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1   MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           AAFPLLKGVVATTD VEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE H
Sbjct: 61  AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAH 120

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
           AAPNCKVLVVANPANTNALILKEFAPSIP KN+TCLTRLDHNRALGQISE+LNVQVSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLNVQVSDVK 180

Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
           NVIIWGNHSSSQYPDVNHATV T+ GEKPVRELV DD WLNGEFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHATVKTSTGEKPVRELVSDDEWLNGEFITTVQQRGAAIIKARK 240

Query: 241 LSSALSAASSACDHIRDWVLGTPE 264
            SSALSAASSACDHIRDWVLGTPE
Sbjct: 241 FSSALSAASSACDHIRDWVLGTPE 264

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83283965|gb|ABC01890.1| malate dehydrogenase-like protein [Solanum tuberosum]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 251/264 (95%), Positives = 259/264 (98%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           MAK+PVRVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1   MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           AAFPLLKGVVATTDAVEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE+H
Sbjct: 61  AAFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
           AAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRALGQISE+L+VQVSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLSVQVSDVK 180

Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
           NVIIWGNHSSSQYPDVNHATV T AG+KPVRELV DDAWLNGEFI+TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHATVTTPAGDKPVRELVADDAWLNGEFISTVQQRGAAIIKARK 240

Query: 241 LSSALSAASSACDHIRDWVLGTPE 264
           LSSALSAASSACDHIRDWVLGTPE
Sbjct: 241 LSSALSAASSACDHIRDWVLGTPE 264

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10798652|emb|CAC12826.1| malate dehydrogenase [Nicotiana tabacum]

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 251/264 (95%), Positives = 259/264 (98%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           MAK+PVRVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1   MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           AAFPLLKGVVATTDAVEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE+H
Sbjct: 61  AAFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
           AAPNCKVLVVANPANTNALILKE+APSIP KNI+CLTRLDHNRALGQISE+LNVQVSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEYAPSIPEKNISCLTRLDHNRALGQISERLNVQVSDVK 180

Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
           NVIIWGNHSSSQYPDVNHATV T AGEKPVRELV DDAWLNGEFI+TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHATVATPAGEKPVRELVADDAWLNGEFISTVQQRGAAIIKARK 240

Query: 241 LSSALSAASSACDHIRDWVLGTPE 264
           LSSALSAASSACDHIRDWVLGTPE
Sbjct: 241 LSSALSAASSACDHIRDWVLGTPE 264

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|187235712|gb|ACD02021.1| cytoplasmic malate dehydrogennase [Zea mays]

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 248/264 (93%), Positives = 255/264 (96%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           MAKEP+RVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1   MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           AAFPLLKGVVATTD VEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE H
Sbjct: 61  AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAH 120

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
           AAPNCKVLVVANPANTNALILKEFAPSIP KN+TCLTRLDHNRALGQISE+LNVQVSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLNVQVSDVK 180

Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
           NVIIWGNHSSSQYPDVNHATV T+ GEKPVRELV DD WLNGEFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHATVETSTGEKPVRELVSDDEWLNGEFITTVQQRGAAIIKARK 240

Query: 241 LSSALSAASSACDHIRDWVLGTPE 264
            SSALSAASSACD+IRDWVLGTPE
Sbjct: 241 FSSALSAASSACDYIRDWVLGTPE 264

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|347516612|gb|AEO99201.1| Cr611 [Catharanthus roseus]

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 248/264 (93%), Positives = 256/264 (96%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           MAKEPVRVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           AAFPLLKGVVATTD  EAC GVNIAVMVGGFPRKEGMERKDVMSKNVSIYK+QASALEQ+
Sbjct: 61  AAFPLLKGVVATTDVAEACAGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEQY 120

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
           AAPNCKVL VANPANTNALILKEFAPSIPAKN+TCLTRLDHNRALGQISE+LNV VS+VK
Sbjct: 121 AAPNCKVLFVANPANTNALILKEFAPSIPAKNVTCLTRLDHNRALGQISERLNVPVSEVK 180

Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
           NVIIWGNHSS+QYPDVNHATV T+AGEKPVRELVKDD WLNGEFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVKTSAGEKPVRELVKDDEWLNGEFITTVQQRGAAIIKARK 240

Query: 241 LSSALSAASSACDHIRDWVLGTPE 264
           LSSALSAAS+ACDHIRDWVLGTPE
Sbjct: 241 LSSALSAASAACDHIRDWVLGTPE 264

Source: Catharanthus roseus

Species: Catharanthus roseus

Genus: Catharanthus

Family: Apocynaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|320449084|gb|ADW27479.1| malate dehydrogenase [Zea mays]

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/264 (93%), Positives = 254/264 (96%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           MAKEP+RVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1   MAKEPIRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           AAFPLLKGVVATTD VEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK QASALE H
Sbjct: 61  AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKTQASALEAH 120

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
           AAPNCKVLVVANPANTNALILKEFAPSIP +N+TCLTRLDHNRALGQISE+L+VQVSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPDRNVTCLTRLDHNRALGQISERLSVQVSDVK 180

Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
           NVIIWGNHSS+QYPDVNHATV T+ GEKPVRELV DD WLNGEFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVKTSTGEKPVRELVADDEWLNGEFITTVQQRGAAIIKARK 240

Query: 241 LSSALSAASSACDHIRDWVLGTPE 264
            SSALSAASSACDHIRDWVLGTPE
Sbjct: 241 FSSALSAASSACDHIRDWVLGTPE 264

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242039369|ref|XP_002467079.1| hypothetical protein SORBIDRAFT_01g019280 [Sorghum bicolor] gi|241920933|gb|EER94077.1| hypothetical protein SORBIDRAFT_01g019280 [Sorghum bicolor]

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 248/264 (93%), Positives = 256/264 (96%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           MAK+P+RVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1   MAKDPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           AAFPLLKGVVATTD VEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALE H
Sbjct: 61  AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEAH 120

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
           AAPNCKVLVVANPANTNALILKEFAPSIP KN+TCLTRLDHNRALGQISE+L+VQVSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLSVQVSDVK 180

Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
           NVIIWGNHSS+QYPDVNHATV T+ GEKPVRELV DD WLNGEFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVKTSTGEKPVRELVADDEWLNGEFITTVQQRGAAIIKARK 240

Query: 241 LSSALSAASSACDHIRDWVLGTPE 264
           LSSALSAASSACDHIRDWVLGTPE
Sbjct: 241 LSSALSAASSACDHIRDWVLGTPE 264

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226503019|ref|NP_001147160.1| malate dehydrogenase, cytoplasmic [Zea mays] gi|195607842|gb|ACG25751.1| malate dehydrogenase, cytoplasmic [Zea mays]

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/264 (93%), Positives = 254/264 (96%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           MAKEP+RVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1   MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           AAFPLLKGVVATTD VEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK QASALE H
Sbjct: 61  AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKTQASALEAH 120

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
           AAPNCKVLVVANPANTNALILKEFAPSIP +N+TCLTRLDHNRALGQISE+L+VQVSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPDRNVTCLTRLDHNRALGQISERLSVQVSDVK 180

Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
           NVIIWGNHSS+QYPDVNHATV T+ GEKPVRELV DD WLNGEFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVKTSTGEKPVRELVADDEWLNGEFITTVQQRGAAIIKARK 240

Query: 241 LSSALSAASSACDHIRDWVLGTPE 264
            SSALSAASSACDHIRDWVLGTPE
Sbjct: 241 FSSALSAASSACDHIRDWVLGTPE 264

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
TAIR|locus:2018244	332	c-NAD-MDH1 "cytosolic-NAD-depe	0.88	0.795	0.886	4.9e-124
TAIR|locus:2176441	332	c-NAD-MDH2 "cytosolic-NAD-depe	0.88	0.795	0.886	2.1e-123
TAIR|locus:2165066	339	c-NAD-MDH3 "cytosolic-NAD-depe	0.873	0.772	0.709	1.8e-101
UNIPROTKB|P11708	334	MDH1 "Malate dehydrogenase, cy	0.87	0.781	0.586	3.4e-77
UNIPROTKB|P40925	334	MDH1 "Malate dehydrogenase, cy	0.87	0.781	0.578	4.3e-77
UNIPROTKB|Q3T145	334	MDH1 "Malate dehydrogenase, cy	0.87	0.781	0.578	1.9e-76
MGI|MGI:97051	334	Mdh1 "malate dehydrogenase 1,	0.87	0.781	0.586	3.1e-76
RGD|3072	334	Mdh1 "malate dehydrogenase 1,	0.87	0.781	0.586	3.1e-76
UNIPROTKB|Q5ZME2	334	MDH1 "Malate dehydrogenase, cy	0.866	0.778	0.573	8.1e-76
UNIPROTKB|E2QV08	348	MDH1 "Malate dehydrogenase" [C	0.87	0.75	0.570	1.7e-75

TAIR|locus:2018244 c-NAD-MDH1 "cytosolic-NAD-dependent malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1219 (434.2 bits), Expect = 4.9e-124, P = 4.9e-124
 Identities = 234/264 (88%), Positives = 247/264 (93%)

Query:     1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
             MAKEPVRVLVTGAAGQIGYALVPMIARG+MLG DQPVILHMLDIPPAAEALNGVKMEL+D
Sbjct:     1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPPAAEALNGVKMELID 60

Query:    61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
             AAFPLLKGVVATTDAVE CTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QA+ALE+H
Sbjct:    61 AAFPLLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKH 120

Query:   121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
             AAPNCKVLVVANPANTNALILKEFAPSIP KNI+CLTRLDHNRALGQISE+L+V VSDVK
Sbjct:   121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLSVPVSDVK 180

Query:   181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
             NVIIWGNHSSSQYPDVNHA V T++GEKPVRELVKDDAWL+GEFI+TVQQRGAAIIKARK
Sbjct:   181 NVIIWGNHSSSQYPDVNHAKVQTSSGEKPVRELVKDDAWLDGEFISTVQQRGAAIIKARK 240

Query:   241 XXXXXXXXXXXCDHIRDWVLGTPE 264
                        CDHIRDWVLGTPE
Sbjct:   241 LSSALSAASSACDHIRDWVLGTPE 264

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0010043 "response to zinc ion" evidence=IEP

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

TAIR|locus:2176441 c-NAD-MDH2 "cytosolic-NAD-dependent malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
 Identities = 234/264 (88%), Positives = 246/264 (93%)

Query:     1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
             MAKEPVRVLVTGAAGQIGYALVPMIARG+MLG DQPVILHMLDIP AAEALNGVKMELVD
Sbjct:     1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPFAAEALNGVKMELVD 60

Query:    61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
             AAFPLLKGVVATTDAVEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE+H
Sbjct:    61 AAFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120

Query:   121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
             AAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRALGQ+SE+L+V VSDVK
Sbjct:   121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQVSERLSVPVSDVK 180

Query:   181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
             NVIIWGNHSS+QYPDVNHATV T+ GEKPVRELVK+D WLNGEFI+TVQQRGAAIIKARK
Sbjct:   181 NVIIWGNHSSTQYPDVNHATVKTSVGEKPVRELVKNDEWLNGEFISTVQQRGAAIIKARK 240

Query:   241 XXXXXXXXXXXCDHIRDWVLGTPE 264
                        CDHIRDWV+GTPE
Sbjct:   241 LSSALSAASSACDHIRDWVVGTPE 264

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

TAIR|locus:2165066 c-NAD-MDH3 "cytosolic-NAD-dependent malate dehydrogenase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
 Identities = 186/262 (70%), Positives = 220/262 (83%)

Query:     3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
             K+P+RVL+TGAAG IGYA+ PMIARG+MLG DQP+ILH+LDI PA+ +L  VKMEL D+A
Sbjct:     9 KDPIRVLITGAAGNIGYAIAPMIARGIMLGPDQPMILHLLDIEPASSSLEAVKMELQDSA 68

Query:    63 FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
             FPLLKGV+ATT+ VEAC  VNI +M+GGFPR  GMERKDVMSKNV IYKAQASALE++A+
Sbjct:    69 FPLLKGVIATTNVVEACKDVNIVIMIGGFPRIAGMERKDVMSKNVVIYKAQASALERYAS 128

Query:   123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
              +CKVLVVANPANTNALILKEFAPSIP +NITCLTRLDHNRAL Q+++KL+V VS VKNV
Sbjct:   129 DDCKVLVVANPANTNALILKEFAPSIPEENITCLTRLDHNRALAQLADKLSVPVSSVKNV 188

Query:   183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXX 242
             I+WGNHSS+QYPD NHATV+T  G++P++ELV D  WL  EFI  VQQRGAA+++ARK  
Sbjct:   189 IVWGNHSSTQYPDTNHATVSTKTGDRPLKELVTDHNWLKNEFIVEVQQRGAAVLRARKQS 248

Query:   243 XXXXXXXXXCDHIRDWVLGTPE 264
                      CDHIRDW LGTP+
Sbjct:   249 SAFSAAGAACDHIRDWFLGTPK 270

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016020 "membrane" evidence=IDA

UNIPROTKB|P11708 MDH1 "Malate dehydrogenase, cytoplasmic" [Sus scrofa (taxid:9823)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 153/261 (58%), Positives = 185/261 (70%)

Query:     4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
             EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A 
Sbjct:     3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 62

Query:    64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
             PLLK V+AT     A   +++A++VG  PR++GMERKD++  NV I+K Q +AL+++A  
Sbjct:    63 PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 122

Query:   124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
             + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVI
Sbjct:   123 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVI 182

Query:   184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXX 243
             IWGNHSS+QYPDVNHA V   A E  V E VKDD+WL GEFITTVQQRGAA+IKARK   
Sbjct:   183 IWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 242

Query:   244 XXXXXXXXCDHIRDWVLGTPE 264
                     CDH+RD   GTPE
Sbjct:   243 AMSAAKAICDHVRDIWFGTPE 263

GO:0005829 "cytosol" evidence=IDA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P40925 MDH1 "Malate dehydrogenase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 151/261 (57%), Positives = 186/261 (71%)

Query:     4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
             EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A 
Sbjct:     3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 62

Query:    64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
             PLLK V+AT     A   +++A++VG  PR+EGMERKD++  NV I+K+Q +AL+++A  
Sbjct:    63 PLLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKK 122

Query:   124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
             + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V  +DVKNVI
Sbjct:   123 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVI 182

Query:   184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXX 243
             IWGNHSS+QYPDVNHA V     E  V E +KDD+WL GEF+TTVQQRGAA+IKARK   
Sbjct:   183 IWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSS 242

Query:   244 XXXXXXXXCDHIRDWVLGTPE 264
                     CDH+RD   GTPE
Sbjct:   243 AMSAAKAICDHVRDIWFGTPE 263

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0047860 "diiodophenylpyruvate reductase activity" evidence=IEA

GO:0004470 "malic enzyme activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0006094 "gluconeogenesis" evidence=TAS

GO:0030060 "L-malate dehydrogenase activity" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

UNIPROTKB|Q3T145 MDH1 "Malate dehydrogenase, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 151/261 (57%), Positives = 184/261 (70%)

Query:     4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
             EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A 
Sbjct:     3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 62

Query:    64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
             PLLK V+AT     A   +++A++VG  PR++GMERKD++  NV I+K Q +AL+++A  
Sbjct:    63 PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 122

Query:   124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
             + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVI
Sbjct:   123 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVI 182

Query:   184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXX 243
             IWGNHSS+QYPDVNHA V     E  V E +KDD+WL GEFITTVQQRGAA+IKARK   
Sbjct:   183 IWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSS 242

Query:   244 XXXXXXXXCDHIRDWVLGTPE 264
                     CDH+RD   GTPE
Sbjct:   243 AMSAAKAICDHVRDIWFGTPE 263

GO:0005813 "centrosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:97051 Mdh1 "malate dehydrogenase 1, NAD (soluble)" [Mus musculus (taxid:10090)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 153/261 (58%), Positives = 184/261 (70%)

Query:     4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
             EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A 
Sbjct:     3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 62

Query:    64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
             PLL+ V+AT     A   +++AV+VG  PR+EGMERKD++  NV I+K+Q +ALE++A  
Sbjct:    63 PLLQDVIATDKEEIAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKSQGTALEKYAKK 122

Query:   124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
             + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVI
Sbjct:   123 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTADDVKNVI 182

Query:   184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXX 243
             IWGNHSS+QYPDVNHA V     E  V E +KDD+WL GEFITTVQQRGAA+IKARK   
Sbjct:   183 IWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSS 242

Query:   244 XXXXXXXXCDHIRDWVLGTPE 264
                      DHIRD   GTPE
Sbjct:   243 AMSAAKAIADHIRDIWFGTPE 263

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=ISO

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0006107 "oxaloacetate metabolic process" evidence=ISO

GO:0006108 "malate metabolic process" evidence=ISO

GO:0006734 "NADH metabolic process" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=ISO

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0019674 "NAD metabolic process" evidence=ISO

GO:0030060 "L-malate dehydrogenase activity" evidence=ISO

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

RGD|3072 Mdh1 "malate dehydrogenase 1, NAD (soluble)" [Rattus norvegicus (taxid:10116)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 153/261 (58%), Positives = 184/261 (70%)

Query:     4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
             EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A 
Sbjct:     3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 62

Query:    64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
             PLL+ V+AT     A   +++AV+VG  PR+EGMERKD++  NV I+K+Q +ALE++A  
Sbjct:    63 PLLQDVIATDKEEVAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKSQGAALEKYAKK 122

Query:   124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
             + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVI
Sbjct:   123 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTADDVKNVI 182

Query:   184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXX 243
             IWGNHSS+QYPDVNHA V     E  V E +KDD+WL GEFITTVQQRGAA+IKARK   
Sbjct:   183 IWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSS 242

Query:   244 XXXXXXXXCDHIRDWVLGTPE 264
                      DHIRD   GTPE
Sbjct:   243 AMSAAKAISDHIRDIWFGTPE 263

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0006107 "oxaloacetate metabolic process" evidence=IDA

GO:0006108 "malate metabolic process" evidence=IDA

GO:0006734 "NADH metabolic process" evidence=IDA

GO:0016615 "malate dehydrogenase activity" evidence=IDA

GO:0019674 "NAD metabolic process" evidence=IDA

GO:0030060 "L-malate dehydrogenase activity" evidence=IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IDA

UNIPROTKB|Q5ZME2 MDH1 "Malate dehydrogenase, cytoplasmic" [Gallus gallus (taxid:9031)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 149/260 (57%), Positives = 185/260 (71%)

Query:     4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
             EP+RVLVTGAAGQI Y+L+  IA+G + G +QP++L +LDI P    L GV MEL D A 
Sbjct:     3 EPIRVLVTGAAGQIAYSLLYSIAKGDVFGKEQPLVLVLLDITPMMTVLEGVVMELQDCAL 62

Query:    64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
             PLL+ V+ T     A   ++IA++VG  PR+EGMERKD++  NV I+K+Q +AL+++A  
Sbjct:    63 PLLREVIPTDKEEVAFKDLDIAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKK 122

Query:   124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
               KV+VV NPANTN LI  + APSIP +N +CLTRLDHNRA  QI+ KL V  +DVKNVI
Sbjct:   123 TVKVVVVGNPANTNCLIASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTSNDVKNVI 182

Query:   184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXX 243
             IWGNHSS+QYPDVNHA VN    E  V E +KDD+WL G+FI TVQQRGAA+IKARK   
Sbjct:   183 IWGNHSSTQYPDVNHAKVNVKGKEVGVYEAIKDDSWLKGDFILTVQQRGAAVIKARKLSS 242

Query:   244 XXXXXXXXCDHIRDWVLGTP 263
                     CDH+RD   GTP
Sbjct:   243 AMSAAKAICDHVRDIWFGTP 262

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006094 "gluconeogenesis" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|E2QV08 MDH1 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 149/261 (57%), Positives = 184/261 (70%)

Query:     4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
             EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A 
Sbjct:    17 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 76

Query:    64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
             PLLK V+AT     A   +++A++VG  PR++GMERKD++  NV I+K Q +ALE++A  
Sbjct:    77 PLLKDVIATDKEDVAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALEKYAKK 136

Query:   124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
             + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVI
Sbjct:   137 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVI 196

Query:   184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXX 243
             IWGNHSS+QYPDV+HA V     E  V + +KD++WL GEFITTVQQRGAA+IKARK   
Sbjct:   197 IWGNHSSTQYPDVSHAKVKLQGKEVGVYDALKDESWLKGEFITTVQQRGAAVIKARKLSS 256

Query:   244 XXXXXXXXCDHIRDWVLGTPE 264
                     CDH+RD   GTPE
Sbjct:   257 AMSAAKAICDHVRDIWFGTPE 277

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A9IIS3	MDH_BORPD	1, ., 1, ., 1, ., 3, 7	0.5296	0.9066	0.8267	yes	no
O48905	MDHC_MEDSA	1, ., 1, ., 1, ., 3, 7	0.9280	0.88	0.7951	N/A	no
Q0VQ52	MDH_ALCBS	1, ., 1, ., 1, ., 3, 7	0.5534	0.8566	0.7835	yes	no
Q9RXI8	MDH_DEIRA	1, ., 1, ., 1, ., 3, 7	0.5492	0.8966	0.8151	yes	no
B1XV63	MDH_POLNS	1, ., 1, ., 1, ., 3, 7	0.5568	0.86	0.7841	yes	no
O88989	MDHC_RAT	1, ., 1, ., 1, ., 3, 7	0.6130	0.87	0.7814	yes	no
O24047	MDHC_MESCR	1, ., 1, ., 1, ., 3, 7	0.9280	0.88	0.7951	N/A	no
Q7NZ60	MDH_CHRVO	1, ., 1, ., 1, ., 3, 7	0.5538	0.8533	0.7852	yes	no
Q0ABE6	MDH_ALHEH	1, ., 1, ., 1, ., 3, 7	0.5725	0.8566	0.7883	yes	no
Q0AFK6	MDH_NITEC	1, ., 1, ., 1, ., 3, 7	0.5269	0.8533	0.7828	yes	no
Q21K60	MDH_SACD2	1, ., 1, ., 1, ., 3, 7	0.5534	0.8566	0.7859	yes	no
Q54VM2	MDHC_DICDI	1, ., 1, ., 1, ., 3, 7	0.5568	0.88	0.7927	yes	no
Q8XXW5	MDH_RALSO	1, ., 1, ., 1, ., 3, 7	0.5378	0.86	0.7841	yes	no
Q5ZME2	MDHC_CHICK	1, ., 1, ., 1, ., 3, 7	0.6	0.8666	0.7784	yes	no
B2U705	MDH_RALPJ	1, ., 1, ., 1, ., 3, 7	0.5416	0.86	0.7865	yes	no
Q6DIY9	MDHC_XENTR	1, ., 1, ., 1, ., 3, 7	0.6053	0.87	0.7814	yes	no
A1K5Q9	MDH_AZOSB	1, ., 1, ., 1, ., 3, 7	0.5208	0.9066	0.8242	yes	no
A1WV94	MDH_HALHL	1, ., 1, ., 1, ., 3, 7	0.5458	0.8566	0.7883	yes	no
Q1Q932	MDH_PSYCK	1, ., 1, ., 1, ., 3, 7	0.5725	0.8566	0.7811	yes	no
Q82WB9	MDH_NITEU	1, ., 1, ., 1, ., 3, 7	0.5038	0.8533	0.7828	yes	no
Q08062	MDHC_MAIZE	1, ., 1, ., 1, ., 3, 7	0.9431	0.88	0.7951	N/A	no
Q0K8F5	MDH_CUPNH	1, ., 1, ., 1, ., 3, 7	0.5496	0.86	0.7889	yes	no
P93819	MDHC1_ARATH	1, ., 1, ., 1, ., 3, 7	0.9280	0.88	0.7951	yes	no
P14152	MDHC_MOUSE	1, ., 1, ., 1, ., 3, 7	0.6130	0.87	0.7814	yes	no
B2UKY5	MDH_AKKM8	1, ., 1, ., 1, ., 3, 7	0.5458	0.86	0.7841	yes	no
Q47TT4	MDH_THEFY	1, ., 1, ., 1, ., 3, 7	0.5719	0.8666	0.7878	yes	no
A5WGM2	MDH_PSYWF	1, ., 1, ., 1, ., 3, 7	0.5572	0.8566	0.7859	yes	no
A4FFX3	MDH_SACEN	1, ., 1, ., 1, ., 3, 7	0.5454	0.8633	0.7896	yes	no
Q7XDC8	MDHC_ORYSJ	1, ., 1, ., 1, ., 3, 7	0.9166	0.88	0.7951	yes	no
C5BU70	MDH_TERTT	1, ., 1, ., 1, ., 3, 7	0.5534	0.8566	0.7859	yes	no
P57106	MDHC2_ARATH	1, ., 1, ., 1, ., 3, 7	0.9280	0.88	0.7951	no	no
P11708	MDHC_PIG	1, ., 1, ., 1, ., 3, 7	0.6130	0.87	0.7814	yes	no
C1CY73	MDH_DEIDV	1, ., 1, ., 1, ., 3, 7	0.5610	0.8566	0.7787	yes	no
Q3T145	MDHC_BOVIN	1, ., 1, ., 1, ., 3, 7	0.6053	0.87	0.7814	yes	no
P40925	MDHC_HUMAN	1, ., 1, ., 1, ., 3, 7	0.6053	0.87	0.7814	yes	no
Q7W5Q8	MDH_BORPA	1, ., 1, ., 1, ., 3, 7	0.5365	0.9066	0.8267	yes	no
Q2L068	MDH_BORA1	1, ., 1, ., 1, ., 3, 7	0.5226	0.9066	0.8267	yes	no
Q7WD94	MDH_BORBR	1, ., 1, ., 1, ., 3, 7	0.5365	0.9066	0.8267	yes	no
Q7VW97	MDH_BORPE	1, ., 1, ., 1, ., 3, 7	0.5365	0.9066	0.8267	yes	no
Q9SML8	MDHC_BETVU	1, ., 1, ., 1, ., 3, 7	0.9204	0.88	0.7951	N/A	no
A4SWW0	MDH_POLSQ	1, ., 1, ., 1, ., 3, 7	0.5568	0.86	0.7841	yes	no
Q46YU4	MDH_CUPPJ	1, ., 1, ., 1, ., 3, 7	0.5419	0.86	0.7889	yes	no
B3R570	MDH_CUPTR	1, ., 1, ., 1, ., 3, 7	0.5419	0.86	0.7889	yes	no
Q4FQU7	MDH_PSYA2	1, ., 1, ., 1, ., 3, 7	0.5687	0.8566	0.7811	yes	no
Q1IWC9	MDH_DEIGD	1, ., 1, ., 1, ., 3, 7	0.5648	0.8566	0.7694	yes	no
Q9K3J3	MDH_STRCO	1, ., 1, ., 1, ., 3, 7	0.5530	0.8666	0.7902	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.983
3rd Layer	1.1.1.37	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	300
PLN00135	309	PLN00135, PLN00135, malate dehydrogenase	0.0
cd01336	325	cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an	0.0
TIGR01758	324	TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-	1e-165
TIGR01759	323	TIGR01759, MalateDH-SF1, malate dehydrogenase	1e-159
PRK05442	326	PRK05442, PRK05442, malate dehydrogenase; Provisio	1e-144
cd00704	323	cd00704, MDH, Malate dehydrogenase	1e-140
cd01338	322	cd01338, MDH_choloroplast_like, Chloroplast-like m	1e-137
PLN00112	444	PLN00112, PLN00112, malate dehydrogenase (NADP); P	1e-80
TIGR01757	387	TIGR01757, Malate-DH_plant, malate dehydrogenase,	3e-75
TIGR01756	313	TIGR01756, LDH_protist, lactate dehydrogenase	2e-71
cd05295	452	cd05295, MDH_like, Malate dehydrogenase-like	2e-61
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	3e-59
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	1e-44
pfam00056	142	pfam00056, Ldh_1_N, lactate/malate dehydrogenase,	1e-36
pfam02866	173	pfam02866, Ldh_1_C, lactate/malate dehydrogenase,	1e-30
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	5e-17
PTZ00117	319	PTZ00117, PTZ00117, malate dehydrogenase; Provisio	2e-15
cd05294	309	cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas	1e-14
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	1e-14
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	2e-13
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	1e-11
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	4e-11
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	2e-09
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	3e-09
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	9e-09
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	9e-09
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	3e-08
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	3e-07
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	4e-07
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	5e-06
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	6e-06
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	3e-04
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	5e-04

>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase

 Score =  525 bits (1355), Expect = 0.0
 Identities = 225/241 (93%), Positives = 232/241 (96%)

Query: 24  MIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83
           MIARGVMLG DQPVILHMLDIPPAAEALNGVKMEL+DAAFPLLKGVVATTD VEAC GVN
Sbjct: 1   MIARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVN 60

Query: 84  IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKE 143
           IAVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE+HAAP+CKVLVVANPANTNALILKE
Sbjct: 61  IAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKE 120

Query: 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNT 203
           FAPSIP KNITCLTRLDHNRALGQISE+L V VSDVKNVIIWGNHSS+QYPDVNHATV T
Sbjct: 121 FAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSSTQYPDVNHATVKT 180

Query: 204 AAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 263
            +GEKPVRELV DDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP
Sbjct: 181 PSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 240

Query: 264 E 264
           E
Sbjct: 241 E 241

Length = 309

>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases

 Score =  514 bits (1325), Expect = 0.0
 Identities = 184/261 (70%), Positives = 212/261 (81%)

Query: 4   EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
           EP+RVLVTGAAGQI Y+L+PMIA+G + G DQPVILH+LDIPPA +AL GV MEL D AF
Sbjct: 1   EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAF 60

Query: 64  PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
           PLLK VVATTD  EA   V++A++VG  PRKEGMERKD++  NV I+K Q  AL+++A  
Sbjct: 61  PLLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKK 120

Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
           N KVLVV NPANTNALIL ++APSIP +N T LTRLDHNRA  QI+ KL V VSDVKNVI
Sbjct: 121 NVKVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNRAKSQIALKLGVPVSDVKNVI 180

Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS 243
           IWGNHSS+QYPDVNHATV      KP RE VKDDAWLNGEFI+TVQ+RGAA+IKARKLSS
Sbjct: 181 IWGNHSSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKARKLSS 240

Query: 244 ALSAASSACDHIRDWVLGTPE 264
           A+SAA + CDH+ DW  GTPE
Sbjct: 241 AMSAAKAICDHVHDWWFGTPE 261

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325

>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent

 Score =  462 bits (1191), Expect = e-165
 Identities = 184/258 (71%), Positives = 215/258 (83%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
           RV+VTGAAGQIGYAL+PMIARG MLG DQP+ILH+LDIPPA + L GV MEL+D AFPLL
Sbjct: 1   RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLL 60

Query: 67  KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
            GVV T D   A T V++A++VG FPRKEGMER+D++SKNV I+K Q  AL++ A  +CK
Sbjct: 61  DGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCK 120

Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG 186
           VLVV NPANTNAL+L  +APSIP KN + LTRLDHNRAL Q++E+  V VSDVKNVIIWG
Sbjct: 121 VLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWG 180

Query: 187 NHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSALS 246
           NHSS+QYPDVNHATV     +KPVRE +KDDA+L+GEFITTVQQRGAAII+ARKLSSALS
Sbjct: 181 NHSSTQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRARKLSSALS 240

Query: 247 AASSACDHIRDWVLGTPE 264
           AA +A D + DWVLGTPE
Sbjct: 241 AAKAAVDQMHDWVLGTPE 258

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324

>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase

 Score =  446 bits (1148), Expect = e-159
 Identities = 168/262 (64%), Positives = 199/262 (75%), Gaps = 4/262 (1%)

Query: 3   KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
           K+PVRV VTGAAGQIGY+L+  IA G + G DQPV+LH+LDIPPA +AL GV MEL D A
Sbjct: 1   KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCA 60

Query: 63  FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
           FPLL GVVATTD  EA   V+ A++VG FPRK GMER D++SKN  I+K Q  AL + A 
Sbjct: 61  FPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAK 120

Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
            + KVLVV NPANTNALI  + AP IP KN + +TRLDHNRA  Q++ K  V VSDVKNV
Sbjct: 121 KDVKVLVVGNPANTNALIASKNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNV 180

Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS 242
           IIWGNHS++Q PD  HATV      +PV+E++KDD WL GEFI TVQQRGAA+I+AR  S
Sbjct: 181 IIWGNHSNTQVPDFTHATV----DGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARGAS 236

Query: 243 SALSAASSACDHIRDWVLGTPE 264
           SA SAA++A DH+RDWV GTPE
Sbjct: 237 SAASAANAAIDHVRDWVTGTPE 258

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323

>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional

 Score =  409 bits (1053), Expect = e-144
 Identities = 156/263 (59%), Positives = 192/263 (73%), Gaps = 4/263 (1%)

Query: 2   AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA 61
            K PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L+IPPA +AL GV MEL D 
Sbjct: 1   MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDC 60

Query: 62  AFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA 121
           AFPLL GVV T D   A    ++A++VG  PR  GMERKD++  N +I+ AQ  AL + A
Sbjct: 61  AFPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVA 120

Query: 122 APNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181
           A + KVLVV NPANTNALI  + AP +PA+N T +TRLDHNRAL Q++ K  V V+D+K 
Sbjct: 121 ARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPVADIKK 180

Query: 182 VIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKL 241
           + +WGNHS++QYPD  HAT++     KP  E++ D AWL   FI TVQ+RGAAII+AR  
Sbjct: 181 MTVWGNHSATQYPDFRHATIDG----KPAAEVINDQAWLEDTFIPTVQKRGAAIIEARGA 236

Query: 242 SSALSAASSACDHIRDWVLGTPE 264
           SSA SAA++A DH+RDWVLGTPE
Sbjct: 237 SSAASAANAAIDHVRDWVLGTPE 259

Length = 326

>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase

 Score =  398 bits (1025), Expect = e-140
 Identities = 157/259 (60%), Positives = 192/259 (74%), Gaps = 1/259 (0%)

Query: 6   VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
           + VL+TGAAGQIGY L+ +IA G + G DQPVILH+LDIPPA +AL GV MEL D AFPL
Sbjct: 1   LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPL 60

Query: 66  LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
           LKGVV TTD  EA   V++A++VG FPRK GMER D++ KN  I+K Q  AL + A P  
Sbjct: 61  LKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTV 120

Query: 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIW 185
           KVLVV NPANTNALI  + AP++P KN T LTRLDHNRA  Q++ KL V+VSDVKNVIIW
Sbjct: 121 KVLVVGNPANTNALIALKNAPNLPPKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIW 180

Query: 186 GNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSAL 245
           GNHS++Q PD+++A V    G + V   + D+ WLN EF+ TVQ+RGAAIIK R  SSA 
Sbjct: 181 GNHSNTQVPDLSNAVVYGPGGTEWV-LDLLDEEWLNDEFVKTVQKRGAAIIKKRGASSAA 239

Query: 246 SAASSACDHIRDWVLGTPE 264
           SAA +  DH++DW+ GTP 
Sbjct: 240 SAAKAIADHVKDWLFGTPP 258

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323

>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases

 Score =  389 bits (1002), Expect = e-137
 Identities = 151/261 (57%), Positives = 184/261 (70%), Gaps = 4/261 (1%)

Query: 4   EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
           +PVRV VTGAAGQIGY+L+  IA G M G DQPVIL +L++P A +AL GV MEL D AF
Sbjct: 1   KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF 60

Query: 64  PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
           PLL  +V T D   A    + A++VG  PR  GMER D++  N  I+ AQ  AL   A+ 
Sbjct: 61  PLLAEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASR 120

Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
           + KVLVV NP NTNALI  + AP IP  N T +TRLDHNRA  Q+++K  V V+DVKN++
Sbjct: 121 DVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMV 180

Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS 243
           IWGNHS +QYPD  +AT+    G KP  E++ D AWL  EFI TVQ+RGAAIIKAR  SS
Sbjct: 181 IWGNHSPTQYPDFTNATI----GGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKARGASS 236

Query: 244 ALSAASSACDHIRDWVLGTPE 264
           A SAA++A DH+RDWVLGTPE
Sbjct: 237 AASAANAAIDHMRDWVLGTPE 257

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322

>gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional

 Score =  250 bits (640), Expect = 1e-80
 Identities = 116/262 (44%), Positives = 151/262 (57%), Gaps = 4/262 (1%)

Query: 3   KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
           K+ + V V+GAAG I   L+  +A G + G DQP+ L +L    + +AL GV MEL D+ 
Sbjct: 98  KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSL 157

Query: 63  FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
           +PLL+ V    D  E       A+++G  PR  GMER D++  N  I+  Q  AL + A+
Sbjct: 158 YPLLREVSIGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVAS 217

Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
            N KV+VV NP NTNALI  + AP+IPAKN   LTRLD NRA  Q++ K  V    V NV
Sbjct: 218 RNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNV 277

Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS 242
            IWGNHS++Q PD     +N      PV+E++ D  WL  EF   VQ+RG  +IK    S
Sbjct: 278 TIWGNHSTTQVPDF----LNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKKWGRS 333

Query: 243 SALSAASSACDHIRDWVLGTPE 264
           SA S A S  D I+  V  TPE
Sbjct: 334 SAASTAVSIADAIKSLVTPTPE 355

Length = 444

>gnl|CDD|130818 TIGR01757, Malate-DH_plant, malate dehydrogenase, NADP-dependent

 Score =  235 bits (600), Expect = 3e-75
 Identities = 123/262 (46%), Positives = 157/262 (59%), Gaps = 4/262 (1%)

Query: 3   KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
           K+ V V V+GAAG I   L+ M+A G + G DQP+ L +L    + EAL GV MEL D+ 
Sbjct: 42  KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSL 101

Query: 63  FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
           +PLL+ V    D  E     + A+++G  PR  GMER D++  N  I+  Q  AL   A+
Sbjct: 102 YPLLREVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVAS 161

Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
            NCKVLVV NP NTNALI  + AP+IP KN   LTRLD NRA  Q++ K     + V NV
Sbjct: 162 KNCKVLVVGNPCNTNALIAMKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNV 221

Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS 242
            IWGNHS++Q PD     VN   G +P +E++KD  WL  EF  TVQ+RG A+IK    S
Sbjct: 222 TIWGNHSTTQVPDF----VNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKWGRS 277

Query: 243 SALSAASSACDHIRDWVLGTPE 264
           SA S A S  D I+  V+ TPE
Sbjct: 278 SAASTAVSIADAIKSLVVPTPE 299

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. Length = 387

>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase

 Score =  222 bits (568), Expect = 2e-71
 Identities = 97/251 (38%), Positives = 142/251 (56%), Gaps = 4/251 (1%)

Query: 25  IARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84
           IA G + G ++PV LH+L+IPPA   L  + MEL D AFP L G + TT   EA   ++ 
Sbjct: 5   IANGDLYG-NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFKDIDC 63

Query: 85  AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF 144
           A +V   P K G  R D+++KN  I+KA   AL ++A P  KVLV+ NP NTN L+    
Sbjct: 64  AFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLH 123

Query: 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTA 204
           AP + A+N + L  LDHNRA+ +I+ KL V V  + +V++WGNH+ S   D+ HA     
Sbjct: 124 APKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAESMVADLTHAEFTKN 183

Query: 205 AGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP- 263
              + V + +  D +   +F   + QR   I++ R  +SA S   ++  H++ W+ GT  
Sbjct: 184 GKHQKVFDELCRD-YPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWLFGTRP 242

Query: 264 -EVGSLLIFTP 273
            EV S+ I  P
Sbjct: 243 GEVLSMGIPVP 253

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313

>gnl|CDD|133431 cd05295, MDH_like, Malate dehydrogenase-like

 Score =  201 bits (512), Expect = 2e-61
 Identities = 90/269 (33%), Positives = 145/269 (53%), Gaps = 13/269 (4%)

Query: 5   PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP 64
           P++V +T A+  + Y L+P +A G + G ++ + +H+LD P   E L G+ ME+ D AFP
Sbjct: 123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFP 182

Query: 65  LLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
           LL+G+  TTD   A    ++ V++  F  KEG + +  +   V+I +     +E++A  +
Sbjct: 183 LLRGISVTTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKED 242

Query: 125 CKVLVVA-NPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
            KV+V      N    IL ++APSIP KNI  + RL  NRA   ++ KLNV  + +K+VI
Sbjct: 243 VKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVARLQENRAKALLARKLNVNSAGIKDVI 302

Query: 184 IWGNHSSSQYPDVNHATVNTAAG--------EKPVRELVKDDAWLNGEFITTVQQRGAAI 235
           +WGN   + Y D++ A V              +PV ELV D  W+NGEF+ T++   +  
Sbjct: 303 VWGNIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVATLKSLSS-- 360

Query: 236 IKARKLSSALSAASSACDHIRDWVLGTPE 264
             +    +A+S A +    +  W  G+P 
Sbjct: 361 --SLNHEAAISPAHAIATTLSYWYHGSPP 387

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 452

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score =  191 bits (488), Expect = 3e-59
 Identities = 86/262 (32%), Positives = 125/262 (47%), Gaps = 16/262 (6%)

Query: 6   VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
           ++V V GA G +G +L  ++     LG++    L ++DI    E   GV ++L  AA PL
Sbjct: 1   MKVAVIGA-GNVGSSLAFLLLLQ-GLGSE----LVLIDINE--EKAEGVALDLSHAAAPL 52

Query: 66  LKGVVATTDA-VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
              V  T D   E   G +I V+  G PRK GM R D++ KN  I K  A A+ ++A P+
Sbjct: 53  GSDVKITGDGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PD 111

Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVII 184
             VLVV NP +    I  +F+     + I   T LD  R    ++EKL V   DV   +I
Sbjct: 112 AIVLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVI 171

Query: 185 WGNHSSSQYPDVNHATVNTAAGEKPVRELVK-DDAWLNGEFITTVQQRGAAIIKARKLSS 243
            G H  +  P  + ATV    G KP+ EL+K D      E I  V+  GA II+A+   +
Sbjct: 172 -GEHGDTMVPLWSQATV----GGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKGAGT 226

Query: 244 ALSAASSACDHIRDWVLGTPEV 265
               A++    +   +     V
Sbjct: 227 YYGPAAALARMVEAILRDEKRV 248

Length = 313

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score =  152 bits (385), Expect = 1e-44
 Identities = 65/199 (32%), Positives = 99/199 (49%), Gaps = 9/199 (4%)

Query: 8   VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-L 66
           + V GA G +G AL   +A G        + L + DI    E L GV M+L DA  PL  
Sbjct: 1   IAVIGAGGNVGPALAFGLADG---SVLLAIELVLYDIDE--EKLKGVAMDLQDAVEPLAD 55

Query: 67  KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
             V  T D  EA    ++ ++  G  RK GM R D++ +NV I K     +E++ +P+  
Sbjct: 56  IKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKY-SPDAW 114

Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG 186
           ++VV+NP +    ++  ++  +P + +  L  LD  R    ++EKL V   DVK V I G
Sbjct: 115 IIVVSNPVDIITYLVWRYSG-LPKEKVIGLGTLDPIRFRRILAEKLGVDPDDVK-VYILG 172

Query: 187 NHSSSQYPDVNHATVNTAA 205
            H  SQ PD +   + T+ 
Sbjct: 173 EHGGSQVPDWSTVRIATSI 191

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain

 Score =  127 bits (322), Expect = 1e-36
 Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 8/150 (5%)

Query: 6   VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
           V+V V GA G +G +L   +A    L  +    L ++DI    +   GV M+L   +  L
Sbjct: 1   VKVAVVGAGGGVGSSLAFALA-LQGLADE----LVLVDINK--DKAEGVAMDLSHGSTFL 53

Query: 66  LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
               +   D  EA    ++ V+  G PRK GM R D++++N  I+K    A+ +  AP+ 
Sbjct: 54  SVPGIVGGDDYEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKS-APDA 112

Query: 126 KVLVVANPANTNALILKEFAPSIPAKNITC 155
            VLVV+NP +    I  + +   P + I  
Sbjct: 113 IVLVVSNPVDILTYIAWKVSGLPPERVIGS 142

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142

>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain

 Score =  113 bits (284), Expect = 1e-30
 Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 1/111 (0%)

Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
           T LD  RA   ++EK  V    V NV + G HS +Q+PD +HA V        V+E +KD
Sbjct: 1   TTLDTARARTFLAEKFGVDPRSV-NVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKD 59

Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEVGS 267
             W   E I  VQ  G  +I+A+  S+  S A +A    +  + GT  V S
Sbjct: 60  TDWELEELIERVQNAGYEVIEAKAGSTTYSMAYAAARIAKAILRGTGGVLS 110

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score = 79.1 bits (196), Expect = 5e-17
 Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 33/196 (16%)

Query: 69  VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128
           V  T D  E   G ++ V+  G PRK GM R D++  N  I K  A  ++++ APN  V+
Sbjct: 55  VTGTNDY-EDIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKY-APNAIVI 112

Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQV 176
           VV NP +    +  +             +    NR +G             I+E+L V V
Sbjct: 113 VVTNPLDVMTYVAYKA------------SGFPRNRVIGMAGVLDSARFRYFIAEELGVSV 160

Query: 177 SDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAII 236
            DV+ +++ G H  +  P   ++TV    G  P+ EL+  +     E +   +  GA I+
Sbjct: 161 KDVQAMVL-GGHGDTMVPLPRYSTV----GGIPLTELITKEEI--DEIVERTRNGGAEIV 213

Query: 237 KARKLSSALSAASSAC 252
              K  SA  A ++A 
Sbjct: 214 NLLKTGSAYYAPAAAI 229

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional

 Score = 74.8 bits (184), Expect = 2e-15
 Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 11/183 (6%)

Query: 73  TDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132
           T+  E     ++ V+  G  RKE M R+D+++ N  I K+ A +++++  PN  V+ V N
Sbjct: 65  TNNYEDIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTN 123

Query: 133 PANTNALILKEFAPSIPAKNITCLT-RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSS 191
           P +    + +E +  IP+  I  +   LD +R    ++EKL V   DV  V+I G H   
Sbjct: 124 PLDCMVKVFQEKS-GIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVI-GGHGDL 181

Query: 192 QYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQR---GAAIIKARKLSSALSAA 248
             P   + TVN      P+ + VK  A    E    +++    G  I+K  K  SA  A 
Sbjct: 182 MVPLPRYCTVNGI----PLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLLKKGSAFFAP 237

Query: 249 SSA 251
           ++A
Sbjct: 238 AAA 240

Length = 319

>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 64/237 (27%), Positives = 113/237 (47%), Gaps = 22/237 (9%)

Query: 6   VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMELVDAAF 63
           ++V + GA+G++G A   ++A+       + V+  ++++  P + E L G+++++ DA  
Sbjct: 1   MKVSIIGASGRVGSATALLLAK-------EDVVKEINLISRPKSLEKLKGLRLDIYDALA 53

Query: 64  PLLKGVVATTDAVEACT-GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
                      +  +   G +I ++  G PRKEGM R D+  KN  I K  A  + +  A
Sbjct: 54  AAGIDAEIKISSDLSDVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEF-A 112

Query: 123 PNCKVLVVANPANT---NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDV 179
           P+ K+LVV NP +     AL    F  +   +     T LD  R    I++  NV +S+V
Sbjct: 113 PDTKILVVTNPVDVMTYKALKESGFDKN---RVFGLGTHLDSLRFKVAIAKHFNVHISEV 169

Query: 180 KNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAII 236
              II G H  S  P ++    +T+ G  P++   +   +   + + TV+  G  II
Sbjct: 170 HTRII-GEHGDSMVPLIS----STSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNII 221

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score = 72.5 bits (179), Expect = 1e-14
 Identities = 67/253 (26%), Positives = 113/253 (44%), Gaps = 45/253 (17%)

Query: 14  AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLK--GVVA 71
           AG +G  L  ++A        +   + + DI        G  +++ +AA P+      + 
Sbjct: 10  AGNVGATLAHLLAL------KELGDVVLFDI--VEGVPQGKALDIAEAA-PVEGFDTKIT 60

Query: 72  TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131
            T+  E   G ++ V+  G PRK GM R D++  N  I K  A  ++++ AP+  V+VV 
Sbjct: 61  GTNDYEDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKY-APDAIVIVVT 119

Query: 132 NPANT-NALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQVSD 178
           NP +    + LKE             +    NR +G             I+E+LNV V D
Sbjct: 120 NPVDAMTYVALKE-------------SGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKD 166

Query: 179 VKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKA 238
           V   ++ G H  S  P V ++TV    G  P+ +L+  +  L+ E +   ++ GA I+  
Sbjct: 167 VTAFVL-GGHGDSMVPLVRYSTV----GGIPLEDLLSKEK-LD-EIVERTRKGGAEIVGL 219

Query: 239 RKLSSALSAASSA 251
            K  SA  A +++
Sbjct: 220 LKTGSAYYAPAAS 232

Length = 307

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 9/216 (4%)

Query: 41  MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERK 100
           ++D+    E   G  ++L  A+  L  G +            +I V+  G PRK G  R 
Sbjct: 28  LVDVNE--EKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRKPGETRL 85

Query: 101 DVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160
           D++++N  I ++  + L+++  P+  +LVV+NP +    + ++ +     + I   T LD
Sbjct: 86  DLINRNAPILRSVITNLKKY-GPDAIILVVSNPVDILTYVAQKLSGLPKNRVIGSGTLLD 144

Query: 161 HNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWL 220
             R    ++EKL+V    V   ++ G H  SQ    + ATV       P+ EL       
Sbjct: 145 SARFRSLLAEKLDVDPQSVHAYVL-GEHGDSQVVAWSTATVGG----LPLEELAPFTKLD 199

Query: 221 NGEFITTVQQRGAAIIKARKLSSALSAASSACDHIR 256
                  V+  G  II+  K ++    A++  D ++
Sbjct: 200 LEAIEEEVRTSGYEIIR-LKGATNYGIATAIADIVK 234

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score = 64.0 bits (156), Expect = 1e-11
 Identities = 58/191 (30%), Positives = 84/191 (43%), Gaps = 23/191 (12%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMEL--VDAA 62
           +V V GAAG IG  L  ++         QP +  L + DI  AA    GV  +L  +  A
Sbjct: 1   KVAVLGAAGGIGQPLSLLLKL-------QPYVSELSLYDIAGAA----GVAADLSHIPTA 49

Query: 63  FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
              +KG         A  G ++ V+  G PRK GM R D+ + N  I K   +A+ +   
Sbjct: 50  -ASVKGFSGEEGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-C 107

Query: 123 PNCKVLVVANPANTN----ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSD 178
           P   +LV+ NP N+     A +LK+     P   +  +T LD  RA   ++E        
Sbjct: 108 PKAMILVITNPVNSTVPIAAEVLKKKGVYDP-NKLFGVTTLDIVRANTFVAELKGKD-PM 165

Query: 179 VKNVIIWGNHS 189
             NV + G HS
Sbjct: 166 EVNVPVIGGHS 176

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score = 62.1 bits (152), Expect = 4e-11
 Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 25/193 (12%)

Query: 6   VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMEL--VDA 61
           V+V V GAAG IG  L        +L    P++  L + DI        GV  +L  ++ 
Sbjct: 1   VKVAVLGAAGGIGQPLS-------LLLKLNPLVSELALYDI----VNTPGVAADLSHINT 49

Query: 62  AFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA 121
               + G +   +  +A  G ++ V+  G PRK GM R D+ + N  I +  A+A+ +  
Sbjct: 50  P-AKVTGYLGPEELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA- 107

Query: 122 APNCKVLVVANPANTN----ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVS 177
            P   +L+++NP N+     A +LK+     P K +  +T LD  RA   ++E L +  +
Sbjct: 108 CPKALILIISNPVNSTVPIAAEVLKKAGVYDP-KRLFGVTTLDVVRANTFVAELLGLDPA 166

Query: 178 DVK-NVIIWGNHS 189
            V   VI  G HS
Sbjct: 167 KVNVPVI--GGHS 177

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 18/218 (8%)

Query: 37  VILHMLDIPPAAEALNGVK---MELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPR 93
           V+L +++  P  +AL+  +   +   D         V  T+        +I V+  G PR
Sbjct: 29  VLLDVVEGIPQGKALDMYEASPVGGFDTK-------VTGTNNYADTANSDIVVITAGLPR 81

Query: 94  KEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI 153
           K GM R+D++S N  I +     + +H +PN  ++VV+NP +    +  + +     + I
Sbjct: 82  KPGMSREDLLSMNAGIVREVTGRIMEH-SPNPIIVVVSNPLDAMTYVAWQKSGFPKERVI 140

Query: 154 TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVREL 213
                LD  R    I+ +L V V DV   ++ G H  +  P V ++TV       PV +L
Sbjct: 141 GQAGVLDSARFRTFIAMELGVSVQDVTACVL-GGHGDAMVPLVRYSTV----AGIPVADL 195

Query: 214 VKDDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSA 251
           +  +     E +   ++ G  I+   K  SA  A +++
Sbjct: 196 ISAERI--AEIVERTRKGGGEIVNLLKQGSAYYAPAAS 231

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 71/262 (27%), Positives = 106/262 (40%), Gaps = 36/262 (13%)

Query: 3   KEPVRVLVTGAAGQIGYALVPMI-ARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD- 60
           K   +V V G  GQ+G A    I A+G+    D+   L ++D+       + +K E +D 
Sbjct: 1   KPRNKVTVVGV-GQVGMACAISILAKGL---ADE---LVLVDVVE-----DKLKGEAMDL 48

Query: 61  ---AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASAL 117
              +AF     + A  D         + ++  G  + EG  R D++ +NV I+K     L
Sbjct: 49  QHGSAFLKNPKIEADKD-YSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKL 107

Query: 118 EQHAAPNCKVLVVANPANTNALILKEFAPSI----PAKNITCLTRLDHNRALGQISEKLN 173
            +++ PN  +LVV+NP +    I+   A  +      + I     LD  R    I+E+L 
Sbjct: 108 VKYS-PNAILLVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLG 162

Query: 174 VQVSDVKNVIIWGNHSSSQYP---DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQ 230
           V  S V   II G H  S  P    VN A V       P     KD      E    V  
Sbjct: 163 VAPSSVHGWII-GEHGDSSVPVWSGVNVAGVRLQDL-NPDIGTDKDPEKWK-EVHKQVVD 219

Query: 231 RGAAIIKARKLSS---ALSAAS 249
               +IK +  +S    LS A 
Sbjct: 220 SAYEVIKLKGYTSWAIGLSVAD 241

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score = 55.5 bits (134), Expect = 9e-09
 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 11/151 (7%)

Query: 70  VATTDAVEACTGVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEQHAAPN 124
           V  T+  E   G ++ ++  G  ++ G       R D++  N  I    A  ++++  PN
Sbjct: 63  VIGTNNYEDIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PN 121

Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVII 184
             V+V+ NP +    +L+E +     K       LD +R    I+EKL V   DV   +I
Sbjct: 122 AFVIVITNPLDVMVKLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHASVI 181

Query: 185 WGNHSSSQYPDVNHATVNTAAGEKPVRELVK 215
            G H     P   + TV       P+ E +K
Sbjct: 182 -GAHGDKMVPLPRYVTVGGI----PLSEFIK 207

Length = 321

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 59/205 (28%), Positives = 92/205 (44%), Gaps = 27/205 (13%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL- 65
           +V V GAAG IG AL  ++   +  G++    L + DI P      GV ++L      + 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPAGSE----LSLYDIAPVTP---GVAVDLSHIPTAVK 54

Query: 66  LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA--P 123
           +KG  +  D   A  G ++ ++  G  RK GM+R D+ + N  I K   + +E+ A   P
Sbjct: 55  IKGF-SGEDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVK---NLVEKVAKTCP 110

Query: 124 NCKVLVVANPANTNALILKEF---APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
              + ++ NP NT   I  E    A       +  +T LD  R+   ++E    Q  +V+
Sbjct: 111 KACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAELKGKQPGEVE 170

Query: 181 -NVIIWGNHSS-------SQYPDVN 197
             VI  G HS        SQ P V+
Sbjct: 171 VPVI--GGHSGVTILPLLSQVPGVS 193

Length = 312

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 19/188 (10%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL--VDAAFP 64
           +V V GAAG IG  L  ++    ++       LH+ DI        GV  ++  ++    
Sbjct: 20  KVAVLGAAGGIGQPLSLLMKMNPLVSE-----LHLYDIANTP----GVAADVSHINTP-A 69

Query: 65  LLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
            ++G +      +A  G ++ ++  G PRK GM R D+ + N  I K    A+ +H  PN
Sbjct: 70  QVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKH-CPN 128

Query: 125 CKVLVVANPANTN----ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
             V +++NP N+     A +LK+ A     K +  +T LD  RA   ++EK  +  +DV 
Sbjct: 129 ALVNIISNPVNSTVPIAAEVLKK-AGVYDPKKLFGVTTLDVVRANTFVAEKKGLDPADV- 186

Query: 181 NVIIWGNH 188
           +V + G H
Sbjct: 187 DVPVVGGH 194

Length = 323

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 10/167 (5%)

Query: 77  EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136
             C   ++ V+  G P+K G  R D++ KN+ I+K+    +      +   LV +NP + 
Sbjct: 69  SDCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMAS-GFDGIFLVASNPVDI 127

Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDV 196
                 + +     + I   T LD  R    +SEKL+V    V   II G H  +++P  
Sbjct: 128 LTYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYII-GEHGDTEFPVW 186

Query: 197 NHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQ--RGAA--IIKAR 239
           +HA V       P+ E ++++   + E +  + +  R AA  II+ +
Sbjct: 187 SHANV----AGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKK 229

Length = 315

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 30/172 (17%)

Query: 56  MELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS 115
           M+L  AA  L       +     C   ++ V+  G P+K G  R +++ +NV I K+   
Sbjct: 39  MDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVP 98

Query: 116 ALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ-------- 167
            +   +  +   LV  NP +    IL   A          L+    NR +G         
Sbjct: 99  EV-VKSGFDGIFLVATNPVD----ILTYVAWK--------LSGFPKNRVIGSGTVLDTAR 145

Query: 168 ----ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVK 215
               ++EKL V    V   II G H  S+ P  + AT+    G  P+ + +K
Sbjct: 146 LRYLLAEKLGVDPQSVHAYII-GEHGDSEVPVWSSATI----GGVPLLDYLK 192

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 14/194 (7%)

Query: 3   KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
           +   +V V G  G +G A+   I     L  D    L ++D+ P  + L G  ++L  AA
Sbjct: 35  RRHTKVSVVGV-GNVGMAIAQTI-----LTQDLADELALVDVNP--DKLRGEMLDLQHAA 86

Query: 63  --FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
              P  K ++A+TD      G ++ ++  G  +  G  R +++ +NV++++     L ++
Sbjct: 87  AFLPRTK-ILASTD-YAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKY 144

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
            +P+  +L+V+NP +    +  + +     + I   T LD +R    I++ L+V   DV+
Sbjct: 145 -SPDTILLIVSNPVDVLTYVAWKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQ 203

Query: 181 NVIIWGNHSSSQYP 194
             I+ G H  S   
Sbjct: 204 AYIV-GEHGDSSVA 216

Length = 350

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 56/190 (29%), Positives = 84/190 (44%), Gaps = 19/190 (10%)

Query: 6   VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL--VDAAF 63
            +V V GAAG IG  L  ++ +     ++    L + DI  A     GV  +L  +D   
Sbjct: 9   FKVAVLGAAGGIGQPL-SLLLKQNPHVSE----LSLYDIVGAP----GVAADLSHIDTP- 58

Query: 64  PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
             + G        +A  G ++ ++  G PRK GM R D+ + N  I +    A    +AP
Sbjct: 59  AKVTGYADGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVR-DLVAAVASSAP 117

Query: 124 NCKVLVVANPANTNALILKEFAPSI----PAKNITCLTRLDHNRALGQISEKLNVQVSDV 179
              V +V+NP N+   I  E         P K +  +T LD  RA   ++E L +   DV
Sbjct: 118 KAIVGIVSNPVNSTVPIAAETLKKAGVYDPRK-LFGVTTLDVVRARKFVAEALGMNPYDV 176

Query: 180 KNVIIWGNHS 189
            NV + G HS
Sbjct: 177 -NVPVVGGHS 185

Length = 321

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score = 41.3 bits (98), Expect = 3e-04
 Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 11/150 (7%)

Query: 56  MELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS 115
           M+L     P +K V         C G ++ V+  G  +K G  R D++ +NV+I+K    
Sbjct: 43  MDLAHGT-PFVKPVRIYAGDYADCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIP 101

Query: 116 ALEQHAAPNCKVLVVANPANTNALILKEFAPSI----PAKNITCLTRLDHNRALGQISEK 171
            + ++ AP+  +LVV NP +    +L   A  +    P + I   T LD  R    + E 
Sbjct: 102 QILKY-APDAILLVVTNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEH 156

Query: 172 LNVQVSDVKNVIIWGNHSSSQYPDVNHATV 201
           L V    V   II G H  S+    + A +
Sbjct: 157 LGVDPRSVHAYII-GEHGDSEVAVWSSANI 185

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score = 40.5 bits (96), Expect = 5e-04
 Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 48/162 (29%)

Query: 77  EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK-------VLV 129
             C   +I V+  G P+K G  R D++ KN  I K           P  K        LV
Sbjct: 64  SDCKDADIVVITAGAPQKPGETRLDLLEKNAKIMK--------SIVPKIKASGFDGIFLV 115

Query: 130 VANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQVS 177
            +NP +    ++++            L+ L  NR +G             ++EKLNV   
Sbjct: 116 ASNPVDVITYVVQK------------LSGLPKNRVIGTGTSLDTARLRRALAEKLNV--- 160

Query: 178 DVKNVI--IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 217
           D ++V   + G H  SQ+   +  TV      KP+ +L+K+ 
Sbjct: 161 DPRSVHAYVLGEHGDSQFVAWSTVTVGG----KPLLDLLKEG 198

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
KOG1496	332	consensus Malate dehydrogenase [Energy production	100.0
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	100.0
PRK05442	326	malate dehydrogenase; Provisional	100.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	100.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	100.0
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	100.0
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	100.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	100.0
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	100.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	100.0
KOG1495	332	consensus Lactate dehydrogenase [Energy production	100.0
PLN00135	309	malate dehydrogenase	100.0
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	100.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	100.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	100.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	100.0
PLN02602	350	lactate dehydrogenase	100.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	100.0
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	100.0
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	100.0
PTZ00117	319	malate dehydrogenase; Provisional	100.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	100.0
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	100.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	100.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	100.0
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	100.0
PLN00106	323	malate dehydrogenase	100.0
PTZ00325	321	malate dehydrogenase; Provisional	100.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	100.0
PRK06223	307	malate dehydrogenase; Reviewed	100.0
PRK05086	312	malate dehydrogenase; Provisional	100.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	100.0
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	100.0
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	100.0
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	99.95
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	99.92
PRK15076	431	alpha-galactosidase; Provisional	99.89
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	99.88
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	99.86
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.83
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	99.71
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	99.71
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	99.35
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	99.14
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	99.08
PLN02166	436	dTDP-glucose 4,6-dehydratase	99.07
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	99.03
PLN02206	442	UDP-glucuronate decarboxylase	99.0
PLN02695	370	GDP-D-mannose-3',5'-epimerase	99.0
PLN00198	338	anthocyanidin reductase; Provisional	99.0
PLN02650	351	dihydroflavonol-4-reductase	98.99
PLN02427	386	UDP-apiose/xylose synthase	98.98
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.94
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	98.93
PLN02572	442	UDP-sulfoquinovose synthase	98.9
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	98.9
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	98.89
PLN02214	342	cinnamoyl-CoA reductase	98.89
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.89
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	98.89
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	98.86
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	98.86
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	98.84
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	98.83
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.82
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	98.82
PLN02896	353	cinnamyl-alcohol dehydrogenase	98.8
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	98.79
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	98.78
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	98.77
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	98.76
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	98.75
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	98.74
PLN02240	352	UDP-glucose 4-epimerase	98.72
PLN02686	367	cinnamoyl-CoA reductase	98.7
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	98.68
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	98.67
PLN02583	297	cinnamoyl-CoA reductase	98.67
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.67
PLN02260	668	probable rhamnose biosynthetic enzyme	98.67
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	98.67
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.64
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.64
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.64
PLN02778	298	3,5-epimerase/4-reductase	98.62
PLN02653	340	GDP-mannose 4,6-dehydratase	98.61
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.61
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.6
PRK10675	338	UDP-galactose-4-epimerase; Provisional	98.6
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	98.59
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	98.57
CHL00194	317	ycf39 Ycf39; Provisional	98.57
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	98.52
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.52
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	98.47
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	98.47
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.44
PRK05865	854	hypothetical protein; Provisional	98.43
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.43
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.41
PRK09135	249	pteridine reductase; Provisional	98.41
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.38
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.36
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.36
PRK06194	287	hypothetical protein; Provisional	98.34
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.34
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.34
PLN03209	576	translocon at the inner envelope of chloroplast su	98.33
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	98.32
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	98.31
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	98.3
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.29
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.27
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.24
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.2
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	98.19
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.17
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	98.17
PRK12320	699	hypothetical protein; Provisional	98.17
PRK07856	252	short chain dehydrogenase; Provisional	98.16
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.15
PRK07201	657	short chain dehydrogenase; Provisional	98.14
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	98.14
PRK07067	257	sorbitol dehydrogenase; Provisional	98.13
PLN02253	280	xanthoxin dehydrogenase	98.13
PRK07806	248	short chain dehydrogenase; Provisional	98.12
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	98.11
PRK12746	254	short chain dehydrogenase; Provisional	98.11
PRK05717	255	oxidoreductase; Validated	98.1
PRK06180	277	short chain dehydrogenase; Provisional	98.1
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	98.1
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.1
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.09
PRK06500	249	short chain dehydrogenase; Provisional	98.08
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	98.07
PRK10538	248	malonic semialdehyde reductase; Provisional	98.07
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	98.06
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	98.06
PRK12937	245	short chain dehydrogenase; Provisional	98.05
PRK08278	273	short chain dehydrogenase; Provisional	98.05
PRK07774	250	short chain dehydrogenase; Provisional	98.05
PRK07523	255	gluconate 5-dehydrogenase; Provisional	98.04
PRK08264	238	short chain dehydrogenase; Validated	98.04
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.04
PRK05875	276	short chain dehydrogenase; Provisional	98.03
PRK08265	261	short chain dehydrogenase; Provisional	98.02
PRK06179	270	short chain dehydrogenase; Provisional	98.02
PRK07326	237	short chain dehydrogenase; Provisional	98.0
PRK06138	252	short chain dehydrogenase; Provisional	98.0
PRK06182	273	short chain dehydrogenase; Validated	98.0
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.98
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	97.97
PRK06482	276	short chain dehydrogenase; Provisional	97.96
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.96
PRK06398	258	aldose dehydrogenase; Validated	97.96
PRK07890	258	short chain dehydrogenase; Provisional	97.96
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.96
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	97.95
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.95
PRK06128	300	oxidoreductase; Provisional	97.95
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.94
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	97.93
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	97.93
PLN02260	668	probable rhamnose biosynthetic enzyme	97.93
PRK07069	251	short chain dehydrogenase; Validated	97.93
PRK08643	256	acetoin reductase; Validated	97.92
PRK06172	253	short chain dehydrogenase; Provisional	97.92
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.92
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	97.91
PRK05993	277	short chain dehydrogenase; Provisional	97.91
PRK07478	254	short chain dehydrogenase; Provisional	97.9
PRK12939	250	short chain dehydrogenase; Provisional	97.89
PRK07825	273	short chain dehydrogenase; Provisional	97.89
PRK07576	264	short chain dehydrogenase; Provisional	97.89
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.89
PRK08219	227	short chain dehydrogenase; Provisional	97.89
PRK09072	263	short chain dehydrogenase; Provisional	97.89
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	97.89
PRK07814	263	short chain dehydrogenase; Provisional	97.87
PRK08263	275	short chain dehydrogenase; Provisional	97.87
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.87
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	97.87
PLN02996	491	fatty acyl-CoA reductase	97.87
PRK07060	245	short chain dehydrogenase; Provisional	97.86
COG2910	211	Putative NADH-flavin reductase [General function p	97.86
PRK12747	252	short chain dehydrogenase; Provisional	97.86
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	97.85
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.85
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.85
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	97.85
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	97.84
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.84
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	97.82
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.82
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	97.82
PRK06124	256	gluconate 5-dehydrogenase; Provisional	97.81
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.81
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.81
PRK12742	237	oxidoreductase; Provisional	97.81
PRK08226	263	short chain dehydrogenase; Provisional	97.81
PRK08267	260	short chain dehydrogenase; Provisional	97.8
TIGR01746	367	Thioester-redct thioester reductase domain. It has	97.8
PRK06101	240	short chain dehydrogenase; Provisional	97.79
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.79
PRK08085	254	gluconate 5-dehydrogenase; Provisional	97.79
PRK08628	258	short chain dehydrogenase; Provisional	97.79
PRK12829	264	short chain dehydrogenase; Provisional	97.79
PRK06841	255	short chain dehydrogenase; Provisional	97.79
PRK07024	257	short chain dehydrogenase; Provisional	97.78
PRK05866	293	short chain dehydrogenase; Provisional	97.78
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.78
PRK08213	259	gluconate 5-dehydrogenase; Provisional	97.78
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	97.77
PRK05876	275	short chain dehydrogenase; Provisional	97.76
PRK07453	322	protochlorophyllide oxidoreductase; Validated	97.76
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	97.76
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	97.76
PRK12744	257	short chain dehydrogenase; Provisional	97.74
PRK12827	249	short chain dehydrogenase; Provisional	97.74
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.74
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	97.74
PRK12828	239	short chain dehydrogenase; Provisional	97.74
PRK06701	290	short chain dehydrogenase; Provisional	97.74
PRK09134	258	short chain dehydrogenase; Provisional	97.73
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	97.73
PRK07097	265	gluconate 5-dehydrogenase; Provisional	97.73
PRK07102	243	short chain dehydrogenase; Provisional	97.72
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	97.72
PRK06523	260	short chain dehydrogenase; Provisional	97.72
PRK12935	247	acetoacetyl-CoA reductase; Provisional	97.72
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	97.71
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	97.7
PRK06914	280	short chain dehydrogenase; Provisional	97.7
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.7
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.7
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	97.7
PRK07985	294	oxidoreductase; Provisional	97.69
PRK05884	223	short chain dehydrogenase; Provisional	97.69
PRK07035	252	short chain dehydrogenase; Provisional	97.69
PRK06196	315	oxidoreductase; Provisional	97.69
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	97.69
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.68
PRK06198	260	short chain dehydrogenase; Provisional	97.68
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	97.68
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.67
PRK08277	278	D-mannonate oxidoreductase; Provisional	97.67
PRK08339	263	short chain dehydrogenase; Provisional	97.67
PRK06197	306	short chain dehydrogenase; Provisional	97.65
PRK07063	260	short chain dehydrogenase; Provisional	97.65
PRK07454	241	short chain dehydrogenase; Provisional	97.65
PRK14982	340	acyl-ACP reductase; Provisional	97.64
PRK08177	225	short chain dehydrogenase; Provisional	97.64
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.64
PRK07578	199	short chain dehydrogenase; Provisional	97.62
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.61
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	97.61
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.61
PRK08589	272	short chain dehydrogenase; Validated	97.61
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	97.6
PRK06924	251	short chain dehydrogenase; Provisional	97.59
PRK06181	263	short chain dehydrogenase; Provisional	97.59
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.57
PRK07109	334	short chain dehydrogenase; Provisional	97.56
PLN00016	378	RNA-binding protein; Provisional	97.56
PRK05693	274	short chain dehydrogenase; Provisional	97.56
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.56
PRK07832	272	short chain dehydrogenase; Provisional	97.55
PRK09291	257	short chain dehydrogenase; Provisional	97.55
PRK12367	245	short chain dehydrogenase; Provisional	97.54
PRK07577	234	short chain dehydrogenase; Provisional	97.54
PRK07074	257	short chain dehydrogenase; Provisional	97.54
PRK08703	239	short chain dehydrogenase; Provisional	97.53
PRK05650	270	short chain dehydrogenase; Provisional	97.53
PRK09242	257	tropinone reductase; Provisional	97.53
PLN02503	605	fatty acyl-CoA reductase 2	97.52
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.52
PRK12938	246	acetyacetyl-CoA reductase; Provisional	97.51
PRK09186	256	flagellin modification protein A; Provisional	97.5
PLN02780	320	ketoreductase/ oxidoreductase	97.5
PRK07023	243	short chain dehydrogenase; Provisional	97.5
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	97.49
PRK08340	259	glucose-1-dehydrogenase; Provisional	97.49
PRK06123	248	short chain dehydrogenase; Provisional	97.49
PRK07775	274	short chain dehydrogenase; Provisional	97.49
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.48
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.47
PRK06484	520	short chain dehydrogenase; Validated	97.46
PRK09009	235	C factor cell-cell signaling protein; Provisional	97.45
PRK06139	330	short chain dehydrogenase; Provisional	97.45
PRK05867	253	short chain dehydrogenase; Provisional	97.45
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.44
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	97.44
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	97.44
PRK08655	437	prephenate dehydrogenase; Provisional	97.43
PRK06949	258	short chain dehydrogenase; Provisional	97.42
PRK06114	254	short chain dehydrogenase; Provisional	97.42
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	97.41
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.39
PRK07904	253	short chain dehydrogenase; Provisional	97.39
PRK06483	236	dihydromonapterin reductase; Provisional	97.37
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.37
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.37
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	97.35
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	97.33
PRK05855	582	short chain dehydrogenase; Validated	97.32
PRK08324	681	short chain dehydrogenase; Validated	97.31
PRK07680	273	late competence protein ComER; Validated	97.31
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	97.3
PRK06947	248	glucose-1-dehydrogenase; Provisional	97.3
TIGR02415	254	23BDH acetoin reductases. One member of this famil	97.3
PRK07417	279	arogenate dehydrogenase; Reviewed	97.29
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.28
PRK12743	256	oxidoreductase; Provisional	97.28
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.28
PRK12824	245	acetoacetyl-CoA reductase; Provisional	97.28
PRK06057	255	short chain dehydrogenase; Provisional	97.27
PRK08251	248	short chain dehydrogenase; Provisional	97.26
PRK06484	520	short chain dehydrogenase; Validated	97.26
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.25
PRK05872	296	short chain dehydrogenase; Provisional	97.23
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	97.22
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	97.22
PRK05854	313	short chain dehydrogenase; Provisional	97.22
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.19
PRK06125	259	short chain dehydrogenase; Provisional	97.18
PLN02688	266	pyrroline-5-carboxylate reductase	97.18
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	97.17
PRK08936	261	glucose-1-dehydrogenase; Provisional	97.16
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	97.15
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	97.15
PRK06953	222	short chain dehydrogenase; Provisional	97.14
PRK07062	265	short chain dehydrogenase; Provisional	97.14
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.12
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.11
PRK07201	657	short chain dehydrogenase; Provisional	97.1
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	97.1
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.09
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	97.04
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.04
PRK08862	227	short chain dehydrogenase; Provisional	97.04
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.03
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.02
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.02
PRK06545	359	prephenate dehydrogenase; Validated	97.01
PRK07831	262	short chain dehydrogenase; Provisional	96.99
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	96.97
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.96
PRK08017	256	oxidoreductase; Provisional	96.95
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	96.95
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.94
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	96.93
PRK07677	252	short chain dehydrogenase; Provisional	96.92
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	96.91
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	96.91
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	96.9
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	96.89
PRK07791	286	short chain dehydrogenase; Provisional	96.88
PRK05599	246	hypothetical protein; Provisional	96.88
PRK06940	275	short chain dehydrogenase; Provisional	96.87
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	96.85
PRK12480	330	D-lactate dehydrogenase; Provisional	96.85
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	96.83
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.81
PRK08507	275	prephenate dehydrogenase; Validated	96.78
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	96.77
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	96.77
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.72
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.71
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.7
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.7
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	96.7
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	96.67
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	96.65
PLN02256	304	arogenate dehydrogenase	96.65
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.62
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.58
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.58
PTZ00431	260	pyrroline carboxylate reductase; Provisional	96.56
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.56
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.56
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.55
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.53
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	96.53
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.5
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.48
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	96.47
PRK08303	305	short chain dehydrogenase; Provisional	96.44
PRK07041	230	short chain dehydrogenase; Provisional	96.41
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	96.41
PLN02712	667	arogenate dehydrogenase	96.4
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	96.39
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.39
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	96.36
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	96.34
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.34
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	96.33
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	96.32
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.29
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	96.28
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	96.26
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	96.25
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	96.23
PRK06720	169	hypothetical protein; Provisional	96.21
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.18
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.16
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	96.15
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	96.14
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	96.14
PLN02383	344	aspartate semialdehyde dehydrogenase	96.09
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	96.07
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	96.06
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	96.06
PRK09620	229	hypothetical protein; Provisional	96.04
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.02
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.02
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	96.01
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	95.99
PRK15059	292	tartronate semialdehyde reductase; Provisional	95.97
PRK13304	265	L-aspartate dehydrogenase; Reviewed	95.92
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.91
PRK07574	385	formate dehydrogenase; Provisional	95.9
PLN02712	667	arogenate dehydrogenase	95.9
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.88
PRK08291	330	ectoine utilization protein EutC; Validated	95.87
PRK13243	333	glyoxylate reductase; Reviewed	95.86
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.85
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	95.84
PRK06407	301	ornithine cyclodeaminase; Provisional	95.84
PRK08300	302	acetaldehyde dehydrogenase; Validated	95.81
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	95.79
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	95.76
PRK08618	325	ornithine cyclodeaminase; Validated	95.75
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	95.74
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	95.72
PRK08605	332	D-lactate dehydrogenase; Validated	95.71
PRK07340	304	ornithine cyclodeaminase; Validated	95.7
PRK07589	346	ornithine cyclodeaminase; Validated	95.68
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	95.68
PRK06141	314	ornithine cyclodeaminase; Validated	95.68
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	95.67
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.66
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	95.66
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.64
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.64
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	95.63
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	95.61
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.6
COG3320	382	Putative dehydrogenase domain of multifunctional n	95.55
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	95.54
PRK06823	315	ornithine cyclodeaminase; Validated	95.53
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	95.52
KOG1208	314	consensus Dehydrogenases with different specificit	95.52
PLN03139	386	formate dehydrogenase; Provisional	95.5
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.49
PRK00048	257	dihydrodipicolinate reductase; Provisional	95.47
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.47
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	95.46
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.44
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.43
PRK08818	370	prephenate dehydrogenase; Provisional	95.36
KOG2733	423	consensus Uncharacterized membrane protein [Functi	95.31
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	95.3
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.29
PRK06199	379	ornithine cyclodeaminase; Validated	95.28
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	95.2
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	95.19
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	95.09
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	95.08
PLN00015	308	protochlorophyllide reductase	95.06
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	95.02
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	94.99
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	94.98
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	94.92
COG1028	251	FabG Dehydrogenases with different specificities (	94.9
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	94.89
PLN02494	477	adenosylhomocysteinase	94.85
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.83
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	94.82
KOG4777	361	consensus Aspartate-semialdehyde dehydrogenase [Am	94.8
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	94.78
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	94.77
KOG1221	467	consensus Acyl-CoA reductase [Lipid transport and	94.73
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	94.72
PLN02928	347	oxidoreductase family protein	94.72
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	94.7
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	94.66
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	94.65
PLN02858	1378	fructose-bisphosphate aldolase	94.58
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	94.58
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	94.58
KOG2774	366	consensus NAD dependent epimerase [General functio	94.58
PLN03129	581	NADP-dependent malic enzyme; Provisional	94.53
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.52
PRK06046	326	alanine dehydrogenase; Validated	94.49
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	94.47
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	94.46
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	94.46
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	94.43

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=6.4e-69  Score=458.15  Aligned_cols=289  Identities=70%  Similarity=1.081  Sum_probs=279.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      +++.+|+|+||+|+||+++++.+..+-+||++||+.++|+|+.+..+.|+|..|+|+||++|++..+..+++..++|+|.
T Consensus         2 ~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~Vvattd~~~afkdv   81 (332)
T KOG1496|consen    2 KEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGVVATTDEVEAFKDV   81 (332)
T ss_pred             CCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhHHHhhhcccChhhhhccC
Confidence            45689999999999999999999999999999999999999998888999999999999999999999999999999999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehhhHH
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN  162 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~  162 (300)
                      |+.|+.+++||++||+|.|++..|++|++..++++++|++|+++++|++||++.++.++.+++|++|.+||.++|+||.+
T Consensus        82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~lTRLDhN  161 (332)
T KOG1496|consen   82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSALTRLDHN  161 (332)
T ss_pred             cEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhhCCCCchhcchhhhhhchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcCCcc
Q 022227          163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS  242 (300)
Q Consensus       163 R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~t  242 (300)
                      |+..++|.++|+..++|++++|||||+.+|||+..+|+|....+-+|+.|.++|+.|++.+|.+.||+||..||+.++.|
T Consensus       162 RA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~ark~S  241 (332)
T KOG1496|consen  162 RALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKARKLS  241 (332)
T ss_pred             hHHHHHHHhhCCchhhcceeEEecccccccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhhhhhh
Confidence            99999999999999999999999999999999999999976656799999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHhhhhccCCCc----------cccCCCCCeEEEEeEEE-CCeeeeeee
Q 022227          243 SALSAASSACDHIRDWVLGTPEV----------GSLLIFTPMIYTELVSW-LEPWTAIVG  291 (300)
Q Consensus       243 ~~~s~a~ai~~~~~~~~~~t~~~----------g~ygi~~~v~~s~Pv~~-~~~~~~~~~  291 (300)
                      |++|+|.|+|+|+++|+.||+++          |.||+|+|+.|||||.+ ++.|+.||+
T Consensus       242 SA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDGsYgip~gli~SfPv~~k~g~wkiVqg  301 (332)
T KOG1496|consen  242 SAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDGSYGIPDGLIFSFPVTIKNGDWKIVQG  301 (332)
T ss_pred             hhhhHHHhHhhhhhheecCCCCccEEEEeeecCCCCCCCCCeEEEcceEecCCceEEEcC
Confidence            99999999999999999999875          89999999999999999 999999986

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=100.00  E-value=2.2e-66  Score=484.42  Aligned_cols=282  Identities=42%  Similarity=0.610  Sum_probs=256.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      .+|.||+||||+|+||+++++.|+.++++++++++.|+|+|++.++++++|+++||+|+++++..++.++++.+++++||
T Consensus        42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kda  121 (387)
T TIGR01757        42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDA  121 (387)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCC
Confidence            35789999997799999999999999999988888999997766779999999999999877656677777889999999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCc-EEeeehhhH
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDH  161 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~-i~~~t~ld~  161 (300)
                      |+||++||.||++|++|.|++..|+++++++++.|+++++|++++|++|||+|+||+++++. +++|+++ |+++|.||+
T Consensus       122 DIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~-sg~~~~rviG~gT~LDs  200 (387)
T TIGR01757       122 DWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKN-APNIPRKNFHALTRLDE  200 (387)
T ss_pred             CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHH-cCCCcccEEEecchhHH
Confidence            99999999999999999999999999999999999998866899999999999999999998 5665555 789999999


Q ss_pred             HHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcCCc
Q 022227          162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKL  241 (300)
Q Consensus       162 ~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~  241 (300)
                      +|++++||+++++++++|+...||||||++|||+||+++|    +|+|+.+++++++|..++|.++++++|++|++.||+
T Consensus       201 aR~r~~LA~~l~v~~~~V~~~~V~GeHGds~vp~~S~a~V----~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~KG~  276 (387)
T TIGR01757       201 NRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNAKI----GGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKWGR  276 (387)
T ss_pred             HHHHHHHHHHHCcChhHcceeEEEecCCCcEEecceeeEE----CCEEhHHhcccccchHHHHHHHHHHHHHHHHhccCc
Confidence            9999999999999999997555699999999999999999    999999998776787789999999999999999998


Q ss_pred             cccchHHHHHHHHHhhhhccCCC----------ccc-cCCCCCeEEEEeEEE--CCeeeee
Q 022227          242 SSALSAASSACDHIRDWVLGTPE----------VGS-LLIFTPMIYTELVSW--LEPWTAI  289 (300)
Q Consensus       242 t~~~s~a~ai~~~~~~~~~~t~~----------~g~-ygi~~~v~~s~Pv~~--~~~~~~~  289 (300)
                      |+++++|.++++++++|++|+..          +|+ ||+|+|++||+||++  ++.|.++
T Consensus       277 t~~~s~a~ai~~~i~ai~~g~d~~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv  337 (387)
T TIGR01757       277 SSAASTAVSIADAIKSLVVPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELA  337 (387)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEEC
Confidence            88889999999999999865543          386 999999999999999  4899986

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK05442 malate dehydrogenase; Provisional

Probab=100.00  E-value=2.5e-66  Score=477.54  Aligned_cols=284  Identities=56%  Similarity=0.849  Sum_probs=256.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      ++|+||+||||+|+||+++++.|+.+++++.+.+.+++|+|+++++++++|+++||+|+.++...++.++++.+++++||
T Consensus         2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~da   81 (326)
T PRK05442          2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDA   81 (326)
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCC
Confidence            35679999997799999999999999998766677999999987667899999999999866555667778889999999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehhhHH
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN  162 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~  162 (300)
                      |+||++||.++++|++|.|++..|+++++++++.|+++++|++++|++|||+|++|++++++++++|++||.|.|.||++
T Consensus        82 DiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~t~LDs~  161 (326)
T PRK05442         82 DVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAMTRLDHN  161 (326)
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEeeeHHHHH
Confidence            99999999999999999999999999999999999999866899999999999999999999559999997666999999


Q ss_pred             HHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcCCcc
Q 022227          163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS  242 (300)
Q Consensus       163 R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~t  242 (300)
                      |+++++|+++++++++|++++||||||++|||+||+++|    +|+|+.+++.+++|..++|.++++++|++|+++||+|
T Consensus       162 R~r~~la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~~v----~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t  237 (326)
T PRK05442        162 RALSQLAAKAGVPVADIKKMTVWGNHSATQYPDFRHATI----DGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEARGAS  237 (326)
T ss_pred             HHHHHHHHHhCcChHHeEEeEEEECCcCceeeccccCEE----CCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCcCCc
Confidence            999999999999999999988899999999999999999    9999999987767767899999999999999999999


Q ss_pred             ccchHHHHHHHHHhhhhccC----------CCccccCCCCCeEEEEeEEE-CCeeeeee
Q 022227          243 SALSAASSACDHIRDWVLGT----------PEVGSLLIFTPMIYTELVSW-LEPWTAIV  290 (300)
Q Consensus       243 ~~~s~a~ai~~~~~~~~~~t----------~~~g~ygi~~~v~~s~Pv~~-~~~~~~~~  290 (300)
                      ++.+++.++++++++|+.++          ..+|+||+|+|++||+||++ ++.|.+|.
T Consensus       238 ~~~~a~~~~~~iv~ail~~~~~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig~Gv~~iv~  296 (326)
T PRK05442        238 SAASAANAAIDHVRDWVLGTPEGDWVSMGVPSDGSYGIPEGLIFGFPVTCENGEYEIVQ  296 (326)
T ss_pred             cHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCccCCcCCeEEEEEEEEcCcEEEEeC
Confidence            98555544799999988763          23499999999999999999 58998865

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=100.00  E-value=6e-66  Score=474.54  Aligned_cols=284  Identities=60%  Similarity=0.895  Sum_probs=258.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      ++|.||+||||+|+||+++++.|+.+++++.+.+.+++|+|++++.++++|+++||+|++.+...++.++++.+++++||
T Consensus         1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~da   80 (323)
T TIGR01759         1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDV   80 (323)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCC
Confidence            46899999997799999999999999988766677999999986667799999999999866555566777889999999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehhhHH
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN  162 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~  162 (300)
                      |+||++||.+|++|++|.|++..|+++++++++.|++++||++++|++|||+|+||+++++.++++|++|+.|+|.||++
T Consensus        81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~t~LDs~  160 (323)
T TIGR01759        81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIASKNAPDIPPKNFSAMTRLDHN  160 (323)
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEeeHHHHH
Confidence            99999999999999999999999999999999999999986899999999999999999999449999997667999999


Q ss_pred             HHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcCCcc
Q 022227          163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS  242 (300)
Q Consensus       163 R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~t  242 (300)
                      |+++++|+++|++|++|+.++||||||++|+|+||+++|    +|+|+.+++++++|+.++|.++++++|++|+++||+|
T Consensus       161 R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v----~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t  236 (323)
T TIGR01759       161 RAKYQLAAKAGVPVSDVKNVIIWGNHSNTQVPDFTHATV----DGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARGAS  236 (323)
T ss_pred             HHHHHHHHHhCcChHHeEEeEEEecCCCceeeccccCEE----CCccHHHHhcchhhHHHHHHHHHHhhHHHHHhccCCc
Confidence            999999999999999998777799999999999999999    9999999987765767899999999999999999999


Q ss_pred             ccchHHHHHHHHHhhhhccC----------CCcc-ccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          243 SALSAASSACDHIRDWVLGT----------PEVG-SLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       243 ~~~s~a~ai~~~~~~~~~~t----------~~~g-~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      ++.++|.++++++++|+.+.          +.+| +||+|+|+|||+||++  ++.|.++.
T Consensus       237 ~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~  297 (323)
T TIGR01759       237 SAASAANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVE  297 (323)
T ss_pred             chHHHHHHHHHHHHHHHcCCCCCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcC
Confidence            88778899999999988764          3348 9999999999999999  48999887

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=100.00  E-value=1e-64  Score=479.56  Aligned_cols=279  Identities=38%  Similarity=0.545  Sum_probs=253.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCe--EEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPV--ILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~--~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      ++.||+||||+|+||+++++.|+.+++|++++++  +|+|+|++  +++++|+++||+|+.+++..++.++++.|++++|
T Consensus        99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~--~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd  176 (444)
T PLN00112         99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERS--KQALEGVAMELEDSLYPLLREVSIGIDPYEVFQD  176 (444)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCC--cchhHHHHHHHHHhhhhhcCceEEecCCHHHhCc
Confidence            5789999997799999999999999888877766  78888886  5889999999999987766677777888999999


Q ss_pred             CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhh-hcCCCeEEEEecCchhhHHHHHHHHCCCCCCCc-EEeeehh
Q 022227           82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQ-HAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRL  159 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~-~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~-i~~~t~l  159 (300)
                      ||+||++||.||++||+|.|++..|++|++++++.|++ ++| ++++|++|||+|+||+++++. +++|+++ |+++|.|
T Consensus       177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p-~~ivIVVsNPvDv~t~v~~k~-sg~~~~rViGtgT~L  254 (444)
T PLN00112        177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASR-NVKVIVVGNPCNTNALICLKN-APNIPAKNFHALTRL  254 (444)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEcCCcHHHHHHHHHHH-cCCCCcceEEeeccH
Confidence            99999999999999999999999999999999999999 465 799999999999999999999 5665554 8999999


Q ss_pred             hHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcC
Q 022227          160 DHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKAR  239 (300)
Q Consensus       160 d~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~k  239 (300)
                      |++|++++||+++|+++++|+++.||||||++|||+||+++|    +|+|+.+++++++|+.++|.++++++|++|++.|
T Consensus       255 DsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V----~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~~k  330 (444)
T PLN00112        255 DENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKI----NGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKKW  330 (444)
T ss_pred             HHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEE----CCccHHHhhccccchHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999997765799999999999999999    9999999998777888899999999999999999


Q ss_pred             CccccchHHHHHHHHHhhhhccCC----------Ccc-ccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          240 KLSSALSAASSACDHIRDWVLGTP----------EVG-SLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       240 g~t~~~s~a~ai~~~~~~~~~~t~----------~~g-~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      |+|+++++|.++++++++|++|+.          .+| +||+++|++||+||++  ++.|.+++
T Consensus       331 G~t~~~s~a~ai~~~I~ail~~~d~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~  394 (444)
T PLN00112        331 GRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVK  394 (444)
T ss_pred             CchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECC
Confidence            988888999999999999885543          348 6999999999999999  58999884

>cd05295 MDH_like Malate dehydrogenase-like

Probab=100.00  E-value=2.6e-64  Score=476.58  Aligned_cols=284  Identities=32%  Similarity=0.574  Sum_probs=256.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +|.+|+||||+|++|+++++.|+.+.+||+++++.|+|+|+++++++++|++|||+|+++++..++.++++.+++|+|||
T Consensus       122 ~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~~~~ea~~daD  201 (452)
T cd05295         122 NPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLDVAFKDAH  201 (452)
T ss_pred             CceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEECCHHHhCCCC
Confidence            56899999999999999999999999999999999999999767789999999999999887767788888999999999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCe-EEEEecCchhhHHHHHHHHCCCCCCCcEEeeehhhHH
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC-KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN  162 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~-~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~  162 (300)
                      +||++||.||++|++|.|++..|++|+++++++|++++|++. ++|++|||+|++|+++++++|++|++||.+++.+|++
T Consensus       202 vvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~~k~apgiP~~rVig~gtlds~  281 (452)
T cd05295         202 VIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVARLQEN  281 (452)
T ss_pred             EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEecchHHH
Confidence            999999999999999999999999999999999999998554 5566679999999999999779999998888779999


Q ss_pred             HHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCC--------CcchhhhhcccccchhHHHHHHHhHHHH
Q 022227          163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG--------EKPVRELVKDDAWLNGEFITTVQQRGAA  234 (300)
Q Consensus       163 R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~--------g~p~~~~~~~~~~~~~~~~~~v~~~~~~  234 (300)
                      |++++||+++|+++++|++++||||||++|||+||+++|..||+        |+|+.+++.+++|..+++.+.++++++ 
T Consensus       282 R~r~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~v~~rg~-  360 (452)
T cd05295         282 RAKALLARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVATLKSLSS-  360 (452)
T ss_pred             HHHHHHHHHhCcCHHHceeeEEEEccCCceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHHHHHHHHH-
Confidence            99999999999999999887789999999999999999933221        299999987778888899999999999 


Q ss_pred             HHhcCCccccchHHHHHHHHHhhhhccCCC----------ccccCCCCCeEEEEeEEE-CCeeeeeee
Q 022227          235 IIKARKLSSALSAASSACDHIRDWVLGTPE----------VGSLLIFTPMIYTELVSW-LEPWTAIVG  291 (300)
Q Consensus       235 i~~~kg~t~~~s~a~ai~~~~~~~~~~t~~----------~g~ygi~~~v~~s~Pv~~-~~~~~~~~~  291 (300)
                        ++|| ++++|+|.|+++++++|+.+++.          +|+||+|+|++|||||++ ++-|..|++
T Consensus       361 --~rkg-sT~~siA~A~~~iv~ail~~t~~~~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~  425 (452)
T cd05295         361 --SLNH-EAAISPAHAIATTLSYWYHGSPPGEIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTD  425 (452)
T ss_pred             --hccC-ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeC
Confidence              4555 56679999999999999988742          399999999999999999 588998864

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=4.8e-64  Score=454.06  Aligned_cols=270  Identities=30%  Similarity=0.377  Sum_probs=245.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeC-ChhhhcCCCcE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT-DAVEACTGVNI   84 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~-~~~~a~~~aDv   84 (300)
                      +||+|||| |+||+++++.|+..++..     |++|+|++  +++++|.++||.|+.++......++. +.+++|+|||+
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~-----el~LiDi~--~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDi   72 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGS-----ELVLIDIN--EEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADI   72 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccc-----eEEEEEcc--cccccchhcchhhcchhccCceEEecCCChhhhcCCCE
Confidence            59999995 999999999997766533     89999998  57899999999999977655555554 45899999999


Q ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCc-EEeeehhhHHH
Q 022227           85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNR  163 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~-i~~~t~ld~~R  163 (300)
                      |+++||.||||||+|.||+..|++|++++++++.+++| +++++|+|||+|++||++++. +++|+++ |+++|.||++|
T Consensus        73 VvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtNPvD~~ty~~~k~-sg~p~~rvig~gt~LDsaR  150 (313)
T COG0039          73 VVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTNPVDILTYIAMKF-SGFPKNRVIGSGTVLDSAR  150 (313)
T ss_pred             EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEecCcHHHHHHHHHHh-cCCCccceecccchHHHHH
Confidence            99999999999999999999999999999999999998 789999999999999999998 7899888 78899999999


Q ss_pred             HHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhc-ccccchhHHHHHHHhHHHHHHhcCCcc
Q 022227          164 ALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVK-DDAWLNGEFITTVQQRGAAIIKARKLS  242 (300)
Q Consensus       164 ~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~-~~~~~~~~~~~~v~~~~~~i~~~kg~t  242 (300)
                      |+++||+++|+++++|+.++ +||||++|||+||+++|    +|+|+.++++ +++|..+++.++||++|++|+++||++
T Consensus       151 ~~~~lae~~~v~~~~V~~~V-iGeHGdt~vp~~S~a~v----~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~kG~~  225 (313)
T COG0039         151 FRTFLAEKLGVSPKDVHAYV-IGEHGDTMVPLWSQATV----GGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKGAG  225 (313)
T ss_pred             HHHHHHHHhCCChhHceeeE-eccCCCceEEeeeeeeE----CCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHccCcc
Confidence            99999999999999999996 78999999999999999    9999999998 567778899999999999999999875


Q ss_pred             ccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeeee
Q 022227          243 SALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIVG  291 (300)
Q Consensus       243 ~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~  291 (300)
                      +++++|.|+++++++|+.++        +.+|+|| ++|+|||+||++  +++|.++.-
T Consensus       226 t~~~~A~a~a~~~~ail~d~~~vl~~s~~l~G~yg-~~dv~~gvP~~lg~~Gv~~iie~  283 (313)
T COG0039         226 TYYGPAAALARMVEAILRDEKRVLPVSVYLDGEYG-VEDVYFGVPAVLGKNGVEEILEL  283 (313)
T ss_pred             chhhHHHHHHHHHHHHHcCCCceEEEEEeecCccC-cCCeEEEeeEEEcCCCcEEEecC
Confidence            67799999999999988654        4569999 679999999999  699988864

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=100.00  E-value=9e-63  Score=453.89  Aligned_cols=284  Identities=55%  Similarity=0.826  Sum_probs=256.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +|+||+||||+|+||+++++.|+.+++++.+++.+|+|+|++++.++++|+++||+|+.+++..+++++++.+++++|||
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daD   80 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDAD   80 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCC
Confidence            47899999977999999999999999988667789999999876778999999999998665556677778899999999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehhhHHH
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR  163 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R  163 (300)
                      +||++||.|+++|++|.|++..|+++++++++.|++++||++++|++|||+|+||+++++.++++|++++++.|.||++|
T Consensus        81 ivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ViG~t~LDs~R  160 (322)
T cd01338          81 WALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAMTRLDHNR  160 (322)
T ss_pred             EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChHheEEehHHHHHH
Confidence            99999999999999999999999999999999999999658999999999999999999984369999987779999999


Q ss_pred             HHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcCCccc
Q 022227          164 ALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS  243 (300)
Q Consensus       164 ~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~t~  243 (300)
                      +++.+|+++|+++++|++++||||||++++|+||++++    +|+|+.+++.+.+|..++|.++++++|++|+++||+|+
T Consensus       161 l~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v----~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~  236 (322)
T cd01338         161 AKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATI----GGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKARGASS  236 (322)
T ss_pred             HHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEE----CCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCcCCcc
Confidence            99999999999999999988899999999999999999    99999988877667678999999999999999999998


Q ss_pred             cchHHHHHHHHHhhhhccCC----------CccccCCCCCeEEEEeEEEC-Ceeeeeee
Q 022227          244 ALSAASSACDHIRDWVLGTP----------EVGSLLIFTPMIYTELVSWL-EPWTAIVG  291 (300)
Q Consensus       244 ~~s~a~ai~~~~~~~~~~t~----------~~g~ygi~~~v~~s~Pv~~~-~~~~~~~~  291 (300)
                      +.+++.++++++++|+.+..          .+|+||+|+|++||+||+++ +-|..|.+
T Consensus       237 ~~~~a~a~~~iv~ail~~~~~~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~  295 (322)
T cd01338         237 AASAANAAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEG  295 (322)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeC
Confidence            85444799999999887663          34999999999999999995 66777654

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd00704 MDH Malate dehydrogenase

Probab=100.00  E-value=3.2e-62  Score=450.42  Aligned_cols=281  Identities=56%  Similarity=0.861  Sum_probs=251.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      .||+||||+|+||+++++.|+.+++++++.+.+++|+|++++.++++++++||.|+.++....++++++.+++++|||+|
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV   80 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA   80 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence            48999998899999999999999998865666899999975447889999999999866655566777889999999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCC-CCCCcEEeeehhhHHHH
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS-IPAKNITCLTRLDHNRA  164 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~-~p~~~i~~~t~ld~~R~  164 (300)
                      |++||.|+++|++|.|++..|+++++++++.|++++.|++++|++|||+|+||+++++. ++ +|++||.++|.||++|+
T Consensus        81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~-sg~~p~~~vig~t~LDs~R~  159 (323)
T cd00704          81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKN-APNLPPKNFTALTRLDHNRA  159 (323)
T ss_pred             EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHH-cCCCCHHHEEEeeHHHHHHH
Confidence            99999999999999999999999999999999999733789999999999999999999 67 69999767799999999


Q ss_pred             HHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhh---cccccchhHHHHHHHhHHHHHHhcCCc
Q 022227          165 LGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV---KDDAWLNGEFITTVQQRGAAIIKARKL  241 (300)
Q Consensus       165 ~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~---~~~~~~~~~~~~~v~~~~~~i~~~kg~  241 (300)
                      |+++|++++++|++|++++||||||++|+|+||+++|    +|+|+.++.   .+++|..++|.++++++|++|+++||+
T Consensus       160 r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v----~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~kg~  235 (323)
T cd00704         160 KAQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVV----YGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKRGA  235 (323)
T ss_pred             HHHHHHHhCcCHHHceeeeEEecccCceeecccccee----cCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhccCc
Confidence            9999999999999998777899999999999999999    999998875   344676789999999999999999999


Q ss_pred             cccchHHHHHHHHHhhhhccCC----------Ccccc-CCCCCeEEEEeEEEC-Ceeeeeee
Q 022227          242 SSALSAASSACDHIRDWVLGTP----------EVGSL-LIFTPMIYTELVSWL-EPWTAIVG  291 (300)
Q Consensus       242 t~~~s~a~ai~~~~~~~~~~t~----------~~g~y-gi~~~v~~s~Pv~~~-~~~~~~~~  291 (300)
                      |++.++|.|+++++++|+.+..          .+|+| |+|+|++||+||+++ +-|..|..
T Consensus       236 t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~  297 (323)
T cd00704         236 SSAASAAKAIADHVKDWLFGTPPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVED  297 (323)
T ss_pred             chhHHHHHHHHHHHHHHHhCCCCCcEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecC
Confidence            9986789999999999987655          34899 999999999999995 67776643

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=100.00  E-value=3.8e-61  Score=444.17  Aligned_cols=287  Identities=65%  Similarity=0.983  Sum_probs=253.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +|.||+||||+|+||+++++.|+.+++++++...+++|+|++++.++++++++|+.|++.+...++..+.+++++++|||
T Consensus         1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aD   80 (325)
T cd01336           1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVD   80 (325)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCC
Confidence            47899999988999999999999988875444458999999765567889999999988665556766777789999999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehhhHHH
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR  163 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R  163 (300)
                      +|||+||.+++++++|.+++..|+++++++++.|+++++|++++|++|||+|+||+++++..+++|+++|+++|.||++|
T Consensus        81 iVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~~ig~gt~LDs~R  160 (325)
T cd01336          81 VAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNR  160 (325)
T ss_pred             EEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHHHEEeeehHHHHH
Confidence            99999999999999999999999999999999999998668999999999999999999996688888899999999999


Q ss_pred             HHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcCCccc
Q 022227          164 ALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS  243 (300)
Q Consensus       164 ~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~t~  243 (300)
                      +++++|+++++++++|++++||||||++|||+||+++|..|.-|+|+.+++++++|..++|.++++++|++|+++|+.++
T Consensus       161 ~r~~la~~l~v~~~~v~~~~V~GeHG~s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~~~g~t  240 (325)
T cd01336         161 AKSQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKARKLSS  240 (325)
T ss_pred             HHHHHHHHhCcChhhceEeEEEEcCCCCeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHHHccccch
Confidence            99999999999999999887899999999999999999222229999999877667778999999999999999866566


Q ss_pred             cchHHHHHHHHHhhhhccC----------CCccccCCCCCeEEEEeEEEC-Ceeeeee
Q 022227          244 ALSAASSACDHIRDWVLGT----------PEVGSLLIFTPMIYTELVSWL-EPWTAIV  290 (300)
Q Consensus       244 ~~s~a~ai~~~~~~~~~~t----------~~~g~ygi~~~v~~s~Pv~~~-~~~~~~~  290 (300)
                      ++++|.++++++++|+.++          ..+|+||+|+|++||+||+++ +-|..|.
T Consensus       241 ~~~~a~~~~~i~~ail~~~~~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~  298 (325)
T cd01336         241 AMSAAKAICDHVHDWWFGTPEGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQ  298 (325)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEec
Confidence            6799999999999988764          234999999999999999995 5677764

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=2.7e-61  Score=444.45  Aligned_cols=280  Identities=66%  Similarity=1.022  Sum_probs=247.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEEE
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAV   86 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvVi   86 (300)
                      ||+||||+|+||+++++.|+.+++++.+.+.+++|+|++++.++++++++||.|++.++...+..+++.+++++|||+||
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            68999977999999999999999886444557999999876667999999999998665555655557789999999999


Q ss_pred             EeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHH
Q 022227           87 MVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG  166 (300)
Q Consensus        87 ~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~  166 (300)
                      ++||.|++++++|.+++..|+++++++++.|+++++|++++|++|||+|+||+++++++.++|+++|+++|.||++|+++
T Consensus        81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~~vig~gt~LDs~R~r~  160 (324)
T TIGR01758        81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALA  160 (324)
T ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCcceEEEeeehHHHHHHH
Confidence            99999999999999999999999999999999997347999999999999999999995456666689999999999999


Q ss_pred             HHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCC-C---cchhhhhcccccchhHHHHHHHhHHHHHHhcCCcc
Q 022227          167 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG-E---KPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS  242 (300)
Q Consensus       167 ~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~-g---~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~t  242 (300)
                      ++|+++|+++++|++++||||||++|||+||+++|    + |   +|+.+++++++|+.++|.++++++|++|+++||.+
T Consensus       161 ~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v----~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~~  236 (324)
T TIGR01758       161 QVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHATV----TKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRARKLS  236 (324)
T ss_pred             HHHHHhCCChhhceEeEEEECCCCCccccccccee----cCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhccCCC
Confidence            99999999999998766799999999999999999    8 9   99999987755767899999999999999988866


Q ss_pred             ccchHHHHHHHHHhhhhcc----------CCCccc-cCCCCCeEEEEeEEE-CCeeeeee
Q 022227          243 SALSAASSACDHIRDWVLG----------TPEVGS-LLIFTPMIYTELVSW-LEPWTAIV  290 (300)
Q Consensus       243 ~~~s~a~ai~~~~~~~~~~----------t~~~g~-ygi~~~v~~s~Pv~~-~~~~~~~~  290 (300)
                      +++++|.++++++++|++|          +..+|+ ||+|+|++||+||++ ++.|..|.
T Consensus       237 t~~~ia~~~~~i~~ai~~~~~~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~  296 (324)
T TIGR01758       237 SALSAAKAAVDQMHDWVLGTPEGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVE  296 (324)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEec
Confidence            7779999999999998743          234599 999999999999999 58888775

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=4.4e-60  Score=433.40  Aligned_cols=267  Identities=18%  Similarity=0.254  Sum_probs=235.7

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-cccEEEeCChhhhcCCCcEE
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-~~~v~~~~~~~~a~~~aDvV   85 (300)
                      ||+||| +|+||+++++.|+.+++++     |++|+|++  +++++|+++||+|+.... ..+++++++.+++++|||+|
T Consensus         1 Ki~IIG-aG~VG~~~a~~l~~~~~~~-----elvL~Di~--~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDiv   72 (307)
T cd05290           1 KLVVIG-AGHVGSAVLNYALALGLFS-----EIVLIDVN--EGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADII   72 (307)
T ss_pred             CEEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEeCC--cchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEE
Confidence            799999 6999999999999998876     89999996  478999999999976433 23455555678999999999


Q ss_pred             EEeCCCCCCCCCc--HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCc-EEeeehhhHH
Q 022227           86 VMVGGFPRKEGME--RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHN  162 (300)
Q Consensus        86 i~~ag~~~~~g~~--r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~-i~~~t~ld~~  162 (300)
                      |++||.||+||++  |.|++..|+++++++++.+++++| ++++|++|||+|+||+++++. +++|+++ |+.+|.||++
T Consensus        73 vitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p-~~i~ivvsNPvDv~t~~~~k~-sg~p~~rviG~gt~LDs~  150 (307)
T cd05290          73 VITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTK-EAVIILITNPLDIAVYIAATE-FDYPANKVIGTGTMLDTA  150 (307)
T ss_pred             EECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEecCcHHHHHHHHHHH-hCcChhheecccchHHHH
Confidence            9999999999999  699999999999999999999997 789999999999999999998 7999988 5778999999


Q ss_pred             HHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcc---cccchhHHHHHHHhHHHHHHhcC
Q 022227          163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD---DAWLNGEFITTVQQRGAAIIKAR  239 (300)
Q Consensus       163 R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~---~~~~~~~~~~~v~~~~~~i~~~k  239 (300)
                      |+++++|+++|+++++|+++ ||||||++|+|+||+++|    +|+|+.+++..   +.|..+++.++++++|++|+++|
T Consensus       151 R~~~~la~~l~v~~~~V~~~-ViGeHGds~vp~wS~~~v----~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~K  225 (307)
T cd05290         151 RLRRIVADKYGVDPKNVTGY-VLGEHGSHAFPVWSLVNI----AGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRK  225 (307)
T ss_pred             HHHHHHHHHhCCCcccEEEE-EEecCCCceEEeeeeeEE----CCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999999999999 599999999999999999    99999998742   23446789999999999999999


Q ss_pred             CccccchHHHHHHHHHhhhhc--------cCCCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          240 KLSSALSAASSACDHIRDWVL--------GTPEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       240 g~t~~~s~a~ai~~~~~~~~~--------~t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      |.|+| ++|.++++++++|+.        +++..|+|| ++|+|||+||++  ++++..+.
T Consensus       226 G~t~~-~ia~a~~~ii~ail~d~~~v~~vsv~~~G~yg-~~~v~~svP~~ig~~Gv~~i~~  284 (307)
T cd05290         226 GWTNA-GIAKSASRLIKAILLDERSILPVCTLLSGEYG-LSDVALSLPTVIGAKGIERVLE  284 (307)
T ss_pred             CeehH-HHHHHHHHHHHHHHhCCCeEEEEEEeeCCccC-CCCEEEEEEEEEeCCCceEecC
Confidence            98886 678899999998774        345569999 679999999999  46555543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2.6e-59  Score=405.27  Aligned_cols=271  Identities=24%  Similarity=0.312  Sum_probs=242.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-cccEEEeCChhhhcCCCc
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGVN   83 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-~~~v~~~~~~~~a~~~aD   83 (300)
                      ..||.|+| +|+||.+++..++.+++.+     |++|+|.+  +++++|++|||+|.+.++ ..+++...| |.+.++++
T Consensus        20 ~~KItVVG-~G~VGmAca~siL~k~Lad-----el~lvDv~--~dklkGE~MDLqH~s~f~~~~~V~~~~D-y~~sa~S~   90 (332)
T KOG1495|consen   20 HNKITVVG-VGQVGMACAISILLKGLAD-----ELVLVDVN--EDKLKGEMMDLQHGSAFLSTPNVVASKD-YSVSANSK   90 (332)
T ss_pred             CceEEEEc-cchHHHHHHHHHHHhhhhh-----ceEEEecC--cchhhhhhhhhccccccccCCceEecCc-ccccCCCc
Confidence            46999999 7999999999999999876     89999997  478999999999987443 467776655 68899999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCc-EEeeehhhHH
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHN  162 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~-i~~~t~ld~~  162 (300)
                      +||+|||..+++|++|++++++|+.+|+.+.+.+.+|.| ++++|++|||+|+|||+.||. ++||++| |+.||.||++
T Consensus        91 lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySp-d~~llvvSNPVDilTYv~wKL-SgfP~nRViGsGcnLDsa  168 (332)
T KOG1495|consen   91 LVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSP-DCILLVVSNPVDILTYVTWKL-SGFPKNRVIGSGCNLDSA  168 (332)
T ss_pred             EEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCC-CeEEEEecCchHHHHHHHHHH-cCCcccceeccCcCccHH
Confidence            999999999999999999999999999999999999986 899999999999999999999 8999998 6889999999


Q ss_pred             HHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcc-------cccchhHHHHHHHhHHHHH
Q 022227          163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD-------DAWLNGEFITTVQQRGAAI  235 (300)
Q Consensus       163 R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~-------~~~~~~~~~~~v~~~~~~i  235 (300)
                      |||+.++++||++|.++++++ +||||++.+|.||.+.|    .|.++.++..+       +.|  +++.++|.+.+|||
T Consensus       169 RFryLi~~~Lg~~pss~hgwI-iGEHGdSsV~vWSgvni----AGv~l~~l~~~~~t~~d~e~w--~eihK~v~~sayev  241 (332)
T KOG1495|consen  169 RFRYLIGNRLGVHPSSCHGWI-IGEHGDSSVPVWSGVNI----AGVSLKDLNPDLGTDYDPENW--KEIHKQVVDSAYEV  241 (332)
T ss_pred             HHHHHHHHHhCCCcccceEEE-eeccCCccceecccccc----cceEHhHhChhhcCCCCHHHH--HHHHHHHHHHHHHH
Confidence            999999999999999999997 79999999999999999    99999998643       235  48999999999999


Q ss_pred             HhcCCccccchHHHHHHHHHhhhh--------ccCCCccccCCCCCeEEEEeEEE--CCeeeeeeeccc
Q 022227          236 IKARKLSSALSAASSACDHIRDWV--------LGTPEVGSLLIFTPMIYTELVSW--LEPWTAIVGHLG  294 (300)
Q Consensus       236 ~~~kg~t~~~s~a~ai~~~~~~~~--------~~t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~~~~  294 (300)
                      +++||+|+| +.+.++++.+++++        .+|...|.|||.+|||||+||.+  ++..+.|-+||-
T Consensus       242 iklKGyTsw-aIglsva~l~~ail~n~~~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~~Lt  309 (332)
T KOG1495|consen  242 IKLKGYTSW-AIGLSVADLAQAILRNLRRIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQKLT  309 (332)
T ss_pred             HHhcCchHH-HHHHHHHHHHHHHHhCcCceeeeeeccccccCCCCceEEecceeecCCchhhhhcccCC
Confidence            999999997 56666666665543        57777899999999999999999  688888888763

>PLN00135 malate dehydrogenase

Probab=100.00  E-value=6.3e-59  Score=424.87  Aligned_cols=265  Identities=83%  Similarity=1.199  Sum_probs=235.0

Q ss_pred             HHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHH
Q 022227           25 IARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMS  104 (300)
Q Consensus        25 L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~  104 (300)
                      |+++.+||.++++.++|+|+++++++++|+++||.|++.++...+..+++.+++++|||+||++||.|+++|++|.|++.
T Consensus         2 ~~~g~~~g~~~~~~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~   81 (309)
T PLN00135          2 IARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMS   81 (309)
T ss_pred             cccccccCCCCeEEEEEecCcccccchhhHHHHHHhhhHHhcCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHH
Confidence            45677888888899999999876789999999999998665556666667789999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhh-cCCCeEEEEecCchhhHHHHHHHHCCCCCCCc-EEeeehhhHHHHHHHHHHHcCCCCCCeEEE
Q 022227          105 KNVSIYKAQASALEQH-AAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRALGQISEKLNVQVSDVKNV  182 (300)
Q Consensus       105 ~N~~i~~~i~~~i~~~-~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~-i~~~t~ld~~R~~~~la~~l~v~~~~V~~~  182 (300)
                      .|+++++++++.|+++ +| ++++|++|||+|+||+++++. +++|+++ |+++|.||++||++.+|+++|+++++|+..
T Consensus        82 ~N~~I~~~i~~~i~~~~~p-~aivivvsNPvDv~t~~~~~~-sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~  159 (309)
T PLN00135         82 KNVSIYKSQASALEKHAAP-DCKVLVVANPANTNALILKEF-APSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNV  159 (309)
T ss_pred             HHHHHHHHHHHHHHHhcCC-CeEEEEeCCcHHHHHHHHHHH-cCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceee
Confidence            9999999999999996 66 899999999999999999998 6887766 799999999999999999999999999543


Q ss_pred             EEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcCCccccchHHHHHHHHHhhhhccC
Q 022227          183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGT  262 (300)
Q Consensus       183 ~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~t~~~s~a~ai~~~~~~~~~~t  262 (300)
                      .||||||++|||+||+++|++|++|+|+.+++.+++|+.++|.++++++|++|+++|+.++++++|.++++++++|+.++
T Consensus       160 ~VlGeHG~s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~kg~t~~~ia~a~~~iv~ai~~~~  239 (309)
T PLN00135        160 IIWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGT  239 (309)
T ss_pred             EEEEcCCCceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhCC
Confidence            45999999999999999999999999999987666676789999999999999998544555799999999999988753


Q ss_pred             ----------CCccccCCCCCeEEEEeEEE-CCeeeeeee
Q 022227          263 ----------PEVGSLLIFTPMIYTELVSW-LEPWTAIVG  291 (300)
Q Consensus       263 ----------~~~g~ygi~~~v~~s~Pv~~-~~~~~~~~~  291 (300)
                                ..+|+||+|+|++||+||++ .+.|..|..
T Consensus       240 ~~~~v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~  279 (309)
T PLN00135        240 PEGTWVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQG  279 (309)
T ss_pred             cCCeEEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecC
Confidence                      33499999889999999999 588888743

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=100.00  E-value=9.5e-59  Score=424.74  Aligned_cols=264  Identities=35%  Similarity=0.568  Sum_probs=233.5

Q ss_pred             HHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEEEEeCCCCCCCCCcHHH
Q 022227           22 VPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKD  101 (300)
Q Consensus        22 a~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~d  101 (300)
                      .+.|+++++|| ++++.++|+|+++++++++|+++||.|+.++.......+++.+++++|||+||++||.||++|++|.|
T Consensus         2 ~~~~~~g~~~g-~~~~~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~d   80 (313)
T TIGR01756         2 SHWIANGDLYG-NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRAD   80 (313)
T ss_pred             cceeccCcccC-CCeEEEEEecCCCccchhHhHHHHHHHhccccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHH
Confidence            35677888999 89999999999887799999999999998544433445667668999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHH-HHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          102 VMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK-EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       102 l~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~-~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      ++..|+++++++++.|++++|+++++|++|||+|+||++++ +. +++|+++|+++|.||++|++++||++++++|++|+
T Consensus        81 ll~~N~~I~~~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~~~~-sg~p~~vig~gt~LDsaR~r~~la~~l~v~~~~V~  159 (313)
T TIGR01756        81 LLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLHA-PKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIY  159 (313)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCchHHHHHHHHHHc-CCCCHHHEEecccHHHHHHHHHHHHHhCcChhhee
Confidence            99999999999999999999877899999999999999995 65 89998888999999999999999999999999998


Q ss_pred             EEEEecCCCCceeeeccceeeeccCCCcchhhh--hcccccchhHHHHHHHhHHHHHHhcCCccccchHHHHHHHHHhhh
Q 022227          181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVREL--VKDDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDW  258 (300)
Q Consensus       181 ~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~--~~~~~~~~~~~~~~v~~~~~~i~~~kg~t~~~s~a~ai~~~~~~~  258 (300)
                      +++||||||++|||+||+++|+.  +|+|+..+  +. ++|..+++.++++++|++|+++||+|++.++|.++++++++|
T Consensus       160 ~~~V~GeHG~s~vp~~S~~~V~~--~G~~~~~~~~~~-~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~~a~ai~~iv~ai  236 (313)
T TIGR01756       160 HVVVWGNHAESMVADLTHAEFTK--NGKHQKVFDELC-RDYPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAW  236 (313)
T ss_pred             eeEEEECCCCceeecccccEEec--CCeehhHhhhcC-cHhHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHHH
Confidence            88779999999999999999964  78886554  42 246678999999999999999999888866778999999999


Q ss_pred             hccCC----------C--ccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          259 VLGTP----------E--VGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       259 ~~~t~----------~--~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      +.++.          .  +|+||+|+|++||+||++  ++.|.+|.
T Consensus       237 l~~~~~~~i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive  282 (313)
T TIGR01756       237 LFGTRPGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVE  282 (313)
T ss_pred             hcCCCCCeEEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcC
Confidence            87543          2  249999999999999999  58999987

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=100.00  E-value=2.6e-58  Score=420.77  Aligned_cols=264  Identities=20%  Similarity=0.245  Sum_probs=236.8

Q ss_pred             EEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEEEEeC
Q 022227           10 VTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVG   89 (300)
Q Consensus        10 IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvVi~~a   89 (300)
                      ||| +|+||+++++.|+.+++++     |++|+|++  +++++|+++||+|+..++..++.++.+.+++++|||+||++|
T Consensus         1 iIG-aG~VG~~~a~~l~~~~l~~-----el~L~Di~--~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVita   72 (299)
T TIGR01771         1 IIG-AGNVGSSTAFALLNQGIAD-----EIVLIDIN--KDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITA   72 (299)
T ss_pred             CCC-cCHHHHHHHHHHHhcCCCC-----EEEEEeCC--CChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECC
Confidence            689 7999999999999998876     89999996  478999999999998666556667777799999999999999


Q ss_pred             CCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-EeeehhhHHHHHHHH
Q 022227           90 GFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHNRALGQI  168 (300)
Q Consensus        90 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~ld~~R~~~~l  168 (300)
                      |.||+|||+|.|++..|+++++++++.+++++| ++++|++|||+|++|++++++ +++|++++ +.+|.||++|+++++
T Consensus        73 g~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p-~~~vivvsNP~d~~t~~~~~~-sg~p~~~viG~gt~LDs~R~~~~l  150 (299)
T TIGR01771        73 GAPQKPGETRLELVGRNVRIMKSIVPEVVKSGF-DGIFLVATNPVDILTYVAWKL-SGFPKNRVIGSGTVLDTARLRYLL  150 (299)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHH-hCCCHHHEEeccchHHHHHHHHHH
Confidence            999999999999999999999999999999997 789999999999999999998 79999885 778999999999999


Q ss_pred             HHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcc----cccchhHHHHHHHhHHHHHHhcCCcccc
Q 022227          169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD----DAWLNGEFITTVQQRGAAIIKARKLSSA  244 (300)
Q Consensus       169 a~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~----~~~~~~~~~~~v~~~~~~i~~~kg~t~~  244 (300)
                      |+++++++.+|+++ ||||||++|+|+||+++|    +|+|+.+++++    ++|..+++.++++++|++|++.||+|++
T Consensus       151 a~~l~v~~~~V~~~-v~GeHG~s~vp~~S~~~v----~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kG~t~~  225 (299)
T TIGR01771       151 AEKLGVDPQSVHAY-IIGEHGDSEVPVWSSATI----GGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRKGATYY  225 (299)
T ss_pred             HHHhCcCcCeEEEE-EEecCCCceeeceeeeEE----CCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcCCeeeH
Confidence            99999999999998 599999999999999999    99999998754    1334578999999999999999998775


Q ss_pred             chHHHHHHHHHhhhhcc--------CCCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          245 LSAASSACDHIRDWVLG--------TPEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       245 ~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                       ++|.++++++++|+.+        ++..|+||++ |+|||+||++  ++.+..+.
T Consensus       226 -~~a~a~~~~i~ail~d~~~v~~~s~~~~g~yg~~-~~~~s~P~~ig~~Gv~~i~~  279 (299)
T TIGR01771       226 -GIGMAVARIVEAILHDENRVLPVSAYLDGEYGIK-DVYIGVPAVLGRNGVEEIIE  279 (299)
T ss_pred             -HHHHHHHHHHHHHHcCCCcEEEEEEEecccCCCC-CEEEEEEEEEeCCeeEEEcc
Confidence             6788999999998754        4556899985 8999999999  57777764

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=100.00  E-value=1e-57  Score=419.91  Aligned_cols=272  Identities=21%  Similarity=0.285  Sum_probs=240.1

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      |++.++||+||| +|.||+++++.|+..++++     +|+|+|++  +++++|+++||+|+.... .++.++++.+++++
T Consensus         2 ~~~~~~ki~iiG-aG~vG~~~a~~l~~~~~~~-----el~L~D~~--~~~~~g~~~Dl~~~~~~~-~~~~i~~~~~~~~~   72 (315)
T PRK00066          2 MKKQHNKVVLVG-DGAVGSSYAYALVNQGIAD-----ELVIIDIN--KEKAEGDAMDLSHAVPFT-SPTKIYAGDYSDCK   72 (315)
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEeCC--CchhHHHHHHHHhhcccc-CCeEEEeCCHHHhC
Confidence            556778999999 5999999999999988876     89999996  478999999999998333 45666667789999


Q ss_pred             CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-Eeeehh
Q 022227           81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRL  159 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~l  159 (300)
                      |||+||++||.||+||++|.|++..|+++++++++.+++++| ++++|++|||+|+++++++++ +++|++++ +.+|.|
T Consensus        73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~-~~~vivvsNP~d~~~~~~~k~-sg~p~~~viG~gt~L  150 (315)
T PRK00066         73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGF-DGIFLVASNPVDILTYATWKL-SGFPKERVIGSGTSL  150 (315)
T ss_pred             CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEccCcHHHHHHHHHHH-hCCCHHHEeecCchH
Confidence            999999999999999999999999999999999999999997 789999999999999999998 78999886 667999


Q ss_pred             hHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccch----hHHHHHHHhHHHHH
Q 022227          160 DHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLN----GEFITTVQQRGAAI  235 (300)
Q Consensus       160 d~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~----~~~~~~v~~~~~~i  235 (300)
                      |+.|+++.+|+++|+++++|++++ |||||++|+|+||+++|    +|+|+.+++.+..|..    +++.++++++|++|
T Consensus       151 Ds~R~~~~la~~l~v~~~~V~~~v-iGeHG~s~v~~~S~~~v----~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~i  225 (315)
T PRK00066        151 DSARFRYMLSEKLDVDPRSVHAYI-IGEHGDTEFPVWSHANV----AGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEI  225 (315)
T ss_pred             HHHHHHHHHHHHhCCCcccEEEEE-EecCCCcceecceeceE----CCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999985 89999999999999999    9999999987655543    47999999999999


Q ss_pred             HhcCCccccchHHHHHHHHHhhhhc--------cCCCccccCCCCCeEEEEeEEEC-Ceeeeee
Q 022227          236 IKARKLSSALSAASSACDHIRDWVL--------GTPEVGSLLIFTPMIYTELVSWL-EPWTAIV  290 (300)
Q Consensus       236 ~~~kg~t~~~s~a~ai~~~~~~~~~--------~t~~~g~ygi~~~v~~s~Pv~~~-~~~~~~~  290 (300)
                      ++.||+|++ ++|.++++++++++.        |+...|+|| ++|+|||+||+++ +-|..+.
T Consensus       226 i~~kg~t~~-~~a~~~~~i~~ail~~~~~v~~~sv~~~g~yg-~~~v~~S~Pv~ig~~Gv~~i~  287 (315)
T PRK00066        226 IEKKGATYY-GIAMALARITKAILNNENAVLPVSAYLEGQYG-EEDVYIGVPAVVNRNGIREIV  287 (315)
T ss_pred             HhcCCeehH-HHHHHHHHHHHHHHcCCCeEEEEEEEeccccC-CCCEEEEeEEEEeCCcEEEEc
Confidence            999998885 788889999988764        345559999 6799999999994 4455443

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=1.6e-57  Score=417.66  Aligned_cols=270  Identities=24%  Similarity=0.259  Sum_probs=236.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-cccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-~~~v~~~~~~~~a~~~a   82 (300)
                      +.+||+||| +|+||+++++.|+.+++..     |++|+|+++  ++++|+++||+|+.... ...+..+++ +++++||
T Consensus         2 ~~~Ki~IiG-aG~VG~~~a~~l~~~~~~~-----el~LiD~~~--~~~~g~a~Dl~~~~~~~~~~~v~~~~d-y~~~~~a   72 (312)
T cd05293           2 PRNKVTVVG-VGQVGMACAISILAKGLAD-----ELVLVDVVE--DKLKGEAMDLQHGSAFLKNPKIEADKD-YSVTANS   72 (312)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEeCCc--cHHHHHHHHHHHhhccCCCCEEEECCC-HHHhCCC
Confidence            457999999 6999999999999988765     899999974  68999999999998322 234554444 6789999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCc-EEeeehhhH
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDH  161 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~-i~~~t~ld~  161 (300)
                      |+||++||.++++||+|.|++.+|+++++++++.|++++| ++++|++|||+|++|++++++ +++|++| |+.+|.||+
T Consensus        73 divvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p-~~~vivvsNP~d~~t~~~~k~-sg~p~~~viG~gt~Ld~  150 (312)
T cd05293          73 KVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSP-NAILLVVSNPVDIMTYVAWKL-SGLPKHRVIGSGCNLDS  150 (312)
T ss_pred             CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEccChHHHHHHHHHHH-hCCCHHHEEecCchHHH
Confidence            9999999999999999999999999999999999999997 689999999999999999998 7999998 566799999


Q ss_pred             HHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcc-----cccchhHHHHHHHhHHHHHH
Q 022227          162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD-----DAWLNGEFITTVQQRGAAII  236 (300)
Q Consensus       162 ~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~-----~~~~~~~~~~~v~~~~~~i~  236 (300)
                      +|+++.+|+++++++++|++++ |||||++|+|+||+++|    +|+|+.+++..     ++...+++.++++++|++|+
T Consensus       151 ~R~~~~la~~l~v~~~~v~~~v-~GeHG~s~vp~~S~~~i----~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii  225 (312)
T cd05293         151 ARFRYLIAERLGVAPSSVHGWI-IGEHGDSSVPVWSGVNV----AGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVI  225 (312)
T ss_pred             HHHHHHHHHHhCCChhhEEEEE-eecCCCCccccceeceE----CCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999986 89999999999999999    99999998632     11123689999999999999


Q ss_pred             hcCCccccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          237 KARKLSSALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       237 ~~kg~t~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      ++||.|++ ++|.++++++++|+.++        +.+|.||+|+|++||+||++  ++.|..+.
T Consensus       226 ~~kg~t~~-~~a~a~~~ii~ail~d~~~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~  288 (312)
T cd05293         226 KLKGYTSW-AIGLSVADLVDAILRNTGRVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIK  288 (312)
T ss_pred             HhcCCchH-HHHHHHHHHHHHHHcCCCeEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEec
Confidence            99997775 78899999999987543        44589999999999999999  58777764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02602 lactate dehydrogenase

Probab=100.00  E-value=1.8e-57  Score=421.88  Aligned_cols=266  Identities=21%  Similarity=0.298  Sum_probs=231.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEe-CChhhhcCCCcE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT-TDAVEACTGVNI   84 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~-~~~~~a~~~aDv   84 (300)
                      +||+||| +|+||+++++.|+..++++     |++|+|+++  ++++|+++||+|++..+.. ..++ +..+++++|||+
T Consensus        38 ~KI~IIG-aG~VG~~~a~~l~~~~l~~-----el~LiDi~~--~~~~g~a~DL~~~~~~~~~-~~i~~~~dy~~~~daDi  108 (350)
T PLN02602         38 TKVSVVG-VGNVGMAIAQTILTQDLAD-----ELALVDVNP--DKLRGEMLDLQHAAAFLPR-TKILASTDYAVTAGSDL  108 (350)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCCC-----EEEEEeCCC--chhhHHHHHHHhhhhcCCC-CEEEeCCCHHHhCCCCE
Confidence            6999999 6999999999999988876     899999974  7899999999998743322 3343 234788999999


Q ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-EeeehhhHHH
Q 022227           85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHNR  163 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~ld~~R  163 (300)
                      ||++||.++++|++|.|++.+|+++++++++.|++++| ++++|++|||+|++|++++++ +++|++|+ +.+|.||++|
T Consensus       109 VVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p-~~ivivvtNPvdv~t~~~~k~-sg~p~~rviG~gt~LDs~R  186 (350)
T PLN02602        109 CIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSP-DTILLIVSNPVDVLTYVAWKL-SGFPANRVIGSGTNLDSSR  186 (350)
T ss_pred             EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCchHHHHHHHHHH-hCCCHHHEEeecchHHHHH
Confidence            99999999999999999999999999999999999997 689999999999999999998 68999996 6678999999


Q ss_pred             HHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhccc------ccchhHHHHHHHhHHHHHHh
Q 022227          164 ALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD------AWLNGEFITTVQQRGAAIIK  237 (300)
Q Consensus       164 ~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~------~~~~~~~~~~v~~~~~~i~~  237 (300)
                      +++++|+++|+++++|++++ |||||++|+|+||+++|    +|+|+.+++.+.      +| .+++.++++++|++|++
T Consensus       187 ~r~~lA~~l~v~~~~V~~~V-iGeHGds~vp~wS~~~i----~G~pl~~~~~~~~~~~~~~~-~~~i~~~v~~~g~eIi~  260 (350)
T PLN02602        187 FRFLIADHLDVNAQDVQAYI-VGEHGDSSVALWSSVSV----GGVPVLSFLEKQQIAYEKET-LEEIHRAVVDSAYEVIK  260 (350)
T ss_pred             HHHHHHHHhCCCccceeeeE-EecCCCceEeeeeeeeE----CCEEHHHHhhccCCccCHHH-HHHHHHHHHHHHHHHHh
Confidence            99999999999999999985 89999999999999999    999999986531      22 36799999999999999


Q ss_pred             cCCccccchHHHHHHHHHhhhhc--------cCCCccccCC-CCCeEEEEeEEE--CCeeeee
Q 022227          238 ARKLSSALSAASSACDHIRDWVL--------GTPEVGSLLI-FTPMIYTELVSW--LEPWTAI  289 (300)
Q Consensus       238 ~kg~t~~~s~a~ai~~~~~~~~~--------~t~~~g~ygi-~~~v~~s~Pv~~--~~~~~~~  289 (300)
                      .||.|++ ++|.++++++++++.        ++..+|+||+ ++|+|||+||++  ++.+.++
T Consensus       261 ~KG~t~~-gia~a~a~ii~ail~d~~~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~  322 (350)
T PLN02602        261 LKGYTSW-AIGYSVASLVRSLLRDQRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVV  322 (350)
T ss_pred             cCCccHH-HHHHHHHHHHHHHHhcCCCeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEe
Confidence            9997774 788888888887653        4555699999 489999999999  4555554

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=100.00  E-value=7.5e-56  Score=407.07  Aligned_cols=267  Identities=24%  Similarity=0.320  Sum_probs=235.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||+|+| +|.+|+++++.|+..++..     +|+|+|+++  +++++.++||.|+..+......+..+.++++++||+|
T Consensus         1 ~kI~IIG-aG~vG~~~a~~l~~~g~~~-----ei~l~D~~~--~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIV   72 (306)
T cd05291           1 RKVVIIG-AGHVGSSFAYSLVNQGIAD-----ELVLIDINE--EKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIV   72 (306)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEeCCc--chhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEE
Confidence            4899999 6999999999999888754     899999974  6789999999998754444444445667889999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCc-EEeeehhhHHHH
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRA  164 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~-i~~~t~ld~~R~  164 (300)
                      |+++|.|+++|++|.|++.+|+++++++++.+++++| ++++|++|||+|++|++++++ +++|+++ |+.+|.||++|+
T Consensus        73 Iitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vivvsNP~d~~~~~~~~~-~g~p~~~v~g~gt~LDs~R~  150 (306)
T cd05291          73 VITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLVASNPVDVITYVVQKL-SGLPKNRVIGTGTSLDTARL  150 (306)
T ss_pred             EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEecChHHHHHHHHHHH-hCcCHHHEeeccchHHHHHH
Confidence            9999999999999999999999999999999999998 789999999999999999998 8999999 577899999999


Q ss_pred             HHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccc---hhHHHHHHHhHHHHHHhcCCc
Q 022227          165 LGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWL---NGEFITTVQQRGAAIIKARKL  241 (300)
Q Consensus       165 ~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~---~~~~~~~v~~~~~~i~~~kg~  241 (300)
                      ++++|+++++++.+|+++ ||||||++|+|+||+++|    +|+|+.+++.+..|.   .+++.++++++|++|+++||+
T Consensus       151 ~~~la~~l~v~~~~v~~~-V~G~Hg~s~~~~~S~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~kg~  225 (306)
T cd05291         151 RRALAEKLNVDPRSVHAY-VLGEHGDSQFVAWSTVTV----GGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGKGA  225 (306)
T ss_pred             HHHHHHHHCCCcccceEE-EEecCCCceeecceeeEE----cCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHccCc
Confidence            999999999999999997 599999999999999999    999999988765554   468999999999999999998


Q ss_pred             cccchHHHHHHHHHhhhhcc--------CCCccccCCCCCeEEEEeEEE--CCeeeee
Q 022227          242 SSALSAASSACDHIRDWVLG--------TPEVGSLLIFTPMIYTELVSW--LEPWTAI  289 (300)
Q Consensus       242 t~~~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~  289 (300)
                      |++ ++|.|+++++++|+.+        +...|+|| ++|+|||+||++  ++.+..+
T Consensus       226 t~~-~~a~a~~~~~~ail~~~~~v~~~s~~~~g~yg-~~~v~~s~P~~ig~~Gv~~i~  281 (306)
T cd05291         226 TYY-GIATALARIVKAILNDENAILPVSAYLDGEYG-EKDVYIGVPAIIGRNGVEEVI  281 (306)
T ss_pred             cHH-HHHHHHHHHHHHHHcCCCEEEEEEEEeccccC-CCCEEEEEEEEEeCCCEEEEE
Confidence            775 7788999999988753        44459999 579999999999  4655544

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=100.00  E-value=4.2e-55  Score=400.74  Aligned_cols=265  Identities=23%  Similarity=0.319  Sum_probs=237.4

Q ss_pred             EEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc-ccEEEeCChhhhcCCCcEEE
Q 022227            8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL-KGVVATTDAVEACTGVNIAV   86 (300)
Q Consensus         8 V~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~-~~v~~~~~~~~a~~~aDvVi   86 (300)
                      |+|+| +|.||+++++.|+..++++     +++|+|+++  ++++++++||.|+..++. .++..+++ +++++|||+||
T Consensus         1 i~iiG-aG~VG~~~a~~l~~~~~~~-----el~l~D~~~--~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVI   71 (300)
T cd00300           1 ITIIG-AGNVGAAVAFALIAKGLAS-----ELVLVDVNE--EKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVV   71 (300)
T ss_pred             CEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEeCCc--cHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEE
Confidence            58999 6999999999999988876     899999974  789999999999886532 23333344 78999999999


Q ss_pred             EeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-EeeehhhHHHHH
Q 022227           87 MVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHNRAL  165 (300)
Q Consensus        87 ~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~ld~~R~~  165 (300)
                      +++|.|++++++|.+++.+|+++++++++.|++++| ++++|++|||+|+++++++++ +++|++|+ +.+|.||+.|++
T Consensus        72 itag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p-~~~viv~sNP~d~~~~~~~~~-sg~~~~kviG~gt~lDs~r~~  149 (300)
T cd00300          72 ITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGP-DAIILVVSNPVDILTYVAQKL-SGLPKNRVIGSGTLLDSARFR  149 (300)
T ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEccChHHHHHHHHHHH-hCcCHHHEEecCCcHHHHHHH
Confidence            999999999999999999999999999999999996 789999999999999999998 78998886 556999999999


Q ss_pred             HHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcCCccccc
Q 022227          166 GQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSAL  245 (300)
Q Consensus       166 ~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~t~~~  245 (300)
                      +++|+++++++.+|++++ +||||++|+|+||+++|    +|+|+.+++++++|..++|.+++++++++|++.||+|++ 
T Consensus       150 ~~la~~l~v~~~~v~~~v-iGeHg~s~v~~~S~~~v----~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~kg~t~~-  223 (300)
T cd00300         150 SLLAEKLDVDPQSVHAYV-LGEHGDSQVVAWSTATV----GGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKGATNY-  223 (300)
T ss_pred             HHHHHHhCCCcccEEEEE-EeccCCceeeeeeeeEE----CCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHccCcchH-
Confidence            999999999999999985 79999999999999999    999999998776777889999999999999999998775 


Q ss_pred             hHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          246 SAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       246 s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      ++|.++++++++|+.+.        ...|+|| ++|++||+||++  ++.|..+.
T Consensus       224 ~~a~a~~~~~~ai~~~~~~v~~~s~~~~g~yg-~~~~~~s~Pv~ig~~Gi~~i~~  277 (300)
T cd00300         224 GIATAIADIVKSILLDERRVLPVSAVQEGQYG-IEDVALSVPAVVGREGVVRILE  277 (300)
T ss_pred             HHHHHHHHHHHHHHcCCCeEEEEEEEecCccC-CCCEEEEEEEEEeCCCeEEEec
Confidence            89999999999987543        3458999 679999999999  69998874

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=100.00  E-value=1.7e-53  Score=389.34  Aligned_cols=257  Identities=24%  Similarity=0.325  Sum_probs=216.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEe---CChhhhcCCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT---TDAVEACTGV   82 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~---~~~~~a~~~a   82 (300)
                      |||+||||+|+||+++++.|+.+++..     |++|+|++    +++|+++||+|+..+  ..+...   ++++++++||
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~-----elvLiDi~----~a~g~alDL~~~~~~--~~i~~~~~~~~~y~~~~da   69 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVS-----ELALYDIV----NTPGVAADLSHINTP--AKVTGYLGPEELKKALKGA   69 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCc-----EEEEEecC----ccceeehHhHhCCCc--ceEEEecCCCchHHhcCCC
Confidence            599999966999999999999888765     89999995    689999999998732  234432   3458999999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhH----HHHHHHHCCCCCCCcEEeeeh
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN----ALILKEFAPSIPAKNITCLTR  158 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~----~~~~~~~~~~~p~~~i~~~t~  158 (300)
                      |+||+|||.||+||++|.|++..|+++++++++.+++++| ++++|++|||+|+|    ++++++. +++|++|+.|.|.
T Consensus        70 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p-~a~vivvtNPvDv~~~i~t~~~~~~-s~~p~~rviG~~~  147 (310)
T cd01337          70 DVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACP-KALILIISNPVNSTVPIAAEVLKKA-GVYDPKRLFGVTT  147 (310)
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEccCchhhHHHHHHHHHHHh-cCCCHHHEEeeec
Confidence            9999999999999999999999999999999999999997 79999999999997    7888887 8999999877778


Q ss_pred             hhHHHHHHHHHHHcCCCCCCeEEEEEecCC-CCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHh
Q 022227          159 LDHNRALGQISEKLNVQVSDVKNVIIWGNH-SSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK  237 (300)
Q Consensus       159 ld~~R~~~~la~~l~v~~~~V~~~~V~G~h-g~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~  237 (300)
                      ||++|+++++|+++|+++++|+.++ |||| |++|||+||++.+    .    .++ .+ ++ .++|.++++++|++|++
T Consensus       148 LDs~R~~~~la~~l~v~~~~V~~~v-~GeHsGds~vp~~S~~~~----~----~~~-~~-~~-~~~i~~~v~~~g~~Ii~  215 (310)
T cd01337         148 LDVVRANTFVAELLGLDPAKVNVPV-IGGHSGVTILPLLSQCQP----P----FTF-DQ-EE-IEALTHRIQFGGDEVVK  215 (310)
T ss_pred             hHHHHHHHHHHHHhCcCHHHEEEEE-EecCCCCceecccccccc----c----ccC-CH-HH-HHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999875 9999 8999999999987    2    122 22 22 46899999999999999


Q ss_pred             cC-C-ccccchHHHHHHHHHhhhh---ccCC-------CccccCCCCCeEEEEeEEEC-Ceeeee
Q 022227          238 AR-K-LSSALSAASSACDHIRDWV---LGTP-------EVGSLLIFTPMIYTELVSWL-EPWTAI  289 (300)
Q Consensus       238 ~k-g-~t~~~s~a~ai~~~~~~~~---~~t~-------~~g~ygi~~~v~~s~Pv~~~-~~~~~~  289 (300)
                      +| | .++++++|.++++++++|+   .++.       ..|+ |+ +|+|||+||+++ +-|..|
T Consensus       216 ~k~gkg~t~~~~a~a~~~iv~aIl~~~~~~~~~~~~s~~~~~-g~-~~v~~s~P~~ig~~Gv~~i  278 (310)
T cd01337         216 AKAGAGSATLSMAYAGARFANSLLRGLKGEKGVIECAYVESD-VT-EAPFFATPVELGKNGVEKN  278 (310)
T ss_pred             CccCCCCcchhHHHHHHHHHHHHHHhcCCCcceEEEEEEecc-CC-CceEEEEEEEEeCCeEEEE
Confidence            85 2 2445699999999999998   3321       2244 64 699999999994 335554

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00117 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-52  Score=387.12  Aligned_cols=268  Identities=24%  Similarity=0.308  Sum_probs=231.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc--ccEEEeCChhhhcCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL--KGVVATTDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~--~~v~~~~~~~~a~~~   81 (300)
                      +.+||+|+| +|++|+++++.++..++ .     +++|+|+++  +++++.++|+.|+.....  .+++.+++ +++++|
T Consensus         4 ~~~KI~IIG-aG~vG~~ia~~l~~~~~-~-----~l~L~Di~~--~~~~g~~lDl~~~~~~~~~~~~i~~~~d-~~~l~~   73 (319)
T PTZ00117          4 KRKKISMIG-AGQIGSTVALLILQKNL-G-----DVVLYDVIK--GVPQGKALDLKHFSTLVGSNINILGTNN-YEDIKD   73 (319)
T ss_pred             CCcEEEEEC-CCHHHHHHHHHHHHCCC-C-----eEEEEECCC--ccchhHHHHHhhhccccCCCeEEEeCCC-HHHhCC
Confidence            457999999 69999999999988875 3     799999974  667899999999864332  34444444 569999


Q ss_pred             CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-Eeeehhh
Q 022227           82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLD  160 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~ld  160 (300)
                      ||+||+++|.+++++++|.|++..|.++++++++.|+++|| ++++|++|||+|++++.++++ +++|++++ +.+|.||
T Consensus        74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p-~a~vivvsNP~di~t~~~~~~-s~~p~~rviG~gt~ld  151 (319)
T PTZ00117         74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCP-NAFVICVTNPLDCMVKVFQEK-SGIPSNKICGMAGVLD  151 (319)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecChHHHHHHHHHHh-hCCCcccEEEecchHH
Confidence            99999999999999999999999999999999999999997 689999999999999999997 79998886 4456999


Q ss_pred             HHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccc---hhHHHHHHHhHHHHHHh
Q 022227          161 HNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWL---NGEFITTVQQRGAAIIK  237 (300)
Q Consensus       161 ~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~---~~~~~~~v~~~~~~i~~  237 (300)
                      ++|+++++|+++|+++++|+.++ +||||++|+|+||+++|    +|+|+.++++++.|.   .+++.++++++|++|++
T Consensus       152 s~R~~~~la~~l~v~~~~v~~~v-iGeHg~~~v~~~s~~~v----~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~  226 (319)
T PTZ00117        152 SSRFRCNLAEKLGVSPGDVSAVV-IGGHGDLMVPLPRYCTV----NGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVK  226 (319)
T ss_pred             HHHHHHHHHHHhCCCcccceEEE-eecCCCcEEeceeeceE----CCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999886 69999999999999999    999999987654454   36799999999999999


Q ss_pred             c--CCccccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          238 A--RKLSSALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       238 ~--kg~t~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      +  ||.+ ++++|.++++++++|+.++        +.+|+||++ |++||+||++  ++++..++
T Consensus       227 ~~~kg~t-~~~~a~a~~~~~~ail~~~~~v~~~s~~~~g~yg~~-~~~~s~P~~ig~~Gv~~i~~  289 (319)
T PTZ00117        227 LLKKGSA-FFAPAAAIVAMIEAYLKDEKRVLVCSVYLNGQYNCK-NLFVGVPVVIGGKGIEKVIE  289 (319)
T ss_pred             hcCCCCh-HHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCC-CeEEEEEEEEeCCeEEEEeC
Confidence            7  5544 4699999999999987654        345899996 9999999999  47777665

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=100.00  E-value=3.4e-52  Score=382.64  Aligned_cols=270  Identities=24%  Similarity=0.357  Sum_probs=236.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC--cccEEEeCChhhhcCCCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--LKGVVATTDAVEACTGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~--~~~v~~~~~~~~a~~~aD   83 (300)
                      |||+|+||+|.+|++++..|+..++++     +|+|+|+++..+++++.++|+.|+....  ..++..+++ ++++++||
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~-----~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aD   74 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVK-----EINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSD   74 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCC-----EEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCC
Confidence            599999977999999999999988765     8999999655578999999999875332  234555555 67899999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-EeeehhhHH
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHN  162 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~ld~~  162 (300)
                      +||+++|.|++++++|.+++..|+++++++++.|++++| ++++|+++||+|++|+++++. +++|++++ +.+|.||++
T Consensus        75 iViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~-~g~~~~~viG~gt~LDs~  152 (309)
T cd05294          75 IVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKE-SGFDKNRVFGLGTHLDSL  152 (309)
T ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHh-cCCCHHHEeeccchHHHH
Confidence            999999999999999999999999999999999999997 789999999999999999998 68999885 666899999


Q ss_pred             HHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcCCcc
Q 022227          163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS  242 (300)
Q Consensus       163 R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~t  242 (300)
                      |++++||+++++++.+|++++ +||||++|+|+||+++|    +|+|+.++++.+++..+++.++++++|++|++.||++
T Consensus       153 R~~~~la~~l~v~~~~v~~~v-iGeHg~s~~~~~S~~~i----~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~kg~t  227 (309)
T cd05294         153 RFKVAIAKHFNVHISEVHTRI-IGEHGDSMVPLISSTSI----GGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLKGGS  227 (309)
T ss_pred             HHHHHHHHHHCcChHHeEEEE-EecCCCceEeeeeecEE----CCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            999999999999999999886 79999999999999999    9999999875434556789999999999999999987


Q ss_pred             ccchHHHHHHHHHhhhhccC--------CCcccc-CCCCCeEEEEeEEE--CCeeeeee
Q 022227          243 SALSAASSACDHIRDWVLGT--------PEVGSL-LIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       243 ~~~s~a~ai~~~~~~~~~~t--------~~~g~y-gi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      + +++|.++++++++++.++        +..|+| |++ |+++|+||++  ++++..++
T Consensus       228 ~-~~~a~~~~~ii~ail~~~~~v~~vsv~~~g~~~~~~-~~~~svP~~ig~~Gv~~i~~  284 (309)
T cd05294         228 E-YGPASAISNLVRTIANDERRILTVSTYLEGEIDGIR-DVCIGVPVKLGKNGIEEIVP  284 (309)
T ss_pred             h-hhHHHHHHHHHHHHHCCCCeEEEEEEEECCccCCCC-CeEEEeEEEEcCCccEEEeC
Confidence            6 489999999999887554        345887 998 9999999999  46655554

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=2.6e-52  Score=382.13  Aligned_cols=251  Identities=25%  Similarity=0.325  Sum_probs=211.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEe-C--ChhhhcCCCc
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT-T--DAVEACTGVN   83 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~-~--~~~~a~~~aD   83 (300)
                      ||+||||+|+||+++++.|+.+++..     |++|+|+++    ++|+++||+|...  ..++..+ .  +++++++|||
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~-----elvL~Di~~----a~g~a~DL~~~~~--~~~i~~~~~~~~~~~~~~daD   69 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVS-----ELSLYDIAG----AAGVAADLSHIPT--AASVKGFSGEEGLENALKGAD   69 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCc-----EEEEecCCC----CcEEEchhhcCCc--CceEEEecCCCchHHHcCCCC
Confidence            79999977999999999999888765     899999973    6799999999762  2344432 2  3489999999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh----HHHHHHHHCCCCCCCcEEeeehh
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT----NALILKEFAPSIPAKNITCLTRL  159 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~----~~~~~~~~~~~~p~~~i~~~t~l  159 (300)
                      +||++||.+|+++++|.|++..|+++++++++.+.+++| ++++|++|||+|+    +++++++. +++|++|+.|.+.|
T Consensus        70 ivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p-~~iiivvsNPvDv~~~i~t~~~~~~-sg~p~~rViG~g~L  147 (312)
T TIGR01772        70 VVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCP-KAMILVITNPVNSTVPIAAEVLKKK-GVYDPNKLFGVTTL  147 (312)
T ss_pred             EEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCC-CeEEEEecCchhhHHHHHHHHHHHh-cCCChHHEEeeecc
Confidence            999999999999999999999999999999999999997 7899999999998    88888887 79999997666679


Q ss_pred             hHHHHHHHHHHHcCCCCCCeEEEEEecCCCC-ceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhc
Q 022227          160 DHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKA  238 (300)
Q Consensus       160 d~~R~~~~la~~l~v~~~~V~~~~V~G~hg~-~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~  238 (300)
                      |++|+++++|+++|+++++|+.++ |||||+ +|||+||++++    .  |+   +++++  .+++.++++++|++|+++
T Consensus       148 DsaR~r~~la~~l~v~~~~v~~~V-iGeHg~~s~vp~~S~~~~----~--~~---~~~~~--~~~i~~~v~~~g~~Ii~~  215 (312)
T TIGR01772       148 DIVRANTFVAELKGKDPMEVNVPV-IGGHSGETIIPLISQCPG----K--VL---FTEDQ--LEALIHRIQNAGTEVVKA  215 (312)
T ss_pred             hHHHHHHHHHHHhCCCHHHeEEEE-EEecCCCccccccccccc----c--CC---CCHHH--HHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999885 999997 99999999986    2  22   22222  468999999999999998


Q ss_pred             C-Cc-cccchHHHHHHHHHhhhh---cc-------CCCccccCCCCCeEEEEeEEEC
Q 022227          239 R-KL-SSALSAASSACDHIRDWV---LG-------TPEVGSLLIFTPMIYTELVSWL  283 (300)
Q Consensus       239 k-g~-t~~~s~a~ai~~~~~~~~---~~-------t~~~g~ygi~~~v~~s~Pv~~~  283 (300)
                      | |. ++++++|.|+++++++++   .+       ++.+|+||+ +|+|||+||+++
T Consensus       216 k~gkg~t~~~ia~a~~~iv~ail~~~~d~~~v~~~s~~~g~yg~-~~v~~s~P~~ig  271 (312)
T TIGR01772       216 KAGAGSATLSMAFAGARFVLSLVRGLKGEEGVVECAYVESDGVT-EATFFATPLLLG  271 (312)
T ss_pred             ccCCCChhHHHHHHHHHHHHHHHHhhCCCccEEEEEEEccCCCc-CceEEEEEEEEc
Confidence            4 32 344689989887777644   23       344588996 699999999994

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=9.7e-52  Score=379.80  Aligned_cols=267  Identities=21%  Similarity=0.266  Sum_probs=233.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+|+| +|.||+++++.|+..++..     +++|+|+++  +++++.++|+.|+.... ....+.++.++++++||+|
T Consensus         1 mkI~IIG-aG~VG~~~a~~l~~~g~~~-----ev~l~D~~~--~~~~g~a~dl~~~~~~~-~~~~i~~~d~~~l~~aDiV   71 (308)
T cd05292           1 MKVAIVG-AGFVGSTTAYALLLRGLAS-----EIVLVDINK--AKAEGEAMDLAHGTPFV-KPVRIYAGDYADCKGADVV   71 (308)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHcCCCC-----EEEEEECCc--hhhhhHHHHHHcccccc-CCeEEeeCCHHHhCCCCEE
Confidence            4899999 6999999999999888654     899999974  67889999999986322 2233444567899999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCc-EEeeehhhHHHH
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRA  164 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~-i~~~t~ld~~R~  164 (300)
                      |++++.+++++++|.+++..|+++++++++.+++++| +++++++|||+|+++++++++ +++|++| |+.+|.||+.|+
T Consensus        72 iita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~-~giiiv~tNP~d~~~~~~~~~-sg~p~~~viG~gt~LDs~R~  149 (308)
T cd05292          72 VITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAP-DAILLVVTNPVDVLTYVAYKL-SGLPPNRVIGSGTVLDTARF  149 (308)
T ss_pred             EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcHHHHHHHHHHH-HCcCHHHeecccchhhHHHH
Confidence            9999999999999999999999999999999999997 689999999999999999998 6999998 577899999999


Q ss_pred             HHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhccc-----ccchhHHHHHHHhHHHHHHhcC
Q 022227          165 LGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD-----AWLNGEFITTVQQRGAAIIKAR  239 (300)
Q Consensus       165 ~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~-----~~~~~~~~~~v~~~~~~i~~~k  239 (300)
                      ++++|+++++++.+|++++ |||||++|+|+||+++|    +|+|+.+++.+.     ++..+++.++++++|++|++.|
T Consensus       150 ~~~la~~~~v~~~~v~~~v-iGeHg~~~~~~~S~~~v----~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~k  224 (308)
T cd05292         150 RYLLGEHLGVDPRSVHAYI-IGEHGDSEVAVWSSANI----GGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERK  224 (308)
T ss_pred             HHHHHHHhCCCccceecee-eccCCCcEEecceeeeE----CCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999885 89999999999999999    999999987542     1235689999999999999999


Q ss_pred             CccccchHHHHHHHHHhhhhc--------cCCCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          240 KLSSALSAASSACDHIRDWVL--------GTPEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       240 g~t~~~s~a~ai~~~~~~~~~--------~t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      |.|+ +++|.++++++++++.        ++..+|+||+ +|+|||+||++  ++.+..++
T Consensus       225 g~t~-~~~a~a~~~i~~ail~~~~~v~~~s~~~~g~yg~-~~~~~s~P~~ig~~Gv~~i~~  283 (308)
T cd05292         225 GATY-YAIGLALARIVEAILRDENSVLTVSSLLDGQYGI-KDVALSLPCIVGRSGVERVLP  283 (308)
T ss_pred             CccH-HHHHHHHHHHHHHHHcCCCcEEEEEEEEcccCCC-CCEEEEEEEEEeCCceEEecC
Confidence            9777 4788899999988764        3445589998 69999999999  58887765

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=2.3e-51  Score=378.53  Aligned_cols=273  Identities=20%  Similarity=0.283  Sum_probs=232.5

Q ss_pred             CCC-CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc--ccEEEeCChhh
Q 022227            1 MAK-EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL--KGVVATTDAVE   77 (300)
Q Consensus         1 m~~-~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~--~~v~~~~~~~~   77 (300)
                      |.| +.+||+||| +|++|+++++.++..++.      +++|+|+++  +++++.++|+.|......  .++..+++ ++
T Consensus         1 ~~~~~~~KI~IIG-aG~vG~~ia~~la~~gl~------~i~LvDi~~--~~~~~~~ld~~~~~~~~~~~~~I~~~~d-~~   70 (321)
T PTZ00082          1 MTMIKRRKISLIG-SGNIGGVMAYLIVLKNLG------DVVLFDIVK--NIPQGKALDISHSNVIAGSNSKVIGTNN-YE   70 (321)
T ss_pred             CCCCCCCEEEEEC-CCHHHHHHHHHHHhCCCC------eEEEEeCCC--chhhHHHHHHHhhhhccCCCeEEEECCC-HH
Confidence            555 567999999 799999999999888763      699999975  567888999999753332  35554455 58


Q ss_pred             hcCCCcEEEEeCCCCCCCCC-----cHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCc
Q 022227           78 ACTGVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN  152 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~g~-----~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~  152 (300)
                      +++|||+||+++|.++++++     +|.+++..|+++++++++.|++++| ++++|++|||+|++++.+++. +++|++|
T Consensus        71 ~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p-~a~~iv~sNP~di~t~~~~~~-sg~p~~r  148 (321)
T PTZ00082         71 DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCP-NAFVIVITNPLDVMVKLLQEH-SGLPKNK  148 (321)
T ss_pred             HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcHHHHHHHHHHh-cCCChhh
Confidence            99999999999999999999     9999999999999999999999997 689999999999999999998 7999888


Q ss_pred             E-EeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhccccc---chhHHHHHH
Q 022227          153 I-TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW---LNGEFITTV  228 (300)
Q Consensus       153 i-~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~---~~~~~~~~v  228 (300)
                      + +.+|.||++|+++.+|+++++++++|++++ +||||++|||+||+++|    +|+|+.++++.+.+   ..+++.+++
T Consensus       149 viGlgt~lds~R~~~~la~~l~v~~~~v~~~v-iGeHg~s~v~~~S~~~i----~g~~~~~~~~~~~~~~~~~~~i~~~~  223 (321)
T PTZ00082        149 VCGMAGVLDSSRLRTYIAEKLGVNPRDVHASV-IGAHGDKMVPLPRYVTV----GGIPLSEFIKKGLITQEEIDEIVERT  223 (321)
T ss_pred             EEEecCcccHHHHHHHHHHHhCCCcccceeeE-EecCCCceEecceeeEE----CCEEHHHhhhcccCCHHHHHHHHHHH
Confidence            6 555799999999999999999999999986 79999999999999999    99999998643211   146799999


Q ss_pred             HhHHHHHHhcCC-ccccchHHHHHHHHHhhhhcc--------CCCccccCCCCCeEEEEeEEE--CCeeeeeee
Q 022227          229 QQRGAAIIKARK-LSSALSAASSACDHIRDWVLG--------TPEVGSLLIFTPMIYTELVSW--LEPWTAIVG  291 (300)
Q Consensus       229 ~~~~~~i~~~kg-~t~~~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~  291 (300)
                      +++|++|+++|| .++++++|.++++++++++.+        +...|+||+ +|+|+|+||++  ++++.+++-
T Consensus       224 ~~~g~~i~~~~gkg~t~~~ia~a~~~i~~ail~d~~~v~~vs~~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~~  296 (321)
T PTZ00082        224 RNTGKEIVDLLGTGSAYFAPAAAAIEMAEAYLKDKKRVLPCSAYLEGQYGH-KDIYMGTPAVIGANGVEKIIEL  296 (321)
T ss_pred             HHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHcCCCcEEEEEEEecccCCC-CCeEEEEEEEEeCCeEEEEeCC
Confidence            999999999753 244469999999999998754        344599999 69999999999  588777653

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=6.1e-51  Score=373.58  Aligned_cols=265  Identities=23%  Similarity=0.296  Sum_probs=227.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC--cccEEEeCChhhhcCCCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--LKGVVATTDAVEACTGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~--~~~v~~~~~~~~a~~~aD   83 (300)
                      +||+|+| +|.||+.+++.++..++.      +++|+|+.+  +..++.++|+.+.....  ..+++.+++. +++++||
T Consensus         2 ~KV~VIG-aG~vG~~iA~~la~~g~~------~VvlvDi~~--~l~~g~a~d~~~~~~~~~~~~~i~~t~d~-~~~~~aD   71 (305)
T TIGR01763         2 KKISVIG-AGFVGATTAFRLAEKELA------DLVLLDVVE--GIPQGKALDMYEASPVGGFDTKVTGTNNY-ADTANSD   71 (305)
T ss_pred             CEEEEEC-cCHHHHHHHHHHHHcCCC------eEEEEeCCC--ChhHHHHHhhhhhhhccCCCcEEEecCCH-HHhCCCC
Confidence            6999999 699999999999987652      699999964  56677888888765322  2456555664 6699999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-EeeehhhHH
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHN  162 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~ld~~  162 (300)
                      +||+++|.|++++++|.|++..|++++++++++|.+++| ++++|++|||+|+++++++++ +++|++|+ +.+|.||++
T Consensus        72 iVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-~~~iIv~tNP~di~t~~~~~~-sg~~~~rviG~g~~lds~  149 (305)
T TIGR01763        72 IVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-NPIIVVVSNPLDAMTYVAWQK-SGFPKERVIGQAGVLDSA  149 (305)
T ss_pred             EEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcHHHHHHHHHHH-HCcCHHHEEEeccchHHH
Confidence            999999999999999999999999999999999999986 789999999999999999998 79999886 556799999


Q ss_pred             HHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcCCc-
Q 022227          163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKL-  241 (300)
Q Consensus       163 R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~-  241 (300)
                      |+++.+|+++++++.+|++++ |||||++|+|+||+++|    +|+|+.+++.++.  .+++.++++++|++|+++||. 
T Consensus       150 R~~~~la~~l~v~~~~v~~~v-~GeHg~s~~~~wS~~~i----~g~~~~~~~~~~~--~~~l~~~v~~~g~~ii~~~~kg  222 (305)
T TIGR01763       150 RFRTFIAMELGVSVQDVTACV-LGGHGDAMVPLVRYSTV----AGIPVADLISAER--IAEIVERTRKGGGEIVNLLKQG  222 (305)
T ss_pred             HHHHHHHHHhCcCHHHeeeeE-EecCCCcEEeeeeeeEE----CCEEHHHhcCHHH--HHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999995 89999999999999999    9999999876543  468999999999999998442 


Q ss_pred             cccchHHHHHHHHHhhhh--------ccCCCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          242 SSALSAASSACDHIRDWV--------LGTPEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       242 t~~~s~a~ai~~~~~~~~--------~~t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      ++++++|.++++++++++        .+++.+|+||+ +|+|+|+||++  +++...++
T Consensus       223 ~t~~~~a~~~~~i~~ai~~~~~~v~~~s~~~~~~yg~-~~v~~s~P~~ig~~Gv~~i~~  280 (305)
T TIGR01763       223 SAYYAPAASVVEMVEAILKDRKRVLPCAAYLDGQYGI-DGIYVGVPVILGKNGVEHIYE  280 (305)
T ss_pred             ChHHHHHHHHHHHHHHHhCCCCeEEEEEEEecccCCC-CceEEEEEEEEeCCeEEEEeC
Confidence            334688888888887765        34555699998 69999999999  57766665

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PLN00106 malate dehydrogenase

Probab=100.00  E-value=1.6e-49  Score=365.04  Aligned_cols=263  Identities=25%  Similarity=0.345  Sum_probs=220.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-cccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-~~~v~~~~~~~~a~~~a   82 (300)
                      ++.||+||||+|+||+++++.|+.+++++     +++|+|+++    ++++++||.|+..+. ...+...++.+++++||
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~-----el~L~Di~~----~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~a   87 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVS-----ELHLYDIAN----TPGVAADVSHINTPAQVRGFLGDDQLGDALKGA   87 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCC-----EEEEEecCC----CCeeEchhhhCCcCceEEEEeCCCCHHHHcCCC
Confidence            35799999977999999999999888876     899999963    788999999988542 12222345668999999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh----hHHHHHHHHCCCCCCCcEEeeeh
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN----TNALILKEFAPSIPAKNITCLTR  158 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~----~~~~~~~~~~~~~p~~~i~~~t~  158 (300)
                      |+||++||.+++++++|.|++..|+++++++++.+++++| +++++++|||+|    ++++.+++. +++|+++++|.+.
T Consensus        88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p-~aivivvSNPvD~~~~i~t~~~~~~-s~~p~~~viG~~~  165 (323)
T PLN00106         88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCP-NALVNIISNPVNSTVPIAAEVLKKA-GVYDPKKLFGVTT  165 (323)
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCCccccHHHHHHHHHHc-CCCCcceEEEEec
Confidence            9999999999999999999999999999999999999997 789999999999    899988887 7999999878788


Q ss_pred             hhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC-ceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHh
Q 022227          159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK  237 (300)
Q Consensus       159 ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~-~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~  237 (300)
                      ||++|+++++|+++|+++.+|++++ +||||+ +|||+||++++    ..    + +.+++  .+++.++++++|++|++
T Consensus       166 LDs~Rl~~~lA~~lgv~~~~V~~~V-iGeHg~~s~vp~~S~~~~----~~----~-~~~~~--~~~i~~~v~~~g~~Ii~  233 (323)
T PLN00106        166 LDVVRANTFVAEKKGLDPADVDVPV-VGGHAGITILPLLSQATP----KV----S-FTDEE--IEALTKRIQNGGTEVVE  233 (323)
T ss_pred             chHHHHHHHHHHHhCCChhheEEEE-EEeCCCccEeeehhccee----cc----c-CCHHH--HHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999986 799965 99999999987    21    2 22222  46899999999999999


Q ss_pred             cC-C-ccccchHHHHHHHHHhhhhccCC----------CccccCCCCCeEEEEeEEE--CCeeeeeee
Q 022227          238 AR-K-LSSALSAASSACDHIRDWVLGTP----------EVGSLLIFTPMIYTELVSW--LEPWTAIVG  291 (300)
Q Consensus       238 ~k-g-~t~~~s~a~ai~~~~~~~~~~t~----------~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~  291 (300)
                      +| | .++++++|.++++++++|+.++.          ..|+|  ++++|||+||++  ++...++.-
T Consensus       234 ~k~~kg~t~~~~a~a~~~ii~ail~~~~~~~~v~~~s~~~~~~--~~~v~~s~P~~ig~~Gv~~i~~~  299 (323)
T PLN00106        234 AKAGAGSATLSMAYAAARFADACLRGLNGEADVVECSYVQSEV--TELPFFASKVRLGRNGVEEVLGL  299 (323)
T ss_pred             CccCCCCchHHHHHHHHHHHHHHHhccCCCceEEEEEEECccc--CCceEEEEEEEEcCCeeEEEcCC
Confidence            85 3 34556999999999999887422          12433  334999999999  577777654

>PTZ00325 malate dehydrogenase; Provisional

Probab=100.00  E-value=7.8e-49  Score=360.16  Aligned_cols=259  Identities=24%  Similarity=0.295  Sum_probs=217.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCC---hhhhcC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD---AVEACT   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~---~~~a~~   80 (300)
                      ++.||+||||+|+||+++++.|+..++..     +++|+|++    +++++++||.|+..  ...+...++   .+++++
T Consensus         7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~-----elvL~Di~----~~~g~a~Dl~~~~~--~~~v~~~td~~~~~~~l~   75 (321)
T PTZ00325          7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVS-----ELSLYDIV----GAPGVAADLSHIDT--PAKVTGYADGELWEKALR   75 (321)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHhcCCCCC-----EEEEEecC----CCcccccchhhcCc--CceEEEecCCCchHHHhC
Confidence            46799999977999999999998777654     89999993    57889999999764  123332322   279999


Q ss_pred             CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHH----HHCCCCCCCcEEee
Q 022227           81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK----EFAPSIPAKNITCL  156 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~----~~~~~~p~~~i~~~  156 (300)
                      |||+||+++|.+++++++|.+++..|++++++++++++++++ +.+++++|||+|.++++++    +. +++|+++++|.
T Consensus        76 gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~-~~iviv~SNPvdv~~~~~~~~~~~~-sg~p~~~viG~  153 (321)
T PTZ00325         76 GADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAP-KAIVGIVSNPVNSTVPIAAETLKKA-GVYDPRKLFGV  153 (321)
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcHHHHHHHHHhhhhhc-cCCChhheeec
Confidence            999999999999999999999999999999999999999997 6789999999999999986    54 78999997666


Q ss_pred             ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC-ceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHH
Q 022227          157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAI  235 (300)
Q Consensus       157 t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~-~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i  235 (300)
                      +.||++||++++|+++|++|++|++++ |||||+ +|||+||++       |+|+.    +++  .+++.++++++|++|
T Consensus       154 g~LDs~R~r~~la~~l~v~~~~V~~~V-lGeHGd~s~v~~~S~~-------g~~l~----~~~--~~~i~~~v~~~g~~I  219 (321)
T PTZ00325        154 TTLDVVRARKFVAEALGMNPYDVNVPV-VGGHSGVTIVPLLSQT-------GLSLP----EEQ--VEQITHRVQVGGDEV  219 (321)
T ss_pred             hhHHHHHHHHHHHHHhCcChhheEEEE-EeecCCcccccchhcc-------CCCCC----HHH--HHHHHHHHHHHHHHH
Confidence            679999999999999999999999885 899999 899999998       44552    222  468999999999999


Q ss_pred             HhcCC--ccccchHHHHHHHHHhhhhcc---C-------CCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          236 IKARK--LSSALSAASSACDHIRDWVLG---T-------PEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       236 ~~~kg--~t~~~s~a~ai~~~~~~~~~~---t-------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      +++||  .++++++|.++++++++|+..   .       ...|+||+ +|+|||+||++  ++.-..+.
T Consensus       220 i~~k~~kg~t~~g~a~a~~~i~~ail~~~~~~~~v~~~~~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~  287 (321)
T PTZ00325        220 VKAKEGAGSATLSMAYAAAEWSTSVLKALRGDKGIVECAFVESDMRP-ECPFFSSPVELGKEGVERVLP  287 (321)
T ss_pred             HhcccCCCCchHHHHHHHHHHHHHHHhhcCCCCCeEEEEEEecCCCC-CCeEEEEEEEEcCCeeEEEcC
Confidence            99873  355569999999999998743   2       23489996 69999999999  46655554

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=100.00  E-value=1.2e-48  Score=358.38  Aligned_cols=262  Identities=26%  Similarity=0.354  Sum_probs=225.0

Q ss_pred             EEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc--ccEEEeCChhhhcCCCcEE
Q 022227            8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL--KGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         8 V~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~--~~v~~~~~~~~a~~~aDvV   85 (300)
                      |+|+| +|.||+.+++.|+..++.      +++|+|+++  +++++.++|+.+......  .+++.+++ +++++|||+|
T Consensus         1 I~IIG-aG~vG~~ia~~la~~~l~------eV~L~Di~e--~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiV   70 (300)
T cd01339           1 ISIIG-AGNVGATLAQLLALKELG------DVVLLDIVE--GLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVV   70 (300)
T ss_pred             CEEEC-CCHHHHHHHHHHHhCCCc------EEEEEeCCC--cHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEE
Confidence            68999 699999999999877642      799999974  577888899988653332  35555555 6889999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-EeeehhhHHHH
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHNRA  164 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~ld~~R~  164 (300)
                      |+++|.|++++++|.+++..|+++++++++.|++++| ++++|++|||+|+++++++++ +++|++|+ +.+|.||++|+
T Consensus        71 Iit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p-~~~iIv~sNP~di~t~~~~~~-s~~~~~rviGlgt~lds~r~  148 (300)
T cd01339          71 VITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAP-NAIVIVVTNPLDVMTYVAYKA-SGFPRNRVIGMAGVLDSARF  148 (300)
T ss_pred             EEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcHHHHHHHHHHH-hCCCHHHEEEecchHHHHHH
Confidence            9999999999999999999999999999999999997 578999999999999999998 79998886 55569999999


Q ss_pred             HHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcC--Ccc
Q 022227          165 LGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKAR--KLS  242 (300)
Q Consensus       165 ~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~k--g~t  242 (300)
                      ++++|+++++++.+|++++ +|+||++++|+||+++|    +|.|+.+++.+++  .+++.+++++++++|++.|  |+|
T Consensus       149 ~~~la~~l~v~~~~v~~~v-~G~hg~~~~~~~s~~~v----~g~~~~~~~~~~~--~~~~~~~v~~~~~~ii~~k~~g~t  221 (300)
T cd01339         149 RYFIAEELGVSVKDVQAMV-LGGHGDTMVPLPRYSTV----GGIPLTELITKEE--IDEIVERTRNGGAEIVNLLKTGSA  221 (300)
T ss_pred             HHHHHHHhCCCccceEEEE-EeCCCCcceecceecEE----CCEEHHHhcChHH--HHHHHHHHHHHHHHHHhhcCCCch
Confidence            9999999999999999986 69999999999999999    9999999876654  4789999999999999987  544


Q ss_pred             ccchHHHHHHHHHhhhhcc--------CCCccccCCCCCeEEEEeEEEC-Ceeeeee
Q 022227          243 SALSAASSACDHIRDWVLG--------TPEVGSLLIFTPMIYTELVSWL-EPWTAIV  290 (300)
Q Consensus       243 ~~~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~v~~s~Pv~~~-~~~~~~~  290 (300)
                      + +++|.++++++++++.+        +...|+||++ |++||+||+++ +-|..+.
T Consensus       222 ~-~~~a~~~~~i~~ail~~~~~i~~~s~~~~g~yg~~-~~~~s~P~~ig~~G~~~~~  276 (300)
T cd01339         222 Y-YAPAAAIAEMVEAILKDKKRVLPCSAYLEGEYGIK-DIFVGVPVVLGKNGVEKII  276 (300)
T ss_pred             h-HHHHHHHHHHHHHHHcCCCcEEEEEEEeccccCCC-CeEEEEEEEEeCCeEEEEe
Confidence            4 58888999998877643        3445999997 99999999994 5555444

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK06223 malate dehydrogenase; Reviewed

Probab=100.00  E-value=2e-48  Score=358.19  Aligned_cols=264  Identities=25%  Similarity=0.353  Sum_probs=226.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc--ccEEEeCChhhhcCCCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL--KGVVATTDAVEACTGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~--~~v~~~~~~~~a~~~aD   83 (300)
                      +||+|+| +|++|+++++.++..++.      +++|+|+++  +++++..+|+.+...+..  .+++.+++ +++++|||
T Consensus         3 ~KI~VIG-aG~vG~~ia~~la~~~~~------ev~L~D~~~--~~~~~~~~dl~~~~~~~~~~~~i~~~~d-~~~~~~aD   72 (307)
T PRK06223          3 KKISIIG-AGNVGATLAHLLALKELG------DVVLFDIVE--GVPQGKALDIAEAAPVEGFDTKITGTND-YEDIAGSD   72 (307)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCe------EEEEEECCC--chhHHHHHHHHhhhhhcCCCcEEEeCCC-HHHHCCCC
Confidence            7999999 599999999999877641      799999964  678889999988764432  34444445 57899999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-EeeehhhHH
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHN  162 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~ld~~  162 (300)
                      +||+++|.|++++++|.+++.+|+++++++++.+++++| ++++|++|||+|++|++++++ +++|++|+ +.+|.||++
T Consensus        73 iVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~-~~~viv~tNP~d~~~~~~~~~-s~~~~~~viG~gt~lds~  150 (307)
T PRK06223         73 VVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAP-DAIVIVVTNPVDAMTYVALKE-SGFPKNRVIGMAGVLDSA  150 (307)
T ss_pred             EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcHHHHHHHHHHH-hCCCcccEEEeCCCcHHH
Confidence            999999999999999999999999999999999999997 679999999999999999998 79999996 555799999


Q ss_pred             HHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhc--CC
Q 022227          163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKA--RK  240 (300)
Q Consensus       163 R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~--kg  240 (300)
                      |+++.||+++++++.+|++++ +||||++++|+||+++|    +|.|+.++++ ++| .+++.+++++++++|++.  |+
T Consensus       151 r~~~~la~~l~v~~~~v~~~v-iGehg~s~~p~~S~~~v----~g~~~~~~~~-~~~-~~~l~~~v~~~~~~ii~~~~kg  223 (307)
T PRK06223        151 RFRTFIAEELNVSVKDVTAFV-LGGHGDSMVPLVRYSTV----GGIPLEDLLS-KEK-LDEIVERTRKGGAEIVGLLKTG  223 (307)
T ss_pred             HHHHHHHHHhCcChhhCcccE-EcCCCCcceEchhhCEE----CCEEHHHhCC-hHH-HHHHHHHHHHHHHHHHhhcccC
Confidence            999999999999999999986 79999999999999999    9999999864 345 478999999999999997  55


Q ss_pred             ccccchHHHHHHHHHhhhhcc--------CCCccccCCCCCeEEEEeEEEC-Ceeeeee
Q 022227          241 LSSALSAASSACDHIRDWVLG--------TPEVGSLLIFTPMIYTELVSWL-EPWTAIV  290 (300)
Q Consensus       241 ~t~~~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~v~~s~Pv~~~-~~~~~~~  290 (300)
                       ++++++|.++++.+++++.+        +...|+||+ +|++||+||+++ +-|..+.
T Consensus       224 -~t~~~~A~~~~~ii~ail~~~~~~~~~~v~~~g~yg~-~~~~~s~P~~i~~~Gv~~i~  280 (307)
T PRK06223        224 -SAYYAPAASIAEMVEAILKDKKRVLPCSAYLEGEYGV-KDVYVGVPVKLGKNGVEKII  280 (307)
T ss_pred             -ChhHHHHHHHHHHHHHHHcCCCcEEEEEEEecCcCCC-CCeEEEeEEEEeCCeEEEEe
Confidence             44568888999999887654        344589999 899999999993 5555553

>PRK05086 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-47  Score=352.79  Aligned_cols=259  Identities=22%  Similarity=0.268  Sum_probs=215.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHh-cccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEE--eCChhhhcCCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA--TTDAVEACTGV   82 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~-~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~--~~~~~~a~~~a   82 (300)
                      |||+|+||+|.||+++++.|.. .+...     +++|+|+++   ..+++++|+.|..  ....+..  .++.+++++|+
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~-----el~L~d~~~---~~~g~alDl~~~~--~~~~i~~~~~~d~~~~l~~~   70 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGS-----ELSLYDIAP---VTPGVAVDLSHIP--TAVKIKGFSGEDPTPALEGA   70 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCcc-----EEEEEecCC---CCcceehhhhcCC--CCceEEEeCCCCHHHHcCCC
Confidence            5999999889999999998865 33322     899999863   3567889998742  1123332  34668999999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHH----HHCCCCCCCcEEeeeh
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK----EFAPSIPAKNITCLTR  158 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~----~~~~~~p~~~i~~~t~  158 (300)
                      |+||+++|.+++++++|.+++..|++++++++++|++++| +++++++|||+|+||++++    ++ +++|++++.+.|.
T Consensus        71 DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~-~~ivivvsNP~D~~t~~~~~~~~~~-sg~p~~rvig~~~  148 (312)
T PRK05086         71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCP-KACIGIITNPVNTTVAIAAEVLKKA-GVYDKNKLFGVTT  148 (312)
T ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEccCchHHHHHHHHHHHHHh-cCCCHHHEEeeec
Confidence            9999999999999999999999999999999999999997 6899999999999999988    66 7899999877778


Q ss_pred             hhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC-ceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHh
Q 022227          159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK  237 (300)
Q Consensus       159 ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~-~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~  237 (300)
                      ||++|+++.+|+++|+++++|+.++ |||||+ +|||+||++      +|.|+.+    ++  .+++.++++++|++|++
T Consensus       149 Lds~R~~~~ia~~l~~~~~~v~~~v-~GeHg~~s~~p~~S~~------~g~~l~~----~~--~~~i~~~v~~~g~~ii~  215 (312)
T PRK05086        149 LDVIRSETFVAELKGKQPGEVEVPV-IGGHSGVTILPLLSQV------PGVSFTE----QE--VADLTKRIQNAGTEVVE  215 (312)
T ss_pred             HHHHHHHHHHHHHhCCChhheEEEE-EEecCCCceecccccc------CCccCCH----HH--HHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999875 999977 999999999      4777732    22  46899999999999999


Q ss_pred             cC--CccccchHHHHHHHHHhhhhccC----------CCccccCCCCCeEEEEeEEE--CCeeeeeee
Q 022227          238 AR--KLSSALSAASSACDHIRDWVLGT----------PEVGSLLIFTPMIYTELVSW--LEPWTAIVG  291 (300)
Q Consensus       238 ~k--g~t~~~s~a~ai~~~~~~~~~~t----------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~  291 (300)
                      +|  +.++++++|.++++++++++.++          ...|+ |+ +|+|||+||++  ++.+..+.-
T Consensus       216 ~k~~~g~t~~~~a~a~~~~v~ai~~~~~~~~~v~~~~~~~~~-g~-~~v~~s~P~~ig~~Gv~~i~~~  281 (312)
T PRK05086        216 AKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGD-GK-YARFFAQPVLLGKNGVEERLPI  281 (312)
T ss_pred             cccCCCCchhhHHHHHHHHHHHHHhcCCCCCcEEEEEEEecc-CC-cceEEEEEEEEcCCeeEEEcCC
Confidence            88  23555699999999999988442          12254 74 68999999999  578887664

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=100.00  E-value=1.1e-44  Score=326.51  Aligned_cols=230  Identities=31%  Similarity=0.418  Sum_probs=200.4

Q ss_pred             EEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-cccEEEeCChhhhcCCCcEEE
Q 022227            8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGVNIAV   86 (300)
Q Consensus         8 V~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-~~~v~~~~~~~~a~~~aDvVi   86 (300)
                      |+|+||+|.+|+++++.|+..+..   ...+|+|+|+++  +++++.++|++|...+. ..+++.++|.+++++|||+||
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~---~~~el~L~D~~~--~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv   75 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVL---LAIELVLYDIDE--EKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVI   75 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCC---cceEEEEEeCCc--ccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEE
Confidence            689996699999999999988721   113899999974  78999999999987655 457777778899999999999


Q ss_pred             EeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHH
Q 022227           87 MVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG  166 (300)
Q Consensus        87 ~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~  166 (300)
                      +++|.++++|++|.+++.+|+++++++++.++++|| ++++|++|||+|.+|++++++ +++|++|+.|.|.+|+.|+++
T Consensus        76 ~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~~i~~tNP~d~~t~~~~~~-sg~~~~kviG~~~ld~~r~~~  153 (263)
T cd00650          76 ITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSP-DAWIIVVSNPVDIITYLVWRY-SGLPKEKVIGLGTLDPIRFRR  153 (263)
T ss_pred             ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcHHHHHHHHHHH-hCCCchhEEEeecchHHHHHH
Confidence            999999999999999999999999999999999996 799999999999999999998 699999975654499999999


Q ss_pred             HHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcCCccccch
Q 022227          167 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSALS  246 (300)
Q Consensus       167 ~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~t~~~s  246 (300)
                      ++|+++++++++|+.+ |||+||++++|+||+++                                              
T Consensus       154 ~la~~l~v~~~~v~~~-v~G~hg~~~~~~~s~~~----------------------------------------------  186 (263)
T cd00650         154 ILAEKLGVDPDDVKVY-ILGEHGGSQVPDWSTVR----------------------------------------------  186 (263)
T ss_pred             HHHHHhCCCccceEEE-EEEcCCCceEeccccch----------------------------------------------
Confidence            9999999999999966 59999999999999866                                              


Q ss_pred             HHHHHHHHHhhhhc--------cCCCccccCCCCCeEEEEeEEE--CCeeeeeee
Q 022227          247 AASSACDHIRDWVL--------GTPEVGSLLIFTPMIYTELVSW--LEPWTAIVG  291 (300)
Q Consensus       247 ~a~ai~~~~~~~~~--------~t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~  291 (300)
                      +|.++++++++|+.        +++.+|+||+|+|++||+||++  ++.|++++-
T Consensus       187 ~a~~~~~ii~ai~~~~~~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~  241 (263)
T cd00650         187 IATSIADLIRSLLNDEGEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEV  241 (263)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecC
Confidence            66677777777664        3455699999999999999999  477788874

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=7.2e-38  Score=273.08  Aligned_cols=260  Identities=26%  Similarity=0.358  Sum_probs=209.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-cccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-~~~v~~~~~~~~a~~~a   82 (300)
                      +..||+|.||+|-||+.+...|....+.+     ++.|||+.    ...|.+.||+|..... ...+....+++.++++|
T Consensus        27 ~~~KVAvlGAaGGIGQPLSLLlK~np~Vs-----~LaLYDi~----~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~a   97 (345)
T KOG1494|consen   27 RGLKVAVLGAAGGIGQPLSLLLKLNPLVS-----ELALYDIA----NTPGVAADLSHINTNSSVVGFTGADGLENALKGA   97 (345)
T ss_pred             CcceEEEEecCCccCccHHHHHhcCcccc-----eeeeeecc----cCCcccccccccCCCCceeccCChhHHHHHhcCC
Confidence            45799999999999999998888776655     89999996    3678999999987542 34444556789999999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHC---CCCCCCcEEeeehh
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFA---PSIPAKNITCLTRL  159 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~---~~~p~~~i~~~t~l  159 (300)
                      |+||+.||+||||||+|.||+..|+.|+++++.++.++|| ++.+.++|||+|...+++.+..   .-++++++.|.|.|
T Consensus        98 dvVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP-~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTtL  176 (345)
T KOG1494|consen   98 DVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCP-NALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTL  176 (345)
T ss_pred             CEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCc-cceeEeecCcccccchHHHHHHHHcCCCCccceeceehh
Confidence            9999999999999999999999999999999999999997 6899999999997666655532   34677888899999


Q ss_pred             hHHHHHHHHHHHcCCCCCC-eEEEEEecCCCC-ceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHh
Q 022227          160 DHNRALGQISEKLNVQVSD-VKNVIIWGNHSS-SQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK  237 (300)
Q Consensus       160 d~~R~~~~la~~l~v~~~~-V~~~~V~G~hg~-~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~  237 (300)
                      |..|++.++++.++++|.+ ++ ++|+|.|.. |..|++|++...        .. +++++  .+.|+.++|+.|.||++
T Consensus       177 DvVRA~tFv~~~~~~~p~~~v~-VPVIGGHaG~TIlPLlSQ~~p~--------~~-~~~~~--~~~Lt~RiQ~gGtEVV~  244 (345)
T KOG1494|consen  177 DVVRANTFVAEVLNLDPAEDVD-VPVIGGHAGITIIPLLSQCKPP--------FR-FTDDE--IEALTHRIQNGGTEVVK  244 (345)
T ss_pred             hhhhHHHHHHHHhCCCchhcCC-cceecCcCCceEeeecccCCCc--------cc-CCHHH--HHHHHHHHHhCCceEEE
Confidence            9999999999999999944 76 667899986 999999999871        01 22222  46899999999999999


Q ss_pred             cCCc--cccchHHHHHHHHHhhhhc---cCCCc-------c-ccCCCCCeEEEEeEEE--CCeeee
Q 022227          238 ARKL--SSALSAASSACDHIRDWVL---GTPEV-------G-SLLIFTPMIYTELVSW--LEPWTA  288 (300)
Q Consensus       238 ~kg~--t~~~s~a~ai~~~~~~~~~---~t~~~-------g-~ygi~~~v~~s~Pv~~--~~~~~~  288 (300)
                      .|..  |..+|+|+|-++...+++.   |....       . .+++|   ||+.|+.+  +++=..
T Consensus       245 AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~~---fFaspv~Lg~~Gv~~v  307 (345)
T KOG1494|consen  245 AKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASPVTELP---FFATPVTLGKKGVEEV  307 (345)
T ss_pred             eccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEeccccCcc---ceeceEEecCCceeee
Confidence            9864  5567999998888776553   32111       1 14555   99999999  454443

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=2.8e-32  Score=223.24  Aligned_cols=141  Identities=28%  Similarity=0.494  Sum_probs=128.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+|+||+|.||+++++.|+++++.+     ||+|+|++  +++++|+++||+|+..+...+..++.+.+++++|||+|
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~-----ei~L~D~~--~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDiv   73 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLAD-----EIVLIDIN--EDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIV   73 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSS-----EEEEEESS--HHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCC-----ceEEeccC--cccceeeehhhhhhhhhcccccccccccccccccccEE
Confidence            599999977999999999999998866     89999997  46899999999999877656667777889999999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEe
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC  155 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~  155 (300)
                      |++||.++++|++|.+++..|+++++++++.+++++| +++++++|||+|++|++++++ +++|++++.|
T Consensus        74 vitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p-~~~vivvtNPvd~~t~~~~~~-s~~~~~kviG  141 (141)
T PF00056_consen   74 VITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAP-DAIVIVVTNPVDVMTYVAQKY-SGFPPNKVIG  141 (141)
T ss_dssp             EETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHST-TSEEEE-SSSHHHHHHHHHHH-HTSSGGGEEE
T ss_pred             EEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCC-ccEEEEeCCcHHHHHHHHHHh-hCcCcccCcC
Confidence            9999999999999999999999999999999999997 789999999999999999998 7999888643

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=99.95  E-value=6.2e-28  Score=204.51  Aligned_cols=129  Identities=28%  Similarity=0.250  Sum_probs=113.8

Q ss_pred             ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcc----cccchhHHHHHHHhHH
Q 022227          157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD----DAWLNGEFITTVQQRG  232 (300)
Q Consensus       157 t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~----~~~~~~~~~~~v~~~~  232 (300)
                      |.||++|+++++|+++|++|.+++.++ |||||++|||+||++++    +|+|+.++.+.    .+|..+++.++++++|
T Consensus         1 T~LDs~R~~~~la~~l~v~~~~v~~~V-iGeHg~s~~~~~S~~~v----~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g   75 (174)
T PF02866_consen    1 TMLDSARFRYFLAEKLGVNPSSVNAYV-IGEHGDSQVPDWSHAKV----GGVPLLSYAKPSGKLSEEELEELTERVRKAG   75 (174)
T ss_dssp             THHHHHHHHHHHHHHHTSGGGGEEEEE-EBSSSTTEEEEGGGEEE----TTEEHHHHHHTTTSSSHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCccceEEEE-EecCCcceeeeeecccc----cccccccccccccchhHHhhhccccccEecc
Confidence            689999999999999999999999875 99999999999999999    99999877543    2455689999999999


Q ss_pred             HHHHhcCCccccchHHHHHHHHHhhhhcc--------CCCccccCCCCC-eEEEEeEEE--CCeeeeee
Q 022227          233 AAIIKARKLSSALSAASSACDHIRDWVLG--------TPEVGSLLIFTP-MIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       233 ~~i~~~kg~t~~~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~-v~~s~Pv~~--~~~~~~~~  290 (300)
                      ++|+++|+.++++|+|.|+++++++|+.+        +...|+||++.+ +|||+||++  ++.|..+.
T Consensus        76 ~~ii~~k~g~t~~s~A~a~~~~v~ail~~~~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~  144 (174)
T PF02866_consen   76 YEIIKAKGGSTSYSIAAAAARIVEAILKDERRILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVE  144 (174)
T ss_dssp             HHHHHHHSSSCHHHHHHHHHHHHHHHHTTHTEEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEEC
T ss_pred             ceeeeeccccCcCCHHHHHHHHHHHHhhcccccccceeccccccCcccccceecceEEEcCCeeEEEeC
Confidence            99999996566679999999999998754        344599999977 999999999  68898876

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=99.92  E-value=3.4e-24  Score=204.24  Aligned_cols=187  Identities=17%  Similarity=0.176  Sum_probs=137.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCC-CCC-eEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEeCChhhhcC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGT-DQP-VILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAVEACT   80 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~-~~~-~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~~~~~a~~   80 (300)
                      +||+|||| |+.   ..+.|+..-+..+ +.+ .+|+|+|+++  ++++- ...+.....   ....+++.|+|.++|++
T Consensus         1 ~KI~iIGg-GS~---~tp~li~~l~~~~~~l~~~ei~L~Did~--~Rl~~-v~~l~~~~~~~~g~~~~v~~ttD~~~Al~   73 (425)
T cd05197           1 VKIAIIGG-GSS---FTPELVSGLLKTPEELPISEVTLYDIDE--ERLDI-ILTIAKRYVEEVGADIKFEKTMDLEDAII   73 (425)
T ss_pred             CEEEEECC-chH---hHHHHHHHHHcChhhCCCCEEEEEcCCH--HHHHH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhC
Confidence            59999995 543   4444443211111 122 3899999974  55542 222222111   12347888999999999


Q ss_pred             CCcEEEEeCCC---C---------CCCCC---c-----HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH
Q 022227           81 GVNIAVMVGGF---P---------RKEGM---E-----RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        81 ~aDvVi~~ag~---~---------~~~g~---~-----r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                      ||||||.+.-+   .         .+.|.   +     -.-...+|+++++++++.|+++|| ++|+|++|||+|++|++
T Consensus        74 gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P-~a~lin~TNP~di~t~a  152 (425)
T cd05197          74 DADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSP-DAWYLNFTNPAGEVTEA  152 (425)
T ss_pred             CCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCC-CcEEEecCChHHHHHHH
Confidence            99999997532   1         12211   1     122356899999999999999997 79999999999999999


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEec-CCCCceeeeccceeeeccCCCcchhhh
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG-NHSSSQYPDVNHATVNTAAGEKPVREL  213 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G-~hg~~~~p~~s~a~v~~~~~g~p~~~~  213 (300)
                      +++. +  |+.++.|.|.. +.|+++.+|+.+|+++++|+.++ +| |||    ++||++++    +|+|+..-
T Consensus       153 ~~~~-~--p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v-~GlnHg----~~~s~~~~----~G~~l~p~  213 (425)
T cd05197         153 VRRY-V--PPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQY-AGLNHG----IWLNRVRY----NGGDVTPK  213 (425)
T ss_pred             HHHh-C--CCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEE-EeccCe----EeeEeEEE----CCeecHHH
Confidence            9987 2  66788787776 99999999999999999999886 89 999    99999999    88887643

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK15076 alpha-galactosidase; Provisional

Probab=99.89  E-value=4.6e-22  Score=190.23  Aligned_cols=176  Identities=16%  Similarity=0.162  Sum_probs=135.5

Q ss_pred             cEEEEEcCCChHHHHHHH--HHH-hcccCCCCCCeEEEEEecCCchhhhh-hhhhhhhhhccC--CcccEEEeCChhhhc
Q 022227            6 VRVLVTGAAGQIGYALVP--MIA-RGVMLGTDQPVILHMLDIPPAAEALN-GVKMELVDAAFP--LLKGVVATTDAVEAC   79 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~--~L~-~~~~~~~~~~~~l~L~D~~~~~~~l~-g~~~dl~~~~~~--~~~~v~~~~~~~~a~   79 (300)
                      +||+|+| +|++|++.+.  .++ ..++.+    .+|+|+|+++  ++++ +..+ +.+....  ...+++.++|.++|+
T Consensus         2 ~KIaIIG-aGsvg~~~~~~~~i~~~~~l~~----~evvLvDid~--er~~~~~~l-~~~~~~~~~~~~~i~~ttD~~eal   73 (431)
T PRK15076          2 PKITFIG-AGSTVFTKNLLGDILSVPALRD----AEIALMDIDP--ERLEESEIV-ARKLAESLGASAKITATTDRREAL   73 (431)
T ss_pred             cEEEEEC-CCHHHhHHHHHHHHhhCccCCC----CEEEEECCCH--HHHHHHHHH-HHHHHHhcCCCeEEEEECCHHHHh
Confidence            6999999 6999988776  555 233321    2899999974  5665 4444 4444322  235777788989999


Q ss_pred             CCCcEEEEeCCCC-CCCC--------------CcHHHH--------HHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh
Q 022227           80 TGVNIAVMVGGFP-RKEG--------------MERKDV--------MSKNVSIYKAQASALEQHAAPNCKVLVVANPANT  136 (300)
Q Consensus        80 ~~aDvVi~~ag~~-~~~g--------------~~r~dl--------~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~  136 (300)
                      +|||+||++++++ ++++              ++|.+.        +.+|+++++++++.|+++|| ++|+|++|||+|+
T Consensus        74 ~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p-~a~iin~tNP~di  152 (431)
T PRK15076         74 QGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCP-DALLLNYVNPMAM  152 (431)
T ss_pred             CCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCC-CeEEEEcCChHHH
Confidence            9999999999887 4444              456677        89999999999999999997 7999999999999


Q ss_pred             HHHHHHHHCCCCCCCcEEee--ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceee
Q 022227          137 NALILKEFAPSIPAKNITCL--TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV  201 (300)
Q Consensus       137 ~~~~~~~~~~~~p~~~i~~~--t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v  201 (300)
                      +|+.+++    +|+.++.|.  +.+|+.   +.+|+.+|+++++|+.++ .|   -+++.++.+.+.
T Consensus       153 vt~~~~~----~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~-~G---lNH~~W~~~~~~  208 (431)
T PRK15076        153 NTWAMNR----YPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRC-AG---INHMAWYLELER  208 (431)
T ss_pred             HHHHHhc----CCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEE-Ee---ecchhhheeeeE
Confidence            9999873    466676555  677774   789999999999999875 78   344677777776

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=99.88  E-value=6.7e-22  Score=188.24  Aligned_cols=180  Identities=20%  Similarity=0.169  Sum_probs=133.0

Q ss_pred             cEEEEEcCCChHHH-HHHHHHHhcccCCCCCC-eEEEEEecCCchhhhhhhhhhhhhhccC--CcccEEEeCChhhhcCC
Q 022227            6 VRVLVTGAAGQIGY-ALVPMIARGVMLGTDQP-VILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEACTG   81 (300)
Q Consensus         6 ~kV~IiGAaG~vG~-~la~~L~~~~~~~~~~~-~~l~L~D~~~~~~~l~g~~~dl~~~~~~--~~~~v~~~~~~~~a~~~   81 (300)
                      +||+|||| |++-. .+...|+...   +..+ .+|+|+|+++ +++++....-.......  ...+++.++|..+|++|
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~---~~l~~~ei~L~Did~-~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g   75 (419)
T cd05296           1 MKLTIIGG-GSSYTPELIEGLIRRY---EELPVTELVLVDIDE-EEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG   75 (419)
T ss_pred             CEEEEECC-chHhHHHHHHHHHhcc---ccCCCCEEEEecCCh-HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC
Confidence            59999995 55422 1333334321   1112 3899999983 46665432222222111  23478889999999999


Q ss_pred             CcEEEEeCCCCCCCCCcHHHH--------------------HHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           82 VNIAVMVGGFPRKEGMERKDV--------------------MSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~r~dl--------------------~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                      ||+||.++++...+++++.+.                    ..+|+++++++++.|+++|| ++|+|++|||++++|+++
T Consensus        76 adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~P-da~lin~TNP~~ivt~a~  154 (419)
T cd05296          76 ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAP-DAWLINFTNPAGIVTEAV  154 (419)
T ss_pred             CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCC-CeEEEEecCHHHHHHHHH
Confidence            999999998877665555442                    57899999999999999997 799999999999999999


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEec-CCCCceeeeccceee
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG-NHSSSQYPDVNHATV  201 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G-~hg~~~~p~~s~a~v  201 (300)
                      ++. +   +.++.|.|..+ .|+++.+|+.+|+++++|+.++ +| ||    +-++.+.+.
T Consensus       155 ~k~-~---~~rviGlc~~~-~r~~~~ia~~lg~~~~~v~~~v-~GlNH----~~w~~~~~~  205 (419)
T cd05296         155 LRH-T---GDRVIGLCNVP-IGLQRRIAELLGVDPEDVFIDY-AGLNH----LGWLRRVLL  205 (419)
T ss_pred             HHh-c---cCCEEeeCCcH-HHHHHHHHHHhCCCHHHceEEE-Eeccc----ceeeeeeeE
Confidence            987 3   45777778774 7999999999999999999875 79 88    456666666

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=99.86  E-value=9.8e-20  Score=174.05  Aligned_cols=180  Identities=19%  Similarity=0.232  Sum_probs=127.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCC-CCCC-eEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEeCChhhhcC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLG-TDQP-VILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAVEACT   80 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~-~~~~-~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~~~~~a~~   80 (300)
                      |||+|||| |+.   .++.|+..-+.. +..+ .+|+|+|+++  ++++- ...+.....   ....+++.|+|..+|++
T Consensus         1 ~KI~iIGa-GS~---~tp~li~~l~~~~~~l~~~ei~L~DId~--~rl~~-v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~   73 (437)
T cd05298           1 FKIVIAGG-GST---YTPGIVKSLLDRKEDFPLRELVLYDIDA--ERQEK-VAEAVKILFKENYPEIKFVYTTDPEEAFT   73 (437)
T ss_pred             CeEEEECC-cHH---HHHHHHHHHHhCcccCCCCEEEEECCCH--HHHHH-HHHHHHHHHHhhCCCeEEEEECCHHHHhC
Confidence            59999995 543   444443321111 1122 3899999974  56653 223322211   12347888999999999


Q ss_pred             CCcEEEEeCCC---C---------CCCCC---c-----HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH
Q 022227           81 GVNIAVMVGGF---P---------RKEGM---E-----RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        81 ~aDvVi~~ag~---~---------~~~g~---~-----r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                      ||||||.+.-+   .         .+.|.   +     -.-...+|+++++++++.|+++|| ++|+|++|||++++|++
T Consensus        74 gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~p-da~lin~tNP~~~vt~~  152 (437)
T cd05298          74 DADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSP-DAWILNYSNPAAIVAEA  152 (437)
T ss_pred             CCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCC-CeEEEEecCcHHHHHHH
Confidence            99999997532   1         12221   1     122357999999999999999997 79999999999999999


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceee
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV  201 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v  201 (300)
                      +++.   +|..++.|.|+--. -++..+|+.+|+++++|+..+ .|   -+++.++.+.+.
T Consensus       153 ~~~~---~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~-~G---lNH~~w~~~~~~  205 (437)
T cd05298         153 LRRL---FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDY-FG---LNHFGWFTKIYD  205 (437)
T ss_pred             HHHH---CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEE-Ee---ecchhhhhheEE
Confidence            9886   56678999998765 578889999999999998664 67   333566666666

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.83  E-value=2.8e-19  Score=171.19  Aligned_cols=178  Identities=18%  Similarity=0.175  Sum_probs=138.4

Q ss_pred             cEEEEEcCCChHHHHHHH--HHHhc-ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC--CcccEEEeCChhhhcC
Q 022227            6 VRVLVTGAAGQIGYALVP--MIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEACT   80 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~--~L~~~-~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~--~~~~v~~~~~~~~a~~   80 (300)
                      +||+|+| +|.+|++++.  .++.. .+.+    .+|+|+|+++  ++++....++.+....  ...++..++|.+++++
T Consensus         1 ~KIaIIG-aGs~G~a~a~~~~i~~~~~~~g----~eV~L~Did~--e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~   73 (423)
T cd05297           1 IKIAFIG-AGSVVFTKNLVGDLLKTPELSG----STIALMDIDE--ERLETVEILAKKIVEELGAPLKIEATTDRREALD   73 (423)
T ss_pred             CeEEEEC-CChHHhHHHHHHHHhcCCCCCC----CEEEEECCCH--HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhc
Confidence            4899999 6999998776  45433 2211    2899999974  6777666666554322  2357778889999999


Q ss_pred             CCcEEEEeCCCCCCCCCcH----------------------HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH
Q 022227           81 GVNIAVMVGGFPRKEGMER----------------------KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA  138 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g~~r----------------------~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~  138 (300)
                      |||+||.+++....++.++                      .....+|++++.++++.++++|| +++++++|||++++|
T Consensus        74 ~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNPv~i~t  152 (423)
T cd05297          74 GADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANPMAELT  152 (423)
T ss_pred             CCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCChHHHHH
Confidence            9999999987655444433                      33467899999999999999998 799999999999999


Q ss_pred             HHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEec-CCCCceeeeccceee
Q 022227          139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG-NHSSSQYPDVNHATV  201 (300)
Q Consensus       139 ~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G-~hg~~~~p~~s~a~v  201 (300)
                      +++++. ++   .++.|.|.. +.++++.+|+.+|+++++|+.++ +| ||    +.++.+.+.
T Consensus       153 ~~~~k~-~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~-~GlNH----~~w~~~~~~  206 (423)
T cd05297         153 WALNRY-TP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQV-AGINH----MAWLLKFEY  206 (423)
T ss_pred             HHHHHh-CC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEE-Eeecc----HhhhhhheE
Confidence            999998 34   466566654 77899999999999999999886 78 55    667777776

linked to 3D####ucture

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=99.71  E-value=1.9e-16  Score=133.87  Aligned_cols=156  Identities=21%  Similarity=0.235  Sum_probs=104.3

Q ss_pred             EEEEEcCCChHHHHH-HHH-HHhcccCCCCCCeEEEEEecCCchhhhhhh---hhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            7 RVLVTGAAGQIGYAL-VPM-IARGVMLGTDQPVILHMLDIPPAAEALNGV---KMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         7 kV~IiGAaG~vG~~l-a~~-L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~---~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      ||+||| +|++-+.. ... +....-+   ...+++|+|+++  ++|+..   +..+.... ....+++.++|.++|++|
T Consensus         1 KI~iIG-aGS~~~~~~l~~~l~~~~~l---~~~ei~L~Did~--~RL~~~~~~~~~~~~~~-~~~~~v~~ttd~~eAl~g   73 (183)
T PF02056_consen    1 KITIIG-AGSTYFPLLLLGDLLRTEEL---SGSEIVLMDIDE--ERLEIVERLARRMVEEA-GADLKVEATTDRREALEG   73 (183)
T ss_dssp             EEEEET-TTSCCHHHHHHHHHHCTTTS---TEEEEEEE-SCH--HHHHHHHHHHHHHHHHC-TTSSEEEEESSHHHHHTT
T ss_pred             CEEEEC-CchHhhHHHHHHHHhcCccC---CCcEEEEEcCCH--HHHHHHHHHHHHHHHhc-CCCeEEEEeCCHHHHhCC
Confidence            899999 47655442 222 2222211   123899999974  677632   11222211 223578889999999999


Q ss_pred             CcEEEEeCCC------------CCCCCCcH----------HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH
Q 022227           82 VNIAVMVGGF------------PRKEGMER----------KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL  139 (300)
Q Consensus        82 aDvVi~~ag~------------~~~~g~~r----------~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~  139 (300)
                      ||+||.+..+            |.+.|...          .-...++++.+.++++.|+++|| ++|+|++|||+..+|.
T Consensus        74 ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~P-dAw~iNytNP~~~vt~  152 (183)
T PF02056_consen   74 ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCP-DAWLINYTNPMGIVTE  152 (183)
T ss_dssp             ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTT-TSEEEE-SSSHHHHHH
T ss_pred             CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCC-CcEEEeccChHHHHHH
Confidence            9999998643            33433211          23356899999999999999997 8999999999999999


Q ss_pred             HHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCC
Q 022227          140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNV  174 (300)
Q Consensus       140 ~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v  174 (300)
                      .+.+..   |..++.|.|+... -+...+|+.||.
T Consensus       153 a~~r~~---~~~k~vGlCh~~~-~~~~~la~~L~~  183 (183)
T PF02056_consen  153 ALSRYT---PKIKVVGLCHGPQ-GTRRQLAKLLGM  183 (183)
T ss_dssp             HHHHHS---TTSEEEEE-SHHH-HHHHHHHHHHT-
T ss_pred             HHHHhC---CCCCEEEECCCHH-HHHHHHHHHhCc
Confidence            999874   4357889998754 567788888773

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=99.71  E-value=9.9e-17  Score=150.81  Aligned_cols=183  Identities=20%  Similarity=0.208  Sum_probs=126.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCC-CCCCe-EEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEeCChhh
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLG-TDQPV-ILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAVE   77 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~-~~~~~-~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~~~~~   77 (300)
                      |+..||+|||| |+++..   .++.+.+.. +..+. ++.|+|+++  ++++ ...++.+...   -...+++.++|.++
T Consensus         1 m~~~KI~iIGg-GSt~tp---~~v~g~l~~~e~l~~~el~L~Did~--~r~~-~i~~~~~~~v~~~g~~~kv~~ttd~~e   73 (442)
T COG1486           1 MKKFKIVIIGG-GSTYTP---KLLLGDLARTEELPVRELALYDIDE--ERLK-IIAILAKKLVEEAGAPVKVEATTDRRE   73 (442)
T ss_pred             CCcceEEEECC-CccccH---HHHHHHHhcCccCCcceEEEEeCCH--HHHH-HHHHHHHHHHHhhCCCeEEEEecCHHH
Confidence            35679999995 655443   333332221 22233 899999974  5655 2233332211   12257888999999


Q ss_pred             hcCCCcEEEEeCCC------------CCCCCCcHH--------HHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhH
Q 022227           78 ACTGVNIAVMVGGF------------PRKEGMERK--------DVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN  137 (300)
Q Consensus        78 a~~~aDvVi~~ag~------------~~~~g~~r~--------dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~  137 (300)
                      ||+|||||+.+.-+            |.|.|.-+.        -.-.++++++.+|++.|+++|| +||+|++|||+..+
T Consensus        74 Al~gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P-~Aw~lNytNP~~~v  152 (442)
T COG1486          74 ALEGADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCP-NAWMLNYTNPAAIV  152 (442)
T ss_pred             HhcCCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCC-CceEEeccChHHHH
Confidence            99999999997522            222221111        1235899999999999999996 89999999999999


Q ss_pred             HHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCC-CCeEEEEEecCCCCceeeeccceee
Q 022227          138 ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQV-SDVKNVIIWGNHSSSQYPDVNHATV  201 (300)
Q Consensus       138 ~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~-~~V~~~~V~G~hg~~~~p~~s~a~v  201 (300)
                      |+++.++.   |.-++.|.|+... -....+|+.||+++ .+++.- +.|   -+++.+|..++.
T Consensus       153 TeAv~r~~---~~~K~VGlCh~~~-g~~~~lAe~L~~~~~~~l~~~-~aG---lNH~~w~~~~~~  209 (442)
T COG1486         153 TEAVRRLY---PKIKIVGLCHGPI-GIAMELAEVLGLEPREDLRYR-VAG---LNHMVWILRVRD  209 (442)
T ss_pred             HHHHHHhC---CCCcEEeeCCchH-HHHHHHHHHhCCCchhceeEE-Eee---chhhhhhhHhhh
Confidence            99999973   4237889998743 56888999999975 999854 477   334566666666

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=99.35  E-value=9.6e-12  Score=113.60  Aligned_cols=173  Identities=14%  Similarity=0.119  Sum_probs=112.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEE-EecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhhc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHM-LDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L-~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a~   79 (300)
                      ..++|+||||+||||++++..|+++|+       +|+- +..++++++ ..+..+|......   ...++.-...+.+|+
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY-------~V~gtVR~~~~~k~-~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai   76 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY-------TVRGTVRDPEDEKK-TEHLRKLEGAKERLKLFKADLLDEGSFDKAI   76 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC-------EEEEEEcCcchhhh-HHHHHhcccCcccceEEeccccccchHHHHH
Confidence            568999999999999999999999998       3333 322222221 1133344322211   123444455788999


Q ss_pred             CCCcEEEEeCCCCCCCCC-cHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCC--CCC------
Q 022227           80 TGVNIAVMVGGFPRKEGM-ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS--IPA------  150 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~g~-~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~--~p~------  150 (300)
                      ++||.|||+|.+...... ...+++..+++.+.++.++++++.  .++.+|+|++...+.+-.....++  ++.      
T Consensus        77 ~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~--sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~  154 (327)
T KOG1502|consen   77 DGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK--SVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDL  154 (327)
T ss_pred             hCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC--CcceEEEeccHHHhccCCcCCCCCcccccccCCcH
Confidence            999999999987654333 345789999999999999999985  588899998876443210000000  000      


Q ss_pred             ------CcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEec
Q 022227          151 ------KNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG  186 (300)
Q Consensus       151 ------~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G  186 (300)
                            +..|..++.-.++....+|++-+++...|....|+|
T Consensus       155 ~~~~~~~~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~G  196 (327)
T KOG1502|consen  155 DFCRCKKLWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFG  196 (327)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHhCCccEEEecCCceEC
Confidence                  113455666667777888888887777666555555

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=99.14  E-value=3.6e-10  Score=105.72  Aligned_cols=175  Identities=15%  Similarity=0.139  Sum_probs=108.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch--hhhhhhhhhhhhhccC----CcccEEEeCChhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--EALNGVKMELVDAAFP----LLKGVVATTDAVE   77 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~--~~l~g~~~dl~~~~~~----~~~~v~~~~~~~~   77 (300)
                      +++||.||||+||+|++++..|+..+.       +|+.+|.....  ..+.............    ...++.-...+.+
T Consensus        14 ~~~~vlVtGatGfiG~~lv~~L~~~g~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~   86 (348)
T PRK15181         14 APKRWLITGVAGFIGSGLLEELLFLNQ-------TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQK   86 (348)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHHCCC-------EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHH
Confidence            457999999999999999999998874       78888874210  0010000000000000    0011111113345


Q ss_pred             hcCCCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH----HHHHCCCCCCC
Q 022227           78 ACTGVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEFAPSIPAK  151 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~----~~~~~~~~p~~  151 (300)
                      .++++|+|||+|+....+  ..+..+....|+....++.+.+++.+.+  ++|++|.. .+....    ..+..+ ..+.
T Consensus        87 ~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~--~~v~~SS~-~vyg~~~~~~~~e~~~-~~p~  162 (348)
T PRK15181         87 ACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS--SFTYAASS-STYGDHPDLPKIEERI-GRPL  162 (348)
T ss_pred             HhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC--eEEEeech-HhhCCCCCCCCCCCCC-CCCC
Confidence            578999999999864322  2344567889999999999999887432  46666542 211000    001001 1123


Q ss_pred             cEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          152 NITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       152 ~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ..++.+++..+++...+++..+++...++...|+|.+.
T Consensus       163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~  200 (348)
T PRK15181        163 SPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQ  200 (348)
T ss_pred             ChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCC
Confidence            46888888888887777888899999999999999764

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=99.08  E-value=2.5e-10  Score=103.84  Aligned_cols=116  Identities=20%  Similarity=0.245  Sum_probs=81.1

Q ss_pred             EEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc--CCcccEEEeCChhhhcCCCcEEE
Q 022227            9 LVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--PLLKGVVATTDAVEACTGVNIAV   86 (300)
Q Consensus         9 ~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~--~~~~~v~~~~~~~~a~~~aDvVi   86 (300)
                      +||||+||+|++++..|++.|..     .+|+.+|+.+....+.    ++.....  ....+++-..+..++++++|+||
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~-----~~Vr~~d~~~~~~~~~----~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~   71 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYI-----YEVRVLDRSPPPKFLK----DLQKSGVKEYIQGDITDPESLEEALEGVDVVF   71 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCc-----eEEEEcccccccccch----hhhcccceeEEEeccccHHHHHHHhcCCceEE
Confidence            48999999999999999998731     2789999865322111    1111110  11234444457889999999999


Q ss_pred             EeCCCCCCCC-CcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh
Q 022227           87 MVGGFPRKEG-MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT  136 (300)
Q Consensus        87 ~~ag~~~~~g-~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~  136 (300)
                      |+|+.....+ .++..+...|+..++++++++.+.   +++.+|+|+++.+
T Consensus        72 H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~---~VkrlVytSS~~v  119 (280)
T PF01073_consen   72 HTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKA---GVKRLVYTSSISV  119 (280)
T ss_pred             EeCccccccCcccHHHHHHHHHHHHHHHHHHHHHc---CCCEEEEEcCcce
Confidence            9998654334 456778899999999999999986   3566777666543

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=99.07  E-value=2e-09  Score=103.88  Aligned_cols=170  Identities=13%  Similarity=0.050  Sum_probs=107.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      .++|||.||||+||||++++..|+.+|.       +|+.+|.... .... ....+.. . +. ..+...+-...++.++
T Consensus       118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~-------~V~~ldr~~~-~~~~-~~~~~~~-~-~~-~~~~~~Di~~~~~~~~  185 (436)
T PLN02166        118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD-------EVIVIDNFFT-GRKE-NLVHLFG-N-PR-FELIRHDVVEPILLEV  185 (436)
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHCCC-------EEEEEeCCCC-ccHh-Hhhhhcc-C-Cc-eEEEECccccccccCC
Confidence            3568999999999999999999998875       7889986421 1100 0001100 0 00 0111112223457789


Q ss_pred             cEEEEeCCCCC--CCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHC----CCCCCCc
Q 022227           83 NIAVMVGGFPR--KEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFA----PSIPAKN  152 (300)
Q Consensus        83 DvVi~~ag~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~----~~~p~~~  152 (300)
                      |+|||+|+...  ....+..+.+..|+....++++++++.+   +++|++|+.. +...    ...+..    ....+..
T Consensus       186 D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g---~r~V~~SS~~-VYg~~~~~p~~E~~~~~~~p~~p~s  261 (436)
T PLN02166        186 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG---ARFLLTSTSE-VYGDPLEHPQKETYWGNVNPIGERS  261 (436)
T ss_pred             CEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhC---CEEEEECcHH-HhCCCCCCCCCccccccCCCCCCCC
Confidence            99999997532  2223556778899999999999999874   3667666532 1100    000000    0011233


Q ss_pred             EEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          153 ITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       153 i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      .++.+++..+++...+++..+++..-++...|+|.+
T Consensus       262 ~Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~  297 (436)
T PLN02166        262 CYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPR  297 (436)
T ss_pred             chHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Confidence            577888888888777788889998888888889965

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=99.03  E-value=1.5e-09  Score=97.37  Aligned_cols=160  Identities=19%  Similarity=0.137  Sum_probs=113.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc--hhhhhhh-----hhhhhhhccCCcccEEEeCChhhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA--AEALNGV-----KMELVDAAFPLLKGVVATTDAVEA   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~--~~~l~g~-----~~dl~~~~~~~~~~v~~~~~~~~a   78 (300)
                      |+|.|+||+|+||||.+..|++.|+       +++.+|...+  .+.+...     ..|+.|..           -+.+.
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~-------~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~-----------~L~~v   62 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGH-------EVVVLDNLSNGHKIALLKLQFKFYEGDLLDRA-----------LLTAV   62 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCC-------eEEEEecCCCCCHHHhhhccCceEEeccccHH-----------HHHHH
Confidence            5899999999999999999999876       8999997432  1212111     12333222           12233


Q ss_pred             cC--CCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH-----HHHHHHCCCCC
Q 022227           79 CT--GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA-----LILKEFAPSIP  149 (300)
Q Consensus        79 ~~--~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~-----~~~~~~~~~~p  149 (300)
                      |+  ..|.|||.||...-.  -+....+...|+-.+..+.++|.+++.   +-+|+|+++.+-.     ++ .+.. ...
T Consensus        63 f~~~~idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv---~~~vFSStAavYG~p~~~PI-~E~~-~~~  137 (329)
T COG1087          63 FEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGV---KKFIFSSTAAVYGEPTTSPI-SETS-PLA  137 (329)
T ss_pred             HHhcCCCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCC---CEEEEecchhhcCCCCCccc-CCCC-CCC
Confidence            32  689999999875422  134678899999999999999999964   4567776664211     11 1110 112


Q ss_pred             CCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          150 AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       150 ~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      +.+-+|-|+|-.+++.+.+++..+.+..-+|.+++.|-|
T Consensus       138 p~NPYG~sKlm~E~iL~d~~~a~~~~~v~LRYFN~aGA~  176 (329)
T COG1087         138 PINPYGRSKLMSEEILRDAAKANPFKVVILRYFNVAGAC  176 (329)
T ss_pred             CCCcchhHHHHHHHHHHHHHHhCCCcEEEEEecccccCC
Confidence            346789999999999999999999999999999999877

>PLN02206 UDP-glucuronate decarboxylase

Probab=99.00  E-value=5.3e-09  Score=101.07  Aligned_cols=170  Identities=14%  Similarity=0.028  Sum_probs=105.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +.|||.||||+||||++++..|+++|.       +|+.+|.... .+ .....+.  ...+. .++...+-...++.++|
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-------~V~~ld~~~~-~~-~~~~~~~--~~~~~-~~~i~~D~~~~~l~~~D  185 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGD-------SVIVVDNFFT-GR-KENVMHH--FSNPN-FELIRHDVVEPILLEVD  185 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcC-------EEEEEeCCCc-cc-hhhhhhh--ccCCc-eEEEECCccChhhcCCC
Confidence            458999999999999999999998875       6888875321 11 1011110  00000 01111112334567899


Q ss_pred             EEEEeCCCCC--CCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH---HHHHHCC-C-CC--CCcEE
Q 022227           84 IAVMVGGFPR--KEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL---ILKEFAP-S-IP--AKNIT  154 (300)
Q Consensus        84 vVi~~ag~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~---~~~~~~~-~-~p--~~~i~  154 (300)
                      +|||+|+...  ....+..+.+..|+....++++++++.+   +++|++|+..-.-..   ...+... . .|  +...+
T Consensus       186 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g---~r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y  262 (442)
T PLN02206        186 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCY  262 (442)
T ss_pred             EEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC---CEEEEECChHHhCCCCCCCCCccccccCCCCCccchH
Confidence            9999997643  1223456778899999999999998874   367766653210000   0000000 0 01  12356


Q ss_pred             eeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          155 CLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       155 ~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      +.++...+++...+.+..+++..-++...|+|.+
T Consensus       263 ~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~  296 (442)
T PLN02206        263 DEGKRTAETLTMDYHRGANVEVRIARIFNTYGPR  296 (442)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence            7788887777777777789988888888889975

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=99.00  E-value=2.3e-09  Score=101.26  Aligned_cols=172  Identities=14%  Similarity=0.137  Sum_probs=105.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      .+.|||+|+||+||||++++..|...|+       +|+.+|...+ ..+....  +.. . ....++.-.....++++++
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~-------~V~~v~r~~~-~~~~~~~--~~~-~-~~~~Dl~d~~~~~~~~~~~   86 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGH-------YIIASDWKKN-EHMSEDM--FCH-E-FHLVDLRVMENCLKVTKGV   86 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCC-------EEEEEEeccc-ccccccc--ccc-e-EEECCCCCHHHHHHHHhCC
Confidence            3568999999999999999999998775       7888886431 1111000  000 0 0001111111234557899


Q ss_pred             cEEEEeCCCCCCCC---CcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH--------HHHHCC-CCCC
Q 022227           83 NIAVMVGGFPRKEG---MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI--------LKEFAP-SIPA  150 (300)
Q Consensus        83 DvVi~~ag~~~~~g---~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~--------~~~~~~-~~p~  150 (300)
                      |+|||+|+.....+   .+.......|+....++++.+++...+  ++|.+|+..- ....        ..+..+ ...+
T Consensus        87 D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk--~~V~~SS~~v-Yg~~~~~~~~~~~~E~~~~p~~p  163 (370)
T PLN02695         87 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVK--RFFYASSACI-YPEFKQLETNVSLKESDAWPAEP  163 (370)
T ss_pred             CEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCC--EEEEeCchhh-cCCccccCcCCCcCcccCCCCCC
Confidence            99999987532111   122335678999999999999887532  5666665321 0000        011000 1223


Q ss_pred             CcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          151 KNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       151 ~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ...++.++...+++...+++..|++..-++...|+|.++
T Consensus       164 ~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~  202 (370)
T PLN02695        164 QDAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFG  202 (370)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCC
Confidence            346777888888877777888899999999988999875

>PLN00198 anthocyanidin reductase; Provisional

Probab=99.00  E-value=4.3e-09  Score=97.84  Aligned_cols=176  Identities=11%  Similarity=0.106  Sum_probs=105.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhh--hhhhhh-ccC-CcccEEEeCChhhhc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK--MELVDA-AFP-LLKGVVATTDAVEAC   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~--~dl~~~-~~~-~~~~v~~~~~~~~a~   79 (300)
                      ..+||.||||+||+|++++..|++.|.       +|++++++..  ......  ..+... ... ...++.-..+..+.+
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~g~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~   78 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQKGY-------AVNTTVRDPE--NQKKIAHLRALQELGDLKIFGADLTDEESFEAPI   78 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHCCC-------EEEEEECCCC--CHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHH
Confidence            457899999999999999999998774       6766655421  111000  001000 000 011111112345668


Q ss_pred             CCCcEEEEeCCCCCCCCCcH-HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH-------HHHHH-------
Q 022227           80 TGVNIAVMVGGFPRKEGMER-KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL-------ILKEF-------  144 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~g~~r-~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~-------~~~~~-------  144 (300)
                      +++|+|||+|+.......+. .++...|+....++++.+.+.... .++|++|+-...-..       ...+.       
T Consensus        79 ~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~-~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~  157 (338)
T PLN00198         79 AGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSV-KRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEF  157 (338)
T ss_pred             hcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCc-cEEEEeecceeeeccCCCCCCceeccccCCchhh
Confidence            89999999998543222222 346688999999999999876421 256665543211000       00000       


Q ss_pred             -CCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          145 -APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       145 -~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                       ....++...++.+++..+++...+++..|++..-++...|+|..-
T Consensus       158 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~  203 (338)
T PLN00198        158 LTSEKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSL  203 (338)
T ss_pred             hhhcCCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCc
Confidence             001123345778888888888888888899999999888999753

>PLN02650 dihydroflavonol-4-reductase

Probab=98.99  E-value=2.7e-09  Score=99.71  Aligned_cols=178  Identities=15%  Similarity=0.122  Sum_probs=108.6

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc-----cC-CcccEEEeCC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-----FP-LLKGVVATTD   74 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~-----~~-~~~~v~~~~~   74 (300)
                      |-...++|.||||+||||++++..|+..|.       +|++++.+.  +.+... .++....     .. ...++.-...
T Consensus         1 ~~~~~k~iLVTGatGfIGs~l~~~L~~~G~-------~V~~~~r~~--~~~~~~-~~~~~~~~~~~~~~~v~~Dl~d~~~   70 (351)
T PLN02650          1 MGSQKETVCVTGASGFIGSWLVMRLLERGY-------TVRATVRDP--ANVKKV-KHLLDLPGATTRLTLWKADLAVEGS   70 (351)
T ss_pred             CCCCCCEEEEeCCcHHHHHHHHHHHHHCCC-------EEEEEEcCc--chhHHH-HHHHhccCCCCceEEEEecCCChhh
Confidence            555678999999999999999999998775       677776643  222111 1111100     00 0112222224


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCCCc-HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH-----HHHHHHCCC-
Q 022227           75 AVEACTGVNIAVMVGGFPRKEGME-RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA-----LILKEFAPS-  147 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~g~~-r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~-----~~~~~~~~~-  147 (300)
                      ..++++++|+|||+|+.......+ ..+.+..|+..+.++++.+.+.+. -.++|++|.....-.     ....+.... 
T Consensus        71 ~~~~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~-~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~  149 (351)
T PLN02650         71 FDDAIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKT-VRRIVFTSSAGTVNVEEHQKPVYDEDCWSD  149 (351)
T ss_pred             HHHHHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCC-ceEEEEecchhhcccCCCCCCccCcccCCc
Confidence            556788999999999764322222 235678899999999999988642 125666654321100     000000000 


Q ss_pred             -----CC--CCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          148 -----IP--AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       148 -----~p--~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                           .+  +...++.+++..+.+...+++..|++..-++...|+|..-
T Consensus       150 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~  198 (351)
T PLN02650        150 LDFCRRKKMTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFI  198 (351)
T ss_pred             hhhhhccccccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCC
Confidence                 00  1124677788888888788888899988888888899753

>PLN02427 UDP-apiose/xylose synthase

Probab=98.98  E-value=1.7e-09  Score=102.46  Aligned_cols=172  Identities=10%  Similarity=0.069  Sum_probs=103.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcc-cCCCCCCeEEEEEecCCchhhhhhhhhhhh----hhccC-CcccEEEeCChhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGV-MLGTDQPVILHMLDIPPAAEALNGVKMELV----DAAFP-LLKGVVATTDAVE   77 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~-~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~----~~~~~-~~~~v~~~~~~~~   77 (300)
                      ++|||+||||+||||++++..|+.++ .       +|+.+|...  ++.... .+..    +.... ...++.-..+..+
T Consensus        13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~-------~V~~l~r~~--~~~~~l-~~~~~~~~~~~~~~~~~Dl~d~~~l~~   82 (386)
T PLN02427         13 KPLTICMIGAGGFIGSHLCEKLMTETPH-------KVLALDVYN--DKIKHL-LEPDTVPWSGRIQFHRINIKHDSRLEG   82 (386)
T ss_pred             cCcEEEEECCcchHHHHHHHHHHhcCCC-------EEEEEecCc--hhhhhh-hccccccCCCCeEEEEcCCCChHHHHH
Confidence            56899999999999999999999863 3       688888643  221110 0000    00000 0011111123456


Q ss_pred             hcCCCcEEEEeCCCCCC--CCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCC-----
Q 022227           78 ACTGVNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAP-----  146 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~-----  146 (300)
                      +++++|+|||+|+....  ...+..+.+..|+....++++.+++.+   .++|++|+.. +...    ...+..+     
T Consensus        83 ~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~---~r~v~~SS~~-vYg~~~~~~~~e~~p~~~~~  158 (386)
T PLN02427         83 LIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN---KRLIHFSTCE-VYGKTIGSFLPKDHPLRQDP  158 (386)
T ss_pred             HhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC---CEEEEEeeee-eeCCCcCCCCCccccccccc
Confidence            78899999999986431  112334566789998999999887764   2567766531 1000    0000000     


Q ss_pred             ----------CC---C---CCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          147 ----------SI---P---AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       147 ----------~~---p---~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                                ..   |   +...++.+++..+++...+++..+++..-++...|+|.+.
T Consensus       159 ~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~  217 (386)
T PLN02427        159 AFYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRM  217 (386)
T ss_pred             ccccccccccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCC
Confidence                      00   0   1124666777777777777777899999999888999753

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.94  E-value=4.8e-09  Score=96.95  Aligned_cols=170  Identities=11%  Similarity=0.011  Sum_probs=111.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhh----hhhhh--c----cCCcccEEEeCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM----ELVDA--A----FPLLKGVVATTD   74 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~----dl~~~--~----~~~~~~v~~~~~   74 (300)
                      ..||+|+| +|.+|+.++..++..|+       +|+|+|.++  +.++....    .+...  .    .....+++.+++
T Consensus         7 i~~VaVIG-aG~MG~giA~~~a~aG~-------~V~l~D~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~   76 (321)
T PRK07066          7 IKTFAAIG-SGVIGSGWVARALAHGL-------DVVAWDPAP--GAEAALRANVANAWPALERQGLAPGASPARLRFVAT   76 (321)
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCC
Confidence            46899999 79999999999998876       899999974  22221111    01110  0    011246677778


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCC-------
Q 022227           75 AVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS-------  147 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~-------  147 (300)
                      +++++++||+||.+.              .+|.++.+++.+.+.+.+++++  |+.||.+.....-+......       
T Consensus        77 l~~av~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s~la~~~~~p~R~~g~  140 (321)
T PRK07066         77 IEACVADADFIQESA--------------PEREALKLELHERISRAAKPDA--IIASSTSGLLPTDFYARATHPERCVVG  140 (321)
T ss_pred             HHHHhcCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHHHHHHhcCCcccEEEE
Confidence            888999999999973              3456777888899999998875  88888876443333322111       


Q ss_pred             ---CCCCc-----E--EeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC-ceeeeccceee
Q 022227          148 ---IPAKN-----I--TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHATV  201 (300)
Q Consensus       148 ---~p~~~-----i--~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~-~~~p~~s~a~v  201 (300)
                         .|+..     +  +..|.-++......+.+.+|..|.-++.-. -|+..+ -+++.|+.|.-
T Consensus       141 HffnP~~~~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~-pGFi~NRl~~a~~~EA~~  204 (321)
T PRK07066        141 HPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEV-PGFIADRLLEALWREALH  204 (321)
T ss_pred             ecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCC-ccHHHHHHHHHHHHHHHH
Confidence               13331     2  224667766666677788998887663222 477666 67777777654

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=98.93  E-value=7.6e-09  Score=95.18  Aligned_cols=172  Identities=15%  Similarity=0.099  Sum_probs=103.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh-----cc-CCcccEEEeCChhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-----AF-PLLKGVVATTDAVE   77 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~-----~~-~~~~~v~~~~~~~~   77 (300)
                      +.+||.||||+||||++++..|+..|.       +++.++.+..  ... ....+...     .. ....++.-.....+
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~-------~V~~~~r~~~--~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~   72 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGY-------TVKATVRDPN--DPK-KTEHLLALDGAKERLHLFKANLLEEGSFDS   72 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCC-------EEEEEEcCCC--chh-hHHHHHhccCCCCceEEEeccccCcchHHH
Confidence            457999999999999999999998875       6777766431  111 01111100     00 01112222234567


Q ss_pred             hcCCCcEEEEeCCCCCCCCCcH-HHHHHhhHHHHHHHHHHHhhh-cCCCeEEEEecCchhhHHHH---------HHHHCC
Q 022227           78 ACTGVNIAVMVGGFPRKEGMER-KDVMSKNVSIYKAQASALEQH-AAPNCKVLVVANPANTNALI---------LKEFAP  146 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~g~~r-~dl~~~N~~i~~~i~~~i~~~-~~~~~~viv~sNP~~~~~~~---------~~~~~~  146 (300)
                      +++++|+|||+|+......... .+.+..|+....++++.+.+. .. . ++|++|. .....+-         +.+..+
T Consensus        73 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~-~~v~~SS-~~~~~y~~~~~~~~~~~~E~~~  149 (322)
T PLN02662         73 VVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSV-K-RVVVTSS-MAAVAYNGKPLTPDVVVDETWF  149 (322)
T ss_pred             HHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCC-C-EEEEccC-HHHhcCCCcCCCCCCcCCcccC
Confidence            7899999999998643222222 367788999999999998876 32 1 4555543 3211110         000000


Q ss_pred             CCCC-----CcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          147 SIPA-----KNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       147 ~~p~-----~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      ..|.     ...++.++...+++...+++..+++..-++...|+|..
T Consensus       150 ~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~  196 (322)
T PLN02662        150 SDPAFCEESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPL  196 (322)
T ss_pred             CChhHhhcccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCC
Confidence            0010     12456667777777666777889988888888888864

>PLN02572 UDP-sulfoquinovose synthase

Probab=98.90  E-value=1.3e-08  Score=98.33  Aligned_cols=179  Identities=13%  Similarity=0.191  Sum_probs=105.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc--hh------hh---hhhhhhh---hhh---ccC-C
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA--AE------AL---NGVKMEL---VDA---AFP-L   65 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~--~~------~l---~g~~~dl---~~~---~~~-~   65 (300)
                      +.+||.||||+||||++++..|+..|.       +|+++|....  .+      .+   ......+   .+.   ... .
T Consensus        46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v  118 (442)
T PLN02572         46 KKKKVMVIGGDGYCGWATALHLSKRGY-------EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELY  118 (442)
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC-------eEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEE
Confidence            347899999999999999999998875       7888874210  00      00   0000000   000   000 0


Q ss_pred             cccEEEeCChhhhcC--CCcEEEEeCCCCCCC-C-CcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh--
Q 022227           66 LKGVVATTDAVEACT--GVNIAVMVGGFPRKE-G-MER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT--  136 (300)
Q Consensus        66 ~~~v~~~~~~~~a~~--~aDvVi~~ag~~~~~-g-~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~--  136 (300)
                      ..++.-.....++++  ++|+|||+|+....+ . .+.   ...+..|+..+.++++.+.+++.+ .++|.+|...-.  
T Consensus       119 ~~Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~-~~~V~~SS~~vYG~  197 (442)
T PLN02572        119 VGDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPD-CHLVKLGTMGEYGT  197 (442)
T ss_pred             ECCCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCC-ccEEEEecceecCC
Confidence            011111112344555  489999998654321 1 111   234578999999999999988642 346655532210  


Q ss_pred             ----HHH-HHH------HHCCCCC--CCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          137 ----NAL-ILK------EFAPSIP--AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       137 ----~~~-~~~------~~~~~~p--~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                          +.. .+.      +.....|  +...|+.+++..+.+...+++.+|++...++...|+|.+..
T Consensus       198 ~~~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~  264 (442)
T PLN02572        198 PNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTD  264 (442)
T ss_pred             CCCCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCc
Confidence                000 000      0000011  23578999998888888888999999999999999997643

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=98.90  E-value=1.3e-08  Score=93.90  Aligned_cols=177  Identities=14%  Similarity=0.080  Sum_probs=107.7

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhh--h---ccC-CcccEEEeCC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD--A---AFP-LLKGVVATTD   74 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~--~---~~~-~~~~v~~~~~   74 (300)
                      |..+.++|.||||+|+||++++..|+..|.       ++++++++.  +.+... ..+..  .   ... ...++.-..+
T Consensus         1 ~~~~~k~vlVtG~~G~IG~~l~~~L~~~G~-------~V~~~~r~~--~~~~~~-~~~~~~~~~~~~~~~~~~D~~d~~~   70 (325)
T PLN02989          1 MADGGKVVCVTGASGYIASWIVKLLLFRGY-------TINATVRDP--KDRKKT-DHLLALDGAKERLKLFKADLLDEGS   70 (325)
T ss_pred             CCCCCCEEEEECCchHHHHHHHHHHHHCCC-------EEEEEEcCC--cchhhH-HHHHhccCCCCceEEEeCCCCCchH
Confidence            556678999999999999999999998875       676666543  111111 01100  0   000 0112222223


Q ss_pred             hhhhcCCCcEEEEeCCCCCCC-C-CcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH--------HHHHH
Q 022227           75 AVEACTGVNIAVMVGGFPRKE-G-MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL--------ILKEF  144 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~-g-~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~--------~~~~~  144 (300)
                      ..++++++|+|||+||..... . ....+.+..|+....++.+.+.++... .++|++|+-......        .+.+.
T Consensus        71 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~-~~iv~~SS~~~~~~~~~~~~~~~~~~E~  149 (325)
T PLN02989         71 FELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSV-KRVILTSSMAAVLAPETKLGPNDVVDET  149 (325)
T ss_pred             HHHHHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCc-eEEEEecchhheecCCccCCCCCccCcC
Confidence            456678899999999864321 1 123456788999999999998876321 256665543221110        00111


Q ss_pred             CCCCC-----CCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          145 APSIP-----AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       145 ~~~~p-----~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      .+..|     +...++.+++..+++...+++..+++..-++...|+|..
T Consensus       150 ~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~  198 (325)
T PLN02989        150 FFTNPSFAEERKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPI  198 (325)
T ss_pred             CCCchhHhcccccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCC
Confidence            01111     123577788888888888888889988888888888964

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=98.89  E-value=1.3e-08  Score=93.82  Aligned_cols=177  Identities=14%  Similarity=0.096  Sum_probs=103.6

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc-hhhhhhhhhhhhhh--cc-CCcccEEEeCChh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA-AEALNGVKMELVDA--AF-PLLKGVVATTDAV   76 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~-~~~l~g~~~dl~~~--~~-~~~~~v~~~~~~~   76 (300)
                      |.-+.++|.||||+|+||++++..|+..|+       +|++...+.. .+++... ......  .. ....++.-.....
T Consensus         1 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~   72 (322)
T PLN02986          1 MNGGGKLVCVTGASGYIASWIVKLLLLRGY-------TVKATVRDLTDRKKTEHL-LALDGAKERLKLFKADLLEESSFE   72 (322)
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEECCCcchHHHHHH-HhccCCCCceEEEecCCCCcchHH
Confidence            554567999999999999999999998875       5664433321 1111100 000000  00 0011222222456


Q ss_pred             hhcCCCcEEEEeCCCCCCC-CCcHHHHHHhhHHHHHHHHHHHhhhcCCCe-EEEEecCchhhHHHH---------HHHHC
Q 022227           77 EACTGVNIAVMVGGFPRKE-GMERKDVMSKNVSIYKAQASALEQHAAPNC-KVLVVANPANTNALI---------LKEFA  145 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~-g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~-~viv~sNP~~~~~~~---------~~~~~  145 (300)
                      ++++++|+|||+|+..... .....+++..|+....++.+.+.+..  ++ ++|++|..... .+.         ..+..
T Consensus        73 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~--~v~rvV~~SS~~~~-~~~~~~~~~~~~~~E~~  149 (322)
T PLN02986         73 QAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETP--SVKRVILTSSTAAV-LFRQPPIEANDVVDETF  149 (322)
T ss_pred             HHHhCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcC--CccEEEEecchhhe-ecCCccCCCCCCcCccc
Confidence            7788999999999864221 11223567889999999999988752  23 45555443221 110         00000


Q ss_pred             CCCC-----CCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          146 PSIP-----AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       146 ~~~p-----~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      +..|     +...++.++...+++...+++..+++...++...|+|..
T Consensus       150 ~~~p~~~~~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~  197 (322)
T PLN02986        150 FSDPSLCRETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPL  197 (322)
T ss_pred             CCChHHhhccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCC
Confidence            0001     123567777777777777778889888888888888863

>PLN02214 cinnamoyl-CoA reductase

Probab=98.89  E-value=1.2e-08  Score=95.29  Aligned_cols=172  Identities=15%  Similarity=0.099  Sum_probs=106.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh-hhhhhhhhhc--c-CCcccEEEeCChhhhc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN-GVKMELVDAA--F-PLLKGVVATTDAVEAC   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~-g~~~dl~~~~--~-~~~~~v~~~~~~~~a~   79 (300)
                      +.++|+||||+||+|++++..|++.|+       +|+.++++.+  ... .....+....  . ....++.-..+..+++
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~   79 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGY-------TVKGTVRNPD--DPKNTHLRELEGGKERLILCKADLQDYEALKAAI   79 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-------EEEEEeCCch--hhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHH
Confidence            346899999999999999999998875       6777776431  111 0011111100  0 0011222223456778


Q ss_pred             CCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH-------HHHHHCC-C--CC
Q 022227           80 TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL-------ILKEFAP-S--IP  149 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~-------~~~~~~~-~--~p  149 (300)
                      +++|+|||+|+...   .+..+.+..|+..+.++++++.+.+. . ++|++|+-..+...       .+.+..+ .  .+
T Consensus        80 ~~~d~Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v-~-r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~  154 (342)
T PLN02214         80 DGCDGVFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKV-K-RVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFC  154 (342)
T ss_pred             hcCCEEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCC-C-EEEEeccceeeeccCCCCCCcccCcccCCChhhc
Confidence            99999999998642   23456788899999999999988753 2 46665543221100       0011000 0  01


Q ss_pred             --CCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          150 --AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       150 --~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                        +...++.++...+++...+++..|++..-++...|+|...
T Consensus       155 ~~p~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~  196 (342)
T PLN02214        155 KNTKNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPL  196 (342)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCC
Confidence              1124566777777787777888899999999888999753

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.89  E-value=1e-08  Score=87.23  Aligned_cols=102  Identities=22%  Similarity=0.380  Sum_probs=69.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhh----h----cc------CCcccEEEe
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD----A----AF------PLLKGVVAT   72 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~----~----~~------~~~~~v~~~   72 (300)
                      ||+|+| +|.+|..++..++..|+       +++|+|.++  +.++.....+.+    .    ..      ....+++.+
T Consensus         1 ~V~ViG-aG~mG~~iA~~~a~~G~-------~V~l~d~~~--~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~   70 (180)
T PF02737_consen    1 KVAVIG-AGTMGRGIAALFARAGY-------EVTLYDRSP--EALERARKRIERLLDRLVRKGRLSQEEADAALARISFT   70 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTS-------EEEEE-SSH--HHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE
T ss_pred             CEEEEc-CCHHHHHHHHHHHhCCC-------cEEEEECCh--HHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc
Confidence            799999 69999999999999886       899999974  333211111111    0    00      124688888


Q ss_pred             CChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           73 TDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        73 ~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      +++.++. +||+||-+.              .++.++.+++.+.+++.+++++  |++||.+.
T Consensus        71 ~dl~~~~-~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~--ilasnTSs  116 (180)
T PF02737_consen   71 TDLEEAV-DADLVIEAI--------------PEDLELKQELFAELDEICPPDT--ILASNTSS  116 (180)
T ss_dssp             SSGGGGC-TESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTS--EEEE--SS
T ss_pred             cCHHHHh-hhheehhhc--------------cccHHHHHHHHHHHHHHhCCCc--eEEecCCC
Confidence            8876655 999999983              3467888999999999998885  77888764

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=98.89  E-value=2.1e-09  Score=97.35  Aligned_cols=172  Identities=20%  Similarity=0.225  Sum_probs=104.5

Q ss_pred             EEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc----c-----CCcccEEEeCChhhh
Q 022227            8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA----F-----PLLKGVVATTDAVEA   78 (300)
Q Consensus         8 V~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~----~-----~~~~~v~~~~~~~~a   78 (300)
                      |.||||+|++|+.++..|+..+-      .+|+++|.++  ..+-....++....    .     +...++.-......+
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p------~~lil~d~~E--~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~   72 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGP------KKLILFDRDE--NKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRI   72 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-------SEEEEEES-H--HHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHH
T ss_pred             CEEEccccHHHHHHHHHHHhcCC------CeEEEeCCCh--hHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHH
Confidence            68999999999999999997642      2799999974  45555555553111    0     112233322335667


Q ss_pred             cC--CCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEec-----CchhhHHHHHHHHCCCCC
Q 022227           79 CT--GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA-----NPANTNALILKEFAPSIP  149 (300)
Q Consensus        79 ~~--~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~s-----NP~~~~~~~~~~~~~~~p  149 (300)
                      ++  +.|+|||+|....-|  .....+.++.|+-..++++++..+++- + ++|.+|     ||.+              
T Consensus        73 ~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v-~-~~v~ISTDKAv~Ptn--------------  136 (293)
T PF02719_consen   73 FEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGV-E-RFVFISTDKAVNPTN--------------  136 (293)
T ss_dssp             TT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT--S-EEEEEEECGCSS--S--------------
T ss_pred             HhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCC-C-EEEEccccccCCCCc--------------
Confidence            78  899999999875433  235577899999999999999999875 3 455554     3443              


Q ss_pred             CCcEEeeehhhHHHHHHHHHHHc---CCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchh
Q 022227          150 AKNITCLTRLDHNRALGQISEKL---NVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVR  211 (300)
Q Consensus       150 ~~~i~~~t~ld~~R~~~~la~~l---~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~  211 (300)
                         +.|.|+.-.+++....+...   +.....||.-+|+|..| |.+|.|.+---    .|.|++
T Consensus       137 ---vmGatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~G-SVip~F~~Qi~----~g~PlT  193 (293)
T PF02719_consen  137 ---VMGATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRG-SVIPLFKKQIK----NGGPLT  193 (293)
T ss_dssp             ---HHHHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTT-SCHHHHHHHHH----TTSSEE
T ss_pred             ---HHHHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCC-cHHHHHHHHHH----cCCcce
Confidence               43555555556555555544   34456677777888665 56777655444    677774

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.86  E-value=1.8e-08  Score=91.90  Aligned_cols=164  Identities=18%  Similarity=0.174  Sum_probs=105.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhh-----hhhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEAL-----NGVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l-----~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      +|.||||+||||++++..|++.|.       +++.+|........     .....|+.+.           ....+.+++
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~d~~~~-----------~~~~~~~~~   63 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAAGH-------DVRGLDRLRDGLDPLLSGVEFVVLDLTDR-----------DLVDELAKG   63 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhCCC-------eEEEEeCCCccccccccccceeeecccch-----------HHHHHHHhc
Confidence            599999999999999999998765       79999975321100     0011122211           134455667


Q ss_pred             C-cEEEEeCCCCCCCCCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH-H----HHHHH-CCCCCCC
Q 022227           82 V-NIAVMVGGFPRKEGMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA-L----ILKEF-APSIPAK  151 (300)
Q Consensus        82 a-DvVi~~ag~~~~~g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~-~----~~~~~-~~~~p~~  151 (300)
                      . |.|||+|+....++..+   .+....|+...+++++++.+.+.  .++|. +++..... .    .+.+. .+..|..
T Consensus        64 ~~d~vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~--~~~v~-~ss~~~~~~~~~~~~~~E~~~~~~p~~  140 (314)
T COG0451          64 VPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGV--KRFVF-ASSVSVVYGDPPPLPIDEDLGPPRPLN  140 (314)
T ss_pred             CCCEEEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCC--CeEEE-eCCCceECCCCCCCCcccccCCCCCCC
Confidence            7 99999998765444432   35788999999999999998432  23444 44432111 0    11111 0111211


Q ss_pred             cEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCce
Q 022227          152 NITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQ  192 (300)
Q Consensus       152 ~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~  192 (300)
                       .++.+++..++.....++..+++..-++...|+|......
T Consensus       141 -~Yg~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~  180 (314)
T COG0451         141 -PYGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKPD  180 (314)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCC
Confidence             4778888888888877777889999999878898665433

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=98.86  E-value=1.1e-08  Score=95.39  Aligned_cols=173  Identities=9%  Similarity=-0.031  Sum_probs=98.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch---hhhhhhhhhhhh---hccC-CcccEEEeCChhhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA---EALNGVKMELVD---AAFP-LLKGVVATTDAVEA   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~---~~l~g~~~dl~~---~~~~-~~~~v~~~~~~~~a   78 (300)
                      +||.||||+||||++++..|+..|.       +|+++|.....   +.+.....+...   .... ...+++-.....++
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~   73 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY-------EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRI   73 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC-------EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHH
Confidence            4899999999999999999998875       78888875321   111111000000   0000 00111111123455


Q ss_pred             cCC--CcEEEEeCCCCCCC-C-CcHHHHHHhhHHHHHHHHHHHhhhcCCC-eEEEEecCchhhHHHH----HHHHCCCCC
Q 022227           79 CTG--VNIAVMVGGFPRKE-G-MERKDVMSKNVSIYKAQASALEQHAAPN-CKVLVVANPANTNALI----LKEFAPSIP  149 (300)
Q Consensus        79 ~~~--aDvVi~~ag~~~~~-g-~~r~dl~~~N~~i~~~i~~~i~~~~~~~-~~viv~sNP~~~~~~~----~~~~~~~~p  149 (300)
                      +++  .|+|||+|+..... . ......+..|+....++++++.+.+-+. .++|.+|.. .+-...    ..+. ....
T Consensus        74 ~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~-~vyg~~~~~~~~E~-~~~~  151 (343)
T TIGR01472        74 IDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTS-ELYGKVQEIPQNET-TPFY  151 (343)
T ss_pred             HHhCCCCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccH-HhhCCCCCCCCCCC-CCCC
Confidence            664  59999999875322 1 1233445678889999999998865322 245555542 211100    0111 1122


Q ss_pred             CCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecC
Q 022227          150 AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN  187 (300)
Q Consensus       150 ~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~  187 (300)
                      +...++.+++..+++...+++.++++....+.+.++|.
T Consensus       152 p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp  189 (343)
T TIGR01472       152 PRSPYAAAKLYAHWITVNYREAYGLFAVNGILFNHESP  189 (343)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCC
Confidence            34567888999888888888888876554444444454

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=98.84  E-value=2.9e-08  Score=92.05  Aligned_cols=172  Identities=14%  Similarity=0.182  Sum_probs=104.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-CCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-~~~~~v~~~~~~~~a~~~a   82 (300)
                      +.++|+||||+|++|++++..|+..+-     ..+|+++|.+.  ........++..... ....++.-..+..++++++
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~-----~~~V~~~~r~~--~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~i   75 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYN-----PKKIIIYSRDE--LKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGV   75 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCC-----CcEEEEEcCCh--hHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcC
Confidence            357899999999999999999987641     01688888653  111111111111000 0011111122355677899


Q ss_pred             cEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehhh
Q 022227           83 NIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD  160 (300)
Q Consensus        83 DvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld  160 (300)
                      |+|||+||....+  ..+..+.+..|+.....+.+.+.+.+. . ++|++|...           +..| ...++.++..
T Consensus        76 D~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~-~-~iV~~SS~~-----------~~~p-~~~Y~~sK~~  141 (324)
T TIGR03589        76 DYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGV-K-RVVALSTDK-----------AANP-INLYGATKLA  141 (324)
T ss_pred             CEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCC-C-EEEEEeCCC-----------CCCC-CCHHHHHHHH
Confidence            9999999874322  234567789999999999999998653 2 566666421           1112 2345666666


Q ss_pred             HHHHHHHHH---HHcCCCCCCeEEEEEecCCCCceeeecc
Q 022227          161 HNRALGQIS---EKLNVQVSDVKNVIIWGNHSSSQYPDVN  197 (300)
Q Consensus       161 ~~R~~~~la---~~l~v~~~~V~~~~V~G~hg~~~~p~~s  197 (300)
                      .+++...++   +..|++...++...|+|..+ +.+|.+.
T Consensus       142 ~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~-~~i~~~~  180 (324)
T TIGR03589       142 SDKLFVAANNISGSKGTRFSVVRYGNVVGSRG-SVVPFFK  180 (324)
T ss_pred             HHHHHHHHHhhccccCcEEEEEeecceeCCCC-CcHHHHH
Confidence            666554433   35678888888888888643 3444443

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=98.83  E-value=2.2e-08  Score=101.53  Aligned_cols=170  Identities=14%  Similarity=0.128  Sum_probs=107.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-cccEEEeCC-hhhhcC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTD-AVEACT   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~-~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-~~~v~~~~~-~~~a~~   80 (300)
                      +.+||+||||+||||++++..|+.. ++       +|+.+|....  .....   +.+..... ..++.-..+ ..++++
T Consensus       314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-------~V~~l~r~~~--~~~~~---~~~~~~~~~~gDl~d~~~~l~~~l~  381 (660)
T PRK08125        314 RRTRVLILGVNGFIGNHLTERLLRDDNY-------EVYGLDIGSD--AISRF---LGHPRFHFVEGDISIHSEWIEYHIK  381 (660)
T ss_pred             cCCEEEEECCCchHHHHHHHHHHhCCCc-------EEEEEeCCch--hhhhh---cCCCceEEEeccccCcHHHHHHHhc
Confidence            4579999999999999999999874 44       7888887531  11100   00000000 011110011 245688


Q ss_pred             CCcEEEEeCCCCC--CCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCC---CC--
Q 022227           81 GVNIAVMVGGFPR--KEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPS---IP--  149 (300)
Q Consensus        81 ~aDvVi~~ag~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~---~p--  149 (300)
                      ++|+|||+|+...  ....+..++...|+....++++++.+++ +  ++|.+|+.. +...    ...+..+-   .|  
T Consensus       382 ~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~--~~V~~SS~~-vyg~~~~~~~~E~~~~~~~~p~~  457 (660)
T PRK08125        382 KCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K--RIIFPSTSE-VYGMCTDKYFDEDTSNLIVGPIN  457 (660)
T ss_pred             CCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C--eEEEEcchh-hcCCCCCCCcCccccccccCCCC
Confidence            9999999998643  1223455678889999999999999875 2  566666532 1100    00110000   01  


Q ss_pred             -CCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          150 -AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       150 -~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                       +...++.+++..+++...+++..+++...++...|+|...
T Consensus       458 ~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~  498 (660)
T PRK08125        458 KQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRL  498 (660)
T ss_pred             CCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCc
Confidence             1236888988888888888888899999999998999753

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.82  E-value=4.9e-08  Score=89.14  Aligned_cols=171  Identities=18%  Similarity=0.208  Sum_probs=102.7

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhh-------hh-hcc------CCc
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL-------VD-AAF------PLL   66 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl-------~~-~~~------~~~   66 (300)
                      |+++..||+|+| +|.+|..++..++..|+       +++|+|.++  +.++.....+       .+ ...      ...
T Consensus         1 ~~~~~~~V~ViG-aG~mG~~iA~~~a~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~   70 (286)
T PRK07819          1 MSDAIQRVGVVG-AGQMGAGIAEVCARAGV-------DVLVFETTE--ELATAGRNRIEKSLERAVSRGKLTERERDAAL   70 (286)
T ss_pred             CCCCccEEEEEc-ccHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHHHHHHHHHHHhcccCChhhHHHHH
Confidence            777777999999 79999999999998875       899999975  3332111111       00 000      123


Q ss_pred             ccEEEeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEecCchhhHHHHHHHHC
Q 022227           67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        67 ~~v~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                      .+++.+++. +++++||+||.+.              .++.++.+++...+++.+ ++++  |++||.+......+....
T Consensus        71 ~~l~~~~~~-~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la~~~  133 (286)
T PRK07819         71 ARLRFTTDL-GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLAAAT  133 (286)
T ss_pred             hCeEeeCCH-HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhc
Confidence            567777776 7799999999983              345677788888999997 6674  667777653322222221


Q ss_pred             --CC--------CCCCc-----E--EeeehhhHHHHHHHHHH-HcCCCCCCeEEEEEecCCCC-ceeeecccee
Q 022227          146 --PS--------IPAKN-----I--TCLTRLDHNRALGQISE-KLNVQVSDVKNVIIWGNHSS-SQYPDVNHAT  200 (300)
Q Consensus       146 --~~--------~p~~~-----i--~~~t~ld~~R~~~~la~-~l~v~~~~V~~~~V~G~hg~-~~~p~~s~a~  200 (300)
                        ++        .|+..     +  +..|.-.+......+.+ .+|..|.-++..  -|...+ -+.|.+..+.
T Consensus       134 ~~~~r~~g~hf~~P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~--pGfi~nRi~~~~~~Ea~  205 (286)
T PRK07819        134 KRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVVRAQDR--SGFVVNALLVPYLLSAI  205 (286)
T ss_pred             CCCccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEecCC--CChHHHHHHHHHHHHHH
Confidence              11        12221     2  22355554433444545 588776555432  254444 4445555444

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=98.82  E-value=2.5e-08  Score=93.14  Aligned_cols=166  Identities=11%  Similarity=0.085  Sum_probs=101.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh-ccC-CcccEE-EeCChhhhcCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFP-LLKGVV-ATTDAVEACTG   81 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~-~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~-~~~-~~~~v~-~~~~~~~a~~~   81 (300)
                      |||+||||+||+|++++..|+.. +.       +|+.+|...  ++..    ++... ... ...++. -.....+++++
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~-------~V~~~~r~~--~~~~----~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   68 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDW-------EVYGMDMQT--DRLG----DLVNHPRMHFFEGDITINKEWIEYHVKK   68 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCC-------eEEEEeCcH--HHHH----HhccCCCeEEEeCCCCCCHHHHHHHHcC
Confidence            68999999999999999999874 33       788888642  2111    11100 000 001111 00123356789


Q ss_pred             CcEEEEeCCCCCC--CCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCC---C---
Q 022227           82 VNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSI---P---  149 (300)
Q Consensus        82 aDvVi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~---p---  149 (300)
                      +|+|||+|+....  ...+.......|+....++++++++..   .++|.+|+.. +...    ...+..+.+   |   
T Consensus        69 ~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~---~~~v~~SS~~-vyg~~~~~~~~ee~~~~~~~~~~~  144 (347)
T PRK11908         69 CDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG---KHLVFPSTSE-VYGMCPDEEFDPEASPLVYGPINK  144 (347)
T ss_pred             CCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC---CeEEEEecce-eeccCCCcCcCccccccccCcCCC
Confidence            9999999875421  223345567788999999999998763   3677666532 1000    000000101   1   


Q ss_pred             CCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          150 AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       150 ~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      +...++.++...+.....++++.+++..-++...|+|.+
T Consensus       145 p~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~  183 (347)
T PRK11908        145 PRWIYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPG  183 (347)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCC
Confidence            122466677777777777778889999999988889964

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=98.80  E-value=4.9e-08  Score=91.41  Aligned_cols=176  Identities=14%  Similarity=0.112  Sum_probs=103.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc-cC-CcccEEEeCChhhhcCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FP-LLKGVVATTDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~-~~-~~~~v~~~~~~~~a~~~   81 (300)
                      ..+||.||||+||||++++..|++.|.       +|++++.+.  +.......++.... .. ...++.-.....+++++
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~   79 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGY-------TVHATLRDP--AKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKG   79 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcC
Confidence            358999999999999999999998875       677776642  22211111111100 00 00111111124566788


Q ss_pred             CcEEEEeCCCCCCC---C-CcHHH-----HHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH--------HHHHH
Q 022227           82 VNIAVMVGGFPRKE---G-MERKD-----VMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL--------ILKEF  144 (300)
Q Consensus        82 aDvVi~~ag~~~~~---g-~~r~d-----l~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~--------~~~~~  144 (300)
                      +|+|||+|+.....   . .+..+     .+..|+....++++.+.+... -.++|++|+.......        .+.+.
T Consensus        80 ~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~-~~~~v~~SS~~vyg~~~~~~~~~~~~~E~  158 (353)
T PLN02896         80 CDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKT-VKRVVFTSSISTLTAKDSNGRWRAVVDET  158 (353)
T ss_pred             CCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCC-ccEEEEEechhhccccccCCCCCCccCcc
Confidence            99999999864321   1 12222     334456888999998887631 1256666653211100        00000


Q ss_pred             C--C------CCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          145 A--P------SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       145 ~--~------~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      .  +      ..++...++.+++..+++...+++..+++..-++...|+|.+-
T Consensus       159 ~~~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~  211 (353)
T PLN02896        159 CQTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFL  211 (353)
T ss_pred             cCCcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCc
Confidence            0  0      0011125788888888888888988999999999888899754

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=98.79  E-value=6e-08  Score=88.82  Aligned_cols=163  Identities=17%  Similarity=0.201  Sum_probs=98.3

Q ss_pred             EEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhh-hhhhhhhhhhccCCcccEEEeCC-hhhhc-----C
Q 022227            8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEAL-NGVKMELVDAAFPLLKGVVATTD-AVEAC-----T   80 (300)
Q Consensus         8 V~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l-~g~~~dl~~~~~~~~~~v~~~~~-~~~a~-----~   80 (300)
                      |.||||+||||++++..|+..|. .     .+.++|........ .-...|+.|..        ...+ ..+++     .
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~-~-----~v~~~~~~~~~~~~~~~~~~~~~d~~--------~~~~~~~~~~~~~~~~   67 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGI-T-----DILVVDNLKDGTKFVNLVDLDIADYM--------DKEDFLAQIMAGDDFG   67 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCC-c-----eEEEecCCCcchHHHhhhhhhhhhhh--------hHHHHHHHHhcccccC
Confidence            78999999999999999998764 1     46677764311110 10112332211        0001 12222     3


Q ss_pred             CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCCcEEee
Q 022227           81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCL  156 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~~i~~~  156 (300)
                      ++|+|||+|+.+.....+.....+.|+....++++.+.+.+   +++|..|+.. +...    ...+. ....+...++.
T Consensus        68 ~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~---~~~i~~SS~~-vyg~~~~~~~~E~-~~~~p~~~Y~~  142 (308)
T PRK11150         68 DIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE---IPFLYASSAA-TYGGRTDDFIEER-EYEKPLNVYGY  142 (308)
T ss_pred             CccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcC---CcEEEEcchH-HhCcCCCCCCccC-CCCCCCCHHHH
Confidence            69999999986543333445578889999999999998863   4566655432 1100    00010 00112234667


Q ss_pred             ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       157 t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ++...+++...+++..+++...++...|+|...
T Consensus       143 sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~  175 (308)
T PRK11150        143 SKFLFDEYVRQILPEANSQICGFRYFNVYGPRE  175 (308)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEeeeeecCCCC
Confidence            777777776667767788888889888899654

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=98.78  E-value=1.9e-08  Score=91.96  Aligned_cols=173  Identities=21%  Similarity=0.208  Sum_probs=113.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh---hhhhhh-hhhc----------cCCcccEE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN---GVKMEL-VDAA----------FPLLKGVV   70 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~---g~~~dl-~~~~----------~~~~~~v~   70 (300)
                      -+||+|+| +|.+|+.+|..++..|+       +|+|+|+++  +.++   ...... ....          .....+++
T Consensus         3 i~kv~ViG-aG~MG~gIA~~~A~~G~-------~V~l~D~~~--~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~   72 (307)
T COG1250           3 IKKVAVIG-AGVMGAGIAAVFALAGY-------DVVLKDISP--EALERALAYIEKNLEKLVEKGKLTEEEADAALARIT   72 (307)
T ss_pred             ccEEEEEc-ccchhHHHHHHHhhcCC-------ceEEEeCCH--HHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhcc
Confidence            46999999 79999999999998665       799999974  2222   111111 1000          01234566


Q ss_pred             EeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh-hHHHHHHHHC-CC-
Q 022227           71 ATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN-TNALILKEFA-PS-  147 (300)
Q Consensus        71 ~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~-~~~~~~~~~~-~~-  147 (300)
                      .++++ +++++||+||-+.              -+|.++.+++.+.+.++++|++  |+.||.+. .++.++.... |. 
T Consensus        73 ~~~~~-~~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~a--IlASNTSsl~it~ia~~~~rper  135 (307)
T COG1250          73 PTTDL-AALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDA--ILASNTSSLSITELAEALKRPER  135 (307)
T ss_pred             ccCch-hHhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCc--EEeeccCCCCHHHHHHHhCCchh
Confidence            56554 5899999999873              4678889999999999998875  88999875 4444443321 11 


Q ss_pred             -------CCCCc------E-EeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC-ceeeeccceeeeccCC
Q 022227          148 -------IPAKN------I-TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHATVNTAAG  206 (300)
Q Consensus       148 -------~p~~~------i-~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~-~~~p~~s~a~v~~~~~  206 (300)
                             .|+..      + +-.|.-++......+++++|..|..++..  -|+..+ -..|.|..|.....++
T Consensus       136 ~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~--pGFi~NRil~~~~~eA~~l~~eG  207 (307)
T COG1250         136 FIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDV--PGFIVNRLLAALLNEAIRLLEEG  207 (307)
T ss_pred             EEEEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCC--CceehHhHHHHHHHHHHHHHHhC
Confidence                   13321      3 22477778888888999999666322322  466666 4667777776533333

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=98.77  E-value=2.7e-08  Score=92.98  Aligned_cols=173  Identities=12%  Similarity=0.056  Sum_probs=102.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh-ccC-CcccEEEeCChhhhcCC-
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFP-LLKGVVATTDAVEACTG-   81 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~-~~~-~~~~v~~~~~~~~a~~~-   81 (300)
                      .++|.|+||+|++|++++..|++.|.       +|+.+|.+..  ........+... ... ...++.-..+..+.+++ 
T Consensus         4 ~k~ilItGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   74 (349)
T TIGR02622         4 GKKVLVTGHTGFKGSWLSLWLLELGA-------EVYGYSLDPP--TSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEF   74 (349)
T ss_pred             CCEEEEECCCChhHHHHHHHHHHCCC-------EEEEEeCCCc--cchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhc
Confidence            47899999999999999999998774       6888887532  111110011100 000 01111111123344554 


Q ss_pred             -CcEEEEeCCCCCC--CCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH----HHHHHHCCCCCCCcEE
Q 022227           82 -VNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA----LILKEFAPSIPAKNIT  154 (300)
Q Consensus        82 -aDvVi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~----~~~~~~~~~~p~~~i~  154 (300)
                       .|+|||+|+.+..  ...+....+..|+....++++.+.+.+.. .++|++|+..-.-.    .-..+. ...++...+
T Consensus        75 ~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~-~~iv~~SS~~vyg~~~~~~~~~e~-~~~~p~~~Y  152 (349)
T TIGR02622        75 KPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSV-KAVVNVTSDKCYRNDEWVWGYRET-DPLGGHDPY  152 (349)
T ss_pred             CCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCC-CEEEEEechhhhCCCCCCCCCccC-CCCCCCCcc
Confidence             5999999985422  12234566788999999999998876421 25676665321000    000011 112223467


Q ss_pred             eeehhhHHHHHHHHHHHc-------CCCCCCeEEEEEecCC
Q 022227          155 CLTRLDHNRALGQISEKL-------NVQVSDVKNVIIWGNH  188 (300)
Q Consensus       155 ~~t~ld~~R~~~~la~~l-------~v~~~~V~~~~V~G~h  188 (300)
                      +.++...+++...+++.+       +++...++...|+|..
T Consensus       153 ~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~  193 (349)
T TIGR02622       153 SSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGG  193 (349)
T ss_pred             hhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCC
Confidence            778888877777777665       7778888888888864

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=98.76  E-value=5.5e-08  Score=90.87  Aligned_cols=175  Identities=11%  Similarity=0.075  Sum_probs=104.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh-ccC-CcccEEEeCChhhhcC--C
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFP-LLKGVVATTDAVEACT--G   81 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~-~~~-~~~~v~~~~~~~~a~~--~   81 (300)
                      +||.||||+||||++++..|+..|.-      .++++|..+....+.... .+... ... ...++.-..+..++++  +
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~------~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   74 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSD------AVVVVDKLTYAGNLMSLA-PVAQSERFAFEKVDICDRAELARVFTEHQ   74 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCC------EEEEEecCccccchhhhh-hcccCCceEEEECCCcChHHHHHHHhhcC
Confidence            58999999999999999999987641      356667542111111000 00000 000 0011111123445565  3


Q ss_pred             CcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhc------CCCe-EEEEecCchhhHHH------HHHHHCC
Q 022227           82 VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHA------APNC-KVLVVANPANTNAL------ILKEFAP  146 (300)
Q Consensus        82 aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~------~~~~-~viv~sNP~~~~~~------~~~~~~~  146 (300)
                      +|+|||+||.....  .....+....|+.....+++.+.++.      .+.+ ++|.+|... +...      .+.+. .
T Consensus        75 ~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~E~-~  152 (355)
T PRK10217         75 PDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDE-VYGDLHSTDDFFTET-T  152 (355)
T ss_pred             CCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchh-hcCCCCCCCCCcCCC-C
Confidence            89999999875321  12345677889999999999997641      1122 456555432 1100      00111 1


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ...+...++.+++..+++...+++..+++..-++...|+|.+.
T Consensus       153 ~~~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~  195 (355)
T PRK10217        153 PYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYH  195 (355)
T ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCC
Confidence            1122345788888888888888899999998899888899764

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=98.75  E-value=5.7e-08  Score=90.65  Aligned_cols=175  Identities=11%  Similarity=0.075  Sum_probs=102.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc-cC-CcccEEEeCChhhhcC--C
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FP-LLKGVVATTDAVEACT--G   81 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~-~~-~~~~v~~~~~~~~a~~--~   81 (300)
                      |||.||||+|+||++++..|+..|.-      .++.+|......... ...++.... .. ...++.-..+..++++  +
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~~------~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   73 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQD------SVVNVDKLTYAGNLE-SLADVSDSERYVFEHADICDRAELDRIFAQHQ   73 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCCC------eEEEecCCCccchHH-HHHhcccCCceEEEEecCCCHHHHHHHHHhcC
Confidence            48999999999999999999987631      355566431101111 000110000 00 0011111113344554  4


Q ss_pred             CcEEEEeCCCCCC--CCCcHHHHHHhhHHHHHHHHHHHhhhc------CCCe-EEEEecCchhhHHH-------------
Q 022227           82 VNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHA------APNC-KVLVVANPANTNAL-------------  139 (300)
Q Consensus        82 aDvVi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~------~~~~-~viv~sNP~~~~~~-------------  139 (300)
                      +|+|||+|+....  ......+....|+....++++.+.++.      .+.+ ++|.+|... +...             
T Consensus        74 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~~~~~  152 (352)
T PRK10084         74 PDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDE-VYGDLPHPDEVENSEEL  152 (352)
T ss_pred             CCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchh-hcCCCCccccccccccC
Confidence            8999999986532  122345678899999999999998751      0112 456565432 1110             


Q ss_pred             -HHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          140 -ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       140 -~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                       .+.+. ....+...++.++...+++...+++.++++...++...|+|.+.
T Consensus       153 ~~~~E~-~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~  202 (352)
T PRK10084        153 PLFTET-TAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYH  202 (352)
T ss_pred             CCcccc-CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCc
Confidence             00111 11122346888899888888888888999888888888899763

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=98.74  E-value=3.7e-08  Score=90.24  Aligned_cols=157  Identities=15%  Similarity=0.122  Sum_probs=93.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC--CCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--GVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~--~aD   83 (300)
                      |||.||||+||+|++++..|+..|        +++.+|...  ..   ...|+.+..           ...++++  ++|
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g--------~V~~~~~~~--~~---~~~Dl~d~~-----------~~~~~~~~~~~D   56 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG--------NLIALDVHS--TD---YCGDFSNPE-----------GVAETVRKIRPD   56 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC--------CEEEecccc--cc---ccCCCCCHH-----------HHHHHHHhcCCC
Confidence            489999999999999999998764        366677642  11   123554432           2344555  589


Q ss_pred             EEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh--HHH-HHHHHCCCCCCCcEEeeeh
Q 022227           84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT--NAL-ILKEFAPSIPAKNITCLTR  158 (300)
Q Consensus        84 vVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~--~~~-~~~~~~~~~p~~~i~~~t~  158 (300)
                      +|||+|+.....  ..+.......|+....++++.+++.+   +++|.+|...-.  ... -..+. ....+.+.++.++
T Consensus        57 ~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g---~~~v~~Ss~~Vy~~~~~~p~~E~-~~~~P~~~Yg~sK  132 (299)
T PRK09987         57 VIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG---AWVVHYSTDYVFPGTGDIPWQET-DATAPLNVYGETK  132 (299)
T ss_pred             EEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEccceEECCCCCCCcCCC-CCCCCCCHHHHHH
Confidence            999999865321  12334445789999999999998874   466666643200  000 00010 0111234567777


Q ss_pred             hhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceee
Q 022227          159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP  194 (300)
Q Consensus       159 ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p  194 (300)
                      +..+++...    +..+..-+|...|+|..+.+.++
T Consensus       133 ~~~E~~~~~----~~~~~~ilR~~~vyGp~~~~~~~  164 (299)
T PRK09987        133 LAGEKALQE----HCAKHLIFRTSWVYAGKGNNFAK  164 (299)
T ss_pred             HHHHHHHHH----hCCCEEEEecceecCCCCCCHHH
Confidence            766554332    23344566777788865554444

>PLN02240 UDP-glucose 4-epimerase

Probab=98.72  E-value=6.5e-08  Score=90.15  Aligned_cols=177  Identities=15%  Similarity=0.060  Sum_probs=98.4

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhh-hhhhhhhhhhccC----CcccEEEeCCh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEAL-NGVKMELVDAAFP----LLKGVVATTDA   75 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l-~g~~~dl~~~~~~----~~~~v~~~~~~   75 (300)
                      |++..+||+|+||+|++|++++..|+..|.       +|+++|........ .....++......    ...++.-..+.
T Consensus         1 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l   73 (352)
T PLN02240          1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGY-------KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEAL   73 (352)
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHH
Confidence            777788999999999999999999998764       78888753210000 0000111000000    00111111123


Q ss_pred             hhhcC--CCcEEEEeCCCCCC-CC-CcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH----HHHHCCC
Q 022227           76 VEACT--GVNIAVMVGGFPRK-EG-MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEFAPS  147 (300)
Q Consensus        76 ~~a~~--~aDvVi~~ag~~~~-~g-~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~----~~~~~~~  147 (300)
                      .++++  ++|+||++|+.... .. ....+.+..|+.....+++.+.+... . ++|.+|+ ..+....    +.+. ..
T Consensus        74 ~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~-~~v~~Ss-~~vyg~~~~~~~~E~-~~  149 (352)
T PLN02240         74 EKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGC-K-KLVFSSS-ATVYGQPEEVPCTEE-FP  149 (352)
T ss_pred             HHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCC-C-EEEEEcc-HHHhCCCCCCCCCCC-CC
Confidence            33343  68999999986431 11 23456788999999999999887643 2 4666664 3211000    0000 01


Q ss_pred             CCCCcEEeeehhhHHHHHHHHHHH-cCCCCCCeEEEEEecCC
Q 022227          148 IPAKNITCLTRLDHNRALGQISEK-LNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       148 ~p~~~i~~~t~ld~~R~~~~la~~-l~v~~~~V~~~~V~G~h  188 (300)
                      ..+...++.++...+++...+++. .++...-++.+.|+|.|
T Consensus       150 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~  191 (352)
T PLN02240        150 LSATNPYGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAH  191 (352)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCC
Confidence            111223556666666666555543 46666666766666754

>PLN02686 cinnamoyl-CoA reductase

Probab=98.70  E-value=4.2e-08  Score=92.59  Aligned_cols=172  Identities=15%  Similarity=0.149  Sum_probs=102.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhh---------hccCCcccEEEeCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD---------AAFPLLKGVVATTD   74 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~---------~~~~~~~~v~~~~~   74 (300)
                      +.++|+||||+||+|++++..|++.|+       +|+++..+.  +.++.. .++..         .......++.-..+
T Consensus        52 ~~k~VLVTGatGfIG~~lv~~L~~~G~-------~V~~~~r~~--~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~  121 (367)
T PLN02686         52 EARLVCVTGGVSFLGLAIVDRLLRHGY-------SVRIAVDTQ--EDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPES  121 (367)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHH-HHHhhhccccccCCceEEEEcCCCCHHH
Confidence            457999999999999999999998875       676654432  222111 11110         00000112211223


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCCC--cHHHHHHhhHHHHHHHHHHHhhhcCCCe-EEEEecCchhhHHH----------HH
Q 022227           75 AVEACTGVNIAVMVGGFPRKEGM--ERKDVMSKNVSIYKAQASALEQHAAPNC-KVLVVANPANTNAL----------IL  141 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~g~--~r~dl~~~N~~i~~~i~~~i~~~~~~~~-~viv~sNP~~~~~~----------~~  141 (300)
                      ..++++++|.|||+|+.....+.  ....+...|+..++++++++.+..  ++ ++|.+|... ...+          .+
T Consensus       122 l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~--~v~r~V~~SS~~-~~vyg~~~~~~~~~~i  198 (367)
T PLN02686        122 LHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTE--SVRKCVFTSSLL-ACVWRQNYPHDLPPVI  198 (367)
T ss_pred             HHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcC--CccEEEEeccHH-HhcccccCCCCCCccc
Confidence            45678899999999876432221  123456678999999999988753  23 455555432 1111          00


Q ss_pred             HHHCC---CCC--CCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          142 KEFAP---SIP--AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       142 ~~~~~---~~p--~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      .+..+   ..+  +...++.+++..+++...+++..|++..-++...|+|..
T Consensus       199 ~E~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~  250 (367)
T PLN02686        199 DEESWSDESFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPG  250 (367)
T ss_pred             CCCCCCChhhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCC
Confidence            00000   001  112466778888888777888889999899888889974

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=98.68  E-value=9.1e-08  Score=87.89  Aligned_cols=168  Identities=17%  Similarity=0.139  Sum_probs=100.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-CcccEEEeCChhhhcCCCcE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-~~~~v~~~~~~~~a~~~aDv   84 (300)
                      |||.|+||+|++|++++..|+..|.       +++.+|.++.  ....    +.+.... ...++.-..+..++++++|+
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~~----~~~~~~~~~~~D~~~~~~l~~~~~~~d~   67 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE-------EVRVLVRPTS--DRRN----LEGLDVEIVEGDLRDPASLRKAVAGCRA   67 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC-------EEEEEEecCc--cccc----cccCCceEEEeeCCCHHHHHHHHhCCCE
Confidence            4899999999999999999998774       7888887542  1110    1100000 00111111245667889999


Q ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCC--cEEeeeh
Q 022227           85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAK--NITCLTR  158 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~--~i~~~t~  158 (300)
                      ||++|+.......+..+....|+.....+++.+.+.+. . ++|+.|+....-..    ...+..+..|..  ..++.++
T Consensus        68 vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~-~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~~~~Y~~sK  145 (328)
T TIGR03466        68 LFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAGV-E-RVVYTSSVATLGVRGDGTPADETTPSSLDDMIGHYKRSK  145 (328)
T ss_pred             EEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhCC-C-eEEEEechhhcCcCCCCCCcCccCCCCcccccChHHHHH
Confidence            99998754333345566788899999999999887643 2 56666653211000    000000001111  1244556


Q ss_pred             hhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          159 LDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       159 ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      +-.+++...+++..+++..-++...++|.+
T Consensus       146 ~~~e~~~~~~~~~~~~~~~ilR~~~~~G~~  175 (328)
T TIGR03466       146 FLAEQAALEMAAEKGLPVVIVNPSTPIGPR  175 (328)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccCCCC
Confidence            666677666777778888788777777754

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.67  E-value=1.4e-07  Score=91.37  Aligned_cols=176  Identities=19%  Similarity=0.207  Sum_probs=114.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-----CCcccEEEeCChhhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-----PLLKGVVATTDAVEA   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-----~~~~~v~~~~~~~~a   78 (300)
                      +.++|.||||+|++|+.+...++..+      +.+++++|.++  -++.....++.+...     +...++.-......+
T Consensus       249 ~gK~vLVTGagGSiGsel~~qil~~~------p~~i~l~~~~E--~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~  320 (588)
T COG1086         249 TGKTVLVTGGGGSIGSELCRQILKFN------PKEIILFSRDE--YKLYLIDMELREKFPELKLRFYIGDVRDRDRVERA  320 (588)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHhcC------CCEEEEecCch--HHHHHHHHHHHhhCCCcceEEEecccccHHHHHHH
Confidence            34689999999999999999998763      33899999975  344444555554211     122333333346778


Q ss_pred             cCC--CcEEEEeCCCCCCCCC--cHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEec-----CchhhHHHHHHHHCCCCC
Q 022227           79 CTG--VNIAVMVGGFPRKEGM--ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA-----NPANTNALILKEFAPSIP  149 (300)
Q Consensus        79 ~~~--aDvVi~~ag~~~~~g~--~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~s-----NP~~~~~~~~~~~~~~~p  149 (300)
                      +++  .|+|+|+|....-|-+  +..+-+..|+-..++++++..+++-+  +++.+|     ||.++|            
T Consensus       321 ~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~--~~V~iSTDKAV~PtNvm------------  386 (588)
T COG1086         321 MEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVK--KFVLISTDKAVNPTNVM------------  386 (588)
T ss_pred             HhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCC--EEEEEecCcccCCchHh------------
Confidence            888  9999999988766644  45677899999999999999998753  345444     444433            


Q ss_pred             CCcEEeeehhhHHHHHHHHHHHcC---CCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchh
Q 022227          150 AKNITCLTRLDHNRALGQISEKLN---VQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVR  211 (300)
Q Consensus       150 ~~~i~~~t~ld~~R~~~~la~~l~---v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~  211 (300)
                           |.|+.-.+.+-...+++.+   ....-||.=+|+|.-| |.+|+|.+---    .|.|++
T Consensus       387 -----GaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrG-SViPlFk~QI~----~GgplT  441 (588)
T COG1086         387 -----GATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRG-SVIPLFKKQIA----EGGPLT  441 (588)
T ss_pred             -----hHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCCC-CCHHHHHHHHH----cCCCcc
Confidence                 4444333333333333222   3334566556777654 67887765444    566764

>PLN02583 cinnamoyl-CoA reductase

Probab=98.67  E-value=1.8e-07  Score=85.68  Aligned_cols=178  Identities=12%  Similarity=0.059  Sum_probs=102.9

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc--c-CCcccEEEeCChhhh
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--F-PLLKGVVATTDAVEA   78 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~--~-~~~~~v~~~~~~~~a   78 (300)
                      +.+.++|+||||+|++|++++..|+++|+       +|++++.+.+...+.....++....  . ....+++-..+..++
T Consensus         3 ~~~~k~vlVTGatG~IG~~lv~~Ll~~G~-------~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~   75 (297)
T PLN02583          3 DESSKSVCVMDASGYVGFWLVKRLLSRGY-------TVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDA   75 (297)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhCCC-------EEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHH
Confidence            34557899999999999999999998875       6777765321122111111111000  0 001112112234678


Q ss_pred             cCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCC--CC-------
Q 022227           79 CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS--IP-------  149 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~--~p-------  149 (300)
                      ++++|.|+++++.+........+++..|+.....+.+++.+.... .++|++|+-.... +.-......  ++       
T Consensus        76 l~~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v-~riV~~SS~~a~~-~~~~~~~~~~~~~E~~~~~~  153 (297)
T PLN02583         76 LKGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTI-EKVVFTSSLTAVI-WRDDNISTQKDVDERSWSDQ  153 (297)
T ss_pred             HcCCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCc-cEEEEecchHhee-cccccCCCCCCCCcccCCCH
Confidence            999999999876543221223567889999999999999876311 2455555432211 000000000  00       


Q ss_pred             -----CCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          150 -----AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       150 -----~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                           ....++.++...+++...+++..|++...++...|+|..
T Consensus       154 ~~~~~~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~  197 (297)
T PLN02583        154 NFCRKFKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPS  197 (297)
T ss_pred             HHHhhcccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCC
Confidence                 001355667777777666666678888888877788864

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.67  E-value=1.1e-07  Score=97.15  Aligned_cols=166  Identities=19%  Similarity=0.199  Sum_probs=112.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh-h--hhh-hh----hhcc------CCcccEEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG-V--KME-LV----DAAF------PLLKGVVA   71 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g-~--~~d-l~----~~~~------~~~~~v~~   71 (300)
                      .||+|+| +|.+|..++..++..|+       +|+|+|.++  +.++. .  ... +.    ....      ....+++.
T Consensus       314 ~~v~ViG-aG~mG~gIA~~~a~~G~-------~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~  383 (715)
T PRK11730        314 KQAAVLG-AGIMGGGIAYQSASKGV-------PVIMKDINQ--KALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP  383 (715)
T ss_pred             ceEEEEC-CchhHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence            5899999 79999999999998886       899999974  33321 1  111 10    0000      12357777


Q ss_pred             eCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh-hHHHHHHHHC-CC--
Q 022227           72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN-TNALILKEFA-PS--  147 (300)
Q Consensus        72 ~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~-~~~~~~~~~~-~~--  147 (300)
                      ++++ +++++||+||-+.              .++.++.+++...+++++++++  |++||.+. .++.++.... +.  
T Consensus       384 ~~~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~la~~~~~p~r~  446 (715)
T PRK11730        384 TLDY-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDT--ILASNTSTISISLLAKALKRPENF  446 (715)
T ss_pred             eCCH-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHHHhhcCCCccE
Confidence            7776 7799999999973              4567888999999999998874  77899876 4445544321 11  


Q ss_pred             ------CCCCc-----E--EeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC-ceeeecccee
Q 022227          148 ------IPAKN-----I--TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHAT  200 (300)
Q Consensus       148 ------~p~~~-----i--~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~-~~~p~~s~a~  200 (300)
                            .|+..     |  +..|.-++......+++.+|..|.-|+..  -|..++ -++|+++.+.
T Consensus       447 ~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~--pGfv~nRi~~~~~~ea~  511 (715)
T PRK11730        447 CGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDC--PGFFVNRVLFPYFAGFS  511 (715)
T ss_pred             EEEecCCcccccceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCc--CchhHHHHHHHHHHHHH
Confidence                  13321     2  22366666666667789999999888644  487776 4566655554

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=98.67  E-value=1.1e-07  Score=96.67  Aligned_cols=178  Identities=13%  Similarity=0.120  Sum_probs=103.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh-ccC-CcccEEEeCChhhhc--
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFP-LLKGVVATTDAVEAC--   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~-~~~-~~~~v~~~~~~~~a~--   79 (300)
                      +++||+||||+||||++++..|++.+.     ..+|+.+|.....+.+.... ..... ... ...++.-.......+  
T Consensus         5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~-----~~~V~~~d~~~~~~~~~~l~-~~~~~~~v~~~~~Dl~d~~~~~~~~~~   78 (668)
T PLN02260          5 EPKNILITGAAGFIASHVANRLIRNYP-----DYKIVVLDKLDYCSNLKNLN-PSKSSPNFKFVKGDIASADLVNYLLIT   78 (668)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHhCC-----CCEEEEEeCCCccchhhhhh-hcccCCCeEEEECCCCChHHHHHHHhh
Confidence            468999999999999999999997631     12688888632111111000 00000 000 000110000111222  


Q ss_pred             CCCcEEEEeCCCCCCCC--CcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHH------HHCCCCCCC
Q 022227           80 TGVNIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK------EFAPSIPAK  151 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~------~~~~~~p~~  151 (300)
                      .++|+|||+|+......  .+..+....|+.....+++.+++.+. -.++|.+|. ..+......      .......+.
T Consensus        79 ~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~-vkr~I~~SS-~~vyg~~~~~~~~~~~E~~~~~p~  156 (668)
T PLN02260         79 EGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQ-IRRFIHVST-DEVYGETDEDADVGNHEASQLLPT  156 (668)
T ss_pred             cCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEcc-hHHhCCCccccccCccccCCCCCC
Confidence            68999999998754221  23346678899999999999988752 125666654 221100000      000011123


Q ss_pred             cEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          152 NITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       152 ~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ..++.+++..+++...+++..+++..-++...|+|.+.
T Consensus       157 ~~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~  194 (668)
T PLN02260        157 NPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQ  194 (668)
T ss_pred             CCcHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCC
Confidence            45778888888888777888899888888888899764

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=98.67  E-value=2.9e-07  Score=83.93  Aligned_cols=174  Identities=14%  Similarity=0.063  Sum_probs=102.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc-c-CCcccEEEeCChhhhcCC--C
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-F-PLLKGVVATTDAVEACTG--V   82 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~-~-~~~~~v~~~~~~~~a~~~--a   82 (300)
                      ||.||||+|++|++++..|+..+.     ..+++++|........+ ...++.... . ....++.-..+..+++++  +
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~-----~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   74 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHP-----DAEVIVLDKLTYAGNLE-NLADLEDNPRYRFVKGDIGDRELVSRLFTEHQP   74 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCC-----CCEEEEecCCCcchhhh-hhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCC
Confidence            589999999999999999987641     12678887532111111 001111100 0 000111111234556666  8


Q ss_pred             cEEEEeCCCCCC--CCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh--HH--HHHHHHCCCCCCCcEEee
Q 022227           83 NIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT--NA--LILKEFAPSIPAKNITCL  156 (300)
Q Consensus        83 DvVi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~--~~--~~~~~~~~~~p~~~i~~~  156 (300)
                      |+||++|+....  ........+..|+.....+++.+.+... +.+++.+|...-.  ..  ....+. ....+...++.
T Consensus        75 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~i~~Ss~~v~g~~~~~~~~~e~-~~~~~~~~Y~~  152 (317)
T TIGR01181        75 DAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWH-EFRFHHISTDEVYGDLEKGDAFTET-TPLAPSSPYSA  152 (317)
T ss_pred             CEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCC-CceEEEeeccceeCCCCCCCCcCCC-CCCCCCCchHH
Confidence            999999986431  1223455678899999999999988643 3466666542100  00  000111 11222345777


Q ss_pred             ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       157 t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      ++...+++...+++..+++..-++...|+|..
T Consensus       153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~  184 (317)
T TIGR01181       153 SKAASDHLVRAYHRTYGLPALITRCSNNYGPY  184 (317)
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence            78888887777788889988888888888854

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.64  E-value=1.5e-07  Score=95.86  Aligned_cols=167  Identities=17%  Similarity=0.205  Sum_probs=111.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHh-cccCCCCCCeEEEEEecCCchhhhhhh---hh-hhhhhc----c------CCcccE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGV---KM-ELVDAA----F------PLLKGV   69 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~-~~~~~~~~~~~l~L~D~~~~~~~l~g~---~~-dl~~~~----~------~~~~~v   69 (300)
                      ..||+|+| +|.+|+.++..++. .|+       +|+|+|.++  +.++.-   .. .+....    .      ....++
T Consensus       304 i~~v~ViG-aG~mG~~iA~~~a~~~G~-------~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i  373 (699)
T TIGR02440       304 IKKVGILG-GGLMGGGIASVTATKAGI-------PVRIKDINP--QGINNALKYAWKLLDKGVKRRHMTPAERDNQMALI  373 (699)
T ss_pred             ccEEEEEC-CcHHHHHHHHHHHHHcCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCe
Confidence            35899999 79999999998874 675       899999974  333211   11 111110    0      013577


Q ss_pred             EEeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh-hHHHHHHHHC-CC
Q 022227           70 VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN-TNALILKEFA-PS  147 (300)
Q Consensus        70 ~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~-~~~~~~~~~~-~~  147 (300)
                      +.++++ ++++|||+||-+.              .++.++.+++...++++++++  .|++||.+. .++.++.... ++
T Consensus       374 ~~~~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~--~ilasnTS~l~i~~la~~~~~p~  436 (699)
T TIGR02440       374 TGTTDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAH--TIFASNTSSLPIGQIAAAASRPE  436 (699)
T ss_pred             EEeCCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCC--cEEEeCCCCCCHHHHHHhcCCcc
Confidence            788776 6899999999973              356788899999999999877  477899876 4444443321 11


Q ss_pred             --------CCCCc-----E--EeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC-ceeeecccee
Q 022227          148 --------IPAKN-----I--TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHAT  200 (300)
Q Consensus       148 --------~p~~~-----i--~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~-~~~p~~s~a~  200 (300)
                              .|+..     |  +..|.-++......+++.+|..|.-|+..  -|...+ -+.+.+..+.
T Consensus       437 r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~--pGfi~nRl~~~~~~Ea~  503 (699)
T TIGR02440       437 NVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADK--AGFYVNRILAPYMNEAA  503 (699)
T ss_pred             cEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccc--cchHHHHHHHHHHHHHH
Confidence                    13321     2  22466666666677888999999888653  477776 5666666664

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.64  E-value=1.5e-07  Score=96.00  Aligned_cols=168  Identities=19%  Similarity=0.236  Sum_probs=114.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh-h--hhhhhhhhc-----c------CCcccEE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN-G--VKMELVDAA-----F------PLLKGVV   70 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~-g--~~~dl~~~~-----~------~~~~~v~   70 (300)
                      ..||+|+| +|.+|..++..++..|+       +|+|+|.++  +.++ +  ...+..+..     .      ....+++
T Consensus       313 i~~v~ViG-aG~mG~gIA~~~a~~G~-------~V~l~d~~~--~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  382 (714)
T TIGR02437       313 VKQAAVLG-AGIMGGGIAYQSASKGT-------PIVMKDINQ--HSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGIT  382 (714)
T ss_pred             cceEEEEC-CchHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE
Confidence            36899999 79999999999998886       899999974  3332 1  111111100     0      1135777


Q ss_pred             EeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh-hHHHHHHHHC-CC-
Q 022227           71 ATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN-TNALILKEFA-PS-  147 (300)
Q Consensus        71 ~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~-~~~~~~~~~~-~~-  147 (300)
                      .++++ +++++||+||.+.              -++.++.+++...+++.++|++  |++||.+. .++.++.... |. 
T Consensus       383 ~~~~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasnTS~l~i~~ia~~~~~p~r  445 (714)
T TIGR02437       383 PTLSY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDA--ILASNTSTISISLLAKALKRPEN  445 (714)
T ss_pred             EeCCH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCccc
Confidence            77775 7799999999983              3567888999999999998875  78899876 3444443321 11 


Q ss_pred             -------CCCCc-----E--EeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC-ceeeeccceee
Q 022227          148 -------IPAKN-----I--TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHATV  201 (300)
Q Consensus       148 -------~p~~~-----i--~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~-~~~p~~s~a~v  201 (300)
                             .|++.     |  +..|.-++......+++.+|..|.-|+..  -|..++ -++|.+..+.-
T Consensus       446 ~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~--pGfi~NRl~~~~~~ea~~  512 (714)
T TIGR02437       446 FCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTPIVVNDC--PGFFVNRVLFPYFGGFSK  512 (714)
T ss_pred             EEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCc--ccchHHHHHHHHHHHHHH
Confidence                   13321     2  22466777666777889999999888643  588887 56666666643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.64  E-value=1.3e-07  Score=96.76  Aligned_cols=168  Identities=17%  Similarity=0.182  Sum_probs=113.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh---hhhhhhhhc-----c------CCcccEE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG---VKMELVDAA-----F------PLLKGVV   70 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g---~~~dl~~~~-----~------~~~~~v~   70 (300)
                      ..||+|+| +|.+|+.++..++..|+       +|+|+|.++  +.++.   ...+..+..     .      ....+++
T Consensus       335 i~~v~ViG-aG~MG~gIA~~~a~~G~-------~V~l~d~~~--~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~  404 (737)
T TIGR02441       335 VKTLAVLG-AGLMGAGIAQVSVDKGL-------KTVLKDATP--AGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLT  404 (737)
T ss_pred             ccEEEEEC-CCHhHHHHHHHHHhCCC-------cEEEecCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence            36899999 69999999999998886       799999974  33321   111111110     0      1235777


Q ss_pred             EeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh-hHHHHHHHHC-CC-
Q 022227           71 ATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN-TNALILKEFA-PS-  147 (300)
Q Consensus        71 ~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~-~~~~~~~~~~-~~-  147 (300)
                      .++++ +++++||+||.+.              -+|.++.+++.+.+++++++++  |++||++. .++.++.... |. 
T Consensus       405 ~~~~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~la~~~~~p~r  467 (737)
T TIGR02441       405 PTLDY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHC--IIASNTSALPIKDIAAVSSRPEK  467 (737)
T ss_pred             EeCCH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHHHhhcCCccc
Confidence            77775 6899999998873              4577888999999999998875  77899876 3444443321 11 


Q ss_pred             -------CCCCc-----E--EeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC-ceeeeccceee
Q 022227          148 -------IPAKN-----I--TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHATV  201 (300)
Q Consensus       148 -------~p~~~-----i--~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~-~~~p~~s~a~v  201 (300)
                             .|++.     |  +..|.-++......+++.+|..|.-|+..  -|..++ -+.|.+..+.-
T Consensus       468 ~ig~Hff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~--pGFi~NRi~~~~~~ea~~  534 (737)
T TIGR02441       468 VIGMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDG--PGFYTTRCLGPMLAEVIR  534 (737)
T ss_pred             eEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCc--CCchHHHHHHHHHHHHHH
Confidence                   13321     2  22477777666777889999988777543  587777 55666666653

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PLN02778 3,5-epimerase/4-reductase

Probab=98.62  E-value=2.5e-07  Score=84.90  Aligned_cols=139  Identities=12%  Similarity=0.046  Sum_probs=83.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .|||.||||+||+|++++..|+..|.       ++++...+.  ........|+.                 +  .++|+
T Consensus         9 ~~kiLVtG~tGfiG~~l~~~L~~~g~-------~V~~~~~~~--~~~~~v~~~l~-----------------~--~~~D~   60 (298)
T PLN02778          9 TLKFLIYGKTGWIGGLLGKLCQEQGI-------DFHYGSGRL--ENRASLEADID-----------------A--VKPTH   60 (298)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCC-------EEEEecCcc--CCHHHHHHHHH-----------------h--cCCCE
Confidence            48999999999999999999998764       555432210  11111111111                 0  26899


Q ss_pred             EEEeCCCCCCCC-----CcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----------HHHHHCCCCC
Q 022227           85 AVMVGGFPRKEG-----MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----------ILKEFAPSIP  149 (300)
Q Consensus        85 Vi~~ag~~~~~g-----~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----------~~~~~~~~~p  149 (300)
                      |||+|+....+.     .+..+.+..|+....++++.+++.+   ++++++|..+- ..+          ...+..+..|
T Consensus        61 ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~g---v~~v~~sS~~v-y~~~~~~p~~~~~~~~Ee~~p~~  136 (298)
T PLN02778         61 VFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERG---LVLTNYATGCI-FEYDDAHPLGSGIGFKEEDTPNF  136 (298)
T ss_pred             EEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC---CCEEEEecceE-eCCCCCCCcccCCCCCcCCCCCC
Confidence            999998754222     2456778899999999999999874   34555543210 000          0011111122


Q ss_pred             CCcEEeeehhhHHHHHHHHHHHcCCC
Q 022227          150 AKNITCLTRLDHNRALGQISEKLNVQ  175 (300)
Q Consensus       150 ~~~i~~~t~ld~~R~~~~la~~l~v~  175 (300)
                      +.+.++.+++..+++...+++.+++.
T Consensus       137 ~~s~Yg~sK~~~E~~~~~y~~~~~lr  162 (298)
T PLN02778        137 TGSFYSKTKAMVEELLKNYENVCTLR  162 (298)
T ss_pred             CCCchHHHHHHHHHHHHHhhccEEee
Confidence            33577888888877766665554443

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=98.61  E-value=1.5e-07  Score=87.47  Aligned_cols=175  Identities=9%  Similarity=-0.027  Sum_probs=97.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch---hhhhhhhhhhhh--hccC-CcccEEEeCChhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA---EALNGVKMELVD--AAFP-LLKGVVATTDAVE   77 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~---~~l~g~~~dl~~--~~~~-~~~~v~~~~~~~~   77 (300)
                      +.++|.||||+||+|++++..|+..|+       +|+++|..+..   +.++....+...  .... ...++.-..+..+
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~   77 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSKGY-------EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRR   77 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC-------EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHH
Confidence            457899999999999999999998875       78888765311   111111000000  0000 0011111112334


Q ss_pred             hcCC--CcEEEEeCCCCCCCC--CcHHHHHHhhHHHHHHHHHHHhhhcCCC---eEEEEecCchhhHHHH---HHHHCCC
Q 022227           78 ACTG--VNIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAPN---CKVLVVANPANTNALI---LKEFAPS  147 (300)
Q Consensus        78 a~~~--aDvVi~~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~~~~---~~viv~sNP~~~~~~~---~~~~~~~  147 (300)
                      ++++  .|+|||+|+......  .+....+..|+....++++.+.++..+.   .++|++|. ..+....   ..+. ..
T Consensus        78 ~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss-~~vyg~~~~~~~E~-~~  155 (340)
T PLN02653         78 WLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGS-SEMYGSTPPPQSET-TP  155 (340)
T ss_pred             HHHHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEecc-HHHhCCCCCCCCCC-CC
Confidence            4554  599999998753221  1233456779999999999998876421   24555543 2211100   0000 01


Q ss_pred             CCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecC
Q 022227          148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN  187 (300)
Q Consensus       148 ~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~  187 (300)
                      ..+...++.++...+.+...+++.+++.....+.+.++|.
T Consensus       156 ~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp  195 (340)
T PLN02653        156 FHPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESP  195 (340)
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCC
Confidence            1123467888888888877788888875443343344444

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.61  E-value=1.9e-07  Score=95.31  Aligned_cols=168  Identities=18%  Similarity=0.234  Sum_probs=113.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHH-hcccCCCCCCeEEEEEecCCchhhhhh---hhhhhhhhc-----------cCCcccE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIA-RGVMLGTDQPVILHMLDIPPAAEALNG---VKMELVDAA-----------FPLLKGV   69 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~-~~~~~~~~~~~~l~L~D~~~~~~~l~g---~~~dl~~~~-----------~~~~~~v   69 (300)
                      ..||+|+| +|.+|..++..++ ..|+       +|+|+|.++  +.++.   ...+..+..           .....++
T Consensus       309 i~~v~ViG-aG~mG~giA~~~a~~~G~-------~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i  378 (708)
T PRK11154        309 VNKVGVLG-GGLMGGGIAYVTATKAGL-------PVRIKDINP--QGINHALKYSWDLLDKKVKRRHLKPSERDKQMALI  378 (708)
T ss_pred             ccEEEEEC-CchhhHHHHHHHHHHcCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcE
Confidence            36899999 6999999999988 6675       899999964  33321   111111100           0123578


Q ss_pred             EEeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh-hHHHHHHHHC-CC
Q 022227           70 VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN-TNALILKEFA-PS  147 (300)
Q Consensus        70 ~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~-~~~~~~~~~~-~~  147 (300)
                      +.++++ ++++|||+||.+.              -+|.++.+++...++++++|++  |++||.+. .++.++.... ++
T Consensus       379 ~~~~~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~--ilasnTS~l~i~~la~~~~~p~  441 (708)
T PRK11154        379 SGTTDY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHT--IFASNTSSLPIGQIAAAAARPE  441 (708)
T ss_pred             EEeCCh-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHHhcCccc
Confidence            888776 7899999999983              4678889999999999998875  77899876 4444443321 11


Q ss_pred             --------CCCCc-----E--EeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC-ceeeeccceee
Q 022227          148 --------IPAKN-----I--TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHATV  201 (300)
Q Consensus       148 --------~p~~~-----i--~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~-~~~p~~s~a~v  201 (300)
                              .|++.     |  +..|.-++......+++.+|..|.-|+..  -|..++ -+.|.+..+.-
T Consensus       442 r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~--pGfi~nRl~~~~~~EA~~  509 (708)
T PRK11154        442 QVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDG--AGFYVNRILAPYINEAAR  509 (708)
T ss_pred             ceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCceEEEecc--CcHHHHHHHHHHHHHHHH
Confidence                    13331     2  33477777777777889999988877643  477776 56666666653

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.60  E-value=5.5e-07  Score=82.18  Aligned_cols=168  Identities=20%  Similarity=0.147  Sum_probs=96.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhh---hhhh-----cc-------CCcccE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME---LVDA-----AF-------PLLKGV   69 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~d---l~~~-----~~-------~~~~~v   69 (300)
                      .+||+|+| +|.+|+.++..|+..|.       +|+++|.++  +.++.....   +.+.     ..       ....++
T Consensus         3 ~~kIaViG-aG~mG~~iA~~la~~G~-------~V~l~d~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   72 (287)
T PRK08293          3 IKNVTVAG-AGVLGSQIAFQTAFHGF-------DVTIYDISD--EALEKAKERIAKLADRYVRDLEATKEAPAEAALNRI   72 (287)
T ss_pred             ccEEEEEC-CCHHHHHHHHHHHhcCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCe
Confidence            46999999 79999999999988764       799999864  333211111   1110     00       012466


Q ss_pred             EEeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh-HHHHHHHHC-CC
Q 022227           70 VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT-NALILKEFA-PS  147 (300)
Q Consensus        70 ~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~-~~~~~~~~~-~~  147 (300)
                      +.+++..+++++||+||.+.              ..+.+..+++.+.+.+++++++  |+++|.+.. .+.+..... +.
T Consensus        73 ~~~~d~~~a~~~aDlVieav--------------pe~~~~k~~~~~~l~~~~~~~~--ii~sntSt~~~~~~~~~~~~~~  136 (287)
T PRK08293         73 TLTTDLAEAVKDADLVIEAV--------------PEDPEIKGDFYEELAKVAPEKT--IFATNSSTLLPSQFAEATGRPE  136 (287)
T ss_pred             EEeCCHHHHhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCCC--EEEECcccCCHHHHHhhcCCcc
Confidence            77888888899999999984              1234566777777888877665  445666542 233333221 10


Q ss_pred             --------CCCC--c---EE--eeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC-ceeeeccce
Q 022227          148 --------IPAK--N---IT--CLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHA  199 (300)
Q Consensus       148 --------~p~~--~---i~--~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~-~~~p~~s~a  199 (300)
                              .|..  .   +.  ..|.-++......+.+.+|..|..+..-. -|+..+ -+.+.+..+
T Consensus       137 r~vg~Hf~~p~~~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~-pgfi~nRi~~~~~~ea  203 (287)
T PRK08293        137 KFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQ-PGYILNSLLVPFLSAA  203 (287)
T ss_pred             cEEEEcCCCCCCcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCC-CCHhHHHHHHHHHHHH
Confidence                    1221  1   22  23555554455566677886664442111 244444 344444444

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=98.60  E-value=3.7e-07  Score=84.58  Aligned_cols=173  Identities=15%  Similarity=0.100  Sum_probs=96.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc-hhhhhhhhhhhhhhccC-CcccEEEeCChhhhcC--C
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA-AEALNGVKMELVDAAFP-LLKGVVATTDAVEACT--G   81 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~-~~~l~g~~~dl~~~~~~-~~~~v~~~~~~~~a~~--~   81 (300)
                      |||+||||+|++|++++..|+..|.       +|+++|.... .........++.+.... ...++.-.....++++  +
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   73 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH-------DVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHA   73 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC-------eEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCC
Confidence            4899999999999999999998764       6888875321 11000000011110000 0011110112233444  6


Q ss_pred             CcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH----HHHHCCCCCCCcEEe
Q 022227           82 VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEFAPSIPAKNITC  155 (300)
Q Consensus        82 aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~----~~~~~~~~p~~~i~~  155 (300)
                      +|+|||+|+.....  .....+.+..|+.....+++.+++.+.+  ++|.+|+ ..+....    +.+..+.-.+...++
T Consensus        74 ~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~v~~Ss-~~~yg~~~~~~~~E~~~~~~p~~~Y~  150 (338)
T PRK10675         74 IDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK--NLIFSSS-ATVYGDQPKIPYVESFPTGTPQSPYG  150 (338)
T ss_pred             CCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC--EEEEecc-HHhhCCCCCCccccccCCCCCCChhH
Confidence            89999999864321  1234567889999999999999887432  4555554 3221100    001000001122456


Q ss_pred             eehhhHHHHHHHHHHH-cCCCCCCeEEEEEecCC
Q 022227          156 LTRLDHNRALGQISEK-LNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       156 ~t~ld~~R~~~~la~~-l~v~~~~V~~~~V~G~h  188 (300)
                      .++...+++...+++. .+++..-+|...|+|.|
T Consensus       151 ~sK~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~  184 (338)
T PRK10675        151 KSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAH  184 (338)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEeeeecCCC
Confidence            6777777776666654 36666667766777876

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=98.59  E-value=1.5e-07  Score=87.75  Aligned_cols=176  Identities=17%  Similarity=0.203  Sum_probs=102.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-cccEEEeCChhhhcCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTG   81 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-~~~v~~~~~~~~a~~~   81 (300)
                      +++.+++||||+||+|.+++..|++++.     ..+++++|..+....+.....++....... ..++.-......|+++
T Consensus         2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~-----~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~   76 (361)
T KOG1430|consen    2 EKKLSVLVTGGSGFLGQHLVQALLENEL-----KLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQG   76 (361)
T ss_pred             CcCCEEEEECCccHHHHHHHHHHHhccc-----ccEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhccC
Confidence            4557999999999999999999998763     138999998653222222222210111011 1222233357788999


Q ss_pred             CcEEEEeCCCC-CCCCC-cHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhH---HHHHH-HHCCCCCCC--cE
Q 022227           82 VNIAVMVGGFP-RKEGM-ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN---ALILK-EFAPSIPAK--NI  153 (300)
Q Consensus        82 aDvVi~~ag~~-~~~g~-~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~---~~~~~-~~~~~~p~~--~i  153 (300)
                      + .|+|+|..+ ..-.+ .|......|+...+++.+++.+.+   ++.+|+|+...+.   ..+.. .....+|..  ..
T Consensus        77 ~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~---v~~lIYtSs~~Vvf~g~~~~n~~E~~p~p~~~~d~  152 (361)
T KOG1430|consen   77 A-VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELG---VKRLIYTSSAYVVFGGEPIINGDESLPYPLKHIDP  152 (361)
T ss_pred             c-eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhC---CCEEEEecCceEEeCCeecccCCCCCCCccccccc
Confidence            9 666655432 22233 466667889999999999999985   4456666554321   11111 111123422  15


Q ss_pred             EeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecC
Q 022227          154 TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN  187 (300)
Q Consensus       154 ~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~  187 (300)
                      ++.|+...+++....+..-+....-+|...|+|+
T Consensus       153 Y~~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGp  186 (361)
T KOG1430|consen  153 YGESKALAEKLVLEANGSDDLYTCALRPPGIYGP  186 (361)
T ss_pred             cchHHHHHHHHHHHhcCCCCeeEEEEccccccCC
Confidence            7777776655554443333345566666666775

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=98.57  E-value=1.3e-07  Score=84.30  Aligned_cols=170  Identities=13%  Similarity=0.021  Sum_probs=106.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      .++||+||||+||||||++..|+..|-       +|..+|...+     +....++++.....-++........-+..+|
T Consensus        26 ~~lrI~itGgaGFIgSHLvdkLm~egh-------~VIa~Dn~ft-----g~k~n~~~~~~~~~fel~~hdv~~pl~~evD   93 (350)
T KOG1429|consen   26 QNLRILITGGAGFIGSHLVDKLMTEGH-------EVIALDNYFT-----GRKENLEHWIGHPNFELIRHDVVEPLLKEVD   93 (350)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHhcCC-------eEEEEecccc-----cchhhcchhccCcceeEEEeechhHHHHHhh
Confidence            458999999999999999999998762       7888887532     2223344443222223333333445688999


Q ss_pred             EEEEeCCCCCCCC--CcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH--------HHHHHCCCCCCCcE
Q 022227           84 IAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL--------ILKEFAPSIPAKNI  153 (300)
Q Consensus        84 vVi~~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~--------~~~~~~~~~p~~~i  153 (300)
                      -|+++|.....++  .+..+.+..|.-.+.+.....++.+   ++++.+|... +-..        .-|-....+.++--
T Consensus        94 ~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~---aR~l~aSTse-VYgdp~~hpq~e~ywg~vnpigpr~c  169 (350)
T KOG1429|consen   94 QIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARFLLASTSE-VYGDPLVHPQVETYWGNVNPIGPRSC  169 (350)
T ss_pred             hhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhC---ceEEEeeccc-ccCCcccCCCccccccccCcCCchhh
Confidence            9999987654333  2445567778777777777777774   5677766432 1100        00000000111223


Q ss_pred             EeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          154 TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       154 ~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      +...++-++++.+.+.+..|+..+-.+.++.+|.-+
T Consensus       170 ydegKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm  205 (350)
T KOG1429|consen  170 YDEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRM  205 (350)
T ss_pred             hhHHHHHHHHHHHHhhcccCcEEEEEeeecccCCcc
Confidence            445566677888888899999888888888778554

>CHL00194 ycf39 Ycf39; Provisional

Probab=98.57  E-value=2.5e-07  Score=85.38  Aligned_cols=109  Identities=12%  Similarity=0.045  Sum_probs=69.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-CcccEEEeCChhhhcCCCcE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-~~~~v~~~~~~~~a~~~aDv   84 (300)
                      |||+|+||+|++|++++..|+..|+       +|+.++++.  ++...    +.+.... ...++.-..+..++++++|+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~-------~V~~l~R~~--~~~~~----l~~~~v~~v~~Dl~d~~~l~~al~g~d~   67 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY-------QVRCLVRNL--RKASF----LKEWGAELVYGDLSLPETLPPSFKGVTA   67 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-------eEEEEEcCh--HHhhh----HhhcCCEEEECCCCCHHHHHHHHCCCCE
Confidence            4899999999999999999998875       788887653  22110    1110000 00111112245788999999


Q ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      ||++++....   +..+....|.....++++++++.+-+  ++|.+|.
T Consensus        68 Vi~~~~~~~~---~~~~~~~~~~~~~~~l~~aa~~~gvk--r~I~~Ss  110 (317)
T CHL00194         68 IIDASTSRPS---DLYNAKQIDWDGKLALIEAAKAAKIK--RFIFFSI  110 (317)
T ss_pred             EEECCCCCCC---CccchhhhhHHHHHHHHHHHHHcCCC--EEEEecc
Confidence            9998754321   12234567888889999999887542  5666554

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=98.52  E-value=7.5e-08  Score=84.12  Aligned_cols=159  Identities=16%  Similarity=0.214  Sum_probs=100.3

Q ss_pred             EEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh-------hhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG-------VKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         8 V~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g-------~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      |+|+||+|++|++++..|+.++.       +++.+...+..+....       ...|+.+..           ...+.++
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~-------~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----------~~~~~~~   62 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGH-------EVIVLSRSSNSESFEEKKLNVEFVIGDLTDKE-----------QLEKLLE   62 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTT-------EEEEEESCSTGGHHHHHHTTEEEEESETTSHH-----------HHHHHHH
T ss_pred             EEEEccCCHHHHHHHHHHHHcCC-------ccccccccccccccccccceEEEEEeeccccc-----------ccccccc
Confidence            78999999999999999998875       4443433322221110       012222211           3455566


Q ss_pred             CC--cEEEEeCCCCC--CCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH--CCCCC--CCc
Q 022227           81 GV--NIAVMVGGFPR--KEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF--APSIP--AKN  152 (300)
Q Consensus        81 ~a--DvVi~~ag~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~--~~~~p--~~~  152 (300)
                      +.  |.||++|+...  ....+..+....|+...+++.+.+.+...  .++|+.|. ..+.... ...  ....+  +..
T Consensus        63 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~~i~~sS-~~~y~~~-~~~~~~e~~~~~~~~  138 (236)
T PF01370_consen   63 KANIDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGV--KRFIFLSS-ASVYGDP-DGEPIDEDSPINPLS  138 (236)
T ss_dssp             HHTESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT--SEEEEEEE-GGGGTSS-SSSSBETTSGCCHSS
T ss_pred             ccCceEEEEeeccccccccccccccccccccccccccccccccccc--cccccccc-ccccccc-ccccccccccccccc
Confidence            66  99999998753  11134567788999999999999999864  26677665 3211000 000  00001  112


Q ss_pred             EEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          153 ITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       153 i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      .++.++...+++...++++.+++...++...|+|.+
T Consensus       139 ~Y~~~K~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~  174 (236)
T PF01370_consen  139 PYGASKRAAEELLRDYAKKYGLRVTILRPPNVYGPG  174 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSEEEEEEESEEESTT
T ss_pred             cccccccccccccccccccccccccccccccccccc
Confidence            355667777777777888889999999999999977

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.52  E-value=9e-07  Score=80.52  Aligned_cols=166  Identities=22%  Similarity=0.293  Sum_probs=95.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh-hhh------hhhhhhc-c------CCcccEEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN-GVK------MELVDAA-F------PLLKGVVA   71 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~-g~~------~dl~~~~-~------~~~~~v~~   71 (300)
                      .||+|+| +|.+|..++..++..|+       +++++|+++  ++++ +..      ..+.+.. .      ....+++.
T Consensus         4 ~kI~VIG-~G~mG~~ia~~la~~g~-------~V~~~d~~~--~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~   73 (282)
T PRK05808          4 QKIGVIG-AGTMGNGIAQVCAVAGY-------DVVMVDISD--AAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG   73 (282)
T ss_pred             cEEEEEc-cCHHHHHHHHHHHHCCC-------ceEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence            4899999 79999999999998875       699999864  3332 110      0111100 0      01235666


Q ss_pred             eCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCC----
Q 022227           72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS----  147 (300)
Q Consensus        72 ~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~----  147 (300)
                      +++. +++++||+||.+.              ..+....+++.+.+.+++++++  +++||.+......+.+....    
T Consensus        74 ~~~~-~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~--il~s~ts~~~~~~la~~~~~~~r~  136 (282)
T PRK05808         74 TTDL-DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEA--ILATNTSSLSITELAAATKRPDKV  136 (282)
T ss_pred             eCCH-HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHHhhCCCcce
Confidence            7665 5689999999984              2334556678888888887775  33666655333233332110    


Q ss_pred             ------CCCCc-----E--EeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC-ceeeecccee
Q 022227          148 ------IPAKN-----I--TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHAT  200 (300)
Q Consensus       148 ------~p~~~-----i--~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~-~~~p~~s~a~  200 (300)
                            .|...     +  +..|.-+.......+.+.+|..|..+...  -|+-++ -+++.++.+.
T Consensus       137 ig~h~~~P~~~~~~vev~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~--~g~i~~Ri~~~~~~ea~  201 (282)
T PRK05808        137 IGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEVKNA--PGFVVNRILIPMINEAI  201 (282)
T ss_pred             EEeeccCCcccCccEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCc--cChHHHHHHHHHHHHHH
Confidence                  12211     2  22344455445556667888777555322  354444 4445554443

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=98.47  E-value=7.2e-07  Score=81.26  Aligned_cols=152  Identities=15%  Similarity=0.179  Sum_probs=93.9

Q ss_pred             EEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC--CCcEEE
Q 022227            9 LVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--GVNIAV   86 (300)
Q Consensus         9 ~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~--~aDvVi   86 (300)
                      .||||+||||++++..|+..+.       +++++...        ...|+.+..           +..+.++  ++|+||
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~-------~v~~~~~~--------~~~Dl~~~~-----------~l~~~~~~~~~d~Vi   54 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGF-------TNLVLRTH--------KELDLTRQA-----------DVEAFFAKEKPTYVI   54 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCC-------cEEEeecc--------ccCCCCCHH-----------HHHHHHhccCCCEEE
Confidence            4899999999999999987763       34444321        123454432           2333334  579999


Q ss_pred             EeCCCCCC---CCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH----HHHHHHC----CCCCCCcEEe
Q 022227           87 MVGGFPRK---EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA----LILKEFA----PSIPAKNITC  155 (300)
Q Consensus        87 ~~ag~~~~---~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~----~~~~~~~----~~~p~~~i~~  155 (300)
                      |+|+....   ......+....|.....++++.+++...+  ++|++|+.. +..    .-..+..    +.-|....++
T Consensus        55 h~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~~i~~SS~~-vyg~~~~~~~~E~~~~~~~~~p~~~~Y~  131 (306)
T PLN02725         55 LAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVK--KLLFLGSSC-IYPKFAPQPIPETALLTGPPEPTNEWYA  131 (306)
T ss_pred             EeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCC--eEEEeCcee-ecCCCCCCCCCHHHhccCCCCCCcchHH
Confidence            99986431   12234567888999999999999987532  466665421 100    0000100    1111112366


Q ss_pred             eehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       156 ~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      .++....++...+.+..+++...++...|+|.+.
T Consensus       132 ~sK~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~  165 (306)
T PLN02725        132 IAKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHD  165 (306)
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCC
Confidence            6777666666666777899988898888899753

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.47  E-value=3.6e-06  Score=78.64  Aligned_cols=114  Identities=20%  Similarity=0.219  Sum_probs=75.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhh--------hhhhhccC--CcccEEEeCCh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM--------ELVDAAFP--LLKGVVATTDA   75 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~--------dl~~~~~~--~~~~v~~~~~~   75 (300)
                      |||+|+| +|+||...+-.|++.|.       +++.+|+++  ++.+....        .|++....  ...++..|+|.
T Consensus         1 MkI~viG-tGYVGLv~g~~lA~~GH-------eVv~vDid~--~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~   70 (414)
T COG1004           1 MKITVIG-TGYVGLVTGACLAELGH-------EVVCVDIDE--SKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDY   70 (414)
T ss_pred             CceEEEC-CchHHHHHHHHHHHcCC-------eEEEEeCCH--HHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCH
Confidence            6999999 89999999988888763       899999975  44332110        11111111  12458899999


Q ss_pred             hhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEe--cCchhh
Q 022227           76 VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVV--ANPANT  136 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~--sNP~~~  136 (300)
                      .+|++++|++|++-|.|.++.-+      .+...+...++.|.++-++.. +||.  |=|+..
T Consensus        71 ~~a~~~adv~fIavgTP~~~dg~------aDl~~V~ava~~i~~~~~~~~-vvV~KSTVPvGt  126 (414)
T COG1004          71 EEAVKDADVVFIAVGTPPDEDGS------ADLSYVEAVAKDIGEILDGKA-VVVIKSTVPVGT  126 (414)
T ss_pred             HHHHhcCCEEEEEcCCCCCCCCC------ccHHHHHHHHHHHHhhcCCCe-EEEEcCCCCCCc
Confidence            99999999999999988765221      234566667777766655333 4443  335543

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.44  E-value=2.2e-07  Score=80.25  Aligned_cols=158  Identities=18%  Similarity=0.243  Sum_probs=107.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh----hhhhhhhhhcc---------------CC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN----GVKMELVDAAF---------------PL   65 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~----g~~~dl~~~~~---------------~~   65 (300)
                      .+.|+|+| +|.+|+.+|...++.|+       .+.|+|.++  +.|.    +....+.+.+.               ..
T Consensus        11 ~~~V~ivG-aG~MGSGIAQv~a~sg~-------~V~l~d~~~--~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~   80 (298)
T KOG2304|consen   11 IKNVAIVG-AGQMGSGIAQVAATSGL-------NVWLVDANE--DALSRATKAISSSLKRVAKKKKADDPVALEEFVDDT   80 (298)
T ss_pred             ccceEEEc-ccccchhHHHHHHhcCC-------ceEEecCCH--HHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHH
Confidence            45799999 79999999999998886       799999975  3332    12112211110               01


Q ss_pred             cccEEEeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh-hHHHHHHHH
Q 022227           66 LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN-TNALILKEF  144 (300)
Q Consensus        66 ~~~v~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~-~~~~~~~~~  144 (300)
                      +.++..+++...+++|||+||.+              +-+|+++.+++.+.+++.|++++  |..||.+. .++.++.-.
T Consensus        81 l~ri~~~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~--il~tNTSSl~lt~ia~~~  144 (298)
T KOG2304|consen   81 LDRIKTSTNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSST--ILATNTSSLSLTDIASAT  144 (298)
T ss_pred             HHHHHHcCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccce--EEeecccceeHHHHHhhc
Confidence            34566778888999999988665              67899999999999999998764  77888864 344433221


Q ss_pred             C-----CCC----CC------CcE-EeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          145 A-----PSI----PA------KNI-TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       145 ~-----~~~----p~------~~i-~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                      .     .|+    |.      +.| ...|.-++-.+...+++.+|..+...+..+  |+.-+
T Consensus       145 ~~~srf~GlHFfNPvPvMKLvEVir~~~TS~eTf~~l~~f~k~~gKttVackDtp--GFIVN  204 (298)
T KOG2304|consen  145 QRPSRFAGLHFFNPVPVMKLVEVIRTDDTSDETFNALVDFGKAVGKTTVACKDTP--GFIVN  204 (298)
T ss_pred             cChhhhceeeccCCchhHHHhhhhcCCCCCHHHHHHHHHHHHHhCCCceeecCCC--chhhh
Confidence            0     111    11      123 334666676777788999999888888765  76544

>PRK05865 hypothetical protein; Provisional

Probab=98.43  E-value=2.2e-06  Score=88.41  Aligned_cols=101  Identities=15%  Similarity=0.173  Sum_probs=70.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh----hhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN----GVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~----g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      |||.|+||+|++|++++..|+..|.       +++.+|.... +...    ....|+.+           ..+..+++++
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~-------~Vv~l~R~~~-~~~~~~v~~v~gDL~D-----------~~~l~~al~~   61 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGH-------EVVGIARHRP-DSWPSSADFIAADIRD-----------ATAVESAMTG   61 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEECCch-hhcccCceEEEeeCCC-----------HHHHHHHHhC
Confidence            4899999999999999999998775       7888887531 1111    01112221           1244567889


Q ss_pred             CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                      +|+|||+|+... +      ....|+....++++.+.+.+. . ++|++|++.
T Consensus        62 vD~VVHlAa~~~-~------~~~vNv~GT~nLLeAa~~~gv-k-r~V~iSS~~  105 (854)
T PRK05865         62 ADVVAHCAWVRG-R------NDHINIDGTANVLKAMAETGT-G-RIVFTSSGH  105 (854)
T ss_pred             CCEEEECCCccc-c------hHHHHHHHHHHHHHHHHHcCC-C-eEEEECCcH
Confidence            999999997542 1      356799999999999988753 2 677788765

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.43  E-value=1.5e-06  Score=72.25  Aligned_cols=97  Identities=20%  Similarity=0.253  Sum_probs=65.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc---c---CCcccEEEeCChhhhcC
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA---F---PLLKGVVATTDAVEACT   80 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~---~---~~~~~v~~~~~~~~a~~   80 (300)
                      ||+|+| +|..|.++|..|...+.       +|.|+++++  +.++...  -.+..   +   .+..++.+++|+.++++
T Consensus         1 KI~ViG-aG~~G~AlA~~la~~g~-------~V~l~~~~~--~~~~~i~--~~~~n~~~~~~~~l~~~i~~t~dl~~a~~   68 (157)
T PF01210_consen    1 KIAVIG-AGNWGTALAALLADNGH-------EVTLWGRDE--EQIEEIN--ETRQNPKYLPGIKLPENIKATTDLEEALE   68 (157)
T ss_dssp             EEEEES-SSHHHHHHHHHHHHCTE-------EEEEETSCH--HHHHHHH--HHTSETTTSTTSBEETTEEEESSHHHHHT
T ss_pred             CEEEEC-cCHHHHHHHHHHHHcCC-------EEEEEeccH--HHHHHHH--HhCCCCCCCCCcccCcccccccCHHHHhC
Confidence            899999 79999999999998874       899999863  3332211  11211   1   12357888999999999


Q ss_pred             CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEec
Q 022227           81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA  131 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~s  131 (300)
                      +||+||++-  |              ....+++++.+..+-+++..+|.++
T Consensus        69 ~ad~Iiiav--P--------------s~~~~~~~~~l~~~l~~~~~ii~~~  103 (157)
T PF01210_consen   69 DADIIIIAV--P--------------SQAHREVLEQLAPYLKKGQIIISAT  103 (157)
T ss_dssp             T-SEEEE-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred             cccEEEecc--c--------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence            999999872  2              1334677788888765555555544

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.41  E-value=4.2e-06  Score=82.28  Aligned_cols=150  Identities=16%  Similarity=0.212  Sum_probs=90.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhh---hhhhhh-----hcc------CCcccE
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGV---KMELVD-----AAF------PLLKGV   69 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~---~~dl~~-----~~~------~~~~~v   69 (300)
                      +..||+|+| +|.+|+.++..++..|+       +|+++|+++  +.++..   ..+..+     ...      ....++
T Consensus         6 ~i~~V~VIG-aG~MG~gIA~~la~aG~-------~V~l~D~~~--e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i   75 (507)
T PRK08268          6 SIATVAVIG-AGAMGAGIAQVAAQAGH-------TVLLYDARA--GAAAAARDGIAARLAKLVEKGKLTAEQADAALARL   75 (507)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence            457899999 79999999999998876       899999974  444321   111111     000      112456


Q ss_pred             EEeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh-HHHHHHHHC-C-
Q 022227           70 VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT-NALILKEFA-P-  146 (300)
Q Consensus        70 ~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~-~~~~~~~~~-~-  146 (300)
                      +.+++. +++++||+||.+.              -++..+.+.+...+++.+++++  |++||.+.+ .+.+..... + 
T Consensus        76 ~~~~~~-~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~a--ilasntStl~i~~la~~~~~p~  138 (507)
T PRK08268         76 RPVEAL-ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDC--ILATNTSSLSITAIAAALKHPE  138 (507)
T ss_pred             EEeCCH-HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCcc
Confidence            777775 5689999999973              2345555666677888887675  555665432 223322221 1 


Q ss_pred             ---C---C-CCC--c---EEee--ehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          147 ---S---I-PAK--N---ITCL--TRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       147 ---~---~-p~~--~---i~~~--t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                         +   + |..  +   +.++  |.-++......+++.+|..|.-|.
T Consensus       139 r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~  186 (507)
T PRK08268        139 RVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRAK  186 (507)
T ss_pred             cEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEec
Confidence               1   1 221  2   2232  556665556677888997775443

>PRK09135 pteridine reductase; Provisional

Probab=98.41  E-value=5.4e-06  Score=72.92  Aligned_cols=154  Identities=12%  Similarity=0.090  Sum_probs=85.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC----CcccEEEeCChhhh
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----LLKGVVATTDAVEA   78 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~----~~~~v~~~~~~~~a   78 (300)
                      ++.++|.|+||+|++|++++..|+..|.       ++++++... .+.++....++.+....    ...+++-..+...+
T Consensus         4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~-------~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~   75 (249)
T PRK09135          4 DSAKVALITGGARRIGAAIARTLHAAGY-------RVAIHYHRS-AAEADALAAELNALRPGSAAALQADLLDPDALPEL   75 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCC-HHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHH
Confidence            3457899999999999999999998775       788888642 23333222233221100    00111111111222


Q ss_pred             c-------CCCcEEEEeCCCCCCC---C---CcHHHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEecCchhhHHHHHHHH
Q 022227           79 C-------TGVNIAVMVGGFPRKE---G---MERKDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        79 ~-------~~aDvVi~~ag~~~~~---g---~~r~dl~~~N~~i~~~i~~~i~~~~~-~~~~viv~sNP~~~~~~~~~~~  144 (300)
                      +       ...|+||++||.....   .   .+..+.+..|+.....+.+.+.++-. ....++..++ ..       ..
T Consensus        76 ~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~-~~-------~~  147 (249)
T PRK09135         76 VAACVAAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITD-IH-------AE  147 (249)
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeC-hh-------hc
Confidence            2       3579999999863211   1   12244677888877777777654321 1223443332 11       11


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                       ...++...++.++.....+...++++++
T Consensus       148 -~~~~~~~~Y~~sK~~~~~~~~~l~~~~~  175 (249)
T PRK09135        148 -RPLKGYPVYCAAKAALEMLTRSLALELA  175 (249)
T ss_pred             -CCCCCchhHHHHHHHHHHHHHHHHHHHC
Confidence             2233344577777777777777777764

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.38  E-value=3.5e-06  Score=77.02  Aligned_cols=106  Identities=16%  Similarity=0.233  Sum_probs=65.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhh--------hhccC------Cccc
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELV--------DAAFP------LLKG   68 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~--------~~~~~------~~~~   68 (300)
                      ++.+||+|+| +|.+|..++..|+..|.       +|+++|.++  +.++.....+.        ....+      ...+
T Consensus         2 ~~~~kI~vIG-aG~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~   71 (292)
T PRK07530          2 MAIKKVGVIG-AGQMGNGIAHVCALAGY-------DVLLNDVSA--DRLEAGLATINGNLARQVAKGKISEEARAAALAR   71 (292)
T ss_pred             CCCCEEEEEC-CcHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhC
Confidence            3456999999 79999999999998774       799999864  33332111111        01000      1134


Q ss_pred             EEEeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           69 VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        69 v~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      ++.+++. +++++||+||.+.  |            .+....+.+.+.+.+.+++++  +++||.+.
T Consensus        72 i~~~~~~-~~~~~aD~Vieav--p------------e~~~~k~~~~~~l~~~~~~~~--ii~s~ts~  121 (292)
T PRK07530         72 ISTATDL-EDLADCDLVIEAA--T------------EDETVKRKIFAQLCPVLKPEA--ILATNTSS  121 (292)
T ss_pred             eEeeCCH-HHhcCCCEEEEcC--c------------CCHHHHHHHHHHHHhhCCCCc--EEEEcCCC
Confidence            6666665 6799999999984  1            112333455566777776665  33455543

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.36  E-value=8.1e-06  Score=74.73  Aligned_cols=104  Identities=24%  Similarity=0.289  Sum_probs=64.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhh-------hhhhhcc-------CCcccEE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM-------ELVDAAF-------PLLKGVV   70 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~-------dl~~~~~-------~~~~~v~   70 (300)
                      .+||+|+| +|.+|+.++..|+..|+       +|+++|.++  ++++....       ++.+...       .....+.
T Consensus         4 ~~~V~vIG-~G~mG~~iA~~l~~~G~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   73 (295)
T PLN02545          4 IKKVGVVG-AGQMGSGIAQLAAAAGM-------DVWLLDSDP--AALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR   73 (295)
T ss_pred             cCEEEEEC-CCHHHHHHHHHHHhcCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE
Confidence            46899999 79999999999998774       799999864  33321100       1111000       0112344


Q ss_pred             EeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           71 ATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        71 ~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      .+++. +++++||+||.+.              ..+..+...+.+.+.+..++++  |++||.+.
T Consensus        74 ~~~~~-~~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~--il~s~tS~  121 (295)
T PLN02545         74 CTTNL-EELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSA--ILASNTSS  121 (295)
T ss_pred             eeCCH-HHhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCc--EEEECCCC
Confidence            55554 6799999999984              2233444566666777776665  44455544

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.36  E-value=5e-06  Score=75.97  Aligned_cols=104  Identities=16%  Similarity=0.287  Sum_probs=66.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhh-------hhhh----cc------CCcc
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME-------LVDA----AF------PLLK   67 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~d-------l~~~----~~------~~~~   67 (300)
                      ..||+|+| +|.+|..++..|+..|.       +|+++|.++  +.++.....       +...    ..      ....
T Consensus         3 i~~I~ViG-aG~mG~~iA~~la~~G~-------~V~l~d~~~--~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~   72 (291)
T PRK06035          3 IKVIGVVG-SGVMGQGIAQVFARTGY-------DVTIVDVSE--EILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMA   72 (291)
T ss_pred             CcEEEEEC-ccHHHHHHHHHHHhcCC-------eEEEEeCCH--HHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHh
Confidence            35899999 79999999999998875       799999874  333311110       1100    00      0123


Q ss_pred             cEEEeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           68 GVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        68 ~v~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      ++..+++. +++++||+||.+..              .+.+..+++.+.+.+++++++  |++||.+.
T Consensus        73 ~i~~~~~~-~~~~~aDlVieav~--------------e~~~~k~~~~~~l~~~~~~~~--il~S~tsg  123 (291)
T PRK06035         73 RIRTSTSY-ESLSDADFIVEAVP--------------EKLDLKRKVFAELERNVSPET--IIASNTSG  123 (291)
T ss_pred             CcEeeCCH-HHhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCe--EEEEcCCC
Confidence            45555665 67999999999841              233555677777888877665  34566553

>PRK06194 hypothetical protein; Provisional

Probab=98.34  E-value=5.5e-06  Score=74.91  Aligned_cols=162  Identities=17%  Similarity=0.124  Sum_probs=92.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhhcC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEACT   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a~~   80 (300)
                      +.++|.||||+|++|++++..|++.|.       +|+++|.+.  +.++....++......   ...++.-..+..++++
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~   75 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGM-------KLVLADVQQ--DALDRAVAELRAQGAEVLGVRTDVSDAAQVEALAD   75 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence            457899999999999999999998875       788999853  3343333333221100   0011111112222222


Q ss_pred             -------CCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHH----HhhhcCC----CeEEEEecCchhhHHH
Q 022227           81 -------GVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASA----LEQHAAP----NCKVLVVANPANTNAL  139 (300)
Q Consensus        81 -------~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~----i~~~~~~----~~~viv~sNP~~~~~~  139 (300)
                             ..|+||++||.....   ..+.   ...+..|+.....+.+.    +.+.+.+    ...+|++|+....   
T Consensus        76 ~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~---  152 (287)
T PRK06194         76 AALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGL---  152 (287)
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc---
Confidence                   469999999875421   1122   23466676655555444    5544421    1356666553321   


Q ss_pred             HHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEE
Q 022227          140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI  183 (300)
Q Consensus       140 ~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~  183 (300)
                            .+.|....++.++.-...+...+++.++.....|+...
T Consensus       153 ------~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~  190 (287)
T PRK06194        153 ------LAPPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASV  190 (287)
T ss_pred             ------cCCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEE
Confidence                  12233335677777777778888888887766776443

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.34  E-value=3e-06  Score=72.42  Aligned_cols=108  Identities=19%  Similarity=0.263  Sum_probs=62.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhh---hhhhh-----ccC-C-cccEEEeCCh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM---ELVDA-----AFP-L-LKGVVATTDA   75 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~---dl~~~-----~~~-~-~~~v~~~~~~   75 (300)
                      |||+|+| .|++|..+|..|+..|.       +++-+|+++  ++.+....   .+.+.     ... . ..++..+++.
T Consensus         1 M~I~ViG-lGyvGl~~A~~lA~~G~-------~V~g~D~~~--~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~   70 (185)
T PF03721_consen    1 MKIAVIG-LGYVGLPLAAALAEKGH-------QVIGVDIDE--EKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDI   70 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTS-------EEEEE-S-H--HHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEH
T ss_pred             CEEEEEC-CCcchHHHHHHHHhCCC-------EEEEEeCCh--HHHHHHhhccccccccchhhhhccccccccchhhhhh
Confidence            6999999 89999999999999885       799999974  44332211   11100     000 1 2578888899


Q ss_pred             hhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEe
Q 022227           76 VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVV  130 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~  130 (300)
                      .+++++||++|++.+.|..++.+      .+...+.+.++.|.++..++. +|++
T Consensus        71 ~~ai~~adv~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~-lvV~  118 (185)
T PF03721_consen   71 EEAIKDADVVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGD-LVVI  118 (185)
T ss_dssp             HHHHHH-SEEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCE-EEEE
T ss_pred             hhhhhccceEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcc-eEEE
Confidence            99999999999998877655321      123344455555555544443 4444

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.34  E-value=4.4e-06  Score=76.27  Aligned_cols=167  Identities=17%  Similarity=0.236  Sum_probs=92.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhh---hhhhhc-----c------CCcccEEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM---ELVDAA-----F------PLLKGVVA   71 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~---dl~~~~-----~------~~~~~v~~   71 (300)
                      .||+|+| +|.+|..++..|+..|.       +|+++|+++  ++++....   ++.+..     .      ....+++.
T Consensus         2 ~~V~VIG-~G~mG~~iA~~la~~G~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~   71 (288)
T PRK09260          2 EKLVVVG-AGVMGRGIAYVFAVSGF-------QTTLVDIKQ--EQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY   71 (288)
T ss_pred             cEEEEEC-ccHHHHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence            5899999 79999999999998775       799999964  34432111   111100     0      01234667


Q ss_pred             eCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCC----
Q 022227           72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS----  147 (300)
Q Consensus        72 ~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~----  147 (300)
                      +++..+++++||+||.+..              .+..+.+.+...+.+++++++  ++++|.+.+-...+.+....    
T Consensus        72 ~~~~~~~~~~aD~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~--il~~~tSt~~~~~l~~~~~~~~r~  135 (288)
T PRK09260         72 SLDLKAAVADADLVIEAVP--------------EKLELKKAVFETADAHAPAEC--YIATNTSTMSPTEIASFTKRPERV  135 (288)
T ss_pred             eCcHHHhhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHHHhhcCCcccE
Confidence            7788889999999999842              122334455556777777665  33344332111112222111    


Q ss_pred             ------CCCC--c---EEee--ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC-ceeeecccee
Q 022227          148 ------IPAK--N---ITCL--TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHAT  200 (300)
Q Consensus       148 ------~p~~--~---i~~~--t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~-~~~p~~s~a~  200 (300)
                            .|..  +   +.++  |.-+.......+.+.+|..|.-+...  -|.-.+ -+.+.+..+.
T Consensus       136 ~g~h~~~Pv~~~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~--~Gf~~nRl~~~~~~ea~  200 (288)
T PRK09260        136 IAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVVNEF--PGFVTSRISALVGNEAF  200 (288)
T ss_pred             EEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCc--ccHHHHHHHHHHHHHHH
Confidence                  1222  1   2222  45555444556667788766544322  244444 3445555553

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=98.33  E-value=3.2e-06  Score=83.38  Aligned_cols=118  Identities=12%  Similarity=0.075  Sum_probs=73.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh-----c-c--C----CcccEEE
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-----A-F--P----LLKGVVA   71 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~-----~-~--~----~~~~v~~   71 (300)
                      +.+.|+|+||+|++|++++..|+..|.       +|++++++.  +++.....++.+.     . .  .    ...++.-
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~-------~Vval~Rn~--ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD  149 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGF-------RVRAGVRSA--QRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK  149 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHhhhhccccccccccCceEEEEecCCC
Confidence            346899999999999999999998775       688887753  3443222222110     0 0  0    0011111


Q ss_pred             eCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        72 ~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      ..+..+++.++|+||+++|.......+-...+..|....+++++++.+.+- + ++|++|.
T Consensus       150 ~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agV-g-RIV~VSS  208 (576)
T PLN03209        150 PDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKV-N-HFILVTS  208 (576)
T ss_pred             HHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCC-C-EEEEEcc
Confidence            113445688999999999875432222233466788889999999887753 2 5666664

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=98.32  E-value=3.1e-06  Score=76.46  Aligned_cols=147  Identities=16%  Similarity=0.240  Sum_probs=89.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC--cE
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV--NI   84 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a--Dv   84 (300)
                      ||+|+||+|++|++++..|+..|.       ++++++..         ..|+.+..           +..++++++  |+
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~-------~v~~~~r~---------~~d~~~~~-----------~~~~~~~~~~~d~   53 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR-------VVVALTSS---------QLDLTDPE-----------ALERLLRAIRPDA   53 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC-------EEEEeCCc---------ccCCCCHH-----------HHHHHHHhCCCCE
Confidence            689999999999999999998764       78888753         13444332           345556655  99


Q ss_pred             EEEeCCCCCCCC--CcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCCcEEeeeh
Q 022227           85 AVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLTR  158 (300)
Q Consensus        85 Vi~~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~~i~~~t~  158 (300)
                      ||++|+......  .........|+....++++.+.+..   .++|++|... +...    ...+. ....+...++.++
T Consensus        54 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~v~~Ss~~-vy~~~~~~~~~E~-~~~~~~~~Y~~~K  128 (287)
T TIGR01214        54 VVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHG---ARLVHISTDY-VFDGEGKRPYRED-DATNPLNVYGQSK  128 (287)
T ss_pred             EEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEeeee-eecCCCCCCCCCC-CCCCCcchhhHHH
Confidence            999998653221  2345567889999999999988764   2566666421 0000    00000 0000112344444


Q ss_pred             hhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       159 ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ...++    +.+.++.+..-++...|+|.+.
T Consensus       129 ~~~E~----~~~~~~~~~~ilR~~~v~G~~~  155 (287)
T TIGR01214       129 LAGEQ----AIRAAGPNALIVRTSWLYGGGG  155 (287)
T ss_pred             HHHHH----HHHHhCCCeEEEEeeecccCCC
Confidence            43333    3344467777777777788764

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=98.31  E-value=3.1e-06  Score=71.36  Aligned_cols=98  Identities=20%  Similarity=0.257  Sum_probs=64.6

Q ss_pred             EEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEEEE
Q 022227            8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVM   87 (300)
Q Consensus         8 V~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvVi~   87 (300)
                      |+|+||+|++|+.++..|++++.       +|+++-+++  ++++. ...+.-    ...++.-..+..++++++|.||+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~-------~V~~~~R~~--~~~~~-~~~~~~----~~~d~~d~~~~~~al~~~d~vi~   66 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH-------EVTALVRSP--SKAED-SPGVEI----IQGDLFDPDSVKAALKGADAVIH   66 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS-------EEEEEESSG--GGHHH-CTTEEE----EESCTTCHHHHHHHHTTSSEEEE
T ss_pred             eEEECCCChHHHHHHHHHHHCCC-------EEEEEecCc--hhccc-cccccc----ceeeehhhhhhhhhhhhcchhhh
Confidence            78999999999999999999873       788877653  33321 000000    00011011245788999999999


Q ss_pred             eCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           88 VGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        88 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      ++|.+.+           ....++.+++++++.+.+  +++++|.
T Consensus        67 ~~~~~~~-----------~~~~~~~~~~a~~~~~~~--~~v~~s~   98 (183)
T PF13460_consen   67 AAGPPPK-----------DVDAAKNIIEAAKKAGVK--RVVYLSS   98 (183)
T ss_dssp             CCHSTTT-----------HHHHHHHHHHHHHHTTSS--EEEEEEE
T ss_pred             hhhhhcc-----------cccccccccccccccccc--cceeeec
Confidence            9876543           167788899999887543  5666654

...

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=98.30  E-value=2.9e-06  Score=76.61  Aligned_cols=98  Identities=21%  Similarity=0.313  Sum_probs=66.7

Q ss_pred             EEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEEEE
Q 022227            8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVM   87 (300)
Q Consensus         8 V~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvVi~   87 (300)
                      |.|+||+|++|++++..|+..|+       +|+.+++++.  .......+  ..     ..+.. ....++++++|+|||
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~~~~~~--~~-----~~~~~-~~~~~~~~~~D~Vvh   63 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH-------EVTILTRSPP--AGANTKWE--GY-----KPWAP-LAESEALEGADAVIN   63 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC-------EEEEEeCCCC--CCCcccce--ee-----ecccc-cchhhhcCCCCEEEE
Confidence            57999999999999999998764       7888887642  11111000  00     00001 234567899999999


Q ss_pred             eCCCCCCCC-C---cHHHHHHhhHHHHHHHHHHHhhhcC
Q 022227           88 VGGFPRKEG-M---ERKDVMSKNVSIYKAQASALEQHAA  122 (300)
Q Consensus        88 ~ag~~~~~g-~---~r~dl~~~N~~i~~~i~~~i~~~~~  122 (300)
                      +|+.+...+ .   ...++...|+...+++++.+.+.+.
T Consensus        64 ~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~  102 (292)
T TIGR01777        64 LAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQ  102 (292)
T ss_pred             CCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence            998754322 1   2345677899999999999998754

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.29  E-value=1e-05  Score=74.54  Aligned_cols=105  Identities=14%  Similarity=0.257  Sum_probs=64.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc---c------CCcccEEEeCCh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA---F------PLLKGVVATTDA   75 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~---~------~~~~~v~~~~~~   75 (300)
                      .+||+|+| +|.+|..++..|+..|+       +++++|.++  +.++.....+....   .      ....+++.+++.
T Consensus         4 ~~~I~vIG-aG~mG~~iA~~l~~~g~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   73 (311)
T PRK06130          4 IQNLAIIG-AGTMGSGIAALFARKGL-------QVVLIDVME--GALERARGVIERALGVYAPLGIASAGMGRIRMEAGL   73 (311)
T ss_pred             ccEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEECCH--HHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCH
Confidence            46899999 79999999999998764       799999864  33332211111000   0      012335566677


Q ss_pred             hhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           76 VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      .+++++||+||++.-              ........+.+.+....++++  +++||.+.
T Consensus        74 ~~~~~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~--ii~s~tsg  117 (311)
T PRK06130         74 AAAVSGADLVIEAVP--------------EKLELKRDVFARLDGLCDPDT--IFATNTSG  117 (311)
T ss_pred             HHHhccCCEEEEecc--------------CcHHHHHHHHHHHHHhCCCCc--EEEECCCC
Confidence            778999999999841              112333455555666665554  44455543

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.27  E-value=7.3e-06  Score=80.46  Aligned_cols=167  Identities=22%  Similarity=0.249  Sum_probs=100.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhh-------hhhh-hcc------CCcccE
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM-------ELVD-AAF------PLLKGV   69 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~-------dl~~-~~~------~~~~~v   69 (300)
                      +..||+||| +|.+|+.++..++..|+       +++++|+++  ++++....       .+.. ...      ....++
T Consensus         4 ~~~kV~VIG-aG~MG~gIA~~la~aG~-------~V~l~d~~~--e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i   73 (503)
T TIGR02279         4 NVVTVAVIG-AGAMGAGIAQVAASAGH-------QVLLYDIRA--EALARAIAGIEARLNSLVTKGKLTAEECERTLKRL   73 (503)
T ss_pred             CccEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcc
Confidence            346899999 79999999999998875       799999974  44431100       0110 000      113456


Q ss_pred             EEeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh-HHHHHHHHC-C-
Q 022227           70 VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT-NALILKEFA-P-  146 (300)
Q Consensus        70 ~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~-~~~~~~~~~-~-  146 (300)
                      +.++++ +++++||+||.+.              .++..+.+.+...+.+.+++++  |++||.+.. .+.++.... + 
T Consensus        74 ~~~~~~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~--IlasnTStl~i~~iA~~~~~p~  136 (503)
T TIGR02279        74 IPVTDL-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADT--IIASNTSSLSITAIAAGLARPE  136 (503)
T ss_pred             EEeCCH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCe--EEEECCCCCCHHHHHHhcCccc
Confidence            777776 6789999999973              2345666677777888888764  677777653 233333321 1 


Q ss_pred             ---C---C-CCC--c---EEee--ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC-ceeeeccce
Q 022227          147 ---S---I-PAK--N---ITCL--TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHA  199 (300)
Q Consensus       147 ---~---~-p~~--~---i~~~--t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~-~~~p~~s~a  199 (300)
                         +   + |..  +   +.++  |.-++......+.+.+|..|.-+...  -|..++ -+.+.++.+
T Consensus       137 r~~G~HFf~Papv~~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~--pGfi~Nrl~~~~~~EA  202 (503)
T TIGR02279       137 RVAGLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHST--PGFIVNRVARPYYAEA  202 (503)
T ss_pred             ceEEEeccCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCC--CCcHHHHHHHHHHHHH
Confidence               1   1 222  2   2233  55666556667788999877655422  354444 233344444

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.24  E-value=1.2e-05  Score=78.86  Aligned_cols=105  Identities=17%  Similarity=0.221  Sum_probs=68.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhh-------h---hhccCCcccEEEeCCh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL-------V---DAAFPLLKGVVATTDA   75 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl-------~---~~~~~~~~~v~~~~~~   75 (300)
                      +||+||| +|.+|+.++..|+..|+       +|+++|.++  ++++.....+       .   ........++..++++
T Consensus         5 ~kIavIG-~G~MG~~iA~~la~~G~-------~V~v~D~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~   74 (495)
T PRK07531          5 MKAACIG-GGVIGGGWAARFLLAGI-------DVAVFDPHP--EAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASL   74 (495)
T ss_pred             CEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCH
Confidence            6899999 79999999999998875       799999964  3333211000       0   0000011246677788


Q ss_pred             hhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh
Q 022227           76 VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT  136 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~  136 (300)
                      .+++++||+||.+.              ..+..+.+.+.+.+.+.+++++  |+.||.+..
T Consensus        75 ~ea~~~aD~Vieav--------------pe~~~vk~~l~~~l~~~~~~~~--iI~SsTsgi  119 (495)
T PRK07531         75 AEAVAGADWIQESV--------------PERLDLKRRVLAEIDAAARPDA--LIGSSTSGF  119 (495)
T ss_pred             HHHhcCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc--EEEEcCCCC
Confidence            88999999999873              1223444555566777777664  566776653

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.20  E-value=1.5e-05  Score=70.21  Aligned_cols=155  Identities=19%  Similarity=0.164  Sum_probs=80.8

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc-c-CCcccEEEeCChh--
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-F-PLLKGVVATTDAV--   76 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~-~-~~~~~v~~~~~~~--   76 (300)
                      |+.+.++|+|+||+|.+|+.++..|++.|.       +++++++++  ++++....++.+.. . ....++.-..+..  
T Consensus         1 ~~~~~~~vlItGasg~iG~~l~~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   71 (251)
T PRK07231          1 MRLEGKVAIVTGASSGIGEGIARRFAAEGA-------RVVVTDRNE--EAAERVAAEILAGGRAIAVAADVSDEADVEAA   71 (251)
T ss_pred             CCcCCcEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence            666778999999999999999999998875       789998864  33332222222100 0 0000111011111  


Q ss_pred             -----hhcCCCcEEEEeCCCCCCCC----CcH---HHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEecCchhhHHHHHH
Q 022227           77 -----EACTGVNIAVMVGGFPRKEG----MER---KDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILK  142 (300)
Q Consensus        77 -----~a~~~aDvVi~~ag~~~~~g----~~r---~dl~~~N~~i~~~i~~~i~~~~~--~~~~viv~sNP~~~~~~~~~  142 (300)
                           +.+...|+||+++|......    .+.   .+.+..|+.....+.+.+.++..  +...+|++|.....      
T Consensus        72 ~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~------  145 (251)
T PRK07231         72 VAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGL------  145 (251)
T ss_pred             HHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhc------
Confidence                 12346799999998742111    111   33466676654444444443211  12356666653210      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                         .+.+....++.++.-...+...++++++
T Consensus       146 ---~~~~~~~~y~~sk~~~~~~~~~~a~~~~  173 (251)
T PRK07231        146 ---RPRPGLGWYNASKGAVITLTKALAAELG  173 (251)
T ss_pred             ---CCCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence               1122222234444444455566666654

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=98.19  E-value=9.3e-06  Score=74.20  Aligned_cols=166  Identities=14%  Similarity=0.133  Sum_probs=91.9

Q ss_pred             EEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhh----cCCCc
Q 022227            8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA----CTGVN   83 (300)
Q Consensus         8 V~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a----~~~aD   83 (300)
                      |.||||+|++|++++..|...|..      ++.++|......++.    .+....  ....+.........    +.++|
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~------~v~~~~~~~~~~~~~----~~~~~~--~~~d~~~~~~~~~~~~~~~~~~D   68 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGIT------DILVVDNLRDGHKFL----NLADLV--IADYIDKEDFLDRLEKGAFGKIE   68 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCc------eEEEEecCCCchhhh----hhhhee--eeccCcchhHHHHHHhhccCCCC
Confidence            579999999999999999987631      577777643222111    010000  00011111112121    25799


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH---HHHHHCCCCCCCcEEeeehhh
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL---ILKEFAPSIPAKNITCLTRLD  160 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~---~~~~~~~~~p~~~i~~~t~ld  160 (300)
                      +|||+|+.......+.......|+....++++.+.+..   .++|.+|+. .+...   ...+..+-..+...++.++..
T Consensus        69 ~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~v~~SS~-~vy~~~~~~~~e~~~~~~p~~~Y~~sK~~  144 (314)
T TIGR02197        69 AIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKG---IPFIYASSA-ATYGDGEAGFREGRELERPLNVYGYSKFL  144 (314)
T ss_pred             EEEECccccCccccchHHHHHHHHHHHHHHHHHHHHhC---CcEEEEccH-HhcCCCCCCcccccCcCCCCCHHHHHHHH
Confidence            99999987543333445667889999999999998864   356666642 21100   000000001122345556665


Q ss_pred             HHHHHHH-HHH-HcCCCCCCeEEEEEecCCC
Q 022227          161 HNRALGQ-ISE-KLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       161 ~~R~~~~-la~-~l~v~~~~V~~~~V~G~hg  189 (300)
                      ...+... .++ ..+++...++...|+|...
T Consensus       145 ~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~  175 (314)
T TIGR02197       145 FDQYVRRRVLPEALSAQVVGLRYFNVYGPRE  175 (314)
T ss_pred             HHHHHHHHhHhhccCCceEEEEEeeccCCCC
Confidence            5554332 222 3456777788888889763

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.17  E-value=2e-05  Score=72.66  Aligned_cols=104  Identities=21%  Similarity=0.315  Sum_probs=64.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhh----h---hhhhhcc-------CCcccEEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK----M---ELVDAAF-------PLLKGVVA   71 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~----~---dl~~~~~-------~~~~~v~~   71 (300)
                      +||+|+| +|.+|++++..|+..|+       +|+++|.++  +.++...    .   .+.+...       ....++..
T Consensus         3 ~~V~VIG-~G~mG~~iA~~la~~G~-------~V~v~d~~~--~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~   72 (308)
T PRK06129          3 GSVAIIG-AGLIGRAWAIVFARAGH-------EVRLWDADP--AAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV   72 (308)
T ss_pred             cEEEEEC-ccHHHHHHHHHHHHCCC-------eeEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE
Confidence            5899999 79999999999998875       799999864  3332110    0   0111100       11234667


Q ss_pred             eCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        72 ~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      ++++.+++++||+|+.+.  |            .+....+.+.+.+.+..++++  ++.||...
T Consensus        73 ~~~~~~a~~~ad~Vi~av--p------------e~~~~k~~~~~~l~~~~~~~~--ii~ssts~  120 (308)
T PRK06129         73 TDSLADAVADADYVQESA--P------------ENLELKRALFAELDALAPPHA--ILASSTSA  120 (308)
T ss_pred             ECcHHHhhCCCCEEEECC--c------------CCHHHHHHHHHHHHHhCCCcc--eEEEeCCC
Confidence            778888899999999874  1            112233345555666666553  44566543

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=98.17  E-value=8.8e-06  Score=77.53  Aligned_cols=115  Identities=18%  Similarity=0.157  Sum_probs=68.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhh--hhhhhhh--ccC-CcccEEEeCChhhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGV--KMELVDA--AFP-LLKGVVATTDAVEA   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~--~~dl~~~--~~~-~~~~v~~~~~~~~a   78 (300)
                      +.+||.|+||+|++|++++..|+..|+       +|++++.+..  .+...  ..++...  ... ...++.-..+..++
T Consensus        59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-------~V~~l~R~~~--~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~  129 (390)
T PLN02657         59 KDVTVLVVGATGYIGKFVVRELVRRGY-------NVVAVAREKS--GIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKV  129 (390)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEEechh--hccccchhhHHhhhcCCceEEEeeCCCHHHHHHH
Confidence            357999999999999999999998775       7888887531  11100  0011000  000 00111111234455


Q ss_pred             cC----CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           79 CT----GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        79 ~~----~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      ++    ++|+||++++.+....   .+....|.....++++.+++.+-+  ++|++|+
T Consensus       130 ~~~~~~~~D~Vi~~aa~~~~~~---~~~~~vn~~~~~~ll~aa~~~gv~--r~V~iSS  182 (390)
T PLN02657        130 LFSEGDPVDVVVSCLASRTGGV---KDSWKIDYQATKNSLDAGREVGAK--HFVLLSA  182 (390)
T ss_pred             HHHhCCCCcEEEECCccCCCCC---ccchhhHHHHHHHHHHHHHHcCCC--EEEEEee
Confidence            55    5899999887532111   123456788888999998877532  4666664

>PRK12320 hypothetical protein; Provisional

Probab=98.17  E-value=8.7e-06  Score=82.40  Aligned_cols=101  Identities=13%  Similarity=0.151  Sum_probs=65.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+||||+||+|++++..|+..|.       +|+.+|..+.  .......++..      .++.-. ...++++++|+|
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~-------~Vi~ldr~~~--~~~~~~ve~v~------~Dl~d~-~l~~al~~~D~V   64 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGH-------TVSGIAQHPH--DALDPRVDYVC------ASLRNP-VLQELAGEADAV   64 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-------EEEEEeCChh--hcccCCceEEE------ccCCCH-HHHHHhcCCCEE
Confidence            4899999999999999999998774       7888886431  11000000100      111111 234567899999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEec
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA  131 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~s  131 (300)
                      ||+|+...  ..    -...|+....++++.+++.+   +++|++|
T Consensus        65 IHLAa~~~--~~----~~~vNv~Gt~nLleAA~~~G---vRiV~~S  101 (699)
T PRK12320         65 IHLAPVDT--SA----PGGVGITGLAHVANAAARAG---ARLLFVS  101 (699)
T ss_pred             EEcCccCc--cc----hhhHHHHHHHHHHHHHHHcC---CeEEEEE
Confidence            99997531  11    12468899999999998864   4666666

>PRK07856 short chain dehydrogenase; Provisional

Probab=98.16  E-value=1.7e-05  Score=70.36  Aligned_cols=154  Identities=10%  Similarity=0.040  Sum_probs=85.7

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchh----hhhhhhhhhhhhccCCcccEEEeCChh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE----ALNGVKMELVDAAFPLLKGVVATTDAV   76 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~----~l~g~~~dl~~~~~~~~~~v~~~~~~~   76 (300)
                      |+.+.+++.|+||+|.+|..++..|+..|.       +++++|.++...    .......|+.+....  ..+  -....
T Consensus         2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~-------~v~~~~r~~~~~~~~~~~~~~~~D~~~~~~~--~~~--~~~~~   70 (252)
T PRK07856          2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGA-------TVVVCGRRAPETVDGRPAEFHAADVRDPDQV--AAL--VDAIV   70 (252)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCChhhhhcCCceEEEEccCCCHHHH--HHH--HHHHH
Confidence            555678999999999999999999998775       788888764110    000111222221100  000  00011


Q ss_pred             hhcCCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHHHhhhc---CCCeEEEEecCchhhHHHHHHHHCCC
Q 022227           77 EACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHA---APNCKVLVVANPANTNALILKEFAPS  147 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~~~---~~~~~viv~sNP~~~~~~~~~~~~~~  147 (300)
                      +.+...|+||++||.....   ..+   ....+..|+.....+.+.+.++-   ....++|++|+-...         .+
T Consensus        71 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~---------~~  141 (252)
T PRK07856         71 ERHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGR---------RP  141 (252)
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccC---------CC
Confidence            2234569999999864321   111   23456677777766666654321   112467777653321         12


Q ss_pred             CCCCcEEeeehhhHHHHHHHHHHHcCC
Q 022227          148 IPAKNITCLTRLDHNRALGQISEKLNV  174 (300)
Q Consensus       148 ~p~~~i~~~t~ld~~R~~~~la~~l~v  174 (300)
                      .|....++.++.-...+.+.++.+++-
T Consensus       142 ~~~~~~Y~~sK~a~~~l~~~la~e~~~  168 (252)
T PRK07856        142 SPGTAAYGAAKAGLLNLTRSLAVEWAP  168 (252)
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHhcC
Confidence            232234566666666777778887763

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.15  E-value=3.1e-05  Score=67.87  Aligned_cols=103  Identities=14%  Similarity=0.126  Sum_probs=62.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC--CcccEEEeCChhhhcCCCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~--~~~~v~~~~~~~~a~~~aD   83 (300)
                      |||+||||+|.+|++++..|...|.       ++.+++.++  ++++....+..+....  ...++.. ++..++++++|
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~-------~V~v~~r~~--~~~~~l~~~~~~~~~~~g~~~~~~~-~~~~ea~~~aD   70 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGN-------KIIIGSRDL--EKAEEAAAKALEELGHGGSDIKVTG-ADNAEAAKRAD   70 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC-------EEEEEEcCH--HHHHHHHHHHHhhccccCCCceEEE-eChHHHHhcCC
Confidence            5899998689999999999998763       788888853  4454433333221100  0112222 25568899999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      +||++.-.                ..+.++++.+...-. +..+|-++||..
T Consensus        71 vVilavp~----------------~~~~~~l~~l~~~l~-~~vvI~~~ngi~  105 (219)
T TIGR01915        71 VVILAVPW----------------DHVLKTLESLRDELS-GKLVISPVVPLA  105 (219)
T ss_pred             EEEEECCH----------------HHHHHHHHHHHHhcc-CCEEEEeccCce
Confidence            99998521                112233333433322 235778899974

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK07201 short chain dehydrogenase; Provisional

Probab=98.14  E-value=1.3e-05  Score=80.98  Aligned_cols=169  Identities=15%  Similarity=0.161  Sum_probs=90.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHh--cccCCCCCCeEEEEEecCCchhhhhhhhhhhh-hhccCCcccEEE-----eCChhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIAR--GVMLGTDQPVILHMLDIPPAAEALNGVKMELV-DAAFPLLKGVVA-----TTDAVE   77 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~--~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~-~~~~~~~~~v~~-----~~~~~~   77 (300)
                      |||.||||+||+|++++..|+.  .+.       +|++++++.....+........ +.......++.-     .....+
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~-------~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~   73 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREA-------TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIA   73 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCC-------EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHH
Confidence            4899999999999999999984  332       7888887542222221110000 000000011100     001123


Q ss_pred             hcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHC-CCC----CCCc
Q 022227           78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFA-PSI----PAKN  152 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~-~~~----p~~~  152 (300)
                      .++++|+|||+|+.... ..+..+....|+...+++++.+.+...+  +++.+|.. .+....-.... ..+    +...
T Consensus        74 ~l~~~D~Vih~Aa~~~~-~~~~~~~~~~nv~gt~~ll~~a~~~~~~--~~v~~SS~-~v~g~~~~~~~e~~~~~~~~~~~  149 (657)
T PRK07201         74 ELGDIDHVVHLAAIYDL-TADEEAQRAANVDGTRNVVELAERLQAA--TFHHVSSI-AVAGDYEGVFREDDFDEGQGLPT  149 (657)
T ss_pred             HhcCCCEEEECceeecC-CCCHHHHHHHHhHHHHHHHHHHHhcCCC--eEEEEecc-ccccCccCccccccchhhcCCCC
Confidence            34899999999986432 2344566788999999999999887432  45555532 21100000000 000    0012


Q ss_pred             EEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          153 ITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       153 i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      .++.++...+++..   +..+++..-++...|+|.+
T Consensus       150 ~Y~~sK~~~E~~~~---~~~g~~~~ilRp~~v~G~~  182 (657)
T PRK07201        150 PYHRTKFEAEKLVR---EECGLPWRVYRPAVVVGDS  182 (657)
T ss_pred             chHHHHHHHHHHHH---HcCCCcEEEEcCCeeeecC
Confidence            24445555544332   2356776777776777854

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=98.14  E-value=4e-05  Score=67.26  Aligned_cols=152  Identities=15%  Similarity=0.209  Sum_probs=81.0

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChh-----
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAV-----   76 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~-----   76 (300)
                      +++.+++.|+||+|++|+.++..|++.|.       .+.+.+.+.  ++++....++.........++.-..+..     
T Consensus         3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~-------~v~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   73 (245)
T PRK12936          3 DLSGRKALVTGASGGIGEEIARLLHAQGA-------IVGLHGTRV--EKLEALAAELGERVKIFPANLSDRDEVKALGQK   73 (245)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHhCCceEEEEccCCCHHHHHHHHHH
Confidence            34567999999999999999999998874       577777642  3333222221100000000110000111     


Q ss_pred             --hhcCCCcEEEEeCCCCCCC---C---CcHHHHHHhhHHHHHHHHHHHhhh---cCCCeEEEEecCchhhHHHHHHHHC
Q 022227           77 --EACTGVNIAVMVGGFPRKE---G---MERKDVMSKNVSIYKAQASALEQH---AAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        77 --~a~~~aDvVi~~ag~~~~~---g---~~r~dl~~~N~~i~~~i~~~i~~~---~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                        +.+...|+||++||.....   .   ++-.+.+..|+.....+++.+.+.   .. ...+|++|+....         
T Consensus        74 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~---------  143 (245)
T PRK12936         74 AEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRR-YGRIINITSVVGV---------  143 (245)
T ss_pred             HHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhC-CCEEEEECCHHhC---------
Confidence              1245689999999874321   1   122345667777665555554322   12 2357777764431         


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                      .+.|....++.++.....+.+.+++++
T Consensus       144 ~~~~~~~~Y~~sk~a~~~~~~~la~~~  170 (245)
T PRK12936        144 TGNPGQANYCASKAGMIGFSKSLAQEI  170 (245)
T ss_pred             cCCCCCcchHHHHHHHHHHHHHHHHHh
Confidence            122322345555555555666666664

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=98.13  E-value=4.9e-05  Score=67.53  Aligned_cols=153  Identities=18%  Similarity=0.122  Sum_probs=85.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhh-----
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE-----   77 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~-----   77 (300)
                      .+.+++.|+||+|++|.+++..|++.|.       +++++|.+.  ++++....++.........++.-..+..+     
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   74 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGA-------RVVIADIKP--ARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAA   74 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEcCCH--HHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHH
Confidence            3556899999999999999999998875       788998864  33332222221110000011111111112     


Q ss_pred             --hcCCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHHHhhhc---CCCeEEEEecCchhhHHHHHHHHCC
Q 022227           78 --ACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHA---APNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        78 --a~~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~~~---~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                        .+...|++|++||.....   ..+   -.+.+..|+.....+.+.+.++-   .++.++|++|.....         .
T Consensus        75 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~---------~  145 (257)
T PRK07067         75 VERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGR---------R  145 (257)
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhC---------C
Confidence              234689999999864311   111   23346678777777776664431   112457777653321         1


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      +.|....++.++.....+.+.+++.+.
T Consensus       146 ~~~~~~~Y~~sK~a~~~~~~~la~e~~  172 (257)
T PRK07067        146 GEALVSHYCATKAAVISYTQSAALALI  172 (257)
T ss_pred             CCCCCchhhhhHHHHHHHHHHHHHHhc
Confidence            223333466666666666777777654

>PLN02253 xanthoxin dehydrogenase

Probab=98.13  E-value=3.8e-05  Score=69.20  Aligned_cols=154  Identities=15%  Similarity=0.087  Sum_probs=84.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc-c-CCcccEEEeCChhhhc--
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-F-PLLKGVVATTDAVEAC--   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~-~-~~~~~v~~~~~~~~a~--   79 (300)
                      +.+++.||||+|.+|.+++..|+..|.       +++++|.++  +.++....++.... . ....++.-..+..+++  
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~-------~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   87 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA-------KVCIVDLQD--DLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDF   87 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHH
Confidence            346899999999999999999998875       788998753  22222222221100 0 0001111111122222  


Q ss_pred             -----CCCcEEEEeCCCCCCC-----CCcH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCchhhHHHHHHHH
Q 022227           80 -----TGVNIAVMVGGFPRKE-----GMER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        80 -----~~aDvVi~~ag~~~~~-----g~~r---~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                           ...|++|+.||.....     ..+.   ...+..|+.....+.+.+.+.-  .+...++++++....        
T Consensus        88 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~--------  159 (280)
T PLN02253         88 TVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASA--------  159 (280)
T ss_pred             HHHHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhc--------
Confidence                 3689999999875321     1121   3456677666555554443221  012356776654321        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcCCC
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLNVQ  175 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~  175 (300)
                       .+.|....|+.++.-...+.+.++++++-.
T Consensus       160 -~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~  189 (280)
T PLN02253        160 -IGGLGPHAYTGSKHAVLGLTRSVAAELGKH  189 (280)
T ss_pred             -ccCCCCcccHHHHHHHHHHHHHHHHHhhhc
Confidence             122222356777777778888888887643

>PRK07806 short chain dehydrogenase; Provisional

Probab=98.12  E-value=8.5e-06  Score=71.95  Aligned_cols=169  Identities=17%  Similarity=0.147  Sum_probs=88.4

Q ss_pred             CC-CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh
Q 022227            1 MA-KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV   76 (300)
Q Consensus         1 m~-~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~   76 (300)
                      |+ ++.+++.|+||+|++|.+++..|+..|.       ++++++++.. +.++....++......   ...++.-..+..
T Consensus         1 ~~~~~~k~vlItGasggiG~~l~~~l~~~G~-------~V~~~~r~~~-~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~   72 (248)
T PRK07806          1 MGDLPGKTALVTGSSRGIGADTAKILAGAGA-------HVVVNYRQKA-PRANKVVAEIEAAGGRASAVGADLTDEESVA   72 (248)
T ss_pred             CCCCCCcEEEEECCCCcHHHHHHHHHHHCCC-------EEEEEeCCch-HhHHHHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence            54 3557899999999999999999998774       6777776431 2222222222211000   001111111111


Q ss_pred             h-------hcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCC
Q 022227           77 E-------ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIP  149 (300)
Q Consensus        77 ~-------a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p  149 (300)
                      .       .+.+.|+||+.||.......+..+.+..|......+++.+.++..+..++|++|.....   ..... ...|
T Consensus        73 ~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~---~~~~~-~~~~  148 (248)
T PRK07806         73 ALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAH---FIPTV-KTMP  148 (248)
T ss_pred             HHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhh---cCccc-cCCc
Confidence            1       12468999999876432222223445677777777877777653323467777653211   00000 1122


Q ss_pred             CCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEE
Q 022227          150 AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI  183 (300)
Q Consensus       150 ~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~  183 (300)
                      ....++.++.-...+.+.++.++.  +..|+...
T Consensus       149 ~~~~Y~~sK~a~e~~~~~l~~~~~--~~~i~v~~  180 (248)
T PRK07806        149 EYEPVARSKRAGEDALRALRPELA--EKGIGFVV  180 (248)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhh--ccCeEEEE
Confidence            111244566666666666666553  34566444

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=98.11  E-value=1.1e-05  Score=73.90  Aligned_cols=169  Identities=15%  Similarity=0.085  Sum_probs=93.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh-cc-CCcccEEEeCChhhhcC--CC
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AF-PLLKGVVATTDAVEACT--GV   82 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~-~~-~~~~~v~~~~~~~~a~~--~a   82 (300)
                      ||.|+||+|++|+.++..|++.+.       +++++|.... .... ....+... .. ....++.-..+..++++  +.
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~-------~V~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   71 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH-------EVVVLDNLSN-GSPE-ALKRGERITRVTFVEGDLRDRELLDRLFEEHKI   71 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC-------eEEEEeCCCc-cchh-hhhhhccccceEEEECCCCCHHHHHHHHHhCCC
Confidence            689999999999999999998764       6777775321 1111 00011100 00 00001111112334443  68


Q ss_pred             cEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCCcEEee
Q 022227           83 NIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCL  156 (300)
Q Consensus        83 DvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~~i~~~  156 (300)
                      |+||++||.....  ..+..+.+..|+.....+++.+.+.+. . .++++|. ......    ...+. ....+...++.
T Consensus        72 d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~-~~v~~ss-~~~~g~~~~~~~~e~-~~~~~~~~y~~  147 (328)
T TIGR01179        72 DAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGV-K-KFIFSSS-AAVYGEPSSIPISED-SPLGPINPYGR  147 (328)
T ss_pred             cEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCC-C-EEEEecc-hhhcCCCCCCCcccc-CCCCCCCchHH
Confidence            9999999865322  123345677899999999999887753 2 4555543 211000    00000 00111234566


Q ss_pred             ehhhHHHHHHHHHHH-cCCCCCCeEEEEEecCC
Q 022227          157 TRLDHNRALGQISEK-LNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       157 t~ld~~R~~~~la~~-l~v~~~~V~~~~V~G~h  188 (300)
                      ++...+++...+++. .+++..-++...|+|.+
T Consensus       148 sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~  180 (328)
T TIGR01179       148 SKLMSERILRDLSKADPGLSYVILRYFNVAGAD  180 (328)
T ss_pred             HHHHHHHHHHHHHHhccCCCEEEEecCcccCCC
Confidence            666666666666666 67787778766677864

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK12746 short chain dehydrogenase; Provisional

Probab=98.11  E-value=0.0001  Score=65.20  Aligned_cols=155  Identities=14%  Similarity=0.112  Sum_probs=82.1

Q ss_pred             CCC-CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEE-ecCCchhhhhhhhhhhhhhccC---CcccEEEeCCh
Q 022227            1 MAK-EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMELVDAAFP---LLKGVVATTDA   75 (300)
Q Consensus         1 m~~-~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~-D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~   75 (300)
                      |++ +.++|.|+||+|++|++++..|++.|.       ++.+. +.+  .++++....++......   ...++.-..+.
T Consensus         1 ~~~~~~~~ilItGasg~iG~~la~~l~~~G~-------~v~i~~~r~--~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i   71 (254)
T PRK12746          1 MKNLDGKVALVTGASRGIGRAIAMRLANDGA-------LVAIHYGRN--KQAADETIREIESNGGKAFLIEADLNSIDGV   71 (254)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCC--HHHHHHHHHHHHhcCCcEEEEEcCcCCHHHH
Confidence            543 457999999999999999999998764       56554 333  23332222222110000   00111111111


Q ss_pred             hhhc-------------CCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh
Q 022227           76 VEAC-------------TGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT  136 (300)
Q Consensus        76 ~~a~-------------~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~  136 (300)
                      .+++             .+.|+||++||......   .+.   ...+..|+.....+.+.+.++..+...++++|.....
T Consensus        72 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~  151 (254)
T PRK12746         72 KKLVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVR  151 (254)
T ss_pred             HHHHHHHHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhc
Confidence            1112             25899999998753211   121   2345678887777777776643222356666654321


Q ss_pred             HHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       137 ~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                               .+.|....++.++.-...+.+.++++++
T Consensus       152 ---------~~~~~~~~Y~~sK~a~~~~~~~~~~~~~  179 (254)
T PRK12746        152 ---------LGFTGSIAYGLSKGALNTMTLPLAKHLG  179 (254)
T ss_pred             ---------CCCCCCcchHhhHHHHHHHHHHHHHHHh
Confidence                     1222222355566555566666676654

>PRK05717 oxidoreductase; Validated

Probab=98.10  E-value=3.3e-05  Score=68.62  Aligned_cols=152  Identities=16%  Similarity=0.108  Sum_probs=85.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCCh-------hh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDA-------VE   77 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~-------~~   77 (300)
                      .++|.||||+|++|++++..|++.|.       +++++|.++  +++.....++.........++.-..+.       .+
T Consensus        10 ~k~vlItG~sg~IG~~~a~~l~~~g~-------~v~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   80 (255)
T PRK05717         10 GRVALVTGAARGIGLGIAAWLIAEGW-------QVVLADLDR--ERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLG   80 (255)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCC-------EEEEEcCCH--HHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            36799999999999999999998764       788888753  222211111110000000011100011       11


Q ss_pred             hcCCCcEEEEeCCCCCCC-----CCcH---HHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEecCchhhHHHHHHHHCCCC
Q 022227           78 ACTGVNIAVMVGGFPRKE-----GMER---KDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALILKEFAPSI  148 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~-----g~~r---~dl~~~N~~i~~~i~~~i~~~~-~~~~~viv~sNP~~~~~~~~~~~~~~~  148 (300)
                      .+...|++|++||.....     ..+.   .+.+..|+.....+.+.+.++- .+...+|++|+....         .+.
T Consensus        81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~---------~~~  151 (255)
T PRK05717         81 QFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRAR---------QSE  151 (255)
T ss_pred             HhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhc---------CCC
Confidence            123579999999875321     1122   3456788887778877776431 112356777654321         122


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHcCC
Q 022227          149 PAKNITCLTRLDHNRALGQISEKLNV  174 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l~v  174 (300)
                      |....++.++.-...+.+.++++++-
T Consensus       152 ~~~~~Y~~sKaa~~~~~~~la~~~~~  177 (255)
T PRK05717        152 PDTEAYAASKGGLLALTHALAISLGP  177 (255)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHhcC
Confidence            32234667776666778888888763

>PRK06180 short chain dehydrogenase; Provisional

Probab=98.10  E-value=6.6e-05  Score=67.70  Aligned_cols=151  Identities=13%  Similarity=0.083  Sum_probs=79.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhh-----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA-----   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a-----   78 (300)
                      +.++|.||||+|++|++++..|+..|.       +|++++.++  ++++...............++.-..+..++     
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~   73 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGH-------RVVGTVRSE--AARADFEALHPDRALARLLDVTDFDAIDAVVADAE   73 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcC-------EEEEEeCCH--HHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHH
Confidence            346899999999999999999998774       788888853  333211110000000000011000111122     


Q ss_pred             --cCCCcEEEEeCCCCCC---CCCcH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCchhhHHHHHHHHCCCC
Q 022227           79 --CTGVNIAVMVGGFPRK---EGMER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAPSI  148 (300)
Q Consensus        79 --~~~aDvVi~~ag~~~~---~g~~r---~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~~~~~~~~~~~~~~~  148 (300)
                        +...|+||++||....   ...+.   .+.+..|+.....+.+.+.++.  .+..++|++|+-...         .+.
T Consensus        74 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~---------~~~  144 (277)
T PRK06180         74 ATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGL---------ITM  144 (277)
T ss_pred             HHhCCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEeccccc---------CCC
Confidence              2358999999987431   11222   2346778877777776644321  112357777653321         122


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHc
Q 022227          149 PAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                      |....++.++.-...+...++.++
T Consensus       145 ~~~~~Y~~sK~a~~~~~~~la~e~  168 (277)
T PRK06180        145 PGIGYYCGSKFALEGISESLAKEV  168 (277)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHh
Confidence            333345555554445555566554

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=98.10  E-value=7.9e-06  Score=74.40  Aligned_cols=169  Identities=17%  Similarity=0.160  Sum_probs=100.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhh--hhhhhhhccCCcccEEE-eC------Ch
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGV--KMELVDAAFPLLKGVVA-TT------DA   75 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~--~~dl~~~~~~~~~~v~~-~~------~~   75 (300)
                      +.+|.||||+|+||+|.+..|+.+|+       +++.+|...+ ..+...  ...+.+.    ...+.. ..      .+
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy-------~v~~vDNl~n-~~~~sl~r~~~l~~~----~~~v~f~~~Dl~D~~~L   69 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGY-------GVVIVDNLNN-SYLESLKRVRQLLGE----GKSVFFVEGDLNDAEAL   69 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCC-------cEEEEecccc-cchhHHHHHHHhcCC----CCceEEEEeccCCHHHH
Confidence            46899999999999999999999987       7889997432 112111  1111111    011111 01      12


Q ss_pred             hhhcC--CCcEEEEeCCCCC-CCC-CcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH---H-HHHHHCCC
Q 022227           76 VEACT--GVNIAVMVGGFPR-KEG-MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA---L-ILKEFAPS  147 (300)
Q Consensus        76 ~~a~~--~aDvVi~~ag~~~-~~g-~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~---~-~~~~~~~~  147 (300)
                      ++-|+  .-|-|+|.|+..+ .+. +.+......|+-.+.++.+.++++.-   +-+|.+.++.+--   . -+.+..+-
T Consensus        70 ~kvF~~~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~---~~~V~sssatvYG~p~~ip~te~~~t  146 (343)
T KOG1371|consen   70 EKLFSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNV---KALVFSSSATVYGLPTKVPITEEDPT  146 (343)
T ss_pred             HHHHhhcCCceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCC---ceEEEecceeeecCcceeeccCcCCC
Confidence            22222  3589999887643 122 34566778899999999999999853   3455554443110   0 01111111


Q ss_pred             CCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       148 ~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      --+.+.++-|....+.+...+-+.++.....+|.+.+.|.|
T Consensus       147 ~~p~~pyg~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~  187 (343)
T KOG1371|consen  147 DQPTNPYGKTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAH  187 (343)
T ss_pred             CCCCCcchhhhHHHHHHHHhhhccccceEEEEEeccccCcc
Confidence            11234567777777777777777777778888888777744

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=98.10  E-value=2.4e-05  Score=68.53  Aligned_cols=152  Identities=19%  Similarity=0.163  Sum_probs=80.5

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE   77 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~   77 (300)
                      |+++.++|+|+||+|++|..++..|+++|.       ++.+++.++  ++++....++......   ...++.-..+..+
T Consensus         1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~   71 (246)
T PRK05653          1 MSLQGKTALVTGASRGIGRAIALRLAADGA-------KVVIYDSNE--EAAEALAAELRAAGGEARVLVFDVSDEAAVRA   71 (246)
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCh--hHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence            667778999999999999999999998875       688888764  3332222222211000   0001000001111


Q ss_pred             -------hcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEecCchhhHHHH
Q 022227           78 -------ACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        78 -------a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~----~~~~~~~~viv~sNP~~~~~~~  140 (300)
                             .+...|.||+++|.....   ..+.   .+.+..|+.....+.+.+.    +...  .++|++|.-...    
T Consensus        72 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~--~~ii~~ss~~~~----  145 (246)
T PRK05653         72 LIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARY--GRIVNISSVSGV----  145 (246)
T ss_pred             HHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--cEEEEECcHHhc----
Confidence                   234569999998763221   1122   2346677777776666664    3322  256666542210    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                           .+.+...-++.++.....+...+++.+
T Consensus       146 -----~~~~~~~~y~~sk~~~~~~~~~l~~~~  172 (246)
T PRK05653        146 -----TGNPGQTNYSAAKAGVIGFTKALALEL  172 (246)
T ss_pred             -----cCCCCCcHhHhHHHHHHHHHHHHHHHH
Confidence                 112212223444544455566666654

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.09  E-value=5.4e-05  Score=66.83  Aligned_cols=157  Identities=14%  Similarity=0.055  Sum_probs=82.7

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc-
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC-   79 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~-   79 (300)
                      |..+.++|.||||+|++|++++..|+..|.       ++++.+.+. .++++....++.........++.-..+..+++ 
T Consensus         1 ~~l~~k~ilItGas~gIG~~la~~l~~~G~-------~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   72 (253)
T PRK08642          1 MQISEQTVLVTGGSRGLGAAIARAFAREGA-------RVVVNYHQS-EDAAEALADELGDRAIALQADVTDREQVQAMFA   72 (253)
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHHHHCCC-------eEEEEcCCC-HHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHH
Confidence            555667899999999999999999998775       566654432 22222111111100000000110011112222 


Q ss_pred             ------CC-CcEEEEeCCCCC-------CC--CCcH---HHHHHhhHHHHHHHHHHHhhh--cCCCeEEEEecCchhhHH
Q 022227           80 ------TG-VNIAVMVGGFPR-------KE--GMER---KDVMSKNVSIYKAQASALEQH--AAPNCKVLVVANPANTNA  138 (300)
Q Consensus        80 ------~~-aDvVi~~ag~~~-------~~--g~~r---~dl~~~N~~i~~~i~~~i~~~--~~~~~~viv~sNP~~~~~  138 (300)
                            .. .|++|+.||...       .+  ..+.   .+.+..|+.....+.+.+.++  ..+...++++++....  
T Consensus        73 ~~~~~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~--  150 (253)
T PRK08642         73 TATEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQ--  150 (253)
T ss_pred             HHHHHhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCcccc--
Confidence                  23 899999997521       11  1122   234666766555555554321  0112467777654320  


Q ss_pred             HHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCC
Q 022227          139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNV  174 (300)
Q Consensus       139 ~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v  174 (300)
                             ...++...|+.++.-...+.+.+|+.++-
T Consensus       151 -------~~~~~~~~Y~~sK~a~~~l~~~la~~~~~  179 (253)
T PRK08642        151 -------NPVVPYHDYTTAKAALLGLTRNLAAELGP  179 (253)
T ss_pred             -------CCCCCccchHHHHHHHHHHHHHHHHHhCc
Confidence                   11222235677777777888888887753

>PRK06500 short chain dehydrogenase; Provisional

Probab=98.08  E-value=3.1e-05  Score=68.17  Aligned_cols=152  Identities=14%  Similarity=0.138  Sum_probs=83.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeC-------Ch
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT-------DA   75 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~-------~~   75 (300)
                      ++.++|.|+||+|++|++++..|+..|.       ++++++.++  +.++....++.........++.-..       ..
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   74 (249)
T PRK06500          4 LQGKTALITGGTSGIGLETARQFLAEGA-------RVAITGRDP--ASLEAARAELGESALVIRADAGDVAAQKALAQAL   74 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEecCCH--HHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHH
Confidence            3457999999999999999999998875       688888753  3332211111100000000000000       01


Q ss_pred             hhhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCC
Q 022227           76 VEACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIP  149 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p  149 (300)
                      .+.+...|++|+.||.....   ..+.   ...+..|+.....+.+.+.++-.....+++++.....         .+.|
T Consensus        75 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~---------~~~~  145 (249)
T PRK06500         75 AEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAH---------IGMP  145 (249)
T ss_pred             HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhc---------cCCC
Confidence            22235689999999874321   1122   3456788888888888776531112345665543321         1223


Q ss_pred             CCcEEeeehhhHHHHHHHHHHHc
Q 022227          150 AKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       150 ~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                      ....++.++.-...+.+.+++++
T Consensus       146 ~~~~Y~~sK~a~~~~~~~la~e~  168 (249)
T PRK06500        146 NSSVYAASKAALLSLAKTLSGEL  168 (249)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHh
Confidence            23345556655556666666665

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=98.07  E-value=7.2e-05  Score=66.38  Aligned_cols=157  Identities=17%  Similarity=0.149  Sum_probs=82.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC---cccEEEeCChhh---
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAVE---   77 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~---~~~v~~~~~~~~---   77 (300)
                      +.+++.|+||+|++|++++..|++.|.       ++++++.++  +.++....++.+.....   ..++.-.....+   
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~   76 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGA-------AVAIADLNQ--DGANAVADEINKAGGKAIGVAMDVTNEDAVNAGID   76 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-------eEEEEeCCh--HHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHH
Confidence            457899999999999999999998875       688888864  33332222232211000   001000001111   


Q ss_pred             ----hcCCCcEEEEeCCCCCCC---C---CcHHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           78 ----ACTGVNIAVMVGGFPRKE---G---MERKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        78 ----a~~~aDvVi~~ag~~~~~---g---~~r~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                          .+...|+||+++|.....   .   +.-.+.+..|+..    ++.+.+.+.+... ..+++++|.-..       .
T Consensus        77 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-~~~iv~~ss~~~-------~  148 (262)
T PRK13394         77 KVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDR-GGVVIYMGSVHS-------H  148 (262)
T ss_pred             HHHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-CcEEEEEcchhh-------c
Confidence                223589999999874211   1   1123445567766    6666666622222 235666654211       0


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEE
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN  181 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~  181 (300)
                        .+.|....++.++.....+.+.+++++  .+..++.
T Consensus       149 --~~~~~~~~y~~sk~a~~~~~~~la~~~--~~~~i~v  182 (262)
T PRK13394        149 --EASPLKSAYVTAKHGLLGLARVLAKEG--AKHNVRS  182 (262)
T ss_pred             --CCCCCCcccHHHHHHHHHHHHHHHHHh--hhcCeEE
Confidence              122333345655555555556666664  2334553

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=98.07  E-value=5.7e-05  Score=66.91  Aligned_cols=148  Identities=14%  Similarity=0.110  Sum_probs=78.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCCh-------hhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDA-------VEA   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~-------~~a   78 (300)
                      |+|.|+||+|.+|..++..|+..|.       +++++++++  ++++....++.........++.-..+.       .+.
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~   71 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH-------KVIATGRRQ--ERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAE   71 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHH
Confidence            4899999999999999999998774       788998863  333322111110000000011000011       122


Q ss_pred             cCCCcEEEEeCCCCC--CC--CCcH---HHHHHhhHHHHHHHHH----HHhhhcCCCeEEEEecCchhhHHHHHHHHCCC
Q 022227           79 CTGVNIAVMVGGFPR--KE--GMER---KDVMSKNVSIYKAQAS----ALEQHAAPNCKVLVVANPANTNALILKEFAPS  147 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~--~~--g~~r---~dl~~~N~~i~~~i~~----~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~  147 (300)
                      +.+.|+||+.||...  .+  ..+.   .+.+..|......+.+    .+.+..  ...++++|.....         .+
T Consensus        72 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~---------~~  140 (248)
T PRK10538         72 WRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN--HGHIINIGSTAGS---------WP  140 (248)
T ss_pred             cCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEECCcccC---------CC
Confidence            347999999998642  11  1122   3346667666444444    444332  2356777653321         12


Q ss_pred             CCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          148 IPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       148 ~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ++....++.++.-...+...+++.++
T Consensus       141 ~~~~~~Y~~sK~~~~~~~~~l~~~~~  166 (248)
T PRK10538        141 YAGGNVYGATKAFVRQFSLNLRTDLH  166 (248)
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHhc
Confidence            23223455555555556666776654

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=98.06  E-value=2.8e-05  Score=69.40  Aligned_cols=156  Identities=19%  Similarity=0.156  Sum_probs=82.6

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhh---
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE---   77 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~---   77 (300)
                      |+++.+++.|+||+|.+|++++..|++.|.       +|+++|.++  ++++...............++.-..+..+   
T Consensus         1 m~~~~k~vlItGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~   71 (262)
T TIGR03325         1 MRLKGEVVLVTGGASGLGRAIVDRFVAEGA-------RVAVLDKSA--AGLQELEAAHGDAVVGVEGDVRSLDDHKEAVA   71 (262)
T ss_pred             CCcCCcEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHhhcCCceEEEEeccCCHHHHHHHHH
Confidence            766778999999999999999999998875       788888753  33322111110000000011110111112   


Q ss_pred             ----hcCCCcEEEEeCCCCCC--C--CCc-------HHHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEecCchhhHHHHH
Q 022227           78 ----ACTGVNIAVMVGGFPRK--E--GME-------RKDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALIL  141 (300)
Q Consensus        78 ----a~~~aDvVi~~ag~~~~--~--g~~-------r~dl~~~N~~i~~~i~~~i~~~~-~~~~~viv~sNP~~~~~~~~  141 (300)
                          .+...|++|++||....  +  ..+       -...+..|+.....+.+.+.+.- .++..+|+++.....     
T Consensus        72 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~-----  146 (262)
T TIGR03325        72 RCVAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGF-----  146 (262)
T ss_pred             HHHHHhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEecccee-----
Confidence                23467999999986421  1  111       12345566655555555444321 111235555432211     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNV  174 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v  174 (300)
                        . + .+....++.++.-...+.+.+|++++-
T Consensus       147 --~-~-~~~~~~Y~~sKaa~~~l~~~la~e~~~  175 (262)
T TIGR03325       147 --Y-P-NGGGPLYTAAKHAVVGLVKELAFELAP  175 (262)
T ss_pred             --c-C-CCCCchhHHHHHHHHHHHHHHHHhhcc
Confidence              1 1 121224566666667778888888763

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=98.06  E-value=0.00019  Score=63.22  Aligned_cols=160  Identities=16%  Similarity=0.172  Sum_probs=102.2

Q ss_pred             CCC-CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhh-hccCCcccEEEeC-----
Q 022227            1 MAK-EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD-AAFPLLKGVVATT-----   73 (300)
Q Consensus         1 m~~-~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~-~~~~~~~~v~~~~-----   73 (300)
                      |+. +.+-+.||||++-+|..++..|.+.|.       .++|..+.  .++|+..+.++.+ ...+..-+++-..     
T Consensus         1 m~~~~~kv~lITGASSGiG~A~A~~l~~~G~-------~vvl~aRR--~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~   71 (246)
T COG4221           1 MTTLKGKVALITGASSGIGEATARALAEAGA-------KVVLAARR--EERLEALADEIGAGAALALALDVTDRAAVEAA   71 (246)
T ss_pred             CCCCCCcEEEEecCcchHHHHHHHHHHHCCC-------eEEEEecc--HHHHHHHHHhhccCceEEEeeccCCHHHHHHH
Confidence            444 345678999999999999999999886       79999986  4788877777764 1111111221111     


Q ss_pred             --ChhhhcCCCcEEEEeCCCCCCCCC---c---HHHHHHhhHHHHHHHH----HHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           74 --DAVEACTGVNIAVMVGGFPRKEGM---E---RKDVMSKNVSIYKAQA----SALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        74 --~~~~a~~~aDvVi~~ag~~~~~g~---~---r~dl~~~N~~i~~~i~----~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                        ...+.+...|++|.-||..+....   +   -..+++.|++.+....    +.+.+..  ..-+|+.++=..      
T Consensus        72 i~~~~~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~--~G~IiN~~SiAG------  143 (246)
T COG4221          72 IEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERK--SGHIINLGSIAG------  143 (246)
T ss_pred             HHHHHHhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcC--CceEEEeccccc------
Confidence              234556789999999998654211   1   2356788887665554    4455543  336788775332      


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEE
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV  182 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~  182 (300)
                       +  ..+|...+|+.|+--...|...|.+.+.  ...|+-.
T Consensus       144 -~--~~y~~~~vY~ATK~aV~~fs~~LR~e~~--g~~IRVt  179 (246)
T COG4221         144 -R--YPYPGGAVYGATKAAVRAFSLGLRQELA--GTGIRVT  179 (246)
T ss_pred             -c--ccCCCCccchhhHHHHHHHHHHHHHHhc--CCCeeEE
Confidence             2  2367677999988776666555555443  4555533

>PRK12937 short chain dehydrogenase; Provisional

Probab=98.05  E-value=8.4e-05  Score=65.28  Aligned_cols=156  Identities=13%  Similarity=0.123  Sum_probs=83.2

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE   77 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~   77 (300)
                      |..+.++|.||||+|.+|++++..|++.|.       +++++..+. .+.++....++......   ...++.-..+..+
T Consensus         1 ~~~~~~~vlItG~~~~iG~~la~~l~~~g~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~   72 (245)
T PRK12937          1 MTLSNKVAIVTGASRGIGAAIARRLAADGF-------AVAVNYAGS-AAAADELVAEIEAAGGRAIAVQADVADAAAVTR   72 (245)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEecCCC-HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence            555667999999999999999999998875       566665532 22222222222211100   0001110111222


Q ss_pred             h-------cCCCcEEEEeCCCCCCC---CC---cHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           78 A-------CTGVNIAVMVGGFPRKE---GM---ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        78 a-------~~~aDvVi~~ag~~~~~---g~---~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                      +       +...|+||+.||.....   ..   +-...+..|+.....+.+.+.+.-.+..+++++|.....        
T Consensus        73 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~--------  144 (245)
T PRK12937         73 LFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIA--------  144 (245)
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeecccc--------
Confidence            2       23689999999864311   11   122346677776666666555442223456766643210        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                       ...|....++.++.-...+...+++++.
T Consensus       145 -~~~~~~~~Y~~sK~a~~~~~~~~a~~~~  172 (245)
T PRK12937        145 -LPLPGYGPYAASKAAVEGLVHVLANELR  172 (245)
T ss_pred             -CCCCCCchhHHHHHHHHHHHHHHHHHhh
Confidence             1233333456665555556666676654

>PRK08278 short chain dehydrogenase; Provisional

Probab=98.05  E-value=7.1e-05  Score=67.48  Aligned_cols=164  Identities=16%  Similarity=0.144  Sum_probs=89.9

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchh-----hhhhhhhhhhhhccC---CcccEEEe
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE-----ALNGVKMELVDAAFP---LLKGVVAT   72 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~-----~l~g~~~dl~~~~~~---~~~~v~~~   72 (300)
                      |.++.+++.|+||+|++|++++..|++.|.       ++++++.+....     .++..+.++......   ...++.-.
T Consensus         2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~   74 (273)
T PRK08278          2 MSLSGKTLFITGASRGIGLAIALRAARDGA-------NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDE   74 (273)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCH
Confidence            345567899999999999999999998875       788888753210     122122222211000   00111111


Q ss_pred             CChhhh-------cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCchhhH
Q 022227           73 TDAVEA-------CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTN  137 (300)
Q Consensus        73 ~~~~~a-------~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~~~~  137 (300)
                      .+..+.       +...|++|++||.....   ..+.   ...++.|+.....+.+.+..+-  .....++++|.+... 
T Consensus        75 ~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~-  153 (273)
T PRK08278         75 DQVAAAVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNL-  153 (273)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhc-
Confidence            111222       23689999999874321   1222   2345567665555555554321  013456776654321 


Q ss_pred             HHHHHHHCCC-CCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEE
Q 022227          138 ALILKEFAPS-IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN  181 (300)
Q Consensus       138 ~~~~~~~~~~-~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~  181 (300)
                            . +. +|....++.++.-..++...++++++  +..|+.
T Consensus       154 ------~-~~~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v  189 (273)
T PRK08278        154 ------D-PKWFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAV  189 (273)
T ss_pred             ------c-ccccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence                  1 11 13334577788777888888888876  344553

>PRK07774 short chain dehydrogenase; Provisional

Probab=98.05  E-value=7.4e-05  Score=65.92  Aligned_cols=150  Identities=22%  Similarity=0.182  Sum_probs=82.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh---
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV---   76 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~---   76 (300)
                      .+.++++|+||+|++|.+++..|++.|.       +++++|.++  +.++....++.+....   ...++.-..+..   
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~-------~vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~   74 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALAREGA-------SVVVADINA--EGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMA   74 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence            3567899999999999999999998774       788998863  2332222222221100   001111000111   


Q ss_pred             ----hhcCCCcEEEEeCCCCCC----C--CCcH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCchhhHHHHH
Q 022227           77 ----EACTGVNIAVMVGGFPRK----E--GMER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALIL  141 (300)
Q Consensus        77 ----~a~~~aDvVi~~ag~~~~----~--g~~r---~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~~~~~~~~  141 (300)
                          +.+...|+||++||....    +  ..+.   .+.+..|+.....+.+.+.++-  .+..+++++|+-..      
T Consensus        75 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~------  148 (250)
T PRK07774         75 DATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAA------  148 (250)
T ss_pred             HHHHHHhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccc------
Confidence                122468999999987421    1  1122   2345677776666666655442  11235677664221      


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                            +++...++.++.....+.+.+++++.
T Consensus       149 ------~~~~~~Y~~sK~a~~~~~~~l~~~~~  174 (250)
T PRK07774        149 ------WLYSNFYGLAKVGLNGLTQQLARELG  174 (250)
T ss_pred             ------cCCccccHHHHHHHHHHHHHHHHHhC
Confidence                  11123455566555566667777664

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=98.04  E-value=7.1e-05  Score=66.43  Aligned_cols=151  Identities=18%  Similarity=0.173  Sum_probs=81.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh-----
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV-----   76 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~-----   76 (300)
                      .++|.|+||+|++|..++..|+..|.       +|++.|.++  ++++....++.+....   ...++.-..+..     
T Consensus        10 ~k~vlItGa~g~iG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~   80 (255)
T PRK07523         10 GRRALVTGSSQGIGYALAEGLAQAGA-------EVILNGRDP--AKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDA   80 (255)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHH
Confidence            46899999999999999999998875       788888863  3333322223221000   000110000111     


Q ss_pred             --hhcCCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEecCchhhHHHHHHHHCC
Q 022227           77 --EACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        77 --~a~~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~~~~--~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                        +.+...|++|+.+|.....   ..+   -.+.+..|+.....+.+.+.++..  +..++|++|+....         .
T Consensus        81 ~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~---------~  151 (255)
T PRK07523         81 FEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSA---------L  151 (255)
T ss_pred             HHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhc---------c
Confidence              2234579999999875311   111   133466787766666666554421  12367777764321         1


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ..|....++.++.....+.+.++.++.
T Consensus       152 ~~~~~~~y~~sK~a~~~~~~~~a~e~~  178 (255)
T PRK07523        152 ARPGIAPYTATKGAVGNLTKGMATDWA  178 (255)
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHhh
Confidence            122222345555555555666666553

>PRK08264 short chain dehydrogenase; Validated

Probab=98.04  E-value=3.6e-05  Score=67.47  Aligned_cols=147  Identities=22%  Similarity=0.185  Sum_probs=80.9

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh-------hhhhhhhhccCCcccEEEeC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG-------VKMELVDAAFPLLKGVVATT   73 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g-------~~~dl~~~~~~~~~~v~~~~   73 (300)
                      |++..++|.|+||+|.+|++++..|++.|.-      ++++++.+.  ++++.       ...|+.+..     .+   .
T Consensus         2 ~~~~~~~vlItGgsg~iG~~la~~l~~~G~~------~V~~~~r~~--~~~~~~~~~~~~~~~D~~~~~-----~~---~   65 (238)
T PRK08264          2 MDIKGKVVLVTGANRGIGRAFVEQLLARGAA------KVYAAARDP--ESVTDLGPRVVPLQLDVTDPA-----SV---A   65 (238)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCcc------cEEEEecCh--hhhhhcCCceEEEEecCCCHH-----HH---H
Confidence            4556679999999999999999999987641      578888753  22221       111222111     00   0


Q ss_pred             ChhhhcCCCcEEEEeCCCCCCC----CCcH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCchhhHHHHHHHH
Q 022227           74 DAVEACTGVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        74 ~~~~a~~~aDvVi~~ag~~~~~----g~~r---~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                      ...+.+...|+||+++|.....    ..+.   .+.+..|......+.+.+.+..  .+..+++++|+....        
T Consensus        66 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~--------  137 (238)
T PRK08264         66 AAAEAASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSW--------  137 (238)
T ss_pred             HHHHhcCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhc--------
Confidence            1122234589999999873211    1122   2345667766666666654321  012356777654321        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                       .+.+....++.++.-...+...+++++
T Consensus       138 -~~~~~~~~y~~sK~a~~~~~~~l~~~~  164 (238)
T PRK08264        138 -VNFPNLGTYSASKAAAWSLTQALRAEL  164 (238)
T ss_pred             -cCCCCchHhHHHHHHHHHHHHHHHHHh
Confidence             122322234555555556666666665

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.04  E-value=0.00025  Score=61.21  Aligned_cols=96  Identities=18%  Similarity=0.187  Sum_probs=59.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      +|+++|+| +|++|+.++..+...|.       |+..-..+. +++++..+..+.-       .++. ....+|.+.||+
T Consensus         1 m~~~~i~G-tGniG~alA~~~a~ag~-------eV~igs~r~-~~~~~a~a~~l~~-------~i~~-~~~~dA~~~aDV   63 (211)
T COG2085           1 MMIIAIIG-TGNIGSALALRLAKAGH-------EVIIGSSRG-PKALAAAAAALGP-------LITG-GSNEDAAALADV   63 (211)
T ss_pred             CcEEEEec-cChHHHHHHHHHHhCCC-------eEEEecCCC-hhHHHHHHHhhcc-------cccc-CChHHHHhcCCE
Confidence            37899999 89999999999998764       666664442 3444433332321       1222 356789999999


Q ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                      ||++-  |          +...    .++.+.+...-. +-++|=.|||.
T Consensus        64 VvLAV--P----------~~a~----~~v~~~l~~~~~-~KIvID~tnp~   96 (211)
T COG2085          64 VVLAV--P----------FEAI----PDVLAELRDALG-GKIVIDATNPI   96 (211)
T ss_pred             EEEec--c----------HHHH----HhHHHHHHHHhC-CeEEEecCCCc
Confidence            99983  2          1222    334444443221 34678889994

>PRK05875 short chain dehydrogenase; Provisional

Probab=98.03  E-value=7.4e-05  Score=67.10  Aligned_cols=161  Identities=12%  Similarity=0.053  Sum_probs=87.3

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-C----CcccEEEeCChh
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-P----LLKGVVATTDAV   76 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-~----~~~~v~~~~~~~   76 (300)
                      +++.+++.|+||+|++|++++..|++.|.       +|++++.++  ++++....++..... .    ...++.-..+..
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~   74 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-------AVMIVGRNP--DKLAAAAEEIEALKGAGAVRYEPADVTDEDQVA   74 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHHHhccCCCceEEEEcCCCCHHHHH
Confidence            34557999999999999999999998875       788888753  333322223321100 0    000111011111


Q ss_pred             hhc-------CCCcEEEEeCCCCCC--C--CCcH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCchhhHHHH
Q 022227           77 EAC-------TGVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALI  140 (300)
Q Consensus        77 ~a~-------~~aDvVi~~ag~~~~--~--g~~r---~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~~~~~~~  140 (300)
                      ..+       ...|++|+.||....  +  ..+.   .+.+..|......+.+.+.+.-  .+...++++|+...     
T Consensus        75 ~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~-----  149 (276)
T PRK05875         75 RAVDAATAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAA-----  149 (276)
T ss_pred             HHHHHHHHHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhh-----
Confidence            222       368999999985421  1  1222   2345567666666665444321  11235676665332     


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEE
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV  182 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~  182 (300)
                         . ...|....++.++.-...+.+.+++.++  +..++..
T Consensus       150 ---~-~~~~~~~~Y~~sK~a~~~~~~~~~~~~~--~~~i~v~  185 (276)
T PRK05875        150 ---S-NTHRWFGAYGVTKSAVDHLMKLAADELG--PSWVRVN  185 (276)
T ss_pred             ---c-CCCCCCcchHHHHHHHHHHHHHHHHHhc--ccCeEEE
Confidence               1 1123223466677666677777777765  3456533

>PRK08265 short chain dehydrogenase; Provisional

Probab=98.02  E-value=0.0001  Score=65.92  Aligned_cols=162  Identities=14%  Similarity=0.087  Sum_probs=85.8

Q ss_pred             CC-CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChh---
Q 022227            1 MA-KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAV---   76 (300)
Q Consensus         1 m~-~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~---   76 (300)
                      |. ++.+++.|+||+|.+|..++..|++.|.       +|++.|++.  ++++....++.........++.-..+..   
T Consensus         1 m~~~~~k~vlItGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~   71 (261)
T PRK08265          1 MIGLAGKVAIVTGGATLIGAAVARALVAAGA-------RVAIVDIDA--DNGAAVAASLGERARFIATDITDDAAIERAV   71 (261)
T ss_pred             CCCCCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCeeEEEEecCCCHHHHHHHH
Confidence            54 3557899999999999999999998875       788998863  3332222111100000000111011111   


Q ss_pred             ----hhcCCCcEEEEeCCCCCCC--CCcH---HHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEecCchhhHHHHHHHHCC
Q 022227           77 ----EACTGVNIAVMVGGFPRKE--GMER---KDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        77 ----~a~~~aDvVi~~ag~~~~~--g~~r---~dl~~~N~~i~~~i~~~i~~~~-~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                          +.+...|++|+.||.....  ..+.   .+.+..|+.....+.+.+...- .+...+|+++.-...         .
T Consensus        72 ~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~---------~  142 (261)
T PRK08265         72 ATVVARFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAK---------F  142 (261)
T ss_pred             HHHHHHhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhc---------c
Confidence                2234679999999864322  1222   2345567665555554443321 123456776653321         1


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEE
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV  182 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~  182 (300)
                      +.|..-.++.++.-...+.+.++.++.  +..|+..
T Consensus       143 ~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn  176 (261)
T PRK08265        143 AQTGRWLYPASKAAIRQLTRSMAMDLA--PDGIRVN  176 (261)
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHhc--ccCEEEE
Confidence            222222455555555666777777764  3456543

>PRK06179 short chain dehydrogenase; Provisional

Probab=98.02  E-value=7.3e-05  Score=66.95  Aligned_cols=108  Identities=18%  Similarity=0.214  Sum_probs=64.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh------hhhhhhhhccCCcccEEEeCChhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG------VKMELVDAAFPLLKGVVATTDAVE   77 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g------~~~dl~~~~~~~~~~v~~~~~~~~   77 (300)
                      +.++|.||||+|.+|++++..|+.+|.       +|++.+.++  +.++.      ...|+.+..           +..+
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~D~~d~~-----------~~~~   62 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGY-------RVFGTSRNP--ARAAPIPGVELLELDVTDDA-----------SVQA   62 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-------EEEEEeCCh--hhccccCCCeeEEeecCCHH-----------HHHH
Confidence            345899999999999999999998874       688888753  22211      112222211           1222


Q ss_pred             h-------cCCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCc
Q 022227           78 A-------CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANP  133 (300)
Q Consensus        78 a-------~~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP  133 (300)
                      +       +...|++|++||......   .+   -...+..|......+.+.    +++.+.  .++|++|+.
T Consensus        63 ~~~~~~~~~g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~--~~iv~isS~  133 (270)
T PRK06179         63 AVDEVIARAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGS--GRIINISSV  133 (270)
T ss_pred             HHHHHHHhCCCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--ceEEEECCc
Confidence            2       345799999999754221   11   234566676555555554    444432  356776653

>PRK07326 short chain dehydrogenase; Provisional

Probab=98.00  E-value=8e-05  Score=65.13  Aligned_cols=122  Identities=15%  Similarity=0.151  Sum_probs=67.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc-cC-CcccEEEeCChhh---
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FP-LLKGVVATTDAVE---   77 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~-~~-~~~~v~~~~~~~~---   77 (300)
                      ++.++|+|+||+|++|++++..|+..|.       +++++++++  +++.....++.... .. ...++.-..+..+   
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~   74 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGY-------KVAITARDQ--KELEEAAAELNNKGNVLGLAADVRDEADVQRAVD   74 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCC-------EEEEeeCCH--HHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHH
Confidence            4457899999999999999999998764       788888763  33332222332110 00 0001000011112   


Q ss_pred             ----hcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEecCc
Q 022227           78 ----ACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANP  133 (300)
Q Consensus        78 ----a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~-~~~~viv~sNP  133 (300)
                          .+..+|+||+++|.....   ..+.   .+.+..|+.....+.+.+.+... ....+|++|+.
T Consensus        75 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~  141 (237)
T PRK07326         75 AIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL  141 (237)
T ss_pred             HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence                234789999999865321   1222   23466677666666555543321 12356666654

>PRK06138 short chain dehydrogenase; Provisional

Probab=98.00  E-value=4.7e-05  Score=67.18  Aligned_cols=152  Identities=16%  Similarity=0.083  Sum_probs=80.7

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhh-hhccC-CcccEEEeCChhhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELV-DAAFP-LLKGVVATTDAVEA   78 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~-~~~~~-~~~~v~~~~~~~~a   78 (300)
                      |..+.++++|+||+|.+|++++..|++.|.       ++++++.+.  +.+.....++. ..... ...++.-..+..++
T Consensus         1 m~~~~k~~lItG~sg~iG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   71 (252)
T PRK06138          1 MRLAGRVAIVTGAGSGIGRATAKLFAREGA-------RVVVADRDA--EAAERVAAAIAAGGRAFARQGDVGSAEAVEAL   71 (252)
T ss_pred             CCCCCcEEEEeCCCchHHHHHHHHHHHCCC-------eEEEecCCH--HHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence            666677999999999999999999998774       688888753  33322222221 00000 00011000011122


Q ss_pred             -------cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHH----HHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           79 -------CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQA----SALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        79 -------~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~----~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                             +.+.|+||+++|.....   ..+.   ...+..|+.....+.    +.+++..  ..+++++|.-...     
T Consensus        72 ~~~i~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~ii~~sS~~~~-----  144 (252)
T PRK06138         72 VDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQG--GGSIVNTASQLAL-----  144 (252)
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcC--CeEEEEECChhhc-----
Confidence                   24789999999864321   1122   223566766554444    4444443  2356666643221     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                          .+.+....++.++.-...+.+.+++++
T Consensus       145 ----~~~~~~~~Y~~sK~a~~~~~~~l~~~~  171 (252)
T PRK06138        145 ----AGGRGRAAYVASKGAIASLTRAMALDH  171 (252)
T ss_pred             ----cCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence                122222334555555556666677665

>PRK06182 short chain dehydrogenase; Validated

Probab=98.00  E-value=7.9e-05  Score=66.93  Aligned_cols=114  Identities=15%  Similarity=0.150  Sum_probs=64.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc-----
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC-----   79 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~-----   79 (300)
                      .++|+||||+|.+|.+++..|++.|.       +|++.+.++  ++++....   ........++.-..+..+.+     
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~l~~~~~---~~~~~~~~Dv~~~~~~~~~~~~~~~   70 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGY-------TVYGAARRV--DKMEDLAS---LGVHPLSLDVTDEASIKAAVDTIIA   70 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHh---CCCeEEEeeCCCHHHHHHHHHHHHH
Confidence            45899999999999999999998774       688888753  33321110   00000001111111122222     


Q ss_pred             --CCCcEEEEeCCCCCCC---CC---cHHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecC
Q 022227           80 --TGVNIAVMVGGFPRKE---GM---ERKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        80 --~~aDvVi~~ag~~~~~---g~---~r~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                        .+.|++|+.||.....   ..   +....+..|...    ++.+.+.+++...  .++|++|+
T Consensus        71 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~--g~iv~isS  133 (273)
T PRK06182         71 EEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS--GRIINISS  133 (273)
T ss_pred             hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC--CEEEEEcc
Confidence              3789999999875321   11   123445666654    5666666666543  35777765

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.98  E-value=8e-05  Score=65.22  Aligned_cols=125  Identities=18%  Similarity=0.183  Sum_probs=67.8

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh-
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV-   76 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~-   76 (300)
                      |.++.++|+|+||+|++|++++..|++.|.       ++++...+. .+.++....++......   ...++.-..+.. 
T Consensus         1 ~~~~~~~vlItG~sg~iG~~l~~~l~~~G~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~   72 (248)
T PRK05557          1 MSLEGKVALVTGASRGIGRAIAERLAAQGA-------NVVINYASS-EAGAEALVAEIGALGGKALAVQGDVSDAESVER   72 (248)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCc-hhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence            667778999999999999999999998875       565555432 12222222222111000   000110000111 


Q ss_pred             ------hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEecCc
Q 022227           77 ------EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANP  133 (300)
Q Consensus        77 ------~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~--~~~~viv~sNP  133 (300)
                            +.+.+.|+||+++|.....   ..+.   ...+..|+.....+.+.+.++..  +..+++++|+.
T Consensus        73 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~  143 (248)
T PRK05557         73 AVDEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSV  143 (248)
T ss_pred             HHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence                  1234689999999864321   1122   23455677777777766665421  12356666653

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=97.97  E-value=1.1e-05  Score=73.61  Aligned_cols=156  Identities=15%  Similarity=0.183  Sum_probs=84.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||.|+||+|++|+++...|...++       +++.++..         ..|+.+....        ....++. ..|+|
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~-------~v~~~~r~---------~~dl~d~~~~--------~~~~~~~-~pd~V   55 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGY-------EVIATSRS---------DLDLTDPEAV--------AKLLEAF-KPDVV   55 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSE-------EEEEESTT---------CS-TTSHHHH--------HHHHHHH---SEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCC-------EEEEeCch---------hcCCCCHHHH--------HHHHHHh-CCCeE
Confidence            6999999999999999999887654       67777543         1234332200        0111222 47999


Q ss_pred             EEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH----HHHHCCCCCCCcEEeeehh
Q 022227           86 VMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEFAPSIPAKNITCLTRL  159 (300)
Q Consensus        86 i~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~----~~~~~~~~p~~~i~~~t~l  159 (300)
                      |++|+.....  ..++......|+.....+++.+.+.   ++++|.+|.=. +..--    ..+.. ...+.+.+|-+++
T Consensus        56 in~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~---~~~li~~STd~-VFdG~~~~~y~E~d-~~~P~~~YG~~K~  130 (286)
T PF04321_consen   56 INCAAYTNVDACEKNPEEAYAINVDATKNLAEACKER---GARLIHISTDY-VFDGDKGGPYTEDD-PPNPLNVYGRSKL  130 (286)
T ss_dssp             EE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHC---T-EEEEEEEGG-GS-SSTSSSB-TTS-----SSHHHHHHH
T ss_pred             eccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHc---CCcEEEeeccE-EEcCCcccccccCC-CCCCCCHHHHHHH
Confidence            9999875321  2244556778999999999999887   45677776421 10000    00000 0112346777887


Q ss_pred             hHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeee
Q 022227          160 DHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD  195 (300)
Q Consensus       160 d~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~  195 (300)
                      ..+++....   .. +..-+|.-.++|.++.+.+-.
T Consensus       131 ~~E~~v~~~---~~-~~~IlR~~~~~g~~~~~~~~~  162 (286)
T PF04321_consen  131 EGEQAVRAA---CP-NALILRTSWVYGPSGRNFLRW  162 (286)
T ss_dssp             HHHHHHHHH----S-SEEEEEE-SEESSSSSSHHHH
T ss_pred             HHHHHHHHh---cC-CEEEEecceecccCCCchhhh
Confidence            766544331   12 444556656689877655443

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK06482 short chain dehydrogenase; Provisional

Probab=97.96  E-value=8.2e-05  Score=66.88  Aligned_cols=147  Identities=13%  Similarity=0.161  Sum_probs=79.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChh-------hh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAV-------EA   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~-------~a   78 (300)
                      +++.||||+|++|++++..|+..|.       .+.+++.++  +.++.....+.........+++-..+..       +.
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   73 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD-------RVAATVRRP--DALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAA   73 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            5799999999999999999998774       677777653  2222111110000000000000000111       12


Q ss_pred             cCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHHHHCCCC
Q 022227           79 CTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEFAPSI  148 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~  148 (300)
                      +...|+||++||......   .+.   ...+..|+.....+.+.+    ++.+.  .++|++|+-...         .+.
T Consensus        74 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~--~~iv~~sS~~~~---------~~~  142 (276)
T PRK06482         74 LGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGG--GRIVQVSSEGGQ---------IAY  142 (276)
T ss_pred             cCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CEEEEEcCcccc---------cCC
Confidence            346899999998754221   112   345667888888887776    33322  356666652210         123


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHc
Q 022227          149 PAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                      |....++.++.-...+...+++.+
T Consensus       143 ~~~~~Y~~sK~a~~~~~~~l~~~~  166 (276)
T PRK06482        143 PGFSLYHATKWGIEGFVEAVAQEV  166 (276)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHh
Confidence            333345666665556666666664

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.96  E-value=0.0002  Score=65.96  Aligned_cols=110  Identities=24%  Similarity=0.315  Sum_probs=74.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhh--hc---cC---CcccEEEeCChh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD--AA---FP---LLKGVVATTDAV   76 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~--~~---~~---~~~~v~~~~~~~   76 (300)
                      ++||+|+| +|.=|++++..|.+.+.       +++|+.+++  +    ...++..  ..   +|   +..++..++|+.
T Consensus         1 ~~kI~ViG-aGswGTALA~~la~ng~-------~V~lw~r~~--~----~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~   66 (329)
T COG0240           1 MMKIAVIG-AGSWGTALAKVLARNGH-------EVRLWGRDE--E----IVAEINETRENPKYLPGILLPPNLKATTDLA   66 (329)
T ss_pred             CceEEEEc-CChHHHHHHHHHHhcCC-------eeEEEecCH--H----HHHHHHhcCcCccccCCccCCcccccccCHH
Confidence            37999999 79999999999998763       788898863  2    2223332  22   12   346788899999


Q ss_pred             hhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC-----chhhHHHHHHHH
Q 022227           77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN-----PANTNALILKEF  144 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN-----P~~~~~~~~~~~  144 (300)
                      +++++||+|++.-  |              ...++++++.++.+-+++++++.+|-     +...++.++.+.
T Consensus        67 ~a~~~ad~iv~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~  123 (329)
T COG0240          67 EALDGADIIVIAV--P--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEE  123 (329)
T ss_pred             HHHhcCCEEEEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHH
Confidence            9999999999973  2              24455666666544445666776662     234556666555

>PRK06398 aldose dehydrogenase; Validated

Probab=97.96  E-value=0.0002  Score=63.94  Aligned_cols=149  Identities=12%  Similarity=0.086  Sum_probs=83.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchh-hhhhhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE-ALNGVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~-~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      ++.+++.|+||+|.+|.+++..|+..|.       ++++++.++... ++.....|+.+....  ..  ......+.+..
T Consensus         4 l~gk~vlItGas~gIG~~ia~~l~~~G~-------~Vi~~~r~~~~~~~~~~~~~D~~~~~~i--~~--~~~~~~~~~~~   72 (258)
T PRK06398          4 LKDKVAIVTGGSQGIGKAVVNRLKEEGS-------NVINFDIKEPSYNDVDYFKVDVSNKEQV--IK--GIDYVISKYGR   72 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-------eEEEEeCCccccCceEEEEccCCCHHHH--HH--HHHHHHHHcCC
Confidence            3557899999999999999999998875       688888753211 122223344432200  00  00011223457


Q ss_pred             CcEEEEeCCCCCCC---CCcHH---HHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCC
Q 022227           82 VNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKEFAPSIPAK  151 (300)
Q Consensus        82 aDvVi~~ag~~~~~---g~~r~---dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~  151 (300)
                      .|++|+.||.....   ..+..   ..+..|+.....+.+.    +.+..  ...+|++|.-...         ...|..
T Consensus        73 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~---------~~~~~~  141 (258)
T PRK06398         73 IDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQD--KGVIINIASVQSF---------AVTRNA  141 (258)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CeEEEEeCcchhc---------cCCCCC
Confidence            89999999875321   11222   3456676655555444    43332  3466776653211         112322


Q ss_pred             cEEeeehhhHHHHHHHHHHHcC
Q 022227          152 NITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       152 ~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ..|+.++.-...+.+.++.+++
T Consensus       142 ~~Y~~sKaal~~~~~~la~e~~  163 (258)
T PRK06398        142 AAYVTSKHAVLGLTRSIAVDYA  163 (258)
T ss_pred             chhhhhHHHHHHHHHHHHHHhC
Confidence            3466666666677778888776

>PRK07890 short chain dehydrogenase; Provisional

Probab=97.96  E-value=0.00014  Score=64.40  Aligned_cols=154  Identities=16%  Similarity=0.093  Sum_probs=83.7

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCCh--
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDA--   75 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~--   75 (300)
                      |-++.++|.|+||+|+||++++..|+.+|.       +|+++|+++  +.++....++......   ...++.-..+.  
T Consensus         1 ~~l~~k~vlItGa~~~IG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~   71 (258)
T PRK07890          1 MLLKGKVVVVSGVGPGLGRTLAVRAARAGA-------DVVLAARTA--ERLDEVAAEIDDLGRRALAVPTDITDEDQCAN   71 (258)
T ss_pred             CccCCCEEEEECCCCcHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHHhCCceEEEecCCCCHHHHHH
Confidence            445667999999999999999999998875       788898753  3333333333211100   00111100111  


Q ss_pred             -----hhhcCCCcEEEEeCCCCCC--C--CCcH---HHHHHhhHHHHHHHHHHHhhhcCC-CeEEEEecCchhhHHHHHH
Q 022227           76 -----VEACTGVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASALEQHAAP-NCKVLVVANPANTNALILK  142 (300)
Q Consensus        76 -----~~a~~~aDvVi~~ag~~~~--~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~~-~~~viv~sNP~~~~~~~~~  142 (300)
                           .+.+...|+||+.||....  +  ..+.   .+.+..|+.....+.+.+.++-.+ ..++|++|+...       
T Consensus        72 ~~~~~~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~-------  144 (258)
T PRK07890         72 LVALALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVL-------  144 (258)
T ss_pred             HHHHHHHHcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhh-------
Confidence                 1223468999999986421  1  1222   344667777777777666543211 125666665322       


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                      .  .+.|....++.++--...+.+.+++++
T Consensus       145 ~--~~~~~~~~Y~~sK~a~~~l~~~~a~~~  172 (258)
T PRK07890        145 R--HSQPKYGAYKMAKGALLAASQSLATEL  172 (258)
T ss_pred             c--cCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence            1  122322334555444445555566554

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.96  E-value=6.2e-05  Score=73.31  Aligned_cols=119  Identities=15%  Similarity=0.252  Sum_probs=72.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhh---hhhhcc-----C-CcccEEEeCChh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME---LVDAAF-----P-LLKGVVATTDAV   76 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~d---l~~~~~-----~-~~~~v~~~~~~~   76 (300)
                      |||+|+| +|+||..++..|+..|. +    .+++.+|+++  ++.+.....   +.+...     . ...+++.+++..
T Consensus         2 m~I~ViG-~GyvGl~~A~~lA~~g~-g----~~V~gvD~~~--~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~   73 (473)
T PLN02353          2 VKICCIG-AGYVGGPTMAVIALKCP-D----IEVVVVDISV--PRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVE   73 (473)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhcCC-C----CeEEEEECCH--HHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHH
Confidence            7999999 89999999999997642 1    2799999974  444332111   111000     0 123477888888


Q ss_pred             hhcCCCcEEEEeCCCCCCCCC-cHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEe--cCchh
Q 022227           77 EACTGVNIAVMVGGFPRKEGM-ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVV--ANPAN  135 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~g~-~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~--sNP~~  135 (300)
                      +++++||++|++.+.|...+- +. + -..+...+.+.++.|.++.+++. +|+.  |-|..
T Consensus        74 ~~i~~advi~I~V~TP~~~~g~~~-~-~~~Dls~v~~a~~~i~~~l~~~~-lVv~~STvp~G  132 (473)
T PLN02353         74 KHVAEADIVFVSVNTPTKTRGLGA-G-KAADLTYWESAARMIADVSKSDK-IVVEKSTVPVK  132 (473)
T ss_pred             HHHhcCCEEEEEeCCCCCCCCCcC-C-CCCcHHHHHHHHHHHHhhCCCCc-EEEEeCCCCCC
Confidence            899999999999988864321 00 0 01233445566666666655443 3333  34544

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=97.95  E-value=7.1e-05  Score=66.88  Aligned_cols=155  Identities=13%  Similarity=0.109  Sum_probs=83.5

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh-----hhhhhhhhhccCCcccEEEeCChh
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN-----GVKMELVDAAFPLLKGVVATTDAV   76 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~-----g~~~dl~~~~~~~~~~v~~~~~~~   76 (300)
                      +++.++++|+||+|.+|..++..|++.|.       ++++.|.++.  ++.     ....|+.+....  ..  ......
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~-------~v~~~~~~~~--~~~~~~~~~~~~D~~~~~~~--~~--~~~~~~   72 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGA-------NVVNADIHGG--DGQHENYQFVPTDVSSAEEV--NH--TVAEII   72 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCcc--ccccCceEEEEccCCCHHHH--HH--HHHHHH
Confidence            34557899999999999999999998875       7888887642  221     112233322100  00  000112


Q ss_pred             hhcCCCcEEEEeCCCCCCC------------CCcH---HHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEecCchhhHHH
Q 022227           77 EACTGVNIAVMVGGFPRKE------------GMER---KDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNAL  139 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~------------g~~r---~dl~~~N~~i~~~i~~~i~~~~~--~~~~viv~sNP~~~~~~  139 (300)
                      +.+...|++|++||.....            ..+.   ...+..|+.....+.+.+.++-.  +...+|++|+....   
T Consensus        73 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~---  149 (266)
T PRK06171         73 EKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGL---  149 (266)
T ss_pred             HHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEcccccc---
Confidence            2334689999999864210            1122   23466777666666655554321  12356666654321   


Q ss_pred             HHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       140 ~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                            .+.+....++.++.-...+.+.+++++.  +.+|+
T Consensus       150 ------~~~~~~~~Y~~sK~a~~~l~~~la~e~~--~~gi~  182 (266)
T PRK06171        150 ------EGSEGQSCYAATKAALNSFTRSWAKELG--KHNIR  182 (266)
T ss_pred             ------CCCCCCchhHHHHHHHHHHHHHHHHHhh--hcCeE
Confidence                  1122222345554444556666777664  34454

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.95  E-value=0.00011  Score=65.34  Aligned_cols=154  Identities=10%  Similarity=0.083  Sum_probs=81.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh--
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a--   78 (300)
                      +.++|.|+||+|.+|..++..|+..|.       .+++++.+++.+.+.   ..+.+....   ...++.-..+..+.  
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~-------~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~i~~~~~   83 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGA-------DIIITTHGTNWDETR---RLIEKEGRKVTFVQVDLTKPESAEKVVK   83 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCcHHHHHH---HHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence            457899999999999999999998775       688887753222221   112111000   00111111111122  


Q ss_pred             -----cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHH----HHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           79 -----CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQA----SALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        79 -----~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~----~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                           +...|++|+++|.....   ..+.   .+.+..|+.....+.    +.+.+..  ...+|++|+....       
T Consensus        84 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~-------  154 (258)
T PRK06935         84 EALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQG--SGKIINIASMLSF-------  154 (258)
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcC--CeEEEEECCHHhc-------
Confidence                 23679999999874321   1122   234556665544444    4444432  2357777664321       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                        .+.+..-.++.++.....+.+.++++++  +.+|+
T Consensus       155 --~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~  187 (258)
T PRK06935        155 --QGGKFVPAYTASKHGVAGLTKAFANELA--AYNIQ  187 (258)
T ss_pred             --cCCCCchhhHHHHHHHHHHHHHHHHHhh--hhCeE
Confidence              1112112345555555667777777765  33444

>PRK06128 oxidoreductase; Provisional

Probab=97.95  E-value=0.0002  Score=65.43  Aligned_cols=153  Identities=17%  Similarity=0.137  Sum_probs=84.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCC-------
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTD-------   74 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~-------   74 (300)
                      .++|.||||+|.+|.+++..|+..|.       ++++.+.+.+...++.....+......   ...++.-..+       
T Consensus        55 ~k~vlITGas~gIG~~~a~~l~~~G~-------~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~  127 (300)
T PRK06128         55 GRKALITGADSGIGRATAIAFAREGA-------DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVER  127 (300)
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHcCC-------EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH
Confidence            46899999999999999999998875       677766543222222222222211100   0011110111       


Q ss_pred             hhhhcCCCcEEEEeCCCCC--CC--CCc---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCC
Q 022227           75 AVEACTGVNIAVMVGGFPR--KE--GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS  147 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~--~~--g~~---r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~  147 (300)
                      ..+.+...|++|+.||...  .+  ..+   -...+..|+.....+++.+.++-.++.++|++|+....         .+
T Consensus       128 ~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~---------~~  198 (300)
T PRK06128        128 AVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSY---------QP  198 (300)
T ss_pred             HHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCcccc---------CC
Confidence            1222346899999998642  11  112   23457788888878887776653334466666653321         11


Q ss_pred             CCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          148 IPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       148 ~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .+..-.++.++.-...+.+.+++.+.
T Consensus       199 ~~~~~~Y~asK~a~~~~~~~la~el~  224 (300)
T PRK06128        199 SPTLLDYASTKAAIVAFTKALAKQVA  224 (300)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhh
Confidence            12112355566655667777777653

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.94  E-value=0.00025  Score=62.00  Aligned_cols=153  Identities=13%  Similarity=0.077  Sum_probs=85.0

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhh---hhhhhhhhhhhccCCcccEEEeCChhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA---LNGVKMELVDAAFPLLKGVVATTDAVE   77 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~---l~g~~~dl~~~~~~~~~~v~~~~~~~~   77 (300)
                      |..+.+++.|+||+|.+|++++..|++.|.       +++++++++....   +.....|+.+.          .....+
T Consensus         1 ~~l~~k~~lVtGas~~iG~~ia~~l~~~G~-------~v~~~~r~~~~~~~~~~~~~~~D~~~~----------~~~~~~   63 (235)
T PRK06550          1 QEFMTKTVLITGAASGIGLAQARAFLAQGA-------QVYGVDKQDKPDLSGNFHFLQLDLSDD----------LEPLFD   63 (235)
T ss_pred             CCCCCCEEEEcCCCchHHHHHHHHHHHCCC-------EEEEEeCCcccccCCcEEEEECChHHH----------HHHHHH
Confidence            566667899999999999999999998775       6888887532110   01111222221          011223


Q ss_pred             hcCCCcEEEEeCCCCC--CC--CCcH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCchhhHHHHHHHHCCCC
Q 022227           78 ACTGVNIAVMVGGFPR--KE--GMER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAPSI  148 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~--~~--g~~r---~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~~~~~~~~~~~~~~~  148 (300)
                      .+...|++|+.||...  .+  ..+.   ...+..|+.....+.+.+...-  .+...+++++.....         .+.
T Consensus        64 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~---------~~~  134 (235)
T PRK06550         64 WVPSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASF---------VAG  134 (235)
T ss_pred             hhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhc---------cCC
Confidence            3567899999998642  11  1122   2346677666555555544321  012356666643321         112


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEE
Q 022227          149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVKN  181 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~  181 (300)
                      |....++.++.-...+.+.+++++.  +..|+.
T Consensus       135 ~~~~~Y~~sK~a~~~~~~~la~~~~--~~gi~v  165 (235)
T PRK06550        135 GGGAAYTASKHALAGFTKQLALDYA--KDGIQV  165 (235)
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence            2222456666555566677777764  344553

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.93  E-value=0.00012  Score=64.76  Aligned_cols=119  Identities=20%  Similarity=0.204  Sum_probs=66.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh---
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE---   77 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~---   77 (300)
                      +.++|.|+||+|++|++++..|+..|.       +++++++++  ++++....++......   ...++.-..+..+   
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~   73 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGA-------KVVIADLND--EAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGID   73 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence            446899999999999999999998775       788898864  3333333333211100   0011111111112   


Q ss_pred             ----hcCCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCc
Q 022227           78 ----ACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        78 ----a~~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                          .+.+.|+||++||......   .+   -.+.+..|+..    ++.+.+.+++...  .+++++|+.
T Consensus        74 ~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~iss~  141 (258)
T PRK12429         74 YAVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGG--GRIINMASV  141 (258)
T ss_pred             HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCC--eEEEEEcch
Confidence                2246899999998643211   11   12334556555    5666666665542  256666653

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=97.93  E-value=0.00019  Score=63.26  Aligned_cols=155  Identities=15%  Similarity=0.096  Sum_probs=82.1

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCCh-----
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDA-----   75 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~-----   75 (300)
                      |+.+.++|.||||+|.||.+++..|++.|.       ++++++.++. +.+......+.........++.-..+.     
T Consensus         1 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~-------~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   72 (248)
T TIGR01832         1 FSLEGKVALVTGANTGLGQGIAVGLAEAGA-------DIVGAGRSEP-SETQQQVEALGRRFLSLTADLSDIEAIKALVD   72 (248)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCchH-HHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence            455678999999999999999999998875       7888887531 111111111100000000011101111     


Q ss_pred             --hhhcCCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHHHHHHHHHHhh----hcCCCeEEEEecCchhhHHHHHHH
Q 022227           76 --VEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQ----HAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        76 --~~a~~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~----~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                        .+.+...|++|++||......   .+   -.+.+..|+.....+.+.+.+    ... ...+|++++-..        
T Consensus        73 ~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~--------  143 (248)
T TIGR01832        73 SAVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGR-GGKIINIASMLS--------  143 (248)
T ss_pred             HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CeEEEEEecHHh--------
Confidence              122346899999998743211   11   234466776666666655543    221 245666665321        


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      + .+.+....++.++.-...+.+.+++.+.
T Consensus       144 ~-~~~~~~~~Y~~sKaa~~~~~~~la~e~~  172 (248)
T TIGR01832       144 F-QGGIRVPSYTASKHGVAGLTKLLANEWA  172 (248)
T ss_pred             c-cCCCCCchhHHHHHHHHHHHHHHHHHhC
Confidence            1 1112122355555555566777777764

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=97.93  E-value=9.2e-05  Score=75.33  Aligned_cols=144  Identities=11%  Similarity=0.065  Sum_probs=84.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEE--EEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc--
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH--MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC--   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~--L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~--   79 (300)
                      ..|||.||||+||+|++++..|...+.       ++.  .-|+              .+..           .....+  
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~-------~v~~~~~~l--------------~d~~-----------~v~~~i~~  426 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEKQGI-------AYEYGKGRL--------------EDRS-----------SLLADIRN  426 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHhCCC-------eEEeecccc--------------ccHH-----------HHHHHHHh
Confidence            457999999999999999999987663       342  1121              1110           011111  


Q ss_pred             CCCcEEEEeCCCCCCCC-----CcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----------HHHHH
Q 022227           80 TGVNIAVMVGGFPRKEG-----MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----------ILKEF  144 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~g-----~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----------~~~~~  144 (300)
                      .+.|+|||+|+....+.     .+..+....|+....++++.+++.+   ++++++|... +..+          -..+.
T Consensus       427 ~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g---~~~v~~Ss~~-v~~~~~~~~~~~~~p~~E~  502 (668)
T PLN02260        427 VKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENG---LLMMNFATGC-IFEYDAKHPEGSGIGFKEE  502 (668)
T ss_pred             hCCCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcC---CeEEEEcccc-eecCCcccccccCCCCCcC
Confidence            26899999998753221     2445678899999999999999874   4456664311 1000          00111


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      .+-.|+.+.++.+++..+++...+++.     ..++..+++|.+
T Consensus       503 ~~~~~~~~~Yg~sK~~~E~~~~~~~~~-----~~~r~~~~~~~~  541 (668)
T PLN02260        503 DKPNFTGSFYSKTKAMVEELLREYDNV-----CTLRVRMPISSD  541 (668)
T ss_pred             CCCCCCCChhhHHHHHHHHHHHhhhhh-----eEEEEEEecccC
Confidence            011123357888888887776555432     234444456543

>PRK07069 short chain dehydrogenase; Validated

Probab=97.93  E-value=0.00062  Score=59.92  Aligned_cols=155  Identities=21%  Similarity=0.215  Sum_probs=85.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-Cc----ccEEEeCCh------
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LL----KGVVATTDA------   75 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-~~----~~v~~~~~~------   75 (300)
                      ||+|+||+|++|.+++..|+..|.       ++++.+.+. .++++....++.+.... ..    .++.-..+.      
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~-------~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   72 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA-------KVFLTDIND-AAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQ   72 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCc-chHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHH
Confidence            489999999999999999998875       788998752 23343333233221100 00    011000011      


Q ss_pred             -hhhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           76 -VEACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        76 -~~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                       .+.+...|+||+.||.....   ..+.   ...+..|+.    ..+.+.+.+.+...  ..++++|+....        
T Consensus        73 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~ii~~ss~~~~--------  142 (251)
T PRK07069         73 AADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP--ASIVNISSVAAF--------  142 (251)
T ss_pred             HHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC--cEEEEecChhhc--------
Confidence             12235689999999875421   1122   334566766    77778888876543  356666654321        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                       .+.|..-.++.++.-...+.+.+++++.-....++
T Consensus       143 -~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~  177 (251)
T PRK07069        143 -KAEPDYTAYNASKAAVASLTKSIALDCARRGLDVR  177 (251)
T ss_pred             -cCCCCCchhHHHHHHHHHHHHHHHHHhcccCCcEE
Confidence             11221223555555555666677777654333344

>PRK08643 acetoin reductase; Validated

Probab=97.92  E-value=0.00028  Score=62.55  Aligned_cols=154  Identities=16%  Similarity=0.175  Sum_probs=82.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCC-------h
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTD-------A   75 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~-------~   75 (300)
                      ++++|+||+|++|.+++..|++.|.       +++++|.+.  ++++....++.+....   ...++.-..+       .
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   73 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGF-------KVAIVDYNE--ETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQV   73 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence            4789999999999999999998875       788998753  3333233333221100   0011111111       1


Q ss_pred             hhhcCCCcEEEEeCCCCCC-CC--CcH---HHHHHhhHHHHHHHH----HHHhhhcCCCeEEEEecCchhhHHHHHHHHC
Q 022227           76 VEACTGVNIAVMVGGFPRK-EG--MER---KDVMSKNVSIYKAQA----SALEQHAAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~-~g--~~r---~dl~~~N~~i~~~i~----~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                      .+.+...|++|++||.... +-  .+.   ...+..|+.....+.    +.+.+... +.+++++|+....         
T Consensus        74 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~---------  143 (256)
T PRK08643         74 VDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGH-GGKIINATSQAGV---------  143 (256)
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CCEEEEECccccc---------
Confidence            1223468999999987432 11  111   234556765544444    33433322 3467777754321         


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      .+.|....++.++.-...+.+.+++++.  +..|+
T Consensus       144 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~  176 (256)
T PRK08643        144 VGNPELAVYSSTKFAVRGLTQTAARDLA--SEGIT  176 (256)
T ss_pred             cCCCCCchhHHHHHHHHHHHHHHHHHhc--ccCcE
Confidence            1223223456666655566677777653  34454

>PRK06172 short chain dehydrogenase; Provisional

Probab=97.92  E-value=0.00017  Score=63.82  Aligned_cols=156  Identities=14%  Similarity=0.056  Sum_probs=84.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhhc-
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC-   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a~-   79 (300)
                      +.++|+|+||+|.+|+.++..|++.|.       ++++++.++  +.++....++......   ...++.-..+..+.+ 
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~   76 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA-------KVVVADRDA--AGGEETVALIREAGGEALFVACDVTRDAEVKALVE   76 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence            457999999999999999999998764       788898863  3333222233221100   001111011112222 


Q ss_pred             ------CCCcEEEEeCCCCCCC----CCcH---HHHHHhhHHHHHHHHH----HHhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           80 ------TGVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQAS----ALEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        80 ------~~aDvVi~~ag~~~~~----g~~r---~dl~~~N~~i~~~i~~----~i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                            ...|++|+.+|.....    ..+.   .+.+..|+.....+.+    .+.+..  ...++++|+....      
T Consensus        77 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~ii~~sS~~~~------  148 (253)
T PRK06172         77 QTIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQG--GGAIVNTASVAGL------  148 (253)
T ss_pred             HHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEECchhhc------
Confidence                  3459999999874321    2222   2345667666544443    343332  2356666653321      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEE
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN  181 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~  181 (300)
                         .+.+....++.++.-...+.+.+++++.  +.+|+.
T Consensus       149 ---~~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~~i~v  182 (253)
T PRK06172        149 ---GAAPKMSIYAASKHAVIGLTKSAAIEYA--KKGIRV  182 (253)
T ss_pred             ---cCCCCCchhHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence               1223222455566655677777777764  345553

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.92  E-value=0.0002  Score=64.42  Aligned_cols=171  Identities=18%  Similarity=0.196  Sum_probs=101.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc----CCcccEEEeCCh---
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF----PLLKGVVATTDA---   75 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~----~~~~~v~~~~~~---   75 (300)
                      ++.++++||||++-||..++..|+.+|+       .|+|+.++  +++|+..+.++++...    ....++.-..+.   
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-------~liLvaR~--~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l   74 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGY-------NLILVARR--EDKLEALAKELEDKTGVEVEVIPADLSDPEALERL   74 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCc--HHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHH
Confidence            4557899999999999999999999886       79999986  5888888888876431    001111111111   


Q ss_pred             ----hhhcCCCcEEEEeCCCCCCC------CCcHHHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           76 ----VEACTGVNIAVMVGGFPRKE------GMERKDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        76 ----~~a~~~aDvVi~~ag~~~~~------g~~r~dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                          .+..-..|+.|..||.....      ..+..+++.-|+-    ..+.+.+.+.+.+. + -+|++++-+..     
T Consensus        75 ~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~-G-~IiNI~S~ag~-----  147 (265)
T COG0300          75 EDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGA-G-HIINIGSAAGL-----  147 (265)
T ss_pred             HHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c-eEEEEechhhc-----
Confidence                11122589999999975422      1233567777764    44555666666543 3 58888753321     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeecc
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVN  197 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s  197 (300)
                        . |. |..-+|+.|+---.-|...|..++  ....|+-..|  .-|.+.=..|.
T Consensus       148 --~-p~-p~~avY~ATKa~v~~fSeaL~~EL--~~~gV~V~~v--~PG~~~T~f~~  195 (265)
T COG0300         148 --I-PT-PYMAVYSATKAFVLSFSEALREEL--KGTGVKVTAV--CPGPTRTEFFD  195 (265)
T ss_pred             --C-CC-cchHHHHHHHHHHHHHHHHHHHHh--cCCCeEEEEE--ecCcccccccc
Confidence              1 11 333355666555555555565555  4444543332  34454444443

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=97.91  E-value=0.00011  Score=70.38  Aligned_cols=79  Identities=23%  Similarity=0.275  Sum_probs=53.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---------C-cccEEEeCCh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---------L-LKGVVATTDA   75 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---------~-~~~v~~~~~~   75 (300)
                      |||+|+| +|.+|..++..|+..|.       +|..+|+++  ++++...........+         . ..+++.+++.
T Consensus         1 mkI~vIG-lG~~G~~lA~~La~~G~-------~V~~~d~~~--~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~   70 (411)
T TIGR03026         1 MKIAVIG-LGYVGLPLAALLADLGH-------EVTGVDIDQ--EKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDY   70 (411)
T ss_pred             CEEEEEC-CCchhHHHHHHHHhcCC-------eEEEEECCH--HHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCH
Confidence            4899999 89999999999998774       799999864  3333211100000000         0 1236667777


Q ss_pred             hhhcCCCcEEEEeCCCCCC
Q 022227           76 VEACTGVNIAVMVGGFPRK   94 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~   94 (300)
                      .+++++||+||++...|..
T Consensus        71 ~~~~~~advvii~vpt~~~   89 (411)
T TIGR03026        71 EDAIRDADVIIICVPTPLK   89 (411)
T ss_pred             HHHHhhCCEEEEEeCCCCC
Confidence            7889999999999776643

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.91  E-value=0.00012  Score=66.06  Aligned_cols=143  Identities=7%  Similarity=0.071  Sum_probs=77.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-CcccEEEeCChhhhc-----
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEAC-----   79 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-~~~~v~~~~~~~~a~-----   79 (300)
                      ++|.||||+|.+|.+++..|+..|.       +|++.+.++  +.++.    +.+.... ...++.-..+..+++     
T Consensus         5 k~vlItGasggiG~~la~~l~~~G~-------~Vi~~~r~~--~~~~~----l~~~~~~~~~~Dl~d~~~~~~~~~~~~~   71 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSDGW-------RVFATCRKE--EDVAA----LEAEGLEAFQLDYAEPESIAALVAQVLE   71 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHH----HHHCCceEEEccCCCHHHHHHHHHHHHH
Confidence            5799999999999999999998774       788888753  33321    1110000 000110000111111     


Q ss_pred             ---CCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           80 ---TGVNIAVMVGGFPRKE---GMER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        80 ---~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                         ...|++|+.||.....   ..+.   ...+..|+..    .+.+.+.+++.+.  .++|++|+...        . .
T Consensus        72 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~--g~iv~isS~~~--------~-~  140 (277)
T PRK05993         72 LSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQ--GRIVQCSSILG--------L-V  140 (277)
T ss_pred             HcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCC--CEEEEECChhh--------c-C
Confidence               2579999999875321   1121   3356677665    6667777766542  35777765321        1 1


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                      ..|....++.++.-...+...++.++
T Consensus       141 ~~~~~~~Y~asK~a~~~~~~~l~~el  166 (277)
T PRK05993        141 PMKYRGAYNASKFAIEGLSLTLRMEL  166 (277)
T ss_pred             CCCccchHHHHHHHHHHHHHHHHHHh
Confidence            22322345555555555555555444

>PRK07478 short chain dehydrogenase; Provisional

Probab=97.90  E-value=0.0003  Score=62.39  Aligned_cols=154  Identities=16%  Similarity=0.127  Sum_probs=86.7

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE   77 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~   77 (300)
                      |+.+.++++|+||+|.+|..++..|++.|.       ++++.+.++  ++++....++.+....   ...++.-..+..+
T Consensus         2 ~~~~~k~~lItGas~giG~~ia~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~   72 (254)
T PRK07478          2 MRLNGKVAIITGASSGIGRAAAKLFAREGA-------KVVVGARRQ--AELDQLVAEIRAEGGEAVALAGDVRDEAYAKA   72 (254)
T ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence            444557899999999999999999998875       788888753  4444333333321100   0001110111111


Q ss_pred             -------hcCCCcEEEEeCCCCC--CC--CCcH---HHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHH
Q 022227           78 -------ACTGVNIAVMVGGFPR--KE--GMER---KDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNAL  139 (300)
Q Consensus        78 -------a~~~aDvVi~~ag~~~--~~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~  139 (300)
                             .+...|++|+.||...  .+  ..+.   ...+..|+.    ..+.+.+.+.+..  ..++|++++....   
T Consensus        73 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~--~~~iv~~sS~~~~---  147 (254)
T PRK07478         73 LVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG--GGSLIFTSTFVGH---  147 (254)
T ss_pred             HHHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CceEEEEechHhh---
Confidence                   2336899999998632  12  1222   334666764    4445555555543  2356766653321   


Q ss_pred             HHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       140 ~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                          . .+.|....++.++.-...+...++++++
T Consensus       148 ----~-~~~~~~~~Y~~sK~a~~~~~~~la~e~~  176 (254)
T PRK07478        148 ----T-AGFPGMAAYAASKAGLIGLTQVLAAEYG  176 (254)
T ss_pred             ----c-cCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence                0 1233333567777766777777888765

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.89  E-value=0.00042  Score=60.94  Aligned_cols=152  Identities=17%  Similarity=0.117  Sum_probs=80.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV----   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~----   76 (300)
                      +.++++|+||+|.+|++++..|++.|.       ++++++.++  ++++....++......   ...++.-..+..    
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~   76 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGA-------TVAFNDGLA--AEARELAAALEAAGGRAHAIAADLADPASVQRFFD   76 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence            457899999999999999999998775       788888753  3343333333221100   000110001111    


Q ss_pred             ---hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEecCchhhHHHHHHHHC
Q 022227           77 ---EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        77 ---~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~--~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                         +.+.+.|+||+++|.....   ..+.   ...+..|......+.+.+.++..  +..++|++|.....         
T Consensus        77 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~---------  147 (250)
T PRK12939         77 AAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTAL---------  147 (250)
T ss_pred             HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhc---------
Confidence               1125789999999874321   1122   22355677666666655543311  13367776653210         


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .+.+..-.++.++.-..++.+.+++++.
T Consensus       148 ~~~~~~~~y~~sK~~~~~~~~~l~~~~~  175 (250)
T PRK12939        148 WGAPKLGAYVASKGAVIGMTRSLARELG  175 (250)
T ss_pred             cCCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            1112111234444445556666666654

>PRK07825 short chain dehydrogenase; Provisional

Probab=97.89  E-value=0.00019  Score=64.46  Aligned_cols=151  Identities=16%  Similarity=0.067  Sum_probs=81.3

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCC------
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD------   74 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~------   74 (300)
                      |+++.++|.||||+|.+|..++..|+..|.       .+++.+.++  ++++....++.... ....++.-..+      
T Consensus         1 ~~~~~~~ilVtGasggiG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~   70 (273)
T PRK07825          1 DDLRGKVVAITGGARGIGLATARALAALGA-------RVAIGDLDE--ALAKETAAELGLVV-GGPLDVTDPASFAAFLD   70 (273)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhccce-EEEccCCCHHHHHHHHH
Confidence            677778999999999999999999998875       688888753  44432222221000 00000000001      


Q ss_pred             -hhhhcCCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHH----HHHHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           75 -AVEACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKA----QASALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        75 -~~~a~~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~----i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                       ..+.+.+.|++|+.||.....   ..+   -...+..|+.....    +.+.+.+.+.  ..++++|.-...       
T Consensus        71 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~--g~iv~isS~~~~-------  141 (273)
T PRK07825         71 AVEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGR--GHVVNVASLAGK-------  141 (273)
T ss_pred             HHHHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CEEEEEcCcccc-------
Confidence             122235789999999875321   111   12345667654444    4455544432  357777754321       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                        .+.|..-.++.++.-...+...++.++
T Consensus       142 --~~~~~~~~Y~asKaa~~~~~~~l~~el  168 (273)
T PRK07825        142 --IPVPGMATYCASKHAVVGFTDAARLEL  168 (273)
T ss_pred             --CCCCCCcchHHHHHHHHHHHHHHHHHh
Confidence              122322234555544444555555554

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.89  E-value=9.1e-05  Score=66.37  Aligned_cols=153  Identities=14%  Similarity=0.131  Sum_probs=82.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh-
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-   78 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a-   78 (300)
                      .+.+++.|+||+|.||+.++..|+..|.       +|+++|++.  +.++....++......   ...++.-..+..++ 
T Consensus         7 ~~~k~ilItGasggIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~   77 (264)
T PRK07576          7 FAGKNVVVVGGTSGINLGIAQAFARAGA-------NVAVASRSQ--EKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAF   77 (264)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHH
Confidence            3457899999999999999999998774       788998753  3333222223211100   00111111111222 


Q ss_pred             ------cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEecCchhhHHHHHHHHC
Q 022227           79 ------CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        79 ------~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~-~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                            +...|++|+.||.....   ..+.   ...+..|......+.+.+.+.- .++..++++|.....         
T Consensus        78 ~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~---------  148 (264)
T PRK07576         78 AQIADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAF---------  148 (264)
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhc---------
Confidence                  34579999998754211   1222   2345577766666665554321 112367777765321         


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .+.|....++.++.-..++...++..+.
T Consensus       149 ~~~~~~~~Y~asK~a~~~l~~~la~e~~  176 (264)
T PRK07576        149 VPMPMQAHVCAAKAGVDMLTRTLALEWG  176 (264)
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHHHhh
Confidence            1122222355555555667677777664

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.89  E-value=0.00018  Score=59.98  Aligned_cols=64  Identities=20%  Similarity=0.385  Sum_probs=46.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      ++||++|| .|.+|+.++..|+..|+       ++..+|+.+  ++++.    +.+.      ......+..++++++|+
T Consensus         1 m~~Ig~IG-lG~mG~~~a~~L~~~g~-------~v~~~d~~~--~~~~~----~~~~------g~~~~~s~~e~~~~~dv   60 (163)
T PF03446_consen    1 MMKIGFIG-LGNMGSAMARNLAKAGY-------EVTVYDRSP--EKAEA----LAEA------GAEVADSPAEAAEQADV   60 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTT-------EEEEEESSH--HHHHH----HHHT------TEEEESSHHHHHHHBSE
T ss_pred             CCEEEEEc-hHHHHHHHHHHHHhcCC-------eEEeeccch--hhhhh----hHHh------hhhhhhhhhhHhhcccc
Confidence            37999999 89999999999998875       899999863  43332    2221      13455688899999999


Q ss_pred             EEEe
Q 022227           85 AVMV   88 (300)
Q Consensus        85 Vi~~   88 (300)
                      ||.+
T Consensus        61 vi~~   64 (163)
T PF03446_consen   61 VILC   64 (163)
T ss_dssp             EEE-
T ss_pred             eEee
Confidence            9987

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK08219 short chain dehydrogenase; Provisional

Probab=97.89  E-value=0.00018  Score=62.37  Aligned_cols=115  Identities=21%  Similarity=0.239  Sum_probs=62.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC---C
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT---G   81 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~---~   81 (300)
                      ++++.|+||+|++|+.++..|+++ .       ++++++++.  +.++....++.+.. ....++.-..+..++++   +
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~-------~V~~~~r~~--~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~   71 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-H-------TLLLGGRPA--ERLDELAAELPGAT-PFPVDLTDPEAIAAAVEQLGR   71 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-C-------CEEEEeCCH--HHHHHHHHHhccce-EEecCCCCHHHHHHHHHhcCC
Confidence            468999999999999999999876 3       688888753  22221111111000 00011111112334443   6


Q ss_pred             CcEEEEeCCCCCCCC---CcH---HHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCc
Q 022227           82 VNIAVMVGGFPRKEG---MER---KDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        82 aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                      .|+||+++|......   .+.   ...+..|....    +.+.+.+++.   ..+++++|..
T Consensus        72 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~---~~~~v~~ss~  130 (227)
T PRK08219         72 LDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA---HGHVVFINSG  130 (227)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC---CCeEEEEcch
Confidence            899999998753211   121   23355666664    4444444443   2356666643

>PRK09072 short chain dehydrogenase; Provisional

Probab=97.89  E-value=0.00032  Score=62.60  Aligned_cols=122  Identities=25%  Similarity=0.263  Sum_probs=69.3

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEe-CCh---h
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT-TDA---V   76 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~-~~~---~   76 (300)
                      |.++.++++|+||+|.+|..++..|+..|.       +|+++++++  +.++....++....  ...-+... ++.   .
T Consensus         1 m~~~~~~vlItG~s~~iG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~--~~~~~~~D~~d~~~~~   69 (263)
T PRK09072          1 MDLKDKRVLLTGASGGIGQALAEALAAAGA-------RLLLVGRNA--EKLEALAARLPYPG--RHRWVVADLTSEAGRE   69 (263)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHhcCC--ceEEEEccCCCHHHHH
Confidence            677778999999999999999999998875       788998763  33332222221100  00000000 011   0


Q ss_pred             ------hhcCCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCc
Q 022227           77 ------EACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANP  133 (300)
Q Consensus        77 ------~a~~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP  133 (300)
                            ..+...|++|++||......   .+   -.+.+..|+.....+.+.+.++-  .+...++++++.
T Consensus        70 ~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~  140 (263)
T PRK09072         70 AVLARAREMGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGST  140 (263)
T ss_pred             HHHHHHHhcCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence                  11356899999998753211   11   13456677776666666654421  112356666653

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=97.89  E-value=9.3e-05  Score=65.07  Aligned_cols=119  Identities=19%  Similarity=0.119  Sum_probs=66.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhhc-
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC-   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a~-   79 (300)
                      +.++|+|+||+|++|.+++..|+++|.       +|++++++.  +++.....++......   ...++.-..+..+.+ 
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~   75 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA-------EVIVVDICG--DDAAATAELVEAAGGKARARQVDVRDRAALKAAVA   75 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence            457899999999999999999998875       688888763  3333222223211100   000110011112222 


Q ss_pred             ------CCCcEEEEeCCCCCC-C--CCcH---HHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEecCc
Q 022227           80 ------TGVNIAVMVGGFPRK-E--GMER---KDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANP  133 (300)
Q Consensus        80 ------~~aDvVi~~ag~~~~-~--g~~r---~dl~~~N~~i~~~i~~~i~----~~~~~~~~viv~sNP  133 (300)
                            ...|+||+++|.... +  ..+.   .+.+..|+.....+.+.+.    +...  .++|++|.-
T Consensus        76 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~ii~~ss~  143 (251)
T PRK12826         76 AGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGG--GRIVLTSSV  143 (251)
T ss_pred             HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--cEEEEEech
Confidence                  368999999876532 1  1222   3356677776666666553    3332  356666643

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.87  E-value=0.00051  Score=61.39  Aligned_cols=151  Identities=14%  Similarity=0.056  Sum_probs=84.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC---cccEEEeCChhhh--
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAVEA--   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~---~~~v~~~~~~~~a--   78 (300)
                      +.+++.|+||+|++|.+++..|+.+|.       ++++++++.  ++++....++.......   ..++.-..+..++  
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~   79 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA-------DVLIAARTE--SQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAG   79 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence            457899999999999999999998875       788998863  33433333332111000   0011000011111  


Q ss_pred             -----cCCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHHHhh----hcCCCeEEEEecCchhhHHHHHHH
Q 022227           79 -----CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQ----HAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        79 -----~~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~----~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                           +...|+||+.||.....   ..+   -.+.+..|......+.+.+.+    ... ...++++|+-...       
T Consensus        80 ~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~g~iv~~sS~~~~-------  151 (263)
T PRK07814         80 QAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSG-GGSVINISSTMGR-------  151 (263)
T ss_pred             HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcC-CeEEEEEcccccc-------
Confidence                 24689999999864321   111   234466777766666666543    232 2457777653221       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                        .+.+....++.++.-...+...++.++.
T Consensus       152 --~~~~~~~~Y~~sK~a~~~~~~~~~~e~~  179 (263)
T PRK07814        152 --LAGRGFAAYGTAKAALAHYTRLAALDLC  179 (263)
T ss_pred             --CCCCCCchhHHHHHHHHHHHHHHHHHHC
Confidence              1123223456666655667777777764

>PRK08263 short chain dehydrogenase; Provisional

Probab=97.87  E-value=0.00013  Score=65.70  Aligned_cols=147  Identities=14%  Similarity=0.129  Sum_probs=75.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCC-------hhhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD-------AVEA   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~-------~~~a   78 (300)
                      ++|.|+||+|++|++++..|++.|.       ++++.+.++  +.++.....+.........++.-..+       ..+.
T Consensus         4 k~vlItGasg~iG~~~a~~l~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   74 (275)
T PRK08263          4 KVWFITGASRGFGRAWTEAALERGD-------RVVATARDT--ATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEH   74 (275)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHH
Confidence            5899999999999999999998764       688888753  33321111110000000000000001       1122


Q ss_pred             cCCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHH----HHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCC
Q 022227           79 CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQA----SALEQHAAPNCKVLVVANPANTNALILKEFAPSI  148 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~----~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~  148 (300)
                      +...|.||++||.....   ..+   -.+.+..|+.....+.    +.+++... + ++|++|.....         .+.
T Consensus        75 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~-~iv~vsS~~~~---------~~~  143 (275)
T PRK08263         75 FGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRS-G-HIIQISSIGGI---------SAF  143 (275)
T ss_pred             cCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-C-EEEEEcChhhc---------CCC
Confidence            34679999999975321   112   2345667776654444    44455432 3 56666643211         122


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHc
Q 022227          149 PAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                      |....++.++.-...+...++.++
T Consensus       144 ~~~~~Y~~sKaa~~~~~~~la~e~  167 (275)
T PRK08263        144 PMSGIYHASKWALEGMSEALAQEV  167 (275)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHh
Confidence            322234555554445555666654

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.87  E-value=0.00025  Score=62.51  Aligned_cols=156  Identities=14%  Similarity=0.106  Sum_probs=79.6

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCC---
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTD---   74 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~---   74 (300)
                      |+++.++|.|+||+|+||++++..|++.|.       ++++...+. .+.+.....++......   ...++.-..+   
T Consensus         2 ~~~~~~~vlitGasg~iG~~l~~~l~~~g~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~   73 (252)
T PRK06077          2 YSLKDKVVVVTGSGRGIGRAIAVRLAKEGS-------LVVVNAKKR-AEEMNETLKMVKENGGEGIGVLADVSTREGCET   73 (252)
T ss_pred             CCCCCcEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCC-hHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHH
Confidence            345567999999999999999999998775       555544321 12222211111111000   0001110111   


Q ss_pred             ----hhhhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           75 ----AVEACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        75 ----~~~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                          ..+.+...|+||++||.....   ..+.   .+.+..|+.....+.+.+.++-.+..++|++|+-..        +
T Consensus        74 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~--------~  145 (252)
T PRK06077         74 LAKATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAG--------I  145 (252)
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhc--------c
Confidence                112234679999999863211   1222   234556665555555555543222235666664221        1


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                       .+.+....++.++.....+...++++++
T Consensus       146 -~~~~~~~~Y~~sK~~~~~~~~~l~~~~~  173 (252)
T PRK06077        146 -RPAYGLSIYGAMKAAVINLTKYLALELA  173 (252)
T ss_pred             -CCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence             1233233345555555666777777765

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=97.87  E-value=4.7e-05  Score=67.77  Aligned_cols=115  Identities=14%  Similarity=0.085  Sum_probs=64.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEE-eCChhhhc-CC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA-TTDAVEAC-TG   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~-~~~~~~a~-~~   81 (300)
                      .++||+|+||+|++|+.++..|+..+.       +|+++.++.  +++.....+-.... ....++.- ..+..+++ .+
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~-------~V~~~~R~~--~~~~~~~~~~~~~~-~~~~Dl~d~~~~l~~~~~~~   85 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGF-------AVKAGVRDV--DKAKTSLPQDPSLQ-IVRADVTEGSDKLVEAIGDD   85 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCC-------EEEEEecCH--HHHHHhcccCCceE-EEEeeCCCCHHHHHHHhhcC
Confidence            457999999999999999999998764       566665542  22211100000000 00001100 01234556 68


Q ss_pred             CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      +|+||+++|.....+.  .+....|......+++.+.+...  .++|++|.
T Consensus        86 ~d~vi~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~--~~iV~iSS  132 (251)
T PLN00141         86 SDAVICATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGV--TRFILVSS  132 (251)
T ss_pred             CCEEEECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcCC--CEEEEEcc
Confidence            9999998876432111  11123455667788888877643  25565553

>PLN02996 fatty acyl-CoA reductase

Probab=97.87  E-value=0.00028  Score=69.27  Aligned_cols=122  Identities=18%  Similarity=0.125  Sum_probs=69.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchh----hhhhh--hhhhhhh-------ccC--CcccE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE----ALNGV--KMELVDA-------AFP--LLKGV   69 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~----~l~g~--~~dl~~~-------~~~--~~~~v   69 (300)
                      .++|.||||+||+|++++..|+...-   +. .+|+++.+.+..+    ++...  ..++.+.       .+.  ...++
T Consensus        11 ~k~VlvTGaTGFlG~~ll~~LL~~~~---~v-~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv   86 (491)
T PLN02996         11 NKTILVTGATGFLAKIFVEKILRVQP---NV-KKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKV   86 (491)
T ss_pred             CCeEEEeCCCcHHHHHHHHHHHhhCC---CC-CEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCE
Confidence            46899999999999999999886421   11 1566665543211    11100  0111110       000  00111


Q ss_pred             EE-eCC-------------hhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           70 VA-TTD-------------AVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        70 ~~-~~~-------------~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      +. ..|             ..+.++++|+|||+|+.... ..+..+....|+....++++.+.+..... +++.+|.
T Consensus        87 ~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k-~~V~vST  161 (491)
T PLN02996         87 TPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNF-DERYDVALGINTLGALNVLNFAKKCVKVK-MLLHVST  161 (491)
T ss_pred             EEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccCC-cCCHHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEEee
Confidence            11 111             23456789999999986542 33456677889999999999988753212 3555443

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.86  E-value=0.00015  Score=63.70  Aligned_cols=149  Identities=20%  Similarity=0.168  Sum_probs=80.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc---C
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC---T   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~---~   80 (300)
                      +.++++|+||+|++|.+++..|+..|.       ++++++.++  ++++.....+ ... ....++.-..+..+++   .
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-------~V~~~~r~~--~~~~~~~~~~-~~~-~~~~D~~~~~~v~~~~~~~~   76 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGA-------RVVAAARNA--AALDRLAGET-GCE-PLRLDVGDDAAIRAALAAAG   76 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHh-CCe-EEEecCCCHHHHHHHHHHhC
Confidence            457899999999999999999998774       788898753  3332111111 000 0000110011122222   3


Q ss_pred             CCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcC-C--CeEEEEecCchhhHHHHHHHHCCCCCCC
Q 022227           81 GVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAA-P--NCKVLVVANPANTNALILKEFAPSIPAK  151 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~-~--~~~viv~sNP~~~~~~~~~~~~~~~p~~  151 (300)
                      ..|+||+.+|.....   ..+.   .+.+..|+.....+.+.+.+... +  ..++|++|+....         .+.+..
T Consensus        77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~---------~~~~~~  147 (245)
T PRK07060         77 AFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAAL---------VGLPDH  147 (245)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHc---------CCCCCC
Confidence            589999999875321   1122   23456777777677666655321 1  1356666643321         112222


Q ss_pred             cEEeeehhhHHHHHHHHHHHc
Q 022227          152 NITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       152 ~i~~~t~ld~~R~~~~la~~l  172 (300)
                      ..++.++.-..++.+.+++.+
T Consensus       148 ~~y~~sK~a~~~~~~~~a~~~  168 (245)
T PRK07060        148 LAYCASKAALDAITRVLCVEL  168 (245)
T ss_pred             cHhHHHHHHHHHHHHHHHHHH
Confidence            234555555566666677665

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.86  E-value=0.00011  Score=61.97  Aligned_cols=99  Identities=16%  Similarity=0.231  Sum_probs=65.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh---hh---hhhhhhhccCCcccEEEeCChhhhc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN---GV---KMELVDAAFPLLKGVVATTDAVEAC   79 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~---g~---~~dl~~~~~~~~~~v~~~~~~~~a~   79 (300)
                      |||+||||+|.+|+.++..+..+|.       +++-+-+++  .++.   +.   ..|+.+..           ...+++
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH-------eVTAivRn~--~K~~~~~~~~i~q~Difd~~-----------~~a~~l   60 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH-------EVTAIVRNA--SKLAARQGVTILQKDIFDLT-----------SLASDL   60 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC-------eeEEEEeCh--HhccccccceeecccccChh-----------hhHhhh
Confidence            6999999999999999999999875       666665543  3332   21   22333322           445789


Q ss_pred             CCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           80 TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      +|-|+||-+-|.+. ++.  ..+.   .+-...+.+.++..+.  .+++|++.
T Consensus        61 ~g~DaVIsA~~~~~-~~~--~~~~---~k~~~~li~~l~~agv--~RllVVGG  105 (211)
T COG2910          61 AGHDAVISAFGAGA-SDN--DELH---SKSIEALIEALKGAGV--PRLLVVGG  105 (211)
T ss_pred             cCCceEEEeccCCC-CCh--hHHH---HHHHHHHHHHHhhcCC--eeEEEEcC
Confidence            99999999877653 222  1222   2335566777777653  47888875

>PRK12747 short chain dehydrogenase; Provisional

Probab=97.86  E-value=0.00087  Score=59.31  Aligned_cols=153  Identities=15%  Similarity=0.101  Sum_probs=82.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeC-------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATT-------   73 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~-------   73 (300)
                      +.+++.||||+|++|++++..|+..|.       ++++.+... .+.++....++......   ...++.-..       
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   74 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGA-------LVAIHYGNR-KEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYS   74 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-------eEEEEcCCC-HHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHH
Confidence            346899999999999999999998875       577765322 23333222233211000   000000000       


Q ss_pred             Chhhh------cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           74 DAVEA------CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        74 ~~~~a------~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                      +..+.      ....|++|+.||.....   ..+.   ...+..|+.....+.+.+.+.-.+..++|++|+-...     
T Consensus        75 ~~~~~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~-----  149 (252)
T PRK12747         75 SLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATR-----  149 (252)
T ss_pred             HHHHHhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccc-----
Confidence            01111      12689999999864211   1122   2345677666666665554432223467777754321     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                          ...|....|+.++.-...+.+.++.+++
T Consensus       150 ----~~~~~~~~Y~~sKaa~~~~~~~la~e~~  177 (252)
T PRK12747        150 ----ISLPDFIAYSMTKGAINTMTFTLAKQLG  177 (252)
T ss_pred             ----cCCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence                1223223466677767777777888775

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=97.85  E-value=0.00022  Score=63.43  Aligned_cols=147  Identities=17%  Similarity=0.099  Sum_probs=78.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV----   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~----   76 (300)
                      +.+++.||||+|++|++++..|++.|.       +++++|+++.   +.....++......   ...++.-..+..    
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~-------~v~~~~r~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   76 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGA-------RVVLVDRSEL---VHEVAAELRAAGGEALALTADLETYAGAQAAMA   76 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCchH---HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHH
Confidence            346899999999999999999998875       7888887531   11111122111000   000110000111    


Q ss_pred             ---hhcCCCcEEEEeCCCCC--CC--CCcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           77 ---EACTGVNIAVMVGGFPR--KE--GMERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        77 ---~a~~~aDvVi~~ag~~~--~~--g~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                         +.+...|++|+.||...  .+  ..+..   ..+..|+-    .++.+.+.+.+...  .++|++|....       
T Consensus        77 ~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--g~iv~~sS~~~-------  147 (260)
T PRK12823         77 AAVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGG--GAIVNVSSIAT-------  147 (260)
T ss_pred             HHHHHcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CeEEEEcCccc-------
Confidence               12346899999998532  11  12222   23445543    44556666655432  35677665321       


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                       +  + +....++.++.-...+.+.+++++.
T Consensus       148 -~--~-~~~~~Y~~sK~a~~~~~~~la~e~~  174 (260)
T PRK12823        148 -R--G-INRVPYSAAKGGVNALTASLAFEYA  174 (260)
T ss_pred             -c--C-CCCCccHHHHHHHHHHHHHHHHHhc
Confidence             0  1 1112356666666677777887763

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.85  E-value=0.00026  Score=62.11  Aligned_cols=125  Identities=18%  Similarity=0.159  Sum_probs=66.3

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEE-ecCCchhhhhhhhhhhhhhcc---CCcccEEEeCChh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAV   76 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~-D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~~~~   76 (300)
                      |..+.++|.|+||+|++|+.++..|++.|.       +++++ +.++  ++++....++.....   ....++.-..+..
T Consensus         1 ~~~~~~~ilI~Gasg~iG~~la~~l~~~g~-------~v~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~   71 (247)
T PRK05565          1 MKLMGKVAIVTGASGGIGRAIAELLAKEGA-------KVVIAYDINE--EAAQELLEEIKEEGGDAIAVKADVSSEEDVE   71 (247)
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEcCCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            555667999999999999999999988764       56666 7753  233222222221000   0000000000111


Q ss_pred             hh-------cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEecCch
Q 022227           77 EA-------CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPA  134 (300)
Q Consensus        77 ~a-------~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~--~~~~viv~sNP~  134 (300)
                      +.       +...|+||+.+|.....   ..+.   ...+..|......+.+.+.....  +...+|++|...
T Consensus        72 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~  144 (247)
T PRK05565         72 NLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIW  144 (247)
T ss_pred             HHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHh
Confidence            11       23789999999875211   1122   23456677765555555543211  112466666543

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.85  E-value=9.7e-05  Score=64.65  Aligned_cols=39  Identities=15%  Similarity=0.204  Sum_probs=33.2

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      |+.+.++|.|+||+|++|+.++..|++.|.       +|++++.++
T Consensus         1 ~~~~~~~vlItGa~g~iG~~~a~~l~~~G~-------~V~~~~r~~   39 (238)
T PRK05786          1 MRLKGKKVAIIGVSEGLGYAVAYFALKEGA-------QVCINSRNE   39 (238)
T ss_pred             CCcCCcEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence            665667999999999999999999998875       788888753

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=97.85  E-value=0.00022  Score=62.94  Aligned_cols=156  Identities=15%  Similarity=0.085  Sum_probs=81.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch---hhhhhhhhhhhhhccCCcccEEEeCChhhhc
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA---EALNGVKMELVDAAFPLLKGVVATTDAVEAC   79 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~---~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~   79 (300)
                      ++.+++.|+||+|++|+.++..|++.|.       ++++++.+...   ..+.....|+.+....  ..  ......+.+
T Consensus         6 ~~~k~vlItGas~~iG~~la~~l~~~G~-------~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~--~~--~~~~~~~~~   74 (252)
T PRK08220          6 FSGKTVWVTGAAQGIGYAVALAFVEAGA-------KVIGFDQAFLTQEDYPFATFVLDVSDAAAV--AQ--VCQRLLAET   74 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEecchhhhcCCceEEEEecCCCHHHH--HH--HHHHHHHHc
Confidence            3457899999999999999999998875       68888875300   0011112233221100  00  000112223


Q ss_pred             CCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCchhhHHHHHHHHCCCCCCC
Q 022227           80 TGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAPSIPAK  151 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~~~~~~~~~~~~~~~p~~  151 (300)
                      ...|+||+++|.....   ..+.   ...+..|......+++.+..+-  .+..+++++|+-..       .  .+.+..
T Consensus        75 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~-------~--~~~~~~  145 (252)
T PRK08220         75 GPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAA-------H--VPRIGM  145 (252)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchh-------c--cCCCCC
Confidence            4579999999875321   1121   3346677776666665553321  01235666665321       0  111211


Q ss_pred             cEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          152 NITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       152 ~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      ..++.++.-...+.+.+++++.  +.+|+
T Consensus       146 ~~Y~~sK~a~~~~~~~la~e~~--~~~i~  172 (252)
T PRK08220        146 AAYGASKAALTSLAKCVGLELA--PYGVR  172 (252)
T ss_pred             chhHHHHHHHHHHHHHHHHHhh--HhCeE
Confidence            2345555555566667777653  33454

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=97.84  E-value=0.00014  Score=65.66  Aligned_cols=177  Identities=13%  Similarity=0.097  Sum_probs=104.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc-cCCc-ccEEEeCChhhhcC--C
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FPLL-KGVVATTDAVEACT--G   81 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~-~~~~-~~v~~~~~~~~a~~--~   81 (300)
                      |++.|||++||||+++...++...-     ..+++.+|.-.=...++.. .++.+.. ..+. ..+.-.......++  +
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~-----d~~v~~~DkLTYAgn~~~l-~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~   74 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHP-----DDHVVNLDKLTYAGNLENL-ADVEDSPRYRFVQGDICDRELVDRLFKEYQ   74 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCC-----CceEEEEecccccCCHHHH-HhhhcCCCceEEeccccCHHHHHHHHHhcC
Confidence            5899999999999999988886532     1257788753211111111 2233321 1111 11111112344455  6


Q ss_pred             CcEEEEeCCCCC--CCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH------HHHHHCCCCCCCcE
Q 022227           82 VNIAVMVGGFPR--KEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL------ILKEFAPSIPAKNI  153 (300)
Q Consensus        82 aDvVi~~ag~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~------~~~~~~~~~p~~~i  153 (300)
                      .|+|++.|.-..  +.=....++++.|+-.+..+.++++++.. ..+++-+|.= .+-..      .+.+. +.+.|..-
T Consensus        75 ~D~VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~-~frf~HISTD-EVYG~l~~~~~~FtE~-tp~~PsSP  151 (340)
T COG1088          75 PDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWG-KFRFHHISTD-EVYGDLGLDDDAFTET-TPYNPSSP  151 (340)
T ss_pred             CCeEEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcc-cceEEEeccc-cccccccCCCCCcccC-CCCCCCCC
Confidence            899999876432  11223467899999999999999999964 2466666531 11111      11122 34445566


Q ss_pred             EeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceee
Q 022227          154 TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP  194 (300)
Q Consensus       154 ~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p  194 (300)
                      ++-++-.+--+.+...+.+|++..-.++-+   |-|.-|+|
T Consensus       152 YSASKAasD~lVray~~TYglp~~ItrcSN---NYGPyqfp  189 (340)
T COG1088         152 YSASKAASDLLVRAYVRTYGLPATITRCSN---NYGPYQFP  189 (340)
T ss_pred             cchhhhhHHHHHHHHHHHcCCceEEecCCC---CcCCCcCc
Confidence            677766666778888899999876665544   44455555

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.84  E-value=0.00021  Score=65.99  Aligned_cols=104  Identities=19%  Similarity=0.257  Sum_probs=64.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc----cCCcccEEEeCChhhhcCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA----FPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~----~~~~~~v~~~~~~~~a~~~   81 (300)
                      |||+|+| +|.+|+.++..|...|.       ++.++|+++  +.++....+..+..    ......+...++..+++++
T Consensus         2 mkI~iiG-~G~mG~~~a~~L~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (325)
T PRK00094          2 MKIAVLG-AGSWGTALAIVLARNGH-------DVTLWARDP--EQAAEINADRENPRYLPGIKLPDNLRATTDLAEALAD   71 (325)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC
Confidence            6999999 79999999999998764       789999863  33332221110100    0111235556677778899


Q ss_pred             CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      +|+||++.-.                ..+.++.+.+..+..++..+|..+|.++
T Consensus        72 ~D~vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~  109 (325)
T PRK00094         72 ADLILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE  109 (325)
T ss_pred             CCEEEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence            9999998421                1233444455554444556777777554

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=97.82  E-value=8.9e-05  Score=67.05  Aligned_cols=159  Identities=13%  Similarity=0.168  Sum_probs=99.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC--CCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--GVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~--~aD   83 (300)
                      |||.|+|++|++|+.+...|. .+.       ++.-.|..+         +|+.+..           ...+.++  .-|
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~~~-------~v~a~~~~~---------~Ditd~~-----------~v~~~i~~~~PD   52 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-GEF-------EVIATDRAE---------LDITDPD-----------AVLEVIRETRPD   52 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-CCc-------eEEeccCcc---------ccccChH-----------HHHHHHHhhCCC
Confidence            469999999999999988776 322       676676531         5665544           2344455  359


Q ss_pred             EEEEeCCCCCC--CCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC-ch-hhHHHHHHHHCCCC-CCCcEEeeeh
Q 022227           84 IAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN-PA-NTNALILKEFAPSI-PAKNITCLTR  158 (300)
Q Consensus        84 vVi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN-P~-~~~~~~~~~~~~~~-p~~~i~~~t~  158 (300)
                      +||++|....-  ...++..-...|+....++++...+.+   +++|.+|. -+ |-...--.+. ... .|-+++|.|+
T Consensus        53 vVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g---a~lVhiSTDyVFDG~~~~~Y~E-~D~~~P~nvYG~sK  128 (281)
T COG1091          53 VVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVG---ARLVHISTDYVFDGEKGGPYKE-TDTPNPLNVYGRSK  128 (281)
T ss_pred             EEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhC---CeEEEeecceEecCCCCCCCCC-CCCCCChhhhhHHH
Confidence            99999988653  233455567889999999999999985   56777763 22 1000000000 111 1245888888


Q ss_pred             hhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCcee-eecccee
Q 022227          159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY-PDVNHAT  200 (300)
Q Consensus       159 ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~-p~~s~a~  200 (300)
                      +-.+.+...    .+-+.--+|.-.|+|++|.+.+ ..++.+.
T Consensus       129 l~GE~~v~~----~~~~~~I~Rtswv~g~~g~nFv~tml~la~  167 (281)
T COG1091         129 LAGEEAVRA----AGPRHLILRTSWVYGEYGNNFVKTMLRLAK  167 (281)
T ss_pred             HHHHHHHHH----hCCCEEEEEeeeeecCCCCCHHHHHHHHhh
Confidence            876655433    3334445566667999996544 3444443

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.82  E-value=0.00012  Score=66.92  Aligned_cols=105  Identities=13%  Similarity=0.107  Sum_probs=59.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhh---hhhhhccCCcccEEEeCChhhhcCCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM---ELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~---dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      |||+|+| +|.+|..++..|.+.|.       ++.+++. +  ++++....   .+..............++..++.+++
T Consensus         1 mkI~IiG-~G~iG~~~a~~L~~~g~-------~V~~~~r-~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (305)
T PRK12921          1 MRIAVVG-AGAVGGTFGGRLLEAGR-------DVTFLVR-P--KRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPF   69 (305)
T ss_pred             CeEEEEC-CCHHHHHHHHHHHHCCC-------ceEEEec-H--HHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCC
Confidence            5899999 79999999999998763       6889987 2  22222111   11100000001112234555556899


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhH
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN  137 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~  137 (300)
                      |+||++.-.+                ...++++.+..+-.++..+|.+.|..+..
T Consensus        70 d~vilavk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~  108 (305)
T PRK12921         70 DLVILAVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQL  108 (305)
T ss_pred             CEEEEEeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChH
Confidence            9999984211                12234444444433455677788987643

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=97.82  E-value=0.0002  Score=63.82  Aligned_cols=154  Identities=16%  Similarity=0.124  Sum_probs=81.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChh------
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAV------   76 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~------   76 (300)
                      ++.+++.|+||+|.||.+++..|+..|.       +|+++|.++  ++++....++.........++.-..+..      
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   74 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGA-------RVAVLERSA--EKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQT   74 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHH
Confidence            4567899999999999999999998875       788898763  3333222222110000000110000111      


Q ss_pred             -hhcCCCcEEEEeCCCCCC--C--CCcHH-------HHHHhhHHHHHHHHHHHhhhc-CCCeEEEEecCchhhHHHHHHH
Q 022227           77 -EACTGVNIAVMVGGFPRK--E--GMERK-------DVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        77 -~a~~~aDvVi~~ag~~~~--~--g~~r~-------dl~~~N~~i~~~i~~~i~~~~-~~~~~viv~sNP~~~~~~~~~~  143 (300)
                       +.+...|++|+.||....  +  ..+..       ..+..|+.....+.+.+.+.- .+...+|++++-...       
T Consensus        75 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~-------  147 (263)
T PRK06200         75 VDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSF-------  147 (263)
T ss_pred             HHhcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhc-------
Confidence             223468999999997431  1  22221       234456554444444433221 012346665543211       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCC
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNV  174 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v  174 (300)
                        ...+....++.++.-...+.+.+|++++-
T Consensus       148 --~~~~~~~~Y~~sK~a~~~~~~~la~el~~  176 (263)
T PRK06200        148 --YPGGGGPLYTASKHAVVGLVRQLAYELAP  176 (263)
T ss_pred             --CCCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence              11122224666766667778888888753

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=97.81  E-value=0.00021  Score=63.30  Aligned_cols=121  Identities=13%  Similarity=0.144  Sum_probs=68.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh-
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-   78 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a-   78 (300)
                      .+.++|.|+||+|.+|+.++..|+..|.       .|++++.++  +.++....++......   ...++.-..+...+ 
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~   79 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALAGAGA-------HVLVNGRNA--ATLEAAVAALRAAGGAAEALAFDIADEEAVAAAF   79 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCC-------eEEEEeCCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence            3567899999999999999999998775       789998863  3343333333221100   00111111111222 


Q ss_pred             ------cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEecCch
Q 022227           79 ------CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPA  134 (300)
Q Consensus        79 ------~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~----~~~~~~~~viv~sNP~  134 (300)
                            +...|++|+.+|.....   ..+.   ...+..|+.....+.+.+.    +..  ...+|++|+..
T Consensus        80 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~ss~~  149 (256)
T PRK06124         80 ARIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQG--YGRIIAITSIA  149 (256)
T ss_pred             HHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEeech
Confidence                  23469999999864321   1122   2346677666666664443    332  23577777643

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.81  E-value=0.00036  Score=61.16  Aligned_cols=122  Identities=16%  Similarity=0.197  Sum_probs=66.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh--
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a--   78 (300)
                      +.+++.|+||+|.+|.+++..|+..|.       +|++++++.  +.++....++......   ...++.-..+..++  
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-------~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   76 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGV-------NVGLLARTE--ENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIE   76 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHH
Confidence            346899999999999999999998875       788998863  3333222233211000   00011001111222  


Q ss_pred             -----cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCch
Q 022227           79 -----CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPA  134 (300)
Q Consensus        79 -----~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~  134 (300)
                           +.+.|+||+++|.....   ..+.   ...+..|+.....+.+.+..+.  ....++++++...
T Consensus        77 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~  145 (239)
T PRK07666         77 QLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTA  145 (239)
T ss_pred             HHHHHcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchh
Confidence                 24789999999875321   1121   2345667665555555544321  0123566666544

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.81  E-value=0.00021  Score=66.89  Aligned_cols=81  Identities=25%  Similarity=0.306  Sum_probs=50.3

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCC-CCeEEEEEecCC---chhhhhhhhhhhhhhc-c---CCcccEEEeCChhhh
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTD-QPVILHMLDIPP---AAEALNGVKMELVDAA-F---PLLKGVVATTDAVEA   78 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~-~~~~l~L~D~~~---~~~~l~g~~~dl~~~~-~---~~~~~v~~~~~~~~a   78 (300)
                      ||+|+| +|..|++++..|...+...+. ...+|.|+.+++   +++..+....+-.... .   .+..+++.++|+.++
T Consensus         1 kI~VIG-aG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea   79 (342)
T TIGR03376         1 RVAVVG-SGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA   79 (342)
T ss_pred             CEEEEC-cCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence            699999 799999999999876622110 001788888742   1121111111111111 1   124567888899999


Q ss_pred             cCCCcEEEEe
Q 022227           79 CTGVNIAVMV   88 (300)
Q Consensus        79 ~~~aDvVi~~   88 (300)
                      +++||+||++
T Consensus        80 l~~ADiIIlA   89 (342)
T TIGR03376        80 AKGADILVFV   89 (342)
T ss_pred             HhcCCEEEEE
Confidence            9999998887

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK12742 oxidoreductase; Provisional

Probab=97.81  E-value=0.00046  Score=60.32  Aligned_cols=155  Identities=10%  Similarity=0.139  Sum_probs=81.3

Q ss_pred             CC-CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhh--
Q 022227            1 MA-KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE--   77 (300)
Q Consensus         1 m~-~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~--   77 (300)
                      |+ ++.++|.|+||+|.||+.++..|++.|.       ++++.+... .+.++....++. .. ....++.-.....+  
T Consensus         1 m~~~~~k~vlItGasggIG~~~a~~l~~~G~-------~v~~~~~~~-~~~~~~l~~~~~-~~-~~~~D~~~~~~~~~~~   70 (237)
T PRK12742          1 MGAFTGKKVLVLGGSRGIGAAIVRRFVTDGA-------NVRFTYAGS-KDAAERLAQETG-AT-AVQTDSADRDAVIDVV   70 (237)
T ss_pred             CCCCCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEecCCC-HHHHHHHHHHhC-Ce-EEecCCCCHHHHHHHH
Confidence            54 3457899999999999999999998774       676665432 222221111110 00 00000000001111  


Q ss_pred             -hcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCC
Q 022227           78 -ACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPA  150 (300)
Q Consensus        78 -a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~  150 (300)
                       .+...|++|++||.....   ..+.   ...+..|+.....+...+.+.-.+...+|+++.-...      .  ...|.
T Consensus        71 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~------~--~~~~~  142 (237)
T PRK12742         71 RKSGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGD------R--MPVAG  142 (237)
T ss_pred             HHhCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccc------c--CCCCC
Confidence             234589999999875321   1121   3345667665555544443332123456666653210      0  11232


Q ss_pred             CcEEeeehhhHHHHHHHHHHHcC
Q 022227          151 KNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       151 ~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ...++.++.....+...++++++
T Consensus       143 ~~~Y~~sKaa~~~~~~~la~~~~  165 (237)
T PRK12742        143 MAAYAASKSALQGMARGLARDFG  165 (237)
T ss_pred             CcchHHhHHHHHHHHHHHHHHHh
Confidence            33566777766777777888765

>PRK08226 short chain dehydrogenase; Provisional

Probab=97.81  E-value=0.00031  Score=62.55  Aligned_cols=153  Identities=18%  Similarity=0.200  Sum_probs=80.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh--
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE--   77 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~--   77 (300)
                      ++.++++|+||+|.+|++++..|+..|.       ++++++.++  + +.....++......   ...++.-..+..+  
T Consensus         4 ~~~~~~lItG~s~giG~~la~~l~~~G~-------~Vv~~~r~~--~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~   73 (263)
T PRK08226          4 LTGKTALITGALQGIGEGIARVFARHGA-------NLILLDISP--E-IEKLADELCGRGHRCTAVVADVRDPASVAAAI   73 (263)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEecCCH--H-HHHHHHHHHHhCCceEEEECCCCCHHHHHHHH
Confidence            3567899999999999999999998875       789998763  1 11111112110000   0001100001111  


Q ss_pred             -----hcCCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCchhhHHHHHHHH
Q 022227           78 -----ACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        78 -----a~~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                           .+...|+||+.||.....   ..+   ..+.+..|+.....+.+.+.++.  .+...++++|+....       .
T Consensus        74 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~-------~  146 (263)
T PRK08226         74 KRAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGD-------M  146 (263)
T ss_pred             HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhc-------c
Confidence                 134579999999864211   111   23346677776666665544321  112356666653210       0


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                       ...|....++.++.-...+.+.+++.+.
T Consensus       147 -~~~~~~~~Y~~sK~a~~~~~~~la~~~~  174 (263)
T PRK08226        147 -VADPGETAYALTKAAIVGLTKSLAVEYA  174 (263)
T ss_pred             -cCCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence             1122222455555555566677777764

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.80  E-value=0.00026  Score=63.02  Aligned_cols=157  Identities=16%  Similarity=0.101  Sum_probs=81.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-CcccEEEeCChhhh------
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEA------   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-~~~~v~~~~~~~~a------   78 (300)
                      +++.|+||+|++|+.++..|++.|.       +++++|.+.  +.++....++...... ...++.-..+..++      
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   72 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW-------RVGAYDINE--AGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAA   72 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence            4799999999999999999998875       688888753  3333222222100000 00011000111222      


Q ss_pred             --cCCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHHHHHHHHHHhhh---cCCCeEEEEecCchhhHHHHHHHHCCC
Q 022227           79 --CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQH---AAPNCKVLVVANPANTNALILKEFAPS  147 (300)
Q Consensus        79 --~~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~---~~~~~~viv~sNP~~~~~~~~~~~~~~  147 (300)
                        ....|+||++||......   .+   -...+..|+.....+.+.+.++   .+ ..++++++.....         .+
T Consensus        73 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~---------~~  142 (260)
T PRK08267         73 ATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATP-GARVINTSSASAI---------YG  142 (260)
T ss_pred             HcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCEEEEeCchhhC---------cC
Confidence              235699999998754221   11   2345677877666665555322   22 2456776654321         11


Q ss_pred             CCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEE
Q 022227          148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI  183 (300)
Q Consensus       148 ~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~  183 (300)
                      .+....++.++.-...+...++.++.  +..++...
T Consensus       143 ~~~~~~Y~~sKaa~~~~~~~l~~~~~--~~~i~v~~  176 (260)
T PRK08267        143 QPGLAVYSATKFAVRGLTEALDLEWR--RHGIRVAD  176 (260)
T ss_pred             CCCchhhHHHHHHHHHHHHHHHHHhc--ccCcEEEE
Confidence            12111244444444455556665543  33455443

>TIGR01746 Thioester-redct thioester reductase domain

Probab=97.80  E-value=9.7e-05  Score=68.51  Aligned_cols=171  Identities=18%  Similarity=0.125  Sum_probs=90.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhh-hhhhhhhhhhhccC---Cc-ccEEE-eCC------
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA-LNGVKMELVDAAFP---LL-KGVVA-TTD------   74 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~-l~g~~~dl~~~~~~---~~-~~v~~-~~~------   74 (300)
                      +|.||||+|++|++++..|+..+..     .+|+++.+..+.+. .+.....+......   .. .++.. ..|      
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~-----~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~   75 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQ-----AKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRL   75 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCC-----CEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccC
Confidence            5899999999999999999987521     15777776542211 11010011100000   00 11111 111      


Q ss_pred             ------hhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH----HHHH
Q 022227           75 ------AVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEF  144 (300)
Q Consensus        75 ------~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~----~~~~  144 (300)
                            ..+..+++|+|||+|+.... ..+..++...|+....++++.+.+...+  .++++|.-. +....    ....
T Consensus        76 gl~~~~~~~~~~~~d~vih~a~~~~~-~~~~~~~~~~nv~g~~~ll~~a~~~~~~--~~v~iSS~~-v~~~~~~~~~~~~  151 (367)
T TIGR01746        76 GLSDAEWERLAENVDTIVHNGALVNW-VYPYSELRAANVLGTREVLRLAASGRAK--PLHYVSTIS-VLAAIDLSTVTED  151 (367)
T ss_pred             CcCHHHHHHHHhhCCEEEeCCcEecc-CCcHHHHhhhhhHHHHHHHHHHhhCCCc--eEEEEcccc-ccCCcCCCCcccc
Confidence                  23445789999999986532 2234556778999999999988876532  355555322 11100    0000


Q ss_pred             CCCCC----CCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecC
Q 022227          145 APSIP----AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN  187 (300)
Q Consensus       145 ~~~~p----~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~  187 (300)
                      .+..+    ...-++.++...+++....++. |++..-++.-.|.|.
T Consensus       152 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~  197 (367)
T TIGR01746       152 DAIVTPPPGLAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGN  197 (367)
T ss_pred             ccccccccccCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeec
Confidence            00000    0112445566555555544443 777777766666775

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK06101 short chain dehydrogenase; Provisional

Probab=97.79  E-value=0.00047  Score=60.73  Aligned_cols=149  Identities=15%  Similarity=0.113  Sum_probs=83.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC----C
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT----G   81 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~----~   81 (300)
                      .++.||||+|.+|..++..|+..|.       +++++|+++  ++++.......+.. ....++.-..+..++++    .
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~   71 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW-------QVIACGRNQ--SVLDELHTQSANIF-TLAFDVTDHPGTKAALSQLPFI   71 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHhcCCCe-EEEeeCCCHHHHHHHHHhcccC
Confidence            5799999999999999999998775       788998863  33332211100000 00011111112222222    2


Q ss_pred             CcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEe
Q 022227           82 VNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC  155 (300)
Q Consensus        82 aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~  155 (300)
                      .|.+|+.||.....   ..+.   .+.+..|......+.+.+..+-.+..+++++++....         .+.|....++
T Consensus        72 ~d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~---------~~~~~~~~Y~  142 (240)
T PRK06101         72 PELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASE---------LALPRAEAYG  142 (240)
T ss_pred             CCEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhc---------cCCCCCchhh
Confidence            47888888753211   1222   2457788888888888777642223456666653321         1233333566


Q ss_pred             eehhhHHHHHHHHHHHcC
Q 022227          156 LTRLDHNRALGQISEKLN  173 (300)
Q Consensus       156 ~t~ld~~R~~~~la~~l~  173 (300)
                      .++.-...+.+.++.++.
T Consensus       143 asK~a~~~~~~~l~~e~~  160 (240)
T PRK06101        143 ASKAAVAYFARTLQLDLR  160 (240)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            677666677777775553

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.79  E-value=0.00032  Score=62.25  Aligned_cols=153  Identities=14%  Similarity=0.124  Sum_probs=81.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-CCcccEEEeCCh-------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDA-------   75 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-~~~~~v~~~~~~-------   75 (300)
                      +.+++.|+||+|.+|..++..|++.|.       ++++.+... ++.++    ++.+... ....++.-..+.       
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~-------~v~~~~~~~-~~~~~----~l~~~~~~~~~~Dl~~~~~~~~~~~~~   73 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGA-------KVAVLYNSA-ENEAK----ELREKGVFTIKCDVGNRDQVKKSKEVV   73 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCc-HHHHH----HHHhCCCeEEEecCCCHHHHHHHHHHH
Confidence            457899999999999999999998874       576765432 12221    1111000 000000000011       


Q ss_pred             hhhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHC
Q 022227           76 VEACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                      .+.+...|++|++||.....   ..+.   ...+..|+..    ++.+.+.+++..  ...+|++|.....        .
T Consensus        74 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~--~g~iv~isS~~~~--------~  143 (255)
T PRK06463         74 EKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSK--NGAIVNIASNAGI--------G  143 (255)
T ss_pred             HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcCHHhC--------C
Confidence            12234679999999875321   1222   2345566655    566666665443  2456776653211        0


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      +..+....++.++.-...+.+.++.++.  +.+|+
T Consensus       144 ~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~~i~  176 (255)
T PRK06463        144 TAAEGTTFYAITKAGIIILTRRLAFELG--KYGIR  176 (255)
T ss_pred             CCCCCccHhHHHHHHHHHHHHHHHHHhh--hcCeE
Confidence            1112122456666666667777777654  34455

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=97.79  E-value=0.00031  Score=62.23  Aligned_cols=153  Identities=14%  Similarity=0.134  Sum_probs=79.9

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh--
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV--   76 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~--   76 (300)
                      +...+++.||||+|.+|.+++..|+..|.       ++++.|.++  ++++....++.+....   ...++.-..+..  
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~-------~vvl~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~   76 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGA-------EIIINDITA--ERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAA   76 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCC-------EEEEEcCCH--HHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHH
Confidence            34557899999999999999999998774       788998863  3443333333321100   000110000111  


Q ss_pred             -----hhcCCCcEEEEeCCCCCC-C--CCcH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCchhhHHHHHHH
Q 022227           77 -----EACTGVNIAVMVGGFPRK-E--GMER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        77 -----~a~~~aDvVi~~ag~~~~-~--g~~r---~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~~~~~~~~~~  143 (300)
                           +.+...|+||+++|.... +  ..+.   ...+..|......+.+.+.++.  .+..++|++|+-..       .
T Consensus        77 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~-------~  149 (254)
T PRK08085         77 IEHIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQS-------E  149 (254)
T ss_pred             HHHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchh-------c
Confidence                 122457999999986421 1  1122   2346667665555555544432  11246777665321       1


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                        .+.+....++.++.-...+.+.+++++
T Consensus       150 --~~~~~~~~Y~~sK~a~~~~~~~la~e~  176 (254)
T PRK08085        150 --LGRDTITPYAASKGAVKMLTRGMCVEL  176 (254)
T ss_pred             --cCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence              122222234445444445555566554

>PRK08628 short chain dehydrogenase; Provisional

Probab=97.79  E-value=0.00036  Score=61.90  Aligned_cols=153  Identities=14%  Similarity=0.067  Sum_probs=79.6

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA   78 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a   78 (300)
                      +++.+++.||||+|.+|..++..|++.|.       .+++++.++  +++ ....++......   ...++.-..+....
T Consensus         4 ~l~~~~ilItGasggiG~~la~~l~~~G~-------~v~~~~r~~--~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   73 (258)
T PRK08628          4 NLKDKVVIVTGGASGIGAAISLRLAEEGA-------IPVIFGRSA--PDD-EFAEELRALQPRAEFVQVDLTDDAQCRDA   73 (258)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHcCC-------cEEEEcCCh--hhH-HHHHHHHhcCCceEEEEccCCCHHHHHHH
Confidence            45567999999999999999999998875       577787754  222 122222211100   00111111112222


Q ss_pred             c-------CCCcEEEEeCCCCCCCCC-----cHHHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEecCchhhHHHHHHHHC
Q 022227           79 C-------TGVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        79 ~-------~~aDvVi~~ag~~~~~g~-----~r~dl~~~N~~i~~~i~~~i~~~~~-~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                      +       ...|+||++||.......     +-.+.+..|+.....+.+.+.++-. +...++++|.-...         
T Consensus        74 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~---------  144 (258)
T PRK08628         74 VEQTVAKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTAL---------  144 (258)
T ss_pred             HHHHHHhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhc---------
Confidence            2       357999999986432211     1133466777666666655543221 12245555542221         


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .+.+...-++.++.-...+.+.+++++.
T Consensus       145 ~~~~~~~~Y~~sK~a~~~~~~~l~~e~~  172 (258)
T PRK08628        145 TGQGGTSGYAAAKGAQLALTREWAVALA  172 (258)
T ss_pred             cCCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence            1112122345555544556666666553

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.79  E-value=0.0002  Score=63.56  Aligned_cols=150  Identities=20%  Similarity=0.264  Sum_probs=78.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-CCcccEEEeCCh-------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDA-------   75 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-~~~~~v~~~~~~-------   75 (300)
                      +.+++.|+||+|++|++++..|++.|.       ++++++.++  +.++....++.+... ....++.-..+.       
T Consensus        10 ~~~~vlItGa~g~iG~~~a~~L~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   80 (264)
T PRK12829         10 DGLRVLVTGGASGIGRAIAEAFAEAGA-------RVHVCDVSE--AALAATAARLPGAKVTATVADVADPAQVERVFDTA   80 (264)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHH
Confidence            557999999999999999999998875       688888753  222211111111100 000000000011       


Q ss_pred             hhhcCCCcEEEEeCCCCCCCC----CcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           76 VEACTGVNIAVMVGGFPRKEG----MER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~~g----~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                      .+.+.++|+||+.+|.....+    .+.   .+.+..|......+.+.+    .+... ..++++.|.-...        
T Consensus        81 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~vv~~ss~~~~--------  151 (264)
T PRK12829         81 VERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGH-GGVIIALSSVAGR--------  151 (264)
T ss_pred             HHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CeEEEEecccccc--------
Confidence            122357899999998752221    122   234556666666555554    33222 1245554432210        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                       .++|....++.++-....+...+++++
T Consensus       152 -~~~~~~~~y~~~K~a~~~~~~~l~~~~  178 (264)
T PRK12829        152 -LGYPGRTPYAASKWAVVGLVKSLAIEL  178 (264)
T ss_pred             -cCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence             233333335555555555666666665

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.79  E-value=0.00027  Score=62.56  Aligned_cols=151  Identities=17%  Similarity=0.179  Sum_probs=79.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-CCcccEEEeCCh-------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDA-------   75 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-~~~~~v~~~~~~-------   75 (300)
                      +.++|.|+||+|.+|++++..|++.|.       ++++.++++.  . .....++..... ....++.-..+.       
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~-------~Vi~~~r~~~--~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   83 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA-------RVALLDRSED--V-AEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAV   83 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCHH--H-HHHHHHhhCCceEEEEecCCCHHHHHHHHHHH
Confidence            456899999999999999999998875       6888887532  1 111111111000 000011000011       


Q ss_pred             hhhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEecCchhhHHHHHHHHCCC
Q 022227           76 VEACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILKEFAPS  147 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~~~~~--~~~~viv~sNP~~~~~~~~~~~~~~  147 (300)
                      .+.+...|++|+++|......   .+.   ...+..|+.....+.+.+.++-.  ...++|++|.-...         .+
T Consensus        84 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~---------~~  154 (255)
T PRK06841         84 ISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGV---------VA  154 (255)
T ss_pred             HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhc---------cC
Confidence            112346799999998753211   111   23466777766666666554310  12356666643211         12


Q ss_pred             CCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          148 IPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       148 ~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .|..--++.++.....+.+.+|+++.
T Consensus       155 ~~~~~~Y~~sK~a~~~~~~~la~e~~  180 (255)
T PRK06841        155 LERHVAYCASKAGVVGMTKVLALEWG  180 (255)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            23222344555544555666666653

>PRK07024 short chain dehydrogenase; Provisional

Probab=97.78  E-value=0.00026  Score=62.98  Aligned_cols=148  Identities=18%  Similarity=0.195  Sum_probs=80.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh-cc-CCcccEEEeCChhhhc----
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AF-PLLKGVVATTDAVEAC----   79 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~-~~-~~~~~v~~~~~~~~a~----   79 (300)
                      ++|.||||+|.+|..++..|++.|.       +++++|.+.  ++++....++... .. ....+++-..+..+++    
T Consensus         3 ~~vlItGas~gIG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~   73 (257)
T PRK07024          3 LKVFITGASSGIGQALAREYARQGA-------TLGLVARRT--DALQAFAARLPKAARVSVYAADVRDADALAAAAADFI   73 (257)
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHH
Confidence            5899999999999999999998875       788998863  3443322222111 00 0001111111122222    


Q ss_pred             ---CCCcEEEEeCCCCCCCC----Cc---HHHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEecCchhhHHHHHHHHC
Q 022227           80 ---TGVNIAVMVGGFPRKEG----ME---RKDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        80 ---~~aDvVi~~ag~~~~~g----~~---r~dl~~~N~~i~~~i----~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                         ...|++|+.||......    .+   -...+..|+.....+    .+.+.+...  ..+|++++-...         
T Consensus        74 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~--~~iv~isS~~~~---------  142 (257)
T PRK07024         74 AAHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARR--GTLVGIASVAGV---------  142 (257)
T ss_pred             HhCCCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCC--CEEEEEechhhc---------
Confidence               23699999998743211    12   123455666555554    445555532  356666643321         


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .+.|..-.++.++.-...+...++.++.
T Consensus       143 ~~~~~~~~Y~asK~a~~~~~~~l~~e~~  170 (257)
T PRK07024        143 RGLPGAGAYSASKAAAIKYLESLRVELR  170 (257)
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHhh
Confidence            1233333466666666666666666553

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.78  E-value=0.00075  Score=61.64  Aligned_cols=151  Identities=16%  Similarity=0.137  Sum_probs=79.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh---
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE---   77 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~---   77 (300)
                      +.++|.|+||+|.+|..++..|+..|.       +|++++++.  ++++....++......   ...++.-..+..+   
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~-------~Vi~~~R~~--~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~  109 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGA-------TVVAVARRE--DLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVA  109 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence            346899999999999999999998775       789999863  4444332222211000   0001100011112   


Q ss_pred             ----hcCCCcEEEEeCCCCCCCC--C---cH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           78 ----ACTGVNIAVMVGGFPRKEG--M---ER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        78 ----a~~~aDvVi~~ag~~~~~g--~---~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                          .+...|++|++||......  +   +.   ...+..|.-.    .+.+.+.+.+...  ..+|++|+ ...     
T Consensus       110 ~~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~--g~iv~isS-~~~-----  181 (293)
T PRK05866        110 DVEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGD--GHIINVAT-WGV-----  181 (293)
T ss_pred             HHHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cEEEEECC-hhh-----
Confidence                2347899999998753211  1   11   2345556544    4444455555432  35666664 211     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                        .....|....++.++.-...+.+.++.++.
T Consensus       182 --~~~~~p~~~~Y~asKaal~~l~~~la~e~~  211 (293)
T PRK05866        182 --LSEASPLFSVYNASKAALSAVSRVIETEWG  211 (293)
T ss_pred             --cCCCCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence              101123222455555555566666666664

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.78  E-value=0.00011  Score=55.51  Aligned_cols=67  Identities=22%  Similarity=0.298  Sum_probs=44.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEE-ecCCchhhhhhhhhhhhhhccCCcccEEEeC-ChhhhcCCCcE
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMELVDAAFPLLKGVVATT-DAVEACTGVNI   84 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~-D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~-~~~~a~~~aDv   84 (300)
                      ||+||| +|.+|++++..|+..+. .   +.++.++ +.+  .++++..+.++.         +.... +..++++.+|+
T Consensus         1 kI~iIG-~G~mg~al~~~l~~~g~-~---~~~v~~~~~r~--~~~~~~~~~~~~---------~~~~~~~~~~~~~~adv   64 (96)
T PF03807_consen    1 KIGIIG-AGNMGSALARGLLASGI-K---PHEVIIVSSRS--PEKAAELAKEYG---------VQATADDNEEAAQEADV   64 (96)
T ss_dssp             EEEEES-TSHHHHHHHHHHHHTTS-----GGEEEEEEESS--HHHHHHHHHHCT---------TEEESEEHHHHHHHTSE
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCC-C---ceeEEeeccCc--HHHHHHHHHhhc---------cccccCChHHhhccCCE
Confidence            799999 79999999999998874 1   2267755 775  344433222221         11222 57888999999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      ||++.
T Consensus        65 vilav   69 (96)
T PF03807_consen   65 VILAV   69 (96)
T ss_dssp             EEE-S
T ss_pred             EEEEE
Confidence            99984

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=97.78  E-value=0.00048  Score=61.23  Aligned_cols=122  Identities=18%  Similarity=0.152  Sum_probs=69.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh---
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV---   76 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~---   76 (300)
                      .+.+++.|+||+|++|++++..|+..|.       ++++++.+.  ++++....++......   ...++.-..+..   
T Consensus        10 ~~~k~ilItGa~g~IG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~   80 (259)
T PRK08213         10 LSGKTALVTGGSRGLGLQIAEALGEAGA-------RVVLSARKA--EELEEAAAHLEALGIDALWIAADVADEADIERLA   80 (259)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHH
Confidence            3457899999999999999999998764       688888753  3333222222211000   000110000111   


Q ss_pred             ----hhcCCCcEEEEeCCCCCCCC---C---cHHHHHHhhHHHHHHHHHHHhhh---cCCCeEEEEecCc
Q 022227           77 ----EACTGVNIAVMVGGFPRKEG---M---ERKDVMSKNVSIYKAQASALEQH---AAPNCKVLVVANP  133 (300)
Q Consensus        77 ----~a~~~aDvVi~~ag~~~~~g---~---~r~dl~~~N~~i~~~i~~~i~~~---~~~~~~viv~sNP  133 (300)
                          +.+...|.||++||......   .   .-.+.++.|+.....+.+.+.++   ..+..+++++|+.
T Consensus        81 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~  150 (259)
T PRK08213         81 EETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASV  150 (259)
T ss_pred             HHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECCh
Confidence                11246799999998643211   1   11345678888888888876554   1112356666653

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=97.77  E-value=0.00098  Score=63.49  Aligned_cols=76  Identities=18%  Similarity=0.180  Sum_probs=49.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC--------CcccEEEeCChhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--------LLKGVVATTDAVE   77 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~--------~~~~v~~~~~~~~   77 (300)
                      |||+|+| +|.||..++..++. |.       +++.+|+++  ++++...........+        ...+++.+++..+
T Consensus         1 mkI~VIG-lGyvGl~~A~~lA~-G~-------~VigvD~d~--~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~   69 (388)
T PRK15057          1 MKITISG-TGYVGLSNGLLIAQ-NH-------EVVALDILP--SRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE   69 (388)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHh-CC-------cEEEEECCH--HHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh
Confidence            4899999 89999999976664 53       799999974  4443221111000000        1234555666778


Q ss_pred             hcCCCcEEEEeCCCC
Q 022227           78 ACTGVNIAVMVGGFP   92 (300)
Q Consensus        78 a~~~aDvVi~~ag~~   92 (300)
                      +.++||+||++...|
T Consensus        70 ~~~~ad~vii~Vpt~   84 (388)
T PRK15057         70 AYRDADYVIIATPTD   84 (388)
T ss_pred             hhcCCCEEEEeCCCC
Confidence            889999999986554

>PRK05876 short chain dehydrogenase; Provisional

Probab=97.76  E-value=0.00033  Score=63.34  Aligned_cols=150  Identities=14%  Similarity=0.097  Sum_probs=79.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh---
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE---   77 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~---   77 (300)
                      +.+.+.||||+|.+|++++..|+..|.       ++++.|.++  +.++....++......   ...++.-..+..+   
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~-------~Vv~~~r~~--~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~   75 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGA-------RVVLGDVDK--PGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLAD   75 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence            456799999999999999999998875       788898763  3444333333211100   0011111111111   


Q ss_pred             ----hcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           78 ----ACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        78 ----a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                          .+...|++|+.||.....   ..+.   ...+..|+.....+.+.+    .+.+. ...+|++|+-...       
T Consensus        76 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~-~g~iv~isS~~~~-------  147 (275)
T PRK05876         76 EAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGT-GGHVVFTASFAGL-------  147 (275)
T ss_pred             HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CCEEEEeCChhhc-------
Confidence                223579999999874311   1222   234566766555555444    34432 2356666653221       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                        .+.|..-.++.++.-...+...++.++
T Consensus       148 --~~~~~~~~Y~asK~a~~~~~~~l~~e~  174 (275)
T PRK05876        148 --VPNAGLGAYGVAKYGVVGLAETLAREV  174 (275)
T ss_pred             --cCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence              122322234555554444555555555

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=97.76  E-value=8.5e-05  Score=68.59  Aligned_cols=120  Identities=13%  Similarity=0.036  Sum_probs=65.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhhc-
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC-   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a~-   79 (300)
                      +.++|+||||+|+||.+++..|+..|.       +|++.+++.  ++++....++......   ...++.-..+..+++ 
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~   75 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW-------HVIMACRNL--KKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVD   75 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHH
Confidence            567899999999999999999998874       788888753  3443222222110000   000110001111222 


Q ss_pred             ------CCCcEEEEeCCCCCC----CCCcH---HHHHHhhHHHHHHHH----HHHhhhcCCCeEEEEecC
Q 022227           80 ------TGVNIAVMVGGFPRK----EGMER---KDVMSKNVSIYKAQA----SALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        80 ------~~aDvVi~~ag~~~~----~g~~r---~dl~~~N~~i~~~i~----~~i~~~~~~~~~viv~sN  132 (300)
                            ...|++|+.||....    ...+.   ...+..|......+.    +.+++...+..++|++|+
T Consensus        76 ~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS  145 (322)
T PRK07453         76 DFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGT  145 (322)
T ss_pred             HHHHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcc
Confidence                  248999999986321    12222   334667766554444    444443221236777664

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=97.76  E-value=0.00017  Score=69.01  Aligned_cols=103  Identities=17%  Similarity=0.118  Sum_probs=61.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC---cccEEEeCChhhhc
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAVEAC   79 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~---~~~v~~~~~~~~a~   79 (300)
                      .+.++|+||||+|.+|.+++..|++.|.       ++++++.++  +++...   +.+.....   ..++.-..+..+.+
T Consensus       176 l~gK~VLITGASgGIG~aLA~~La~~G~-------~Vi~l~r~~--~~l~~~---~~~~~~~v~~v~~Dvsd~~~v~~~l  243 (406)
T PRK07424        176 LKGKTVAVTGASGTLGQALLKELHQQGA-------KVVALTSNS--DKITLE---INGEDLPVKTLHWQVGQEAALAELL  243 (406)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHH---HhhcCCCeEEEEeeCCCHHHHHHHh
Confidence            4567899999999999999999998774       688888753  233211   11100000   00111011233456


Q ss_pred             CCCcEEEEeCCCCCCCCCcH---HHHHHhhHHHHHHHHHHH
Q 022227           80 TGVNIAVMVGGFPRKEGMER---KDVMSKNVSIYKAQASAL  117 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~g~~r---~dl~~~N~~i~~~i~~~i  117 (300)
                      .+.|++|+.||.......+.   .+.++.|......+.+.+
T Consensus       244 ~~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~  284 (406)
T PRK07424        244 EKVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELF  284 (406)
T ss_pred             CCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999998754333332   345667776655555554

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=97.76  E-value=0.0016  Score=57.35  Aligned_cols=155  Identities=17%  Similarity=0.183  Sum_probs=82.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc----ccEEEeC------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL----KGVVATT------   73 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~----~~v~~~~------   73 (300)
                      +.++|.|+||+|++|.+++..|++.|.       +++++|++.  +.++....++.+......    .++....      
T Consensus        11 ~~k~vlItG~~g~iG~~la~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~   81 (247)
T PRK08945         11 KDRIILVTGAGDGIGREAALTYARHGA-------TVILLGRTE--EKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQ   81 (247)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-------cEEEEeCCH--HHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHH
Confidence            356899999999999999999998774       688999863  334333334433211100    0110000      


Q ss_pred             ---ChhhhcCCCcEEEEeCCCCCC--C--CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHH
Q 022227           74 ---DAVEACTGVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNAL  139 (300)
Q Consensus        74 ---~~~~a~~~aDvVi~~ag~~~~--~--g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~  139 (300)
                         ...+.+...|+||+.||....  +  ..+.   ...+..|+.....+.+.+    .+..  ...++++|+....   
T Consensus        82 ~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~--~~~iv~~ss~~~~---  156 (247)
T PRK08945         82 LADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSP--AASLVFTSSSVGR---  156 (247)
T ss_pred             HHHHHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC--CCEEEEEccHhhc---
Confidence               112233468999999986421  1  2222   334667776655555444    3332  2356666653321   


Q ss_pred             HHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       140 ~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                            .+.+....++.++.-...+...+++.+.  ...++
T Consensus       157 ------~~~~~~~~Y~~sK~a~~~~~~~~~~~~~--~~~i~  189 (247)
T PRK08945        157 ------QGRANWGAYAVSKFATEGMMQVLADEYQ--GTNLR  189 (247)
T ss_pred             ------CCCCCCcccHHHHHHHHHHHHHHHHHhc--ccCEE
Confidence                  1222222355555444455555666553  23454

>PRK12744 short chain dehydrogenase; Provisional

Probab=97.74  E-value=0.00061  Score=60.53  Aligned_cols=153  Identities=11%  Similarity=0.058  Sum_probs=80.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC--chhhhhhhhhhhhhhccC---CcccEEEeCChhhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFP---LLKGVVATTDAVEA   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~--~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a   78 (300)
                      +.+++.|+||+|.+|.+++..|+..|.       ++++++...  +.+.++....++......   ...++.-..+..+.
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~-------~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~   79 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGA-------KAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKL   79 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-------cEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHH
Confidence            446899999999999999999998774       555554321  122222222222211000   00111111111111


Q ss_pred             -------cCCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEe-cCchhhHHHHHHHH
Q 022227           79 -------CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVV-ANPANTNALILKEF  144 (300)
Q Consensus        79 -------~~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~-sNP~~~~~~~~~~~  144 (300)
                             +...|++|+.||.....   ..+   -...+..|+.....+.+.+.+.-.+...++++ +..+..        
T Consensus        80 ~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~--------  151 (257)
T PRK12744         80 FDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGA--------  151 (257)
T ss_pred             HHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcc--------
Confidence                   34689999999874321   112   23456677766666666555432112234444 332221        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                        ..|....++.++.-...+.+.++++++
T Consensus       152 --~~~~~~~Y~~sK~a~~~~~~~la~e~~  178 (257)
T PRK12744        152 --FTPFYSAYAGSKAPVEHFTRAASKEFG  178 (257)
T ss_pred             --cCCCcccchhhHHHHHHHHHHHHHHhC
Confidence              012223467777777788888888876

>PRK12827 short chain dehydrogenase; Provisional

Probab=97.74  E-value=0.0017  Score=56.90  Aligned_cols=151  Identities=19%  Similarity=0.194  Sum_probs=79.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC--chhhhhhhhhhhhhhccC---CcccEEEeCChhhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFP---LLKGVVATTDAVEA   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~--~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a   78 (300)
                      +.++|.|+||+|++|++++..|++.|.       ++++++...  +.+.++....++......   ...++.-..+..+.
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~   77 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGA-------DVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAA   77 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-------eEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHH
Confidence            567999999999999999999998775       678876531  122222111122111000   00000000011122


Q ss_pred             -------cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHh-----hhcCCCeEEEEecCchhhHHHH
Q 022227           79 -------CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALE-----QHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        79 -------~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~-----~~~~~~~~viv~sNP~~~~~~~  140 (300)
                             ....|+||+++|.....   ..+.   ...+..|......+++.+.     +..  ..++++++.....    
T Consensus        78 ~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~~iv~~sS~~~~----  151 (249)
T PRK12827         78 LDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARR--GGRIVNIASVAGV----  151 (249)
T ss_pred             HHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCC--CeEEEEECCchhc----
Confidence                   24689999999875421   1122   2346778888888887776     222  2356666654321    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                           .+.+...-++.++.-...+.+.+++.+
T Consensus       152 -----~~~~~~~~y~~sK~a~~~~~~~l~~~~  178 (249)
T PRK12827        152 -----RGNRGQVNYAASKAGLIGLTKTLANEL  178 (249)
T ss_pred             -----CCCCCCchhHHHHHHHHHHHHHHHHHh
Confidence                 112222234555444444455566554

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.74  E-value=0.00039  Score=65.08  Aligned_cols=115  Identities=21%  Similarity=0.236  Sum_probs=70.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh-----ccCCcccEEEeCChhh
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-----AFPLLKGVVATTDAVE   77 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~-----~~~~~~~v~~~~~~~~   77 (300)
                      +.++||+|+| +|.+|+.++..|...+        .++++..++  +..+....+-...     ...+..++..+++..+
T Consensus         5 ~~~mkI~IiG-aGa~G~alA~~La~~g--------~v~l~~~~~--~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~   73 (341)
T PRK12439          5 KREPKVVVLG-GGSWGTTVASICARRG--------PTLQWVRSA--ETADDINDNHRNSRYLGNDVVLSDTLRATTDFAE   73 (341)
T ss_pred             cCCCeEEEEC-CCHHHHHHHHHHHHCC--------CEEEEeCCH--HHHHHHHhcCCCcccCCCCcccCCCeEEECCHHH
Confidence            3568999999 7999999999998764        255666542  3222111110000     1112235667788888


Q ss_pred             hcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh-----HHHHHHHH
Q 022227           78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT-----NALILKEF  144 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~-----~~~~~~~~  144 (300)
                      +++++|+||++.  |              ...++++++.+..+-+++..+|.++|-.+.     +..++.+.
T Consensus        74 a~~~aDlVilav--p--------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~  129 (341)
T PRK12439         74 AANCADVVVMGV--P--------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEV  129 (341)
T ss_pred             HHhcCCEEEEEe--C--------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHH
Confidence            899999999973  1              234556666666554445567888886652     34455554

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=97.74  E-value=0.00017  Score=65.33  Aligned_cols=94  Identities=10%  Similarity=0.133  Sum_probs=57.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhh---hhhhhhhhhhccCCcccEEEeCChhhhc----
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEAL---NGVKMELVDAAFPLLKGVVATTDAVEAC----   79 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l---~g~~~dl~~~~~~~~~~v~~~~~~~~a~----   79 (300)
                      ||+|+||+|++|++++..|++.|.       +++.+.++++....   +....|+.|..           .+.+++    
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~-------~V~~~~R~~~~~~~~~~~~~~~d~~d~~-----------~l~~a~~~~~   62 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASV-------PFLVASRSSSSSAGPNEKHVKFDWLDED-----------TWDNPFSSDD   62 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCC-------cEEEEeCCCccccCCCCccccccCCCHH-----------HHHHHHhccc
Confidence            589999999999999999998764       67777775421111   11222333322           344555    


Q ss_pred             --CC-CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEec
Q 022227           80 --TG-VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA  131 (300)
Q Consensus        80 --~~-aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~s  131 (300)
                        ++ +|.|+++++...    +.       ....+++++++++.+-+  ++|..|
T Consensus        63 ~~~g~~d~v~~~~~~~~----~~-------~~~~~~~i~aa~~~gv~--~~V~~S  104 (285)
T TIGR03649        63 GMEPEISAVYLVAPPIP----DL-------APPMIKFIDFARSKGVR--RFVLLS  104 (285)
T ss_pred             CcCCceeEEEEeCCCCC----Ch-------hHHHHHHHHHHHHcCCC--EEEEee
Confidence              67 999999875321    11       13345677777776532  455554

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.74  E-value=0.00017  Score=62.90  Aligned_cols=121  Identities=13%  Similarity=0.083  Sum_probs=65.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-cccEEEeCChh-----
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAV-----   76 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-~~~v~~~~~~~-----   76 (300)
                      .+.++|+|+||+|.+|++++..|++.|.       ++++++.++  ++......++....... ..++.-..+..     
T Consensus         5 ~~~k~vlItGatg~iG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   75 (239)
T PRK12828          5 LQGKVVAITGGFGGLGRATAAWLAARGA-------RVALIGRGA--APLSQTLPGVPADALRIGGIDLVDPQAARRAVDE   75 (239)
T ss_pred             CCCCEEEEECCCCcHhHHHHHHHHHCCC-------eEEEEeCCh--HhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHH
Confidence            3457999999999999999999998875       689998854  22221111221111000 00110001111     


Q ss_pred             --hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhh---cCCCeEEEEecCc
Q 022227           77 --EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQH---AAPNCKVLVVANP  133 (300)
Q Consensus        77 --~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~---~~~~~~viv~sNP  133 (300)
                        +.+...|+||+.+|.....   ..+.   .+.+..|......+.+.+.+.   .+ ..+++++|.-
T Consensus        76 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~  142 (239)
T PRK12828         76 VNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASG-GGRIVNIGAG  142 (239)
T ss_pred             HHHHhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcC-CCEEEEECch
Confidence              2234689999998864211   1122   234556766666666655432   12 2356666653

>PRK06701 short chain dehydrogenase; Provisional

Probab=97.74  E-value=0.00054  Score=62.46  Aligned_cols=122  Identities=16%  Similarity=0.170  Sum_probs=69.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh--
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a--   78 (300)
                      +.+++.|+||+|.+|++++..|++.|.       ++++++.++. +.++.....+......   ...++.-..+..+.  
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~-------~V~l~~r~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~  116 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGA-------DIAIVYLDEH-EDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVE  116 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCcc-hHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence            346899999999999999999998775       7888887632 1222222222111000   00011001111122  


Q ss_pred             -----cCCCcEEEEeCCCCCC--C--CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCc
Q 022227           79 -----CTGVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        79 -----~~~aDvVi~~ag~~~~--~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                           +...|+||+.||....  +  ..+.   ...+..|+.....+.+.+.+.-.+...+|++|+-
T Consensus       117 ~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~  183 (290)
T PRK06701        117 ETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSI  183 (290)
T ss_pred             HHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecc
Confidence                 2357999999986421  1  1122   3457788888888888776642123356666653

>PRK09134 short chain dehydrogenase; Provisional

Probab=97.73  E-value=0.00025  Score=63.11  Aligned_cols=153  Identities=16%  Similarity=0.116  Sum_probs=77.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh--
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a--   78 (300)
                      ..+++.|+||+|++|.+++..|++.|.       .+++.+... .+.++....++......   ...++.-..+..++  
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   79 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGF-------DVAVHYNRS-RDEAEALAAEIRALGRRAVALQADLADEAEVRALVA   79 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence            346899999999999999999998774       566665532 22232222222111100   00011101111222  


Q ss_pred             -----cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcCC--CeEEEEecCchhhHHHHHHHHC
Q 022227           79 -----CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAAP--NCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        79 -----~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~~--~~~viv~sNP~~~~~~~~~~~~  145 (300)
                           +...|+||++||.....   ..+.   ...+..|+.....+.+.+.++.++  ...+++++....        . 
T Consensus        80 ~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~--------~-  150 (258)
T PRK09134         80 RASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRV--------W-  150 (258)
T ss_pred             HHHHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhh--------c-
Confidence                 23479999999864321   1122   345677877666666665543221  234554442110        0 


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ...|....|+.++.-...+.+.++++++
T Consensus       151 ~~~p~~~~Y~~sK~a~~~~~~~la~~~~  178 (258)
T PRK09134        151 NLNPDFLSYTLSKAALWTATRTLAQALA  178 (258)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            1112112345555555566666777664

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=97.73  E-value=0.0016  Score=57.69  Aligned_cols=148  Identities=11%  Similarity=0.118  Sum_probs=77.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-C----CcccEEEeCChhhh--
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-P----LLKGVVATTDAVEA--   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-~----~~~~v~~~~~~~~a--   78 (300)
                      ++|.|+||+|++|++++..|++.|.       +++++|.+.  +.++....++..... .    ...+++-..+...+  
T Consensus         3 k~ilItG~~~~IG~~la~~l~~~g~-------~vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~   73 (259)
T PRK12384          3 QVAVVIGGGQTLGAFLCHGLAEEGY-------RVAVADINS--EKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSR   73 (259)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHH
Confidence            4799999999999999999998875       789999753  333322222221100 0    00011100011111  


Q ss_pred             -----cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           79 -----CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        79 -----~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                           +...|+||++||.....   ..+.   ...+..|+...    +.+.+.+.+... ..++|.+|+....       
T Consensus        74 ~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~-~~~iv~~ss~~~~-------  145 (259)
T PRK12384         74 GVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGI-QGRIIQINSKSGK-------  145 (259)
T ss_pred             HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCC-CcEEEEecCcccc-------
Confidence                 24579999999875422   1222   23355666553    444454444432 2367777664321       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                      +  +.+...-++.++.....+.+.+++++
T Consensus       146 ~--~~~~~~~Y~~sKaa~~~l~~~la~e~  172 (259)
T PRK12384        146 V--GSKHNSGYSAAKFGGVGLTQSLALDL  172 (259)
T ss_pred             c--CCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            1  11212234555554445555566554

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=97.73  E-value=0.00052  Score=61.35  Aligned_cols=151  Identities=13%  Similarity=0.140  Sum_probs=81.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCCh----
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDA----   75 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~----   75 (300)
                      ++.+++.|+||+|.+|.+++..|+..|.       ++++.+.++  ++++....++......   ...++.-..+.    
T Consensus         8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~-------~vv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~   78 (265)
T PRK07097          8 LKGKIALITGASYGIGFAIAKAYAKAGA-------TIVFNDINQ--ELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMV   78 (265)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence            3456899999999999999999998775       688888753  3443332233221100   00111000011    


Q ss_pred             ---hhhcCCCcEEEEeCCCCCC-C--CCcH---HHHHHhhHHHHH----HHHHHHhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           76 ---VEACTGVNIAVMVGGFPRK-E--GMER---KDVMSKNVSIYK----AQASALEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        76 ---~~a~~~aDvVi~~ag~~~~-~--g~~r---~dl~~~N~~i~~----~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                         .+.+...|++|++||.... +  ..+.   ...+..|.....    .+.+.+.+..  ..++|++++....      
T Consensus        79 ~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~------  150 (265)
T PRK07097         79 SQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKG--HGKIINICSMMSE------  150 (265)
T ss_pred             HHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC--CcEEEEEcCcccc------
Confidence               1223457999999987431 1  1111   233455655444    3444444432  3467777764421      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                         .+.+....++.++.-...+.+.+++.++
T Consensus       151 ---~~~~~~~~Y~~sKaal~~l~~~la~e~~  178 (265)
T PRK07097        151 ---LGRETVSAYAAAKGGLKMLTKNIASEYG  178 (265)
T ss_pred             ---CCCCCCccHHHHHHHHHHHHHHHHHHhh
Confidence               1222223456666655667777777764

>PRK07102 short chain dehydrogenase; Provisional

Probab=97.72  E-value=0.0014  Score=57.63  Aligned_cols=149  Identities=13%  Similarity=0.060  Sum_probs=79.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC----cccEEEeCChhhhc--
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL----LKGVVATTDAVEAC--   79 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~----~~~v~~~~~~~~a~--   79 (300)
                      ++|.|+||+|++|..++..|++.|.       +|+++|+++  ++++....++.......    ..++.-..+..+.+  
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~   72 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-------RLYLAARDV--ERLERLADDLRARGAVAVSTHELDILDTASHAAFLDS   72 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHH
Confidence            5899999999999999999998875       688888864  33333222332111000    01111111122222  


Q ss_pred             --CCCcEEEEeCCCCCC---CCCcH---HHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEecCchhhHHHHHHHHCCCCC
Q 022227           80 --TGVNIAVMVGGFPRK---EGMER---KDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILKEFAPSIP  149 (300)
Q Consensus        80 --~~aDvVi~~ag~~~~---~g~~r---~dl~~~N~~i~~~i~~~i~~~~~--~~~~viv~sNP~~~~~~~~~~~~~~~p  149 (300)
                        +..|++|+.+|....   ...+.   .+.+..|+.....+.+.+.++-.  +...++++|.....         .+.|
T Consensus        73 ~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~---------~~~~  143 (243)
T PRK07102         73 LPALPDIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGD---------RGRA  143 (243)
T ss_pred             HhhcCCEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEeccccc---------CCCC
Confidence              245999999886421   12222   24566777766666665544311  12356666653321         1222


Q ss_pred             CCcEEeeehhhHHHHHHHHHHHc
Q 022227          150 AKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       150 ~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                      ..-.++.++.-...+...++.++
T Consensus       144 ~~~~Y~~sK~a~~~~~~~l~~el  166 (243)
T PRK07102        144 SNYVYGSAKAALTAFLSGLRNRL  166 (243)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            22235555554445555565554

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.72  E-value=0.0005  Score=60.79  Aligned_cols=150  Identities=18%  Similarity=0.206  Sum_probs=77.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCCh-------
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDA-------   75 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~-------   75 (300)
                      ++|.|+||+|++|++++..|++.|.       +++++|.... +.+.....++......   ...+++-..+.       
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~-------~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   74 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF-------DLAINDRPDD-EELAATQQELRALGVEVIFFPADVADLSAHEAMLDAA   74 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEecCch-hHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence            4799999999999999999998874       7888886531 2222111122111100   00111101111       


Q ss_pred             hhhcCCCcEEEEeCCCCCC---C--CCcH---HHHHHhhHHHHHHHHHHHhhh----cC-C---CeEEEEecCchhhHHH
Q 022227           76 VEACTGVNIAVMVGGFPRK---E--GMER---KDVMSKNVSIYKAQASALEQH----AA-P---NCKVLVVANPANTNAL  139 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~---~--g~~r---~dl~~~N~~i~~~i~~~i~~~----~~-~---~~~viv~sNP~~~~~~  139 (300)
                      .+.+...|+||++||....   +  ..+.   .+.+..|+.....+.+.+.++    .. .   ...++++|+....   
T Consensus        75 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~---  151 (256)
T PRK12745         75 QAAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAI---  151 (256)
T ss_pred             HHhcCCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhc---
Confidence            1112468999999987431   1  1122   234667776666665554332    21 0   1235665543321   


Q ss_pred             HHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       140 ~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                            .+.+....++.++.-...+...+++++
T Consensus       152 ------~~~~~~~~Y~~sK~a~~~~~~~l~~~~  178 (256)
T PRK12745        152 ------MVSPNRGEYCISKAGLSMAAQLFAARL  178 (256)
T ss_pred             ------cCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence                  122323345666665566666677654

>PRK06523 short chain dehydrogenase; Provisional

Probab=97.72  E-value=0.00025  Score=63.00  Aligned_cols=152  Identities=18%  Similarity=0.170  Sum_probs=82.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhh---hhhhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA---LNGVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~---l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      .++|.|+||+|.||+.++..|+..|.       ++++++.++....   ......|+.+....  ..+  .....+.+..
T Consensus         9 ~k~vlItGas~gIG~~ia~~l~~~G~-------~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~--~~~--~~~~~~~~~~   77 (260)
T PRK06523          9 GKRALVTGGTKGIGAATVARLLEAGA-------RVVTTARSRPDDLPEGVEFVAADLTTAEGC--AAV--ARAVLERLGG   77 (260)
T ss_pred             CCEEEEECCCCchhHHHHHHHHHCCC-------EEEEEeCChhhhcCCceeEEecCCCCHHHH--HHH--HHHHHHHcCC
Confidence            47899999999999999999998775       6888887542110   11112233222100  000  0012233567


Q ss_pred             CcEEEEeCCCCCCC-----CCcH---HHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCC
Q 022227           82 VNIAVMVGGFPRKE-----GMER---KDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIP  149 (300)
Q Consensus        82 aDvVi~~ag~~~~~-----g~~r---~dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p  149 (300)
                      .|+||+.||.....     ..+.   .+.+..|+...    +.+.+.+.+...  .++|++|+....         ...+
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--g~ii~isS~~~~---------~~~~  146 (260)
T PRK06523         78 VDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGS--GVIIHVTSIQRR---------LPLP  146 (260)
T ss_pred             CCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCC--cEEEEEeccccc---------CCCC
Confidence            89999999864211     1121   23455665544    444555555432  357777764321         1122


Q ss_pred             -CCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          150 -AKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       150 -~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                       ....++.++.-...+.+.++++++  +..|+
T Consensus       147 ~~~~~Y~~sK~a~~~l~~~~a~~~~--~~gi~  176 (260)
T PRK06523        147 ESTTAYAAAKAALSTYSKSLSKEVA--PKGVR  176 (260)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHh--hcCcE
Confidence             122455566555666667777654  34454

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=97.72  E-value=0.00078  Score=59.27  Aligned_cols=120  Identities=22%  Similarity=0.197  Sum_probs=65.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh--
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a--   78 (300)
                      +.+++.|+||+|.+|++++..|++.|.       ++++.+... .+.++....++.+....   ...++.-.....++  
T Consensus         5 ~~~~~lItG~s~~iG~~la~~l~~~g~-------~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~   76 (247)
T PRK12935          5 NGKVAIVTGGAKGIGKAITVALAQEGA-------KVVINYNSS-KEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVE   76 (247)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCC-------EEEEEcCCc-HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence            457899999999999999999998774       565554321 23333222233221100   00011101111222  


Q ss_pred             -----cCCCcEEEEeCCCCCCCC------CcHHHHHHhhHHHHHHHHHHHhhh---cCCCeEEEEecC
Q 022227           79 -----CTGVNIAVMVGGFPRKEG------MERKDVMSKNVSIYKAQASALEQH---AAPNCKVLVVAN  132 (300)
Q Consensus        79 -----~~~aDvVi~~ag~~~~~g------~~r~dl~~~N~~i~~~i~~~i~~~---~~~~~~viv~sN  132 (300)
                           +...|+||++||......      +.-.+.+..|+.....+.+.+.++   .. ..+++++|+
T Consensus        77 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS  143 (247)
T PRK12935         77 EAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAE-EGRIISISS  143 (247)
T ss_pred             HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcc
Confidence                 234799999998754221      122345677877766666666543   12 235666665

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=97.71  E-value=5.5e-05  Score=67.43  Aligned_cols=168  Identities=16%  Similarity=0.136  Sum_probs=82.1

Q ss_pred             EEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh-hhhhhhhhcc--C----CcccEEE-eCC-------
Q 022227           10 VTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG-VKMELVDAAF--P----LLKGVVA-TTD-------   74 (300)
Q Consensus        10 IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g-~~~dl~~~~~--~----~~~~v~~-~~~-------   74 (300)
                      ||||+||+|++++..|+..+-   +  ++|+++-+.++...+.. ....+.+...  .    ...++++ ..|       
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~---~--~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lG   75 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPP---D--VKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLG   75 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS----T--TEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG
T ss_pred             CcCCCcHHHHHHHHHHHcCCC---C--cEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccC
Confidence            799999999999999997642   0  15666655432211111 1011111000  0    0112221 112       


Q ss_pred             ----hhhhc-CCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHH-------
Q 022227           75 ----AVEAC-TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK-------  142 (300)
Q Consensus        75 ----~~~a~-~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~-------  142 (300)
                          .++.+ +.+|+|||+|+.-.-. .+..++...|+..++++++.+.+...  .+++.+|. .-+......       
T Consensus        76 L~~~~~~~L~~~v~~IiH~Aa~v~~~-~~~~~~~~~NV~gt~~ll~la~~~~~--~~~~~iST-a~v~~~~~~~~~~~~~  151 (249)
T PF07993_consen   76 LSDEDYQELAEEVDVIIHCAASVNFN-APYSELRAVNVDGTRNLLRLAAQGKR--KRFHYIST-AYVAGSRPGTIEEKVY  151 (249)
T ss_dssp             --HHHHHHHHHH--EEEE--SS-SBS--S--EEHHHHHHHHHHHHHHHTSSS-----EEEEEE-GGGTTS-TTT--SSS-
T ss_pred             CChHHhhccccccceeeecchhhhhc-ccchhhhhhHHHHHHHHHHHHHhccC--cceEEecc-ccccCCCCCccccccc
Confidence                22333 6899999998764322 23445778899999999999986543  26777775 211111100       


Q ss_pred             -HHCCCC-CCCc---EEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEec
Q 022227          143 -EFAPSI-PAKN---ITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG  186 (300)
Q Consensus       143 -~~~~~~-p~~~---i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G  186 (300)
                       ...... +...   -|..++...+++....+++.|++..-+|--.|.|
T Consensus       152 ~~~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g  200 (249)
T PF07993_consen  152 PEEEDDLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVG  200 (249)
T ss_dssp             HHH--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-
T ss_pred             ccccccchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccc
Confidence             000001 1112   3556889899998888888899988888777666

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=97.70  E-value=0.00041  Score=61.16  Aligned_cols=116  Identities=18%  Similarity=0.192  Sum_probs=64.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC---cccEEEeC-------Ch
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATT-------DA   75 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~---~~~v~~~~-------~~   75 (300)
                      ++|.|+||+|++|+.++..|+..|.       +++++++++  +..+....++.......   ..++.-..       ..
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   72 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA-------NVVVNDLGE--AGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAA   72 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH
Confidence            4799999999999999999998775       788998863  22222221221110000   00110000       12


Q ss_pred             hhhcCCCcEEEEeCCCCCC-C--CCc---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecC
Q 022227           76 VEACTGVNIAVMVGGFPRK-E--GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVAN  132 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~-~--g~~---r~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sN  132 (300)
                      .+.+.+.|+||+.+|.... +  ..+   -...+..|......+.+.+    ++...  .+++++|+
T Consensus        73 ~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~--~~~v~~ss  137 (255)
T TIGR01963        73 AAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGW--GRIINIAS  137 (255)
T ss_pred             HHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--eEEEEEcc
Confidence            2335678999999986421 1  111   1234556776655555555    44432  25666654

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK06914 short chain dehydrogenase; Provisional

Probab=97.70  E-value=0.00032  Score=63.12  Aligned_cols=146  Identities=11%  Similarity=0.122  Sum_probs=75.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc--C---CcccEEEeCC------
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--P---LLKGVVATTD------   74 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~--~---~~~~v~~~~~------   74 (300)
                      +++.||||+|++|++++..|+..|.       .|++++.++  +.++....++.+...  .   ...++.-..+      
T Consensus         4 k~~lItGasg~iG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~   74 (280)
T PRK06914          4 KIAIVTGASSGFGLLTTLELAKKGY-------LVIATMRNP--EKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQL   74 (280)
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHH
Confidence            4799999999999999999998875       688888753  333222211211100  0   0001100001      


Q ss_pred             hhhhcCCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           75 AVEACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                      ..+.+...|+||++||.....   ..+   -.+.+..|......+.+.    +++...  ..++++|+-...        
T Consensus        75 ~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~vsS~~~~--------  144 (280)
T PRK06914         75 VLKEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKS--GKIINISSISGR--------  144 (280)
T ss_pred             HHHhcCCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CEEEEECccccc--------
Confidence            111234579999999875421   111   123456777665555555    444432  345665543221        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHH
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEK  171 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~  171 (300)
                       .+.+....++.++.....+...++.+
T Consensus       145 -~~~~~~~~Y~~sK~~~~~~~~~l~~~  170 (280)
T PRK06914        145 -VGFPGLSPYVSSKYALEGFSESLRLE  170 (280)
T ss_pred             -CCCCCCchhHHhHHHHHHHHHHHHHH
Confidence             12232233455555444555555544

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.70  E-value=0.0005  Score=63.76  Aligned_cols=104  Identities=11%  Similarity=0.213  Sum_probs=63.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc----cCCcccEEEeCChhhhc-C
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA----FPLLKGVVATTDAVEAC-T   80 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~----~~~~~~v~~~~~~~~a~-~   80 (300)
                      |||+|+| +|.+|+.++..|.+.|.       +|.|+++++  +.++....+-.+..    .....++..+++..+++ .
T Consensus         1 MkI~IiG-aGa~G~ala~~L~~~g~-------~V~l~~r~~--~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   70 (326)
T PRK14620          1 MKISILG-AGSFGTAIAIALSSKKI-------SVNLWGRNH--TTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD   70 (326)
T ss_pred             CEEEEEC-cCHHHHHHHHHHHHCCC-------eEEEEecCH--HHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC
Confidence            4899999 79999999999998763       788999853  33332211100111    01223566677777776 5


Q ss_pred             CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhh-hcCCCeEEEEecCchh
Q 022227           81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQ-HAAPNCKVLVVANPAN  135 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~-~~~~~~~viv~sNP~~  135 (300)
                      ++|+||++.     +           ...+.++++.+.. +-.++..+|..+|=.+
T Consensus        71 ~~Dliiiav-----k-----------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~  110 (326)
T PRK14620         71 NATCIILAV-----P-----------TQQLRTICQQLQDCHLKKNTPILICSKGIE  110 (326)
T ss_pred             CCCEEEEEe-----C-----------HHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence            899999983     1           1233445555554 3233555777787653

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.70  E-value=0.00021  Score=66.65  Aligned_cols=106  Identities=22%  Similarity=0.229  Sum_probs=61.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc----CCcccEEEeCChhhhcCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF----PLLKGVVATTDAVEACTG   81 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~----~~~~~v~~~~~~~~a~~~   81 (300)
                      |||+|+| +|.+|+.++..|...|.       +|.++|+++..+.+......+.+...    ....++..+++. +++++
T Consensus         3 mkI~IiG-~G~mG~~~A~~L~~~G~-------~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   73 (341)
T PRK08229          3 ARICVLG-AGSIGCYLGGRLAAAGA-------DVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALAT   73 (341)
T ss_pred             ceEEEEC-CCHHHHHHHHHHHhcCC-------cEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccC
Confidence            6899999 79999999999998774       68899975311111100000100000    001234445554 67899


Q ss_pred             CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh
Q 022227           82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT  136 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~  136 (300)
                      +|+||++...+.                ..++++.+....+++..++..+|....
T Consensus        74 ~D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~  112 (341)
T PRK08229         74 ADLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRN  112 (341)
T ss_pred             CCEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence            999999852211                123334454444445667777887653

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=97.70  E-value=0.00051  Score=66.01  Aligned_cols=107  Identities=17%  Similarity=0.109  Sum_probs=62.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC----------CcccEEEeCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----------LLKGVVATTD   74 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~----------~~~~v~~~~~   74 (300)
                      .+||+|+| .|.+|..++..|+..|.       +++.+|+++  ++++.......+...+          ....+..+++
T Consensus         3 ~~kI~VIG-lG~~G~~~A~~La~~G~-------~V~~~D~~~--~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~   72 (415)
T PRK11064          3 FETISVIG-LGYIGLPTAAAFASRQK-------QVIGVDINQ--HAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTT   72 (415)
T ss_pred             ccEEEEEC-cchhhHHHHHHHHhCCC-------EEEEEeCCH--HHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecc
Confidence            47999999 89999999999998874       799999964  4444221100000000          0122333332


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEec
Q 022227           75 AVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA  131 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~s  131 (300)
                          .++||+||++...|..+..      ..++..+.+.++.+.++.+++..+|+-|
T Consensus        73 ----~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~S  119 (415)
T PRK11064         73 ----PEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILES  119 (415)
T ss_pred             ----cccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeC
Confidence                4589999999877643221      1123344455555655555555444444

>PRK07985 oxidoreductase; Provisional

Probab=97.69  E-value=0.00096  Score=60.90  Aligned_cols=151  Identities=16%  Similarity=0.127  Sum_probs=82.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeC-------Ch
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATT-------DA   75 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~-------~~   75 (300)
                      +++.||||+|.+|.+++..|+..|.       ++++.+.+.+.+.++.....+......   ...++.-..       ..
T Consensus        50 k~vlITGas~gIG~aia~~L~~~G~-------~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~  122 (294)
T PRK07985         50 RKALVTGGDSGIGRAAAIAYAREGA-------DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEA  122 (294)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC-------EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHH
Confidence            5899999999999999999998875       677877643222222221111111000   000110000       11


Q ss_pred             hhhcCCCcEEEEeCCCCCC--C--CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCC
Q 022227           76 VEACTGVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI  148 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~--~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~  148 (300)
                      .+.+...|++|+.||....  +  ..+.   ...+..|+.....+.+.+.++-.++..+|++|+....         .+.
T Consensus       123 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~---------~~~  193 (294)
T PRK07985        123 HKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAY---------QPS  193 (294)
T ss_pred             HHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhc---------cCC
Confidence            1234567999999986421  1  1222   3346778877766666665542223467777754321         122


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHc
Q 022227          149 PAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                      |....|+.++.-...+.+.+++++
T Consensus       194 ~~~~~Y~asKaal~~l~~~la~el  217 (294)
T PRK07985        194 PHLLDYAATKAAILNYSRGLAKQV  217 (294)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHH
Confidence            322235666665556667777765

>PRK05884 short chain dehydrogenase; Provisional

Probab=97.69  E-value=0.00065  Score=59.39  Aligned_cols=144  Identities=13%  Similarity=0.115  Sum_probs=75.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc----CC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC----TG   81 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~----~~   81 (300)
                      ||+.|+||+|.+|++++..|++.|.       ++++++.++  ++++....++. .. ....++.-..+..+.+    +.
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~-~~-~~~~D~~~~~~v~~~~~~~~~~   69 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGH-------KVTLVGARR--DDLEVAAKELD-VD-AIVCDNTDPASLEEARGLFPHH   69 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhcc-Cc-EEecCCCCHHHHHHHHHHHhhc
Confidence            4899999999999999999998764       788888753  34432222111 00 0001111111122222    25


Q ss_pred             CcEEEEeCCCCCC---C---C--CcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCC
Q 022227           82 VNIAVMVGGFPRK---E---G--MER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPA  150 (300)
Q Consensus        82 aDvVi~~ag~~~~---~---g--~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~  150 (300)
                      .|++|+.+|....   +   .  ++.   ...+..|+...-.+.+.+.+.-.+...+|+++...             .|.
T Consensus        70 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~-------------~~~  136 (223)
T PRK05884         70 LDTIVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPEN-------------PPA  136 (223)
T ss_pred             CcEEEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCC-------------CCC
Confidence            7999999874210   0   0  111   23456666554455544433211123567666422             111


Q ss_pred             CcEEeeehhhHHHHHHHHHHHcC
Q 022227          151 KNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       151 ~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ...++.++--...+.+.+++++.
T Consensus       137 ~~~Y~asKaal~~~~~~la~e~~  159 (223)
T PRK05884        137 GSAEAAIKAALSNWTAGQAAVFG  159 (223)
T ss_pred             ccccHHHHHHHHHHHHHHHHHhh
Confidence            22455565555666777777764

>PRK07035 short chain dehydrogenase; Provisional

Probab=97.69  E-value=0.0013  Score=58.07  Aligned_cols=159  Identities=14%  Similarity=0.061  Sum_probs=82.3

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh--
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV--   76 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~--   76 (300)
                      +++.++|.|+||+|++|.+++..|+..|.       .++++|.+.  +.++....++.+....   ...++.-..+..  
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   75 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-------HVIVSSRKL--DGCQAVADAIVAAGGKAEALACHIGEMEQIDAL   75 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence            34557899999999999999999998875       788998753  3343333333221100   000110000111  


Q ss_pred             -----hhcCCCcEEEEeCCCCC--CC--CCcH---HHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEecCchhhHHHHHH
Q 022227           77 -----EACTGVNIAVMVGGFPR--KE--GMER---KDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILK  142 (300)
Q Consensus        77 -----~a~~~aDvVi~~ag~~~--~~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~--~~~~viv~sNP~~~~~~~~~  142 (300)
                           +.+...|++|+.||...  .+  ..+.   ...+..|......+.+.+.++..  +..++++++.....      
T Consensus        76 ~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~------  149 (252)
T PRK07035         76 FAHIRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGV------  149 (252)
T ss_pred             HHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhc------
Confidence                 12345799999988521  11  1222   23456676665555544433211  12356666643211      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                         ...|....++.++.-...+.+.++++++  +..|+
T Consensus       150 ---~~~~~~~~Y~~sK~al~~~~~~l~~e~~--~~gi~  182 (252)
T PRK07035        150 ---SPGDFQGIYSITKAAVISMTKAFAKECA--PFGIR  182 (252)
T ss_pred             ---CCCCCCcchHHHHHHHHHHHHHHHHHHh--hcCEE
Confidence               1112222345555555556666676654  33454

>PRK06196 oxidoreductase; Provisional

Probab=97.69  E-value=0.00041  Score=63.88  Aligned_cols=157  Identities=9%  Similarity=0.027  Sum_probs=81.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCCh-------hh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDA-------VE   77 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~-------~~   77 (300)
                      .++|+||||+|.+|.+++..|+..|.       +|++.++++  ++++....++.... ....++.-..+.       .+
T Consensus        26 ~k~vlITGasggIG~~~a~~L~~~G~-------~Vv~~~R~~--~~~~~~~~~l~~v~-~~~~Dl~d~~~v~~~~~~~~~   95 (315)
T PRK06196         26 GKTAIVTGGYSGLGLETTRALAQAGA-------HVIVPARRP--DVAREALAGIDGVE-VVMLDLADLESVRAFAERFLD   95 (315)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhhhCe-EEEccCCCHHHHHHHHHHHHh
Confidence            46899999999999999999998875       788888763  33332222221110 000011100011       11


Q ss_pred             hcCCCcEEEEeCCCCCCCC----CcHHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH---CC
Q 022227           78 ACTGVNIAVMVGGFPRKEG----MERKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEF---AP  146 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~g----~~r~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~---~~  146 (300)
                      .+...|++|+.||....+.    +.-...+..|...    ++.+.+.+++.+  ..++|++|+............   ..
T Consensus        96 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~--~~~iV~vSS~~~~~~~~~~~~~~~~~  173 (315)
T PRK06196         96 SGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA--GARVVALSSAGHRRSPIRWDDPHFTR  173 (315)
T ss_pred             cCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCeEEEECCHHhccCCCCccccCccC
Confidence            2356899999998643221    1123345566554    555666665543  246777775321100000000   00


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .+++...++.++.-...+...+++++.
T Consensus       174 ~~~~~~~Y~~SK~a~~~~~~~la~~~~  200 (315)
T PRK06196        174 GYDKWLAYGQSKTANALFAVHLDKLGK  200 (315)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence            111112355566666666677777653

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=97.69  E-value=0.00054  Score=60.26  Aligned_cols=117  Identities=17%  Similarity=0.178  Sum_probs=66.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh---
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA---   78 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a---   78 (300)
                      .+++.|+||+|++|+.++..|++.|.       +++++|.+.  +.++....++......   ...++.-..+..++   
T Consensus         3 ~~~ilItGas~~iG~~la~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   73 (250)
T TIGR03206         3 DKTAIVTGGGGGIGGATCRRFAEEGA-------KVAVFDLNR--EAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAA   73 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEecCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence            46899999999999999999998875       788998763  3333222233221100   00011000011122   


Q ss_pred             ----cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEecC
Q 022227           79 ----CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALE----QHAAPNCKVLVVAN  132 (300)
Q Consensus        79 ----~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~----~~~~~~~~viv~sN  132 (300)
                          +...|++|+.+|.....   ..+.   ...+..|+.....+.+.+.    +..  ..+++++++
T Consensus        74 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~ii~iss  139 (250)
T TIGR03206        74 AEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERG--AGRIVNIAS  139 (250)
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CeEEEEECc
Confidence                23589999999864221   1122   2346677777766655554    332  235777765

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.68  E-value=0.0011  Score=57.78  Aligned_cols=119  Identities=18%  Similarity=0.148  Sum_probs=62.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV----   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~----   76 (300)
                      ++++|.|+||+|.+|+.++..|+++|.       ++.++.... .+..+....++......   ...++.-..+..    
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~g~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~   76 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARAGA-------DVVVHYRSD-EEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVA   76 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeCCC-HHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHH
Confidence            456899999999999999999998875       555544432 12222121122111000   000100000111    


Q ss_pred             ---hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecC
Q 022227           77 ---EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVAN  132 (300)
Q Consensus        77 ---~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sN  132 (300)
                         +.+.+.|+||+++|.....   ..+.   .+.+..|+.....+.+.+    ++...  .+++++|.
T Consensus        77 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~~i~~SS  143 (249)
T PRK12825         77 AAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRG--GRIVNISS  143 (249)
T ss_pred             HHHHHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CEEEEECc
Confidence               1234679999999864321   1222   344666777666666665    34332  25666664

>PRK06198 short chain dehydrogenase; Provisional

Probab=97.68  E-value=0.00064  Score=60.30  Aligned_cols=154  Identities=14%  Similarity=0.101  Sum_probs=79.3

Q ss_pred             CCC-CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeE-EEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCCh
Q 022227            1 MAK-EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI-LHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDA   75 (300)
Q Consensus         1 m~~-~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~-l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~   75 (300)
                      |+. +.++|+|+||+|.+|+.++..|+..|.       + |++++.+.  +.+.....++......   ...++.-..+.
T Consensus         1 ~~~~~~k~vlItGa~g~iG~~la~~l~~~G~-------~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~   71 (260)
T PRK06198          1 MGRLDGKVALVTGGTQGLGAAIARAFAERGA-------AGLVICGRNA--EKGEAQAAELEALGAKAVFVQADLSDVEDC   71 (260)
T ss_pred             CCCCCCcEEEEeCCCchHHHHHHHHHHHCCC-------CeEEEEcCCH--HHHHHHHHHHHhcCCeEEEEEccCCCHHHH
Confidence            443 457899999999999999999998774       4 88888753  3333222222111000   00011000011


Q ss_pred             hhh-------cCCCcEEEEeCCCCCCC---CCcHH---HHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHH
Q 022227           76 VEA-------CTGVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNA  138 (300)
Q Consensus        76 ~~a-------~~~aDvVi~~ag~~~~~---g~~r~---dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~  138 (300)
                      .+.       +.+.|++|+++|.....   ..+..   ..+..|+.....+.+.+    .+... ...++++|+....  
T Consensus        72 ~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~g~iv~~ss~~~~--  148 (260)
T PRK06198         72 RRVVAAADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKA-EGTIVNIGSMSAH--  148 (260)
T ss_pred             HHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CCEEEEECCcccc--
Confidence            111       24689999999875422   12222   23566766555555444    33321 2356666643321  


Q ss_pred             HHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       139 ~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                             .+.|....++.++.-...+.+.+++.+.
T Consensus       149 -------~~~~~~~~Y~~sK~a~~~~~~~~a~e~~  176 (260)
T PRK06198        149 -------GGQPFLAAYCASKGALATLTRNAAYALL  176 (260)
T ss_pred             -------cCCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence                   1122122345555544555566666554

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=97.68  E-value=0.00083  Score=59.59  Aligned_cols=157  Identities=14%  Similarity=0.095  Sum_probs=84.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCCh----
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDA----   75 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~----   75 (300)
                      ++.++|.|+||+|.+|++++..|+..|.       ++++.+.+.  +.++....++.+....   ...++.-..+.    
T Consensus         9 l~~k~vlVtG~s~gIG~~la~~l~~~G~-------~vv~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~   79 (255)
T PRK06113          9 LDGKCAIITGAGAGIGKEIAITFATAGA-------SVVVSDINA--DAANHVVDEIQQLGGQAFACRCDITSEQELSALA   79 (255)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence            3457999999999999999999998875       688888753  3333333333221100   00111100111    


Q ss_pred             ---hhhcCCCcEEEEeCCCCCC--CCCcHH---HHHHhhHHHHHHHHHHHhhh---cCCCeEEEEecCchhhHHHHHHHH
Q 022227           76 ---VEACTGVNIAVMVGGFPRK--EGMERK---DVMSKNVSIYKAQASALEQH---AAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        76 ---~~a~~~aDvVi~~ag~~~~--~g~~r~---dl~~~N~~i~~~i~~~i~~~---~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                         .+.+...|++|++||....  ...+..   +.+..|+.....+.+.+..+   .. ...+|++|.....        
T Consensus        80 ~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~--------  150 (255)
T PRK06113         80 DFALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITSMAAE--------  150 (255)
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcC-CcEEEEEeccccc--------
Confidence               1223467999999986431  122222   23667777666666665432   12 2356776653321        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                       .+.+....++.++.-...+.+.+++.+.  +..|+
T Consensus       151 -~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~~i~  183 (255)
T PRK06113        151 -NKNINMTSYASSKAAASHLVRNMAFDLG--EKNIR  183 (255)
T ss_pred             -CCCCCcchhHHHHHHHHHHHHHHHHHhh--hhCeE
Confidence             1122222345555555555666666553  44555

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.67  E-value=0.00041  Score=61.64  Aligned_cols=155  Identities=12%  Similarity=0.118  Sum_probs=82.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEeCChh---
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAV---   76 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~~~~---   76 (300)
                      ++.+++.||||++.||..++..|+..|.       ++++++.++. +.+..   .+.....   ....++.-..+..   
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~-------~vv~~~~~~~-~~~~~---~~~~~~~~~~~~~~Dl~~~~~~~~~~   74 (251)
T PRK12481          6 LNGKVAIITGCNTGLGQGMAIGLAKAGA-------DIVGVGVAEA-PETQA---QVEALGRKFHFITADLIQQKDIDSIV   74 (251)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEecCchH-HHHHH---HHHHcCCeEEEEEeCCCCHHHHHHHH
Confidence            3456899999999999999999998875       6888876431 22211   1111000   0000111111111   


Q ss_pred             ----hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           77 ----EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        77 ----~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                          +.+...|++|+.||.....   ..+.   ...+..|+...    +.+.+.+.+... ..++|++++....      
T Consensus        75 ~~~~~~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~-~g~ii~isS~~~~------  147 (251)
T PRK12481         75 SQAVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGN-GGKIINIASMLSF------  147 (251)
T ss_pred             HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCC-CCEEEEeCChhhc------
Confidence                2234579999999875321   1122   23455665544    444444444332 2467777754321      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                         .+.+..-.|+.++.-...+.+.+|.++.  +..|+
T Consensus       148 ---~~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gir  180 (251)
T PRK12481        148 ---QGGIRVPSYTASKSAVMGLTRALATELS--QYNIN  180 (251)
T ss_pred             ---CCCCCCcchHHHHHHHHHHHHHHHHHHh--hcCeE
Confidence               1122222456666666677777777764  33454

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=97.67  E-value=0.00071  Score=60.84  Aligned_cols=151  Identities=13%  Similarity=0.105  Sum_probs=80.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEeCChh----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAV----   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~~~~----   76 (300)
                      +.+++.|+||+|.+|++++..|+..|.       +++++|.+.  +.++....++.+...   ....++.-..+..    
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~   79 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA-------KVAILDRNQ--EKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQ   79 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence            346899999999999999999998875       788998853  333333223322100   0000110000111    


Q ss_pred             ---hhcCCCcEEEEeCCCCCCC------------------CCcH---HHHHHhhHHHHH----HHHHHHhhhcCCCeEEE
Q 022227           77 ---EACTGVNIAVMVGGFPRKE------------------GMER---KDVMSKNVSIYK----AQASALEQHAAPNCKVL  128 (300)
Q Consensus        77 ---~a~~~aDvVi~~ag~~~~~------------------g~~r---~dl~~~N~~i~~----~i~~~i~~~~~~~~~vi  128 (300)
                         +.+...|++|++||.....                  ..+.   ...+..|+....    .+.+.+.+..  ...+|
T Consensus        80 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~ii  157 (278)
T PRK08277         80 QILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRK--GGNII  157 (278)
T ss_pred             HHHHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CcEEE
Confidence               1234789999999853211                  1111   223455655443    4445554442  24577


Q ss_pred             EecCchhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCC
Q 022227          129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNV  174 (300)
Q Consensus       129 v~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v  174 (300)
                      ++|.-...         ...|....++.++.-...+.+.++.++.-
T Consensus       158 ~isS~~~~---------~~~~~~~~Y~~sK~a~~~l~~~la~e~~~  194 (278)
T PRK08277        158 NISSMNAF---------TPLTKVPAYSAAKAAISNFTQWLAVHFAK  194 (278)
T ss_pred             EEccchhc---------CCCCCCchhHHHHHHHHHHHHHHHHHhCc
Confidence            77643321         12222223555655555666777777653

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.67  E-value=0.0047  Score=55.31  Aligned_cols=155  Identities=14%  Similarity=0.211  Sum_probs=84.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC----CcccEEEeCChhhh-
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----LLKGVVATTDAVEA-   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~----~~~~v~~~~~~~~a-   78 (300)
                      +.+.+.||||+|.||..++..|++.|.       +|++.|+++  +.++....++......    ...++.-..+..+. 
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~   77 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA-------DVILLSRNE--ENLKKAREKIKSESNVDVSYIVADLTKREDLERTV   77 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHH
Confidence            446789999999999999999998875       788888863  3443333333221000    00111111111122 


Q ss_pred             -----cCCCcEEEEeCCCCCCC---CCcHH---HHHHhh----HHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           79 -----CTGVNIAVMVGGFPRKE---GMERK---DVMSKN----VSIYKAQASALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        79 -----~~~aDvVi~~ag~~~~~---g~~r~---dl~~~N----~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                           +...|++|+.+|.....   ..+..   ..+..|    ...++.+.+.+++..  ..++|++|.....       
T Consensus        78 ~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~--~g~Ii~isS~~~~-------  148 (263)
T PRK08339         78 KELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG--FGRIIYSTSVAIK-------  148 (263)
T ss_pred             HHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEEcCcccc-------
Confidence                 23589999999875421   12222   234445    445666677776553  2467777764321       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                        .+.|..-.++.++--...+.+.+|+++.  +.+|+
T Consensus       149 --~~~~~~~~y~asKaal~~l~~~la~el~--~~gIr  181 (263)
T PRK08339        149 --EPIPNIALSNVVRISMAGLVRTLAKELG--PKGIT  181 (263)
T ss_pred             --CCCCcchhhHHHHHHHHHHHHHHHHHhc--ccCeE
Confidence              1122112344445445566777777765  34454

>PRK06197 short chain dehydrogenase; Provisional

Probab=97.65  E-value=0.00032  Score=64.19  Aligned_cols=159  Identities=11%  Similarity=0.036  Sum_probs=83.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc--cC---CcccEEEeCChhh-
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--FP---LLKGVVATTDAVE-   77 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~--~~---~~~~v~~~~~~~~-   77 (300)
                      +.++|.|+||+|+||++++..|++.|.       ++++++++.  ++++....++....  ..   ...++.-..+..+ 
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~-------~vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~   85 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA-------HVVLAVRNL--DKGKAAAARITAATPGADVTLQELDLTSLASVRAA   85 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHH
Confidence            346899999999999999999998874       688888753  33332222232110  00   0001100001111 


Q ss_pred             ------hcCCCcEEEEeCCCCCCCC----CcHHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhH-HHH-H
Q 022227           78 ------ACTGVNIAVMVGGFPRKEG----MERKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTN-ALI-L  141 (300)
Q Consensus        78 ------a~~~aDvVi~~ag~~~~~g----~~r~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~-~~~-~  141 (300)
                            .+...|++|+.||....+.    +.-...+..|...    ++.+.+.+++..  ..++|++|+..... ... .
T Consensus        86 ~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~--~~~iV~vSS~~~~~~~~~~~  163 (306)
T PRK06197         86 ADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP--GSRVVTVSSGGHRIRAAIHF  163 (306)
T ss_pred             HHHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC--CCEEEEECCHHHhccCCCCc
Confidence                  1236899999998642211    1112345566655    666777666553  24677777543211 000 0


Q ss_pred             HHH--CCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          142 KEF--APSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       142 ~~~--~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ...  ...+++...++.+++-...+.+.+++++.
T Consensus       164 ~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~l~  197 (306)
T PRK06197        164 DDLQWERRYNRVAAYGQSKLANLLFTYELQRRLA  197 (306)
T ss_pred             cccCcccCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            000  00111122356667766777778888775

>PRK07063 short chain dehydrogenase; Provisional

Probab=97.65  E-value=0.00067  Score=60.30  Aligned_cols=156  Identities=14%  Similarity=0.114  Sum_probs=84.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-----CcccEEEeCChhhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-----LLKGVVATTDAVEA   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-----~~~~v~~~~~~~~a   78 (300)
                      +.+++.|+||+|.+|.+++..|++.|.       +++++|.++  ++++....++......     ...++.-..+..++
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-------~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~   76 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA-------AVALADLDA--ALAERAAAAIARDVAGARVLAVPADVTDAASVAAA   76 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHH
Confidence            456899999999999999999998875       788998863  4444333333221000     00111101111222


Q ss_pred             -------cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHH
Q 022227           79 -------CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        79 -------~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                             +...|++|+.||.....   ..+.   ...+..|+.....+.+.    +.+..  ...+|++|+....     
T Consensus        77 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~-----  149 (260)
T PRK07063         77 VAAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERG--RGSIVNIASTHAF-----  149 (260)
T ss_pred             HHHHHHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhC--CeEEEEECChhhc-----
Confidence                   24689999999864311   1122   23355666555444444    44332  2467777654321     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEE
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN  181 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~  181 (300)
                          .+.|....++.++.-...+.+.+++++.  +..|+.
T Consensus       150 ----~~~~~~~~Y~~sKaa~~~~~~~la~el~--~~gIrv  183 (260)
T PRK07063        150 ----KIIPGCFPYPVAKHGLLGLTRALGIEYA--ARNVRV  183 (260)
T ss_pred             ----cCCCCchHHHHHHHHHHHHHHHHHHHhC--ccCeEE
Confidence                1122222345555555566777777764  345553

>PRK07454 short chain dehydrogenase; Provisional

Probab=97.65  E-value=0.00062  Score=59.74  Aligned_cols=123  Identities=17%  Similarity=0.170  Sum_probs=66.2

Q ss_pred             CCCC-CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh
Q 022227            1 MAKE-PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV   76 (300)
Q Consensus         1 m~~~-~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~   76 (300)
                      |+.+ ++++.|+||+|.+|..++..|++.|.       .|+++++++  +.++....++......   ...++.-..+..
T Consensus         1 ~~~~~~k~vlItG~sg~iG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~   71 (241)
T PRK07454          1 MSLNSMPRALITGASSGIGKATALAFAKAGW-------DLALVARSQ--DALEALAAELRSTGVKAAAYSIDLSNPEAIA   71 (241)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhCCCcEEEEEccCCCHHHHH
Confidence            6553 45799999999999999999998875       688888763  3332222222111000   001111011111


Q ss_pred             hh-------cCCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHH----HHHhhhcCCCeEEEEecCch
Q 022227           77 EA-------CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQA----SALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        77 ~a-------~~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~----~~i~~~~~~~~~viv~sNP~  134 (300)
                      .+       +...|++|+++|.....   ..+   -...+..|+.....+.    +.+.+..  ...++++|+..
T Consensus        72 ~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~  144 (241)
T PRK07454         72 PGIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARG--GGLIINVSSIA  144 (241)
T ss_pred             HHHHHHHHHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC--CcEEEEEccHH
Confidence            12       24589999999875321   112   1234556666544444    4444432  23567766543

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.64  E-value=0.00037  Score=64.92  Aligned_cols=73  Identities=26%  Similarity=0.347  Sum_probs=51.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~-~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      +.++|+||||+|++|+.++..|... +. .     ++++++++  .+++.....++.+..      +   .+.++++.++
T Consensus       154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv-~-----~lilv~R~--~~rl~~La~el~~~~------i---~~l~~~l~~a  216 (340)
T PRK14982        154 SKATVAVVGATGDIGSAVCRWLDAKTGV-A-----ELLLVARQ--QERLQELQAELGGGK------I---LSLEEALPEA  216 (340)
T ss_pred             CCCEEEEEccChHHHHHHHHHHHhhCCC-C-----EEEEEcCC--HHHHHHHHHHhcccc------H---HhHHHHHccC
Confidence            4579999998899999999999754 32 1     68899875  345544433332111      1   1467889999


Q ss_pred             cEEEEeCCCCC
Q 022227           83 NIAVMVGGFPR   93 (300)
Q Consensus        83 DvVi~~ag~~~   93 (300)
                      |+||++++.+.
T Consensus       217 DiVv~~ts~~~  227 (340)
T PRK14982        217 DIVVWVASMPK  227 (340)
T ss_pred             CEEEECCcCCc
Confidence            99999998765

>PRK08177 short chain dehydrogenase; Provisional

Probab=97.64  E-value=0.00028  Score=61.46  Aligned_cols=151  Identities=11%  Similarity=0.080  Sum_probs=75.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeC---Chhhhc--C
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT---DAVEAC--T   80 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~---~~~~a~--~   80 (300)
                      ++|.|+||+|.+|+.++..|+..|.       +|+++|.++.  .++. ..++.+... ...++.-..   ...+.+  .
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~-------~V~~~~r~~~--~~~~-~~~~~~~~~-~~~D~~d~~~~~~~~~~~~~~   70 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW-------QVTATVRGPQ--QDTA-LQALPGVHI-EKLDMNDPASLDQLLQRLQGQ   70 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC-------EEEEEeCCCc--chHH-HHhccccce-EEcCCCCHHHHHHHHHHhhcC
Confidence            5799999999999999999998775       7889988642  2211 111111000 000100000   111222  2


Q ss_pred             CCcEEEEeCCCCCC---C--CCcHH---HHHHhhHHHHHHHHHHHhhhcCCC-eEEEEecCchhhHHHHHHHHCCCCCCC
Q 022227           81 GVNIAVMVGGFPRK---E--GMERK---DVMSKNVSIYKAQASALEQHAAPN-CKVLVVANPANTNALILKEFAPSIPAK  151 (300)
Q Consensus        81 ~aDvVi~~ag~~~~---~--g~~r~---dl~~~N~~i~~~i~~~i~~~~~~~-~~viv~sNP~~~~~~~~~~~~~~~p~~  151 (300)
                      ..|+||+.||....   +  ..+..   ..+..|......+.+.+.++..++ ..+++.+......     .. +..+..
T Consensus        71 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~~-----~~-~~~~~~  144 (225)
T PRK08177         71 RFDLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGSV-----EL-PDGGEM  144 (225)
T ss_pred             CCCEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCcccc-----cc-CCCCCc
Confidence            58999999987421   1  11222   223445544444544444332112 3344444322110     00 000111


Q ss_pred             cEEeeehhhHHHHHHHHHHHcC
Q 022227          152 NITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       152 ~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ..++.++.....+.+.++++++
T Consensus       145 ~~Y~~sK~a~~~~~~~l~~e~~  166 (225)
T PRK08177        145 PLYKASKAALNSMTRSFVAELG  166 (225)
T ss_pred             cchHHHHHHHHHHHHHHHHHhh
Confidence            1356666667777778887765

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.64  E-value=0.00044  Score=65.23  Aligned_cols=79  Identities=20%  Similarity=0.332  Sum_probs=52.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhccc----CCCCCCeEEEEEecCCchhhhhhhhhhhhh--hc------cCCcccEEE
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVM----LGTDQPVILHMLDIPPAAEALNGVKMELVD--AA------FPLLKGVVA   71 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~----~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~--~~------~~~~~~v~~   71 (300)
                      +++||+|+| +|.-|++++..|...+.    |+  +  ++.|+.+++..+. +....++.+  ..      ..+..++..
T Consensus        10 ~~~ki~ViG-aG~wGtAlA~~l~~n~~~~~~~~--~--~V~lw~~~~~~~~-~~~~~~in~~~~N~~ylp~~~Lp~ni~~   83 (365)
T PTZ00345         10 GPLKVSVIG-SGNWGSAISKVVGENTQRNYIFH--N--EVRMWVLEEIVEG-EKLSDIINTKHENVKYLPGIKLPDNIVA   83 (365)
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHhcCCcccCCC--C--eEEEEEecccccc-hHHHHHHHhcCCCcccCCCCcCCCceEE
Confidence            457999999 79999999999987652    22  1  6777776541100 011222321  11      123468888


Q ss_pred             eCChhhhcCCCcEEEEe
Q 022227           72 TTDAVEACTGVNIAVMV   88 (300)
Q Consensus        72 ~~~~~~a~~~aDvVi~~   88 (300)
                      ++|..+++++||+||++
T Consensus        84 tsdl~eav~~aDiIvlA  100 (365)
T PTZ00345         84 VSDLKEAVEDADLLIFV  100 (365)
T ss_pred             ecCHHHHHhcCCEEEEE
Confidence            89988999999988886

>PRK07578 short chain dehydrogenase; Provisional

Probab=97.62  E-value=0.0008  Score=57.43  Aligned_cols=142  Identities=14%  Similarity=0.118  Sum_probs=77.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |+++|+||+|.+|..++..|.+. .       ++++.+.++  +   ....|+.+....  .      ...+.+...|++
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~-------~vi~~~r~~--~---~~~~D~~~~~~~--~------~~~~~~~~id~l   59 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-H-------EVITAGRSS--G---DVQVDITDPASI--R------ALFEKVGKVDAV   59 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-C-------cEEEEecCC--C---ceEecCCChHHH--H------HHHHhcCCCCEE
Confidence            47999999999999999999875 2       688887753  1   123455443200  0      111223468999


Q ss_pred             EEeCCCCCCC---CCcHH---HHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehh
Q 022227           86 VMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRL  159 (300)
Q Consensus        86 i~~ag~~~~~---g~~r~---dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~l  159 (300)
                      |+.||.....   ..+..   +.+..|+.....+.+.+.++-.+...++++|....        . .+.|..-.++.++-
T Consensus        60 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~--------~-~~~~~~~~Y~~sK~  130 (199)
T PRK07578         60 VSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILS--------D-EPIPGGASAATVNG  130 (199)
T ss_pred             EECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEccccc--------C-CCCCCchHHHHHHH
Confidence            9999874311   12222   23556666666666555443222334666554221        0 12222122444444


Q ss_pred             hHHHHHHHHHHHcCCCCCCeE
Q 022227          160 DHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       160 d~~R~~~~la~~l~v~~~~V~  180 (300)
                      -...+.+.++.++   +..|+
T Consensus       131 a~~~~~~~la~e~---~~gi~  148 (199)
T PRK07578        131 ALEGFVKAAALEL---PRGIR  148 (199)
T ss_pred             HHHHHHHHHHHHc---cCCeE
Confidence            4456666777776   34454

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.61  E-value=0.0005  Score=63.50  Aligned_cols=79  Identities=24%  Similarity=0.187  Sum_probs=47.7

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-CcccEEEeCChhhhc
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEAC   79 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-~~~~v~~~~~~~~a~   79 (300)
                      |.++.|||+|+| +|.||..++..|...|.       ++.+++.++ .+.+......+...... ....+...++. ++.
T Consensus         1 ~~~~~m~I~IiG-~GaiG~~lA~~L~~~g~-------~V~~~~r~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~   70 (313)
T PRK06249          1 MDSETPRIGIIG-TGAIGGFYGAMLARAGF-------DVHFLLRSD-YEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDM   70 (313)
T ss_pred             CCCcCcEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEEeCC-HHHHHhCCeEEEeCCCCeeecCceEEcch-hhc
Confidence            778889999999 79999999999988763       688888753 22221110011100000 01112233333 357


Q ss_pred             CCCcEEEEeC
Q 022227           80 TGVNIAVMVG   89 (300)
Q Consensus        80 ~~aDvVi~~a   89 (300)
                      ..+|+||++-
T Consensus        71 ~~~D~vilav   80 (313)
T PRK06249         71 PPCDWVLVGL   80 (313)
T ss_pred             CCCCEEEEEe
Confidence            7899999984

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=97.61  E-value=0.0014  Score=58.22  Aligned_cols=150  Identities=14%  Similarity=0.103  Sum_probs=78.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEeCChh---
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAV---   76 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~~~~---   76 (300)
                      ++.+.+.|+||+|.||.+++..|++.|.       +++++|.....+..    .++.....   ....++.-..+..   
T Consensus         8 l~~k~~lItG~~~gIG~a~a~~l~~~G~-------~vv~~~~~~~~~~~----~~~~~~~~~~~~~~~Dl~~~~~~~~~~   76 (253)
T PRK08993          8 LEGKVAVVTGCDTGLGQGMALGLAEAGC-------DIVGINIVEPTETI----EQVTALGRRFLSLTADLRKIDGIPALL   76 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEecCcchHHHH----HHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence            3446899999999999999999998875       67888765322111    11111000   0000110000111   


Q ss_pred             ----hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEecCchhhHHHHHH
Q 022227           77 ----EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        77 ----~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~----~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                          +.+...|++|++||.....   ..+.   .+.+..|+.....+.+.+.    +.++ ...++++|+-...      
T Consensus        77 ~~~~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~------  149 (253)
T PRK08993         77 ERAVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGN-GGKIINIASMLSF------  149 (253)
T ss_pred             HHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC-CeEEEEECchhhc------
Confidence                1234689999999875321   1122   3346677665555554443    3322 3467776653321      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                         .+.+..-.++.++.-...+.+.+|+++.
T Consensus       150 ---~~~~~~~~Y~~sKaa~~~~~~~la~e~~  177 (253)
T PRK08993        150 ---QGGIRVPSYTASKSGVMGVTRLMANEWA  177 (253)
T ss_pred             ---cCCCCCcchHHHHHHHHHHHHHHHHHhh
Confidence               1112112456666555566666777654

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.61  E-value=0.00071  Score=61.77  Aligned_cols=104  Identities=18%  Similarity=0.226  Sum_probs=59.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhh---hhhhhccCCcccEEEeCChhhhcCCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM---ELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~---dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      |||+|+| +|.+|..++..|.+.|.       ++.++|.++  +.++....   .+.+..  ....+...++..+ .+++
T Consensus         1 m~I~IiG-~G~~G~~~a~~L~~~g~-------~V~~~~r~~--~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~-~~~~   67 (304)
T PRK06522          1 MKIAILG-AGAIGGLFGAALAQAGH-------DVTLVARRG--AHLDALNENGLRLEDGE--ITVPVLAADDPAE-LGPQ   67 (304)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEECCh--HHHHHHHHcCCcccCCc--eeecccCCCChhH-cCCC
Confidence            4899999 79999999999998763       799999843  23321111   110100  0011122334433 4899


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA  138 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~  138 (300)
                      |+||++--..                .+.++++.+..+-.++..+|...|..+...
T Consensus        68 d~vila~k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~  107 (304)
T PRK06522         68 DLVILAVKAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLE  107 (304)
T ss_pred             CEEEEecccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence            9999984211                122344444443333556888889876443

>PRK08589 short chain dehydrogenase; Validated

Probab=97.61  E-value=0.00069  Score=60.94  Aligned_cols=156  Identities=12%  Similarity=0.085  Sum_probs=83.6

Q ss_pred             CCC-CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEeCChh
Q 022227            1 MAK-EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAV   76 (300)
Q Consensus         1 m~~-~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~~~~   76 (300)
                      |+. +.+++.||||+|.+|..++..|+..|.       ++++++.+   +.++....++.+...   ....++.-..+..
T Consensus         1 m~~l~~k~vlItGas~gIG~aia~~l~~~G~-------~vi~~~r~---~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~   70 (272)
T PRK08589          1 MKRLENKVAVITGASTGIGQASAIALAQEGA-------YVLAVDIA---EAVSETVDKIKSNGGKAKAYHVDISDEQQVK   70 (272)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCc---HHHHHHHHHHHhcCCeEEEEEeecCCHHHHH
Confidence            542 456899999999999999999998875       78888875   233323333322110   0000110000111


Q ss_pred             -------hhcCCCcEEEEeCCCCCCC----CCcH---HHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCchhhHH
Q 022227           77 -------EACTGVNIAVMVGGFPRKE----GMER---KDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNA  138 (300)
Q Consensus        77 -------~a~~~aDvVi~~ag~~~~~----g~~r---~dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP~~~~~  138 (300)
                             +.+...|++|+.||.....    ..+.   ...+..|+...    +.+.+.+.+.   +.++|++++....  
T Consensus        71 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~---~g~iv~isS~~~~--  145 (272)
T PRK08589         71 DFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ---GGSIINTSSFSGQ--  145 (272)
T ss_pred             HHHHHHHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc---CCEEEEeCchhhc--
Confidence                   1234579999999875321    1122   22344555444    4444545433   2467777754321  


Q ss_pred             HHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       139 ~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                             .+.|..-.++.++.-...+.+.+|++++  +..|+
T Consensus       146 -------~~~~~~~~Y~asKaal~~l~~~la~e~~--~~gI~  178 (272)
T PRK08589        146 -------AADLYRSGYNAAKGAVINFTKSIAIEYG--RDGIR  178 (272)
T ss_pred             -------CCCCCCchHHHHHHHHHHHHHHHHHHhh--hcCeE
Confidence                   1122222355555555677777887764  34455

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=97.60  E-value=0.00047  Score=61.75  Aligned_cols=168  Identities=17%  Similarity=0.235  Sum_probs=89.9

Q ss_pred             EEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC-CCcEEE
Q 022227            8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT-GVNIAV   86 (300)
Q Consensus         8 V~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~-~aDvVi   86 (300)
                      |+|+||+|+||+++...|...|.       ++..+-+++  .+.+..   + +..      +..-....+... ++|+||
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh-------~v~iltR~~--~~~~~~---~-~~~------v~~~~~~~~~~~~~~DavI   61 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGH-------QVTILTRRP--PKASQN---L-HPN------VTLWEGLADALTLGIDAVI   61 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCC-------eEEEEEcCC--cchhhh---c-Ccc------ccccchhhhcccCCCCEEE
Confidence            68999999999999999988753       566665543  111111   1 100      001112222233 799999


Q ss_pred             EeCCCCCC---CCCc-HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH----HHHHHHCCCCCCCcEEee-e
Q 022227           87 MVGGFPRK---EGME-RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA----LILKEFAPSIPAKNITCL-T  157 (300)
Q Consensus        87 ~~ag~~~~---~g~~-r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~----~~~~~~~~~~p~~~i~~~-t  157 (300)
                      ..||.|-.   .... ...+...-+...+.+.+.|.+...+ .++++-++-+..-.    ..+.+.  +-+.+.|-+- |
T Consensus        62 NLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~-P~~~isaSAvGyYG~~~~~~~tE~--~~~g~~Fla~lc  138 (297)
T COG1090          62 NLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETK-PKVLISASAVGYYGHSGDRVVTEE--SPPGDDFLAQLC  138 (297)
T ss_pred             ECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCC-CcEEEecceEEEecCCCceeeecC--CCCCCChHHHHH
Confidence            99998742   2222 3455666788889999999865433 23433332222100    000110  1111223221 2


Q ss_pred             hhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC---ceeeeccce
Q 022227          158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS---SQYPDVNHA  199 (300)
Q Consensus       158 ~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~---~~~p~~s~a  199 (300)
                      ..-. .. ..=|+.+|+...-+|.=+|+|.-|.   .|.|+++.-
T Consensus       139 ~~WE-~~-a~~a~~~gtRvvllRtGvVLs~~GGaL~~m~~~fk~g  181 (297)
T COG1090         139 QDWE-EE-ALQAQQLGTRVVLLRTGVVLSPDGGALGKMLPLFKLG  181 (297)
T ss_pred             HHHH-HH-HhhhhhcCceEEEEEEEEEecCCCcchhhhcchhhhc
Confidence            1111 11 1225566777777777778886664   677766553

>PRK06924 short chain dehydrogenase; Provisional

Probab=97.59  E-value=0.00064  Score=59.97  Aligned_cols=34  Identities=15%  Similarity=0.177  Sum_probs=29.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      ++|.|+||+|.+|+.++..|++.|.       +|++++.++
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~-------~V~~~~r~~   35 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGT-------HVISISRTE   35 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCC-------EEEEEeCCc
Confidence            4799999999999999999998875       688888754

>PRK06181 short chain dehydrogenase; Provisional

Probab=97.59  E-value=0.00085  Score=59.68  Aligned_cols=120  Identities=23%  Similarity=0.190  Sum_probs=66.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC---cccEEEeCChhhh----
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAVEA----   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~---~~~v~~~~~~~~a----   78 (300)
                      ++|.|+||+|++|+.++..|+..|.       ++++++.++  +.++....++.......   ..++.-.....++    
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~-------~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~   72 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA-------QLVLAARNE--TRLASLAQELADHGGEALVVPTDVSDAEACERLIEAA   72 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence            5799999999999999999998764       688888753  33332222232211000   0000000011111    


Q ss_pred             ---cCCCcEEEEeCCCCCCCC---C-cH---HHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEecCch
Q 022227           79 ---CTGVNIAVMVGGFPRKEG---M-ER---KDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPA  134 (300)
Q Consensus        79 ---~~~aDvVi~~ag~~~~~g---~-~r---~dl~~~N~~i~~~i~~~i~~~~~-~~~~viv~sNP~  134 (300)
                         +.+.|+||+++|......   . +.   .+.+..|+.....+.+.+.++-. ...++|++|...
T Consensus        73 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~  139 (263)
T PRK06181         73 VARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLA  139 (263)
T ss_pred             HHHcCCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEeccc
Confidence               236899999998643211   1 22   23466777777777666543211 123567766544

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.57  E-value=0.00046  Score=60.56  Aligned_cols=101  Identities=20%  Similarity=0.201  Sum_probs=58.8

Q ss_pred             EEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-cccEEEeCChhhhcCCCcEEE
Q 022227            8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGVNIAV   86 (300)
Q Consensus         8 V~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-~~~v~~~~~~~~a~~~aDvVi   86 (300)
                      |+|+||+|.+|++++..|+..+.       +|+.+=++.+.+.+.    .+.+..... ..++.-...+.++|+|+|.||
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~-------~V~~l~R~~~~~~~~----~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~   69 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF-------SVRALVRDPSSDRAQ----QLQALGAEVVEADYDDPESLVAALKGVDAVF   69 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG-------CEEEEESSSHHHHHH----HHHHTTTEEEES-TT-HHHHHHHHTTCSEEE
T ss_pred             CEEECCccHHHHHHHHHHHhCCC-------CcEEEEeccchhhhh----hhhcccceEeecccCCHHHHHHHHcCCceEE
Confidence            78999999999999999998653       455554443222221    122111000 001111225678899999999


Q ss_pred             EeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           87 MVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        87 ~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      ++-+...   .       .-.+..+++++++++.+   ++.++.|.
T Consensus        70 ~~~~~~~---~-------~~~~~~~~li~Aa~~ag---Vk~~v~ss  102 (233)
T PF05368_consen   70 SVTPPSH---P-------SELEQQKNLIDAAKAAG---VKHFVPSS  102 (233)
T ss_dssp             EESSCSC---C-------CHHHHHHHHHHHHHHHT----SEEEESE
T ss_pred             eecCcch---h-------hhhhhhhhHHHhhhccc---cceEEEEE
Confidence            9865432   1       12355567888888874   45566554

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK07109 short chain dehydrogenase; Provisional

Probab=97.56  E-value=0.0034  Score=58.48  Aligned_cols=158  Identities=17%  Similarity=0.117  Sum_probs=82.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC---cccEEEeCChh-----
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAV-----   76 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~---~~~v~~~~~~~-----   76 (300)
                      .++|+||||+|.+|..++..|+..|.       +|++++.++  ++++....++.......   ..++.-..+..     
T Consensus         8 ~k~vlITGas~gIG~~la~~la~~G~-------~Vvl~~R~~--~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~   78 (334)
T PRK07109          8 RQVVVITGASAGVGRATARAFARRGA-------KVVLLARGE--EGLEALAAEIRAAGGEALAVVADVADAEAVQAAADR   78 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHH
Confidence            46899999999999999999998875       788988753  44443333332211000   00110001111     


Q ss_pred             --hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhh----HHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           77 --EACTGVNIAVMVGGFPRKE---GMER---KDVMSKN----VSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        77 --~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N----~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                        +.+...|++|+.||.....   ..+.   ...+..|    +..++.+.+.+.+..  ...+|++|+-...        
T Consensus        79 ~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~--~g~iV~isS~~~~--------  148 (334)
T PRK07109         79 AEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD--RGAIIQVGSALAY--------  148 (334)
T ss_pred             HHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEeCChhhc--------
Confidence              1234689999999864321   1122   2234444    344555666665543  2356776653321        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEE
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV  182 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~  182 (300)
                       .+.|....|+.++.-...+...++.++......|+..
T Consensus       149 -~~~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~  185 (334)
T PRK07109        149 -RSIPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVT  185 (334)
T ss_pred             -cCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEE
Confidence             1122222234444444455566666654433445533

>PLN00016 RNA-binding protein; Provisional

Probab=97.56  E-value=0.00032  Score=66.37  Aligned_cols=150  Identities=16%  Similarity=0.205  Sum_probs=79.2

Q ss_pred             CCcEEEEE----cCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch-hhhhhh----hhhhhhhccCCcccEEEe-C
Q 022227            4 EPVRVLVT----GAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-EALNGV----KMELVDAAFPLLKGVVAT-T   73 (300)
Q Consensus         4 ~~~kV~Ii----GAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~-~~l~g~----~~dl~~~~~~~~~~v~~~-~   73 (300)
                      .++||+|+    ||+|++|++++..|+..|+       +|+++++.... ..+...    ..++....   ...+... .
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-------~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~---v~~v~~D~~  120 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-------EVTLFTRGKEPSQKMKKEPFSRFSELSSAG---VKTVWGDPA  120 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCC-------EEEEEecCCcchhhhccCchhhhhHhhhcC---ceEEEecHH
Confidence            35789999    9999999999999998875       78888875421 111000    00111100   0011110 0


Q ss_pred             Chhhhc--CCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCC-
Q 022227           74 DAVEAC--TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPA-  150 (300)
Q Consensus        74 ~~~~a~--~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~-  150 (300)
                      +..+.+  .++|+||++++.              +....+.+++++++.+.+  ++|.+|.. .+  |-   .....|. 
T Consensus       121 d~~~~~~~~~~d~Vi~~~~~--------------~~~~~~~ll~aa~~~gvk--r~V~~SS~-~v--yg---~~~~~p~~  178 (378)
T PLN00016        121 DVKSKVAGAGFDVVYDNNGK--------------DLDEVEPVADWAKSPGLK--QFLFCSSA-GV--YK---KSDEPPHV  178 (378)
T ss_pred             HHHhhhccCCccEEEeCCCC--------------CHHHHHHHHHHHHHcCCC--EEEEEccH-hh--cC---CCCCCCCC
Confidence            122333  579999998642              123456777877766432  46666643 21  10   0001110 


Q ss_pred             ----CcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          151 ----KNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       151 ----~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                          ..... +++..++    +.+..+++..-++...++|....
T Consensus       179 E~~~~~p~~-sK~~~E~----~l~~~~l~~~ilRp~~vyG~~~~  217 (378)
T PLN00016        179 EGDAVKPKA-GHLEVEA----YLQKLGVNWTSFRPQYIYGPGNN  217 (378)
T ss_pred             CCCcCCCcc-hHHHHHH----HHHHcCCCeEEEeceeEECCCCC
Confidence                00111 3333332    23456888888888888897543

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.56  E-value=0.00083  Score=60.32  Aligned_cols=34  Identities=24%  Similarity=0.208  Sum_probs=29.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      +++.||||+|.+|..++..|+..|.       +|++.+.+.
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~-------~V~~~~r~~   35 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY-------EVWATARKA   35 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence            5799999999999999999998775       788888753

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.56  E-value=0.00093  Score=58.73  Aligned_cols=39  Identities=23%  Similarity=0.374  Sum_probs=33.0

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      |+.+..++.|+||+|.+|..++..|+..|.       .++++|.++
T Consensus         1 ~~~~~~~~lItG~~g~iG~~~a~~l~~~G~-------~vi~~~r~~   39 (253)
T PRK08217          1 MDLKDKVIVITGGAQGLGRAMAEYLAQKGA-------KLALIDLNQ   39 (253)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence            666678999999999999999999998764       688888763

>PRK07832 short chain dehydrogenase; Provisional

Probab=97.55  E-value=0.0039  Score=55.92  Aligned_cols=148  Identities=14%  Similarity=0.125  Sum_probs=79.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcc--cEEEeC---------C
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLK--GVVATT---------D   74 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~--~v~~~~---------~   74 (300)
                      ++++||||+|.+|..++..|+..|.       .+++++.++  +.++....++.........  ....+.         .
T Consensus         1 k~vlItGas~giG~~la~~la~~G~-------~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   71 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA-------ELFLTDRDA--DGLAQTVADARALGGTVPEHRALDISDYDAVAAFAAD   71 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHH
Confidence            3799999999999999999998774       688888753  3333332233211100000  000100         1


Q ss_pred             hhhhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           75 AVEACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~----~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                      ..+.+...|++|+++|.....   ..+.   ...+..|+.....+.+.+.    +... ...+|++|.....        
T Consensus        72 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~-~g~ii~isS~~~~--------  142 (272)
T PRK07832         72 IHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGR-GGHLVNVSSAAGL--------  142 (272)
T ss_pred             HHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CcEEEEEcccccc--------
Confidence            112245689999999864321   1222   2346677776666666543    2222 2467777654321        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                       .+.|....++.++.-...+.+.++.++
T Consensus       143 -~~~~~~~~Y~~sK~a~~~~~~~l~~e~  169 (272)
T PRK07832        143 -VALPWHAAYSASKFGLRGLSEVLRFDL  169 (272)
T ss_pred             -CCCCCCcchHHHHHHHHHHHHHHHHHh
Confidence             122322235555554445666666554

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.55  E-value=0.00059  Score=60.38  Aligned_cols=147  Identities=14%  Similarity=0.170  Sum_probs=74.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-c--ccEEEeCChhhhcC-C
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-L--KGVVATTDAVEACT-G   81 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-~--~~v~~~~~~~~a~~-~   81 (300)
                      ++|.||||+|.+|+.++..|++.|.       .+++.+.++  +.++....+........ .  .++.-..+...++. +
T Consensus         3 ~~vlVtGasg~iG~~ia~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   73 (257)
T PRK09291          3 KTILITGAGSGFGREVALRLARKGH-------NVIAGVQIA--PQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWD   73 (257)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCC
Confidence            4799999999999999999998874       677777642  22221111111110000 0  01111112233444 7


Q ss_pred             CcEEEEeCCCCCCCC---CcH---HHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCC
Q 022227           82 VNIAVMVGGFPRKEG---MER---KDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAK  151 (300)
Q Consensus        82 aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~  151 (300)
                      .|+||++||......   .+.   ...+..|+...    +.+.+.+.+...  .++|++|.-...         .+.|..
T Consensus        74 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~iv~~SS~~~~---------~~~~~~  142 (257)
T PRK09291         74 VDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGK--GKVVFTSSMAGL---------ITGPFT  142 (257)
T ss_pred             CCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--ceEEEEcChhhc---------cCCCCc
Confidence            999999998753211   111   12344455443    344444444432  356776643211         112222


Q ss_pred             cEEeeehhhHHHHHHHHHHHc
Q 022227          152 NITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       152 ~i~~~t~ld~~R~~~~la~~l  172 (300)
                      ..++.++....++...+++.+
T Consensus       143 ~~Y~~sK~a~~~~~~~l~~~~  163 (257)
T PRK09291        143 GAYCASKHALEAIAEAMHAEL  163 (257)
T ss_pred             chhHHHHHHHHHHHHHHHHHH
Confidence            234445555555555555543

>PRK12367 short chain dehydrogenase; Provisional

Probab=97.54  E-value=0.00068  Score=60.39  Aligned_cols=103  Identities=13%  Similarity=0.051  Sum_probs=59.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .+++.||||+|.+|.+++..|+..|.       ++++++.++. +.++ ...+  ........++.-..+..+.+...|+
T Consensus        14 ~k~~lITGas~gIG~ala~~l~~~G~-------~Vi~~~r~~~-~~~~-~~~~--~~~~~~~~D~~~~~~~~~~~~~iDi   82 (245)
T PRK12367         14 GKRIGITGASGALGKALTKAFRAKGA-------KVIGLTHSKI-NNSE-SNDE--SPNEWIKWECGKEESLDKQLASLDV   82 (245)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-------EEEEEECCch-hhhh-hhcc--CCCeEEEeeCCCHHHHHHhcCCCCE
Confidence            46899999999999999999998875       6888887531 1111 0000  0000000011111123345678999


Q ss_pred             EEEeCCCCCCCCCcH---HHHHHhhHHHHHHHHHHHh
Q 022227           85 AVMVGGFPRKEGMER---KDVMSKNVSIYKAQASALE  118 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r---~dl~~~N~~i~~~i~~~i~  118 (300)
                      +|+.||.......+.   .+.+..|+.....+++.+.
T Consensus        83 lVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~  119 (245)
T PRK12367         83 LILNHGINPGGRQDPENINKALEINALSSWRLLELFE  119 (245)
T ss_pred             EEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence            999998743222222   3456778766555555443

>PRK07577 short chain dehydrogenase; Provisional

Probab=97.54  E-value=0.00049  Score=60.01  Aligned_cols=35  Identities=31%  Similarity=0.216  Sum_probs=30.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      .++|.|+||+|.+|+.++..|++.|.       ++++++++.
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~-------~v~~~~r~~   37 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGH-------QVIGIARSA   37 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC-------EEEEEeCCc
Confidence            46899999999999999999998874       688888754

>PRK07074 short chain dehydrogenase; Provisional

Probab=97.54  E-value=0.0013  Score=58.32  Aligned_cols=149  Identities=19%  Similarity=0.139  Sum_probs=77.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-CCcccEEEeCChhhhc-----
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEAC-----   79 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-~~~~~v~~~~~~~~a~-----   79 (300)
                      +++.|+||+|++|..++..|++.|.       ++++++.+.  +.++....++..... ....++.-..+...++     
T Consensus         3 k~ilItGat~~iG~~la~~L~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   73 (257)
T PRK07074          3 RTALVTGAAGGIGQALARRFLAAGD-------RVLALDIDA--AALAAFADALGDARFVPVACDLTDAASLAAALANAAA   73 (257)
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence            4799999999999999999998764       788888753  333222222211000 0000000001111222     


Q ss_pred             --CCCcEEEEeCCCCCCCC---CcHH---HHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCchhhHHHHHHHHCCCCC
Q 022227           80 --TGVNIAVMVGGFPRKEG---MERK---DVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAPSIP  149 (300)
Q Consensus        80 --~~aDvVi~~ag~~~~~g---~~r~---dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~~~~~~~~~~~~~~~p  149 (300)
                        ...|+||+++|......   .+..   ..+..|......+.+.+....  .+...++++|+....      .. .+  
T Consensus        74 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~------~~-~~--  144 (257)
T PRK07074         74 ERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGM------AA-LG--  144 (257)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhc------CC-CC--
Confidence              35899999998643221   1222   224456665555555553221  112356666652211      00 11  


Q ss_pred             CCcEEeeehhhHHHHHHHHHHHcC
Q 022227          150 AKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       150 ~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                       ...++.++.-..++.+.++++++
T Consensus       145 -~~~y~~sK~a~~~~~~~~a~~~~  167 (257)
T PRK07074        145 -HPAYSAAKAGLIHYTKLLAVEYG  167 (257)
T ss_pred             -CcccHHHHHHHHHHHHHHHHHHh
Confidence             11345566666677777787765

>PRK08703 short chain dehydrogenase; Provisional

Probab=97.53  E-value=0.0056  Score=53.60  Aligned_cols=151  Identities=15%  Similarity=0.096  Sum_probs=80.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC--CcccEEEeC----Chh-
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATT----DAV-   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~--~~~~v~~~~----~~~-   76 (300)
                      +.++|.|+||+|++|.+++..|++.|.       +++++++++  ++++....++......  .........    +.. 
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~   75 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA-------TVILVARHQ--KKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQ   75 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-------EEEEEeCCh--HHHHHHHHHHHHcCCCCcceEEeeecccchHHHHH
Confidence            457899999999999999999998775       788998864  3443332222211100  000111110    111 


Q ss_pred             ------hhc-CCCcEEEEeCCCCC--CC--CCcHH---HHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCchhhHH
Q 022227           77 ------EAC-TGVNIAVMVGGFPR--KE--GMERK---DVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNA  138 (300)
Q Consensus        77 ------~a~-~~aDvVi~~ag~~~--~~--g~~r~---dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP~~~~~  138 (300)
                            +.+ ...|+||++||...  .+  ..+..   ..+..|+...    +.+.+.+.+..  ...++++++....  
T Consensus        76 ~~~~i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~~ss~~~~--  151 (239)
T PRK08703         76 FAATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSP--DASVIFVGESHGE--  151 (239)
T ss_pred             HHHHHHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCC--CCEEEEEeccccc--
Confidence                  112 46799999998642  12  11222   2355666544    44444444432  2356666543211  


Q ss_pred             HHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCC
Q 022227          139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNV  174 (300)
Q Consensus       139 ~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v  174 (300)
                             ...|...-++.++.-...+.+.++.+++-
T Consensus       152 -------~~~~~~~~Y~~sKaa~~~~~~~la~e~~~  180 (239)
T PRK08703        152 -------TPKAYWGGFGASKAALNYLCKVAADEWER  180 (239)
T ss_pred             -------cCCCCccchHHhHHHHHHHHHHHHHHhcc
Confidence                   11121123555666556667777777654

>PRK05650 short chain dehydrogenase; Provisional

Probab=97.53  E-value=0.0018  Score=57.95  Aligned_cols=117  Identities=20%  Similarity=0.165  Sum_probs=63.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh-----
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE-----   77 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~-----   77 (300)
                      ++|.||||+|.+|+.++..|+..|.       ++++.+.+.  ++++....++......   ...++.-..+..+     
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i   71 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW-------RLALADVNE--EGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQAC   71 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence            3799999999999999999998875       688888753  3343332233221100   0001000001111     


Q ss_pred             --hcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCc
Q 022227           78 --ACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        78 --a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                        .+...|++|+.||.....   ..+.   ...+..|+...    +.+.+.+++...  ..++++|+.
T Consensus        72 ~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~iv~vsS~  137 (270)
T PRK05650         72 EEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKS--GRIVNIASM  137 (270)
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCC--CEEEEECCh
Confidence              224689999999874321   1122   22456665444    444455555432  356666653

>PRK09242 tropinone reductase; Provisional

Probab=97.53  E-value=0.00091  Score=59.35  Aligned_cols=149  Identities=15%  Similarity=0.129  Sum_probs=81.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-----CcccEEEeC-----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-----LLKGVVATT-----   73 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-----~~~~v~~~~-----   73 (300)
                      +.+++.|+||+|.+|..++..|++.|.       +|++++.+.  +.++....++......     ...++.-..     
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-------~v~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~   78 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGA-------DVLIVARDA--DALAQARDELAEEFPEREVHGLAADVSDDEDRRAI   78 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHH
Confidence            456899999999999999999998775       788888753  4444333333322100     000110000     


Q ss_pred             --ChhhhcCCCcEEEEeCCCCCC-C--CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHH
Q 022227           74 --DAVEACTGVNIAVMVGGFPRK-E--GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        74 --~~~~a~~~aDvVi~~ag~~~~-~--g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                        ...+.+...|++|+++|.... +  ..+.   ...+..|+.....+.+.+    ++..  ...+|++|.....     
T Consensus        79 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~ii~~sS~~~~-----  151 (257)
T PRK09242         79 LDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHA--SSAIVNIGSVSGL-----  151 (257)
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CceEEEECccccC-----
Confidence              112234568999999986321 1  1122   234566666555554444    3332  2356666653321     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                          .+.+....++.++.-...+...++.++
T Consensus       152 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~  178 (257)
T PRK09242        152 ----THVRSGAPYGMTKAALLQMTRNLAVEW  178 (257)
T ss_pred             ----CCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence                112222245666665666666677665

>PLN02503 fatty acyl-CoA reductase 2

Probab=97.52  E-value=0.00049  Score=68.93  Aligned_cols=112  Identities=21%  Similarity=0.150  Sum_probs=65.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhh-hhhhhhhhhhc--------cC------CcccE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEAL-NGVKMELVDAA--------FP------LLKGV   69 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l-~g~~~dl~~~~--------~~------~~~~v   69 (300)
                      .++|.||||+||+|..++..|+...-   +. .+|+++.+.++.+.+ +....++.+..        .+      ...++
T Consensus       119 ~k~VlVTGaTGFLGk~LlekLLr~~~---~v-~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki  194 (605)
T PLN02503        119 GKNFLITGATGFLAKVLIEKILRTNP---DV-GKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKL  194 (605)
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHhCC---CC-cEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccE
Confidence            47899999999999999999986431   00 156776554321111 11111111100        00      01111


Q ss_pred             EE-eCC------------hhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhc
Q 022227           70 VA-TTD------------AVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA  121 (300)
Q Consensus        70 ~~-~~~------------~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~  121 (300)
                      +. ..|            .....+++|+|||+|+... ...+..+....|+...+++++.+.+..
T Consensus       195 ~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~  258 (605)
T PLN02503        195 VPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCK  258 (605)
T ss_pred             EEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            11 111            1222467999999998654 234456678889999999999988763

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.52  E-value=0.00085  Score=61.85  Aligned_cols=53  Identities=13%  Similarity=0.194  Sum_probs=42.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..|||+|+| +|.+|++++..|...|.       +|.++|+++.                         .+..++++++|
T Consensus         3 ~~m~I~iiG-~G~~G~~lA~~l~~~G~-------~V~~~~r~~~-------------------------~~~~~~~~~ad   49 (308)
T PRK14619          3 QPKTIAILG-AGAWGSTLAGLASANGH-------RVRVWSRRSG-------------------------LSLAAVLADAD   49 (308)
T ss_pred             CCCEEEEEC-ccHHHHHHHHHHHHCCC-------EEEEEeCCCC-------------------------CCHHHHHhcCC
Confidence            457999999 79999999999998774       7899998531                         14557788999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +||++.
T Consensus        50 vvi~~v   55 (308)
T PRK14619         50 VIVSAV   55 (308)
T ss_pred             EEEEEC
Confidence            999874

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=97.51  E-value=0.0017  Score=57.01  Aligned_cols=150  Identities=10%  Similarity=0.068  Sum_probs=73.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC---cccEEEeCChh-----
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAV-----   76 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~---~~~v~~~~~~~-----   76 (300)
                      .+.+.|+||+|++|..++..|++.|.       ++++..... .+..+....++.......   ..++.-..+..     
T Consensus         3 ~k~~lVtG~s~giG~~~a~~l~~~G~-------~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   74 (246)
T PRK12938          3 QRIAYVTGGMGGIGTSICQRLHKDGF-------KVVAGCGPN-SPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDK   74 (246)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCC-------EEEEEcCCC-hHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence            35789999999999999999998874       566643211 111111111221111000   00110000111     


Q ss_pred             --hhcCCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHH----HHHHHhhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           77 --EACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKA----QASALEQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        77 --~a~~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~----i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                        +.+...|+||++||.....   ..+   -...+..|......    +.+.+.+..  ..+++++|.....        
T Consensus        75 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~--------  144 (246)
T PRK12938         75 VKAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERG--WGRIINISSVNGQ--------  144 (246)
T ss_pred             HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CeEEEEEechhcc--------
Confidence              2234689999999875421   111   23446667665444    444444332  2357777653211        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                       .+.+....++.++.....+...++++++
T Consensus       145 -~~~~~~~~y~~sK~a~~~~~~~l~~~~~  172 (246)
T PRK12938        145 -KGQFGQTNYSTAKAGIHGFTMSLAQEVA  172 (246)
T ss_pred             -CCCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence             1112122344444444455666666654

>PRK09186 flagellin modification protein A; Provisional

Probab=97.50  E-value=0.0012  Score=58.42  Aligned_cols=163  Identities=17%  Similarity=0.135  Sum_probs=81.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh-ccC---C-cccEEEeCChhhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFP---L-LKGVVATTDAVEA   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~-~~~---~-~~~v~~~~~~~~a   78 (300)
                      +.++|.|+||+|.+|.+++..|+..|.       ++++.+.++  ++++....++... ...   . ..++.-.++..++
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~-------~v~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~   73 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG-------IVIAADIDK--EALNELLESLGKEFKSKKLSLVELDITDQESLEEF   73 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEecCh--HHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHH
Confidence            457899999999999999999998875       688888753  3333332233111 000   0 0111111112222


Q ss_pred             cC-------CCcEEEEeCCCCCC----C--CCcH---HHHHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHH
Q 022227           79 CT-------GVNIAVMVGGFPRK----E--GMER---KDVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNA  138 (300)
Q Consensus        79 ~~-------~aDvVi~~ag~~~~----~--g~~r---~dl~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~  138 (300)
                      ++       ..|+||++|+....    +  ..+.   ...+..|+    ...+.+.+.+++...  .++|++|.-.....
T Consensus        74 ~~~~~~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~iv~~sS~~~~~~  151 (256)
T PRK09186         74 LSKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGG--GNLVNISSIYGVVA  151 (256)
T ss_pred             HHHHHHHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCC--ceEEEEechhhhcc
Confidence            32       37999999875321    1  1221   22344454    444555566554432  36666664221110


Q ss_pred             HHHHHHCCCCCCC--cEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          139 LILKEFAPSIPAK--NITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       139 ~~~~~~~~~~p~~--~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      .-..-. .+.+..  ..++.++.-...+.+.+++.+.  +..++
T Consensus       152 ~~~~~~-~~~~~~~~~~Y~~sK~a~~~l~~~la~e~~--~~~i~  192 (256)
T PRK09186        152 PKFEIY-EGTSMTSPVEYAAIKAGIIHLTKYLAKYFK--DSNIR  192 (256)
T ss_pred             ccchhc-cccccCCcchhHHHHHHHHHHHHHHHHHhC--cCCeE
Confidence            000000 111111  1356566656666667777653  34454

>PLN02780 ketoreductase/ oxidoreductase

Probab=97.50  E-value=0.0018  Score=59.94  Aligned_cols=151  Identities=18%  Similarity=0.165  Sum_probs=84.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-Ccc--cEEEeCC-------
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLK--GVVATTD-------   74 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-~~~--~v~~~~~-------   74 (300)
                      ...+.||||+|.||.+++..|+..|.       +|+++++++  ++++....++...... ...  ....+.+       
T Consensus        53 g~~~lITGAs~GIG~alA~~La~~G~-------~Vil~~R~~--~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~  123 (320)
T PLN02780         53 GSWALVTGPTDGIGKGFAFQLARKGL-------NLVLVARNP--DKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKR  123 (320)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-------CEEEEECCH--HHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHH
Confidence            35799999999999999999998875       689999863  5665554455331100 000  0111111       


Q ss_pred             hhhhcC--CCcEEEEeCCCCCC---C--CCcH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHH
Q 022227           75 AVEACT--GVNIAVMVGGFPRK---E--GMER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        75 ~~~a~~--~aDvVi~~ag~~~~---~--g~~r---~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                      ..+.+.  |.|++|+.||....   +  ..+.   .+.+..|+.....+.+.    +.+..  ...+|++|+-...    
T Consensus       124 l~~~~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~--~g~IV~iSS~a~~----  197 (320)
T PLN02780        124 IKETIEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRK--KGAIINIGSGAAI----  197 (320)
T ss_pred             HHHHhcCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC--CcEEEEEechhhc----
Confidence            122233  45699999987421   1  1222   23566776655555544    44433  2357777653321    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                         ..+..|....++.++.-...+...++.++.
T Consensus       198 ---~~~~~p~~~~Y~aSKaal~~~~~~L~~El~  227 (320)
T PLN02780        198 ---VIPSDPLYAVYAATKAYIDQFSRCLYVEYK  227 (320)
T ss_pred             ---cCCCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence               001223223466666666677777777764

>PRK07023 short chain dehydrogenase; Provisional

Probab=97.50  E-value=0.00044  Score=60.87  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=29.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      +++.|+||+|++|..++..|++.|.       ++++++.+.
T Consensus         2 ~~vlItGasggiG~~ia~~l~~~G~-------~v~~~~r~~   35 (243)
T PRK07023          2 VRAIVTGHSRGLGAALAEQLLQPGI-------AVLGVARSR   35 (243)
T ss_pred             ceEEEecCCcchHHHHHHHHHhCCC-------EEEEEecCc
Confidence            5899999999999999999998774       688888754

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=97.49  E-value=0.00085  Score=58.44  Aligned_cols=149  Identities=15%  Similarity=0.135  Sum_probs=80.1

Q ss_pred             EEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhhc-----
Q 022227            8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC-----   79 (300)
Q Consensus         8 V~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a~-----   79 (300)
                      |.|+|++|++|+.++..|+++|.       ++++++.+. .+.++....++.+....   ...++.-..+..+.+     
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~-------~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   72 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGA-------KVIITYRSS-EEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEE   72 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCc-hhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence            47999999999999999998875       788887753 12333232333221100   001111111112222     


Q ss_pred             --CCCcEEEEeCCCCCCC---C---CcHHHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEecCchhhHHHHHHHHCCCCC
Q 022227           80 --TGVNIAVMVGGFPRKE---G---MERKDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILKEFAPSIP  149 (300)
Q Consensus        80 --~~aDvVi~~ag~~~~~---g---~~r~dl~~~N~~i~~~i~~~i~~~~~--~~~~viv~sNP~~~~~~~~~~~~~~~p  149 (300)
                        ...|+||+.+|.....   .   .+..+.+..|+.....+.+.+.++..  +..+++++|.....         .+.|
T Consensus        73 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~---------~g~~  143 (239)
T TIGR01830        73 ELGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGL---------MGNA  143 (239)
T ss_pred             HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCcccc---------CCCC
Confidence              3469999999864311   1   12244567788877777777665421  12356776654321         1223


Q ss_pred             CCcEEeeehhhHHHHHHHHHHHcC
Q 022227          150 AKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       150 ~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ...-++.++.-...+.+.+++++.
T Consensus       144 ~~~~y~~~k~a~~~~~~~l~~~~~  167 (239)
T TIGR01830       144 GQANYAASKAGVIGFTKSLAKELA  167 (239)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHh
Confidence            222345555444455555666553

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=97.49  E-value=0.0012  Score=58.83  Aligned_cols=155  Identities=14%  Similarity=0.121  Sum_probs=80.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc--CCcccEEEeCChh-------
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--PLLKGVVATTDAV-------   76 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~--~~~~~v~~~~~~~-------   76 (300)
                      |++.||||+|.+|..++..|++.|.       ++++.++++  ++++....++.+...  ....++.-..+..       
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~   71 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA-------RVVISSRNE--ENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW   71 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH
Confidence            4899999999999999999998875       788888763  344333333322110  0001111001111       


Q ss_pred             hhcCCCcEEEEeCCCCCC-----CCCcHHHH---HHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           77 EACTGVNIAVMVGGFPRK-----EGMERKDV---MSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~-----~g~~r~dl---~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                      +.+...|++|+.||....     ...+..++   +..|.    -..+.+.+.+.+... ...+|++|+....        
T Consensus        72 ~~~g~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-~g~iv~isS~~~~--------  142 (259)
T PRK08340         72 ELLGGIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKM-KGVLVYLSSVSVK--------  142 (259)
T ss_pred             HhcCCCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCC-CCEEEEEeCcccC--------
Confidence            123468999999986421     11222222   23343    223444555443222 2457777654320        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEE
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN  181 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~  181 (300)
                       ...|....++.++--...+.+.+|+.++  +..|+.
T Consensus       143 -~~~~~~~~y~~sKaa~~~~~~~la~e~~--~~gI~v  176 (259)
T PRK08340        143 -EPMPPLVLADVTRAGLVQLAKGVSRTYG--GKGIRA  176 (259)
T ss_pred             -CCCCCchHHHHHHHHHHHHHHHHHHHhC--CCCEEE
Confidence             1123222344455555566777887765  445553

>PRK06123 short chain dehydrogenase; Provisional

Probab=97.49  E-value=0.0018  Score=56.86  Aligned_cols=150  Identities=13%  Similarity=0.093  Sum_probs=78.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh----
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA----   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a----   78 (300)
                      ..++|+||+|++|++++..|+..|.       .+++.+... .++++....++......   ...++.-..+..++    
T Consensus         3 ~~~lVtG~~~~iG~~~a~~l~~~G~-------~vv~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~   74 (248)
T PRK06123          3 KVMIITGASRGIGAATALLAAERGY-------AVCLNYLRN-RDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAV   74 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC-------eEEEecCCC-HHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHH
Confidence            4689999999999999999998764       566766432 23332222222211100   00111111112222    


Q ss_pred             ---cCCCcEEEEeCCCCCCC----CCcH---HHHHHhhHHHHHHHHHHHhhhc-----CCCeEEEEecCchhhHHHHHHH
Q 022227           79 ---CTGVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASALEQHA-----APNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        79 ---~~~aDvVi~~ag~~~~~----g~~r---~dl~~~N~~i~~~i~~~i~~~~-----~~~~~viv~sNP~~~~~~~~~~  143 (300)
                         +...|+||++||.....    ..+.   ...+..|+.....+.+.+.+.-     .+...++++|+....       
T Consensus        75 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~-------  147 (248)
T PRK06123         75 DRELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAAR-------  147 (248)
T ss_pred             HHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhc-------
Confidence               23679999999875321    1122   2346677776655554444321     112357777764421       


Q ss_pred             HCCCCCCC-cEEeeehhhHHHHHHHHHHHc
Q 022227          144 FAPSIPAK-NITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       144 ~~~~~p~~-~i~~~t~ld~~R~~~~la~~l  172 (300)
                        .+.|.. .-++.++.....+...+++++
T Consensus       148 --~~~~~~~~~Y~~sKaa~~~~~~~la~~~  175 (248)
T PRK06123        148 --LGSPGEYIDYAASKGAIDTMTIGLAKEV  175 (248)
T ss_pred             --CCCCCCccchHHHHHHHHHHHHHHHHHh
Confidence              112211 125666666667777777776

>PRK07775 short chain dehydrogenase; Provisional

Probab=97.49  E-value=0.0013  Score=59.11  Aligned_cols=148  Identities=13%  Similarity=0.067  Sum_probs=77.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh-----
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV-----   76 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~-----   76 (300)
                      .+.++|+||+|++|.+++..|+..|.       ++++.+.+.  +.+.....++......   ...+++-..+..     
T Consensus        10 ~~~vlVtGa~g~iG~~la~~L~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~   80 (274)
T PRK07775         10 RRPALVAGASSGIGAATAIELAAAGF-------PVALGARRV--EKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQ   80 (274)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence            35799999999999999999998875       677777642  3332221111110000   000111001111     


Q ss_pred             --hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           77 --EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        77 --~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~----~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                        +.+...|++|++||.....   ..+.   .+.+..|+.....+.+.+.    +..  ..+++++|+...        +
T Consensus        81 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~--~g~iv~isS~~~--------~  150 (274)
T PRK07775         81 AEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERR--RGDLIFVGSDVA--------L  150 (274)
T ss_pred             HHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CceEEEECChHh--------c
Confidence              1234689999999875321   1111   2345667766666655543    322  235666665321        1


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                       .+.|....++.++.-...+...+++.+
T Consensus       151 -~~~~~~~~Y~~sK~a~~~l~~~~~~~~  177 (274)
T PRK07775        151 -RQRPHMGAYGAAKAGLEAMVTNLQMEL  177 (274)
T ss_pred             -CCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence             122322235556665666666777665

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.48  E-value=0.00039  Score=55.03  Aligned_cols=73  Identities=16%  Similarity=0.223  Sum_probs=42.7

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeE-EEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVI-LHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~-l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      ||+|+||+|++|..++..|.....      .+ +.+++...+    .|....-..........+.+.....+.++++|+|
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~------~e~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv   70 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPD------FELVALVSSSRS----AGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVV   70 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTST------EEEEEEEESTTT----TTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEE
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCC------ccEEEeeeeccc----cCCeeehhccccccccceeEeecchhHhhcCCEE
Confidence            799999999999999999887533      24 455555421    1121111111111122333443445678999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |.+.
T Consensus        71 f~a~   74 (121)
T PF01118_consen   71 FLAL   74 (121)
T ss_dssp             EE-S
T ss_pred             EecC
Confidence            9984

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.47  E-value=0.0019  Score=62.49  Aligned_cols=120  Identities=28%  Similarity=0.336  Sum_probs=68.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCCh-------hh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDA-------VE   77 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~-------~~   77 (300)
                      .+++.|+||+|.+|..++..|+..|.       +++++|.....+.+.....++....  ...++.-..+.       .+
T Consensus       210 g~~vlItGasggIG~~la~~l~~~Ga-------~vi~~~~~~~~~~l~~~~~~~~~~~--~~~Dv~~~~~~~~~~~~~~~  280 (450)
T PRK08261        210 GKVALVTGAARGIGAAIAEVLARDGA-------HVVCLDVPAAGEALAAVANRVGGTA--LALDITAPDAPARIAEHLAE  280 (450)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC-------EEEEEeCCccHHHHHHHHHHcCCeE--EEEeCCCHHHHHHHHHHHHH
Confidence            46899999999999999999998774       7888887543333322211111000  00000000011       11


Q ss_pred             hcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhh--cCCCeEEEEecCc
Q 022227           78 ACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQH--AAPNCKVLVVANP  133 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~--~~~~~~viv~sNP  133 (300)
                      .+...|+||++||.....   ..+.   ...+..|+.....+.+.+...  -.++.++|++|+.
T Consensus       281 ~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~  344 (450)
T PRK08261        281 RHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSI  344 (450)
T ss_pred             hCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECCh
Confidence            123589999999975422   1222   345677888888888777652  1123467777753

>PRK06484 short chain dehydrogenase; Validated

Probab=97.46  E-value=0.00097  Score=65.60  Aligned_cols=151  Identities=18%  Similarity=0.177  Sum_probs=85.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCCh-------hh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDA-------VE   77 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~-------~~   77 (300)
                      .+++.||||+|.||..++..|+..|.       .|++.|+++  ++++....++.........++.-..+.       .+
T Consensus       269 ~k~~lItGas~gIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~  339 (520)
T PRK06484        269 PRVVAITGGARGIGRAVADRFAAAGD-------RLLIIDRDA--EGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQA  339 (520)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHH
Confidence            46899999999999999999998875       788898853  333322211110000000011000011       12


Q ss_pred             hcCCCcEEEEeCCCCC--CC--CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCC
Q 022227           78 ACTGVNIAVMVGGFPR--KE--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPA  150 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~--~~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~  150 (300)
                      .+...|++|+.||...  .+  ..+.   ...+..|+.....+.+.+..+-.+...+|++|+....         .+.|.
T Consensus       340 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~---------~~~~~  410 (520)
T PRK06484        340 RWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASL---------LALPP  410 (520)
T ss_pred             HcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhc---------CCCCC
Confidence            2345799999999752  11  1222   3456778777666666554432223467777764431         12232


Q ss_pred             CcEEeeehhhHHHHHHHHHHHcC
Q 022227          151 KNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       151 ~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .-.|+.++.-...+.+.+++++.
T Consensus       411 ~~~Y~asKaal~~l~~~la~e~~  433 (520)
T PRK06484        411 RNAYCASKAAVTMLSRSLACEWA  433 (520)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhh
Confidence            33466666666677777887764

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=97.45  E-value=0.0017  Score=56.80  Aligned_cols=154  Identities=14%  Similarity=0.173  Sum_probs=78.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchh----hhhhhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE----ALNGVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~----~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      |+|+|+||+|.||+.++..|++++. +    ..+.+.+.+...+    ++.....|+.+...     +   ....+.+..
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~-~----~~v~~~~~~~~~~~~~~~~~~~~~Dls~~~~-----~---~~~~~~~~~   67 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYP-D----ATVHATYRHHKPDFQHDNVQWHALDVTDEAE-----I---KQLSEQFTQ   67 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCC-C----CEEEEEccCCccccccCceEEEEecCCCHHH-----H---HHHHHhcCC
Confidence            4899999999999999999988642 1    1455555532111    01112223332210     0   012344678


Q ss_pred             CcEEEEeCCCCCCC---------CCcHH---HHHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHC
Q 022227           82 VNIAVMVGGFPRKE---------GMERK---DVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        82 aDvVi~~ag~~~~~---------g~~r~---dl~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                      .|++|++||.....         ..+..   ..+..|+    .+.+.+.+.+++..  ..+++++|......    ..  
T Consensus        68 id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~--~~~i~~iss~~~~~----~~--  139 (235)
T PRK09009         68 LDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSE--SAKFAVISAKVGSI----SD--  139 (235)
T ss_pred             CCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccC--CceEEEEeeccccc----cc--
Confidence            99999999975321         11222   2234444    34445555454332  23566665322111    00  


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      ...|....++.++.-...+.+.++.++.-...+++
T Consensus       140 ~~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~  174 (235)
T PRK09009        140 NRLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGV  174 (235)
T ss_pred             CCCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeE
Confidence            11222224555666556677777777654333454

>PRK06139 short chain dehydrogenase; Provisional

Probab=97.45  E-value=0.0022  Score=59.67  Aligned_cols=151  Identities=15%  Similarity=0.114  Sum_probs=81.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC---cccEEEeCChhhh-
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAVEA-   78 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~---~~~v~~~~~~~~a-   78 (300)
                      .+.++|+||||+|.||..++..|++.|.       +|++++.++  ++++....++.......   ..++.-..+..+. 
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~-------~Vvl~~R~~--~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~   75 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGA-------RLVLAARDE--EALQAVAEECRALGAEVLVVPTDVTDADQVKALA   75 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHH
Confidence            3457899999999999999999998875       789998863  45543333333211000   0011100111111 


Q ss_pred             ------cCCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHH----HHHHHhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           79 ------CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKA----QASALEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        79 ------~~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~----i~~~i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                            +...|++|+.||.....   ..+   -.+.+..|.-....    ..+.+.+..  ...+|++++....      
T Consensus        76 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~--~g~iV~isS~~~~------  147 (330)
T PRK06139         76 TQAASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG--HGIFINMISLGGF------  147 (330)
T ss_pred             HHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC--CCEEEEEcChhhc------
Confidence                  24679999999875321   111   12345666554444    444444443  2356666643211      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                         .+.|..-.|+.++.-...+...++.++.
T Consensus       148 ---~~~p~~~~Y~asKaal~~~~~sL~~El~  175 (330)
T PRK06139        148 ---AAQPYAAAYSASKFGLRGFSEALRGELA  175 (330)
T ss_pred             ---CCCCCchhHHHHHHHHHHHHHHHHHHhC
Confidence               1223222455555555556666666664

>PRK05867 short chain dehydrogenase; Provisional

Probab=97.45  E-value=0.0007  Score=59.98  Aligned_cols=158  Identities=16%  Similarity=0.180  Sum_probs=83.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEeCCh----
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDA----   75 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~~~----   75 (300)
                      .+.+++.||||+|.+|..++..|+..|.       +|++.+.+.  ++++....++.....   ....++.-..+.    
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~   77 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGA-------QVAIAARHL--DALEKLADEIGTSGGKVVPVCCDVSQHQQVTSML   77 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHH
Confidence            4457899999999999999999998875       788888753  444433333322110   000011100111    


Q ss_pred             ---hhhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHH
Q 022227           76 ---VEACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        76 ---~~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                         .+.+...|++|+.||.....   ..+.   .+.+..|+.....+.+.+    .+... ...++++++-..       
T Consensus        78 ~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~-------  149 (253)
T PRK05867         78 DQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQ-GGVIINTASMSG-------  149 (253)
T ss_pred             HHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCC-CcEEEEECcHHh-------
Confidence               12234789999999875321   1122   234556665555554444    33322 234555553221       


Q ss_pred             HHCCCCCCC-cEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          143 EFAPSIPAK-NITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       143 ~~~~~~p~~-~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      .. ...|.. ..|+.++.-...+.+.+++++.  +..|+
T Consensus       150 ~~-~~~~~~~~~Y~asKaal~~~~~~la~e~~--~~gI~  185 (253)
T PRK05867        150 HI-INVPQQVSHYCASKAAVIHLTKAMAVELA--PHKIR  185 (253)
T ss_pred             cC-CCCCCCccchHHHHHHHHHHHHHHHHHHh--HhCeE
Confidence            00 111222 2355566666677777777764  33454

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.44  E-value=0.002  Score=58.49  Aligned_cols=72  Identities=19%  Similarity=0.187  Sum_probs=47.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +.|||++|| +|.+|.+++..|+..+...   +.++.++|+.. +++++.    +....     .+....+..+++++||
T Consensus         2 ~~mkI~~IG-~G~mG~aia~~l~~~g~~~---~~~v~v~~r~~-~~~~~~----l~~~~-----g~~~~~~~~e~~~~aD   67 (279)
T PRK07679          2 SIQNISFLG-AGSIAEAIIGGLLHANVVK---GEQITVSNRSN-ETRLQE----LHQKY-----GVKGTHNKKELLTDAN   67 (279)
T ss_pred             CCCEEEEEC-ccHHHHHHHHHHHHCCCCC---cceEEEECCCC-HHHHHH----HHHhc-----CceEeCCHHHHHhcCC
Confidence            346999999 8999999999999876321   22688888742 223332    21110     1234456667789999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +||++.
T Consensus        68 vVilav   73 (279)
T PRK07679         68 ILFLAM   73 (279)
T ss_pred             EEEEEe
Confidence            999984

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=97.44  E-value=0.0021  Score=62.00  Aligned_cols=76  Identities=14%  Similarity=0.180  Sum_probs=52.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC----------CcccEEEe
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----------LLKGVVAT   72 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~----------~~~~v~~~   72 (300)
                      .++|||+||| .|+||..++..|.. ++       +++.+|+++  ++.+.    +.....+          ....+..+
T Consensus         4 ~~~mkI~vIG-lGyvGlpmA~~la~-~~-------~V~g~D~~~--~~ve~----l~~G~~~~~e~~~~~l~~~g~l~~t   68 (425)
T PRK15182          4 IDEVKIAIIG-LGYVGLPLAVEFGK-SR-------QVVGFDVNK--KRILE----LKNGVDVNLETTEEELREARYLKFT   68 (425)
T ss_pred             CCCCeEEEEC-cCcchHHHHHHHhc-CC-------EEEEEeCCH--HHHHH----HHCcCCCCCCCCHHHHHhhCCeeEE
Confidence            3678999999 99999999998776 32       799999974  44332    2222111          01234556


Q ss_pred             CChhhhcCCCcEEEEeCCCCCC
Q 022227           73 TDAVEACTGVNIAVMVGGFPRK   94 (300)
Q Consensus        73 ~~~~~a~~~aDvVi~~ag~~~~   94 (300)
                      ++. +++++||++|++.+.|.+
T Consensus        69 ~~~-~~~~~advvii~Vptp~~   89 (425)
T PRK15182         69 SEI-EKIKECNFYIITVPTPIN   89 (425)
T ss_pred             eCH-HHHcCCCEEEEEcCCCCC
Confidence            554 579999999999887753

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=97.44  E-value=0.0013  Score=67.19  Aligned_cols=150  Identities=15%  Similarity=0.118  Sum_probs=80.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-----CCcccEEEeCChhhhc
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-----PLLKGVVATTDAVEAC   79 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-----~~~~~v~~~~~~~~a~   79 (300)
                      .++|.||||+|+||++++..|++.|.       +|+++|++.  +.++....++.....     ....+++-..+..+++
T Consensus       414 gkvvLVTGasggIG~aiA~~La~~Ga-------~Vvi~~r~~--~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~  484 (676)
T TIGR02632       414 RRVAFVTGGAGGIGRETARRLAAEGA-------HVVLADLNL--EAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAF  484 (676)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCC-------EEEEEeCCH--HHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHH
Confidence            36899999999999999999998875       789999863  334332222321100     0001111111122222


Q ss_pred             -------CCCcEEEEeCCCCCCC---CCcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           80 -------TGVNIAVMVGGFPRKE---GMERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        80 -------~~aDvVi~~ag~~~~~---g~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                             .+.|++|+.||.....   ..+..   ..+..|+.    ..+...+.+++.+. ...+|++|+....      
T Consensus       485 ~~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~-~g~IV~iSS~~a~------  557 (676)
T TIGR02632       485 ADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGL-GGNIVFIASKNAV------  557 (676)
T ss_pred             HHHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeChhhc------
Confidence                   3689999999975321   11222   22334443    33455555555432 2356666543211      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                         .+.|....++.++.....+.+.++.+++
T Consensus       558 ---~~~~~~~aY~aSKaA~~~l~r~lA~el~  585 (676)
T TIGR02632       558 ---YAGKNASAYSAAKAAEAHLARCLAAEGG  585 (676)
T ss_pred             ---CCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence               1122222456666666677777787765

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.43  E-value=0.0023  Score=61.94  Aligned_cols=66  Identities=18%  Similarity=0.320  Sum_probs=46.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+|+||+|.+|.+++..|...|.       ++.++|.++  +.+...+.++         .+...++..++++++|+|
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~-------~V~v~~r~~--~~~~~~a~~~---------gv~~~~~~~e~~~~aDvV   62 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF-------EVIVTGRDP--KKGKEVAKEL---------GVEYANDNIDAAKDADIV   62 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC-------EEEEEECCh--HHHHHHHHHc---------CCeeccCHHHHhccCCEE
Confidence            4899998789999999999988764       688999763  3222111111         122345677889999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++.
T Consensus        63 Ilav   66 (437)
T PRK08655         63 IISV   66 (437)
T ss_pred             EEec
Confidence            9984

>PRK06949 short chain dehydrogenase; Provisional

Probab=97.42  E-value=0.0039  Score=55.08  Aligned_cols=36  Identities=22%  Similarity=0.241  Sum_probs=30.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      +.++|.|+||+|+||++++..|+..|.       ++++++.++
T Consensus         8 ~~k~ilItGasg~IG~~~a~~l~~~G~-------~Vi~~~r~~   43 (258)
T PRK06949          8 EGKVALVTGASSGLGARFAQVLAQAGA-------KVVLASRRV   43 (258)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence            357999999999999999999998764       688888753

>PRK06114 short chain dehydrogenase; Provisional

Probab=97.42  E-value=0.00075  Score=59.90  Aligned_cols=159  Identities=14%  Similarity=0.152  Sum_probs=80.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh--
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE--   77 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~--   77 (300)
                      ++.+++.|+||+|.+|++++..|++.|.       ++++.|.+.. +.++....++.+....   ...++.-..+..+  
T Consensus         6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~-------~v~~~~r~~~-~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~   77 (254)
T PRK06114          6 LDGQVAFVTGAGSGIGQRIAIGLAQAGA-------DVALFDLRTD-DGLAETAEHIEAAGRRAIQIAADVTSKADLRAAV   77 (254)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCcc-hHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence            4557899999999999999999998875       7888887532 2222222223221100   0001100011111  


Q ss_pred             -----hcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           78 -----ACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        78 -----a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i----~~~i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                           .+...|++|++||......   .+.   ...+..|+.....+    .+.+.+..  ...+|++|.......    
T Consensus        78 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~~----  151 (254)
T PRK06114         78 ARTEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENG--GGSIVNIASMSGIIV----  151 (254)
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC--CcEEEEECchhhcCC----
Confidence                 2334699999999753211   122   23455676555444    44444332  235666665332100    


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                        .++. ...-++.++.-...+.+.+|+++.  +..|+
T Consensus       152 --~~~~-~~~~Y~~sKaa~~~l~~~la~e~~--~~gi~  184 (254)
T PRK06114        152 --NRGL-LQAHYNASKAGVIHLSKSLAMEWV--GRGIR  184 (254)
T ss_pred             --CCCC-CcchHHHHHHHHHHHHHHHHHHHh--hcCeE
Confidence              0110 011244444444456666776654  33454

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.41  E-value=0.0026  Score=55.99  Aligned_cols=151  Identities=13%  Similarity=0.045  Sum_probs=75.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEE-ecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh-
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~-D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a-   78 (300)
                      +.++++|+||+|.+|..++..|++.|.       ++++. +.+  .++++....++......   ...++.-..+...+ 
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~-------~v~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   73 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGY-------DIAVNYARS--RKAAEETAEEIEALGRKALAVKANVGDVEKIKEMF   73 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCC--HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence            346899999999999999999998774       55553 443  23333222222211100   00011101111122 


Q ss_pred             ------cCCCcEEEEeCCCCCC-C--CCcHH---HHHHhhHHHHHHHHHHHhhhcC--CCeEEEEecCchhhHHHHHHHH
Q 022227           79 ------CTGVNIAVMVGGFPRK-E--GMERK---DVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        79 ------~~~aDvVi~~ag~~~~-~--g~~r~---dl~~~N~~i~~~i~~~i~~~~~--~~~~viv~sNP~~~~~~~~~~~  144 (300)
                            +...|+||+.||.... +  ..+..   ..+..|......+++.+.++..  +..++|++|+...        .
T Consensus        74 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~--------~  145 (250)
T PRK08063         74 AQIDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGS--------I  145 (250)
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhh--------c
Confidence                  2358999999986421 1  11222   2345666555555555544321  1235666665221        0


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                       ...|....++.++.-...+...+++.+
T Consensus       146 -~~~~~~~~y~~sK~a~~~~~~~~~~~~  172 (250)
T PRK08063        146 -RYLENYTTVGVSKAALEALTRYLAVEL  172 (250)
T ss_pred             -cCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence             112222345556666666666666654

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.39  E-value=0.0013  Score=60.53  Aligned_cols=73  Identities=30%  Similarity=0.299  Sum_probs=48.2

Q ss_pred             CCCC-CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc
Q 022227            1 MAKE-PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC   79 (300)
Q Consensus         1 m~~~-~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~   79 (300)
                      |+.. .+||+|+| +|.+|..++..|...+..     .++.++|.++  +.++. ..+.   .  .  ......+..+++
T Consensus         1 ~~~~~~~~I~IIG-~G~mG~sla~~l~~~g~~-----~~V~~~dr~~--~~~~~-a~~~---g--~--~~~~~~~~~~~~   64 (307)
T PRK07502          1 MSAPLFDRVALIG-IGLIGSSLARAIRRLGLA-----GEIVGADRSA--ETRAR-AREL---G--L--GDRVTTSAAEAV   64 (307)
T ss_pred             CCccCCcEEEEEe-eCHHHHHHHHHHHhcCCC-----cEEEEEECCH--HHHHH-HHhC---C--C--CceecCCHHHHh
Confidence            6554 37999999 899999999999877641     1688999863  33221 1111   0  0  011234566778


Q ss_pred             CCCcEEEEeC
Q 022227           80 TGVNIAVMVG   89 (300)
Q Consensus        80 ~~aDvVi~~a   89 (300)
                      ++||+||++.
T Consensus        65 ~~aDvViiav   74 (307)
T PRK07502         65 KGADLVILCV   74 (307)
T ss_pred             cCCCEEEECC
Confidence            9999999985

>PRK07904 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.0031  Score=56.13  Aligned_cols=120  Identities=12%  Similarity=0.187  Sum_probs=66.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcc-cCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-C---CcccEEEeCC----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGV-MLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-P---LLKGVVATTD----   74 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~-~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-~---~~~~v~~~~~----   74 (300)
                      ++++|.|+||+|.+|.+++..|+..+ .       .|++.+++++ ..++....++..... .   ...++.-..+    
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~-------~V~~~~r~~~-~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~   78 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPA-------RVVLAALPDD-PRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKV   78 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCC-------eEEEEeCCcc-hhHHHHHHHHHhcCCCceEEEEecCCChHHHHHH
Confidence            45789999999999999999998764 3       6888887642 113333233322110 0   0001110111    


Q ss_pred             hhhhc--CCCcEEEEeCCCCCCCCC---cH---HHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCc
Q 022227           75 AVEAC--TGVNIAVMVGGFPRKEGM---ER---KDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        75 ~~~a~--~~aDvVi~~ag~~~~~g~---~r---~dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                      ..+..  .+.|++|+.+|.......   +.   .+.+..|+...    +.+.+.+.+...  ..++++|.-
T Consensus        79 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~--~~iv~isS~  147 (253)
T PRK07904         79 IDAAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF--GQIIAMSSV  147 (253)
T ss_pred             HHHHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC--ceEEEEech
Confidence            11111  379999998887532111   11   13466666433    456677766543  356776653

>PRK06483 dihydromonapterin reductase; Provisional

Probab=97.37  E-value=0.0049  Score=53.90  Aligned_cols=147  Identities=14%  Similarity=0.113  Sum_probs=77.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhh--------hhhhhhhccCCcccEEEeCChhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGV--------KMELVDAAFPLLKGVVATTDAVE   77 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~--------~~dl~~~~~~~~~~v~~~~~~~~   77 (300)
                      +++.|+||+|.+|..++..|+..|.       ++++.|.++. +..+..        ..|+.+...  ...+  .....+
T Consensus         3 k~vlItGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~-~~~~~~~~~~~~~~~~D~~~~~~--~~~~--~~~~~~   70 (236)
T PRK06483          3 APILITGAGQRIGLALAWHLLAQGQ-------PVIVSYRTHY-PAIDGLRQAGAQCIQADFSTNAG--IMAF--IDELKQ   70 (236)
T ss_pred             ceEEEECCCChHHHHHHHHHHHCCC-------eEEEEeCCch-hHHHHHHHcCCEEEEcCCCCHHH--HHHH--HHHHHh
Confidence            5799999999999999999998775       6888887642 111100        111111100  0000  001112


Q ss_pred             hcCCCcEEEEeCCCCCC--CC-CcH---HHHHHhhHHHHH----HHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCC
Q 022227           78 ACTGVNIAVMVGGFPRK--EG-MER---KDVMSKNVSIYK----AQASALEQHAAPNCKVLVVANPANTNALILKEFAPS  147 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~--~g-~~r---~dl~~~N~~i~~----~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~  147 (300)
                      .+...|++|+.||....  +. .+.   .+.+..|+....    .+.+.+.+...+...+++++....       .  .+
T Consensus        71 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~-------~--~~  141 (236)
T PRK06483         71 HTDGLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVV-------E--KG  141 (236)
T ss_pred             hCCCccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhh-------c--cC
Confidence            23458999999986421  11 122   234555655443    344444433211234666554221       1  12


Q ss_pred             CCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          148 IPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       148 ~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .|....|+.++.--..+.+.+++++.
T Consensus       142 ~~~~~~Y~asKaal~~l~~~~a~e~~  167 (236)
T PRK06483        142 SDKHIAYAASKAALDNMTLSFAAKLA  167 (236)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHC
Confidence            23223466676666777888888875

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.37  E-value=0.001  Score=61.84  Aligned_cols=75  Identities=28%  Similarity=0.309  Sum_probs=50.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh----ccCCcccEEEeCChhhhcC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA----AFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~----~~~~~~~v~~~~~~~~a~~   80 (300)
                      +|||+|+| +|.+|+.++..|+..|.       +|.++|.++  ++++.....-.+.    ......++..++++.++++
T Consensus         4 ~m~I~iIG-~G~mG~~ia~~L~~~G~-------~V~~~~r~~--~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~   73 (328)
T PRK14618          4 GMRVAVLG-AGAWGTALAVLAASKGV-------PVRLWARRP--EFAAALAAERENREYLPGVALPAELYPTADPEEALA   73 (328)
T ss_pred             CCeEEEEC-cCHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc
Confidence            57999999 79999999999998764       799999853  3333221110000    1111223556667778889


Q ss_pred             CCcEEEEeC
Q 022227           81 GVNIAVMVG   89 (300)
Q Consensus        81 ~aDvVi~~a   89 (300)
                      ++|+||++.
T Consensus        74 ~aD~Vi~~v   82 (328)
T PRK14618         74 GADFAVVAV   82 (328)
T ss_pred             CCCEEEEEC
Confidence            999999873

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.37  E-value=0.0021  Score=60.79  Aligned_cols=103  Identities=13%  Similarity=0.092  Sum_probs=63.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc-cCCcccEEEeCChhhhcCCCc
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~-~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ++||.|+| +|+||+.++..|++.+-      .+|.+.|+..  +++..... ..+.. ....-++.-...+.+.+++.|
T Consensus         1 m~~ilviG-aG~Vg~~va~~la~~~d------~~V~iAdRs~--~~~~~i~~-~~~~~v~~~~vD~~d~~al~~li~~~d   70 (389)
T COG1748           1 MMKILVIG-AGGVGSVVAHKLAQNGD------GEVTIADRSK--EKCARIAE-LIGGKVEALQVDAADVDALVALIKDFD   70 (389)
T ss_pred             CCcEEEEC-CchhHHHHHHHHHhCCC------ceEEEEeCCH--HHHHHHHh-hccccceeEEecccChHHHHHHHhcCC
Confidence            37999999 69999999999998763      2899999863  33332211 11100 001111112235678899999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT  136 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~  136 (300)
                      +||.++..+.            +    ..+++++.+.+   +-++-.|+-.+.
T Consensus        71 ~VIn~~p~~~------------~----~~i~ka~i~~g---v~yvDts~~~~~  104 (389)
T COG1748          71 LVINAAPPFV------------D----LTILKACIKTG---VDYVDTSYYEEP  104 (389)
T ss_pred             EEEEeCCchh------------h----HHHHHHHHHhC---CCEEEcccCCch
Confidence            9999974331            1    25666666664   336777765544

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.35  E-value=0.0068  Score=55.00  Aligned_cols=157  Identities=20%  Similarity=0.205  Sum_probs=94.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-----cccEEEeCCh---
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-----LKGVVATTDA---   75 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-----~~~v~~~~~~---   75 (300)
                      ..+.|+||||+.-||.++|+.|+..|.       .++|+...  .++++-...++.......     ..+++-..+.   
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~-------~l~lvar~--~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~   81 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGA-------KLVLVARR--ARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKF   81 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-------ceEEeehh--hhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHH
Confidence            456899999999999999999999886       46666653  244543434443322111     0111111111   


Q ss_pred             ----hhhcCCCcEEEEeCCCCCCCCC------cHHHHHHhh----HHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           76 ----VEACTGVNIAVMVGGFPRKEGM------ERKDVMSKN----VSIYKAQASALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        76 ----~~a~~~aDvVi~~ag~~~~~g~------~r~dl~~~N----~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                          ..-+.+.|+.|.-||..+..-.      +...+++.|    +-.++...+.+++..  +..|+++++....     
T Consensus        82 ~~~~~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~--~GhIVvisSiaG~-----  154 (282)
T KOG1205|consen   82 VEWAIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN--DGHIVVISSIAGK-----  154 (282)
T ss_pred             HHHHHHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC--CCeEEEEeccccc-----
Confidence                2346789999999999872211      122345555    577888888888875  3467777765542     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                          ..+|..-+|+-++-.-..|-.-|..++.-....|+
T Consensus       155 ----~~~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~  189 (282)
T KOG1205|consen  155 ----MPLPFRSIYSASKHALEGFFETLRQELIPLGTIII  189 (282)
T ss_pred             ----cCCCcccccchHHHHHHHHHHHHHHHhhccCceEE
Confidence                13443346777666655666666666654444444

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=97.33  E-value=0.011  Score=52.68  Aligned_cols=151  Identities=11%  Similarity=0.112  Sum_probs=80.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc----CCcccEEEeCC-----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF----PLLKGVVATTD-----   74 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~----~~~~~v~~~~~-----   74 (300)
                      +.+++.|+||++.||.+++..|++.|.       .+++.+.. +.++++....++.....    ....+++-..+     
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~-------~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   78 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGV-------NIAFTYNS-NVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELF   78 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCC-CHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence            457899999999999999999998875       67776543 23444433333322100    00011110001     


Q ss_pred             --hhhhcCCCcEEEEeCCCCCC-------C--CCcH---HHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhh
Q 022227           75 --AVEACTGVNIAVMVGGFPRK-------E--GMER---KDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANT  136 (300)
Q Consensus        75 --~~~a~~~aDvVi~~ag~~~~-------~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~  136 (300)
                        ..+.+...|++|+.||....       +  ..+.   ...+..|+.    ..+.+.+.+++..  ...+|++|.....
T Consensus        79 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~  156 (260)
T PRK08416         79 KKIDEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVG--GGSIISLSSTGNL  156 (260)
T ss_pred             HHHHHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccC--CEEEEEEeccccc
Confidence              11223468999999975311       1  0111   122334433    3445555555432  2467777654321


Q ss_pred             HHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       137 ~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                               ...|....++.++.-...+...+++++.
T Consensus       157 ---------~~~~~~~~Y~asK~a~~~~~~~la~el~  184 (260)
T PRK08416        157 ---------VYIENYAGHGTSKAAVETMVKYAATELG  184 (260)
T ss_pred             ---------cCCCCcccchhhHHHHHHHHHHHHHHhh
Confidence                     1122222467777777788888888875

>PRK05855 short chain dehydrogenase; Validated

Probab=97.32  E-value=0.0027  Score=62.80  Aligned_cols=151  Identities=15%  Similarity=0.045  Sum_probs=81.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEeCChh----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAV----   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~~~~----   76 (300)
                      +.+++.|+||+|.+|.+++..|+..|.       +|++.+++.  ++++....++.....   ....+++-.....    
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~  384 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA-------EVVASDIDE--AAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAE  384 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence            446899999999999999999998875       788998863  344333333321100   0000110000111    


Q ss_pred             ---hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHH----HHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           77 ---EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQAS----ALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        77 ---~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~----~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                         +.+...|++|+.||.....   ..+.   ...+..|+.....+.+    .+.+.+. ...+|++|+-...       
T Consensus       385 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~-------  456 (582)
T PRK05855        385 WVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGT-GGHIVNVASAAAY-------  456 (582)
T ss_pred             HHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEECChhhc-------
Confidence               1223579999999985421   1122   2345677655555444    4444432 2457777653321       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                        .+.|....++.++.-...+...++.++.
T Consensus       457 --~~~~~~~~Y~~sKaa~~~~~~~l~~e~~  484 (582)
T PRK05855        457 --APSRSLPAYATSKAAVLMLSECLRAELA  484 (582)
T ss_pred             --cCCCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence              1222222455555555556666666654

>PRK08324 short chain dehydrogenase; Validated

Probab=97.31  E-value=0.0016  Score=66.63  Aligned_cols=150  Identities=20%  Similarity=0.179  Sum_probs=78.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh--ccCCcccEEEeCChhhh----
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA--AFPLLKGVVATTDAVEA----   78 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~--~~~~~~~v~~~~~~~~a----   78 (300)
                      .++|.|+||+|+||+.++..|+..|.       +|+++|++.  +.++....++...  ......++.-..+..++    
T Consensus       422 gk~vLVTGasggIG~~la~~L~~~Ga-------~Vvl~~r~~--~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~  492 (681)
T PRK08324        422 GKVALVTGAAGGIGKATAKRLAAEGA-------CVVLADLDE--EAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEA  492 (681)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcC-------EEEEEeCCH--HHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHH
Confidence            36899999999999999999998774       799999864  3333222222210  00000011000111122    


Q ss_pred             ---cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHH----HHHhhhcCCCeEEEEecCchhhHHHHHHHHC
Q 022227           79 ---CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQA----SALEQHAAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        79 ---~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~----~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                         +.+.|+||++||.....   ..+.   ...+..|......+.    +.+++... +..+|++|+-...         
T Consensus       493 ~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~-~g~iV~vsS~~~~---------  562 (681)
T PRK08324        493 ALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGL-GGSIVFIASKNAV---------  562 (681)
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CcEEEEECCcccc---------
Confidence               23689999999865321   1122   223556666555554    44444322 2456766653221         


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .+.|....++.++.....+.+.++..++
T Consensus       563 ~~~~~~~~Y~asKaa~~~l~~~la~e~~  590 (681)
T PRK08324        563 NPGPNFGAYGAAKAAELHLVRQLALELG  590 (681)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence            0112112344455555556666666664

>PRK07680 late competence protein ComER; Validated

Probab=97.31  E-value=0.003  Score=57.11  Aligned_cols=100  Identities=13%  Similarity=0.215  Sum_probs=61.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+|+| +|.+|..++..|...+.+.   +.++.++|+++  ++++.    +.+..    ..+....+..+.++++|+|
T Consensus         1 m~I~iIG-~G~mG~ala~~L~~~g~~~---~~~v~v~~r~~--~~~~~----~~~~~----~g~~~~~~~~~~~~~aDiV   66 (273)
T PRK07680          1 MNIGFIG-TGNMGTILIEAFLESGAVK---PSQLTITNRTP--AKAYH----IKERY----PGIHVAKTIEEVISQSDLI   66 (273)
T ss_pred             CEEEEEC-ccHHHHHHHHHHHHCCCCC---cceEEEECCCH--HHHHH----HHHHc----CCeEEECCHHHHHHhCCEE
Confidence            4899999 7999999999998876421   12688898853  33322    11110    1233445667778999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      |++.- |               ..+.++++.+..+-.++..+|-++|.+.
T Consensus        67 ilav~-p---------------~~~~~vl~~l~~~l~~~~~iis~~ag~~  100 (273)
T PRK07680         67 FICVK-P---------------LDIYPLLQKLAPHLTDEHCLVSITSPIS  100 (273)
T ss_pred             EEecC-H---------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            99851 1               1123344444443323446777788663

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.30  E-value=0.0018  Score=58.57  Aligned_cols=161  Identities=14%  Similarity=0.144  Sum_probs=82.8

Q ss_pred             CCCCCcEEEEEcCC--ChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc-hhhhhhhhhhhhhhccCCcccEEEeCC---
Q 022227            1 MAKEPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPA-AEALNGVKMELVDAAFPLLKGVVATTD---   74 (300)
Q Consensus         1 m~~~~~kV~IiGAa--G~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~-~~~l~g~~~dl~~~~~~~~~~v~~~~~---   74 (300)
                      |.++.+.+.||||+  +-||..++..|++.|.       .+++.|+++. .++++....++... .....++.-..+   
T Consensus         1 ~~l~~k~~lItGas~~~GIG~aiA~~la~~G~-------~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~   72 (274)
T PRK08415          1 MIMKGKKGLIVGVANNKSIAYGIAKACFEQGA-------ELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKS   72 (274)
T ss_pred             CccCCcEEEEECCCCCCCHHHHHHHHHHHCCC-------EEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHH
Confidence            66777899999976  6899999999998875       6888887521 11222111111100 000000000000   


Q ss_pred             ----hhhhcCCCcEEEEeCCCCCC-----C--CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH
Q 022227           75 ----AVEACTGVNIAVMVGGFPRK-----E--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        75 ----~~~a~~~aDvVi~~ag~~~~-----~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                          ..+.+...|++|+.||....     +  ..+.   ...+..|+.....+.+.+...-.++..+|++|.-...    
T Consensus        73 ~~~~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~----  148 (274)
T PRK08415         73 LAESLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGV----  148 (274)
T ss_pred             HHHHHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCc----
Confidence                11223567999999997421     1  2232   2346667555444444333321122356666642210    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                           ...|....|+.++--...+.+.+|.++.  +..|+
T Consensus       149 -----~~~~~~~~Y~asKaal~~l~~~la~el~--~~gIr  181 (274)
T PRK08415        149 -----KYVPHYNVMGVAKAALESSVRYLAVDLG--KKGIR  181 (274)
T ss_pred             -----cCCCcchhhhhHHHHHHHHHHHHHHHhh--hcCeE
Confidence                 1122222355666666667777787764  34454

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=97.30  E-value=0.0037  Score=54.95  Aligned_cols=151  Identities=17%  Similarity=0.082  Sum_probs=76.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC---cccEEEeCChhh-----
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAVE-----   77 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~---~~~v~~~~~~~~-----   77 (300)
                      ++|.|+||+|++|+.++..|++.|.       ++++.+.+. .+.++....++.......   ..++.-..+..+     
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   74 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGW-------SVGINYARD-AAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAV   74 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHH
Confidence            5899999999999999999998774       566654321 233333322332211000   001110111111     


Q ss_pred             --hcCCCcEEEEeCCCCCC--C--CCcHH---HHHHhhHHHHHHHHH----HHhhhcC-CCeEEEEecCchhhHHHHHHH
Q 022227           78 --ACTGVNIAVMVGGFPRK--E--GMERK---DVMSKNVSIYKAQAS----ALEQHAA-PNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        78 --a~~~aDvVi~~ag~~~~--~--g~~r~---dl~~~N~~i~~~i~~----~i~~~~~-~~~~viv~sNP~~~~~~~~~~  143 (300)
                        .+...|++|++||....  +  ..+..   ..+..|......+++    .+....+ +..++|++++....       
T Consensus        75 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~-------  147 (248)
T PRK06947         75 QSAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASR-------  147 (248)
T ss_pred             HHhcCCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhc-------
Confidence              13468999999986421  1  12222   235566655444443    3322211 12357777754321       


Q ss_pred             HCCCCCCC-cEEeeehhhHHHHHHHHHHHcC
Q 022227          144 FAPSIPAK-NITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       144 ~~~~~p~~-~i~~~t~ld~~R~~~~la~~l~  173 (300)
                        .+.+.. ..++.++.-...+...+++++.
T Consensus       148 --~~~~~~~~~Y~~sK~~~~~~~~~la~~~~  176 (248)
T PRK06947        148 --LGSPNEYVDYAGSKGAVDTLTLGLAKELG  176 (248)
T ss_pred             --CCCCCCCcccHhhHHHHHHHHHHHHHHhh
Confidence              111211 2356666665666677777664

>TIGR02415 23BDH acetoin reductases

Probab=97.30  E-value=0.0069  Score=53.39  Aligned_cols=149  Identities=18%  Similarity=0.191  Sum_probs=76.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh-----
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE-----   77 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~-----   77 (300)
                      ++++|+||+|.+|.+++..|++.|.       ++++++.++  +.++....++......   ...++.-..+..+     
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~   71 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGF-------AVAVADLNE--ETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQA   71 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence            3689999999999999999998874       688888753  3333222222211100   0001100001111     


Q ss_pred             --hcCCCcEEEEeCCCCCC-C--CCcHH---HHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHC
Q 022227           78 --ACTGVNIAVMVGGFPRK-E--GMERK---DVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        78 --a~~~aDvVi~~ag~~~~-~--g~~r~---dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                        .+...|+||+++|.... +  +.+..   ..+..|+...    +.+.+.+++... ..+++++|.-...         
T Consensus        72 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~---------  141 (254)
T TIGR02415        72 AEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGH-GGKIINAASIAGH---------  141 (254)
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC-CeEEEEecchhhc---------
Confidence              13357999999987431 1  22222   3355665433    344455555433 2356655532211         


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .+.|...-++.++.-...+...+++++.
T Consensus       142 ~~~~~~~~Y~~sK~a~~~~~~~l~~~~~  169 (254)
T TIGR02415       142 EGNPILSAYSSTKFAVRGLTQTAAQELA  169 (254)
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence            1222222345555555556666666654

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.29  E-value=0.0017  Score=59.04  Aligned_cols=65  Identities=14%  Similarity=0.126  Sum_probs=43.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+|+| .|.+|.+++..|...|.       +|.++|.++  +.++. ..+.  ...    . ...++ .+++++||+|
T Consensus         1 m~I~IIG-~G~mG~sla~~L~~~g~-------~V~~~d~~~--~~~~~-a~~~--g~~----~-~~~~~-~~~~~~aDlV   61 (279)
T PRK07417          1 MKIGIVG-LGLIGGSLGLDLRSLGH-------TVYGVSRRE--STCER-AIER--GLV----D-EASTD-LSLLKDCDLV   61 (279)
T ss_pred             CeEEEEe-ecHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHH-HHHC--CCc----c-cccCC-HhHhcCCCEE
Confidence            4899999 89999999999988764       799999863  33221 1111  000    0 11223 3568999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++.
T Consensus        62 ilav   65 (279)
T PRK07417         62 ILAL   65 (279)
T ss_pred             EEcC
Confidence            9984

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.28  E-value=0.0017  Score=60.12  Aligned_cols=140  Identities=12%  Similarity=0.142  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHhcccCCCCCCeEEEEEecCCch--------hhhhhhhhhhhhhc-----c------CCcccEEEeCC--h
Q 022227           17 IGYALVPMIARGVMLGTDQPVILHMLDIPPAA--------EALNGVKMELVDAA-----F------PLLKGVVATTD--A   75 (300)
Q Consensus        17 vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~--------~~l~g~~~dl~~~~-----~------~~~~~v~~~~~--~   75 (300)
                      +|+.++..++..|+       +|+|+|.++..        ++.........+..     .      ....+++.+++  .
T Consensus         1 MG~giA~~~a~~G~-------~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   73 (314)
T PRK08269          1 MGQGIALAFAFAGH-------DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGA   73 (314)
T ss_pred             CcHHHHHHHHhCCC-------eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcch
Confidence            47788888888775       89999997521        11111111111100     0      11356776654  6


Q ss_pred             hhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhH-HHHHHHHC-C----C--
Q 022227           76 VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN-ALILKEFA-P----S--  147 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~-~~~~~~~~-~----~--  147 (300)
                      ++++++||+||.+.              .++.++.+.+...+.+.+++++  |+.||.+... +.+..... +    +  
T Consensus        74 ~~a~~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~--ilaSntS~~~~~~la~~~~~p~r~~g~H  137 (314)
T PRK08269         74 ADALADADLVFEAV--------------PEVLDAKREALRWLGRHVDADA--IIASTTSTFLVTDLQRHVAHPERFLNAH  137 (314)
T ss_pred             HHHhccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCc--EEEEccccCCHHHHHhhcCCcccEEEEe
Confidence            68899999999983              3456777788888999988775  4488876533 34433220 1    0  


Q ss_pred             --CCCCc-----EEe--eehhhHHHHHHHHHHHcCCCCCCe
Q 022227          148 --IPAKN-----ITC--LTRLDHNRALGQISEKLNVQVSDV  179 (300)
Q Consensus       148 --~p~~~-----i~~--~t~ld~~R~~~~la~~l~v~~~~V  179 (300)
                        .|+..     +..  .|.-++......+.+.+|..|..+
T Consensus       138 f~~Pp~~~~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v  178 (314)
T PRK08269        138 WLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVC  178 (314)
T ss_pred             cCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence              13321     222  355555444556667788666433

>PRK12743 oxidoreductase; Provisional

Probab=97.28  E-value=0.011  Score=52.53  Aligned_cols=150  Identities=11%  Similarity=0.109  Sum_probs=76.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCCh-------
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDA-------   75 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~-------   75 (300)
                      .+|.|+||+|.+|++++..|++.|.       ++++.+... .+.++....++......   ...++.-..+.       
T Consensus         3 k~vlItGas~giG~~~a~~l~~~G~-------~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   74 (256)
T PRK12743          3 QVAIVTASDSGIGKACALLLAQQGF-------DIGITWHSD-EEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKL   74 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCC-hHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence            5899999999999999999998875       676665432 22332222222211100   00011000011       


Q ss_pred             hhhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhh----cCCCeEEEEecCchhhHHHHHHHHC
Q 022227           76 VEACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQH----AAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~----~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                      .+.+...|++|+.+|.....   ..+.   .+.+..|......+.+.+.++    .. ..++|++|+-...         
T Consensus        75 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~-~g~ii~isS~~~~---------  144 (256)
T PRK12743         75 IQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQ-GGRIINITSVHEH---------  144 (256)
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CeEEEEEeecccc---------
Confidence            11224579999999874321   1121   234566766666665544432    21 2467777653210         


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ...+..-.++.++.....+.+.+++++.
T Consensus       145 ~~~~~~~~Y~~sK~a~~~l~~~la~~~~  172 (256)
T PRK12743        145 TPLPGASAYTAAKHALGGLTKAMALELV  172 (256)
T ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence            1112122345555555556666666654

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.28  E-value=0.0044  Score=54.85  Aligned_cols=73  Identities=22%  Similarity=0.185  Sum_probs=46.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      |+.+||+|+| +|.+|..++..|+..+...   ..+++.++... .++++.    +.+..     .+..+++..+.++++
T Consensus         2 m~~~kI~iIG-~G~mg~ala~~l~~~~~~~---~~~i~~~~~~~-~~~~~~----~~~~~-----~~~~~~~~~~~~~~~   67 (245)
T PRK07634          2 LKKHRILFIG-AGRMAEAIFSGLLKTSKEY---IEEIIVSNRSN-VEKLDQ----LQARY-----NVSTTTDWKQHVTSV   67 (245)
T ss_pred             CCCCeEEEEC-cCHHHHHHHHHHHhCCCCC---cCeEEEECCCC-HHHHHH----HHHHc-----CcEEeCChHHHHhcC
Confidence            4568999999 7999999999988765211   11366676531 233332    22111     122345677788999


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |+||++.
T Consensus        68 DiViiav   74 (245)
T PRK07634         68 DTIVLAM   74 (245)
T ss_pred             CEEEEec
Confidence            9999973

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=97.28  E-value=0.0031  Score=55.12  Aligned_cols=118  Identities=19%  Similarity=0.136  Sum_probs=62.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEeCChhhh----
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAVEA----   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~~~~~a----   78 (300)
                      ++++|+||+|++|++++..|++.|.       .+++.+.++. +.++.....+.....   ....++.-..+..++    
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~-------~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   74 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGY-------RVIATYFSGN-DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEI   74 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEeCCcH-HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence            4899999999999999999998764       6888887632 212111111110000   000011101111111    


Q ss_pred             ---cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEecCc
Q 022227           79 ---CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        79 ---~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i----~~~i~~~~~~~~~viv~sNP  133 (300)
                         +...|++|+.+|.....   ..+.   ...+..|+.....+    .+.+++..  ..++|++|+.
T Consensus        75 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~iss~  140 (245)
T PRK12824         75 EEEEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQG--YGRIINISSV  140 (245)
T ss_pred             HHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--CeEEEEECCh
Confidence               33589999999865311   1122   23455676665555    44445443  2467777753

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.27  E-value=0.0017  Score=57.64  Aligned_cols=36  Identities=25%  Similarity=0.279  Sum_probs=31.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      +.++|.|+||+|++|.+++..|++.|.       +++++|++.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~-------~v~~~~r~~   41 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGA-------TVVVGDIDP   41 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-------EEEEEeCCH
Confidence            456899999999999999999998774       788898863

>PRK08251 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.0077  Score=52.94  Aligned_cols=116  Identities=16%  Similarity=0.211  Sum_probs=64.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-----CcccEEEeCC------
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-----LLKGVVATTD------   74 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-----~~~~v~~~~~------   74 (300)
                      +++.||||+|.+|.+++..|++.|.       .+++.++++  ++++....++......     ...++.-..+      
T Consensus         3 k~vlItGas~giG~~la~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   73 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAKGR-------DLALCARRT--DRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFA   73 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHH
Confidence            5799999999999999999998764       688888753  3343333333221100     0001100001      


Q ss_pred             -hhhhcCCCcEEEEeCCCCCCCCC---c---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecC
Q 022227           75 -AVEACTGVNIAVMVGGFPRKEGM---E---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVAN  132 (300)
Q Consensus        75 -~~~a~~~aDvVi~~ag~~~~~g~---~---r~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sN  132 (300)
                       ..+.+...|++|+.||.......   +   -...+..|+.....+.+.+    ++...  .++|++|+
T Consensus        74 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~iv~~sS  140 (248)
T PRK08251         74 EFRDELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGS--GHLVLISS  140 (248)
T ss_pred             HHHHHcCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CeEEEEec
Confidence             12234578999999987532211   1   1234566766555555544    34332  25666664

>PRK06484 short chain dehydrogenase; Validated

Probab=97.26  E-value=0.0024  Score=62.85  Aligned_cols=123  Identities=20%  Similarity=0.127  Sum_probs=66.8

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCC------
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD------   74 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~------   74 (300)
                      |+.+.+.+.||||++.+|..++..|++.|.       .|++++.+.  ++++....++.........++.-..+      
T Consensus         1 ~~~~~k~~lITGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   71 (520)
T PRK06484          1 SKAQSRVVLVTGAAGGIGRAACQRFARAGD-------QVVVADRNV--ERARERADSLGPDHHALAMDVSDEAQIREGFE   71 (520)
T ss_pred             CCCCCeEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCceeEEEeccCCHHHHHHHHH
Confidence            445567899999999999999999998874       688888753  33332222221100000001100001      


Q ss_pred             -hhhhcCCCcEEEEeCCCCC---CC--CCcH---HHHHHhhHHHHHHHH----HHHhhhcCCCeEEEEecCc
Q 022227           75 -AVEACTGVNIAVMVGGFPR---KE--GMER---KDVMSKNVSIYKAQA----SALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        75 -~~~a~~~aDvVi~~ag~~~---~~--g~~r---~dl~~~N~~i~~~i~----~~i~~~~~~~~~viv~sNP  133 (300)
                       ..+.+...|++|+.||...   .+  ..+.   ...+..|+.....+.    +.+.+... ...+|++++-
T Consensus        72 ~~~~~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~~iv~isS~  142 (520)
T PRK06484         72 QLHREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGH-GAAIVNVASG  142 (520)
T ss_pred             HHHHHhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CCeEEEECCc
Confidence             1222356899999998721   11  1222   334566665444444    44433322 2367777754

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.25  E-value=0.0023  Score=58.78  Aligned_cols=158  Identities=17%  Similarity=0.101  Sum_probs=81.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh--
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a--   78 (300)
                      +.+++.||||+|.+|..++..|+..|.       .+++.|... .+.++....++......   ...++.-..+..+.  
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-------~Vv~~~~~~-~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~   82 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGA-------TVVVNDVAS-ALDASDVLDEIRAAGAKAVAVAGDISQRATADELVA   82 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEecCCc-hhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence            457899999999999999999998874       688888743 22333222223211100   00011000011111  


Q ss_pred             ----cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHh----hhc-----CCCeEEEEecCchhhHHH
Q 022227           79 ----CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALE----QHA-----APNCKVLVVANPANTNAL  139 (300)
Q Consensus        79 ----~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~----~~~-----~~~~~viv~sNP~~~~~~  139 (300)
                          +...|++|+.||..+..   ..+.   ...+..|+.....+.+.+.    +..     .....+|++++....   
T Consensus        83 ~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~---  159 (306)
T PRK07792         83 TAVGLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGL---  159 (306)
T ss_pred             HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccc---
Confidence                34689999999986532   1222   2345667665555554432    211     011356666543321   


Q ss_pred             HHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       140 ~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                            .+.+..-.|+.++.-...+...+++.+.  +.+|+
T Consensus       160 ------~~~~~~~~Y~asKaal~~l~~~la~e~~--~~gI~  192 (306)
T PRK07792        160 ------VGPVGQANYGAAKAGITALTLSAARALG--RYGVR  192 (306)
T ss_pred             ------cCCCCCchHHHHHHHHHHHHHHHHHHhh--hcCeE
Confidence                  1111111345555555566666666553  34455

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.0022  Score=58.47  Aligned_cols=120  Identities=23%  Similarity=0.206  Sum_probs=67.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc--ccEEEeCCh------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL--KGVVATTDA------   75 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~--~~v~~~~~~------   75 (300)
                      +.++++|+||+|.+|..++..|+..|.       ++++.+.++  ++++....++........  .++.-..+.      
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~   78 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA-------KLALVDLEE--AELAALAAELGGDDRVLTVVADVTDLAAMQAAAEE   78 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHH
Confidence            346899999999999999999998875       788898853  444433333321100000  011000011      


Q ss_pred             -hhhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEecC
Q 022227           76 -VEACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHA-APNCKVLVVAN  132 (300)
Q Consensus        76 -~~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~-~~~~~viv~sN  132 (300)
                       .+.+...|+||+.||.....   ..+.   .+.+..|+.....+.+.+..+- .+...+|++|+
T Consensus        79 ~~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS  143 (296)
T PRK05872         79 AVERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSS  143 (296)
T ss_pred             HHHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence             12235689999999974321   1122   2346677776666666554321 11235677664

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=97.22  E-value=0.0026  Score=58.67  Aligned_cols=124  Identities=20%  Similarity=0.258  Sum_probs=71.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+|+| +|.||+.++..|.+.| -      ++.++-+++..++++..-+.+.+....... ........+....+|+|
T Consensus         1 mkI~IlG-aGAvG~l~g~~L~~~g-~------~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~-~~~~~~~~~~~~~~Dlv   71 (307)
T COG1893           1 MKILILG-AGAIGSLLGARLAKAG-H------DVTLLVRSRRLEALKKKGLRIEDEGGNFTT-PVVAATDAEALGPADLV   71 (307)
T ss_pred             CeEEEEC-CcHHHHHHHHHHHhCC-C------eEEEEecHHHHHHHHhCCeEEecCCCcccc-ccccccChhhcCCCCEE
Confidence            5999999 7999999999999876 1      455655542112332222222222210011 11222345667799999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-Eeeeh
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTR  158 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~  158 (300)
                      |++.-    ..            ...+..+.+..+.+++.+|+..-|=....- .+.+.   +|.+++ .|.|.
T Consensus        72 iv~vK----a~------------q~~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~---~~~~~il~G~~~  125 (307)
T COG1893          72 IVTVK----AY------------QLEEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRKI---LPKETVLGGVTT  125 (307)
T ss_pred             EEEec----cc------------cHHHHHHHhhhcCCCCcEEEEEeCCCcHHH-HHHHh---CCcceEEEEEee
Confidence            99841    11            123566677777766777888888776443 34443   354443 44443

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.22  E-value=0.0039  Score=55.55  Aligned_cols=153  Identities=16%  Similarity=0.140  Sum_probs=76.5

Q ss_pred             CCcEEEEEcC--CChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeC-------C
Q 022227            4 EPVRVLVTGA--AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT-------D   74 (300)
Q Consensus         4 ~~~kV~IiGA--aG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~-------~   74 (300)
                      +.++++||||  ++-+|..++..|+..|.       .|++.|++.+.+.++....++.........++.-..       .
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~-------~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~   78 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGA-------EVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADR   78 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCC-------EEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHH
Confidence            4568999998  68999999999998875       688888653223232222222110000001111000       1


Q ss_pred             hhhhcCCCcEEEEeCCCCCC-----C--CCcHH---HHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           75 AVEACTGVNIAVMVGGFPRK-----E--GMERK---DVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~-----~--g~~r~---dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                      ..+.+...|++|+.||....     +  ..+..   ..+..|+...-.+.+.+...=.+...+++++.. ..        
T Consensus        79 ~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~-~~--------  149 (256)
T PRK07889         79 VREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFD-AT--------  149 (256)
T ss_pred             HHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeec-cc--------
Confidence            12234568999999987421     1  12222   235667654444443333221112345555421 10        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                       ...|.-..++.++.-...+.+.++.++.
T Consensus       150 -~~~~~~~~Y~asKaal~~l~~~la~el~  177 (256)
T PRK07889        150 -VAWPAYDWMGVAKAALESTNRYLARDLG  177 (256)
T ss_pred             -ccCCccchhHHHHHHHHHHHHHHHHHhh
Confidence             1112111234555555667777777764

>PRK05854 short chain dehydrogenase; Provisional

Probab=97.22  E-value=0.0024  Score=58.84  Aligned_cols=166  Identities=10%  Similarity=0.009  Sum_probs=86.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-Cc----ccEEEeCC----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LL----KGVVATTD----   74 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-~~----~~v~~~~~----   74 (300)
                      +.+++.||||++.||..++..|+..|.       +|++.+++.  ++++....++...... ..    .++.-..+    
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~-------~Vil~~R~~--~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~   83 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA-------EVILPVRNR--AKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAAL   83 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHH
Confidence            346899999999999999999998874       788888753  3443333333221100 00    00000001    


Q ss_pred             ---hhhhcCCCcEEEEeCCCCCCC--CC---cHHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           75 ---AVEACTGVNIAVMVGGFPRKE--GM---ERKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        75 ---~~~a~~~aDvVi~~ag~~~~~--g~---~r~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                         ..+.....|++|+.||....+  ..   .-...+..|...    ++.+.+.+++.   ..++|++|+-.......-.
T Consensus        84 ~~~~~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~---~~riv~vsS~~~~~~~~~~  160 (313)
T PRK05854         84 GEQLRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG---RARVTSQSSIAARRGAINW  160 (313)
T ss_pred             HHHHHHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC---CCCeEEEechhhcCCCcCc
Confidence               111234589999999874321  11   123345556544    44555555443   2356776653321100000


Q ss_pred             H---HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEE
Q 022227          143 E---FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN  181 (300)
Q Consensus       143 ~---~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~  181 (300)
                      .   ....++....++.+++-...+...+++++......|+.
T Consensus       161 ~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v  202 (313)
T PRK05854        161 DDLNWERSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITS  202 (313)
T ss_pred             ccccccccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEE
Confidence            0   00012222346667777777777788765444445653

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.19  E-value=0.0043  Score=56.37  Aligned_cols=101  Identities=13%  Similarity=0.103  Sum_probs=60.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||+|+| +|.+|+.++..|...+.+.   +.++.+++.+. .++++.    +....    ..+..+.+..++++++|+|
T Consensus         2 ~~I~iIG-~G~mG~ala~~L~~~g~~~---~~~V~~~~r~~-~~~~~~----l~~~~----~~~~~~~~~~e~~~~aDvV   68 (277)
T PRK06928          2 EKIGFIG-YGSMADMIATKLLETEVAT---PEEIILYSSSK-NEHFNQ----LYDKY----PTVELADNEAEIFTKCDHS   68 (277)
T ss_pred             CEEEEEC-ccHHHHHHHHHHHHCCCCC---cccEEEEeCCc-HHHHHH----HHHHc----CCeEEeCCHHHHHhhCCEE
Confidence            5899999 7999999999998876321   12688888753 222221    11110    1223445666778999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      |++.-.                ..++++++.+..+-+++..+|.+.+-+.
T Consensus        69 ilavpp----------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~  102 (277)
T PRK06928         69 FICVPP----------------LAVLPLLKDCAPVLTPDRHVVSIAAGVS  102 (277)
T ss_pred             EEecCH----------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            987421                2233455555443333445666666543

>PRK06125 short chain dehydrogenase; Provisional

Probab=97.18  E-value=0.0099  Score=52.77  Aligned_cols=118  Identities=19%  Similarity=0.162  Sum_probs=65.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC----CcccEEEeCC---hh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----LLKGVVATTD---AV   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~----~~~~v~~~~~---~~   76 (300)
                      +.+++.|+||+|.+|..++..|+..|.       +|++++.++  ++++....++......    ...++.-..+   ..
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~   76 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC-------HLHLVARDA--DALEALAADLRAAHGVDVAVHALDLSSPEAREQLA   76 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHH
Confidence            557899999999999999999998775       688998753  3443322223221000    0001100001   11


Q ss_pred             hhcCCCcEEEEeCCCCCC-C--CCcH---HHHHHhhHHHHH----HHHHHHhhhcCCCeEEEEecC
Q 022227           77 EACTGVNIAVMVGGFPRK-E--GMER---KDVMSKNVSIYK----AQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~-~--g~~r---~dl~~~N~~i~~----~i~~~i~~~~~~~~~viv~sN  132 (300)
                      +.+...|++|+++|.... +  ..+.   ...+..|+....    .+.+.+.+..  ...++++|+
T Consensus        77 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~iss  140 (259)
T PRK06125         77 AEAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG--SGVIVNVIG  140 (259)
T ss_pred             HHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEecC
Confidence            234578999999987532 1  1122   233556655444    4444444442  235666664

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.18  E-value=0.005  Score=55.28  Aligned_cols=68  Identities=18%  Similarity=0.266  Sum_probs=46.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEE-ecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~-D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      |||++|| .|.+|+.++..|+..++..   +.+++.+ |+++  ++++.    +.+.      .+...++..++++++|+
T Consensus         1 ~kI~~IG-~G~mG~a~a~~L~~~g~~~---~~~i~v~~~r~~--~~~~~----~~~~------g~~~~~~~~e~~~~aDv   64 (266)
T PLN02688          1 FRVGFIG-AGKMAEAIARGLVASGVVP---PSRISTADDSNP--ARRDV----FQSL------GVKTAASNTEVVKSSDV   64 (266)
T ss_pred             CeEEEEC-CcHHHHHHHHHHHHCCCCC---cceEEEEeCCCH--HHHHH----HHHc------CCEEeCChHHHHhcCCE
Confidence            5899999 8999999999999876421   2367788 6643  33321    2111      22344566677899999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      ||++.
T Consensus        65 Vil~v   69 (266)
T PLN02688         65 IILAV   69 (266)
T ss_pred             EEEEE
Confidence            99985

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.17  E-value=0.0047  Score=55.08  Aligned_cols=154  Identities=14%  Similarity=0.075  Sum_probs=78.4

Q ss_pred             CCCcEEEEEcCC--ChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch-hhhhhhhhhhhhhccCCcccEEEeCC-----
Q 022227            3 KEPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-EALNGVKMELVDAAFPLLKGVVATTD-----   74 (300)
Q Consensus         3 ~~~~kV~IiGAa--G~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~-~~l~g~~~dl~~~~~~~~~~v~~~~~-----   74 (300)
                      ++.+.+.||||+  +-||..++..|++.|.       .|++.|+++.. +.++....++.... ....++.-..+     
T Consensus         8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~-------~v~l~~r~~~~~~~~~~~~~~~~~~~-~~~~D~~~~~~v~~~~   79 (258)
T PRK07533          8 LAGKRGLVVGIANEQSIAWGCARAFRALGA-------ELAVTYLNDKARPYVEPLAEELDAPI-FLPLDVREPGQLEAVF   79 (258)
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCC-------EEEEEeCChhhHHHHHHHHHhhccce-EEecCcCCHHHHHHHH
Confidence            345678999976  4899999999998874       68888876321 11221111221100 00001100001     


Q ss_pred             --hhhhcCCCcEEEEeCCCCCC-----C--CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           75 --AVEACTGVNIAVMVGGFPRK-----E--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        75 --~~~a~~~aDvVi~~ag~~~~-----~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                        ..+.+...|++|+.||....     +  ..+.   .+.+..|+...-.+.+.+..+-.+...+++++.....      
T Consensus        80 ~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~------  153 (258)
T PRK07533         80 ARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAE------  153 (258)
T ss_pred             HHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccc------
Confidence              11223467999999987431     1  1222   3345667665555555443322122356666543210      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                         ...|....++.++--...+.+.++.+++
T Consensus       154 ---~~~~~~~~Y~asKaal~~l~~~la~el~  181 (258)
T PRK07533        154 ---KVVENYNLMGPVKAALESSVRYLAAELG  181 (258)
T ss_pred             ---cCCccchhhHHHHHHHHHHHHHHHHHhh
Confidence               0112112345555555666777777765

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=97.16  E-value=0.028  Score=49.86  Aligned_cols=157  Identities=13%  Similarity=0.129  Sum_probs=79.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCCh-----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDA-----   75 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~-----   75 (300)
                      +.+++.|+||+|.+|..++..|+..|.       .+++..... .+.++....++......   ...+++-..+.     
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~-------~vvi~~~~~-~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~   77 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKA-------KVVINYRSD-EEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQ   77 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHH
Confidence            457899999999999999999998874       566665532 22222222222211000   00011000011     


Q ss_pred             --hhhcCCCcEEEEeCCCCCCC---CCcHH---HHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           76 --VEACTGVNIAVMVGGFPRKE---GMERK---DVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        76 --~~a~~~aDvVi~~ag~~~~~---g~~r~---dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                        .+.+...|++|+.||.....   ..+..   ..+..|+...    +.+.+.+.+... ...+|++|.-..        
T Consensus        78 ~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~-~g~iv~~sS~~~--------  148 (261)
T PRK08936         78 TAVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDI-KGNIINMSSVHE--------  148 (261)
T ss_pred             HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEEccccc--------
Confidence              11233579999999874321   11222   3356665433    445555555433 235666665211        


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      . ...|....++.++.-...+.+.+++.+.  +..|+
T Consensus       149 ~-~~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~gi~  182 (261)
T PRK08936        149 Q-IPWPLFVHYAASKGGVKLMTETLAMEYA--PKGIR  182 (261)
T ss_pred             c-CCCCCCcccHHHHHHHHHHHHHHHHHHh--hcCeE
Confidence            1 1233223456665554555666666653  33454

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=97.15  E-value=0.015  Score=51.96  Aligned_cols=32  Identities=22%  Similarity=0.209  Sum_probs=26.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEec
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI   44 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~   44 (300)
                      ..+.||||+|.+|.+++..|++.|.       ++++.+.
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~-------~V~~~~~   33 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGY-------RVVLHYH   33 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCC-------eEEEEcC
Confidence            4689999999999999999998875       6777654

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.15  E-value=0.0038  Score=55.34  Aligned_cols=38  Identities=24%  Similarity=0.178  Sum_probs=31.1

Q ss_pred             CCCCCcEEEEEcCCC--hHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            1 MAKEPVRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         1 m~~~~~kV~IiGAaG--~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      |+.+.++|.|+||+|  .+|..++..|+..|.       ++++++..
T Consensus         1 ~~l~~k~vlItGas~~~giG~~la~~l~~~G~-------~vi~~~r~   40 (256)
T PRK12748          1 LPLMKKIALVTGASRLNGIGAAVCRRLAAKGI-------DIFFTYWS   40 (256)
T ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-------cEEEEcCC
Confidence            566667899999875  699999999998874       67888764

>PRK06953 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0024  Score=55.47  Aligned_cols=115  Identities=20%  Similarity=0.137  Sum_probs=63.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-CcccEEEeCChhh---hcC-
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVE---ACT-   80 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-~~~~v~~~~~~~~---a~~-   80 (300)
                      +++.|+||+|.+|++++..|+..|.       +++++|.+.  +.++.    +...... ...++.-..+..+   .+. 
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~-------~v~~~~r~~--~~~~~----~~~~~~~~~~~D~~~~~~v~~~~~~~~~   68 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW-------RVIATARDA--AALAA----LQALGAEALALDVADPASVAGLAWKLDG   68 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC-------EEEEEECCH--HHHHH----HHhccceEEEecCCCHHHHHHHHHHhcC
Confidence            4799999999999999999988764       788888763  22221    1110000 0001111111111   133 


Q ss_pred             -CCcEEEEeCCCCCC---C--CCcH---HHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEecCc
Q 022227           81 -GVNIAVMVGGFPRK---E--GMER---KDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANP  133 (300)
Q Consensus        81 -~aDvVi~~ag~~~~---~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~-~~~~viv~sNP  133 (300)
                       ..|+||+++|....   +  ..+.   ...+..|+.....+.+.+.++-. ....++++++.
T Consensus        69 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~  131 (222)
T PRK06953         69 EALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSR  131 (222)
T ss_pred             CCCCEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCc
Confidence             47999999987521   1  1122   33567787777777766654321 12345555543

>PRK07062 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.03  Score=49.78  Aligned_cols=118  Identities=19%  Similarity=0.173  Sum_probs=64.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-CcccEE--EeC--Ch----
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVV--ATT--DA----   75 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-~~~~v~--~~~--~~----   75 (300)
                      .+.+.|+||+|.+|..++..|+..|.       +|++.++++  ++++....++...... ....+.  .+.  +.    
T Consensus         8 ~k~~lItGas~giG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~   78 (265)
T PRK07062          8 GRVAVVTGGSSGIGLATVELLLEAGA-------SVAICGRDE--ERLASAEARLREKFPGARLLAARCDVLDEADVAAFA   78 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHH
Confidence            46899999999999999999998875       688898863  4444333333221000 000000  110  11    


Q ss_pred             ---hhhcCCCcEEEEeCCCCCCC---CCcHH---HHHHhh----HHHHHHHHHHHhhhcCCCeEEEEecCc
Q 022227           76 ---VEACTGVNIAVMVGGFPRKE---GMERK---DVMSKN----VSIYKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        76 ---~~a~~~aDvVi~~ag~~~~~---g~~r~---dl~~~N----~~i~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                         .+.+...|++|+.||.....   ..+..   ..+..|    ...++.+.+.+++..  ...++++|.-
T Consensus        79 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~  147 (265)
T PRK07062         79 AAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA--AASIVCVNSL  147 (265)
T ss_pred             HHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC--CcEEEEeccc
Confidence               11234679999999875321   11221   223334    334555566665543  2356776653

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.12  E-value=0.0053  Score=55.68  Aligned_cols=69  Identities=19%  Similarity=0.300  Sum_probs=46.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||++|| +|.+|++++..|++.+.+.   +.++..+|+++  ++++.    +.+..     .+...++..+.+++||+|
T Consensus         3 ~~IgfIG-~G~MG~aia~~L~~~g~~~---~~~I~v~~r~~--~~~~~----l~~~~-----g~~~~~~~~e~~~~aDiI   67 (272)
T PRK12491          3 KQIGFIG-CGNMGIAMIGGMINKNIVS---PDQIICSDLNV--SNLKN----ASDKY-----GITITTNNNEVANSADIL   67 (272)
T ss_pred             CeEEEEC-ccHHHHHHHHHHHHCCCCC---CceEEEECCCH--HHHHH----HHHhc-----CcEEeCCcHHHHhhCCEE
Confidence            4899999 8999999999999877532   12688888753  33332    21110     123344666778999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++.
T Consensus        68 iLav   71 (272)
T PRK12491         68 ILSI   71 (272)
T ss_pred             EEEe
Confidence            9984

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.11  E-value=0.0045  Score=55.62  Aligned_cols=69  Identities=22%  Similarity=0.274  Sum_probs=46.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      ++||+||| +|.+|..++..|.+.+.    .+.++.++|.++  ++++.    +.+..     .+....+..+.++++|+
T Consensus         2 mm~I~iIG-~G~mG~~la~~l~~~g~----~~~~v~v~~r~~--~~~~~----~~~~~-----g~~~~~~~~~~~~~adv   65 (267)
T PRK11880          2 MKKIGFIG-GGNMASAIIGGLLASGV----PAKDIIVSDPSP--EKRAA----LAEEY-----GVRAATDNQEAAQEADV   65 (267)
T ss_pred             CCEEEEEe-chHHHHHHHHHHHhCCC----CcceEEEEcCCH--HHHHH----HHHhc-----CCeecCChHHHHhcCCE
Confidence            46899999 79999999999987763    112688898853  33322    11110     12234456667889999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      ||++.
T Consensus        66 Vil~v   70 (267)
T PRK11880         66 VVLAV   70 (267)
T ss_pred             EEEEc
Confidence            99974

>PRK07201 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.0041  Score=63.00  Aligned_cols=148  Identities=14%  Similarity=0.075  Sum_probs=77.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh---
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA---   78 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a---   78 (300)
                      .++++|+||+|.+|..++..|+..|.       +|++++.++  +.++....++......   ...++.-..+..++   
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~  441 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGA-------TVFLVARNG--EALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKD  441 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence            46899999999999999999998875       788998763  3443332233211100   00011101112222   


Q ss_pred             ----cCCCcEEEEeCCCCCCCC--------CcHHHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           79 ----CTGVNIAVMVGGFPRKEG--------MERKDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        79 ----~~~aDvVi~~ag~~~~~g--------~~r~dl~~~N~~i~~~i----~~~i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                          +...|++|+.||......        ++-...+..|+.....+    .+.+++..  ...+|++|+-...      
T Consensus       442 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~------  513 (657)
T PRK07201        442 ILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERR--FGHVVNVSSIGVQ------  513 (657)
T ss_pred             HHHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--CCEEEEECChhhc------
Confidence                236899999998642111        11233456676655444    44444443  2357777653211      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                         .+.|....++.++.-...+...++..+
T Consensus       514 ---~~~~~~~~Y~~sK~a~~~~~~~la~e~  540 (657)
T PRK07201        514 ---TNAPRFSAYVASKAALDAFSDVAASET  540 (657)
T ss_pred             ---CCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence               112211224445544455555566554

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=97.10  E-value=0.0052  Score=53.61  Aligned_cols=117  Identities=17%  Similarity=0.177  Sum_probs=60.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeC-------Chh
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATT-------DAV   76 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~-------~~~   76 (300)
                      .+.|+||+|++|+.++..|+..|.       +++++.... .+.++....++......   ...++.-..       ...
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~-------~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   73 (242)
T TIGR01829         2 IALVTGGMGGIGTAICQRLAKDGY-------RVAANCGPN-EERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVE   73 (242)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHH
Confidence            578999999999999999998774       566666521 22222111112111000   000110000       112


Q ss_pred             hhcCCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHH----HHHHHhhhcCCCeEEEEecCc
Q 022227           77 EACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKA----QASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~----i~~~i~~~~~~~~~viv~sNP  133 (300)
                      +.+...|+||+++|.....   ..+   -.+.+..|......    +.+.+++..  ..+++++|..
T Consensus        74 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~iss~  138 (242)
T TIGR01829        74 AELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERG--WGRIINISSV  138 (242)
T ss_pred             HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEcch
Confidence            2245689999999865321   111   23345667665444    444444443  2357777654

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.09  E-value=0.0049  Score=56.11  Aligned_cols=65  Identities=14%  Similarity=0.257  Sum_probs=47.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||++|| .|.+|+.++..|+..|+       +++.+|+++  ++..   ..+...-      .....+..++.+++|+|
T Consensus         1 ~kIafIG-LG~MG~pmA~~L~~aG~-------~v~v~~r~~--~ka~---~~~~~~G------a~~a~s~~eaa~~aDvV   61 (286)
T COG2084           1 MKIAFIG-LGIMGSPMAANLLKAGH-------EVTVYNRTP--EKAA---ELLAAAG------ATVAASPAEAAAEADVV   61 (286)
T ss_pred             CeEEEEc-CchhhHHHHHHHHHCCC-------EEEEEeCCh--hhhh---HHHHHcC------CcccCCHHHHHHhCCEE
Confidence            4899999 99999999999999986       899999874  3321   1122211      11233567899999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |.+-
T Consensus        62 itmv   65 (286)
T COG2084          62 ITML   65 (286)
T ss_pred             EEec
Confidence            9974

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=97.04  E-value=0.006  Score=54.45  Aligned_cols=160  Identities=14%  Similarity=0.168  Sum_probs=80.0

Q ss_pred             CCCcEEEEEcCC--ChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEeCC---
Q 022227            3 KEPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTD---   74 (300)
Q Consensus         3 ~~~~kV~IiGAa--G~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~~---   74 (300)
                      ++.+.+.||||+  +-||..++..|++.|.       ++++.+.+.+..+.+....++.+...   ....++.-..+   
T Consensus         4 l~~k~~lItGas~~~GIG~aia~~la~~G~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~   76 (258)
T PRK07370          4 LTGKKALVTGIANNRSIAWGIAQQLHAAGA-------ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEE   76 (258)
T ss_pred             cCCcEEEEeCCCCCCchHHHHHHHHHHCCC-------EEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHH
Confidence            455689999975  6899999999998875       67776543211111111111211100   00001100001   


Q ss_pred             ----hhhhcCCCcEEEEeCCCCCC-----C--CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH
Q 022227           75 ----AVEACTGVNIAVMVGGFPRK-----E--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        75 ----~~~a~~~aDvVi~~ag~~~~-----~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                          ..+.+...|++|+.||....     +  ..+.   ...+..|+.....+.+.+...-.+...+|+++.....    
T Consensus        77 ~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~----  152 (258)
T PRK07370         77 TFETIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGV----  152 (258)
T ss_pred             HHHHHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccc----
Confidence                12223468999999987531     1  1122   2334556544433333332211112357777653321    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                           .+.|..-.|+.++--...+.+.++.+++  +..|+
T Consensus       153 -----~~~~~~~~Y~asKaal~~l~~~la~el~--~~gI~  185 (258)
T PRK07370        153 -----RAIPNYNVMGVAKAALEASVRYLAAELG--PKNIR  185 (258)
T ss_pred             -----cCCcccchhhHHHHHHHHHHHHHHHHhC--cCCeE
Confidence                 1223223456666666677888888875  44554

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.04  E-value=0.0035  Score=57.49  Aligned_cols=95  Identities=14%  Similarity=0.121  Sum_probs=55.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+|+| .|.+|+.++..|...|.       +|.++|+++  ++++..    .+.......   ...+..+.++++|+|
T Consensus         1 M~Ig~IG-lG~mG~~la~~L~~~g~-------~V~~~dr~~--~~~~~l----~~~g~~~~~---s~~~~~~~~~~~dvI   63 (298)
T TIGR00872         1 MQLGLIG-LGRMGANIVRRLAKRGH-------DCVGYDHDQ--DAVKAM----KEDRTTGVA---NLRELSQRLSAPRVV   63 (298)
T ss_pred             CEEEEEc-chHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHH----HHcCCcccC---CHHHHHhhcCCCCEE
Confidence            4899999 89999999999998764       788999863  333322    111100000   001223456789999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCc
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                      |++.  |   .           ..++++++.+....+++..+|..||.
T Consensus        64 i~~v--p---~-----------~~~~~v~~~l~~~l~~g~ivid~st~   95 (298)
T TIGR00872        64 WVMV--P---H-----------GIVDAVLEELAPTLEKGDIVIDGGNS   95 (298)
T ss_pred             EEEc--C---c-----------hHHHHHHHHHHhhCCCCCEEEECCCC
Confidence            9973  1   1           12333444444444345567777765

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK08862 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.053  Score=47.53  Aligned_cols=151  Identities=11%  Similarity=-0.004  Sum_probs=79.9

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCC---
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTD---   74 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~---   74 (300)
                      |+++.+.+.|+||++-+|..++..|++.|.       .++++++++  ++++....++......   ...++.-..+   
T Consensus         1 ~~~~~k~~lVtGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~   71 (227)
T PRK08862          1 MDIKSSIILITSAGSVLGRTISCHFARLGA-------TLILCDQDQ--SALKDTYEQCSALTDNVYSFQLKDFSQESIRH   71 (227)
T ss_pred             CCCCCeEEEEECCccHHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHhcCCCeEEEEccCCCHHHHHH
Confidence            667778999999999999999999998875       788888753  4444332222211100   0000000001   


Q ss_pred             ----hhhhcC-CCcEEEEeCCCCCCC----CCcHHH---HHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHH
Q 022227           75 ----AVEACT-GVNIAVMVGGFPRKE----GMERKD---VMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNA  138 (300)
Q Consensus        75 ----~~~a~~-~aDvVi~~ag~~~~~----g~~r~d---l~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~  138 (300)
                          ..+.+. ..|++|+.||....+    ..+..+   .+..|.    ...+...+.+.+... ...+|++|+-..   
T Consensus        72 ~~~~~~~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~-~g~Iv~isS~~~---  147 (227)
T PRK08862         72 LFDAIEQQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNK-KGVIVNVISHDD---  147 (227)
T ss_pred             HHHHHHHHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CceEEEEecCCC---
Confidence                112234 689999998743211    112222   233343    334455566655432 245677764221   


Q ss_pred             HHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       139 ~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                               .|..-.++.++--...+.+.++.++.
T Consensus       148 ---------~~~~~~Y~asKaal~~~~~~la~el~  173 (227)
T PRK08862        148 ---------HQDLTGVESSNALVSGFTHSWAKELT  173 (227)
T ss_pred             ---------CCCcchhHHHHHHHHHHHHHHHHHHh
Confidence                     11111244454445566667777653

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.03  E-value=0.0046  Score=56.36  Aligned_cols=63  Identities=22%  Similarity=0.314  Sum_probs=45.3

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEEE
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAV   86 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvVi   86 (300)
                      ||+||| .|.+|+.++..|+..|+       +|.++|+++  ++++.    +.+..      ....++..+++++||+||
T Consensus         1 ~IgvIG-~G~mG~~iA~~l~~~G~-------~V~~~dr~~--~~~~~----~~~~g------~~~~~~~~~~~~~aDivi   60 (291)
T TIGR01505         1 KVGFIG-LGIMGSPMSINLAKAGY-------QLHVTTIGP--EVADE----LLAAG------AVTAETARQVTEQADVIF   60 (291)
T ss_pred             CEEEEE-ecHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHHH----HHHCC------CcccCCHHHHHhcCCEEE
Confidence            589999 89999999999998764       789999863  33321    11111      112346678899999999


Q ss_pred             EeC
Q 022227           87 MVG   89 (300)
Q Consensus        87 ~~a   89 (300)
                      ++.
T Consensus        61 ~~v   63 (291)
T TIGR01505        61 TMV   63 (291)
T ss_pred             Eec
Confidence            984

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.02  E-value=0.008  Score=54.87  Aligned_cols=64  Identities=19%  Similarity=0.298  Sum_probs=45.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||+|+| .|.+|+.++..|...|.       ++.++|.++  ++++.    +...      .....++..++++++|+|
T Consensus         3 ~~IgviG-~G~mG~~~a~~l~~~g~-------~v~~~d~~~--~~~~~----~~~~------g~~~~~~~~e~~~~~d~v   62 (296)
T PRK11559          3 MKVGFIG-LGIMGKPMSKNLLKAGY-------SLVVYDRNP--EAVAE----VIAA------GAETASTAKAVAEQCDVI   62 (296)
T ss_pred             ceEEEEc-cCHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHHH----HHHC------CCeecCCHHHHHhcCCEE
Confidence            5899999 89999999999988764       688899863  33221    1111      122344667788999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++.
T Consensus        63 i~~v   66 (296)
T PRK11559         63 ITML   66 (296)
T ss_pred             EEeC
Confidence            9984

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.02  E-value=0.0046  Score=56.42  Aligned_cols=77  Identities=22%  Similarity=0.218  Sum_probs=53.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      ..||+|+| +|.+|.++++.|...|. .     +|.++|++  .++++..+.++.+.. +. ..+....+..++++++|+
T Consensus       127 ~k~vlIlG-aGGaaraia~aL~~~G~-~-----~I~I~nR~--~~ka~~la~~l~~~~-~~-~~~~~~~~~~~~~~~aDi  195 (284)
T PRK12549        127 LERVVQLG-AGGAGAAVAHALLTLGV-E-----RLTIFDVD--PARAAALADELNARF-PA-ARATAGSDLAAALAAADG  195 (284)
T ss_pred             CCEEEEEC-CcHHHHHHHHHHHHcCC-C-----EEEEECCC--HHHHHHHHHHHHhhC-CC-eEEEeccchHhhhCCCCE
Confidence            46899999 79999999999998774 2     79999986  467776666664422 11 122222344567899999


Q ss_pred             EEEe--CCCC
Q 022227           85 AVMV--GGFP   92 (300)
Q Consensus        85 Vi~~--ag~~   92 (300)
                      ||.+  +|..
T Consensus       196 VInaTp~Gm~  205 (284)
T PRK12549        196 LVHATPTGMA  205 (284)
T ss_pred             EEECCcCCCC
Confidence            9997  5654

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.01  E-value=0.0047  Score=58.23  Aligned_cols=68  Identities=21%  Similarity=0.266  Sum_probs=44.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||+|+| +|.+|.+++..|...|+       ++.++|.+++...+. ...   ..  ....  ...++..+++++||+|
T Consensus         1 ~~I~iIG-~GliG~siA~~L~~~G~-------~v~i~~~~~~~~~~~-~a~---~~--~~~~--~~~~~~~~~~~~aDlV   64 (359)
T PRK06545          1 RTVLIVG-LGLIGGSLALAIKAAGP-------DVFIIGYDPSAAQLA-RAL---GF--GVID--ELAADLQRAAAEADLI   64 (359)
T ss_pred             CeEEEEE-eCHHHHHHHHHHHhcCC-------CeEEEEeCCCHHHHH-HHh---cC--CCCc--ccccCHHHHhcCCCEE
Confidence            4799999 89999999999998764       567788764322111 111   00  0001  1234667788999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++.
T Consensus        65 ilav   68 (359)
T PRK06545         65 VLAV   68 (359)
T ss_pred             EEeC
Confidence            9984

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.99  E-value=0.0091  Score=53.11  Aligned_cols=155  Identities=15%  Similarity=0.042  Sum_probs=79.4

Q ss_pred             CcEEEEEcCCC-hHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-CCc----ccEEEeCChh--
Q 022227            5 PVRVLVTGAAG-QIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLL----KGVVATTDAV--   76 (300)
Q Consensus         5 ~~kV~IiGAaG-~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-~~~----~~v~~~~~~~--   76 (300)
                      .+++.|+||+| .+|..++..|+..|.       +|++.|.+.  ++++....++..... ...    .++.-..+..  
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~-------~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~   87 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGA-------RVVISDIHE--RRLGETADELAAELGLGRVEAVVCDVTSEAQVDAL   87 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHH
Confidence            46899999887 599999999998875       688888753  334333223322100 000    0110000111  


Q ss_pred             -----hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHH----HHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           77 -----EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQAS----ALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        77 -----~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~----~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                           +.+...|++|++||.....   ..+.   .+.+..|+.....+.+    .+.+... ...+++++.....     
T Consensus        88 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~g~iv~~ss~~~~-----  161 (262)
T PRK07831         88 IDAAVERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGH-GGVIVNNASVLGW-----  161 (262)
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEeCchhhc-----
Confidence                 1124679999999864311   1111   2334556555444444    3333321 2345555442211     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                          ...+....++.++.-...+.+.+|.++.  +..|+
T Consensus       162 ----~~~~~~~~Y~~sKaal~~~~~~la~e~~--~~gI~  194 (262)
T PRK07831        162 ----RAQHGQAHYAAAKAGVMALTRCSALEAA--EYGVR  194 (262)
T ss_pred             ----CCCCCCcchHHHHHHHHHHHHHHHHHhC--ccCeE
Confidence                1122223456666666677777777654  34454

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=96.97  E-value=0.0083  Score=52.40  Aligned_cols=118  Identities=16%  Similarity=0.139  Sum_probs=62.7

Q ss_pred             EEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh-------h
Q 022227            8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV-------E   77 (300)
Q Consensus         8 V~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~-------~   77 (300)
                      |.|+||+|++|.+++..|++.|.       ++++++... .++++....++.+....   ...++.-..+..       +
T Consensus         1 vlItGas~giG~~~a~~l~~~G~-------~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   72 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGF-------EICVHYHSG-RSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIA   72 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            57999999999999999998875       677776542 23333222223221100   000110000111       1


Q ss_pred             hcCCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEecCch
Q 022227           78 ACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPA  134 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~----~~~~~~~~viv~sNP~  134 (300)
                      .+...|.+|+.+|......   .+   -...+..|+.....+.+.+.    +..+ ...+|++|+..
T Consensus        73 ~~~~i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~iv~vsS~~  138 (239)
T TIGR01831        73 EHGAYYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQ-GGRIITLASVS  138 (239)
T ss_pred             HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC-CeEEEEEcchh
Confidence            2335699999998653221   12   23456677776666655431    2122 34677777644

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.96  E-value=0.0031  Score=51.49  Aligned_cols=120  Identities=14%  Similarity=0.271  Sum_probs=67.9

Q ss_pred             EEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhh---hhhhhhc-cCCcccEEEeCChhhhcCCCc
Q 022227            8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK---MELVDAA-FPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         8 V~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~---~dl~~~~-~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      |+|+| +|.+|..++..|.+.+.       ++.|++..+   .++...   ..+.+.. ..............+..+.+|
T Consensus         1 I~I~G-~GaiG~~~a~~L~~~g~-------~V~l~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   69 (151)
T PF02558_consen    1 ILIIG-AGAIGSLYAARLAQAGH-------DVTLVSRSP---RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYD   69 (151)
T ss_dssp             EEEES-TSHHHHHHHHHHHHTTC-------EEEEEESHH---HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTES
T ss_pred             CEEEC-cCHHHHHHHHHHHHCCC-------ceEEEEccc---cHHhhhheeEEEEecccceecccccccCcchhccCCCc
Confidence            78999 79999999999988664       799998752   222111   1111111 000111112222225678999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-Eeeeh
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTR  158 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~  158 (300)
                      +||++.-..                -..+.++.++.+..++..++.+-|=....-.+ .+.   +|+.++ .+.+.
T Consensus        70 ~viv~vKa~----------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l-~~~---~~~~~v~~g~~~  125 (151)
T PF02558_consen   70 LVIVAVKAY----------------QLEQALQSLKPYLDPNTTIVSLQNGMGNEEVL-AEY---FPRPRVLGGVTT  125 (151)
T ss_dssp             EEEE-SSGG----------------GHHHHHHHHCTGEETTEEEEEESSSSSHHHHH-HCH---STGSGEEEEEEE
T ss_pred             EEEEEeccc----------------chHHHHHHHhhccCCCcEEEEEeCCCCcHHHH-HHH---cCCCcEEEEEEe
Confidence            999984111                11346666777776677788888877654333 333   354564 44444

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK08017 oxidoreductase; Provisional

Probab=96.95  E-value=0.0066  Score=53.57  Aligned_cols=33  Identities=21%  Similarity=0.163  Sum_probs=28.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      ++|.|+||+|++|.+++..|++.|.       ++++++.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~-------~v~~~~r~   35 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY-------RVLAACRK   35 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCC
Confidence            4799999999999999999998764       67888775

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.95  E-value=0.019  Score=51.22  Aligned_cols=154  Identities=12%  Similarity=0.090  Sum_probs=78.7

Q ss_pred             CCcEEEEEcCC--ChHHHHHHHHHHhcccCCCCCCeEEEEEecCC-chhhhhhhhhhhhhhcc-CCcccEEEeC------
Q 022227            4 EPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPP-AAEALNGVKMELVDAAF-PLLKGVVATT------   73 (300)
Q Consensus         4 ~~~kV~IiGAa--G~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~-~~~~l~g~~~dl~~~~~-~~~~~v~~~~------   73 (300)
                      +.+.++||||+  +-||..++..|++.|.       ++++.+++. +.+.++....++..... ....++.-..      
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-------~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~   78 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-------KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACF   78 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-------EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHH
Confidence            45689999976  7899999999998875       678876532 12223222222210000 0000110000      


Q ss_pred             -ChhhhcCCCcEEEEeCCCCCC-----C--CCcHHH---HHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           74 -DAVEACTGVNIAVMVGGFPRK-----E--GMERKD---VMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        74 -~~~~a~~~aDvVi~~ag~~~~-----~--g~~r~d---l~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                       ...+.+...|++|+.||....     +  ..+..+   .+..|......+.+.+...-.+...+|++|+-...      
T Consensus        79 ~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~------  152 (257)
T PRK08594         79 ETIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGE------  152 (257)
T ss_pred             HHHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCc------
Confidence             112224558999999986421     1  122222   24455554444443333321123467777753321      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                         ...|..-.|+.++.-...+.+.+|.++.
T Consensus       153 ---~~~~~~~~Y~asKaal~~l~~~la~el~  180 (257)
T PRK08594        153 ---RVVQNYNVMGVAKASLEASVKYLANDLG  180 (257)
T ss_pred             ---cCCCCCchhHHHHHHHHHHHHHHHHHhh
Confidence               1122222456666666777777887774

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.94  E-value=0.015  Score=52.99  Aligned_cols=68  Identities=16%  Similarity=0.357  Sum_probs=44.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh-hhhhhhhhhccCCcccEEEeCC-hhhhcCCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN-GVKMELVDAAFPLLKGVVATTD-AVEACTGV   82 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~-g~~~dl~~~~~~~~~~v~~~~~-~~~a~~~a   82 (300)
                      .++|+|+| .|.+|.+++..|...|+       .+..++.+.+.+.++ +..+++.+..         +.+ ..++.++|
T Consensus         3 ~~~v~IvG-~GliG~s~a~~l~~~g~-------~v~i~g~d~~~~~~~~a~~lgv~d~~---------~~~~~~~~~~~a   65 (279)
T COG0287           3 SMKVGIVG-LGLMGGSLARALKEAGL-------VVRIIGRDRSAATLKAALELGVIDEL---------TVAGLAEAAAEA   65 (279)
T ss_pred             CcEEEEEC-CchHHHHHHHHHHHcCC-------eEEEEeecCcHHHHHHHhhcCccccc---------ccchhhhhcccC
Confidence            46899999 89999999999998876       455666654332222 2223333321         122 26778899


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |+||++.
T Consensus        66 D~Vivav   72 (279)
T COG0287          66 DLVIVAV   72 (279)
T ss_pred             CEEEEec
Confidence            9999973

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=96.93  E-value=0.0054  Score=56.24  Aligned_cols=64  Identities=22%  Similarity=0.456  Sum_probs=46.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||+|+| .|.+|..++..|+..|.       ++.++|+++  ++++.    +...      .....++..++++++|+|
T Consensus         2 ~~Ig~IG-lG~mG~~mA~~l~~~G~-------~V~v~d~~~--~~~~~----~~~~------g~~~~~s~~~~~~~aDvV   61 (296)
T PRK15461          2 AAIAFIG-LGQMGSPMASNLLKQGH-------QLQVFDVNP--QAVDA----LVDK------GATPAASPAQAAAGAEFV   61 (296)
T ss_pred             CeEEEEe-eCHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHHH----HHHc------CCcccCCHHHHHhcCCEE
Confidence            4899999 89999999999998764       789999864  33332    2111      112334667889999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++.
T Consensus        62 i~~v   65 (296)
T PRK15461         62 ITML   65 (296)
T ss_pred             EEec
Confidence            9874

>PRK07677 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.03  Score=49.46  Aligned_cols=149  Identities=10%  Similarity=0.028  Sum_probs=79.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh-----
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE-----   77 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~-----   77 (300)
                      +++.|+||+|.+|.+++..|++.|.       .|++.|.+.  ++++....++......   ...++.-..+..+     
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   72 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA-------NVVITGRTK--EKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQI   72 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence            5789999999999999999998875       688888763  3333333233211100   0001100001111     


Q ss_pred             --hcCCCcEEEEeCCCCCC-C--CCcH---HHHHHhhHHHHHHHHHHHhh----hcCCCeEEEEecCchhhHHHHHHHHC
Q 022227           78 --ACTGVNIAVMVGGFPRK-E--GMER---KDVMSKNVSIYKAQASALEQ----HAAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        78 --a~~~aDvVi~~ag~~~~-~--g~~r---~dl~~~N~~i~~~i~~~i~~----~~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                        .+...|++|+.+|.... +  ..+.   ...+..|......+.+.+.+    ... ...++++|.-..       .. 
T Consensus        73 ~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~g~ii~isS~~~-------~~-  143 (252)
T PRK07677         73 DEKFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGI-KGNIINMVATYA-------WD-  143 (252)
T ss_pred             HHHhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCC-CEEEEEEcChhh-------cc-
Confidence              23467999999885321 1  2222   23466676655555555533    222 245676664321       00 


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      + .+..-.++.++.....+.+.+|+.+.
T Consensus       144 ~-~~~~~~Y~~sKaa~~~~~~~la~e~~  170 (252)
T PRK07677        144 A-GPGVIHSAAAKAGVLAMTRTLAVEWG  170 (252)
T ss_pred             C-CCCCcchHHHHHHHHHHHHHHHHHhC
Confidence            1 11111345555555667777777764

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=96.91  E-value=0.0014  Score=52.41  Aligned_cols=101  Identities=16%  Similarity=0.161  Sum_probs=53.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .+||.||| +|.+|.+++..|.+.|+       +|.-+-.. +.+..+    .+...    .....+ .++.+.++++|+
T Consensus        10 ~l~I~iIG-aGrVG~~La~aL~~ag~-------~v~~v~sr-s~~sa~----~a~~~----~~~~~~-~~~~~~~~~aDl   71 (127)
T PF10727_consen   10 RLKIGIIG-AGRVGTALARALARAGH-------EVVGVYSR-SPASAE----RAAAF----IGAGAI-LDLEEILRDADL   71 (127)
T ss_dssp             --EEEEEC-TSCCCCHHHHHHHHTTS-------EEEEESSC-HH-HHH----HHHC------TT------TTGGGCC-SE
T ss_pred             ccEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEEeC-Cccccc----ccccc----cccccc-cccccccccCCE
Confidence            58999999 79999999999998774       45444322 111111    11111    111112 245678899999


Q ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhh--cCCCeEEEEecC---chhhHHHH
Q 022227           85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH--AAPNCKVLVVAN---PANTNALI  140 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~--~~~~~~viv~sN---P~~~~~~~  140 (300)
                      +|++.     ++           ..+.++++.+..+  -.++ ++++-++   +++++..+
T Consensus        72 v~iav-----pD-----------daI~~va~~La~~~~~~~g-~iVvHtSGa~~~~vL~p~  115 (127)
T PF10727_consen   72 VFIAV-----PD-----------DAIAEVAEQLAQYGAWRPG-QIVVHTSGALGSDVLAPA  115 (127)
T ss_dssp             EEE-S------C-----------CHHHHHHHHHHCC--S-TT--EEEES-SS--GGGGHHH
T ss_pred             EEEEe-----ch-----------HHHHHHHHHHHHhccCCCC-cEEEECCCCChHHhhhhH
Confidence            99984     22           1234677777765  2234 4666654   35566554

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=96.91  E-value=0.015  Score=56.87  Aligned_cols=100  Identities=12%  Similarity=-0.024  Sum_probs=61.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC---CC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT---GV   82 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~---~a   82 (300)
                      .+|+|+| .|.+|++++..|+..|.       +|.++|+++  ++.+.    +.+........+....++.+.++   ++
T Consensus         2 ~~IgvIG-LG~MG~~lA~nL~~~G~-------~V~v~dr~~--~~~~~----l~~~~~~~g~~i~~~~s~~e~v~~l~~~   67 (470)
T PTZ00142          2 SDIGLIG-LAVMGQNLALNIASRGF-------KISVYNRTY--EKTEE----FVKKAKEGNTRVKGYHTLEELVNSLKKP   67 (470)
T ss_pred             CEEEEEe-EhHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHH----HHHhhhhcCCcceecCCHHHHHhcCCCC
Confidence            4899999 89999999999998875       799999864  43332    22110000112334556666665   58


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                      |+||++.-.               .+.++++++.+..+-.++.++|..+|..
T Consensus        68 d~Iil~v~~---------------~~~v~~vi~~l~~~L~~g~iIID~gn~~  104 (470)
T PTZ00142         68 RKVILLIKA---------------GEAVDETIDNLLPLLEKGDIIIDGGNEW  104 (470)
T ss_pred             CEEEEEeCC---------------hHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            988887411               1233344444444433455678888753

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.90  E-value=0.011  Score=53.00  Aligned_cols=159  Identities=19%  Similarity=0.191  Sum_probs=80.8

Q ss_pred             CCC-CCcEEEEEcCCC--hHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEeCC
Q 022227            1 MAK-EPVRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTD   74 (300)
Q Consensus         1 m~~-~~~kV~IiGAaG--~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~~   74 (300)
                      |.+ +.+.+.||||++  -||..++..|++.|.       .|++.+.+.   +++....++.....   ....++.-..+
T Consensus         1 ~~~l~~k~~lITGas~~~GIG~aia~~la~~G~-------~vil~~r~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~   70 (262)
T PRK07984          1 MGFLSGKRILVTGVASKLSIAYGIAQAMHREGA-------ELAFTYQND---KLKGRVEEFAAQLGSDIVLPCDVAEDAS   70 (262)
T ss_pred             CcccCCCEEEEeCCCCCccHHHHHHHHHHHCCC-------EEEEEecch---hHHHHHHHHHhccCCceEeecCCCCHHH
Confidence            443 346789999764  799999999998875       688887642   22212222221100   00011110001


Q ss_pred             h-------hhhcCCCcEEEEeCCCCCCC--------CCcHH---HHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh
Q 022227           75 A-------VEACTGVNIAVMVGGFPRKE--------GMERK---DVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT  136 (300)
Q Consensus        75 ~-------~~a~~~aDvVi~~ag~~~~~--------g~~r~---dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~  136 (300)
                      .       .+.+...|++|+.||.....        ..+..   ..+..|+.....+.+.+...-.++..++++|+-...
T Consensus        71 v~~~~~~~~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~  150 (262)
T PRK07984         71 IDAMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE  150 (262)
T ss_pred             HHHHHHHHHhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCC
Confidence            1       11234579999999864211        11222   234556654444444433221122456776643210


Q ss_pred             HHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       137 ~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                               ...|....|+.++--...+.+.+|.++.  +.+|+
T Consensus       151 ---------~~~~~~~~Y~asKaal~~l~~~la~el~--~~gIr  183 (262)
T PRK07984        151 ---------RAIPNYNVMGLAKASLEANVRYMANAMG--PEGVR  183 (262)
T ss_pred             ---------CCCCCcchhHHHHHHHHHHHHHHHHHhc--ccCcE
Confidence                     1123222456666666777888888764  34455

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.89  E-value=0.0096  Score=52.87  Aligned_cols=154  Identities=14%  Similarity=0.131  Sum_probs=77.6

Q ss_pred             CCC--CCcEEEEEcCC--ChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-CCcccEEEeCC-
Q 022227            1 MAK--EPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTD-   74 (300)
Q Consensus         1 m~~--~~~kV~IiGAa--G~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-~~~~~v~~~~~-   74 (300)
                      |++  +.+.+.||||+  +-||..++..|++.|.       +|++.+.++   ++.....++..... ....++.-..+ 
T Consensus         1 ~~~~l~~k~~lItGas~~~gIG~a~a~~la~~G~-------~Vi~~~r~~---~~~~~~~~~~~~~~~~~~~Dl~~~~~v   70 (252)
T PRK06079          1 MSGILSGKKIVVMGVANKRSIAWGCAQAIKDQGA-------TVIYTYQND---RMKKSLQKLVDEEDLLVECDVASDESI   70 (252)
T ss_pred             CccccCCCEEEEeCCCCCCchHHHHHHHHHHCCC-------EEEEecCch---HHHHHHHhhccCceeEEeCCCCCHHHH
Confidence            554  45689999987  6899999999998875       688887652   22211111111000 00011110001 


Q ss_pred             ------hhhhcCCCcEEEEeCCCCCC-----C--CCcHH---HHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH
Q 022227           75 ------AVEACTGVNIAVMVGGFPRK-----E--GMERK---DVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA  138 (300)
Q Consensus        75 ------~~~a~~~aDvVi~~ag~~~~-----~--g~~r~---dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~  138 (300)
                            ..+.+...|++|+.||....     +  ..+..   ..+..|+.....+.+.+.+.-.+...+++++.-...  
T Consensus        71 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~--  148 (252)
T PRK06079         71 ERAFATIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSE--  148 (252)
T ss_pred             HHHHHHHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCcc--
Confidence                  11223457999999987431     1  12222   234456544444443333321122356676642210  


Q ss_pred             HHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       139 ~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                             ...|....++.++--...+.+.+|.++.
T Consensus       149 -------~~~~~~~~Y~asKaal~~l~~~la~el~  176 (252)
T PRK06079        149 -------RAIPNYNVMGIAKAALESSVRYLARDLG  176 (252)
T ss_pred             -------ccCCcchhhHHHHHHHHHHHHHHHHHhh
Confidence                   1122222355566666677777777764

>PRK07791 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.0098  Score=53.99  Aligned_cols=35  Identities=34%  Similarity=0.304  Sum_probs=29.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      +.+.+.||||++.||..++..|+..|.       .+++.|.+
T Consensus         5 ~~k~~lITGas~GIG~aia~~la~~G~-------~vii~~~~   39 (286)
T PRK07791          5 DGRVVIVTGAGGGIGRAHALAFAAEGA-------RVVVNDIG   39 (286)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEeeCC
Confidence            456899999999999999999998774       67888764

>PRK05599 hypothetical protein; Provisional

Probab=96.88  E-value=0.036  Score=48.95  Aligned_cols=153  Identities=14%  Similarity=0.193  Sum_probs=82.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC----CcccEEEeC-------C
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----LLKGVVATT-------D   74 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~----~~~~v~~~~-------~   74 (300)
                      |.+.|+||++.+|..++..|.+ |.       .+++.+.++  ++++....++......    ...++.-..       .
T Consensus         1 ~~vlItGas~GIG~aia~~l~~-g~-------~Vil~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~   70 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLCH-GE-------DVVLAARRP--EAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQ   70 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHhC-CC-------EEEEEeCCH--HHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHH
Confidence            3689999999999999999884 53       688888753  5555444444322100    000110000       1


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           75 AVEACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                      ..+.+...|++|+.||......   .+.   .+....|..    ..+.+.+.+.+... +..+|++|+-...        
T Consensus        71 ~~~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~-~g~Iv~isS~~~~--------  141 (246)
T PRK05599         71 TQELAGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTA-PAAIVAFSSIAGW--------  141 (246)
T ss_pred             HHHhcCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-CCEEEEEeccccc--------
Confidence            1222346899999998753211   111   123333433    33444565654432 2467777764431        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                       .+.|..-.|+.++--...+.+.++++++  ..+|+
T Consensus       142 -~~~~~~~~Y~asKaa~~~~~~~la~el~--~~~I~  174 (246)
T PRK05599        142 -RARRANYVYGSTKAGLDAFCQGLADSLH--GSHVR  174 (246)
T ss_pred             -cCCcCCcchhhHHHHHHHHHHHHHHHhc--CCCce
Confidence             1122223466677666677778888774  33454

>PRK06940 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.0049  Score=55.60  Aligned_cols=116  Identities=19%  Similarity=0.185  Sum_probs=62.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh-----
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-----   78 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a-----   78 (300)
                      .+.|+| +|.+|.+++..|. .|.       +|++.|+++  ++++....++......   ...++.-..+..++     
T Consensus         4 ~~lItG-a~gIG~~la~~l~-~G~-------~Vv~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~   72 (275)
T PRK06940          4 VVVVIG-AGGIGQAIARRVG-AGK-------KVLLADYNE--ENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQ   72 (275)
T ss_pred             EEEEEC-CChHHHHHHHHHh-CCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH
Confidence            567788 5899999999986 553       789998853  3333222223211000   00011000011111     


Q ss_pred             -cCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           79 -CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        79 -~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                       +...|++|+.||... ...+-.+.+..|+.....+.+.+.+.-.++..++++++.+
T Consensus        73 ~~g~id~li~nAG~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~  128 (275)
T PRK06940         73 TLGPVTGLVHTAGVSP-SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQS  128 (275)
T ss_pred             hcCCCCEEEECCCcCC-chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecc
Confidence             246899999999753 2223455677887776666666554311122345555443

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=96.85  E-value=0.011  Score=48.44  Aligned_cols=121  Identities=19%  Similarity=0.185  Sum_probs=69.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEe-------CChh
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVAT-------TDAV   76 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~-------~~~~   76 (300)
                      .++|+||++.+|..++..|++.|-      ..+++++.+++.+.++....++.....   ....++.-.       ....
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~------~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~   75 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGA------RVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVI   75 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTT------EEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCc------eEEEEeeecccccccccccccccccccccccccccccccccccccccccc
Confidence            588999999999999999998742      167888775222333333233331110   000000000       0112


Q ss_pred             hhcCCCcEEEEeCCCCCCCCC---cH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           77 EACTGVNIAVMVGGFPRKEGM---ER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~g~---~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      +.....|++|+++|.......   +.   .+.+..|+.....+.+.+.. .. ...++++|....
T Consensus        76 ~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~-~g~iv~~sS~~~  138 (167)
T PF00106_consen   76 KRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-QG-GGKIVNISSIAG  138 (167)
T ss_dssp             HHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-HT-TEEEEEEEEGGG
T ss_pred             cccccccccccccccccccccccccchhhhhccccccceeeeeeehhee-cc-ccceEEecchhh
Confidence            234578999999998652211   11   24566777777777777776 33 457888876554

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.85  E-value=0.0085  Score=55.88  Aligned_cols=62  Identities=19%  Similarity=0.185  Sum_probs=45.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..++|+|+| .|.+|+.++..|...|.       +|..+|..+.  ...    +.   .       ....++.+++++||
T Consensus       145 ~g~~VgIIG-~G~IG~~vA~~L~~~G~-------~V~~~d~~~~--~~~----~~---~-------~~~~~l~ell~~aD  200 (330)
T PRK12480        145 KNMTVAIIG-TGRIGAATAKIYAGFGA-------TITAYDAYPN--KDL----DF---L-------TYKDSVKEAIKDAD  200 (330)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEeCChh--Hhh----hh---h-------hccCCHHHHHhcCC
Confidence            346999999 89999999999886554       7999998631  110    11   0       12346788999999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +|+++.
T Consensus       201 iVil~l  206 (330)
T PRK12480        201 IISLHV  206 (330)
T ss_pred             EEEEeC
Confidence            999874

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=96.83  E-value=0.027  Score=51.96  Aligned_cols=106  Identities=25%  Similarity=0.421  Sum_probs=63.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhccc-CCCCCCeEEEEEecCCchhhhhh---hhhhhh---hhc---cC---CcccE
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVM-LGTDQPVILHMLDIPPAAEALNG---VKMELV---DAA---FP---LLKGV   69 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~-~~~~~~~~l~L~D~~~~~~~l~g---~~~dl~---~~~---~~---~~~~v   69 (300)
                      +.+.||+|+| +|+=|++++..+...-. +. ....+|++.-..   +...+   ...|+-   |..   .|   +..++
T Consensus        19 ~~~~kV~ivG-sGnWGsaiaki~~~n~~~~~-~f~~~Vrmwv~e---e~i~~~~~~L~eiIN~~heN~KYlpg~~lP~Nv   93 (372)
T KOG2711|consen   19 RDPLKVCIVG-SGNWGSAIAKIVGENVKEFP-IFDPQVRMWVFE---EEINGEAEKLTEIINSRHENVKYLPGIKLPENV   93 (372)
T ss_pred             cCceEEEEEc-cChHHHHHHHHHhhhhhhcc-ccCceeeEEEec---cccCChhHHHHHHhccccccccccCCccCCCCe
Confidence            4568999999 89999999987764311 11 011134443321   22222   112221   111   12   34678


Q ss_pred             EEeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEE
Q 022227           70 VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLV  129 (300)
Q Consensus        70 ~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv  129 (300)
                      ...+|+.++++|||++|+.-  |.              ..+.++++.|..+-+|++..|-
T Consensus        94 vAv~dl~ea~~dADilvf~v--Ph--------------Qf~~~ic~~l~g~vk~~~~aIS  137 (372)
T KOG2711|consen   94 VAVPDLVEAAKDADILVFVV--PH--------------QFIPRICEQLKGYVKPGATAIS  137 (372)
T ss_pred             EecchHHHHhccCCEEEEeC--Ch--------------hhHHHHHHHHhcccCCCCeEEE
Confidence            88999999999999999972  31              3345677777777666654443

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.81  E-value=0.0044  Score=54.58  Aligned_cols=33  Identities=15%  Similarity=0.409  Sum_probs=29.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      |+++|+| +|.+|++++..|...|.       +++++|.++
T Consensus         1 m~iiIiG-~G~vG~~va~~L~~~g~-------~Vv~Id~d~   33 (225)
T COG0569           1 MKIIIIG-AGRVGRSVARELSEEGH-------NVVLIDRDE   33 (225)
T ss_pred             CEEEEEC-CcHHHHHHHHHHHhCCC-------ceEEEEcCH
Confidence            5899999 79999999999998874       799999974

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.78  E-value=0.016  Score=52.51  Aligned_cols=66  Identities=12%  Similarity=0.118  Sum_probs=41.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+|+| .|.+|.+++..|...|..     .++..+|.++  ++++.    +.+...     +....+..+ +.++|+|
T Consensus         1 m~I~iIG-~G~mG~sla~~l~~~g~~-----~~v~~~d~~~--~~~~~----~~~~g~-----~~~~~~~~~-~~~aD~V   62 (275)
T PRK08507          1 MKIGIIG-LGLMGGSLGLALKEKGLI-----SKVYGYDHNE--LHLKK----ALELGL-----VDEIVSFEE-LKKCDVI   62 (275)
T ss_pred             CEEEEEc-cCHHHHHHHHHHHhcCCC-----CEEEEEcCCH--HHHHH----HHHCCC-----CcccCCHHH-HhcCCEE
Confidence            4899999 799999999999887641     2688888863  33221    111110     001123444 4569999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++.
T Consensus        63 ilav   66 (275)
T PRK08507         63 FLAI   66 (275)
T ss_pred             EEeC
Confidence            9984

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.77  E-value=0.016  Score=52.27  Aligned_cols=157  Identities=15%  Similarity=0.143  Sum_probs=82.3

Q ss_pred             CcEEEEEcCC--ChHHHHHHHHHHhcccCCCCCCeEEEEEecCC-chhhhhhhhhhhhhhccCCcccEEEeCC-------
Q 022227            5 PVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPP-AAEALNGVKMELVDAAFPLLKGVVATTD-------   74 (300)
Q Consensus         5 ~~kV~IiGAa--G~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~-~~~~l~g~~~dl~~~~~~~~~~v~~~~~-------   74 (300)
                      .+++.|+||+  +-||..++..|+..|.       .|++.+.++ ..++++....++.... ....++.-..+       
T Consensus        10 ~k~~lItGas~~~GIG~aia~~la~~G~-------~V~l~~r~~~~~~~~~~l~~~~~~~~-~~~~Dl~~~~~v~~~~~~   81 (272)
T PRK08159         10 GKRGLILGVANNRSIAWGIAKACRAAGA-------ELAFTYQGDALKKRVEPLAAELGAFV-AGHCDVTDEASIDAVFET   81 (272)
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC-------EEEEEcCchHHHHHHHHHHHhcCCce-EEecCCCCHHHHHHHHHH
Confidence            4579999976  6899999999998875       677776532 1122221111111000 00001100001       


Q ss_pred             hhhhcCCCcEEEEeCCCCCC-----C--CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           75 AVEACTGVNIAVMVGGFPRK-----E--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~-----~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                      ..+.+...|++|+.||....     +  ..+.   ...+..|+.....+.+.+.+.-.++..+|+++.....        
T Consensus        82 ~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~--------  153 (272)
T PRK08159         82 LEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAE--------  153 (272)
T ss_pred             HHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccc--------
Confidence            12224468999999987531     1  1222   2345667655555555444332223456666643210        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                       ...|....|+.++--...+.+.++.++.  +..|+
T Consensus       154 -~~~p~~~~Y~asKaal~~l~~~la~el~--~~gIr  186 (272)
T PRK08159        154 -KVMPHYNVMGVAKAALEASVKYLAVDLG--PKNIR  186 (272)
T ss_pred             -cCCCcchhhhhHHHHHHHHHHHHHHHhc--ccCeE
Confidence             1233233466777777777778888775  33444

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.77  E-value=0.015  Score=52.35  Aligned_cols=156  Identities=14%  Similarity=0.153  Sum_probs=80.2

Q ss_pred             CCcEEEEEcCCC--hHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc---cCCcccEEEeCC----
Q 022227            4 EPVRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA---FPLLKGVVATTD----   74 (300)
Q Consensus         4 ~~~kV~IiGAaG--~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~---~~~~~~v~~~~~----   74 (300)
                      +.+.+.||||++  -||..++..|+..|.       .|++.+.++  +..+ ...++.+..   .....++.-..+    
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-------~V~~~~r~~--~~~~-~~~~~~~~~g~~~~~~~Dv~d~~~v~~~   75 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-------ELAFTYQGE--ALGK-RVKPLAESLGSDFVLPCDVEDIASVDAV   75 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-------EEEEecCch--HHHH-HHHHHHHhcCCceEEeCCCCCHHHHHHH
Confidence            446799999875  799999999998875       688887642  1111 111121100   000001110001    


Q ss_pred             ---hhhhcCCCcEEEEeCCCCCC-----C--CCcHH---HHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           75 ---AVEACTGVNIAVMVGGFPRK-----E--GMERK---DVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        75 ---~~~a~~~aDvVi~~ag~~~~-----~--g~~r~---dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                         ..+.+...|++|+.||....     +  ..+..   ..+..|......+.+.+..+=.+...+|++|+....     
T Consensus        76 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~-----  150 (271)
T PRK06505         76 FEALEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGST-----  150 (271)
T ss_pred             HHHHHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCcc-----
Confidence               11224568999999987532     1  12222   234556554444443332211112356777653321     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                          ...|....|+.++--...+.+.+|.++.  +..|+
T Consensus       151 ----~~~~~~~~Y~asKaAl~~l~r~la~el~--~~gIr  183 (271)
T PRK06505        151 ----RVMPNYNVMGVAKAALEASVRYLAADYG--PQGIR  183 (271)
T ss_pred             ----ccCCccchhhhhHHHHHHHHHHHHHHHh--hcCeE
Confidence                1123223466677766777888888874  34444

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.72  E-value=0.011  Score=56.18  Aligned_cols=53  Identities=15%  Similarity=0.253  Sum_probs=42.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .+||+|+||+|.+|.+++..|...|.       ++.++|.+.           .              ++..+++++||+
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~-------~V~~~d~~~-----------~--------------~~~~~~~~~aDl  145 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGY-------QVRILEQDD-----------W--------------DRAEDILADAGM  145 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCC-------eEEEeCCCc-----------c--------------hhHHHHHhcCCE
Confidence            37899999889999999999998774       789998741           0              133566889999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      ||++.
T Consensus       146 Vilav  150 (374)
T PRK11199        146 VIVSV  150 (374)
T ss_pred             EEEeC
Confidence            99984

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.71  E-value=0.0087  Score=48.30  Aligned_cols=76  Identities=20%  Similarity=0.153  Sum_probs=51.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +..+|+|+| +|-+|..+++.|...|.-      +|.+++++  .++++..+..+...    ...+...++..+.+.++|
T Consensus        11 ~~~~vlviG-aGg~ar~v~~~L~~~g~~------~i~i~nRt--~~ra~~l~~~~~~~----~~~~~~~~~~~~~~~~~D   77 (135)
T PF01488_consen   11 KGKRVLVIG-AGGAARAVAAALAALGAK------EITIVNRT--PERAEALAEEFGGV----NIEAIPLEDLEEALQEAD   77 (135)
T ss_dssp             TTSEEEEES-SSHHHHHHHHHHHHTTSS------EEEEEESS--HHHHHHHHHHHTGC----SEEEEEGGGHCHHHHTES
T ss_pred             CCCEEEEEC-CHHHHHHHHHHHHHcCCC------EEEEEECC--HHHHHHHHHHcCcc----ccceeeHHHHHHHHhhCC
Confidence            457999999 699999999999988752      69999885  45665444444111    011222345667788999


Q ss_pred             EEEEeCCCC
Q 022227           84 IAVMVGGFP   92 (300)
Q Consensus        84 vVi~~ag~~   92 (300)
                      +||.+-+.+
T Consensus        78 ivI~aT~~~   86 (135)
T PF01488_consen   78 IVINATPSG   86 (135)
T ss_dssp             EEEE-SSTT
T ss_pred             eEEEecCCC
Confidence            999985544

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.70  E-value=0.0065  Score=56.88  Aligned_cols=77  Identities=18%  Similarity=0.424  Sum_probs=49.0

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      |+.+++||+|+||+|.+|..++..|.....|..   .++.++....+    .|+...+..      ..+.+..-..++++
T Consensus         1 ~~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v---~~l~~~aS~~s----aGk~~~~~~------~~l~v~~~~~~~~~   67 (347)
T PRK06728          1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNI---AEVTLLSSKRS----AGKTVQFKG------REIIIQEAKINSFE   67 (347)
T ss_pred             CCCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCc---ccEEEEECccc----CCCCeeeCC------cceEEEeCCHHHhc
Confidence            777889999999999999999988885433320   14777765422    223222211      12333322345678


Q ss_pred             CCcEEEEeCC
Q 022227           81 GVNIAVMVGG   90 (300)
Q Consensus        81 ~aDvVi~~ag   90 (300)
                      ++|+||++++
T Consensus        68 ~~Divf~a~~   77 (347)
T PRK06728         68 GVDIAFFSAG   77 (347)
T ss_pred             CCCEEEECCC
Confidence            9999999764

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.70  E-value=0.018  Score=45.73  Aligned_cols=73  Identities=26%  Similarity=0.265  Sum_probs=44.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEE-EEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVIL-HMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l-~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      +||+|+|++|.+|+.++..+.+..-      .+| ..+|.+++  ...|  .|+.+........+.+++++.+.++.+|+
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~------~~lv~~v~~~~~--~~~g--~d~g~~~~~~~~~~~v~~~l~~~~~~~DV   70 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPG------FELVGAVDRKPS--AKVG--KDVGELAGIGPLGVPVTDDLEELLEEADV   70 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTT------EEEEEEEETTTS--TTTT--SBCHHHCTSST-SSBEBS-HHHHTTH-SE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCC------cEEEEEEecCCc--cccc--chhhhhhCcCCcccccchhHHHhcccCCE
Confidence            5999999779999999999987421      143 45566531  1222  23333221113345566788888888998


Q ss_pred             EEEe
Q 022227           85 AVMV   88 (300)
Q Consensus        85 Vi~~   88 (300)
                      ||-.
T Consensus        71 vIDf   74 (124)
T PF01113_consen   71 VIDF   74 (124)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            8775

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=96.70  E-value=0.0083  Score=66.00  Aligned_cols=175  Identities=11%  Similarity=0.069  Sum_probs=89.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchh-hhhhhhhhhhhhc--cC-CcccEEE-eC------
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE-ALNGVKMELVDAA--FP-LLKGVVA-TT------   73 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~-~l~g~~~dl~~~~--~~-~~~~v~~-~~------   73 (300)
                      +++|.||||+||+|++++..|+..+-   ....+++.+....+.. ..+.....+.+..  .. ...+++. ..      
T Consensus       971 ~~~VlvTGatGflG~~l~~~Ll~~~~---~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~ 1047 (1389)
T TIGR03443       971 PITVFLTGATGFLGSFILRDLLTRRS---NSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEK 1047 (1389)
T ss_pred             CceEEEeCCccccHHHHHHHHHhcCC---CCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCcc
Confidence            47899999999999999999987641   0112455554432111 1110000000000  00 0001111 11      


Q ss_pred             ------ChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH---------
Q 022227           74 ------DAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA---------  138 (300)
Q Consensus        74 ------~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~---------  138 (300)
                            ...+..+++|+|||+|+... ......++...|+..++++++.+.+... . +++.+|.- .+..         
T Consensus      1048 lgl~~~~~~~l~~~~d~iiH~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~-~~v~vSS~-~v~~~~~~~~~~~ 1123 (1389)
T TIGR03443      1048 FGLSDEKWSDLTNEVDVIIHNGALVH-WVYPYSKLRDANVIGTINVLNLCAEGKA-K-QFSFVSST-SALDTEYYVNLSD 1123 (1389)
T ss_pred             CCcCHHHHHHHHhcCCEEEECCcEec-CccCHHHHHHhHHHHHHHHHHHHHhCCC-c-eEEEEeCe-eecCcccccchhh
Confidence                  12334568999999987653 2223344556799999999999887643 2 45555532 1110         


Q ss_pred             HHHHHHCCCCCC-----------CcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecC
Q 022227          139 LILKEFAPSIPA-----------KNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN  187 (300)
Q Consensus       139 ~~~~~~~~~~p~-----------~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~  187 (300)
                      ........+++.           ..-|+.++.-.+++....++ .|++..-++...|+|.
T Consensus      1124 ~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~-~g~~~~i~Rpg~v~G~ 1182 (1389)
T TIGR03443      1124 ELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGK-RGLRGCIVRPGYVTGD 1182 (1389)
T ss_pred             hhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHh-CCCCEEEECCCccccC
Confidence            000000001111           11245566666666655444 3777776666666774

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.67  E-value=0.02  Score=52.57  Aligned_cols=64  Identities=14%  Similarity=0.148  Sum_probs=43.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC---C
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG---V   82 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~---a   82 (300)
                      |||+||| .|.+|+.++..|...+.       +|..+|.++  ++++.    +.+.      ......+..+.+++   +
T Consensus         1 m~Ig~IG-lG~mG~~mA~~L~~~g~-------~v~v~dr~~--~~~~~----~~~~------g~~~~~s~~~~~~~~~~a   60 (299)
T PRK12490          1 MKLGLIG-LGKMGGNMAERLREDGH-------EVVGYDVNQ--EAVDV----AGKL------GITARHSLEELVSKLEAP   60 (299)
T ss_pred             CEEEEEc-ccHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHH----HHHC------CCeecCCHHHHHHhCCCC
Confidence            4899999 89999999999998764       688899863  33321    2111      12233455565554   6


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |+||++.
T Consensus        61 dvVi~~v   67 (299)
T PRK12490         61 RTIWVMV   67 (299)
T ss_pred             CEEEEEe
Confidence            8998873

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=96.65  E-value=0.0075  Score=49.28  Aligned_cols=116  Identities=15%  Similarity=0.098  Sum_probs=62.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhh---hhhhhhccC---CcccEEEeCChhhh--
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK---MELVDAAFP---LLKGVVATTDAVEA--   78 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~---~dl~~~~~~---~~~~v~~~~~~~~a--   78 (300)
                      ++.|+||+|.+|.+++..|++.+..      .+.+.+.++  +..+...   .++......   ...++.-..+..+.  
T Consensus         2 ~~li~Ga~~~iG~~~~~~l~~~g~~------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   73 (180)
T smart00822        2 TYLITGGLGGLGLELARWLAERGAR------HLVLLSRSG--PDAPGAAELLAELEALGAEVTVVACDVADRAALAAALA   73 (180)
T ss_pred             EEEEEcCCChHHHHHHHHHHHhhCC------eEEEEeCCC--CCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence            6899999999999999999877631      355565542  1111111   112111000   00000000011111  


Q ss_pred             -----cCCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           79 -----CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        79 -----~~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                           +...|.+|+.+|.....   ..+   -..++..|+.....+.+.+.+...  .+++++|+
T Consensus        74 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~ii~~ss  136 (180)
T smart00822       74 AIPARLGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPL--DFFVLFSS  136 (180)
T ss_pred             HHHHHcCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCc--ceEEEEcc
Confidence                 23469999999864311   111   234567888888888888866543  35666664

It uses NADPH to reduce the keto group to a hydroxy group.

>PLN02256 arogenate dehydrogenase

Probab=96.65  E-value=0.017  Score=53.20  Aligned_cols=65  Identities=14%  Similarity=0.223  Sum_probs=43.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc-CCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC-TGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~-~~a   82 (300)
                      +.+||+|+| .|.+|.+++..|...|.       ++..+|.++  .  ...+.++   .      +...++..+.+ .++
T Consensus        35 ~~~kI~IIG-~G~mG~slA~~L~~~G~-------~V~~~d~~~--~--~~~a~~~---g------v~~~~~~~e~~~~~a   93 (304)
T PLN02256         35 RKLKIGIVG-FGNFGQFLAKTFVKQGH-------TVLATSRSD--Y--SDIAAEL---G------VSFFRDPDDFCEEHP   93 (304)
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHhCCC-------EEEEEECcc--H--HHHHHHc---C------CeeeCCHHHHhhCCC
Confidence            467999999 79999999999987653       688898763  1  1111111   1      11234555555 479


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |+||++.
T Consensus        94 DvVilav  100 (304)
T PLN02256         94 DVVLLCT  100 (304)
T ss_pred             CEEEEec
Confidence            9999974

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.62  E-value=0.011  Score=50.44  Aligned_cols=75  Identities=19%  Similarity=0.219  Sum_probs=48.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEe-----CChhhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT-----TDAVEA   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~-----~~~~~a   78 (300)
                      +.++++|+||+|.+|..++..|+..+.       ++.+++++  .++++....++.+..   ...+...     .+..++
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-------~V~l~~R~--~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~   94 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA-------RVVLVGRD--LERAQKAADSLRARF---GEGVGAVETSDDAARAAA   94 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEcCC--HHHHHHHHHHHHhhc---CCcEEEeeCCCHHHHHHH
Confidence            457999999889999999999987653       68888875  355554433332111   0111111     123477


Q ss_pred             cCCCcEEEEeCC
Q 022227           79 CTGVNIAVMVGG   90 (300)
Q Consensus        79 ~~~aDvVi~~ag   90 (300)
                      ++++|+||.+..
T Consensus        95 ~~~~diVi~at~  106 (194)
T cd01078          95 IKGADVVFAAGA  106 (194)
T ss_pred             HhcCCEEEECCC
Confidence            899998888643

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.58  E-value=0.032  Score=51.36  Aligned_cols=120  Identities=14%  Similarity=0.200  Sum_probs=64.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhh----hhhhhccCCcccEEEeCChhhhcC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM----ELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~----dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      .|||+|+| +|.||..++..|...|.       ++.|++...  +.++....    -+.+.....  .+.......+...
T Consensus         2 ~m~I~IiG-aGaiG~~~a~~L~~~G~-------~V~lv~r~~--~~~~~i~~~~Gl~i~~~g~~~--~~~~~~~~~~~~~   69 (305)
T PRK05708          2 SMTWHILG-AGSLGSLWACRLARAGL-------PVRLILRDR--QRLAAYQQAGGLTLVEQGQAS--LYAIPAETADAAE   69 (305)
T ss_pred             CceEEEEC-CCHHHHHHHHHHHhCCC-------CeEEEEech--HHHHHHhhcCCeEEeeCCcce--eeccCCCCccccc
Confidence            36899999 79999999999988763       688898742  22221110    011000000  0111111123346


Q ss_pred             CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEee
Q 022227           81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL  156 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~  156 (300)
                      ..|+||++.    |.            --..+..+.+..+..++..++.+-|=++....+ .+.   +|.+++..+
T Consensus        70 ~~D~viv~v----K~------------~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l-~~~---~~~~~v~~g  125 (305)
T PRK05708         70 PIHRLLLAC----KA------------YDAEPAVASLAHRLAPGAELLLLQNGLGSQDAV-AAR---VPHARCIFA  125 (305)
T ss_pred             ccCEEEEEC----CH------------HhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHH-HHh---CCCCcEEEE
Confidence            789999984    11            011233444545443466778888877654433 332   454554333

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.58  E-value=0.049  Score=48.58  Aligned_cols=156  Identities=12%  Similarity=0.136  Sum_probs=81.2

Q ss_pred             CCcEEEEEcCCC--hHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh-c--cCCcccEEEeCC----
Q 022227            4 EPVRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-A--FPLLKGVVATTD----   74 (300)
Q Consensus         4 ~~~kV~IiGAaG--~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~-~--~~~~~~v~~~~~----   74 (300)
                      +.+.+.||||++  -||..++..|+..|.       .|++.+.++   .++....++... .  .....++.-..+    
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~-------~v~~~~r~~---~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~   76 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGA-------ELWFTYQSE---VLEKRVKPLAEEIGCNFVSELDVTNPKSISNL   76 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCC-------EEEEEeCch---HHHHHHHHHHHhcCCceEEEccCCCHHHHHHH
Confidence            345789999875  699999999998775       677877642   111111122111 0  000001100001    


Q ss_pred             ---hhhhcCCCcEEEEeCCCCCC-----C--CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           75 ---AVEACTGVNIAVMVGGFPRK-----E--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        75 ---~~~a~~~aDvVi~~ag~~~~-----~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                         ..+.+...|++|+.||....     +  ..+.   ...+..|+.....+.+.+...-.+...+|++++....     
T Consensus        77 ~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~-----  151 (260)
T PRK06603         77 FDDIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAE-----  151 (260)
T ss_pred             HHHHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccc-----
Confidence               12234568999999886421     1  1122   2345566655445444433221123467777754321     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                          ...|....|+.++--...+.+.+|.++.  +..|+
T Consensus       152 ----~~~~~~~~Y~asKaal~~l~~~la~el~--~~gIr  184 (260)
T PRK06603        152 ----KVIPNYNVMGVAKAALEASVKYLANDMG--ENNIR  184 (260)
T ss_pred             ----cCCCcccchhhHHHHHHHHHHHHHHHhh--hcCeE
Confidence                1223223466777777777888888775  34454

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=96.56  E-value=0.03  Score=50.27  Aligned_cols=62  Identities=21%  Similarity=0.221  Sum_probs=43.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .|||+|+| +|.+|++++..|.+.+.+.   +.+++.+|.++  +++                .+....+..+.++++|+
T Consensus         3 ~mkI~iIG-~G~mG~ai~~~l~~~~~~~---~~~i~~~~~~~--~~~----------------~~~~~~~~~~~~~~~D~   60 (260)
T PTZ00431          3 NIRVGFIG-LGKMGSALAYGIENSNIIG---KENIYYHTPSK--KNT----------------PFVYLQSNEELAKTCDI   60 (260)
T ss_pred             CCEEEEEC-ccHHHHHHHHHHHhCCCCC---cceEEEECCCh--hcC----------------CeEEeCChHHHHHhCCE
Confidence            46999999 7999999999999876432   11578887653  221                01123355667889999


Q ss_pred             EEEe
Q 022227           85 AVMV   88 (300)
Q Consensus        85 Vi~~   88 (300)
                      ||++
T Consensus        61 Vila   64 (260)
T PTZ00431         61 IVLA   64 (260)
T ss_pred             EEEE
Confidence            9987

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.56  E-value=0.05  Score=48.58  Aligned_cols=158  Identities=16%  Similarity=0.198  Sum_probs=79.0

Q ss_pred             CCcEEEEEcC--CChHHHHHHHHHHhcccCCCCCCeEEEEEecC-CchhhhhhhhhhhhhhccCCcccEEEeCC------
Q 022227            4 EPVRVLVTGA--AGQIGYALVPMIARGVMLGTDQPVILHMLDIP-PAAEALNGVKMELVDAAFPLLKGVVATTD------   74 (300)
Q Consensus         4 ~~~kV~IiGA--aG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~-~~~~~l~g~~~dl~~~~~~~~~~v~~~~~------   74 (300)
                      +.+++.||||  ++-+|..++..|++.|.       .+++.+.. .+.++++....++... .....++.-..+      
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~-------~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~   76 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGA-------ELAFTYVGDRFKDRITEFAAEFGSD-LVFPCDVASDEQIDALFA   76 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCC-------eEEEEccchHHHHHHHHHHHhcCCc-ceeeccCCCHHHHHHHHH
Confidence            3467999996  46899999999998875       67777542 1122332211111100 000011110011      


Q ss_pred             -hhhhcCCCcEEEEeCCCCCCC--------CCcHH---HHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           75 -AVEACTGVNIAVMVGGFPRKE--------GMERK---DVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        75 -~~~a~~~aDvVi~~ag~~~~~--------g~~r~---dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                       ..+.+...|++|+.||.....        ..+..   ..+..|+.....+.+.+..+-.+...+|++++-...      
T Consensus        77 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~------  150 (260)
T PRK06997         77 SLGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAE------  150 (260)
T ss_pred             HHHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccc------
Confidence             112245689999999875321        12222   235556554444444433321122456776643210      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                         .+.|....|+.++--...+.+.+|.++.  +..|+
T Consensus       151 ---~~~~~~~~Y~asKaal~~l~~~la~el~--~~gIr  183 (260)
T PRK06997        151 ---RVVPNYNTMGLAKASLEASVRYLAVSLG--PKGIR  183 (260)
T ss_pred             ---cCCCCcchHHHHHHHHHHHHHHHHHHhc--ccCeE
Confidence               1123222355666666677777887764  33454

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.56  E-value=0.012  Score=48.07  Aligned_cols=75  Identities=15%  Similarity=0.131  Sum_probs=48.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +.++|+|+| +|.+|..++..|...+. .     ++.++|.+.  ++++..+.++....    ... ...+..+.++++|
T Consensus        18 ~~~~i~iiG-~G~~g~~~a~~l~~~g~-~-----~v~v~~r~~--~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~D   83 (155)
T cd01065          18 KGKKVLILG-AGGAARAVAYALAELGA-A-----KIVIVNRTL--EKAKALAERFGELG----IAI-AYLDLEELLAEAD   83 (155)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCC-C-----EEEEEcCCH--HHHHHHHHHHhhcc----cce-eecchhhccccCC
Confidence            457999999 69999999999987651 1     689999863  44443332222110    011 1235556689999


Q ss_pred             EEEEeCCCC
Q 022227           84 IAVMVGGFP   92 (300)
Q Consensus        84 vVi~~ag~~   92 (300)
                      +||.+....
T Consensus        84 vvi~~~~~~   92 (155)
T cd01065          84 LIINTTPVG   92 (155)
T ss_pred             EEEeCcCCC
Confidence            999986544

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.55  E-value=0.019  Score=52.99  Aligned_cols=103  Identities=17%  Similarity=0.239  Sum_probs=62.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +.++|+|+| +|.+|..++..|...+..      ++.++|+++  +++...+..+..       .+....+..+++.++|
T Consensus       177 ~~~~V~ViG-aG~iG~~~a~~L~~~g~~------~V~v~~r~~--~ra~~la~~~g~-------~~~~~~~~~~~l~~aD  240 (311)
T cd05213         177 KGKKVLVIG-AGEMGELAAKHLAAKGVA------EITIANRTY--ERAEELAKELGG-------NAVPLDELLELLNEAD  240 (311)
T ss_pred             cCCEEEEEC-cHHHHHHHHHHHHHcCCC------EEEEEeCCH--HHHHHHHHHcCC-------eEEeHHHHHHHHhcCC
Confidence            467999999 699999999988875431      688998863  444333322211       1112234667789999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhH
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN  137 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~  137 (300)
                      +||.+.+.+..     .       .......   +....++..++-+++|-|+-
T Consensus       241 vVi~at~~~~~-----~-------~~~~~~~---~~~~~~~~~viDlavPrdi~  279 (311)
T cd05213         241 VVISATGAPHY-----A-------KIVERAM---KKRSGKPRLIVDLAVPRDIE  279 (311)
T ss_pred             EEEECCCCCch-----H-------HHHHHHH---hhCCCCCeEEEEeCCCCCCc
Confidence            99998665431     1       1111221   11111245788899998743

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.53  E-value=0.026  Score=54.65  Aligned_cols=117  Identities=20%  Similarity=0.210  Sum_probs=66.9

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      |.++.++|.|+| +|.+|..++..|+..|.       +|+++|.+.. +.++....++...    ..++.......+...
T Consensus         1 ~~~~~k~v~iiG-~g~~G~~~A~~l~~~G~-------~V~~~d~~~~-~~~~~~~~~l~~~----~~~~~~~~~~~~~~~   67 (450)
T PRK14106          1 MELKGKKVLVVG-AGVSGLALAKFLKKLGA-------KVILTDEKEE-DQLKEALEELGEL----GIELVLGEYPEEFLE   67 (450)
T ss_pred             CCcCCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEeCCch-HHHHHHHHHHHhc----CCEEEeCCcchhHhh
Confidence            656678999999 57899999999999886       7999998642 2222212222211    112222222234467


Q ss_pred             CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                      ++|+||.++|.+.... .....-..+++++.......... +  .++|-+|-+.
T Consensus        68 ~~d~vv~~~g~~~~~~-~~~~a~~~~i~~~~~~~~~~~~~-~--~~vI~ITGS~  117 (450)
T PRK14106         68 GVDLVVVSPGVPLDSP-PVVQAHKKGIEVIGEVELAYRFS-K--APIVAITGTN  117 (450)
T ss_pred             cCCEEEECCCCCCCCH-HHHHHHHCCCcEEeHHHHHHhhc-C--CCEEEEeCCC
Confidence            8999999988753211 11112234566666555433322 1  2466666554

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=96.53  E-value=0.012  Score=54.32  Aligned_cols=120  Identities=11%  Similarity=0.003  Sum_probs=64.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcc-cCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCCh-----
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGV-MLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDA-----   75 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~-~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~-----   75 (300)
                      .+.+.||||++.+|..++..|+..| .       .|++.++++  ++++....++......   ...++.-..+.     
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~-------~V~l~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~   73 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEW-------HVIMACRDF--LKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQ   73 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCC-------EEEEEeCCH--HHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence            3478999999999999999999877 4       688888753  3333222222110000   00011000011     


Q ss_pred             --hhhcCCCcEEEEeCCCCCC----CCCcH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCc
Q 022227           76 --VEACTGVNIAVMVGGFPRK----EGMER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        76 --~~a~~~aDvVi~~ag~~~~----~g~~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                        .+.+...|++|+.||....    +..+.   ...+..|...    ++.+.+.+++.+....+||++|+-
T Consensus        74 ~~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~  144 (314)
T TIGR01289        74 QFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSI  144 (314)
T ss_pred             HHHHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecC
Confidence              1113468999999987421    11222   2345566544    555566665542112467777653

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.50  E-value=0.029  Score=51.46  Aligned_cols=64  Identities=19%  Similarity=0.284  Sum_probs=42.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC---C
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG---V   82 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~---a   82 (300)
                      |||+|+| .|.+|+.++..|+..|.       ++.++|.++  ++++.    +.+.      .+....+..+.++.   +
T Consensus         1 m~Ig~IG-lG~MG~~mA~~L~~~g~-------~v~v~dr~~--~~~~~----~~~~------g~~~~~~~~e~~~~~~~~   60 (301)
T PRK09599          1 MQLGMIG-LGRMGGNMARRLLRGGH-------EVVGYDRNP--EAVEA----LAEE------GATGADSLEELVAKLPAP   60 (301)
T ss_pred             CEEEEEc-ccHHHHHHHHHHHHCCC-------eEEEEECCH--HHHHH----HHHC------CCeecCCHHHHHhhcCCC
Confidence            4899999 89999999999998764       789999863  33332    2211      11223345454444   6


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |+||++.
T Consensus        61 dvvi~~v   67 (301)
T PRK09599         61 RVVWLMV   67 (301)
T ss_pred             CEEEEEe
Confidence            8888873

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.48  E-value=0.0071  Score=52.80  Aligned_cols=161  Identities=17%  Similarity=0.196  Sum_probs=97.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch--hhhhhhhhhh---hhhc-c-------CCcccEEE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--EALNGVKMEL---VDAA-F-------PLLKGVVA   71 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~--~~l~g~~~dl---~~~~-~-------~~~~~v~~   71 (300)
                      .-||+|.| +|-+|++.|..++..|+       ++.|||+.+..  ..|+...-|+   +... .       .....+..
T Consensus         3 ~~ki~ivg-Sgl~g~~WAmlFAs~Gy-------qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~   74 (313)
T KOG2305|consen    3 FGKIAIVG-SGLVGSSWAMLFASSGY-------QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISG   74 (313)
T ss_pred             ccceeEee-cccccchHHHHHhccCc-------eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhC
Confidence            45999999 89999999999999887       89999996421  1122222222   2211 1       01245667


Q ss_pred             eCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHC------
Q 022227           72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFA------  145 (300)
Q Consensus        72 ~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~------  145 (300)
                      ++++.|..++|=.|=.+              +.+.+..-+.+-+++.+...|  ..|+.|+.+..|...+..-.      
T Consensus        75 t~~l~E~vk~Ai~iQEc--------------vpE~L~lkk~ly~qlD~i~d~--~tIlaSSTSt~mpS~~s~gL~~k~q~  138 (313)
T KOG2305|consen   75 TTSLNELVKGAIHIQEC--------------VPEDLNLKKQLYKQLDEIADP--TTILASSTSTFMPSKFSAGLINKEQC  138 (313)
T ss_pred             CccHHHHHhhhhhHHhh--------------chHhhHHHHHHHHHHHHhcCC--ceEEeccccccChHHHhhhhhhhhhe
Confidence            78888888888443222              222344556777788887644  46778877766654332210      


Q ss_pred             ----CCCCC-----CcE--EeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          146 ----PSIPA-----KNI--TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       146 ----~~~p~-----~~i--~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                          |-.|+     -.+  --+|..|+..-.+.+.+++|-.|.-...-+ .|+-=+
T Consensus       139 lvaHPvNPPyfiPLvElVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei-~Gf~ln  193 (313)
T KOG2305|consen  139 LVAHPVNPPYFIPLVELVPAPWTSPDTVDRTRALMRSIGQEPVTLKREI-LGFALN  193 (313)
T ss_pred             eEecCCCCCcccchheeccCCCCChhHHHHHHHHHHHhCCCCccccccc-ccceec
Confidence                00111     111  235777776556677889998888887664 565443

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=96.47  E-value=0.0097  Score=53.91  Aligned_cols=74  Identities=22%  Similarity=0.278  Sum_probs=46.1

Q ss_pred             CC-CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEE-EEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhh
Q 022227            1 MA-KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA   78 (300)
Q Consensus         1 m~-~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~-L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a   78 (300)
                      |+ |+++||+|+| .|.+|..++..|... ..    ..+++ ++|.++  ++.+..+..+. .       ....++.++.
T Consensus         1 ~~~m~~irIGIIG-~G~IG~~~a~~L~~~-~~----~~el~aV~dr~~--~~a~~~a~~~g-~-------~~~~~~~eel   64 (271)
T PRK13302          1 MSSRPELRVAIAG-LGAIGKAIAQALDRG-LP----GLTLSAVAVRDP--QRHADFIWGLR-R-------PPPVVPLDQL   64 (271)
T ss_pred             CCCCCeeEEEEEC-ccHHHHHHHHHHHhc-CC----CeEEEEEECCCH--HHHHHHHHhcC-C-------CcccCCHHHH
Confidence            44 4678999999 799999999888753 10    12554 778753  33332221111 0       0123466777


Q ss_pred             cCCCcEEEEeCC
Q 022227           79 CTGVNIAVMVGG   90 (300)
Q Consensus        79 ~~~aDvVi~~ag   90 (300)
                      ++++|+|++++.
T Consensus        65 l~~~D~Vvi~tp   76 (271)
T PRK13302         65 ATHADIVVEAAP   76 (271)
T ss_pred             hcCCCEEEECCC
Confidence            889999999864

>PRK08303 short chain dehydrogenase; Provisional

Probab=96.44  E-value=0.041  Score=50.58  Aligned_cols=160  Identities=11%  Similarity=0.035  Sum_probs=82.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc--------hhhhhhhhhhhhhhcc---CCcccEEEe
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA--------AEALNGVKMELVDAAF---PLLKGVVAT   72 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~--------~~~l~g~~~dl~~~~~---~~~~~v~~~   72 (300)
                      +.+.+.||||++.||..++..|+..|.       .|++.+++..        .++++..+..+.....   ....++.-.
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~-------~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~   79 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGA-------TVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVP   79 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCH
Confidence            446899999999999999999998875       6888887521        1222222222221100   000011101


Q ss_pred             CC-------hhhhcCCCcEEEEeC-CCCC-----CC--CCcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEe
Q 022227           73 TD-------AVEACTGVNIAVMVG-GFPR-----KE--GMERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVV  130 (300)
Q Consensus        73 ~~-------~~~a~~~aDvVi~~a-g~~~-----~~--g~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~  130 (300)
                      .+       ..+.+...|++|+.| |...     .+  ..+..   +.+..|+.    ..+.+.+.+.+..  ...||++
T Consensus        80 ~~v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~--~g~IV~i  157 (305)
T PRK08303         80 EQVRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRP--GGLVVEI  157 (305)
T ss_pred             HHHHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCC--CcEEEEE
Confidence            11       112234689999998 7421     11  11111   23344443    4455555554432  2467777


Q ss_pred             cCchhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          131 ANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       131 sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      |+.....      .....+..-.|+.++.-...+.+.+|.+++  +..|+
T Consensus       158 sS~~~~~------~~~~~~~~~~Y~asKaal~~lt~~La~el~--~~gIr  199 (305)
T PRK08303        158 TDGTAEY------NATHYRLSVFYDLAKTSVNRLAFSLAHELA--PHGAT  199 (305)
T ss_pred             CCccccc------cCcCCCCcchhHHHHHHHHHHHHHHHHHhh--hcCcE
Confidence            7532210      001111112366667666777778888765  44555

>PRK07041 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.013  Score=50.87  Aligned_cols=112  Identities=15%  Similarity=0.088  Sum_probs=60.9

Q ss_pred             EEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc-c-CCcccEEEeCChhhhc---CCCc
Q 022227            9 LVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-F-PLLKGVVATTDAVEAC---TGVN   83 (300)
Q Consensus         9 ~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~-~-~~~~~v~~~~~~~~a~---~~aD   83 (300)
                      .|+||+|++|+.++..|++.|.       +++++++++  ++++....++.... . ....++.-..+..+++   ...|
T Consensus         1 lItGas~~iG~~~a~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id   71 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGA-------RVTIASRSR--DRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFD   71 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCC
Confidence            3899999999999999998875       788898863  33332222221100 0 0001111111222222   3479


Q ss_pred             EEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEec
Q 022227           84 IAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA  131 (300)
Q Consensus        84 vVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~s  131 (300)
                      ++|+.+|.....   ..+   -.+.+..|+.....+.+.. .... ...+|+++
T Consensus        72 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~-~~~~-~g~iv~~s  123 (230)
T PRK07041         72 HVVITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAA-RIAP-GGSLTFVS  123 (230)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhh-hhcC-CeEEEEEC
Confidence            999999864321   111   2345667777666676633 2222 23455554

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.41  E-value=0.029  Score=52.66  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=27.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEec
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI   44 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~   44 (300)
                      ++||+|+||+|++|+.++..|.....      .+++++..
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p~------~el~~~~~   36 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHPW------FEVTALAA   36 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCCC------ceEEEEEc
Confidence            57999999999999999998885432      26777743

>PLN02712 arogenate dehydrogenase

Probab=96.40  E-value=0.038  Score=56.38  Aligned_cols=65  Identities=15%  Similarity=0.244  Sum_probs=43.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc-CCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC-TGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~-~~a   82 (300)
                      +++||+||| .|.+|.+++..|...|.       +|..+|.+.  ...  .+.++         .+...++..+.+ ++|
T Consensus        51 ~~~kIgIIG-~G~mG~slA~~L~~~G~-------~V~~~dr~~--~~~--~A~~~---------Gv~~~~d~~e~~~~~a  109 (667)
T PLN02712         51 TQLKIAIIG-FGNYGQFLAKTLISQGH-------TVLAHSRSD--HSL--AARSL---------GVSFFLDPHDLCERHP  109 (667)
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHH--HHHHc---------CCEEeCCHHHHhhcCC
Confidence            357999999 79999999999987763       688898752  111  11111         112234555544 579


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |+||++.
T Consensus       110 DvViLav  116 (667)
T PLN02712        110 DVILLCT  116 (667)
T ss_pred             CEEEEcC
Confidence            9999983

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.39  E-value=0.096  Score=46.70  Aligned_cols=155  Identities=15%  Similarity=0.208  Sum_probs=77.5

Q ss_pred             CCcEEEEEcC--CChHHHHHHHHHHhcccCCCCCCeEEEEEecCC-chhhhhhhhhhhhhhccCCcccEEEeCC------
Q 022227            4 EPVRVLVTGA--AGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-AAEALNGVKMELVDAAFPLLKGVVATTD------   74 (300)
Q Consensus         4 ~~~kV~IiGA--aG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~-~~~~l~g~~~dl~~~~~~~~~~v~~~~~------   74 (300)
                      +.+.+.||||  ++-||..++..|++.|.       .+++.++.+ ..+.++....++.. ......++.-..+      
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~-------~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~   76 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGA-------ELAFTYVVDKLEERVRKMAAELDS-ELVFRCDVASDDEINQVFA   76 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCC-------EEEEEcCcHHHHHHHHHHHhccCC-ceEEECCCCCHHHHHHHHH
Confidence            4468999996  56899999999998875       677766531 11222211111100 0000011111111      


Q ss_pred             -hhhhcCCCcEEEEeCCCCCC-----C---CCcHHH---HHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCchhhHH
Q 022227           75 -AVEACTGVNIAVMVGGFPRK-----E---GMERKD---VMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNA  138 (300)
Q Consensus        75 -~~~a~~~aDvVi~~ag~~~~-----~---g~~r~d---l~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP~~~~~  138 (300)
                       ..+.+...|++|+.||....     +   ..+..+   .+..|+...    +.+.+.+++.   ...+|++|+....  
T Consensus        77 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~---~g~Iv~iss~~~~--  151 (261)
T PRK08690         77 DLGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGR---NSAIVALSYLGAV--  151 (261)
T ss_pred             HHHHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhc---CcEEEEEcccccc--
Confidence             11223468999999987532     1   122222   234555433    3333434322   2356676654321  


Q ss_pred             HHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       139 ~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                             ...|....|+.++--...+.+.+|.++.  +..|+
T Consensus       152 -------~~~~~~~~Y~asKaal~~l~~~la~e~~--~~gIr  184 (261)
T PRK08690        152 -------RAIPNYNVMGMAKASLEAGIRFTAACLG--KEGIR  184 (261)
T ss_pred             -------cCCCCcccchhHHHHHHHHHHHHHHHhh--hcCeE
Confidence                   1223223466666666667777777664  34454

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.39  E-value=0.0075  Score=54.58  Aligned_cols=119  Identities=14%  Similarity=0.227  Sum_probs=71.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhc----ccCCCCCCeEEEEEecCCc----hhhhhhhhhhhhhhccCCcccEEEeCChh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARG----VMLGTDQPVILHMLDIPPA----AEALNGVKMELVDAAFPLLKGVVATTDAV   76 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~----~~~~~~~~~~l~L~D~~~~----~~~l~g~~~dl~~~~~~~~~~v~~~~~~~   76 (300)
                      ..||+|.| +|..|..++..|...    |+-.+.-...+.++|.+.-    .+.+......+.+..    .. ....++.
T Consensus        25 d~~iv~~G-AGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~----~~-~~~~~L~   98 (279)
T cd05312          25 DQRILFLG-AGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD----EE-KEGKSLL   98 (279)
T ss_pred             hcEEEEEC-cCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc----Cc-ccCCCHH
Confidence            36999999 799999999888765    5411111126899997531    111211122222211    10 1235799


Q ss_pred             hhcC--CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh---hHHHHHHHH
Q 022227           77 EACT--GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN---TNALILKEF  144 (300)
Q Consensus        77 ~a~~--~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~---~~~~~~~~~  144 (300)
                      ++++  ++|+.|=+.+.+   |           -+.+++++.|.++++ +.+|.-.|||..   ....-+.+.
T Consensus        99 e~i~~v~ptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~-~PIIFaLSNPt~~~E~~pe~a~~~  156 (279)
T cd05312          99 EVVKAVKPTVLIGLSGVG---G-----------AFTEEVVRAMAKSNE-RPIIFALSNPTSKAECTAEDAYKW  156 (279)
T ss_pred             HHHHhcCCCEEEEeCCCC---C-----------CCCHHHHHHHHhcCC-CCEEEECCCcCCccccCHHHHHHh
Confidence            9999  899988765433   2           122578888888886 467888899964   444444443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=96.36  E-value=0.03  Score=49.63  Aligned_cols=155  Identities=14%  Similarity=0.114  Sum_probs=78.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHh----cccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-----CcccEEEeCChhh
Q 022227            7 RVLVTGAAGQIGYALVPMIAR----GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-----LLKGVVATTDAVE   77 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~----~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-----~~~~v~~~~~~~~   77 (300)
                      .+.||||++.+|..++..|+.    .|.       .|++.++++  ++++....++......     ...++.-..+..+
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~   72 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGS-------VLVLSARND--EALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQ   72 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCc-------EEEEEEcCH--HHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHH
Confidence            478999999999999999986    343       688888753  4454443344321000     0001110001111


Q ss_pred             hc---C--------CCcEEEEeCCCCCCC----C--CcH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCc
Q 022227           78 AC---T--------GVNIAVMVGGFPRKE----G--MER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        78 a~---~--------~aDvVi~~ag~~~~~----g--~~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                      .+   .        +-|++|+.||.....    .  .+.   ...+..|+..    .+.+.+.+.+.......++++|+.
T Consensus        73 ~~~~~~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~  152 (256)
T TIGR01500        73 LLKALRELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSL  152 (256)
T ss_pred             HHHHHHhccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCH
Confidence            11   1        125889999864211    1  111   2345666544    444455554431112456776653


Q ss_pred             hhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEE
Q 022227          134 ANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN  181 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~  181 (300)
                      ...         ...|..-.++.++.-...+.+.++.++.  +.+|+.
T Consensus       153 ~~~---------~~~~~~~~Y~asKaal~~l~~~la~e~~--~~~i~v  189 (256)
T TIGR01500       153 CAI---------QPFKGWALYCAGKAARDMLFQVLALEEK--NPNVRV  189 (256)
T ss_pred             HhC---------CCCCCchHHHHHHHHHHHHHHHHHHHhc--CCCeEE
Confidence            321         1122112345555555667777777764  445653

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=96.34  E-value=0.03  Score=48.95  Aligned_cols=90  Identities=17%  Similarity=0.246  Sum_probs=57.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||.++| .|.||..++..+..+.. +  .+ -+.++|.++  ++++.    +....   ...  ..++..+.+.+.|++
T Consensus         1 l~vgiVG-cGaIG~~l~e~v~~~~~-~--~e-~v~v~D~~~--ek~~~----~~~~~---~~~--~~s~ide~~~~~Dlv   64 (255)
T COG1712           1 LKVGIVG-CGAIGKFLLELVRDGRV-D--FE-LVAVYDRDE--EKAKE----LEASV---GRR--CVSDIDELIAEVDLV   64 (255)
T ss_pred             CeEEEEe-ccHHHHHHHHHHhcCCc-c--ee-EEEEecCCH--HHHHH----HHhhc---CCC--ccccHHHHhhcccee
Confidence            5899999 79999998877664421 1  11 467788863  44432    21111   111  125677777999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEE
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL  128 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~vi  128 (300)
                      +-+|+.                +.+++++..+-+.+. ++.++
T Consensus        65 VEaAS~----------------~Av~e~~~~~L~~g~-d~iV~   90 (255)
T COG1712          65 VEAASP----------------EAVREYVPKILKAGI-DVIVM   90 (255)
T ss_pred             eeeCCH----------------HHHHHHhHHHHhcCC-CEEEE
Confidence            999853                556788888887765 65333

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.34  E-value=0.022  Score=52.95  Aligned_cols=66  Identities=11%  Similarity=-0.018  Sum_probs=44.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +.+||+||| .|.+|.+++..|...|+       +++..+.+..  +....+.   ...      +.. .+..++++.||
T Consensus        16 ~gktIgIIG-~GsmG~AlA~~L~~sG~-------~Vvv~~r~~~--~s~~~A~---~~G------~~~-~s~~eaa~~AD   75 (330)
T PRK05479         16 KGKKVAIIG-YGSQGHAHALNLRDSGV-------DVVVGLREGS--KSWKKAE---ADG------FEV-LTVAEAAKWAD   75 (330)
T ss_pred             CCCEEEEEe-eHHHHHHHHHHHHHCCC-------EEEEEECCch--hhHHHHH---HCC------Cee-CCHHHHHhcCC
Confidence            457999999 79999999999988764       5766665421  1111111   111      112 26778899999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +|+++.
T Consensus        76 VVvLaV   81 (330)
T PRK05479         76 VIMILL   81 (330)
T ss_pred             EEEEcC
Confidence            999984

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=96.33  E-value=0.015  Score=50.89  Aligned_cols=25  Identities=32%  Similarity=0.359  Sum_probs=22.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhccc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVM   30 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~   30 (300)
                      ..+.|+||+|++|+.++..|++.|.
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~   26 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGY   26 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC
Confidence            3689999999999999999998764

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.32  E-value=0.057  Score=47.90  Aligned_cols=33  Identities=21%  Similarity=0.201  Sum_probs=26.7

Q ss_pred             CCcEEEEEcCCC--hHHHHHHHHHHhcccCCCCCCeEEEEEe
Q 022227            4 EPVRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLD   43 (300)
Q Consensus         4 ~~~kV~IiGAaG--~vG~~la~~L~~~~~~~~~~~~~l~L~D   43 (300)
                      +.++|.||||+|  .+|.+++..|++.|.       ++++.+
T Consensus         5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~-------~vi~~~   39 (256)
T PRK12859          5 KNKVAVVTGVSRLDGIGAAICKELAEAGA-------DIFFTY   39 (256)
T ss_pred             CCcEEEEECCCCCCChHHHHHHHHHHCCC-------eEEEEe
Confidence            457899999874  799999999998874       566654

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.29  E-value=0.014  Score=55.54  Aligned_cols=36  Identities=22%  Similarity=0.333  Sum_probs=28.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      +++||+|+||+|.+|..++..|.....      .+|.++...
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~------~el~~l~s~   72 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPD------FEITVMTAD   72 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCC------CeEEEEECh
Confidence            346999999999999999998887643      278887653

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=96.28  E-value=0.027  Score=55.31  Aligned_cols=73  Identities=10%  Similarity=0.061  Sum_probs=46.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC--
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG--   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~--   81 (300)
                      +.++|++|| .|.+|+.++..|+..|.       +|+.+|+..  ++.+..........   ...+....+..+..+.  
T Consensus         5 ~~~~IG~IG-LG~MG~~mA~nL~~~G~-------~V~V~NRt~--~k~~~l~~~~~~~G---a~~~~~a~s~~e~v~~l~   71 (493)
T PLN02350          5 ALSRIGLAG-LAVMGQNLALNIAEKGF-------PISVYNRTT--SKVDETVERAKKEG---NLPLYGFKDPEDFVLSIQ   71 (493)
T ss_pred             CCCCEEEEe-eHHHHHHHHHHHHhCCC-------eEEEECCCH--HHHHHHHHhhhhcC---CcccccCCCHHHHHhcCC
Confidence            457899999 99999999999998875       799999863  44332211000000   0112233455555554  


Q ss_pred             -CcEEEEeC
Q 022227           82 -VNIAVMVG   89 (300)
Q Consensus        82 -aDvVi~~a   89 (300)
                       +|+||++-
T Consensus        72 ~~dvIi~~v   80 (493)
T PLN02350         72 KPRSVIILV   80 (493)
T ss_pred             CCCEEEEEC
Confidence             99999973

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=96.26  E-value=0.048  Score=49.93  Aligned_cols=81  Identities=20%  Similarity=0.219  Sum_probs=52.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhh--------hhhcc-CCcccEEEeCChh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL--------VDAAF-PLLKGVVATTDAV   76 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl--------~~~~~-~~~~~v~~~~~~~   76 (300)
                      +|||-|| +|+||-.....++..     +.++++.++|++.  ++....--|-        .+.-. ....++...+|.+
T Consensus         2 ~kiccig-agyvggptcavia~k-----cp~i~vtvvd~s~--~ri~~wnsd~lpiyepgldevv~~crgknlffstdie   73 (481)
T KOG2666|consen    2 VKICCIG-AGYVGGPTCAVIALK-----CPDIEVTVVDISV--PRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIE   73 (481)
T ss_pred             ceEEEec-CcccCCcchheeeec-----CCceEEEEEecCc--hHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchH
Confidence            6999999 799987655443321     2346899999964  3333221111        11000 1245777888999


Q ss_pred             hhcCCCcEEEEeCCCCCC
Q 022227           77 EACTGVNIAVMVGGFPRK   94 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~   94 (300)
                      .+++.||+||+....|.+
T Consensus        74 kai~eadlvfisvntptk   91 (481)
T KOG2666|consen   74 KAIKEADLVFISVNTPTK   91 (481)
T ss_pred             HHhhhcceEEEEecCCcc
Confidence            999999999998766654

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.25  E-value=0.043  Score=51.83  Aligned_cols=73  Identities=14%  Similarity=0.203  Sum_probs=42.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      ++|+|+||+|.+|.-+...|+...-|..   .+++++....    ..+....+....     .........+.++++|+|
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~---~~l~~~ss~~----sg~~~~~f~g~~-----~~v~~~~~~~~~~~~Div   69 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDL---IEPVFFSTSQ----AGGAAPSFGGKE-----GTLQDAFDIDALKKLDII   69 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCc---CcEEEecchh----hCCcccccCCCc-----ceEEecCChhHhcCCCEE
Confidence            6999999999999999986665433321   1477765432    111211222110     111111223567999999


Q ss_pred             EEeCC
Q 022227           86 VMVGG   90 (300)
Q Consensus        86 i~~ag   90 (300)
                      |++++
T Consensus        70 f~a~~   74 (369)
T PRK06598         70 ITCQG   74 (369)
T ss_pred             EECCC
Confidence            99875

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=96.23  E-value=0.028  Score=52.32  Aligned_cols=73  Identities=22%  Similarity=0.240  Sum_probs=50.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      .+.+++|+| +|..|...+..+....-+     .++.++|+++  ++++..+.++.+.    ...+....+.++++++||
T Consensus       127 ~~~~lgiiG-~G~qA~~~l~al~~~~~~-----~~v~V~~r~~--~~~~~~~~~~~~~----g~~v~~~~~~~eav~~aD  194 (325)
T TIGR02371       127 DSSVLGIIG-AGRQAWTQLEALSRVFDL-----EEVSVYCRTP--STREKFALRASDY----EVPVRAATDPREAVEGCD  194 (325)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhcCCC-----CEEEEECCCH--HHHHHHHHHHHhh----CCcEEEeCCHHHHhccCC
Confidence            457899999 899999877666542111     2799999864  5555554444321    123555678899999999


Q ss_pred             EEEEe
Q 022227           84 IAVMV   88 (300)
Q Consensus        84 vVi~~   88 (300)
                      +|+.+
T Consensus       195 iVita  199 (325)
T TIGR02371       195 ILVTT  199 (325)
T ss_pred             EEEEe
Confidence            99875

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK06720 hypothetical protein; Provisional

Probab=96.21  E-value=0.032  Score=46.82  Aligned_cols=36  Identities=22%  Similarity=0.187  Sum_probs=30.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      .+.+.+.|+||++.+|..++..|++.|.       ++.+.|.+
T Consensus        14 l~gk~~lVTGa~~GIG~aia~~l~~~G~-------~V~l~~r~   49 (169)
T PRK06720         14 LAGKVAIVTGGGIGIGRNTALLLAKQGA-------KVIVTDID   49 (169)
T ss_pred             cCCCEEEEecCCChHHHHHHHHHHHCCC-------EEEEEECC
Confidence            3457899999999999999999998774       78899875

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.18  E-value=0.0049  Score=58.50  Aligned_cols=76  Identities=22%  Similarity=0.311  Sum_probs=44.0

Q ss_pred             EEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEe--CChhhhcCCCcEE
Q 022227            8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT--TDAVEACTGVNIA   85 (300)
Q Consensus         8 V~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~--~~~~~a~~~aDvV   85 (300)
                      |.|+|| |++|+.++..|++..-+.     ++++.|++.  ++++.....+...... ...+...  .++.+.++++|+|
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~-----~v~va~r~~--~~~~~~~~~~~~~~~~-~~~~d~~~~~~l~~~~~~~dvV   71 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFE-----EVTVADRNP--EKAERLAEKLLGDRVE-AVQVDVNDPESLAELLRGCDVV   71 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE------EEEEEESSH--HHHHHHHT--TTTTEE-EEE--TTTHHHHHHHHTTSSEE
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCC-----cEEEEECCH--HHHHHHHhhcccccee-EEEEecCCHHHHHHHHhcCCEE
Confidence            789997 999999999998764221     799999963  5554433222111100 0011111  1256678999999


Q ss_pred             EEeCCCC
Q 022227           86 VMVGGFP   92 (300)
Q Consensus        86 i~~ag~~   92 (300)
                      |.++|..
T Consensus        72 in~~gp~   78 (386)
T PF03435_consen   72 INCAGPF   78 (386)
T ss_dssp             EE-SSGG
T ss_pred             EECCccc
Confidence            9998765

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.16  E-value=0.073  Score=46.01  Aligned_cols=35  Identities=29%  Similarity=0.467  Sum_probs=30.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      +..||+|+| +|.+|+.++..|+..|+ +     +++|+|.+
T Consensus        20 ~~~~V~IvG-~GglGs~ia~~La~~Gv-g-----~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICG-LGGLGSNVAINLARAGI-G-----KLILVDFD   54 (200)
T ss_pred             hCCcEEEEC-cCHHHHHHHHHHHHcCC-C-----EEEEECCC
Confidence            356999999 79999999999999886 3     69999976

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=96.15  E-value=0.037  Score=52.15  Aligned_cols=72  Identities=13%  Similarity=0.143  Sum_probs=44.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeC-ChhhhcCCCcE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT-DAVEACTGVNI   84 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~-~~~~a~~~aDv   84 (300)
                      +||+|+||+|.||+.+...|.....|.   -.+++++....    ..+....+..      ....+.. +..++++++|+
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp---~~~~~~~ss~~----s~g~~~~f~~------~~~~v~~~~~~~~~~~vDi   67 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFD---AIRPVFFSTSQ----LGQAAPSFGG------TTGTLQDAFDIDALKALDI   67 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCc---cccEEEEEchh----hCCCcCCCCC------CcceEEcCcccccccCCCE
Confidence            489999999999999999888443332   12688886532    2222222211      1122222 22247899999


Q ss_pred             EEEeCC
Q 022227           85 AVMVGG   90 (300)
Q Consensus        85 Vi~~ag   90 (300)
                      ||+++|
T Consensus        68 vffa~g   73 (366)
T TIGR01745        68 IITCQG   73 (366)
T ss_pred             EEEcCC
Confidence            999875

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.14  E-value=0.021  Score=52.62  Aligned_cols=71  Identities=11%  Similarity=0.190  Sum_probs=47.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCe-EEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPV-ILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~-~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      ..++|+| ||+|.||..+...|-+++.     ++ +++|+....   +..|....+.      ...+++..-..++++++
T Consensus         2 ~~~~iAi-GATg~VG~~~l~~Leer~f-----pv~~l~l~~s~~---~s~gk~i~f~------g~~~~V~~l~~~~f~~v   66 (322)
T PRK06901          2 ATLNIAI-AAEFELSEKLLEALEQSDL-----EIEQISIVEIEP---FGEEQGIRFN------NKAVEQIAPEEVEWADF   66 (322)
T ss_pred             CcceEEE-ecCcHHHHHHHHHHHhcCC-----chhheeeccccc---ccCCCEEEEC------CEEEEEEECCccCcccC
Confidence            3468999 9999999999998887764     22 688887641   1122222221      23444444345679999


Q ss_pred             cEEEEeCC
Q 022227           83 NIAVMVGG   90 (300)
Q Consensus        83 DvVi~~ag   90 (300)
                      |++|+ +|
T Consensus        67 Dia~f-ag   73 (322)
T PRK06901         67 NYVFF-AG   73 (322)
T ss_pred             CEEEE-cC
Confidence            99999 65

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.14  E-value=0.026  Score=52.70  Aligned_cols=75  Identities=24%  Similarity=0.392  Sum_probs=44.5

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      |+ +++||+|+||+|++|.-++..|.+++.    ...+++++...+.    .|..+.+..      ....+.....++++
T Consensus         1 m~-~~~~IaIvGATG~vG~eLlrlL~~~~h----P~~~l~~v~s~~~----aG~~l~~~~------~~l~~~~~~~~~~~   65 (336)
T PRK05671          1 MS-QPLDIAVVGATGTVGEALVQILEERDF----PVGTLHLLASSES----AGHSVPFAG------KNLRVREVDSFDFS   65 (336)
T ss_pred             CC-CCCEEEEEccCCHHHHHHHHHHhhCCC----CceEEEEEECccc----CCCeeccCC------cceEEeeCChHHhc
Confidence            54 348999999999999999999886542    1126666654321    122222221      12222221223478


Q ss_pred             CCcEEEEeCC
Q 022227           81 GVNIAVMVGG   90 (300)
Q Consensus        81 ~aDvVi~~ag   90 (300)
                      ++|+||++.+
T Consensus        66 ~vD~vFla~p   75 (336)
T PRK05671         66 QVQLAFFAAG   75 (336)
T ss_pred             CCCEEEEcCC
Confidence            9999999753

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=96.09  E-value=0.026  Score=52.94  Aligned_cols=73  Identities=19%  Similarity=0.325  Sum_probs=44.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      .++||+|+||+|++|..++..|..++.-    ..++.++....+    .|...+...      ..+.+..-..++++++|
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP----~~~l~~las~rs----aGk~~~~~~------~~~~v~~~~~~~~~~~D   71 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFP----YSSLKMLASARS----AGKKVTFEG------RDYTVEELTEDSFDGVD   71 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCC----cceEEEEEccCC----CCCeeeecC------ceeEEEeCCHHHHcCCC
Confidence            5689999999999999999888765421    126666644322    122222211      12233322235678999


Q ss_pred             EEEEeCC
Q 022227           84 IAVMVGG   90 (300)
Q Consensus        84 vVi~~ag   90 (300)
                      +||++++
T Consensus        72 ~vf~a~p   78 (344)
T PLN02383         72 IALFSAG   78 (344)
T ss_pred             EEEECCC
Confidence            9999865

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=96.07  E-value=0.024  Score=52.98  Aligned_cols=75  Identities=23%  Similarity=0.278  Sum_probs=45.0

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      -++.+||+|+||+|.+|..++..|.++..    ...++.++-...+    .|....+..      ..+.+......++++
T Consensus         1 ~~~~~~vaIvGATG~vG~ellrlL~~~~h----P~~~l~~laS~~s----aG~~~~~~~------~~~~v~~~~~~~~~~   66 (336)
T PRK08040          1 MSEGWNIALLGATGAVGEALLELLAERQF----PVGELYALASEES----AGETLRFGG------KSVTVQDAAEFDWSQ   66 (336)
T ss_pred             CCCCCEEEEEccCCHHHHHHHHHHhcCCC----CceEEEEEEccCc----CCceEEECC------cceEEEeCchhhccC
Confidence            03568999999999999999998887422    0127777754321    222222211      123333222344589


Q ss_pred             CcEEEEeCC
Q 022227           82 VNIAVMVGG   90 (300)
Q Consensus        82 aDvVi~~ag   90 (300)
                      +|+||++++
T Consensus        67 ~Dvvf~a~p   75 (336)
T PRK08040         67 AQLAFFVAG   75 (336)
T ss_pred             CCEEEECCC
Confidence            999999764

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.06  E-value=0.021  Score=51.11  Aligned_cols=69  Identities=13%  Similarity=0.108  Sum_probs=44.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+|+| +|.+|+.++..|...+. .   ...+.++|.+  .++++.    +.+..    ..+....+..+.++++|+|
T Consensus         1 m~IgiIG-~G~mG~aia~~L~~~g~-~---~~~i~v~~r~--~~~~~~----l~~~~----~~~~~~~~~~~~~~~aDvV   65 (258)
T PRK06476          1 MKIGFIG-TGAITEAMVTGLLTSPA-D---VSEIIVSPRN--AQIAAR----LAERF----PKVRIAKDNQAVVDRSDVV   65 (258)
T ss_pred             CeEEEEC-cCHHHHHHHHHHHhCCC-C---hheEEEECCC--HHHHHH----HHHHc----CCceEeCCHHHHHHhCCEE
Confidence            4899999 89999999999987753 1   1146677764  243332    21110    0123345666778899999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++.
T Consensus        66 ilav   69 (258)
T PRK06476         66 FLAV   69 (258)
T ss_pred             EEEe
Confidence            9984

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=96.06  E-value=0.069  Score=48.16  Aligned_cols=70  Identities=20%  Similarity=0.246  Sum_probs=47.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      ++||++|| +|++|+.++..|+..+...   +.+|...|.++  +++.    ++.+.. ..  .  .+++..++...+|+
T Consensus         1 ~~~IgfIG-~G~Mg~Ai~~gl~~~g~~~---~~~I~v~~~~~--e~~~----~l~~~~-g~--~--~~~~~~~~~~~adv   65 (266)
T COG0345           1 MMKIGFIG-AGNMGEAILSGLLKSGALP---PEEIIVTNRSE--EKRA----ALAAEY-GV--V--TTTDNQEAVEEADV   65 (266)
T ss_pred             CceEEEEc-cCHHHHHHHHHHHhcCCCC---cceEEEeCCCH--HHHH----HHHHHc-CC--c--ccCcHHHHHhhCCE
Confidence            36999999 7999999999999887422   22677777753  3332    222211 11  1  15566788899999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      ||++.
T Consensus        66 v~Lav   70 (266)
T COG0345          66 VFLAV   70 (266)
T ss_pred             EEEEe
Confidence            99984

>PRK09620 hypothetical protein; Provisional

Probab=96.04  E-value=0.019  Score=50.79  Aligned_cols=35  Identities=20%  Similarity=0.199  Sum_probs=29.5

Q ss_pred             CCcEEEEEcCC----------------ChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAA----------------GQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAa----------------G~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      +.+||.||+|.                |++|++++..|+.+|.       +|+++|..
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga-------~V~li~g~   52 (229)
T PRK09620          2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGA-------HVIYLHGY   52 (229)
T ss_pred             CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCC-------eEEEEeCC
Confidence            45699999876                9999999999999875       78888853

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.02  E-value=0.027  Score=52.60  Aligned_cols=71  Identities=21%  Similarity=0.340  Sum_probs=43.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||+|+||+|++|..++..|.+++.    ...+++.+-..++    .+...++..      ..+........+++++|+|
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~h----p~~~l~~l~s~~~----~g~~l~~~g------~~i~v~d~~~~~~~~vDvV   67 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNF----PVDKLRLLASARS----AGKELSFKG------KELKVEDLTTFDFSGVDIA   67 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC----CcceEEEEEcccc----CCCeeeeCC------ceeEEeeCCHHHHcCCCEE
Confidence            6999999999999999998887542    1126666644321    122222211      1233322223457899999


Q ss_pred             EEeCC
Q 022227           86 VMVGG   90 (300)
Q Consensus        86 i~~ag   90 (300)
                      |++.|
T Consensus        68 f~A~g   72 (334)
T PRK14874         68 LFSAG   72 (334)
T ss_pred             EECCC
Confidence            99864

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.02  E-value=0.031  Score=49.96  Aligned_cols=119  Identities=18%  Similarity=0.258  Sum_probs=69.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhc----ccCCCCCCeEEEEEecCC----chhhhhhhhhhhhhhccCCcccEEEeCChhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARG----VMLGTDQPVILHMLDIPP----AAEALNGVKMELVDAAFPLLKGVVATTDAVE   77 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~----~~~~~~~~~~l~L~D~~~----~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~   77 (300)
                      .||++.| +|..|..++..|+..    |+-.++-...+.|+|.+.    +.+.+......+.+...+    .....++.+
T Consensus        26 ~riv~~G-AGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~----~~~~~~L~e  100 (255)
T PF03949_consen   26 QRIVFFG-AGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNP----EKDWGSLLE  100 (255)
T ss_dssp             -EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSST----TT--SSHHH
T ss_pred             cEEEEeC-CChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcc----cccccCHHH
Confidence            5999999 799999999988765    651000001699999753    111222122222221111    111148899


Q ss_pred             hcCCC--cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh---hHHHHHHHH
Q 022227           78 ACTGV--NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN---TNALILKEF  144 (300)
Q Consensus        78 a~~~a--DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~---~~~~~~~~~  144 (300)
                      +++++  |++|=+.+.+   |           -+.+++++.|.+++. ..+|.-.|||..   ....-+.+.
T Consensus       101 av~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~~e-rPIIF~LSNPt~~aE~~peda~~~  157 (255)
T PF03949_consen  101 AVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKHNE-RPIIFPLSNPTPKAECTPEDAYEW  157 (255)
T ss_dssp             HHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHHSS-SEEEEE-SSSCGGSSS-HHHHHHT
T ss_pred             HHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhccCC-CCEEEECCCCCCcccCCHHHHHhh
Confidence            99999  9988776543   2           223578888889886 567888899965   333444443

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.01  E-value=0.014  Score=51.90  Aligned_cols=74  Identities=23%  Similarity=0.307  Sum_probs=47.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      ++|+|+||+|++|++++..|+..+.       +++..-.++  +++....   .... ....++.....+..+++|.|.+
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~-------~v~~~~r~~--~~~~~~~---~~v~-~~~~d~~~~~~l~~a~~G~~~~   67 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGH-------EVRAAVRNP--EAAAALA---GGVE-VVLGDLRDPKSLVAGAKGVDGV   67 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCC-------EEEEEEeCH--HHHHhhc---CCcE-EEEeccCCHhHHHHHhccccEE
Confidence            5899999999999999999998764       555554432  3332221   0100 0112222334678889999999


Q ss_pred             EEeCCCC
Q 022227           86 VMVGGFP   92 (300)
Q Consensus        86 i~~ag~~   92 (300)
                      +++.+..
T Consensus        68 ~~i~~~~   74 (275)
T COG0702          68 LLISGLL   74 (275)
T ss_pred             EEEeccc
Confidence            9987644

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=95.99  E-value=0.092  Score=45.44  Aligned_cols=119  Identities=17%  Similarity=0.198  Sum_probs=72.8

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhh----------hhhhhhhccCCcccEE
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGV----------KMELVDAAFPLLKGVV   70 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~----------~~dl~~~~~~~~~~v~   70 (300)
                      |+.....|.|+||+.-||..++..+.+.|-       +|.+..++  +++|...          ++|+.|.....  .  
T Consensus         1 mk~tgnTiLITGG~sGIGl~lak~f~elgN-------~VIi~gR~--e~~L~e~~~~~p~~~t~v~Dv~d~~~~~--~--   67 (245)
T COG3967           1 MKTTGNTILITGGASGIGLALAKRFLELGN-------TVIICGRN--EERLAEAKAENPEIHTEVCDVADRDSRR--E--   67 (245)
T ss_pred             CcccCcEEEEeCCcchhhHHHHHHHHHhCC-------EEEEecCc--HHHHHHHHhcCcchheeeecccchhhHH--H--
Confidence            777788999999999999999999988653       67777775  4555432          22222221000  0  


Q ss_pred             EeCChhhhcCCCcEEEEeCCCCCCCCCc-----H---HHHHHhh----HHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           71 ATTDAVEACTGVNIAVMVGGFPRKEGME-----R---KDVMSKN----VSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        71 ~~~~~~~a~~~aDvVi~~ag~~~~~g~~-----r---~dl~~~N----~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                      .-.-..+..-+-+++|..||+.|..+.+     .   .+.+..|    +.....+.+.+.+.  |++-+|++|+=.
T Consensus        68 lvewLkk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q--~~a~IInVSSGL  141 (245)
T COG3967          68 LVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQ--PEATIINVSSGL  141 (245)
T ss_pred             HHHHHHhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCceEEEecccc
Confidence            0001223345679999999997754322     1   1223344    45556666766665  367799998643

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=95.97  E-value=0.015  Score=53.31  Aligned_cols=63  Identities=24%  Similarity=0.369  Sum_probs=44.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||++|| .|.+|+.++..|++.|+       ++.++|+++.   .+    ++...      ......+..++.+++|+|
T Consensus         1 m~Ig~IG-lG~MG~~ma~~L~~~G~-------~v~v~~~~~~---~~----~~~~~------g~~~~~s~~~~~~~advV   59 (292)
T PRK15059          1 MKLGFIG-LGIMGTPMAINLARAGH-------QLHVTTIGPV---AD----ELLSL------GAVSVETARQVTEASDII   59 (292)
T ss_pred             CeEEEEc-cCHHHHHHHHHHHHCCC-------eEEEEeCCHh---HH----HHHHc------CCeecCCHHHHHhcCCEE
Confidence            3899999 89999999999998874       6788887531   11    12111      112234566778999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++-
T Consensus        60 i~~v   63 (292)
T PRK15059         60 FIMV   63 (292)
T ss_pred             EEeC
Confidence            9973

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=95.92  E-value=0.072  Score=48.06  Aligned_cols=67  Identities=19%  Similarity=0.261  Sum_probs=43.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeE-EEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI-LHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~-l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      +||+|+| .|.+|..++..|...+.     ..+ +.++|.++  ++++.    +.+..     .....++.++.+.++|+
T Consensus         2 mrIgIIG-~G~iG~~ia~~l~~~~~-----~~elv~v~d~~~--~~a~~----~a~~~-----~~~~~~~~~ell~~~Dv   64 (265)
T PRK13304          2 LKIGIVG-CGAIASLITKAILSGRI-----NAELYAFYDRNL--EKAEN----LASKT-----GAKACLSIDELVEDVDL   64 (265)
T ss_pred             CEEEEEC-ccHHHHHHHHHHHcCCC-----CeEEEEEECCCH--HHHHH----HHHhc-----CCeeECCHHHHhcCCCE
Confidence            6999999 79999999988876431     123 56788753  33332    21110     11234466676789999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      |++++
T Consensus        65 Vvi~a   69 (265)
T PRK13304         65 VVECA   69 (265)
T ss_pred             EEEcC
Confidence            99986

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.91  E-value=0.031  Score=47.17  Aligned_cols=33  Identities=30%  Similarity=0.565  Sum_probs=28.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      ||+|+| +|.+|+.++..|+..|+ +     +++|+|.+.
T Consensus         1 ~VlViG-~GglGs~ia~~La~~Gv-g-----~i~lvD~D~   33 (174)
T cd01487           1 KVGIAG-AGGLGSNIAVLLARSGV-G-----NLKLVDFDV   33 (174)
T ss_pred             CEEEEC-cCHHHHHHHHHHHHcCC-C-----eEEEEeCCE
Confidence            689999 79999999999998886 3     699999753

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07574 formate dehydrogenase; Provisional

Probab=95.90  E-value=0.055  Score=51.50  Aligned_cols=66  Identities=21%  Similarity=0.237  Sum_probs=45.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..++|+|+| .|.||+.++..|..-|+       +|+.+|......       +.....     .++...++.+.++.||
T Consensus       191 ~gktVGIvG-~G~IG~~vA~~l~~fG~-------~V~~~dr~~~~~-------~~~~~~-----g~~~~~~l~ell~~aD  250 (385)
T PRK07574        191 EGMTVGIVG-AGRIGLAVLRRLKPFDV-------KLHYTDRHRLPE-------EVEQEL-----GLTYHVSFDSLVSVCD  250 (385)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEECCCCCch-------hhHhhc-----CceecCCHHHHhhcCC
Confidence            347999999 89999999999886554       788999753111       011000     1122346888999999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +|++..
T Consensus       251 vV~l~l  256 (385)
T PRK07574        251 VVTIHC  256 (385)
T ss_pred             EEEEcC
Confidence            999975

>PLN02712 arogenate dehydrogenase

Probab=95.90  E-value=0.12  Score=52.87  Aligned_cols=65  Identities=15%  Similarity=0.271  Sum_probs=43.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC-CC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT-GV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~-~a   82 (300)
                      +++||+||| .|.+|.+++..|...|.       +|..+|.+.  +. + .+.++         .+...++..+.++ ++
T Consensus       368 ~~~kIgIIG-lG~mG~slA~~L~~~G~-------~V~~~dr~~--~~-~-~a~~~---------Gv~~~~~~~el~~~~a  426 (667)
T PLN02712        368 SKLKIAIVG-FGNFGQFLAKTMVKQGH-------TVLAYSRSD--YS-D-EAQKL---------GVSYFSDADDLCEEHP  426 (667)
T ss_pred             CCCEEEEEe-cCHHHHHHHHHHHHCcC-------EEEEEECCh--HH-H-HHHHc---------CCeEeCCHHHHHhcCC
Confidence            458999999 89999999999987653       788898863  11 1 11111         1122345556565 58


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |+||++.
T Consensus       427 DvVILav  433 (667)
T PLN02712        427 EVILLCT  433 (667)
T ss_pred             CEEEECC
Confidence            9999983

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.88  E-value=0.062  Score=50.33  Aligned_cols=35  Identities=31%  Similarity=0.507  Sum_probs=30.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      +..||+|+| +|.+|+.++..|+..|+ +     ++.|+|.+
T Consensus        23 ~~~~VlVvG-~GglGs~va~~La~aGv-g-----~i~lvD~D   57 (339)
T PRK07688         23 REKHVLIIG-AGALGTANAEMLVRAGV-G-----KVTIVDRD   57 (339)
T ss_pred             cCCcEEEEC-CCHHHHHHHHHHHHcCC-C-----eEEEEeCC
Confidence            346999999 79999999999998886 4     79999975

>PRK08291 ectoine utilization protein EutC; Validated

Probab=95.87  E-value=0.056  Score=50.34  Aligned_cols=74  Identities=20%  Similarity=0.204  Sum_probs=51.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHh-cccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~-~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      ..++|+|+| +|..|...+..+.. .+. .     ++.+++++  .++++..+.++.+.   ....+....+..++++++
T Consensus       131 ~~~~v~IiG-aG~~a~~~~~al~~~~~~-~-----~V~v~~R~--~~~a~~l~~~~~~~---~g~~v~~~~d~~~al~~a  198 (330)
T PRK08291        131 DASRAAVIG-AGEQARLQLEALTLVRPI-R-----EVRVWARD--AAKAEAYAADLRAE---LGIPVTVARDVHEAVAGA  198 (330)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhcCCC-C-----EEEEEcCC--HHHHHHHHHHHhhc---cCceEEEeCCHHHHHccC
Confidence            346899999 79999988777764 332 2     79999986  45666555544321   112344566788999999


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |+||.+-
T Consensus       199 DiVi~aT  205 (330)
T PRK08291        199 DIIVTTT  205 (330)
T ss_pred             CEEEEee
Confidence            9998764

>PRK13243 glyoxylate reductase; Reviewed

Probab=95.86  E-value=0.032  Score=52.05  Aligned_cols=64  Identities=13%  Similarity=-0.042  Sum_probs=44.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..++|+|+| .|.||+.++..|...|+       +|..+|.....  .  .  +....       +. ..++.+.+++||
T Consensus       149 ~gktvgIiG-~G~IG~~vA~~l~~~G~-------~V~~~d~~~~~--~--~--~~~~~-------~~-~~~l~ell~~aD  206 (333)
T PRK13243        149 YGKTIGIIG-FGRIGQAVARRAKGFGM-------RILYYSRTRKP--E--A--EKELG-------AE-YRPLEELLRESD  206 (333)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCC-------EEEEECCCCCh--h--h--HHHcC-------CE-ecCHHHHHhhCC
Confidence            347999999 89999999999886654       78889975321  1  1  00110       11 236788899999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +|+++.
T Consensus       207 iV~l~l  212 (333)
T PRK13243        207 FVSLHV  212 (333)
T ss_pred             EEEEeC
Confidence            999985

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.85  E-value=0.063  Score=46.46  Aligned_cols=70  Identities=11%  Similarity=0.079  Sum_probs=42.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      .+.+||+|+| +|.+|...+..|+..|.       ++++++.... +.+.    ++.+.. .  -......-.++.+.++
T Consensus         8 l~~k~vLVIG-gG~va~~ka~~Ll~~ga-------~V~VIs~~~~-~~l~----~l~~~~-~--i~~~~~~~~~~~l~~a   71 (202)
T PRK06718          8 LSNKRVVIVG-GGKVAGRRAITLLKYGA-------HIVVISPELT-ENLV----KLVEEG-K--IRWKQKEFEPSDIVDA   71 (202)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEcCCCC-HHHH----HHHhCC-C--EEEEecCCChhhcCCc
Confidence            3567999999 69999999999988763       6888875321 1111    222111 0  0111111234668999


Q ss_pred             cEEEEe
Q 022227           83 NIAVMV   88 (300)
Q Consensus        83 DvVi~~   88 (300)
                      |+||.+
T Consensus        72 dlViaa   77 (202)
T PRK06718         72 FLVIAA   77 (202)
T ss_pred             eEEEEc
Confidence            988876

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=95.84  E-value=0.048  Score=50.46  Aligned_cols=64  Identities=11%  Similarity=0.124  Sum_probs=44.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..++|+|+| .|.||+.++..|..-|+       ++..+|...  +...+    +...        ....++.+.+++||
T Consensus       135 ~g~tvgIvG-~G~IG~~vA~~l~afG~-------~V~~~~~~~--~~~~~----~~~~--------~~~~~l~e~l~~aD  192 (312)
T PRK15469        135 EDFTIGILG-AGVLGSKVAQSLQTWGF-------PLRCWSRSR--KSWPG----VQSF--------AGREELSAFLSQTR  192 (312)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEeCCC--CCCCC----ceee--------cccccHHHHHhcCC
Confidence            347999999 89999999999986554       788898743  11111    1100        01236788999999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +|+++.
T Consensus       193 vvv~~l  198 (312)
T PRK15469        193 VLINLL  198 (312)
T ss_pred             EEEECC
Confidence            999974

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=95.84  E-value=0.05  Score=50.05  Aligned_cols=74  Identities=7%  Similarity=-0.004  Sum_probs=52.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ...+++|+| +|..+.+.+..++.-.-+.     +++++|+++  ++++..+.++.+.   ...++....+.++++++||
T Consensus       116 da~~l~iiG-aG~QA~~~~~a~~~v~~i~-----~v~v~~r~~--~~a~~f~~~~~~~---~~~~v~~~~~~~eav~~aD  184 (301)
T PRK06407        116 NVENFTIIG-SGFQAETQLEGMASVYNPK-----RIRVYSRNF--DHARAFAERFSKE---FGVDIRPVDNAEAALRDAD  184 (301)
T ss_pred             CCcEEEEEC-CcHHHHHHHHHHHhcCCCC-----EEEEECCCH--HHHHHHHHHHHHh---cCCcEEEeCCHHHHHhcCC
Confidence            457899999 7999998877766521111     899999864  5666565555542   1235666678999999999


Q ss_pred             EEEEe
Q 022227           84 IAVMV   88 (300)
Q Consensus        84 vVi~~   88 (300)
                      +|+.+
T Consensus       185 IV~ta  189 (301)
T PRK06407        185 TITSI  189 (301)
T ss_pred             EEEEe
Confidence            98864

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=95.81  E-value=0.53  Score=43.29  Aligned_cols=37  Identities=30%  Similarity=0.434  Sum_probs=27.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeE-EEEEecCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI-LHMLDIPP   46 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~-l~L~D~~~   46 (300)
                      |+++||+|+| +|++|..++..+.....      ++ ..++|+++
T Consensus         2 m~klrVAIIG-tG~IGt~hm~~l~~~~~------velvAVvdid~   39 (302)
T PRK08300          2 MSKLKVAIIG-SGNIGTDLMIKILRSEH------LEPGAMVGIDP   39 (302)
T ss_pred             CCCCeEEEEc-CcHHHHHHHHHHhcCCC------cEEEEEEeCCh
Confidence            4568999999 89999998877775322      24 45778864

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=95.79  E-value=0.038  Score=53.20  Aligned_cols=73  Identities=21%  Similarity=0.234  Sum_probs=48.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +..+|+|+| +|.+|..++..|...|..      +++++|.+.  +++...+..+..       ......+..+++.++|
T Consensus       179 ~~~~VlViG-aG~iG~~~a~~L~~~G~~------~V~v~~rs~--~ra~~la~~~g~-------~~i~~~~l~~~l~~aD  242 (417)
T TIGR01035       179 KGKKALLIG-AGEMGELVAKHLLRKGVG------KILIANRTY--ERAEDLAKELGG-------EAVKFEDLEEYLAEAD  242 (417)
T ss_pred             cCCEEEEEC-ChHHHHHHHHHHHHCCCC------EEEEEeCCH--HHHHHHHHHcCC-------eEeeHHHHHHHHhhCC
Confidence            347999999 699999999999876642      688998863  343333222211       1111135667889999


Q ss_pred             EEEEeCCCC
Q 022227           84 IAVMVGGFP   92 (300)
Q Consensus        84 vVi~~ag~~   92 (300)
                      +||.+.+.+
T Consensus       243 vVi~aT~s~  251 (417)
T TIGR01035       243 IVISSTGAP  251 (417)
T ss_pred             EEEECCCCC
Confidence            999986544

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=95.76  E-value=0.055  Score=50.04  Aligned_cols=72  Identities=25%  Similarity=0.218  Sum_probs=48.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHh-cccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~-~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      .+.+++|+| +|..+.+.+..++. .+ +.     +|.++|++  .++++..+.++.+    +...+....+.++++++|
T Consensus       127 ~~~~l~viG-aG~QA~~~~~a~~~~~~-i~-----~v~v~~r~--~~~~~~~~~~~~~----~~~~v~~~~~~~~av~~a  193 (313)
T PF02423_consen  127 DARTLGVIG-AGVQARWHLRALAAVRP-IK-----EVRVYSRS--PERAEAFAARLRD----LGVPVVAVDSAEEAVRGA  193 (313)
T ss_dssp             T--EEEEE---SHHHHHHHHHHHHHS---S-----EEEEE-SS--HHHHHHHHHHHHC----CCTCEEEESSHHHHHTTS
T ss_pred             CCceEEEEC-CCHHHHHHHHHHHHhCC-ce-----EEEEEccC--hhHHHHHHHhhcc----ccccceeccchhhhcccC
Confidence            456899999 79999988877664 33 22     89999986  4666666666655    244666777899999999


Q ss_pred             cEEEEe
Q 022227           83 NIAVMV   88 (300)
Q Consensus        83 DvVi~~   88 (300)
                      |+|+.+
T Consensus       194 Dii~ta  199 (313)
T PF02423_consen  194 DIIVTA  199 (313)
T ss_dssp             SEEEE-
T ss_pred             CEEEEc
Confidence            988764

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.75  E-value=0.055  Score=50.31  Aligned_cols=74  Identities=14%  Similarity=0.123  Sum_probs=49.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHh-cccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~-~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      ...+++|+| +|..|...+..++. .++ .     ++.++|+++  ++++..+.++.+.   ...++....+.+++++++
T Consensus       126 ~~~~v~iiG-aG~~a~~~~~al~~~~~~-~-----~v~v~~r~~--~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~a  193 (325)
T PRK08618        126 DAKTLCLIG-TGGQAKGQLEAVLAVRDI-E-----RVRVYSRTF--EKAYAFAQEIQSK---FNTEIYVVNSADEAIEEA  193 (325)
T ss_pred             CCcEEEEEC-CcHHHHHHHHHHHhcCCc-c-----EEEEECCCH--HHHHHHHHHHHHh---cCCcEEEeCCHHHHHhcC
Confidence            357899999 79999887766653 232 2     799999863  5555554444321   112344456778899999


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |+||.+-
T Consensus       194 DiVi~aT  200 (325)
T PRK08618        194 DIIVTVT  200 (325)
T ss_pred             CEEEEcc
Confidence            9988763

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=95.74  E-value=0.039  Score=53.86  Aligned_cols=97  Identities=15%  Similarity=0.119  Sum_probs=55.7

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhh---hcCCCc
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE---ACTGVN   83 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~---a~~~aD   83 (300)
                      +|+||| .|.+|.+++..|+..|.       +|.++|+++  ++++....+....     ..+....+..+   .++.+|
T Consensus         1 ~IG~IG-LG~MG~~mA~nL~~~G~-------~V~v~drt~--~~~~~l~~~~~~g-----~~~~~~~s~~e~v~~l~~~d   65 (467)
T TIGR00873         1 DIGVIG-LAVMGSNLALNMADHGF-------TVSVYNRTP--EKTDEFLAEHAKG-----KKIVGAYSIEEFVQSLERPR   65 (467)
T ss_pred             CEEEEe-eHHHHHHHHHHHHhcCC-------eEEEEeCCH--HHHHHHHhhccCC-----CCceecCCHHHHHhhcCCCC
Confidence            489999 89999999999998875       799999863  4443221110000     01222223333   456789


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCc
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                      +||++.-    ++           +.+.++.+.+..+-.++.++|-.||.
T Consensus        66 vIil~v~----~~-----------~~v~~Vi~~l~~~L~~g~iIID~gns  100 (467)
T TIGR00873        66 KIMLMVK----AG-----------APVDAVINQLLPLLEKGDIIIDGGNS  100 (467)
T ss_pred             EEEEECC----Cc-----------HHHHHHHHHHHhhCCCCCEEEECCCc
Confidence            8888741    11           22223334444443335567778773

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.72  E-value=0.085  Score=49.84  Aligned_cols=78  Identities=19%  Similarity=0.210  Sum_probs=52.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhh------hh--hhhhhc--cCCcccEEEeCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGV------KM--ELVDAA--FPLLKGVVATTD   74 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~------~~--dl~~~~--~~~~~~v~~~~~   74 (300)
                      .++|+|+| .|+||..+|-.++..|.       .+.=+|+++  .+.+..      ..  ++....  .-...++..|++
T Consensus         9 ~~~I~ViG-LGYVGLPlA~~fA~~G~-------~ViG~DIn~--~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd   78 (436)
T COG0677           9 SATIGVIG-LGYVGLPLAAAFASAGF-------KVIGVDINQ--KKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTD   78 (436)
T ss_pred             ceEEEEEc-cccccHHHHHHHHHcCC-------ceEeEeCCH--HHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecC
Confidence            48999999 99999999999998875       688999974  332211      00  111100  011356788888


Q ss_pred             hhhhcCCCcEEEEeCCCCC
Q 022227           75 AVEACTGVNIAVMVGGFPR   93 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~   93 (300)
                      . +.++.||++|++.=.|-
T Consensus        79 ~-~~l~~~dv~iI~VPTPl   96 (436)
T COG0677          79 P-EELKECDVFIICVPTPL   96 (436)
T ss_pred             h-hhcccCCEEEEEecCCc
Confidence            6 55789999999864443

>PRK08605 D-lactate dehydrogenase; Validated

Probab=95.71  E-value=0.037  Score=51.68  Aligned_cols=63  Identities=27%  Similarity=0.323  Sum_probs=43.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .+||+|+| .|.+|+.++..|+. + ++    .++..+|..... .       ....       +...+++.+++++||+
T Consensus       146 g~~VgIIG-~G~IG~~vA~~L~~-~-~g----~~V~~~d~~~~~-~-------~~~~-------~~~~~~l~ell~~aDv  203 (332)
T PRK08605        146 DLKVAVIG-TGRIGLAVAKIFAK-G-YG----SDVVAYDPFPNA-K-------AATY-------VDYKDTIEEAVEGADI  203 (332)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHh-c-CC----CEEEEECCCccH-h-------HHhh-------ccccCCHHHHHHhCCE
Confidence            57999999 79999999999853 2 22    278888875311 1       0010       1123467889999999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      |+++.
T Consensus       204 Ivl~l  208 (332)
T PRK08605        204 VTLHM  208 (332)
T ss_pred             EEEeC
Confidence            99985

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.70  E-value=0.044  Score=50.50  Aligned_cols=72  Identities=14%  Similarity=0.064  Sum_probs=50.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHh-cccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~-~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      ...+|+|+| +|..|...+..++. .+.      .++.++|++  .++++..+.++....    ..+. ..+.++++.++
T Consensus       124 ~~~~v~IiG-aG~qa~~~~~al~~~~~~------~~v~v~~r~--~~~a~~~a~~~~~~~----~~~~-~~~~~~av~~a  189 (304)
T PRK07340        124 PPGDLLLIG-TGVQARAHLEAFAAGLPV------RRVWVRGRT--AASAAAFCAHARALG----PTAE-PLDGEAIPEAV  189 (304)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHhCCC------CEEEEEcCC--HHHHHHHHHHHHhcC----CeeE-ECCHHHHhhcC
Confidence            457999999 79999999988875 332      179999986  356665555554211    1222 35678899999


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |+||.+-
T Consensus       190 DiVitaT  196 (304)
T PRK07340        190 DLVVTAT  196 (304)
T ss_pred             CEEEEcc
Confidence            9998863

>PRK07589 ornithine cyclodeaminase; Validated

Probab=95.68  E-value=0.061  Score=50.46  Aligned_cols=74  Identities=19%  Similarity=0.200  Sum_probs=51.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ...+++|+| +|..+.+.+..++.-.-+     .++.++++.+  ++++..+.++.+.    ..++...++.++++++||
T Consensus       128 da~~l~iiG-aG~QA~~~l~a~~~vr~i-----~~V~v~~r~~--~~a~~~~~~~~~~----~~~v~~~~~~~~av~~AD  195 (346)
T PRK07589        128 DSRTMALIG-NGAQSEFQALAFKALLGI-----EEIRLYDIDP--AATAKLARNLAGP----GLRIVACRSVAEAVEGAD  195 (346)
T ss_pred             CCcEEEEEC-CcHHHHHHHHHHHHhCCc-----eEEEEEeCCH--HHHHHHHHHHHhc----CCcEEEeCCHHHHHhcCC
Confidence            457899999 799998877666542111     2899999864  5666555555431    124556678999999999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +|+.+-
T Consensus       196 IIvtaT  201 (346)
T PRK07589        196 IITTVT  201 (346)
T ss_pred             EEEEec
Confidence            988753

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=95.68  E-value=0.19  Score=46.48  Aligned_cols=68  Identities=25%  Similarity=0.241  Sum_probs=44.9

Q ss_pred             cEEEEEcCCCh--------------------HHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh-hhhhhhhhhccC
Q 022227            6 VRVLVTGAAGQ--------------------IGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN-GVKMELVDAAFP   64 (300)
Q Consensus         6 ~kV~IiGAaG~--------------------vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~-g~~~dl~~~~~~   64 (300)
                      |||.|-| +|+                    -|+.+|..|+..|+       +|+++|+++  ++++ .....+.+.   
T Consensus         1 ~~~~~~g-~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh-------eV~V~Drnr--sa~e~e~~e~Laea---   67 (341)
T TIGR01724         1 MKVSVYG-AGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH-------DVVLAEPNR--EFMSDDLWKKVEDA---   67 (341)
T ss_pred             CeeEEec-CcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC-------EEEEEeCCh--hhhhhhhhHHHHHC---
Confidence            5888888 464                    37889999888775       799999863  2221 111223322   


Q ss_pred             CcccEEEeCChhhhcCCCcEEEEeC
Q 022227           65 LLKGVVATTDAVEACTGVNIAVMVG   89 (300)
Q Consensus        65 ~~~~v~~~~~~~~a~~~aDvVi~~a   89 (300)
                         .....++..++.+++|+||.+-
T Consensus        68 ---GA~~AaS~aEAAa~ADVVIL~L   89 (341)
T TIGR01724        68 ---GVKVVSDDKEAAKHGEIHVLFT   89 (341)
T ss_pred             ---CCeecCCHHHHHhCCCEEEEec
Confidence               1233456789999999999983

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.68  E-value=0.067  Score=49.48  Aligned_cols=72  Identities=19%  Similarity=0.198  Sum_probs=49.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHh-cccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~-~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      ...+|+|+| +|.+|...+..++. .+. .     +|.++++.+  ++++..+.++.+.    ...+....+.++++++|
T Consensus       124 ~~~~v~iiG-~G~~a~~~~~al~~~~~~-~-----~V~V~~Rs~--~~a~~~a~~~~~~----g~~~~~~~~~~~av~~a  190 (314)
T PRK06141        124 DASRLLVVG-TGRLASLLALAHASVRPI-K-----QVRVWGRDP--AKAEALAAELRAQ----GFDAEVVTDLEAAVRQA  190 (314)
T ss_pred             CCceEEEEC-CcHHHHHHHHHHHhcCCC-C-----EEEEEcCCH--HHHHHHHHHHHhc----CCceEEeCCHHHHHhcC
Confidence            457999999 79999999876654 332 1     799999863  5565555554321    11344556778899999


Q ss_pred             cEEEEe
Q 022227           83 NIAVMV   88 (300)
Q Consensus        83 DvVi~~   88 (300)
                      |+|+.+
T Consensus       191 DIVi~a  196 (314)
T PRK06141        191 DIISCA  196 (314)
T ss_pred             CEEEEe
Confidence            998654

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=95.67  E-value=0.12  Score=53.26  Aligned_cols=68  Identities=22%  Similarity=0.252  Sum_probs=45.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      .||+|+| +|.+|..++..|...|..     .+|..+|.++  ++++. +.+.  ..     .....++..++++++|+|
T Consensus         4 ~~I~IIG-~G~mG~ala~~l~~~G~~-----~~V~~~d~~~--~~~~~-a~~~--g~-----~~~~~~~~~~~~~~aDvV   67 (735)
T PRK14806          4 GRVVVIG-LGLIGGSFAKALRERGLA-----REVVAVDRRA--KSLEL-AVSL--GV-----IDRGEEDLAEAVSGADVI   67 (735)
T ss_pred             cEEEEEe-eCHHHHHHHHHHHhcCCC-----CEEEEEECCh--hHHHH-HHHC--CC-----CCcccCCHHHHhcCCCEE
Confidence            6899999 799999999999887631     1688899864  33321 1111  10     001233566778999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++.
T Consensus        68 ilav   71 (735)
T PRK14806         68 VLAV   71 (735)
T ss_pred             EECC
Confidence            9974

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.66  E-value=0.057  Score=46.68  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=30.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      ...||+|+| +|.+|+.++..|+..|+ +     ++.|+|.+
T Consensus        20 ~~~~VlviG-~GglGs~ia~~La~~Gv-~-----~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIG-AGGLGSPAALYLAGAGV-G-----TIVIVDDD   54 (202)
T ss_pred             cCCCEEEEC-CCHHHHHHHHHHHHcCC-C-----eEEEecCC
Confidence            356999999 79999999999998885 3     78999875

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=95.66  E-value=0.06  Score=49.02  Aligned_cols=60  Identities=22%  Similarity=0.375  Sum_probs=42.7

Q ss_pred             EEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEEEEeC
Q 022227           10 VTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVG   89 (300)
Q Consensus        10 IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvVi~~a   89 (300)
                      ||| .|.+|..++..|+..|.       ++.++|+++  ++++.    +...      .....++..++++++|+||++.
T Consensus         1 ~IG-lG~mG~~mA~~L~~~G~-------~V~v~dr~~--~~~~~----l~~~------g~~~~~s~~~~~~~advVil~v   60 (288)
T TIGR01692         1 FIG-LGNMGGPMAANLLKAGH-------PVRVFDLFP--DAVEE----AVAA------GAQAAASPAEAAEGADRVITML   60 (288)
T ss_pred             CCc-ccHhHHHHHHHHHhCCC-------eEEEEeCCH--HHHHH----HHHc------CCeecCCHHHHHhcCCEEEEeC
Confidence            578 89999999999998764       789999863  33322    2211      1223456778899999999984

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.64  E-value=0.048  Score=51.05  Aligned_cols=36  Identities=31%  Similarity=0.422  Sum_probs=30.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      +..||+|+| +|.+|+.++..|+..|+ +     ++.|+|.+.
T Consensus        23 ~~~~VlIiG-~GglGs~va~~La~aGv-g-----~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVG-AGALGAANAEALVRAGI-G-----KLTIADRDY   58 (338)
T ss_pred             cCCcEEEEC-CCHHHHHHHHHHHHcCC-C-----EEEEEcCCc
Confidence            346899999 79999999999999886 3     799999763

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.64  E-value=0.089  Score=50.69  Aligned_cols=66  Identities=20%  Similarity=0.149  Sum_probs=44.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ...+|+|+| .|.+|..++..|...|.       +|+.+|+++  .++....+   +..       .. .+..++++++|
T Consensus       211 ~Gk~VlViG-~G~IG~~vA~~lr~~Ga-------~ViV~d~dp--~ra~~A~~---~G~-------~v-~~l~eal~~aD  269 (425)
T PRK05476        211 AGKVVVVAG-YGDVGKGCAQRLRGLGA-------RVIVTEVDP--ICALQAAM---DGF-------RV-MTMEEAAELGD  269 (425)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEcCCc--hhhHHHHh---cCC-------Ee-cCHHHHHhCCC
Confidence            356899999 79999999999887664       789999864  22211111   111       11 14567889999


Q ss_pred             EEEEeCC
Q 022227           84 IAVMVGG   90 (300)
Q Consensus        84 vVi~~ag   90 (300)
                      +||.+.|
T Consensus       270 VVI~aTG  276 (425)
T PRK05476        270 IFVTATG  276 (425)
T ss_pred             EEEECCC
Confidence            9988754

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=95.63  E-value=0.064  Score=49.70  Aligned_cols=71  Identities=23%  Similarity=0.369  Sum_probs=44.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCe-EEEEEecCCchhhhhhhh-hhhhhhccCCcccEEEeC--ChhhhcC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPV-ILHMLDIPPAAEALNGVK-MELVDAAFPLLKGVVATT--DAVEACT   80 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~-~l~L~D~~~~~~~l~g~~-~dl~~~~~~~~~~v~~~~--~~~~a~~   80 (300)
                      ++||+|+||+|.||+.++..|.++..     ++ ++.++-..++    .|.. .++..-.      +.+..  ....+++
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f-----~~~~~~~~AS~rS----aG~~~~~f~~~~------~~v~~~~~~~~~~~   65 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHF-----PFEELVLLASARS----AGKKYIEFGGKS------IGVPEDAADEFVFS   65 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCC-----CcceEEEEecccc----cCCccccccCcc------ccCccccccccccc
Confidence            36899999999999999999887532     22 4666654332    2222 3333221      11111  1234577


Q ss_pred             CCcEEEEeCC
Q 022227           81 GVNIAVMVGG   90 (300)
Q Consensus        81 ~aDvVi~~ag   90 (300)
                      ++|+||.++|
T Consensus        66 ~~Divf~~ag   75 (334)
T COG0136          66 DVDIVFFAAG   75 (334)
T ss_pred             cCCEEEEeCc
Confidence            9999999985

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=95.61  E-value=0.11  Score=48.89  Aligned_cols=34  Identities=21%  Similarity=0.375  Sum_probs=26.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEE-EEecC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIP   45 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~-L~D~~   45 (300)
                      +||+|+||+|.+|..++..|.....      .+++ +++..
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~------~el~~l~~s~   35 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPE------VEITYLVSSR   35 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCC------ceEEEEeccc
Confidence            4899999999999999998885432      2566 66654

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.60  E-value=0.098  Score=50.24  Aligned_cols=66  Identities=15%  Similarity=0.097  Sum_probs=44.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ...+|+|+| .|.+|..++..+...|.       +++.+|+++  .++. .+..+  ..     .  . .+..++++++|
T Consensus       201 ~GktVvViG-~G~IG~~va~~ak~~Ga-------~ViV~d~d~--~R~~-~A~~~--G~-----~--~-~~~~e~v~~aD  259 (413)
T cd00401         201 AGKVAVVAG-YGDVGKGCAQSLRGQGA-------RVIVTEVDP--ICAL-QAAME--GY-----E--V-MTMEEAVKEGD  259 (413)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEECCh--hhHH-HHHhc--CC-----E--E-ccHHHHHcCCC
Confidence            346999999 79999999998887664       677788864  3332 11111  11     1  1 13457789999


Q ss_pred             EEEEeCC
Q 022227           84 IAVMVGG   90 (300)
Q Consensus        84 vVi~~ag   90 (300)
                      +||.+.|
T Consensus       260 VVI~atG  266 (413)
T cd00401         260 IFVTTTG  266 (413)
T ss_pred             EEEECCC
Confidence            9998765

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.55  E-value=0.11  Score=48.69  Aligned_cols=170  Identities=11%  Similarity=0.076  Sum_probs=85.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhh---hhh-hhhhccCCcccEEEe---------
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGV---KME-LVDAAFPLLKGVVAT---------   72 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~---~~d-l~~~~~~~~~~v~~~---------   72 (300)
                      ++|.+|||+||+|..++..|+.+--..     -+.|+--+ ++|.+...   ..+ ..+-......++++-         
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~~k-----v~cLVRA~-s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~l   74 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSDAK-----VICLVRAQ-SDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDL   74 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCCCc-----EEEEEecC-CHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccC
Confidence            378999999999999999988653211     34555444 32322211   111 101000001122211         


Q ss_pred             ---CChhhhcC-CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHC-CC
Q 022227           73 ---TDAVEACT-GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFA-PS  147 (300)
Q Consensus        73 ---~~~~~a~~-~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~-~~  147 (300)
                         ...+..+. ++|.|||.|...-- -..-..+...|+..+.++.+.....-+ .. +..+|. ..+.++..-... ..
T Consensus        75 GL~~~~~~~La~~vD~I~H~gA~Vn~-v~pYs~L~~~NVlGT~evlrLa~~gk~-Kp-~~yVSs-isv~~~~~~~~~~~~  150 (382)
T COG3320          75 GLSERTWQELAENVDLIIHNAALVNH-VFPYSELRGANVLGTAEVLRLAATGKP-KP-LHYVSS-ISVGETEYYSNFTVD  150 (382)
T ss_pred             CCCHHHHHHHhhhcceEEecchhhcc-cCcHHHhcCcchHhHHHHHHHHhcCCC-ce-eEEEee-eeeccccccCCCccc
Confidence               11223344 59999998764320 112245677899999999987765422 21 444443 322221100000 00


Q ss_pred             C----CC----CcE---EeeehhhHHHHHHHHHHHcCCCCCCeEEEEEec
Q 022227          148 I----PA----KNI---TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG  186 (300)
Q Consensus       148 ~----p~----~~i---~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G  186 (300)
                      +    |.    ...   ++-++--.+.+.+...+. |++..-+|.-.|.|
T Consensus       151 ~~~~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~g  199 (382)
T COG3320         151 FDEISPTRNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITG  199 (382)
T ss_pred             cccccccccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeec
Confidence            1    11    111   233566666666665555 88777776555445

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=95.54  E-value=0.079  Score=49.27  Aligned_cols=74  Identities=19%  Similarity=0.191  Sum_probs=51.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHh-cccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~-~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      ...+++|+| +|..+...+..|+. .++ .     ++.+++++.  ++++..+.++.+.   ...++....+.++++++|
T Consensus       128 ~~~~v~iiG-aG~qA~~~~~al~~~~~i-~-----~v~V~~R~~--~~a~~~a~~~~~~---~g~~v~~~~~~~~av~~a  195 (326)
T TIGR02992       128 DSSVVAIFG-AGMQARLQLEALTLVRDI-R-----SARIWARDS--AKAEALALQLSSL---LGIDVTAATDPRAAMSGA  195 (326)
T ss_pred             CCcEEEEEC-CCHHHHHHHHHHHHhCCc-c-----EEEEECCCH--HHHHHHHHHHHhh---cCceEEEeCCHHHHhccC
Confidence            346899999 79999998888864 332 1     699998863  5666555555321   112344556788899999


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |+|+.+-
T Consensus       196 DiVvtaT  202 (326)
T TIGR02992       196 DIIVTTT  202 (326)
T ss_pred             CEEEEec
Confidence            9998863

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK06823 ornithine cyclodeaminase; Validated

Probab=95.53  E-value=0.086  Score=48.83  Aligned_cols=73  Identities=16%  Similarity=0.063  Sum_probs=50.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      .+.+++|+| +|..+.+.+..++.-.-+     .+|.++|+.+  ++++..+..+.+.    ..++...++..+++++||
T Consensus       127 d~~~l~iiG-~G~qA~~~~~a~~~v~~i-----~~v~v~~r~~--~~a~~~~~~~~~~----~~~v~~~~~~~~av~~AD  194 (315)
T PRK06823        127 HVSAIGIVG-TGIQARMQLMYLKNVTDC-----RQLWVWGRSE--TALEEYRQYAQAL----GFAVNTTLDAAEVAHAAN  194 (315)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHhcCCC-----CEEEEECCCH--HHHHHHHHHHHhc----CCcEEEECCHHHHhcCCC
Confidence            457899999 899999888777653111     1899999864  5555544333321    224556678889999999


Q ss_pred             EEEEe
Q 022227           84 IAVMV   88 (300)
Q Consensus        84 vVi~~   88 (300)
                      +|+.+
T Consensus       195 IV~ta  199 (315)
T PRK06823        195 LIVTT  199 (315)
T ss_pred             EEEEe
Confidence            99875

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=95.52  E-value=0.033  Score=49.73  Aligned_cols=120  Identities=14%  Similarity=0.103  Sum_probs=71.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccC----CCCCCeEEEEEecCCc----hhhhhhhhhhhhhhccCCcccEEEeCChh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVML----GTDQPVILHMLDIPPA----AEALNGVKMELVDAAFPLLKGVVATTDAV   76 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~----~~~~~~~l~L~D~~~~----~~~l~g~~~dl~~~~~~~~~~v~~~~~~~   76 (300)
                      ..||++.| +|..|..++..|+..+.-    .+.-...++++|.+.-    ...+......+.+..    +.-....++.
T Consensus        25 d~riv~~G-AGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~----~~~~~~~~L~   99 (254)
T cd00762          25 EHKVLFNG-AGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFA----NPERESGDLE   99 (254)
T ss_pred             hcEEEEEC-cCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHc----CcccccCCHH
Confidence            36999999 799999999888764331    1100126899997530    111111111111111    1111235899


Q ss_pred             hhcC--CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh---hHHHHHHHH
Q 022227           77 EACT--GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN---TNALILKEF  144 (300)
Q Consensus        77 ~a~~--~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~---~~~~~~~~~  144 (300)
                      ++++  ++|+.|=+.+.+   |           -+.+++++.|.++++ ..+|.-.|||..   ....-+.+.
T Consensus       100 eav~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~-~PIIFaLSNPt~~aE~tpe~a~~~  157 (254)
T cd00762         100 DAVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEINE-RPVIFALSNPTSKAECTAEEAYTA  157 (254)
T ss_pred             HHHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhcCC-CCEEEECCCcCCccccCHHHHHhh
Confidence            9999  999988765543   2           123578888888886 467888899974   444454443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.52  E-value=0.46  Score=44.02  Aligned_cols=164  Identities=15%  Similarity=0.102  Sum_probs=92.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-----------cccEEE-
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-----------LKGVVA-   71 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-----------~~~v~~-   71 (300)
                      +.+.+.||||+.-||..++..|+.+|.       +|++..++.  ++.+..+.++.......           ...+.. 
T Consensus        34 ~~~~~vVTGansGIG~eta~~La~~Ga-------~Vv~~~R~~--~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~f  104 (314)
T KOG1208|consen   34 SGKVALVTGATSGIGFETARELALRGA-------HVVLACRNE--ERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKF  104 (314)
T ss_pred             CCcEEEEECCCCchHHHHHHHHHhCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHH
Confidence            446788999999999999999999883       688887753  44444444454311000           011110 


Q ss_pred             eCChhhhcCCCcEEEEeCCCCCCCCC---cH-HHHHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchh----hHHH
Q 022227           72 TTDAVEACTGVNIAVMVGGFPRKEGM---ER-KDVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPAN----TNAL  139 (300)
Q Consensus        72 ~~~~~~a~~~aDvVi~~ag~~~~~g~---~r-~dl~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~----~~~~  139 (300)
                      ..........-|+.|.-||+...+..   +- +..+..|.    -++..+.+.+++.+|  .+||++|+-.-    -+-.
T Consensus       105 a~~~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~--~RIV~vsS~~~~~~~~~~~  182 (314)
T KOG1208|consen  105 AEEFKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAP--SRIVNVSSILGGGKIDLKD  182 (314)
T ss_pred             HHHHHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCC--CCEEEEcCccccCccchhh
Confidence            01122334567999999998543322   11 12244453    455666677776654  58888886321    0001


Q ss_pred             HHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEE
Q 022227          140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN  181 (300)
Q Consensus       140 ~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~  181 (300)
                      +-.+..+.+...+.++.+.+...-+...+++++.-   +|..
T Consensus       183 l~~~~~~~~~~~~~Y~~SKla~~l~~~eL~k~l~~---~V~~  221 (314)
T KOG1208|consen  183 LSGEKAKLYSSDAAYALSKLANVLLANELAKRLKK---GVTT  221 (314)
T ss_pred             ccchhccCccchhHHHHhHHHHHHHHHHHHHHhhc---CceE
Confidence            11111011222224677788777788889988864   5553

>PLN03139 formate dehydrogenase; Provisional

Probab=95.50  E-value=0.095  Score=49.91  Aligned_cols=66  Identities=20%  Similarity=0.141  Sum_probs=44.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..++|+|+| .|.||..++..|..-|+       ++..+|....  ..+ ..   .+.      .+....++.+.+++||
T Consensus       198 ~gktVGIVG-~G~IG~~vA~~L~afG~-------~V~~~d~~~~--~~~-~~---~~~------g~~~~~~l~ell~~sD  257 (386)
T PLN03139        198 EGKTVGTVG-AGRIGRLLLQRLKPFNC-------NLLYHDRLKM--DPE-LE---KET------GAKFEEDLDAMLPKCD  257 (386)
T ss_pred             CCCEEEEEe-ecHHHHHHHHHHHHCCC-------EEEEECCCCc--chh-hH---hhc------CceecCCHHHHHhhCC
Confidence            357999999 89999999999986543       6888887531  111 00   010      1112236888899999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +|+++.
T Consensus       258 vV~l~l  263 (386)
T PLN03139        258 VVVINT  263 (386)
T ss_pred             EEEEeC
Confidence            999974

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.49  E-value=0.26  Score=39.80  Aligned_cols=32  Identities=31%  Similarity=0.594  Sum_probs=28.0

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      ||+|+| +|.+|+.++..|+..|+ +     ++.++|.+
T Consensus         1 ~VliiG-~GglGs~ia~~L~~~Gv-~-----~i~ivD~d   32 (143)
T cd01483           1 RVLLVG-LGGLGSEIALNLARSGV-G-----KITLIDFD   32 (143)
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCC-C-----EEEEEcCC
Confidence            689999 79999999999999886 3     79999865

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=95.47  E-value=0.05  Score=48.88  Aligned_cols=67  Identities=24%  Similarity=0.342  Sum_probs=42.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEE-EEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVIL-HMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l-~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ++||+|+|++|.+|..++..+....-      .++ .++|.+.  ++....    ..      ..+...+++.+.++++|
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~------~elvav~d~~~--~~~~~~----~~------~~i~~~~dl~~ll~~~D   62 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAED------LELVAAVDRPG--SPLVGQ----GA------LGVAITDDLEAVLADAD   62 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCC------CEEEEEEecCC--cccccc----CC------CCccccCCHHHhccCCC
Confidence            37999999669999999987765321      244 4577653  222211    11      12234457777788899


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +||.+.
T Consensus        63 vVid~t   68 (257)
T PRK00048         63 VLIDFT   68 (257)
T ss_pred             EEEECC
Confidence            998664

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.47  E-value=0.041  Score=46.51  Aligned_cols=66  Identities=20%  Similarity=0.113  Sum_probs=44.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..++|+|+| .|.||+.++..|..-|+       +|..+|......  .    ...+..      + ...++++.++.||
T Consensus        35 ~g~tvgIiG-~G~IG~~vA~~l~~fG~-------~V~~~d~~~~~~--~----~~~~~~------~-~~~~l~ell~~aD   93 (178)
T PF02826_consen   35 RGKTVGIIG-YGRIGRAVARRLKAFGM-------RVIGYDRSPKPE--E----GADEFG------V-EYVSLDELLAQAD   93 (178)
T ss_dssp             TTSEEEEES-TSHHHHHHHHHHHHTT--------EEEEEESSCHHH--H----HHHHTT------E-EESSHHHHHHH-S
T ss_pred             CCCEEEEEE-EcCCcCeEeeeeecCCc-------eeEEecccCChh--h----hccccc------c-eeeehhhhcchhh
Confidence            357999999 89999999999986554       899999864211  1    011111      1 1237888999999


Q ss_pred             EEEEeCC
Q 022227           84 IAVMVGG   90 (300)
Q Consensus        84 vVi~~ag   90 (300)
                      +|+++.-
T Consensus        94 iv~~~~p  100 (178)
T PF02826_consen   94 IVSLHLP  100 (178)
T ss_dssp             EEEE-SS
T ss_pred             hhhhhhc
Confidence            9999753

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR00936 ahcY adenosylhomocysteinase

Probab=95.46  E-value=0.12  Score=49.55  Aligned_cols=66  Identities=18%  Similarity=0.110  Sum_probs=44.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ...+|+|+| .|.+|..++..+...|.       +++.+|.++  .++....+   +..       .. .+..++++++|
T Consensus       194 ~Gk~VvViG-~G~IG~~vA~~ak~~Ga-------~ViV~d~dp--~r~~~A~~---~G~-------~v-~~leeal~~aD  252 (406)
T TIGR00936       194 AGKTVVVAG-YGWCGKGIAMRARGMGA-------RVIVTEVDP--IRALEAAM---DGF-------RV-MTMEEAAKIGD  252 (406)
T ss_pred             CcCEEEEEC-CCHHHHHHHHHHhhCcC-------EEEEEeCCh--hhHHHHHh---cCC-------Ee-CCHHHHHhcCC
Confidence            356999999 79999999998886654       688898864  22211111   111       11 13467889999


Q ss_pred             EEEEeCC
Q 022227           84 IAVMVGG   90 (300)
Q Consensus        84 vVi~~ag   90 (300)
                      +||.+.|
T Consensus       253 VVItaTG  259 (406)
T TIGR00936       253 IFITATG  259 (406)
T ss_pred             EEEECCC
Confidence            9988644

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.44  E-value=0.17  Score=44.11  Aligned_cols=35  Identities=29%  Similarity=0.524  Sum_probs=30.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      +..||+|+| +|.+|+.++..|+..|+ +     ++.|+|.+
T Consensus        27 ~~~~V~ViG-~GglGs~ia~~La~~Gv-g-----~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAG-AGGLGSNIAVALARSGV-G-----NLKLVDFD   61 (212)
T ss_pred             hCCCEEEEC-cCHHHHHHHHHHHHcCC-C-----eEEEEeCC
Confidence            356899999 79999999999998886 3     68999876

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.43  E-value=0.21  Score=43.96  Aligned_cols=78  Identities=22%  Similarity=0.293  Sum_probs=48.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc--hhh---hhhhhhhhhhhccCCcccEEEeCChhhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA--AEA---LNGVKMELVDAAFPLLKGVVATTDAVEA   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~--~~~---l~g~~~dl~~~~~~~~~~v~~~~~~~~a   78 (300)
                      +..||+|+| +|..|..++..|...|+-    ..++.++|++..  .++   +.....++.+.. .. ..  ...++.++
T Consensus        24 ~~~rvlvlG-AGgAg~aiA~~L~~~G~~----~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~-~~-~~--~~~~l~~~   94 (226)
T cd05311          24 EEVKIVING-AGAAGIAIARLLLAAGAK----PENIVVVDSKGVIYEGREDDLNPDKNEIAKET-NP-EK--TGGTLKEA   94 (226)
T ss_pred             cCCEEEEEC-chHHHHHHHHHHHHcCcC----cceEEEEeCCCccccccchhhhHHHHHHHHHh-cc-Cc--ccCCHHHH
Confidence            346999999 699999999999887652    115999998721  111   221222222211 00 11  11256688


Q ss_pred             cCCCcEEEEeCC
Q 022227           79 CTGVNIAVMVGG   90 (300)
Q Consensus        79 ~~~aDvVi~~ag   90 (300)
                      ++++|++|-+-+
T Consensus        95 l~~~dvlIgaT~  106 (226)
T cd05311          95 LKGADVFIGVSR  106 (226)
T ss_pred             HhcCCEEEeCCC
Confidence            999999988754

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK08818 prephenate dehydrogenase; Provisional

Probab=95.36  E-value=0.18  Score=47.69  Aligned_cols=56  Identities=14%  Similarity=0.164  Sum_probs=40.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .+||+|||.+|-+|.+++..|.+..  +    .+|+-+|...              ..         ..+..+.+++||+
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~--~----~~V~g~D~~d--------------~~---------~~~~~~~v~~aDl   54 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRM--Q----LEVIGHDPAD--------------PG---------SLDPATLLQRADV   54 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcC--C----CEEEEEcCCc--------------cc---------cCCHHHHhcCCCE
Confidence            4799999955999999999998641  2    2688888631              00         1245677899999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      ||++.
T Consensus        55 Vilav   59 (370)
T PRK08818         55 LIFSA   59 (370)
T ss_pred             EEEeC
Confidence            99984

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=95.31  E-value=0.12  Score=48.24  Aligned_cols=92  Identities=21%  Similarity=0.165  Sum_probs=62.5

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-CCcccEEEeCC-----
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTD-----   74 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-~~~~~v~~~~~-----   74 (300)
                      |+....-++|.||+||.|..+...++....+.   ...+.+-.++  +++|+.....+..... .+...+.+..|     
T Consensus         1 M~~~~yDvVIyGASGfTG~yivee~v~~~~~~---~~slavAGRn--~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~   75 (423)
T KOG2733|consen    1 MAAIRYDVVIYGASGFTGKYIVEEAVSSQVFE---GLSLAVAGRN--EKKLQEVLEKVGEKTGTDLSSSVILIADSANEA   75 (423)
T ss_pred             CCCceeeEEEEccccccceeeHHHHhhhhccc---CceEEEecCC--HHHHHHHHHHHhhccCCCcccceEEEecCCCHH
Confidence            54556679999999999999999998754432   1267788775  4777755444444332 12223333223     


Q ss_pred             -hhhhcCCCcEEEEeCCCCCCCCC
Q 022227           75 -AVEACTGVNIAVMVGGFPRKEGM   97 (300)
Q Consensus        75 -~~~a~~~aDvVi~~ag~~~~~g~   97 (300)
                       +.+-++.|-+|+.|+|+-|..|+
T Consensus        76 Sl~emak~~~vivN~vGPyR~hGE   99 (423)
T KOG2733|consen   76 SLDEMAKQARVIVNCVGPYRFHGE   99 (423)
T ss_pred             HHHHHHhhhEEEEeccccceecCc
Confidence             66778899999999999887665

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=95.30  E-value=0.19  Score=45.26  Aligned_cols=84  Identities=14%  Similarity=0.116  Sum_probs=53.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEE-EEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhh-cCCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA-CTGV   82 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~-L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a-~~~a   82 (300)
                      .+||+|+| .|.+|..++..|..+..    .+.++. ++|...  ++.+.    +.+.       ....+++.+. ....
T Consensus         2 ~~rvgiIG-~GaIG~~va~~l~~~~~----~~~~l~~V~~~~~--~~~~~----~~~~-------~~~~~~l~~ll~~~~   63 (267)
T PRK13301          2 THRIAFIG-LGAIASDVAAGLLADAA----QPCQLAALTRNAA--DLPPA----LAGR-------VALLDGLPGLLAWRP   63 (267)
T ss_pred             ceEEEEEC-ccHHHHHHHHHHhcCCC----CceEEEEEecCCH--HHHHH----hhcc-------CcccCCHHHHhhcCC
Confidence            46999999 79999999998876432    123443 455532  22222    2211       1133456553 4789


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcC
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA  122 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~  122 (300)
                      |+||-+|+.                ..++++++.+-+.+.
T Consensus        64 DlVVE~A~~----------------~av~e~~~~iL~~g~   87 (267)
T PRK13301         64 DLVVEAAGQ----------------QAIAEHAEGCLTAGL   87 (267)
T ss_pred             CEEEECCCH----------------HHHHHHHHHHHhcCC
Confidence            999999863                566788888877654

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.29  E-value=0.097  Score=45.19  Aligned_cols=35  Identities=31%  Similarity=0.413  Sum_probs=29.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      +.++|+|+| .|.+|++++..|...|.       +|+.+|.++
T Consensus        27 ~gk~v~I~G-~G~vG~~~A~~L~~~G~-------~Vvv~D~~~   61 (200)
T cd01075          27 EGKTVAVQG-LGKVGYKLAEHLLEEGA-------KLIVADINE   61 (200)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEcCCH
Confidence            457999999 79999999999998774       788999863

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK06199 ornithine cyclodeaminase; Validated

Probab=95.28  E-value=0.11  Score=49.50  Aligned_cols=76  Identities=13%  Similarity=0.205  Sum_probs=53.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~-~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      ...+++|+| +|..+...+..++.- .-+.     +|.++|+++  ++++..+.++.+.. +...++....+.++++++|
T Consensus       154 da~~l~iiG-~G~QA~~~l~a~~~v~~~i~-----~V~v~~r~~--~~a~~f~~~~~~~~-~~~~~v~~~~s~~eav~~A  224 (379)
T PRK06199        154 DSKVVGLLG-PGVMGKTILAAFMAVCPGID-----TIKIKGRGQ--KSLDSFATWVAETY-PQITNVEVVDSIEEVVRGS  224 (379)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHhcCCcc-----EEEEECCCH--HHHHHHHHHHHHhc-CCCceEEEeCCHHHHHcCC
Confidence            457899999 799999888777652 1122     799999964  56666655554321 1112466677899999999


Q ss_pred             cEEEEe
Q 022227           83 NIAVMV   88 (300)
Q Consensus        83 DvVi~~   88 (300)
                      |+|+.+
T Consensus       225 DIVvta  230 (379)
T PRK06199        225 DIVTYC  230 (379)
T ss_pred             CEEEEc
Confidence            998864

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=95.20  E-value=0.055  Score=50.10  Aligned_cols=65  Identities=12%  Similarity=0.041  Sum_probs=42.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .+||+||| .|.+|.+++..|...|+       +++..+... .+.++.    +...      .+... +..+++++||+
T Consensus         3 ~kkIgiIG-~G~mG~AiA~~L~~sG~-------~Viv~~~~~-~~~~~~----a~~~------Gv~~~-s~~ea~~~ADi   62 (314)
T TIGR00465         3 GKTVAIIG-YGSQGHAQALNLRDSGL-------NVIVGLRKG-GASWKK----ATED------GFKVG-TVEEAIPQADL   62 (314)
T ss_pred             cCEEEEEe-EcHHHHHHHHHHHHCCC-------eEEEEECcC-hhhHHH----HHHC------CCEEC-CHHHHHhcCCE
Confidence            46899999 79999999999998764       455544432 122211    1111      11222 46778899999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      |+++.
T Consensus        63 VvLaV   67 (314)
T TIGR00465        63 IMNLL   67 (314)
T ss_pred             EEEeC
Confidence            99985

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=95.19  E-value=0.1  Score=43.53  Aligned_cols=57  Identities=19%  Similarity=0.256  Sum_probs=40.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +.++|+|+|.+..+|..++..|..++.       .+.+.+...                          .++.+.++.||
T Consensus        35 ~Gk~v~VvGrs~~VG~Pla~lL~~~~a-------tVt~~h~~T--------------------------~~l~~~~~~AD   81 (160)
T PF02882_consen   35 EGKKVVVVGRSNIVGKPLAMLLLNKGA-------TVTICHSKT--------------------------KNLQEITRRAD   81 (160)
T ss_dssp             TT-EEEEE-TTTTTHHHHHHHHHHTT--------EEEEE-TTS--------------------------SSHHHHHTTSS
T ss_pred             CCCEEEEECCcCCCChHHHHHHHhCCC-------eEEeccCCC--------------------------Ccccceeeecc
Confidence            457999999888899999999988763       577765431                          15567789999


Q ss_pred             EEEEeCCCCC
Q 022227           84 IAVMVGGFPR   93 (300)
Q Consensus        84 vVi~~ag~~~   93 (300)
                      +||.++|.|.
T Consensus        82 IVVsa~G~~~   91 (160)
T PF02882_consen   82 IVVSAVGKPN   91 (160)
T ss_dssp             EEEE-SSSTT
T ss_pred             EEeeeecccc
Confidence            9999988763

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=95.09  E-value=0.066  Score=50.18  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=20.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARG   28 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~   28 (300)
                      +||+|+||+|.+|..++..|...
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~   25 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNH   25 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcC
Confidence            79999999999999999888754

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=95.08  E-value=0.23  Score=46.50  Aligned_cols=57  Identities=18%  Similarity=0.141  Sum_probs=35.5

Q ss_pred             HHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEEEEe
Q 022227           18 GYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMV   88 (300)
Q Consensus        18 G~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvVi~~   88 (300)
                      |..++..|+..|.       +|+++|.++  +.++....+...     ...+...++..+++++||+||++
T Consensus        32 G~~MA~~La~aG~-------~V~v~Dr~~--~~l~~~~~~~l~-----~~Gi~~asd~~eaa~~ADvVIla   88 (342)
T PRK12557         32 GSRMAIEFAEAGH-------DVVLAEPNR--SILSEELWKKVE-----DAGVKVVSDDAEAAKHGEIHILF   88 (342)
T ss_pred             HHHHHHHHHhCCC-------eEEEEECCH--HHhhHHHHHHHH-----HCCCEEeCCHHHHHhCCCEEEEE
Confidence            6778888877664       799999864  222111111111     11234556777889999999998

>PLN00015 protochlorophyllide reductase

Probab=95.06  E-value=0.49  Score=43.31  Aligned_cols=116  Identities=10%  Similarity=0.031  Sum_probs=61.4

Q ss_pred             EEEcCCChHHHHHHHHHHhcc-cCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh-------h
Q 022227            9 LVTGAAGQIGYALVPMIARGV-MLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV-------E   77 (300)
Q Consensus         9 ~IiGAaG~vG~~la~~L~~~~-~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~-------~   77 (300)
                      +||||++.+|..++..|+..| .       .+++.+.++  ++++....++......   ...++.-..+..       +
T Consensus         1 lITGas~GIG~aia~~l~~~G~~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~   71 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKW-------HVVMACRDF--LKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRR   71 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCC-------EEEEEeCCH--HHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHh
Confidence            489999999999999999877 4       688887653  3333222222110000   000000000111       1


Q ss_pred             hcCCCcEEEEeCCCCCC----CCCcHH---HHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCc
Q 022227           78 ACTGVNIAVMVGGFPRK----EGMERK---DVMSKNVSI----YKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~----~g~~r~---dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                      .....|++|+.||....    ...+..   ..+..|+..    ++.+.+.+.+......+||++|+-
T Consensus        72 ~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~  138 (308)
T PLN00015         72 SGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSI  138 (308)
T ss_pred             cCCCCCEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEecc
Confidence            12457999999987421    122332   345566544    555566665542102467777653

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=95.02  E-value=0.1  Score=43.46  Aligned_cols=66  Identities=26%  Similarity=0.316  Sum_probs=41.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .++++|+| -|.+|+.+|..|...|.       .+...|+++ ...+++. +   |.       +.+. ..+++++.+|+
T Consensus        23 Gk~vvV~G-YG~vG~g~A~~lr~~Ga-------~V~V~e~DP-i~alqA~-~---dG-------f~v~-~~~~a~~~adi   81 (162)
T PF00670_consen   23 GKRVVVIG-YGKVGKGIARALRGLGA-------RVTVTEIDP-IRALQAA-M---DG-------FEVM-TLEEALRDADI   81 (162)
T ss_dssp             TSEEEEE---SHHHHHHHHHHHHTT--------EEEEE-SSH-HHHHHHH-H---TT--------EEE--HHHHTTT-SE
T ss_pred             CCEEEEeC-CCcccHHHHHHHhhCCC-------EEEEEECCh-HHHHHhh-h---cC-------cEec-CHHHHHhhCCE
Confidence            46899999 79999999999988774       789999975 2222221 1   11       1222 57889999999


Q ss_pred             EEEeCCC
Q 022227           85 AVMVGGF   91 (300)
Q Consensus        85 Vi~~ag~   91 (300)
                      +|.+-|.
T Consensus        82 ~vtaTG~   88 (162)
T PF00670_consen   82 FVTATGN   88 (162)
T ss_dssp             EEE-SSS
T ss_pred             EEECCCC
Confidence            8876543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=94.99  E-value=0.18  Score=45.73  Aligned_cols=74  Identities=11%  Similarity=0.089  Sum_probs=48.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +..+++|+| +|.+|..++..|...|..      +|.+++++.  ++++..+.++....     .+....+..+.+.++|
T Consensus       122 ~~k~vlVlG-aGg~a~ai~~aL~~~g~~------~V~v~~R~~--~~a~~l~~~~~~~~-----~~~~~~~~~~~~~~~D  187 (278)
T PRK00258        122 KGKRILILG-AGGAARAVILPLLDLGVA------EITIVNRTV--ERAEELAKLFGALG-----KAELDLELQEELADFD  187 (278)
T ss_pred             CCCEEEEEc-CcHHHHHHHHHHHHcCCC------EEEEEeCCH--HHHHHHHHHhhhcc-----ceeecccchhccccCC
Confidence            346899999 699999999999987642      799998863  55544433332111     1112113446778999


Q ss_pred             EEEEeCCC
Q 022227           84 IAVMVGGF   91 (300)
Q Consensus        84 vVi~~ag~   91 (300)
                      +||.+-..
T Consensus       188 ivInaTp~  195 (278)
T PRK00258        188 LIINATSA  195 (278)
T ss_pred             EEEECCcC
Confidence            99997533

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=94.98  E-value=0.064  Score=50.22  Aligned_cols=71  Identities=21%  Similarity=0.363  Sum_probs=42.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEEE
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAV   86 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvVi   86 (300)
                      ||+|+||+|.+|..++..|...+.    ...+++++....+    .+....+..      ..+.+..-..++++++|+||
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~h----p~~~l~~~as~~~----~g~~~~~~~------~~~~~~~~~~~~~~~~D~v~   66 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNF----PIDKLVLLASDRS----AGRKVTFKG------KELEVNEAKIESFEGIDIAL   66 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCC----ChhhEEEEecccc----CCCeeeeCC------eeEEEEeCChHHhcCCCEEE
Confidence            689999999999999998877542    1125666644321    112111111      12222222245679999999


Q ss_pred             EeCCC
Q 022227           87 MVGGF   91 (300)
Q Consensus        87 ~~ag~   91 (300)
                      ++.|.
T Consensus        67 ~a~g~   71 (339)
T TIGR01296        67 FSAGG   71 (339)
T ss_pred             ECCCH
Confidence            98753

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=94.92  E-value=1.8  Score=39.87  Aligned_cols=33  Identities=15%  Similarity=0.263  Sum_probs=27.0

Q ss_pred             CCCCcEEEEEcC--CChHHHHHHHHHHhcccCCCCCCeEEEE
Q 022227            2 AKEPVRVLVTGA--AGQIGYALVPMIARGVMLGTDQPVILHM   41 (300)
Q Consensus         2 ~~~~~kV~IiGA--aG~vG~~la~~L~~~~~~~~~~~~~l~L   41 (300)
                      +.+.+.+.||||  +.-||..++..|+..|.       +|++
T Consensus         6 ~l~gk~alITGa~~s~GIG~a~A~~la~~Ga-------~Vv~   40 (303)
T PLN02730          6 DLRGKRAFIAGVADDNGYGWAIAKALAAAGA-------EILV   40 (303)
T ss_pred             CCCCCEEEEeCCCCCCcHHHHHHHHHHHCCC-------EEEE
Confidence            445678999998  58899999999998874       6777

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=94.90  E-value=0.38  Score=42.15  Aligned_cols=30  Identities=37%  Similarity=0.378  Sum_probs=25.6

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhccc
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVM   30 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~   30 (300)
                      |.++.++|.||||++-+|..++..|+..|.
T Consensus         1 ~~~~~~~ilITGas~GiG~aia~~l~~~G~   30 (251)
T COG1028           1 MDLSGKVALVTGASSGIGRAIARALAREGA   30 (251)
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC
Confidence            455678999999999999999999997764

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.89  E-value=0.27  Score=44.85  Aligned_cols=117  Identities=17%  Similarity=0.168  Sum_probs=69.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh--ccCCcccEEE-------eCCh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA--AFPLLKGVVA-------TTDA   75 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~--~~~~~~~v~~-------~~~~   75 (300)
                      ...|.||||.+-+|..++.++++++-       .++|.|++++  -.+..+..+.+.  ...+..+++-       -...
T Consensus        38 g~~vLITGgg~GlGr~ialefa~rg~-------~~vl~Din~~--~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~V  108 (300)
T KOG1201|consen   38 GEIVLITGGGSGLGRLIALEFAKRGA-------KLVLWDINKQ--GNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKV  108 (300)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHhCC-------eEEEEecccc--chHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHH
Confidence            45799999888899999999998874       6999999752  111122222211  0000001100       0124


Q ss_pred             hhhcCCCcEEEEeCCCCC-CC--CCcHHH---HHHhh----HHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           76 VEACTGVNIAVMVGGFPR-KE--GMERKD---VMSKN----VSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~-~~--g~~r~d---l~~~N----~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      ++...+.|++|.-||+-. ++  ..++++   .++.|    .-.++...+.+.+...  .-+|.+++
T Consensus       109 k~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~--GHIV~IaS  173 (300)
T KOG1201|consen  109 KKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNN--GHIVTIAS  173 (300)
T ss_pred             HHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCC--ceEEEehh
Confidence            556778999999999743 22  223332   23344    4567888899988753  44666554

>PLN02494 adenosylhomocysteinase

Probab=94.85  E-value=0.2  Score=48.82  Aligned_cols=90  Identities=14%  Similarity=0.189  Sum_probs=55.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      ..+|+|+| .|.+|..++..+...|.       .|+.+|+++. ..+++.    .+.. .      . .+..++++.+|+
T Consensus       254 GKtVvViG-yG~IGr~vA~~aka~Ga-------~VIV~e~dp~-r~~eA~----~~G~-~------v-v~leEal~~ADV  312 (477)
T PLN02494        254 GKVAVICG-YGDVGKGCAAAMKAAGA-------RVIVTEIDPI-CALQAL----MEGY-Q------V-LTLEDVVSEADI  312 (477)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEeCCch-hhHHHH----hcCC-e------e-ccHHHHHhhCCE
Confidence            47899999 79999999999876654       6888888641 111211    1111 0      1 135678899999


Q ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCc
Q 022227           85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                      ||.+.|...   .           +..+   .+... ++++++++++.+
T Consensus       313 VI~tTGt~~---v-----------I~~e---~L~~M-K~GAiLiNvGr~  343 (477)
T PLN02494        313 FVTTTGNKD---I-----------IMVD---HMRKM-KNNAIVCNIGHF  343 (477)
T ss_pred             EEECCCCcc---c-----------hHHH---HHhcC-CCCCEEEEcCCC
Confidence            998654321   0           0122   23333 346789999875

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.83  E-value=0.1  Score=47.82  Aligned_cols=56  Identities=20%  Similarity=0.342  Sum_probs=44.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..++|+|+|.+|.||..++..|+..|.       ++.+++...                          .++.+.++.||
T Consensus       158 ~Gk~V~vIG~s~ivG~PmA~~L~~~ga-------tVtv~~~~t--------------------------~~l~e~~~~AD  204 (301)
T PRK14194        158 TGKHAVVIGRSNIVGKPMAALLLQAHC-------SVTVVHSRS--------------------------TDAKALCRQAD  204 (301)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC-------EEEEECCCC--------------------------CCHHHHHhcCC
Confidence            457999999656999999999998775       788886531                          14567789999


Q ss_pred             EEEEeCCCC
Q 022227           84 IAVMVGGFP   92 (300)
Q Consensus        84 vVi~~ag~~   92 (300)
                      +||.+.|.+
T Consensus       205 IVIsavg~~  213 (301)
T PRK14194        205 IVVAAVGRP  213 (301)
T ss_pred             EEEEecCCh
Confidence            999998765

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=94.82  E-value=0.099  Score=44.19  Aligned_cols=102  Identities=13%  Similarity=0.146  Sum_probs=60.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchh-----hhhhhhhhhhhhccCCcccEEEeCChhh
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE-----ALNGVKMELVDAAFPLLKGVVATTDAVE   77 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~-----~l~g~~~dl~~~~~~~~~~v~~~~~~~~   77 (300)
                      |.++...|.||+|-.|.-+...+++.+.|+     .++++-+.+-.+     .+.-...|++..           +++.+
T Consensus        16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FS-----KV~~i~RR~~~d~at~k~v~q~~vDf~Kl-----------~~~a~   79 (238)
T KOG4039|consen   16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFS-----KVYAILRRELPDPATDKVVAQVEVDFSKL-----------SQLAT   79 (238)
T ss_pred             hhccceEEEeccccccHHHHHHHHhcccce-----eEEEEEeccCCCccccceeeeEEechHHH-----------HHHHh
Confidence            344678899999999999999999999887     566665432101     111112233222           25667


Q ss_pred             hcCCCcEEEEeCCCCCC-CCCcHHHHHHhhHHHHHHHHHHHhhhcC
Q 022227           78 ACTGVNIAVMVGGFPRK-EGMERKDVMSKNVSIYKAQASALEQHAA  122 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~-~g~~r~dl~~~N~~i~~~i~~~i~~~~~  122 (300)
                      ++.+-|+.|++-|..|. .|-+.  ..+..-..+...++..++.+-
T Consensus        80 ~~qg~dV~FcaLgTTRgkaGadg--fykvDhDyvl~~A~~AKe~Gc  123 (238)
T KOG4039|consen   80 NEQGPDVLFCALGTTRGKAGADG--FYKVDHDYVLQLAQAAKEKGC  123 (238)
T ss_pred             hhcCCceEEEeecccccccccCc--eEeechHHHHHHHHHHHhCCC
Confidence            88999999998777663 33221  111122333455666665543

>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=94.80  E-value=0.046  Score=48.59  Aligned_cols=79  Identities=11%  Similarity=0.165  Sum_probs=44.6

Q ss_pred             cEEE-EEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC-chhhhhhhhhhhhhhc-cC-CcccEEEeCChhhhcCC
Q 022227            6 VRVL-VTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-AAEALNGVKMELVDAA-FP-LLKGVVATTDAVEACTG   81 (300)
Q Consensus         6 ~kV~-IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~-~~~~l~g~~~dl~~~~-~~-~~~~v~~~~~~~~a~~~   81 (300)
                      +|++ |.||+|.||+.....|....+|      ++.++.-.. +..+--+.+....+.. .| ..+.+++..-..+.|++
T Consensus         4 kk~a~vlGaTGaVGQrFi~lLsdhP~f------~ikvLgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~~F~e   77 (361)
T KOG4777|consen    4 KKSAPVLGATGAVGQRFISLLSDHPYF------SIKVLGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTADSFNE   77 (361)
T ss_pred             ccccceeeccchhHHHHHHHhccCCcc------eeeeecccccccCCceEecccchhcccccchhhhhhHhhcChhhccc
Confidence            4677 9999999999999888877665      466664321 1111111111111111 11 12344444344566999


Q ss_pred             CcEEEEeCC
Q 022227           82 VNIAVMVGG   90 (300)
Q Consensus        82 aDvVi~~ag   90 (300)
                      ||+|+..++
T Consensus        78 cDIvfsgld   86 (361)
T KOG4777|consen   78 CDIVFSGLD   86 (361)
T ss_pred             ccEEEecCC
Confidence            999998653

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=94.78  E-value=0.27  Score=43.79  Aligned_cols=35  Identities=34%  Similarity=0.567  Sum_probs=29.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      +..||+|+| +|.+|+.++..|+..|+ +     ++.++|.+
T Consensus        31 ~~~~VliiG-~GglGs~va~~La~~Gv-g-----~i~lvD~D   65 (245)
T PRK05690         31 KAARVLVVG-LGGLGCAASQYLAAAGV-G-----TLTLVDFD   65 (245)
T ss_pred             cCCeEEEEC-CCHHHHHHHHHHHHcCC-C-----EEEEEcCC
Confidence            346999999 69999999999999885 4     78999864

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.77  E-value=0.16  Score=41.41  Aligned_cols=56  Identities=20%  Similarity=0.264  Sum_probs=43.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +.++|+|+|.+..+|..++..|.+++.       ++.+.+.+.                          .+..+++++||
T Consensus        27 ~gk~v~VvGrs~~vG~pla~lL~~~ga-------tV~~~~~~t--------------------------~~l~~~v~~AD   73 (140)
T cd05212          27 DGKKVLVVGRSGIVGAPLQCLLQRDGA-------TVYSCDWKT--------------------------IQLQSKVHDAD   73 (140)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEeCCCC--------------------------cCHHHHHhhCC
Confidence            567999999888999999998887654       677776431                          14567889999


Q ss_pred             EEEEeCCCC
Q 022227           84 IAVMVGGFP   92 (300)
Q Consensus        84 vVi~~ag~~   92 (300)
                      +||.+.|.+
T Consensus        74 IVvsAtg~~   82 (140)
T cd05212          74 VVVVGSPKP   82 (140)
T ss_pred             EEEEecCCC
Confidence            999988765

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]

Probab=94.73  E-value=0.13  Score=49.85  Aligned_cols=123  Identities=23%  Similarity=0.232  Sum_probs=67.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch----hhhhhhhh-hhhhhc---cC-CcccEE-----
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA----EALNGVKM-ELVDAA---FP-LLKGVV-----   70 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~----~~l~g~~~-dl~~~~---~~-~~~~v~-----   70 (300)
                      .+.|.||||+||+|.-+...|+..-   ++-. .|.|+=+.+..    +++++... ++.+..   .+ ...++.     
T Consensus        12 ~k~i~vTG~tGFlgKVliEklLr~~---p~v~-~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GD   87 (467)
T KOG1221|consen   12 NKTIFVTGATGFLGKVLIEKLLRTT---PDVK-RIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGD   87 (467)
T ss_pred             CCeEEEEcccchhHHHHHHHHHhcC---cCcc-eEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccc
Confidence            4689999999999999998887542   0111 56665443221    22222111 111100   00 001111     


Q ss_pred             -------Ee-CChhhhcCCCcEEEEeCCCCCCCCCcHHH-HHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           71 -------AT-TDAVEACTGVNIAVMVGGFPRKEGMERKD-VMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        71 -------~~-~~~~~a~~~aDvVi~~ag~~~~~g~~r~d-l~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                             +. +|...-++..|+|||+|+..+..+  +.+ -+..|....+++.+.+++.-  .....+..+++.
T Consensus        88 i~~~~LGis~~D~~~l~~eV~ivih~AAtvrFde--~l~~al~iNt~Gt~~~l~lak~~~--~l~~~vhVSTAy  157 (467)
T KOG1221|consen   88 ISEPDLGISESDLRTLADEVNIVIHSAATVRFDE--PLDVALGINTRGTRNVLQLAKEMV--KLKALVHVSTAY  157 (467)
T ss_pred             ccCcccCCChHHHHHHHhcCCEEEEeeeeeccch--hhhhhhhhhhHhHHHHHHHHHHhh--hhheEEEeehhh
Confidence                   11 234445678899999987665322  222 24568888888888777663  345555555543

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=94.72  E-value=0.16  Score=48.29  Aligned_cols=61  Identities=20%  Similarity=0.220  Sum_probs=43.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..++|+|+| .|.||+.++..|..-|+       ++..+|.... +  .+      +..        ...++++.++.||
T Consensus       115 ~gktvGIIG-~G~IG~~vA~~l~a~G~-------~V~~~dp~~~-~--~~------~~~--------~~~~L~ell~~sD  169 (378)
T PRK15438        115 HDRTVGIVG-VGNVGRRLQARLEALGI-------KTLLCDPPRA-D--RG------DEG--------DFRSLDELVQEAD  169 (378)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCC-------EEEEECCccc-c--cc------ccc--------ccCCHHHHHhhCC
Confidence            457999999 89999999999886664       7899986321 0  00      000        0126788889999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +|++..
T Consensus       170 iI~lh~  175 (378)
T PRK15438        170 ILTFHT  175 (378)
T ss_pred             EEEEeC
Confidence            998764

>PLN02928 oxidoreductase family protein

Probab=94.72  E-value=0.12  Score=48.46  Aligned_cols=75  Identities=17%  Similarity=0.121  Sum_probs=45.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-CCcccEEEeCChhhhcCCCc
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-~~~~~v~~~~~~~~a~~~aD   83 (300)
                      .++|+|+| .|.||+.++..|..-|+       +|..+|.....+..  ....+..... ..........++++.++.||
T Consensus       159 gktvGIiG-~G~IG~~vA~~l~afG~-------~V~~~dr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~ell~~aD  228 (347)
T PLN02928        159 GKTVFILG-YGAIGIELAKRLRPFGV-------KLLATRRSWTSEPE--DGLLIPNGDVDDLVDEKGGHEDIYEFAGEAD  228 (347)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHhhCCC-------EEEEECCCCChhhh--hhhccccccccccccccCcccCHHHHHhhCC
Confidence            47999999 89999999999886554       78889875211100  0000000000 00000001236889999999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +|+++.
T Consensus       229 iVvl~l  234 (347)
T PLN02928        229 IVVLCC  234 (347)
T ss_pred             EEEECC
Confidence            999975

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=94.70  E-value=0.089  Score=48.89  Aligned_cols=35  Identities=26%  Similarity=0.386  Sum_probs=28.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      ++||+|+||+|+.|.-+...|....      .+|+.++...
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp------~ve~~~~ss~   36 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHP------DVELILISSR   36 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC------CeEEEEeech
Confidence            5799999999999999998888653      2477777653

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=94.66  E-value=0.22  Score=49.52  Aligned_cols=64  Identities=17%  Similarity=0.094  Sum_probs=44.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..++|+|+| .|.||+.++..|..-|+       +++.+|.....+.    ..++         .+... ++.+.++.||
T Consensus       139 ~gktvgIiG-~G~IG~~vA~~l~~fG~-------~V~~~d~~~~~~~----~~~~---------g~~~~-~l~ell~~aD  196 (526)
T PRK13581        139 YGKTLGIIG-LGRIGSEVAKRAKAFGM-------KVIAYDPYISPER----AAQL---------GVELV-SLDELLARAD  196 (526)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEECCCCChhH----HHhc---------CCEEE-cHHHHHhhCC
Confidence            357999999 89999999999886554       7899997432111    1111         11122 6788899999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +|+++.
T Consensus       197 iV~l~l  202 (526)
T PRK13581        197 FITLHT  202 (526)
T ss_pred             EEEEcc
Confidence            999975

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=94.65  E-value=0.07  Score=51.06  Aligned_cols=76  Identities=22%  Similarity=0.330  Sum_probs=46.6

Q ss_pred             CCcEEEEEcC----------------CChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh-hhhhhhhhccCCc
Q 022227            4 EPVRVLVTGA----------------AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG-VKMELVDAAFPLL   66 (300)
Q Consensus         4 ~~~kV~IiGA----------------aG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g-~~~dl~~~~~~~~   66 (300)
                      +.++|.||||                +|.+|..++..|..+|.       +|++++.+.+.+...+ ...|+.+... . 
T Consensus       187 ~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga-------~V~~v~~~~~~~~~~~~~~~dv~~~~~-~-  257 (399)
T PRK05579        187 AGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGA-------DVTLVSGPVNLPTPAGVKRIDVESAQE-M-  257 (399)
T ss_pred             CCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCC-------EEEEeCCCccccCCCCcEEEccCCHHH-H-
Confidence            4579999998                89999999999999875       7888887531110000 0111111110 0 


Q ss_pred             ccEEEeCChhhhcCCCcEEEEeCCCCC
Q 022227           67 KGVVATTDAVEACTGVNIAVMVGGFPR   93 (300)
Q Consensus        67 ~~v~~~~~~~~a~~~aDvVi~~ag~~~   93 (300)
                           .....+.+...|++|++||+..
T Consensus       258 -----~~~v~~~~~~~DilI~~Aav~d  279 (399)
T PRK05579        258 -----LDAVLAALPQADIFIMAAAVAD  279 (399)
T ss_pred             -----HHHHHHhcCCCCEEEEcccccc
Confidence                 0011233567999999999753

>PLN02858 fructose-bisphosphate aldolase

Probab=94.58  E-value=0.25  Score=54.52  Aligned_cols=97  Identities=13%  Similarity=0.232  Sum_probs=0.0

Q ss_pred             CCCCC-cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc
Q 022227            1 MAKEP-VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC   79 (300)
Q Consensus         1 m~~~~-~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~   79 (300)
                      |+.++ ++|++|| .|.+|..++..|+..|+       ++..+|+.      ......+.+..      .....+..+++
T Consensus       319 ~~~~~~~~IGfIG-lG~MG~~mA~~L~~~G~-------~V~v~dr~------~~~~~~l~~~G------a~~~~s~~e~~  378 (1378)
T PLN02858        319 MQAKPVKRIGFIG-LGAMGFGMASHLLKSNF-------SVCGYDVY------KPTLVRFENAG------GLAGNSPAEVA  378 (1378)
T ss_pred             ccccCCCeEEEEC-chHHHHHHHHHHHHCCC-------EEEEEeCC------HHHHHHHHHcC------CeecCCHHHHH


Q ss_pred             CCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHH---HHHhhhcCCCeEEEEecC
Q 022227           80 TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQA---SALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~---~~i~~~~~~~~~viv~sN  132 (300)
                      ++||+||++               -.+-..++++.   ..+.....++..+|..|+
T Consensus       379 ~~aDvVi~~---------------V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~ST  419 (1378)
T PLN02858        379 KDVDVLVIM---------------VANEVQAENVLFGDLGAVSALPAGASIVLSST  419 (1378)
T ss_pred             hcCCEEEEe---------------cCChHHHHHHHhchhhHHhcCCCCCEEEECCC

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=94.58  E-value=0.13  Score=44.24  Aligned_cols=78  Identities=9%  Similarity=0.091  Sum_probs=48.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +.++|+|+|.+.-||..++..|++++.       .+.++|++....+..+.  .+.|...+. .  ..+.++.+.++.||
T Consensus        61 ~GK~vvVIGrS~iVGkPla~lL~~~~A-------tVti~~~~~~~~~~~~~--~~~hs~t~~-~--~~~~~l~~~~~~AD  128 (197)
T cd01079          61 YGKTITIINRSEVVGRPLAALLANDGA-------RVYSVDINGIQVFTRGE--SIRHEKHHV-T--DEEAMTLDCLSQSD  128 (197)
T ss_pred             CCCEEEEECCCccchHHHHHHHHHCCC-------EEEEEecCccccccccc--ccccccccc-c--chhhHHHHHhhhCC
Confidence            457999999888999999999988763       78899875311100100  011111000 0  00112567789999


Q ss_pred             EEEEeCCCCC
Q 022227           84 IAVMVGGFPR   93 (300)
Q Consensus        84 vVi~~ag~~~   93 (300)
                      +||.+.|.+.
T Consensus       129 IVIsAvG~~~  138 (197)
T cd01079         129 VVITGVPSPN  138 (197)
T ss_pred             EEEEccCCCC
Confidence            9999988764

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=94.58  E-value=0.18  Score=48.00  Aligned_cols=61  Identities=15%  Similarity=0.109  Sum_probs=43.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..++|+|+| .|.||+.++..|..-|+       ++..+|....  ...       ...        ...++.+.++.||
T Consensus       115 ~gktvGIIG-~G~IG~~va~~l~a~G~-------~V~~~Dp~~~--~~~-------~~~--------~~~~l~ell~~aD  169 (381)
T PRK00257        115 AERTYGVVG-AGHVGGRLVRVLRGLGW-------KVLVCDPPRQ--EAE-------GDG--------DFVSLERILEECD  169 (381)
T ss_pred             CcCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEECCccc--ccc-------cCc--------cccCHHHHHhhCC
Confidence            357999999 89999999999887664       7999987421  111       000        0125778889999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +|++..
T Consensus       170 iV~lh~  175 (381)
T PRK00257        170 VISLHT  175 (381)
T ss_pred             EEEEeC
Confidence            998864

>KOG2774 consensus NAD dependent epimerase [General function prediction only]

Probab=94.58  E-value=0.16  Score=44.85  Aligned_cols=161  Identities=17%  Similarity=0.253  Sum_probs=90.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhh-hh-h--hhhhhhhhccCCcccEEEeCChhhhc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA-LN-G--VKMELVDAAFPLLKGVVATTDAVEAC   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~-l~-g--~~~dl~~~~~~~~~~v~~~~~~~~a~   79 (300)
                      ++.||.|+|+.|+.|..+|..|..+  +|.+   .+.|-|+.+-.+. ++ |  ...|+.|..           ++.+-.
T Consensus        43 ~~PrvLITG~LGQLG~~~A~LLR~~--yGs~---~VILSDI~KPp~~V~~~GPyIy~DILD~K-----------~L~eIV  106 (366)
T KOG2774|consen   43 KAPRVLITGSLGQLGRGLASLLRYM--YGSE---CVILSDIVKPPANVTDVGPYIYLDILDQK-----------SLEEIV  106 (366)
T ss_pred             CCCeEEEecchHHHhHHHHHHHHHH--hCCc---cEehhhccCCchhhcccCCchhhhhhccc-----------cHHHhh
Confidence            4679999999999999999887643  3422   5888888531111 11 1  223333322           222222


Q ss_pred             --CCCcEEEEeCCCCCCCCCcHHHH-HHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH-CCC--C-CCCc
Q 022227           80 --TGVNIAVMVGGFPRKEGMERKDV-MSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF-APS--I-PAKN  152 (300)
Q Consensus        80 --~~aDvVi~~ag~~~~~g~~r~dl-~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~-~~~--~-p~~~  152 (300)
                        +-.|..||....-..-|+..-.| ...|+..+.++.+..+++   +.++.|-| ........--+. .|.  + .++.
T Consensus       107 Vn~RIdWL~HfSALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~---kL~iFVPS-TIGAFGPtSPRNPTPdltIQRPRT  182 (366)
T KOG2774|consen  107 VNKRIDWLVHFSALLSAVGETNVPLALQVNIRGVHNILQVAAKH---KLKVFVPS-TIGAFGPTSPRNPTPDLTIQRPRT  182 (366)
T ss_pred             cccccceeeeHHHHHHHhcccCCceeeeecchhhhHHHHHHHHc---CeeEeecc-cccccCCCCCCCCCCCeeeecCce
Confidence              23567777422211123322222 356999999999999888   34454422 221111000000 011  1 1245


Q ss_pred             EEeeehhhHHHHHHHHHHHcCCCCCCeEEEEE
Q 022227          153 ITCLTRLDHNRALGQISEKLNVQVSDVKNVII  184 (300)
Q Consensus       153 i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V  184 (300)
                      |+|.++...+-+-..+-.++|++.+..+..-+
T Consensus       183 IYGVSKVHAEL~GEy~~hrFg~dfr~~rfPg~  214 (366)
T KOG2774|consen  183 IYGVSKVHAELLGEYFNHRFGVDFRSMRFPGI  214 (366)
T ss_pred             eechhHHHHHHHHHHHHhhcCccceecccCcc
Confidence            89999988777777888899999888874433

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=94.53  E-value=0.085  Score=52.35  Aligned_cols=136  Identities=15%  Similarity=0.207  Sum_probs=76.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHh-----cccCCCCCCeEEEEEecCCchhhhhhhhhh-hhhhccCCcccEEEeCChhhh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIAR-----GVMLGTDQPVILHMLDIPPAAEALNGVKME-LVDAAFPLLKGVVATTDAVEA   78 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~-----~~~~~~~~~~~l~L~D~~~~~~~l~g~~~d-l~~~~~~~~~~v~~~~~~~~a   78 (300)
                      ..||++.| +|..|..++..|+.     .|+-.++-...+.++|.+.   .+....-| +.+...++........++.++
T Consensus       321 d~riv~~G-AGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~G---Li~~~r~~~l~~~k~~fa~~~~~~~~L~e~  396 (581)
T PLN03129        321 DQRILFAG-AGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKG---LVTKSRKDSLQPFKKPFAHDHEPGASLLEA  396 (581)
T ss_pred             hceEEEEC-CCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCC---eEeCCCCccChHHHHHHHhhcccCCCHHHH
Confidence            36999999 79999999988876     3442111112689999753   11100011 211111111111123579999


Q ss_pred             cCC--CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch---hhHHHHHHHHCCCCCCCcE
Q 022227           79 CTG--VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA---NTNALILKEFAPSIPAKNI  153 (300)
Q Consensus        79 ~~~--aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~---~~~~~~~~~~~~~~p~~~i  153 (300)
                      +++  +|+.|=+.+.+   |           -+.+++++.|.++++ ..+|.-.|||.   .....-+.+...|  +--|
T Consensus       397 v~~vkptvLIG~S~~~---g-----------~Ft~evi~~Ma~~~~-rPIIFaLSNPt~~~E~~pe~a~~~T~G--~ai~  459 (581)
T PLN03129        397 VKAIKPTVLIGLSGVG---G-----------TFTKEVLEAMASLNE-RPIIFALSNPTSKAECTAEEAYTWTGG--RAIF  459 (581)
T ss_pred             HhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCC-CCEEEECCCCCCCcCcCHHHHHHhhcC--CEEE
Confidence            999  89887765433   2           123577888888886 46788889996   4455555554111  1124


Q ss_pred             EeeehhhH
Q 022227          154 TCLTRLDH  161 (300)
Q Consensus       154 ~~~t~ld~  161 (300)
                      .+|+-.+.
T Consensus       460 AtGSPf~p  467 (581)
T PLN03129        460 ASGSPFDP  467 (581)
T ss_pred             EeCCCCCC
Confidence            55655443

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.52  E-value=0.15  Score=42.90  Aligned_cols=55  Identities=16%  Similarity=0.286  Sum_probs=41.2

Q ss_pred             CCcEEEEEcCCCh-HHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQ-IGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~-vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      +..||+|+| +|. +|..++..|...+.       ++.+.+...                          .++.+.+++|
T Consensus        43 ~gk~vlViG-~G~~~G~~~a~~L~~~g~-------~V~v~~r~~--------------------------~~l~~~l~~a   88 (168)
T cd01080          43 AGKKVVVVG-RSNIVGKPLAALLLNRNA-------TVTVCHSKT--------------------------KNLKEHTKQA   88 (168)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHhhCCC-------EEEEEECCc--------------------------hhHHHHHhhC
Confidence            457999999 576 58889999887664       577776531                          1456778999


Q ss_pred             cEEEEeCCCC
Q 022227           83 NIAVMVGGFP   92 (300)
Q Consensus        83 DvVi~~ag~~   92 (300)
                      |+||.+-+.+
T Consensus        89 DiVIsat~~~   98 (168)
T cd01080          89 DIVIVAVGKP   98 (168)
T ss_pred             CEEEEcCCCC
Confidence            9999987655

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK06046 alanine dehydrogenase; Validated

Probab=94.49  E-value=0.21  Score=46.40  Aligned_cols=73  Identities=18%  Similarity=0.191  Sum_probs=48.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      .+.+|+|+| +|..|...+..+....-+.     ++.++|+++  ++++..+.++.+.   ....+....+..++++ +|
T Consensus       128 ~~~~vgiiG-~G~qa~~h~~al~~~~~i~-----~v~v~~r~~--~~~~~~~~~~~~~---~~~~v~~~~~~~~~l~-aD  195 (326)
T PRK06046        128 DSKVVGIIG-AGNQARTQLLALSEVFDLE-----EVRVYDRTK--SSAEKFVERMSSV---VGCDVTVAEDIEEACD-CD  195 (326)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHhhCCce-----EEEEECCCH--HHHHHHHHHHHhh---cCceEEEeCCHHHHhh-CC
Confidence            457899999 7999999887776432111     789999864  5555444444321   1123455567777786 99


Q ss_pred             EEEEe
Q 022227           84 IAVMV   88 (300)
Q Consensus        84 vVi~~   88 (300)
                      +|+++
T Consensus       196 iVv~a  200 (326)
T PRK06046        196 ILVTT  200 (326)
T ss_pred             EEEEe
Confidence            98875

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=94.47  E-value=0.24  Score=44.67  Aligned_cols=72  Identities=13%  Similarity=0.077  Sum_probs=45.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .++++|+| +|.+|..++..|+..+.       ++.++|++.  ++++..+.++....     .+...+.....+.++|+
T Consensus       117 ~k~vliiG-aGg~g~aia~~L~~~g~-------~v~v~~R~~--~~~~~la~~~~~~~-----~~~~~~~~~~~~~~~Di  181 (270)
T TIGR00507       117 NQRVLIIG-AGGAARAVALPLLKADC-------NVIIANRTV--SKAEELAERFQRYG-----EIQAFSMDELPLHRVDL  181 (270)
T ss_pred             CCEEEEEc-CcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHhhcC-----ceEEechhhhcccCccE
Confidence            46899999 69999999999987653       688888753  44444333332211     11111112234568999


Q ss_pred             EEEeCCC
Q 022227           85 AVMVGGF   91 (300)
Q Consensus        85 Vi~~ag~   91 (300)
                      ||.+.+.
T Consensus       182 vInatp~  188 (270)
T TIGR00507       182 IINATSA  188 (270)
T ss_pred             EEECCCC
Confidence            9998654

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=94.46  E-value=0.47  Score=40.83  Aligned_cols=34  Identities=21%  Similarity=0.422  Sum_probs=29.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      ..||+|+| +|.+|+.++..|+..|+ +     ++.++|.+
T Consensus        19 ~s~VlviG-~gglGsevak~L~~~GV-g-----~i~lvD~d   52 (198)
T cd01485          19 SAKVLIIG-AGALGAEIAKNLVLAGI-D-----SITIVDHR   52 (198)
T ss_pred             hCcEEEEC-CCHHHHHHHHHHHHcCC-C-----EEEEEECC
Confidence            46999999 68899999999999886 3     78999865

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=94.46  E-value=0.082  Score=48.31  Aligned_cols=67  Identities=13%  Similarity=0.109  Sum_probs=44.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      ..+|+|+| .|.+|..++..|...|.       ++.++|+++  +++.. ..+.  ..    ..+ ...++.+.++++|+
T Consensus       151 gk~v~IiG-~G~iG~avA~~L~~~G~-------~V~v~~R~~--~~~~~-~~~~--g~----~~~-~~~~l~~~l~~aDi  212 (287)
T TIGR02853       151 GSNVMVLG-FGRTGMTIARTFSALGA-------RVFVGARSS--ADLAR-ITEM--GL----IPF-PLNKLEEKVAEIDI  212 (287)
T ss_pred             CCEEEEEc-ChHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHH-HHHC--CC----eee-cHHHHHHHhccCCE
Confidence            46999999 79999999999987664       688998863  22211 1110  00    001 11245677899999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      ||.+.
T Consensus       213 Vint~  217 (287)
T TIGR02853       213 VINTI  217 (287)
T ss_pred             EEECC
Confidence            99975

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=94.43  E-value=0.19  Score=49.95  Aligned_cols=64  Identities=20%  Similarity=0.116  Sum_probs=44.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .++|+|+| .|.||+.++..|..-|+       ++..+|.....+.    ..++         .+...+++.+.+++||+
T Consensus       138 gktvgIiG-~G~IG~~vA~~l~~fG~-------~V~~~d~~~~~~~----~~~~---------g~~~~~~l~ell~~aDv  196 (525)
T TIGR01327       138 GKTLGVIG-LGRIGSIVAKRAKAFGM-------KVLAYDPYISPER----AEQL---------GVELVDDLDELLARADF  196 (525)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEECCCCChhH----HHhc---------CCEEcCCHHHHHhhCCE
Confidence            46999999 89999999999886554       7899997421111    1111         11222367888999999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      |+++.
T Consensus       197 V~l~l  201 (525)
T TIGR01327       197 ITVHT  201 (525)
T ss_pred             EEEcc
Confidence            99875

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	300
4mdh_A	334	Refined Crystal Structure Of Cytoplasmic Malate Deh		3e-86
5mdh_A	333	Crystal Structure Of Ternary Complex Of Porcine Cyt		3e-86
4h7p_A	345	Crystal Structure Of A Putative Cytosolic Malate De		2e-70
1iz9_A	327	Crystal Structure Of Malate Dehydrogenase From Ther		1e-68
1bmd_A	327	Determinants Of Protein Thermostability Observed In		2e-68
1b8p_A	329	Malate Dehydrogenase From Aquaspirillum Arcticum Le		4e-68
1bdm_A	327	The Structure At 1.8 Angstroms Resolution Of A Sing		5e-68
3d5t_A	331	Crystal Structure Of Malate Dehydrogenase From Burk		6e-68
1wze_A	327	Structural Basis For Alteration Of Cofactor Specifi		2e-66
7mdh_A	375	Structural Basis For Light Acitvation Of A Chloropl		8e-51
1civ_A	385	Chloroplast Nadp-Dependent Malate Dehydrogenase Fro		8e-50
3fi9_A	343	Crystal Structure Of Malate Dehydrogenase From Porp		7e-16
3gvh_A	324	Crystal Structure Of LactateMALATE DEHYDROGENASE FR		2e-11
3nep_X	314	1.55a Resolution Structure Of Malate Dehydrogenase		9e-10
1mld_A	314	Refined Structure Of Mitochondrial Malate Dehydroge		6e-08
2dfd_A	342	Crystal Structure Of Human Malate Dehydrogenase Typ		9e-08
1hyg_A	313	Crystal Structure Of Mj0490 Gene Product, The Famil		3e-07
1gv1_A	310	Structural Basis For Thermophilic Protein Stability		5e-07
1sev_A	362	Mature And Translocatable Forms Of Glyoxysomal Mala		5e-07
1smk_A	326	Mature And Translocatable Forms Of Glyoxysomal Mala		5e-07
1guz_A	310	Structural Basis For Thermophilic Protein Stability		6e-07
2hjr_A	328	Crystal Structure Of Cryptosporidium Parvum Malate		7e-07
1gv0_A	310	Structural Basis For Thermophilic Protein Stability		1e-06
2pwz_A	312	Crystal Structure Of The Apo Form Of E.Coli Malate		2e-06
3p7m_A	321	Structure Of Putative Lactate Dehydrogenase From Fr		2e-06
1emd_A	312	Crystal Structure Of A Ternary Complex Of Escherich		2e-06
1ez4_A	318	Crystal Structure Of Non-Allosteric L-Lactate Dehyd		5e-06
4e0b_A	313	2.17 Angstrom Resolution Crystal Structure Of Malat		7e-06
2v65_A	331	Apo Ldh From The Psychrophile C. Gunnari Length = 3		7e-06
1ib6_A	312	Crystal Structure Of R153c E. Coli Malate Dehydroge		1e-05
1v6a_A	332	Crystal Structure Of L-Lactate Dehydrogenase From C		2e-05
2j5k_A	304	2.0 A Resolution Structure Of The Wild Type Malate		2e-05
2hlp_A	303	Crystal Structure Of The E267r Mutant Of A Halophil		2e-05
2x0r_A	304	R207s,R292s Mutant Of Malate Dehydrogenase From The		2e-05
1y6j_A	318	L-Lactate Dehydrogenase From Clostridium Thermocell		2e-05
1hlp_A	303	Structural Features Stabilizing Halophilic Malate D		2e-05
1o6z_A	303	1.95 A Resolution Structure Of (r207s,r292s) Mutant		2e-05
1guy_A	309	Structural Basis For Thermophilic Protein Stability		3e-05
1uxh_A	309	Large Improvement In The Thermal Stability Of A Tet		3e-05
2x0i_A	294	2.9 A Resolution Structure Of Malate Dehydrogenase		3e-05
1uxi_A	309	Large Improvement In The Thermal Stability Of A Tet		3e-05
6ldh_A	330	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		5e-05
1ldm_A	329	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		5e-05
5ldh_A	334	Structure Of The Active Ternary Complex Of Pig Hear		6e-05
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		7e-05
2ldx_A	331	Characterization Of The Antigenic Sites On The Refi		1e-04
1ur5_A	309	Stabilization Of A Tetrameric Malate Dehydrogenase		1e-04
3pqd_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		2e-04
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		3e-04
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		3e-04
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		3e-04
3pqe_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		3e-04
1t2f_A	333	Human B Lactate Dehydrogenase Complexed With Nad+ A		4e-04
1i0z_A	333	Human Heart L-Lactate Dehydrogenase H Chain, Ternar		5e-04
2zqy_A	326	T-State Structure Of Allosteric L-Lactate Dehydroge		5e-04
1llc_A	325	Structure Determination Of The Allosteric L-Lactate		7e-04
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		7e-04
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		7e-04
2a92_A	321	Crystal Structure Of Lactate Dehydrogenase From Pla		8e-04

>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase At 2.5-Angstroms Resolution Length = 334

Iteration: 1
 Score =  315 bits (806), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 153/261 (58%), Positives = 185/261 (70%)
Query: 4   EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
           EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A 
Sbjct: 3   EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 62
Query: 64  PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
           PLLK V+AT     A   +++A++VG  PR++GMERKD++  NV I+K Q +AL+++A  
Sbjct: 63  PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 122
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
           + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVI
Sbjct: 123 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVI 182
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXX 243
           IWGNHSS+QYPDVNHA V   A E  V E VKDD+WL GEFITTVQQRGAA+IKARK   
Sbjct: 183 IWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 242
Query: 244 XXXXXXXXCDHIRDWVLGTPE 264
                   CDH+RD   GTPE
Sbjct: 243 AMSAAKAICDHVRDIWFGTPE 263

>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And Tnad At 2.4 Angstroms Resolution Length = 333

Iteration: 1
 Score =  315 bits (806), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 153/261 (58%), Positives = 185/261 (70%)
Query: 4   EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
           EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A 
Sbjct: 2   EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 61
Query: 64  PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
           PLLK V+AT     A   +++A++VG  PR++GMERKD++  NV I+K Q +AL+++A  
Sbjct: 62  PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 121
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
           + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVI
Sbjct: 122 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVI 181
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXX 243
           IWGNHSS+QYPDVNHA V   A E  V E VKDD+WL GEFITTVQQRGAA+IKARK   
Sbjct: 182 IWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 241
Query: 244 XXXXXXXXCDHIRDWVLGTPE 264
                   CDH+RD   GTPE
Sbjct: 242 AMSAAKAICDHVRDIWFGTPE 262

>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345

Iteration: 1
 Score =  262 bits (669), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 139/260 (53%), Positives = 172/260 (66%), Gaps = 6/260 (2%)
Query: 6   VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
           V+V VTGAAGQIGYALVP+IARG +LG   PV L +LDI PA +AL GV+ EL D AFPL
Sbjct: 25  VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPL 84
Query: 66  LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
           L  VV T D   A  GV IA+M G FPRK GMERKD++  N  I+K Q  A+   AA +C
Sbjct: 85  LDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDC 144
Query: 126 KVLVVANPANTNALI-LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVII 184
           +V+VV NPANTNALI LK     +  +++T +TRLDHNRAL  ++ K  V VS V+NVII
Sbjct: 145 RVVVVGNPANTNALILLKSAQGKLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVII 204
Query: 185 WGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXX 244
           WGNHSS+Q PD + A + T     P RE +KDDA L+ +F+  V+ RGA II+ R     
Sbjct: 205 WGNHSSTQVPDTDSAVIGTT----PAREAIKDDA-LDDDFVQVVRGRGAEIIQLRGLSSA 259
Query: 245 XXXXXXXCDHIRDWVLGTPE 264
                   DH+ DW+ GTPE
Sbjct: 260 MSAAKAAVDHVHDWIHGTPE 279

>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327

Iteration: 1
 Score =  256 bits (653), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 136/262 (51%), Positives = 169/262 (64%), Gaps = 5/262 (1%)
Query: 3   KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
           K PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L+IP A +AL GV MEL D A
Sbjct: 2   KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 63  FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
           FPLL G+ AT D   A    + A++VG  PRK GMER+D++  N  I+  Q  AL + A 
Sbjct: 62  FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
            + KVLVV NPANTNALI  + AP +  +N T +TRLDHNRA  Q+++K    V  ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXX 242
            +WGNHSS+ +PD+ HA V+     +P  ELV D  W    FI TV QRGAAII+AR   
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 243 XXXXXXXXXCDHIRDWVLGTPE 264
                     +HIRDW LGTPE
Sbjct: 237 SAASAANAAIEHIRDWALGTPE 258

>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327

Iteration: 1
 Score =  255 bits (652), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 136/262 (51%), Positives = 169/262 (64%), Gaps = 5/262 (1%)
Query: 3   KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
           K PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L+IP A +AL GV MEL D A
Sbjct: 2   KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 63  FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
           FPLL G+ AT D   A    + A++VG  PRK GMER+D++  N  I+  Q  AL + A 
Sbjct: 62  FPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
            + KVLVV NPANTNALI  + AP +  +N T +TRLDHNRA  Q+++K    V  ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXX 242
            +WGNHSS+ +PD+ HA V+     +P  ELV D  W    FI TV QRGAAII+AR   
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 243 XXXXXXXXXCDHIRDWVLGTPE 264
                     +HIRDW LGTPE
Sbjct: 237 SAASAANAAIEHIRDWALGTPE 258

>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum Length = 329

Iteration: 1
 Score =  254 bits (650), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 133/264 (50%), Positives = 171/264 (64%), Gaps = 6/264 (2%)
Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMEL 58
           MAK P+RV VTGAAGQI Y+L+  IA G MLG DQPVIL +L+IP   A +AL GV ME+
Sbjct: 1   MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEI 60
Query: 59  VDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALE 118
            D AFPLL G+ A  D + A    ++A++VG  PR  GMERKD++  N  I+  Q  A++
Sbjct: 61  DDCAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120
Query: 119 QHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSD 178
             A+ N KVLVV NPANTNA I  + APS+PAKN T + RLDHNRAL QI+ K    VS 
Sbjct: 121 AVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSS 180
Query: 179 VKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKA 238
           ++ + +WGNHS + Y D  +A ++ A+    V++++ DDAW    F+ TV +RGAAII A
Sbjct: 181 IEKLFVWGNHSPTMYADYRYAQIDGAS----VKDMINDDAWNRDTFLPTVGKRGAAIIDA 236
Query: 239 RKXXXXXXXXXXXCDHIRDWVLGT 262
           R             DHI DWVLGT
Sbjct: 237 RGVSSAASAANAAIDHIHDWVLGT 260

>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327

Iteration: 1
 Score =  254 bits (648), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 136/262 (51%), Positives = 168/262 (64%), Gaps = 5/262 (1%)
Query: 3   KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
           K PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L+IP A +AL GV MEL D A
Sbjct: 2   KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 63  FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
           FPLL G+ AT D   A    + A++VG  PRK GMER+D++  N  I+  Q  AL + A 
Sbjct: 62  FPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
            + KVLVV NPANTNALI  + AP +  +N T +TRLDHNRA  Q+++K    V  ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXX 242
            +WGNHSS  +PD+ HA V+     +P  ELV D  W    FI TV QRGAAII+AR   
Sbjct: 182 TVWGNHSSIMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 243 XXXXXXXXXCDHIRDWVLGTPE 264
                     +HIRDW LGTPE
Sbjct: 237 SAASAANAAIEHIRDWALGTPE 258

>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From Burkholderia Pseudomallei Length = 331

Iteration: 1
 Score =  253 bits (647), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 140/285 (49%), Positives = 176/285 (61%), Gaps = 13/285 (4%)
Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           MAK   RV VTGAAGQI Y+L+  IA G +LG DQPVIL +LD+P A  A+ GV MEL D
Sbjct: 5   MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDD 64
Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
            AFPLL GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q +AL + 
Sbjct: 65  CAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEV 124
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
           A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    V+ ++
Sbjct: 125 ASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIE 184
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
            + +WGNHS + YPD   A   TA GE  ++ L+ DD W    FI TV +RGAAII+AR 
Sbjct: 185 KLAVWGNHSPTMYPDFRFA---TAEGESLLK-LINDDVWNRDTFIPTVGKRGAAIIEARG 240
Query: 241 XXXXXXXXXXXCDHIRDWVLGT---------PEVGSLLIFTPMIY 276
                       DH+RDWVLGT         P  GS  I   +IY
Sbjct: 241 LSSAASAANAAIDHVRDWVLGTNGKWVTMGIPSDGSYGIPEDIIY 285

>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327

Iteration: 1
 Score =  249 bits (635), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 133/262 (50%), Positives = 166/262 (63%), Gaps = 5/262 (1%)
Query: 3   KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
           K PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L    + +AL GV MEL D A
Sbjct: 2   KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLGSERSFQALEGVVMELEDCA 61
Query: 63  FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
           FPLL G+ AT D   A    + A++VG  PRK GMER+D++  N  I+  Q  AL + A 
Sbjct: 62  FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
            + KVLVV NPANTNALI  + AP +  +N T +TRLDHNRA  Q+++K    V  ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXX 242
            +WGNHSS+ +PD+ HA V+     +P  ELV D  W    FI TV QRGAAII+AR   
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 243 XXXXXXXXXCDHIRDWVLGTPE 264
                     +HIRDW LGTPE
Sbjct: 237 SAASAANAAIEHIRDWALGTPE 258

>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast Enzyme. The Structure Of Sorghum Nadp-Malate Dehydrogenase In Its Oxidized Form Length = 375

Iteration: 1
 Score =  197 bits (500), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 116/275 (42%), Positives = 155/275 (56%), Gaps = 7/275 (2%)
Query: 3   KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
           K+ V + V+GAAG I   L+  +A G + G DQP+ L +L    + +AL GV MEL D+ 
Sbjct: 30  KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSL 89
Query: 63  FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
           +PLL+ V    D  E    V+ A+++G  PR  GMER  ++  N  I+  Q  AL   A+
Sbjct: 90  YPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVAS 149
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
            N KVLVV NP NTNALI  + AP IPAKN   LTRLD NRA  Q++ K  V    V NV
Sbjct: 150 KNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNV 209
Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXX 242
            IWGNHS++Q PD  +A ++     +PV+E++K   WL  EF  TVQ+RG A+I+     
Sbjct: 210 TIWGNHSTTQVPDFLNAKIDG----RPVKEVIKRTKWLEEEFTITVQKRGGALIQKWGRS 265
Query: 243 XXXXXXXXXCDHIRDWVLGTPEVGSLLIFTPMIYT 277
                     D I+  V  TPE G    F+  +YT
Sbjct: 266 SAASTAVSIADAIKSLVTPTPE-GDW--FSTGVYT 297

>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385

Iteration: 1
 Score =  193 bits (491), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 111/262 (42%), Positives = 144/262 (54%), Gaps = 4/262 (1%)
Query: 3   KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
           K+ + V V+GAAG I   L+  +A G + G DQP+ L +L    +  AL GV MEL D+ 
Sbjct: 40  KKIINVAVSGAAGMISNHLLFKLASGEVFGPDQPISLKLLGSERSFAALEGVAMELEDSL 99
Query: 63  FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
           +PLL+ V    D  E       A+++G  PR  GMER D++  N  I+  Q  AL   A+
Sbjct: 100 YPLLRQVSIGIDPYEIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVAS 159
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
           PN KV+VV NP NTNALI  + AP+IP KN   LTRLD NRA  Q++ K  V    V NV
Sbjct: 160 PNVKVMVVGNPCNTNALICLKNAPNIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNV 219
Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXX 242
            IWGNHS++Q PD  +A ++      PV E+++D  WL  EF   VQ RG  +IK     
Sbjct: 220 TIWGNHSTTQVPDFLNAKIHGI----PVTEVIRDRKWLEDEFTNMVQTRGGVLIKKWGRS 275
Query: 243 XXXXXXXXXCDHIRDWVLGTPE 264
                     D IR  V  TPE
Sbjct: 276 SAASTAVSIVDAIRSLVTPTPE 297

>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343

Iteration: 1
 Score = 80.9 bits (198), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 108/237 (45%), Gaps = 18/237 (7%)
Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
           ++ + GAAG IG  +    A   M+     + L+     P A  L GV  E+    F  L
Sbjct: 10  KLTIVGAAGMIGSNMAQTAA---MMRLTPNLCLY----DPFAVGLEGVAEEIRHCGFEGL 62
Query: 67  KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
             +  T+D  EA T     V  GG PRKEGM R+D++  N  I  AQ     +   P+CK
Sbjct: 63  N-LTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEI-AAQLGKDIKSYCPDCK 120
Query: 127 -VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIW 185
            V+++ NPA+   L+   ++   P++ +T L  LD  R   ++++   ++ S V N   +
Sbjct: 121 HVIIIFNPADITGLVTLIYSGLKPSQ-VTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTY 179
Query: 186 GNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLN---GEFITTVQQRGAAIIKAR 239
           G H        + A VN      P+ +L+  D   N    E    V + GA IIK R
Sbjct: 180 GGHGEQMAVFASTAKVNGT----PLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR 232

>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 9/155 (5%)
Query: 78  ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN 137
           A  G ++ ++  G PRK GM R D++  N+ + +   + ++++ AP   V+ + NP +  
Sbjct: 72  AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY-APEAFVICITNPLDAM 130
Query: 138 ALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDV 196
              L++F+  +PA  +  +   LD  R    +SE+ NV V DV  V + G H  S  P  
Sbjct: 131 VWALQKFS-GLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDV-TVFVLGGHGDSMVPLA 188
Query: 197 NHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQR 231
            ++TV       P+ +LVK   W + + +  + QR
Sbjct: 189 RYSTVAGI----PLPDLVK-MGWTSQDKLDKIIQR 218

>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 83  NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQ--HAAPNCKVLVVANPANTNALI 140
           ++ ++  G PR  GM R D+++KN  I        EQ    +P+  ++VVANP +    +
Sbjct: 71  DVCIITAGLPRSPGMSRDDLLAKNTEIV---GGVTEQFVEGSPDSTIIVVANPLDVMTYV 127
Query: 141 LKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHA 199
             E A   P   +  +   LD  R    I+E+L+V V DV+  ++ G H  +  P   + 
Sbjct: 128 AYE-ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQ-ALLMGGHGDTMVPLPRYT 185
Query: 200 TVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAII 236
           TV    G  PV +L+ DDA +  E +   +  G  I+
Sbjct: 186 TV----GGIPVPQLI-DDARIE-EIVERTKGAGGEIV 216

>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 107/243 (44%), Gaps = 37/243 (15%)
Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDI---PPAAEALNGVKMELVDA 61
           +V V GA+G IG  L        +L  + P++  L + DI   P  A  L+ ++      
Sbjct: 2   KVAVLGASGGIGQPLS-------LLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRAT-- 52
Query: 62  AFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA 121
               +KG +      +   G ++ V+  G PRK GM R D+ + N +I     +A  QH 
Sbjct: 53  ----VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH- 107
Query: 122 APNCKVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVS 177
            P+  + +++NP N+     A + K+     P K I  +T LD  RA   ++E   +  +
Sbjct: 108 CPDAMICIISNPVNSTIPITAEVFKKHGVYNPNK-IFGVTTLDIVRANAFVAELKGLDPA 166
Query: 178 DVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD-AWLNGEFITTVQQRGAAII 236
            V   +I G+   +  P ++  T        P  +  +D  + L G     +Q+ G  ++
Sbjct: 167 RVSVPVIGGHAGKTIIPLISQCT--------PKVDFPQDQLSTLTGR----IQEAGTEVV 214
Query: 237 KAR 239
           KA+
Sbjct: 215 KAK 217

>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 108/248 (43%), Gaps = 37/248 (14%)
Query: 2   AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDI---PPAAEALNGVKM 56
           A+   +V V GA+G IG  L        +L  + P++  L + DI   P  A  L+ ++ 
Sbjct: 25  AQNNAKVAVLGASGGIGQPLS-------LLLKNSPLVSRLTLYDIAHTPGVAADLSHIET 77
Query: 57  ELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASA 116
           +        +KG +      +   G ++ V+  G PRK GM R D+ + N +I     +A
Sbjct: 78  KAA------VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAA 131
Query: 117 LEQHAAPNCKVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKL 172
             QH  P   + V+ANP N+     A + K+     P K I  +T LD  RA   ++E  
Sbjct: 132 CAQH-CPEAMICVIANPVNSTIPITAEVFKKHGVYNPNK-IFGVTTLDIVRANTFVAELK 189
Query: 173 NVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD-AWLNGEFITTVQQR 231
            +  + V   +I G+   +  P ++  T        P  +  +D    L G     +Q+ 
Sbjct: 190 GLDPARVNVPVIGGHAGKTIIPLISQCT--------PKVDFPQDQLTALTGR----IQEA 237
Query: 232 GAAIIKAR 239
           G  ++KA+
Sbjct: 238 GTEVVKAK 245

>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 31/245 (12%)
Query: 6   VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMELVDAAF 63
           ++V + GA+G++G A   ++A+       +P +  L ++    +   L G++ ++ DA  
Sbjct: 1   MKVTIIGASGRVGSATALLLAK-------EPFMKDLVLIGREHSINKLEGLREDIYDA-- 51
Query: 64  PLLKGV-------VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASA 116
             L G        V + + +      ++ ++  G PRKEGM R D+   N  I    A  
Sbjct: 52  --LAGTRSDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKK 109
Query: 117 LEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN--ITCLTRLDHNRALGQISEKLNV 174
           + +    + K+ V+ NP   + +  K    S   +N      T LD  R    I++   V
Sbjct: 110 IAEIC--DTKIFVITNP--VDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGV 165
Query: 175 QVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAA 234
            + +V+  II G H  S  P ++     T+ G  P+++  +       E I  V+ +G  
Sbjct: 166 HIDEVRTRII-GEHGDSMVPLLSA----TSIGGIPIQKFERFKELPIDEIIEDVKTKGEQ 220
Query: 235 IIKAR 239
           II+ +
Sbjct: 221 IIRLK 225

>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 83  NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142
           +I ++  G PRK GM R+D++ KN  I K     + +H+  N  ++VV+NP +    I+ 
Sbjct: 71  DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLD----IMT 125
Query: 143 EFA---PSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNH 198
             A     +P + +  +   LD  R    I+ +L V + D+ N  + G H  +  P V +
Sbjct: 126 HVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDI-NACVLGGHGDAMVPVVKY 184
Query: 199 ATV 201
            TV
Sbjct: 185 TTV 187

>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 21/190 (11%)
Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMEL--VDAA 62
           +V + GAAG IG  L        ML    P++  LH+ D+  A     GV  ++  +D  
Sbjct: 46  KVAILGAAGGIGQPLA-------MLMKMNPLVSVLHLYDVVNAP----GVTADISHMDTG 94
Query: 63  FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
             +++G +       A TG+++ ++  G PRK GM R D+   N  I K     + +   
Sbjct: 95  -AVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAK-CC 152
Query: 123 PNCKVLVVANPANTNALILKEF---APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDV 179
           P   V +++NP N+   I  E    A +   K +  +T LD  RA   ++E L +   DV
Sbjct: 153 PRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDV 212
Query: 180 KNVIIWGNHS 189
            +V + G H+
Sbjct: 213 -DVPVVGGHA 221

>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 21/191 (10%)
Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMEL--VDAA 62
           +V + GAAG IG  L        ML    P++  LH+ D+  A     GV  ++  +D  
Sbjct: 10  KVAILGAAGGIGQPLA-------MLMKMNPLVSVLHLYDVVNAP----GVTADISHMDTG 58
Query: 63  FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
             +++G +       A TG+++ ++  G PRK GM R D+   N  I K     + +   
Sbjct: 59  -AVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAK-CC 116
Query: 123 PNCKVLVVANPANTNALILKEF---APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDV 179
           P   V +++NP N+   I  E    A +   K +  +T LD  RA   ++E L +   DV
Sbjct: 117 PRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDV 176
Query: 180 KNVIIWGNHSS 190
            +V + G H+ 
Sbjct: 177 -DVPVVGGHAG 186

>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 83  NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142
           +I ++  G PRK GM R+D++ KN  I K     + +H+  N  ++VV+NP +    I+ 
Sbjct: 71  DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLD----IMT 125
Query: 143 EFA---PSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNH 198
             A     +P + +  +   LD  R    I+ +L V + D+ N  + G H  +  P V +
Sbjct: 126 HVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDI-NACVLGGHGDAMVPVVKY 184
Query: 199 ATV 201
            TV
Sbjct: 185 TTV 187

>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 97/236 (41%), Gaps = 29/236 (12%)
Query: 13  AAGQIGYALVPMIARGVMLGTDQPVILHMLDI---PPAAEALN-GVKMELVDAAFPLLKG 68
            AGQIG  +       ++LG      ++M DI    P  +AL+    M L+ +   +   
Sbjct: 21  GAGQIGSTI------ALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIF-- 72
Query: 69  VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128
                +  E     ++ ++  G PRK  M R D+++ N  I  + A  + ++  PN  V+
Sbjct: 73  ---GENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKY-CPNAFVI 128
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGN 187
            + NP +      KE    IPA  +  ++  LD  R    +S  L V+ SDV + I+ G 
Sbjct: 129 CITNPLDAMVYYFKE-KSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDV-SAIVVGG 186
Query: 188 HSSSQYPDVNHATV----------NTAAGEKPVRELVKDDAWLNGEFITTVQQRGA 233
           H     P  +  T+                  + E++K  A+  GE +  ++   A
Sbjct: 187 HGDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELLKTGSA 242

>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 83  NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142
           +I V+  G PRK GM R+D++S N  I +     + +H + N  ++VV+NP +    I+ 
Sbjct: 71  DIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEH-SKNPIIVVVSNPLD----IMT 125
Query: 143 EFA---PSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNH 198
             A     +P + +  +   LD  R    I+ +L V + DV    + G H  +  P V +
Sbjct: 126 HVAWQKSGLPKERVIGMAGVLDSARFRSFIAMELGVSMQDV-TACVLGGHGDAMVPVVKY 184
Query: 199 ATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
            TV   AG  PV +L+   A    E +   +  GA I+   K
Sbjct: 185 TTV---AG-IPVADLIS--AERIAELVERTRTGGAEIVNHLK 220

>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 25/206 (12%)
Query: 6   VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
           ++V V GAAG IG AL  ++   +  G++    L + DI P    +  V +  +  A  +
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTPGV-AVDLSHIPTAVKI 55
Query: 66  LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
            KG  +  DA  A  G ++ ++  G  RK GM+R D+ + N  I K     L Q  A  C
Sbjct: 56  -KGF-SGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVK----NLVQQVAKTC 109
Query: 126 K---VLVVANPANTNALILKEF--APSIPAKN-ITCLTRLDHNRALGQISEKLNVQVSDV 179
               + ++ NP NT   I  E      +  KN +  +T LD  R+   ++E    Q  +V
Sbjct: 110 PKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEV 169
Query: 180 KNVIIWGNHSS-------SQYPDVNH 198
           + V + G HS        SQ P V+ 
Sbjct: 170 E-VPVIGGHSGVTILPLLSQVPGVSF 194

>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 83  NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142
           ++ ++  G PRK G  R D++  N+ + +     + +H  PN  V+ + NP +     L+
Sbjct: 75  DVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGI-KHNCPNAFVICITNPLDIXVNXLQ 133
Query: 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 202
           +F+     K +     LD  R    ++++LNV V  V+   + G H  +  P    + V 
Sbjct: 134 KFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQ-AYVXGGHGDTXVPLTKXSNVA 192
Query: 203 TAAGEKPVRE 212
             + E+ V+E
Sbjct: 193 GVSLEQLVKE 202

>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 25/206 (12%)
Query: 6   VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
           ++V V GAAG IG AL  ++   +  G++    L + DI P    +  V +  +  A  +
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTPGV-AVDLSHIPTAVKI 55
Query: 66  LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
            KG  +  DA  A  G ++ ++  G  RK GM+R D+ + N  I K     L Q  A  C
Sbjct: 56  -KGF-SGEDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVK----NLVQQVAKTC 109
Query: 126 K---VLVVANPANTNALILKEF--APSIPAKN-ITCLTRLDHNRALGQISEKLNVQVSDV 179
               + ++ NP NT   I  E      +  KN +  +T LD  R+   ++E    Q  +V
Sbjct: 110 PKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEV 169
Query: 180 KNVIIWGNHSS-------SQYPDVNH 198
           + V + G HS        SQ P V+ 
Sbjct: 170 E-VPVIGGHSGVTILPLLSQVPGVSF 194

>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate Dehydrogenase From Lactobacillus Pentosus At 2.3 Angstrom Resolution Length = 318

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 79  CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA 138
           C   ++ V+  G P+K G  R D+++KN++I  +    +          LV ANP +   
Sbjct: 70  CKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGI-FLVAANPVDILT 128
Query: 139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNH 198
               +F+     + I   T LD +R    + ++ NV    V +  I G H  S++   + 
Sbjct: 129 YATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSV-DAYIMGEHGDSEFAAYST 187
Query: 199 ATVNTAAGEKPVRELVKD 216
           AT+ T    +PVR++ K+
Sbjct: 188 ATIGT----RPVRDVAKE 201

>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 18/190 (9%)
Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL- 65
           +V V GAAG IG AL  ++   +  G+D    L + DI P      GV  +L  +  P  
Sbjct: 5   KVAVIGAAGGIGQALALLLKNRLPAGSD----LALYDIAPVTP---GVAADL--SHIPTH 55
Query: 66  --LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
             +KG  A  D   A  G ++ ++  G  RK G +R D+ + N  I K+ A  +     P
Sbjct: 56  VSIKG-YAGEDPTPALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAV-VCP 113
Query: 124 NCKVLVVANPANTNALILKEF---APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
           N  + ++ NP NT   I  E    A     + +  +T LD  R+   ++E       +V+
Sbjct: 114 NACIGIITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVR 173
Query: 181 NVIIWGNHSS 190
            V + G HS 
Sbjct: 174 -VPVIGGHSG 182

>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 5/156 (3%)
Query: 39  LHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGME 98
           L M+D+    + L G  M+L   +  L   +V   D         + V+  G  ++EG  
Sbjct: 48  LAMVDV--MEDKLKGEVMDLQHGSLFLKTKIVGDKD-YSVTANSKVVVVTAGARQQEGES 104
Query: 99  RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR 158
           R +++ +NV+I+K     + ++ +PNC ++VV+NP +    +  + +     + I   T 
Sbjct: 105 RLNLVQRNVNIFKFIIPNIVKY-SPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTN 163
Query: 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 194
           LD  R    I EKL++  S     I+ G H  S  P
Sbjct: 164 LDSARFRHLIGEKLHLHPSSCHAWIV-GEHGDSSVP 198

>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 6   VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
           ++V V GAAG IG AL  ++   +  G++    L + DI P    +  V +  +  A  +
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTPGV-AVDLSHIPTAVKI 55
Query: 66  LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
            KG  +  DA  A  G ++ ++  G  RK GM+R D+ + N  I K     L Q  A  C
Sbjct: 56  -KGF-SGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVK----NLVQQVAKTC 109
Query: 126 K---VLVVANPANTNALILKE 143
               + ++ NP NT   I  E
Sbjct: 110 PKACIGIITNPVNTTVAIAAE 130

>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Query: 49  EALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS 108
           + L G  M+L   +  L    +             + V+  G  ++EG  R +++ +NV+
Sbjct: 56  DKLKGEAMDLQHGSLFLKTHKIVADKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVN 115
Query: 109 IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQI 168
           I+K     + ++ +PNC +LVV+NP +    +  + +     + I   T LD  R    +
Sbjct: 116 IFKFIIPNIIKY-SPNCILLVVSNPVDILTYVAWKLSGLPRNRVIGSGTNLDSARFRHLM 174
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYP 194
            EKL +  S+    +I G H  S  P
Sbjct: 175 GEKLGIHPSNCHGWVI-GEHGDSSVP 199

>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 75  AVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134
             E   G ++ V+  G PR+ G  R D+   N  I +   S+L++H   +   L  +NP 
Sbjct: 65  GYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPV 123
Query: 135 NTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 194
           +     L E       + I    RLD  R    +SE+ +  V +V+  I+ G H  +Q P
Sbjct: 124 DLLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 182

>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 75  AVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134
             E   G ++ V+  G PR+ G  R D+   N  I +   S+L++H   +   L  +NP 
Sbjct: 64  GYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPV 122
Query: 135 NTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 194
           +     L E       + I    RLD  R    +SE+ +  V +V+  I+ G H  +Q P
Sbjct: 123 DLLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 181

>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 75  AVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134
             E   G ++ V+  G PR+ G  R D+   N  I +   S+L++H   +   L  +NP 
Sbjct: 65  GYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPV 123
Query: 135 NTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 194
           +     L E       + I    RLD  R    +SE+ +  V +V+  I+ G H  +Q P
Sbjct: 124 DLLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 182

>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 83  NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142
           ++ V+  G  RK G  R D+  KNV I K     + ++      +LVV+NP +    +++
Sbjct: 76  DVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGV-ILVVSNPVDIITYMIQ 134
Query: 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 194
           +++     K I   T LD  R    +SEKL V V +V   II G H  SQ P
Sbjct: 135 KWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYII-GEHGDSQLP 185

>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 75  AVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134
             E   G ++ V+  G PR+ G  R D+   N  I +   S+L++H   +   L  +NP 
Sbjct: 64  GYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPV 122
Query: 135 NTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 194
           +     L E       + I    RLD  R    +SE+ +  V +V+  I+ G H  +Q P
Sbjct: 123 DLLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 181

>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 75  AVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134
             E   G ++ V+  G PR+ G  R D+   N  I +   S+L++H   +   L  +NP 
Sbjct: 64  GYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPV 122
Query: 135 NTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 194
           +     L E       + I    RLD  R    +SE+ +  V +V+  I+ G H  +Q P
Sbjct: 123 DLLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 181

>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 83  NIAVMVGGFPRKEGMERKDVMSKNVSIYKA---QASALEQHAAPNCKVLVVANPANTNAL 139
           ++ V+  G PRK GM R+D++  N  I +A   QA+ L    +PN  +++V NP +    
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAMTY 127
Query: 140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHA 199
           +  E +     + I     LD  R    I+ +  V V DV+  ++ G H     P    +
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQ-AMLMGGHGDEMVPLPRFS 186
Query: 200 TVNTAAGEKPVRELVKDD 217
           T++      PV E +  D
Sbjct: 187 TISGI----PVSEFIAPD 200

>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 83  NIAVMVGGFPRKEGMERKDVMSKNVSIYKA---QASALEQHAAPNCKVLVVANPANTNAL 139
           ++ V+  G PRK GM R+D++  N  I +A   QA+ L    +PN  +++V NP +    
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAMTY 127
Query: 140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHA 199
           +  E +     + I     LD  R    I+ +  V V DV+  ++ G H     P    +
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQ-AMLMGGHGDEMVPLPRFS 186
Query: 200 TVNTAAGEKPVRELVKDD 217
           T++      PV E +  D
Sbjct: 187 TISGI----PVSEFIAPD 200

>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 10/116 (8%)
Query: 81  GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI 140
           G  I V+  G  RK GM R D+  KN  I K  A  + ++A P  K+LVV NP +    I
Sbjct: 69  GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYI 127
Query: 141 L-KEFAPSIPAKNITCL-TRLDHNRALGQISEKL-NVQVSDVKNVIIWGNHSSSQY 193
           + KE     P   +  +  +LD  R    + E+L N    +++   I G H  S +
Sbjct: 128 MWKESGK--PRNEVFGMGNQLDSQR----LKERLYNAGARNIRRAWIIGEHGDSMF 177

>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 83  NIAVMVGGFPRKEGMERKDVMSKNVSIYKA---QASALEQHAAPNCKVLVVANPANTNAL 139
           ++ V+  G PRK GM R+D++  N  I +A   QA+ L    +PN  +++V NP +    
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAMTY 127
Query: 140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHA 199
           +  E +     + I     LD  R    I+ +  V V DV+  ++ G H     P    +
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQ-AMLMGGHGDEMVPLPRFS 186
Query: 200 TVNTAAGEKPVRELVKDD 217
           T++      PV E +  D
Sbjct: 187 TISGI----PVSEFIAPD 200

>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 2/143 (1%)
Query: 49  EALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS 108
           + L G  M+L   +  L    + +        G  + V+  G  ++EG  R +++ +NV+
Sbjct: 57  DKLKGEMMDLQHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVN 116
Query: 109 IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQI 168
           I+K     + +H +P+C +LVV+NP +    +  + +     + I     LD  R    +
Sbjct: 117 IFKFIIPNIVKH-SPDCIILVVSNPVDVLTYVAWKLSGLPMHRIIGSGCNLDSARFRYLM 175
Query: 169 SEKLNVQVSDVKNVIIWGNHSSS 191
            E+L V        +I G H  S
Sbjct: 176 GERLGVHSCSCHGWVI-GEHGDS 197

>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 2/143 (1%)
Query: 49  EALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS 108
           + L G  M+L   +  L    + +        G  + V+  G  ++EG  R +++ +NV+
Sbjct: 56  DKLKGEMMDLQHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVN 115
Query: 109 IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQI 168
           I+K     + +H +P+C +LVV+NP +    +  + +     + I     LD  R    +
Sbjct: 116 IFKFIIPNIVKH-SPDCIILVVSNPVDVLTYVAWKLSGLPMHRIIGSGCNLDSARFRYLM 174
Query: 169 SEKLNVQVSDVKNVIIWGNHSSS 191
            E+L V        +I G H  S
Sbjct: 175 GERLGVHSCSCHGWVI-GEHGDS 196

>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 7   RVLVTGAAGQIGYAL-VPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
           ++ V G  GQ+G A  + ++ + +   TD+  ++ +L+     + L G  M+L   +  L
Sbjct: 23  KITVVGV-GQVGMACAISILGKSL---TDELALVDVLE-----DKLKGEMMDLQHGSLFL 73
Query: 66  LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
               +             I V+  G  ++EG  R +++ +NV+++K     + ++ +PNC
Sbjct: 74  QTPKIVANKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPNC 132
Query: 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIW 185
            ++VV+NP +    +  + +     + I     LD  R    + EKL V  S     I+ 
Sbjct: 133 IIIVVSNPVDILTYVAWKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHGWIL- 191
Query: 186 GNHSSS 191
           G H  S
Sbjct: 192 GEHGDS 197

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 49  EALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS 108
           + L G  M+L   +  L    + +           + V+  G  ++EG  R +++ +NV+
Sbjct: 56  DKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVN 115
Query: 109 IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQI 168
           I+K     + ++ +PNCK+LVV+NP +    +  + +     + I     LD  R    +
Sbjct: 116 IFKFIIPNIVKY-SPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 174
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYP 194
            E+L V        I+ G H  S  P
Sbjct: 175 GERLGVHPLSCHGWIL-GEHGDSSVP 199

>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 84  IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKE 143
           + ++  G     G  R D++ +NV+I KA    + Q++ P+CK++VV NP +    ++ +
Sbjct: 90  LVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNS-PDCKIIVVTNPVDILTYVVWK 148
Query: 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 194
            +     + I     LD  R    I EKL V  +     ++ G H  S  P
Sbjct: 149 ISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVL-GEHGDSSVP 198

>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 83  NIAVMVGGFPRKEGMERKDVMSKNVSIYKA---QASALEQHAAPNCKVLVVANPANTNAL 139
           ++ V+  G PRK GM R+D++  N  I +A   QA+ L    +PN  +++V NP +    
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAMTY 127
Query: 140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHA 199
           +  E +     + I     LD  R    I+ +  V V DV+  ++ G H     P    +
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQ-AMLMGGHGDEMVPLPRFS 186
Query: 200 TVNTAAGEKPVRELVKDD 217
            ++      PV E +  D
Sbjct: 187 CISGI----PVSEFIAPD 200

>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 7/149 (4%)
Query: 77  EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136
           E C   +I  +  G  +K G  R +++ KN+ I+K   S +   +  +   LV  NP + 
Sbjct: 69  EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEV-MASGFDGIFLVATNPVDI 127
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDV 196
                 +F+     + I   T LD  R    +SE       +V   II G H  ++ P  
Sbjct: 128 LTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHII-GEHGDTELPVW 186
Query: 197 NHATVNTAAGEKPVRELV-KDDAWLNGEF 224
           +HA V    G  PV ELV K+DA+   E 
Sbjct: 187 SHANV----GGVPVSELVEKNDAYKQEEL 211

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 49  EALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS 108
           + L G  M+L   +  L    + +           + ++  G  ++EG  R +++ +NV+
Sbjct: 55  DKLKGEMMDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVN 114
Query: 109 IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQI 168
           I+K     + ++ +P+CK+LVV+NP +    +  + +     + I     LD  R    +
Sbjct: 115 IFKFIIPNVVKY-SPHCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 173
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYP 194
            E+L V        I+ G H  S  P
Sbjct: 174 GERLGVHALSCHGWIL-GEHGDSSVP 198

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 49  EALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS 108
           + L G  M+L   +  L    + +           + ++  G  ++EG  R +++ +NV+
Sbjct: 55  DKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVN 114
Query: 109 IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQI 168
           I+K     + ++ +PNCK+L+V+NP +    +  + +     + I     LD  R    +
Sbjct: 115 IFKFIIPNVVKY-SPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 173
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYP 194
            E+L V        ++ G H  S  P
Sbjct: 174 GERLGVHPLSCHGWVL-GEHGDSSVP 198

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 49  EALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS 108
           + L G  M+L   +  L    + +           + ++  G  ++EG  R +++ +NV+
Sbjct: 55  DKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVN 114
Query: 109 IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQI 168
           I+K     + ++ +PNCK+L+V+NP +    +  + +     + I     LD  R    +
Sbjct: 115 IFKFIIPNVVKY-SPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 173
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYP 194
            E+L V        ++ G H  S  P
Sbjct: 174 GERLGVHPLSCHGWVL-GEHGDSSVP 198

>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 7/149 (4%)
Query: 77  EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136
           E C   +I  +  G  +K G  R +++ KN+ I+K   S +   +  +   LV  NP + 
Sbjct: 69  EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEV-MASGFDGIFLVATNPVDI 127
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDV 196
                 +F+     + I   T LD  R    +SE       +V   II G H  ++ P  
Sbjct: 128 LTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHII-GEHGDTELPVW 186
Query: 197 NHATVNTAAGEKPVRELV-KDDAWLNGEF 224
           +HA V    G  PV ELV K+DA+   E 
Sbjct: 187 SHANV----GGVPVSELVEKNDAYKQEEL 211

>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 10/185 (5%)
Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
           ++ V G  GQ+G A    I     LG      L ++D+    + L G  M+L   +  L 
Sbjct: 22  KITVVGV-GQVGMACAISI-----LGKSLADELALVDV--LEDKLKGEMMDLQHGSLFLQ 73
Query: 67  KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
              +             I V+  G  ++EG  R +++ +NV+++K     + ++ +P+C 
Sbjct: 74  TPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCI 132
Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG 186
           ++VV+NP +    +  + +     + I     LD  R    ++EKL +  S     I+ G
Sbjct: 133 IIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWIL-G 191
Query: 187 NHSSS 191
            H  S
Sbjct: 192 EHGDS 196

>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 10/185 (5%)
Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
           ++ V G  GQ+G A    I     LG      L ++D+    + L G  M+L   +  L 
Sbjct: 22  KITVVGV-GQVGMACAISI-----LGKSLADELALVDV--LEDKLKGEMMDLQHGSLFLQ 73
Query: 67  KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
              +             I V+  G  ++EG  R +++ +NV+++K     + ++ +P+C 
Sbjct: 74  TPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCI 132
Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG 186
           ++VV+NP +    +  + +     + I     LD  R    ++EKL +  S     I+ G
Sbjct: 133 IIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWIL-G 191
Query: 187 NHSSS 191
            H  S
Sbjct: 192 EHGDS 196

>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 83  NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142
           ++ V+  G P+K G  R D+++KN+ I K+    +   +  N   LV ANP +       
Sbjct: 78  DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVD-SGFNGIFLVAANPVDILTYATW 136
Query: 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 201
           + +     + +   T LD  R    I+E +NV    V +  I G H  +++P  +HA +
Sbjct: 137 KLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSV-HAYIMGEHGDTEFPVWSHANI 194

>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 83  NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142
           ++ V+  G P++ G  R D+++KN+ I K+    +   +  N   LV ANP +       
Sbjct: 77  DLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVD-SGFNLIFLVAANPVDILTYATW 135
Query: 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 201
           + +     + +   T LD  R    I+E +NV    V +  I G H  +++P  +HA +
Sbjct: 136 KLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSV-HAYIMGEHGDTEFPVWSHANI 193

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 49  EALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS 108
           + L G  M+L   +  L    + ++          + ++  G  ++EG  R +++ +NV+
Sbjct: 56  DKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVN 115
Query: 109 IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQI 168
           I+K     + ++ +P CK+L+V+NP +    +  + +     + I     LD  R    +
Sbjct: 116 IFKFIIPNVVKY-SPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 174
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYP 194
            E+L V        ++ G H  S  P
Sbjct: 175 GERLGVHPLSCHGWVL-GEHGDSSVP 199

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 49  EALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS 108
           + L G  M+L   +  L    + ++          + ++  G  ++EG  R +++ +NV+
Sbjct: 55  DKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVN 114
Query: 109 IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQI 168
           I+K     + ++ +P CK+L+V+NP +    +  + +     + I     LD  R    +
Sbjct: 115 IFKFIIPNVVKY-SPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 173
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYP 194
            E+L V        ++ G H  S  P
Sbjct: 174 GERLGVHPLSCHGWVL-GEHGDSSVP 198

>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 70  VATTDAVEACTGVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEQHAAPN 124
           V  +++ +   G ++ ++  GF +  G       R D++  N  I       + ++  PN
Sbjct: 60  VTGSNSYDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHI-KNLCPN 118
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVI 183
             ++VV NP +    +L E +  +P   I  L   LD +R    IS+KLNV   DV N +
Sbjct: 119 AFIIVVTNPVDVMVQLLFEHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAL 176
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD----DAWLNGEFITTVQ 229
           I G H +       + TV    G  P++E + +    D  + G F  TV 
Sbjct: 177 IVGAHGNKMVLLKRYITV----GGIPLQEFINNKKITDEEVEGIFDRTVN 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	300
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	1e-137
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	1e-136
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	1e-133
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	1e-133
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	6e-89
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	8e-19
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	9e-19
3tl2_A	315	Malate dehydrogenase; center for structural genomi	1e-18
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	2e-18
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	3e-18
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	5e-18
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	6e-18
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	7e-18
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	2e-17
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	3e-17
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	3e-17
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	3e-17
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	5e-17
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	5e-17
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	8e-17
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	1e-15
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	4e-15
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	6e-15
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	1e-14
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	5e-14
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	3e-13
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	3e-13
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	3e-13
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	6e-13
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	9e-13
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	1e-12
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	2e-12
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	3e-12
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	4e-12
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	1e-11
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	2e-09
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	3e-06
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	2e-04
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	2e-04
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	3e-04
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	5e-04

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score =  390 bits (1004), Expect = e-137
 Identities = 139/265 (52%), Positives = 179/265 (67%), Gaps = 6/265 (2%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMEL 58
           MAK P+RV VTGAAGQI Y+L+  IA G MLG DQPVIL +L+IP   A +AL GV ME+
Sbjct: 1   MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEI 60

Query: 59  VDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALE 118
            D AFPLL G+ A  D + A    ++A++VG  PR  GMERKD++  N  I+  Q  A++
Sbjct: 61  DDCAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120

Query: 119 QHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSD 178
             A+ N KVLVV NPANTNA I  + APS+PAKN T + RLDHNRAL QI+ K    VS 
Sbjct: 121 AVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSS 180

Query: 179 VKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKA 238
           ++ + +WGNHS + Y D  +A ++       V++++ DDAW    F+ TV +RGAAII A
Sbjct: 181 IEKLFVWGNHSPTMYADYRYAQID----GASVKDMINDDAWNRDTFLPTVGKRGAAIIDA 236

Query: 239 RKLSSALSAASSACDHIRDWVLGTP 263
           R +SSA SAA++A DHI DWVLGT 
Sbjct: 237 RGVSSAASAANAAIDHIHDWVLGTA 261

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score =  387 bits (995), Expect = e-136
 Identities = 143/262 (54%), Positives = 178/262 (67%), Gaps = 5/262 (1%)

Query: 3   KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
           K PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L+IP A +AL GV MEL D A
Sbjct: 2   KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61

Query: 63  FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
           FPLL G+ AT D   A    + A++VG  PRK GMER+D++  N  I+  Q  AL + A 
Sbjct: 62  FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121

Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
            + KVLVV NPANTNALI  + AP +  +N T +TRLDHNRA  Q+++K    V  ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181

Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS 242
            +WGNHSS+ +PD+ HA V+     +P  ELV D  W    FI TV QRGAAII+AR  S
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236

Query: 243 SALSAASSACDHIRDWVLGTPE 264
           SA SAA++A +HIRDW LGTPE
Sbjct: 237 SAASAANAAIEHIRDWALGTPE 258

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score =  379 bits (976), Expect = e-133
 Identities = 160/261 (61%), Positives = 194/261 (74%)

Query: 4   EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
           EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A 
Sbjct: 2   EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 61

Query: 64  PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
           PLLK V+AT     A   +++A++VG  PR++GMERKD++  NV I+K Q +AL+++A  
Sbjct: 62  PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 121

Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
           + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVI
Sbjct: 122 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVI 181

Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS 243
           IWGNHSS+QYPDVNHA V   A E  V E VKDD+WL GEFITTVQQRGAA+IKARKLSS
Sbjct: 182 IWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 241

Query: 244 ALSAASSACDHIRDWVLGTPE 264
           A+SAA + CDH+RD   GTPE
Sbjct: 242 AMSAAKAICDHVRDIWFGTPE 262

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375

 Score =  381 bits (979), Expect = e-133
 Identities = 118/264 (44%), Positives = 155/264 (58%), Gaps = 4/264 (1%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
             K+ V + V+GAAG I   L+  +A G + G DQP+ L +L    + +AL GV MEL D
Sbjct: 28  SWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELED 87

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           + +PLL+ V    D  E    V+ A+++G  PR  GMER  ++  N  I+  Q  AL   
Sbjct: 88  SLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAV 147

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
           A+ N KVLVV NP NTNALI  + AP IPAKN   LTRLD NRA  Q++ K  V    V 
Sbjct: 148 ASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 207

Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
           NV IWGNHS++Q PD  +A ++     +PV+E++K   WL  EF  TVQ+RG A+I+   
Sbjct: 208 NVTIWGNHSTTQVPDFLNAKID----GRPVKEVIKRTKWLEEEFTITVQKRGGALIQKWG 263

Query: 241 LSSALSAASSACDHIRDWVLGTPE 264
            SSA S A S  D I+  V  TPE
Sbjct: 264 RSSAASTAVSIADAIKSLVTPTPE 287

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score =  267 bits (686), Expect = 6e-89
 Identities = 71/264 (26%), Positives = 111/264 (42%), Gaps = 16/264 (6%)

Query: 5   PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP 64
             ++ + GAAG IG  +    A    L  +  + L      P A  L GV  E+    F 
Sbjct: 8   EEKLTIVGAAGMIGSNMAQTAAMM-RLTPN--LCL----YDPFAVGLEGVAEEIRHCGFE 60

Query: 65  LLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
            L  +  T+D  EA T     V  GG PRKEGM R+D++  N  I       ++ +    
Sbjct: 61  GL-NLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDC 119

Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVII 184
             V+++ NPA+   L+   ++  +    +T L  LD  R   ++++   ++ S V N   
Sbjct: 120 KHVIIIFNPADITGLVTLIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRT 178

Query: 185 WGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLN---GEFITTVQQRGAAIIKARKL 241
           +G H        + A VN      P+ +L+  D   N    E    V + GA IIK R  
Sbjct: 179 YGGHGEQMAVFASTAKVNG----TPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGR 234

Query: 242 SSALSAASSACDHIRDWVLGTPEV 265
           SS  S +  + + IR  + G    
Sbjct: 235 SSFQSPSYVSIEMIRAAMGGEAFR 258

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score = 83.8 bits (208), Expect = 8e-19
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 14/188 (7%)

Query: 6   VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
           ++V V GAAG IG AL  ++   +  G++    L + DI P      GV ++L      +
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTP---GVAVDLSHIPTAV 53

Query: 66  LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
                +  DA  A  G ++ ++  G  RK GM+R D+ + N  I K     + +   P  
Sbjct: 54  KIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKA 112

Query: 126 KVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181
            + ++ NP NT     A +LK+ A       +  +T LD  R+   ++E    Q  +V  
Sbjct: 113 CIGIITNPVNTTVAIAAEVLKK-AGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEV-E 170

Query: 182 VIIWGNHS 189
           V + G HS
Sbjct: 171 VPVIGGHS 178

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score = 83.8 bits (208), Expect = 9e-19
 Identities = 60/259 (23%), Positives = 105/259 (40%), Gaps = 39/259 (15%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMELVDAAFP 64
           +V V GA+G IG  L  ++          P++  L + DI        GV  +L      
Sbjct: 2   KVAVLGASGGIGQPLSLLLKN-------SPLVSRLTLYDIAHT----PGVAADLSHIETR 50

Query: 65  L-LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
             +KG +      +   G ++ V+  G PRK GM R D+ + N +I     +A  QH  P
Sbjct: 51  ATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CP 109

Query: 124 NCKVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDV 179
           +  + +++NP N+     A + K+         I  +T LD  RA   ++E   +  + V
Sbjct: 110 DAMICIISNPVNSTIPITAEVFKKHG-VYNPNKIFGVTTLDIVRANAFVAELKGLDPARV 168

Query: 180 KNVIIWGNHSS-SQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKA 238
            +V + G H+  +  P ++  T      +  +  L              +Q+ G  ++KA
Sbjct: 169 -SVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTG-----------RIQEAGTEVVKA 216

Query: 239 RK------LSSALSAASSA 251
           +       LS A + A   
Sbjct: 217 KAGAGSATLSMAYAGARFV 235

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score = 83.7 bits (208), Expect = 1e-18
 Identities = 50/257 (19%), Positives = 96/257 (37%), Gaps = 40/257 (15%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           M  +  +V V GA G  G     ++A          V++   DIP       G  +++++
Sbjct: 4   MTIKRKKVSVIGA-GFTGATTAFLLA---QKELADVVLV---DIPQLENPTKGKALDMLE 56

Query: 61  AA-FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQ 119
           A+        +  T         ++ V+  G  RK GM R D+++ N  I K+    + +
Sbjct: 57  ASPVQGFDANIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAK 116

Query: 120 HAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ 167
           H +PN  ++V+ NP +     + +                   R +GQ            
Sbjct: 117 H-SPNAIIVVLTNPVDAMTYSVFKE------------AGFPKERVIGQSGVLDTARFRTF 163

Query: 168 ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITT 227
           I+++LN+ V D+   ++ G H     P V ++         P+  L+  +       +  
Sbjct: 164 IAQELNLSVKDITGFVL-GGHGDDMVPLVRYSYAGG----IPLETLIPKERLE--AIVER 216

Query: 228 VQQRGAAIIKARKLSSA 244
            ++ G  I+      SA
Sbjct: 217 TRKGGGEIVGLLGNGSA 233

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score = 82.6 bits (205), Expect = 2e-18
 Identities = 54/259 (20%), Positives = 104/259 (40%), Gaps = 41/259 (15%)

Query: 6   VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FP 64
           ++V V GA G +G  +   +A        + V++  +DI        G  +++ +++   
Sbjct: 1   MKVTVIGA-GNVGATVAECVA---RQDVAKEVVM--VDIKD--GMPQGKALDMRESSPIH 52

Query: 65  LLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
                V  T+        ++ ++  G PR  GM R D+++KN  I         +  +P+
Sbjct: 53  GFDTRVTGTNDYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPD 111

Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKL 172
             ++VVANP +    +  E             +    NR +G             I+E+L
Sbjct: 112 STIIVVANPLDVMTYVAYEA------------SGFPTNRVMGMAGVLDTGRFRSFIAEEL 159

Query: 173 NVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRG 232
           +V V DV+ +++ G H  +  P   + TV       PV +L+ D      E +   +  G
Sbjct: 160 DVSVRDVQALLM-GGHGDTMVPLPRYTTVGG----IPVPQLIDDARI--EEIVERTKGAG 212

Query: 233 AAIIKARKLSSALSAASSA 251
             I+     S+  +  ++A
Sbjct: 213 GEIVDLMGTSAWYAPGAAA 231

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score = 82.2 bits (204), Expect = 3e-18
 Identities = 38/203 (18%), Positives = 77/203 (37%), Gaps = 36/203 (17%)

Query: 69  VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128
           +    +  E     ++ ++  G PRK  M R D+++ N  I  + A  + ++  PN  V+
Sbjct: 71  IFGENNY-EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKY-CPNAFVI 128

Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQV 176
            + NP +      KE             + +  N+  G             +S  L V+ 
Sbjct: 129 CITNPLDAMVYYFKEK------------SGIPANKVCGMSGVLDSARFRCNLSRALGVKP 176

Query: 177 SDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQR----G 232
           SDV  +++ G H     P  +  T+        + + V+    +    I  + ++    G
Sbjct: 177 SDVSAIVV-GGHGDEMIPLTSSVTIGG----ILLSDFVEQG-KITHSQINEIIKKTAFGG 230

Query: 233 AAIIKARKLSSALSAASSACDHI 255
             I++  K  SA  A +++   +
Sbjct: 231 GEIVELLKTGSAFYAPAASAVAM 253

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score = 81.8 bits (203), Expect = 5e-18
 Identities = 50/262 (19%), Positives = 102/262 (38%), Gaps = 42/262 (16%)

Query: 6   VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--- 62
           ++V + GA+G++G A   ++A        + ++L  +    +   L G++ ++ DA    
Sbjct: 1   MKVTIIGASGRVGSATALLLA---KEPFMKDLVL--IGREHSINKLEGLREDIYDALAGT 55

Query: 63  -FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA 121
                   V + + +      ++ ++  G PRKEGM R D+   N  I    A  + +  
Sbjct: 56  RSDA-NIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI- 113

Query: 122 APNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------IS 169
               K+ V+ NP +                     ++ + N+  G             I+
Sbjct: 114 CDT-KIFVITNPVDVMTYKALVD------------SKFERNQVFGLGTHLDSLRFKVAIA 160

Query: 170 EKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQ 229
           +   V + +V+  II G H  S  P ++  ++       P+++  +       E I  V+
Sbjct: 161 KFFGVHIDEVRTRII-GEHGDSMVPLLSATSIGG----IPIQKFERFKELPIDEIIEDVK 215

Query: 230 QRGAAIIKARKLSSALSAASSA 251
            +G  II+  K  S    A++ 
Sbjct: 216 TKGEQIIR-LKGGSEFGPAAAI 236

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score = 81.4 bits (202), Expect = 6e-18
 Identities = 40/200 (20%), Positives = 80/200 (40%), Gaps = 35/200 (17%)

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
                +   V  T+  +     ++ ++  G PRK GM R D++  N+ + +     ++ +
Sbjct: 53  CPIEGVDFKVRGTNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHN 112

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
             PN  V+ + NP +    +L++F            + +  N+ +G             +
Sbjct: 113 -CPNAFVICITNPLDIMVNMLQKF------------SGVPDNKIVGMAGVLDSARFRTFL 159

Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTV 228
           +++LNV V  V+  ++ G H  +  P    + V        + +LVK+   L  E +  +
Sbjct: 160 ADELNVSVQQVQAYVM-GGHGDTMVPLTKMSNVAG----VSLEQLVKEG-KLKQERLDAI 213

Query: 229 QQR----GAAIIKARKLSSA 244
             R    G  I+   K  SA
Sbjct: 214 VSRTRSGGGEIVALLKTGSA 233

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score = 81.0 bits (201), Expect = 7e-18
 Identities = 54/259 (20%), Positives = 105/259 (40%), Gaps = 41/259 (15%)

Query: 6   VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FP 64
           +++ V GA G +G      +A        + ++L  LD+        G  +++ ++    
Sbjct: 1   MKITVIGA-GNVGATTAFRLA---EKQLARELVL--LDV--VEGIPQGKALDMYESGPVG 52

Query: 65  LLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
           L    V  ++        +I ++  G PRK GM R+D++ KN  I K     + +H + N
Sbjct: 53  LFDTKVTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKN 111

Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKL 172
             ++VV+NP +    +                + L   R +G             I+ +L
Sbjct: 112 PIIIVVSNPLDIMTHVAWVR------------SGLPKERVIGMAGVLDAARFRSFIAMEL 159

Query: 173 NVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRG 232
            V + D+   ++ G H  +  P V + TV       P+ +L+  +     + +   +  G
Sbjct: 160 GVSMQDINACVL-GGHGDAMVPVVKYTTVAG----IPISDLLPAETI--DKLVERTRNGG 212

Query: 233 AAIIKARKLSSALSAASSA 251
           A I++  K  SA  A +S+
Sbjct: 213 AEIVEHLKQGSAFYAPASS 231

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score = 79.8 bits (198), Expect = 2e-17
 Identities = 45/208 (21%), Positives = 76/208 (36%), Gaps = 32/208 (15%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
           +V V GAAG +G A    IA   +      V+   +DIP   +   G   +         
Sbjct: 2   KVSVVGAAGTVGAAAGYNIA---LRDIADEVVF--VDIPDKEDDTVGQAADTNHGI-AYD 55

Query: 67  KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
                     E   G ++ V+  G PR+ G  R D+   N  I +   S+L++H   +  
Sbjct: 56  SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYI 114

Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNV 174
            L  +NP +     L E                   + +G             +SE+ + 
Sbjct: 115 SLTTSNPVDLLNRHLYEA------------GDRSREQVIGFGGRLDSARFRYVLSEEFDA 162

Query: 175 QVSDVKNVIIWGNHSSSQYPDVNHATVN 202
            V +V+  I+ G H  +Q P  +  +V+
Sbjct: 163 PVQNVEGTIL-GEHGDAQVPVFSKVSVD 189

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score = 79.9 bits (198), Expect = 3e-17
 Identities = 46/200 (23%), Positives = 84/200 (42%), Gaps = 35/200 (17%)

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           +            +   A  G ++ ++  G PRK GM R D++  N+ + +   + ++++
Sbjct: 55  SPVDGFDAKFTGANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY 114

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
            AP   V+ + NP +     L++F            + L  ++ +G             +
Sbjct: 115 -APEAFVICITNPLDAMVWALQKF------------SGLPAHKVVGMAGVLDSARFRYFL 161

Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTV 228
           SE+ NV V DV   ++ G H  S  P   ++TV       P+ +LVK   W + + +  +
Sbjct: 162 SEEFNVSVEDVTVFVL-GGHGDSMVPLARYSTVAG----IPLPDLVKMG-WTSQDKLDKI 215

Query: 229 QQR----GAAIIKARKLSSA 244
            QR    GA I+   K  SA
Sbjct: 216 IQRTRDGGAEIVGLLKTGSA 235

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score = 79.6 bits (197), Expect = 3e-17
 Identities = 60/253 (23%), Positives = 108/253 (42%), Gaps = 31/253 (12%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMELVDAAFP 64
           +V + GAAG IG  L  ++          P++  LH+ D+  A     GV  ++      
Sbjct: 10  KVAILGAAGGIGQPLAMLMKM-------NPLVSVLHLYDVVNA----PGVTADISHMDTG 58

Query: 65  L-LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
             ++G +       A TG+++ ++  G PRK GM R D+   N  I K     + +   P
Sbjct: 59  AVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKC-CP 117

Query: 124 NCKVLVVANPANTNALILKEF---APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
              V +++NP N+   I  E    A +   K +  +T LD  RA   ++E L +   DV 
Sbjct: 118 RAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVD 177

Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKAR- 239
             ++ G+   +  P ++     ++  ++ +  L              +Q  G  +++A+ 
Sbjct: 178 VPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDR-----------IQNGGTEVVEAKA 226

Query: 240 KLSSA-LSAASSA 251
              SA LS A +A
Sbjct: 227 GAGSATLSMAYAA 239

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score = 79.5 bits (197), Expect = 3e-17
 Identities = 38/195 (19%), Positives = 72/195 (36%), Gaps = 33/195 (16%)

Query: 69  VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128
           +  +    E   G +I ++  G  RK GM R+ ++  N +     A  ++ + A +  V+
Sbjct: 56  ISGSNSY-EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAY-AKDAIVV 113

Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQV 176
           +  NP +    ++ +             T     R +G             IS+KL V  
Sbjct: 114 ITTNPVDAMTYVMYKK------------TGFPRERVIGFSGILDSARMAYYISQKLGVSF 161

Query: 177 SDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAII 236
             V  +++ G H    +P    ++V       P+  L+  +     E ++     GA I 
Sbjct: 162 KSVNAIVL-GMHGQKMFPVPRLSSVGG----VPLEHLMSKEEI--EEVVSETVNAGAKIT 214

Query: 237 KARKLSSALSAASSA 251
           + R  SS    A+  
Sbjct: 215 ELRGYSSNYGPAAGL 229

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score = 78.7 bits (195), Expect = 5e-17
 Identities = 43/207 (20%), Positives = 78/207 (37%), Gaps = 32/207 (15%)

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           +        V  T+        ++ V+  G PRK GM R+D++  N  I +A  S     
Sbjct: 50  SPIEGFDVRVTGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL 109

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
            +PN  +++V NP +    +  E             +     R +GQ            I
Sbjct: 110 -SPNAVIIMVNNPLDAMTYLAAEV------------SGFPKERVIGQAGVLDAARYRTFI 156

Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTV 228
           + +  V V DV+ +++ G H     P    + ++      PV E +  D     + +   
Sbjct: 157 AMEAGVSVEDVQAMLM-GGHGDEMVPLPRFSCISG----IPVSEFIAPDRL--AQIVERT 209

Query: 229 QQRGAAIIKARKLSSALSAASSACDHI 255
           ++ G  I+   K  SA  A ++A   +
Sbjct: 210 RKGGGEIVNLLKTGSAYYAPAAATAQM 236

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score = 78.8 bits (195), Expect = 5e-17
 Identities = 39/208 (18%), Positives = 79/208 (37%), Gaps = 40/208 (19%)

Query: 69  VVATTDAVEACTGVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEQHAAP 123
           V A      A TG +  ++  G  +  G       R D++  N  I +     ++++  P
Sbjct: 66  VRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CP 124

Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEK 171
              ++VV NP +    ++ E             + +  N   G             +++ 
Sbjct: 125 KTFIIVVTNPLDCMVKVMCEA------------SGVPTNMICGMACMLDSGRFRRYVADA 172

Query: 172 LNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQR 231
           L+V   DV+  +I G H     P V + TVN      P+++ +KD   +  + +  + + 
Sbjct: 173 LSVSPRDVQATVI-GTHGDCMVPLVRYITVNG----YPIQKFIKDG-VVTEKQLEEIAEH 226

Query: 232 ----GAAIIKARKLSSALSAASSACDHI 255
               G  I++     SA  A +++   +
Sbjct: 227 TKVSGGEIVRFLGQGSAYYAPAASAVAM 254

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score = 78.3 bits (194), Expect = 8e-17
 Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 35/191 (18%)

Query: 70  VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLV 129
           V  TD     +G ++ ++    P +   +R +++  N  I  + A  ++++  PN  V+ 
Sbjct: 61  VIGTDDYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKY-CPNAFVIC 119

Query: 130 VANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQVS 177
           + NP +      ++             + L HN+  G             I++   V  S
Sbjct: 120 ITNPLDVMVSHFQKV------------SGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNAS 167

Query: 178 DVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQR----GA 233
           DV   +I G H     P  +  +V       P+   +K    +  E I  +         
Sbjct: 168 DVSANVI-GGHGDGMVPATSSVSVGG----VPLSSFIKQG-LITQEQIDEIVCHTRIAWK 221

Query: 234 AIIKARKLSSA 244
            +    K  +A
Sbjct: 222 EVADNLKTGTA 232

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score = 74.9 bits (185), Expect = 1e-15
 Identities = 52/253 (20%), Positives = 96/253 (37%), Gaps = 43/253 (16%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
             K+  +V++ G  G +G +    +    + G  Q + +  +DI    +   G  ++L +
Sbjct: 5   TDKDHQKVILVGD-GAVGSSYAYAMV---LQGIAQEIGI--VDI--FKDKTKGDAIDLSN 56

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           A  P        +         ++ V+  G P+K G  R D+++KN+ I K+    +   
Sbjct: 57  AL-PFTSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS 115

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
              N   LV ANP +       +            L+    NR +G             I
Sbjct: 116 -GFNGIFLVAANPVDILTYATWK------------LSGFPKNRVVGSGTSLDTARFRQSI 162

Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTV 228
           +E +NV    V   I+ G H  +++P  +HA +    G   + E VK    +  + +  +
Sbjct: 163 AEMVNVDARSVHAYIM-GEHGDTEFPVWSHANI---GG-VTIAEWVKAHPEIKEDKLVKM 217

Query: 229 QQR----GAAIIK 237
            +        IIK
Sbjct: 218 FEDVRDAAYEIIK 230

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score = 73.7 bits (182), Expect = 4e-15
 Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 39/184 (21%)

Query: 77  EACTGVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131
           +   G ++ ++  GF +  G       R D++  N  I       ++++  PN  ++VV 
Sbjct: 68  DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVT 126

Query: 132 NPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQVSDV 179
           NP +    +L +             + +  N+ +G             IS+KLNV   DV
Sbjct: 127 NPVDVMVQLLHQH------------SGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV 174

Query: 180 KNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQR---GAAII 236
              I+ G H +       + TV       P++E + +   ++   +  +  R    A  I
Sbjct: 175 NAHIV-GAHGNKMVLLKRYITVGG----IPLQEFINNK-LISDAELEAIFDRTVNTALEI 228

Query: 237 KARK 240
               
Sbjct: 229 VNLH 232

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score = 72.9 bits (180), Expect = 6e-15
 Identities = 53/253 (20%), Positives = 90/253 (35%), Gaps = 42/253 (16%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           M K   +V + GA G +G +    +      G    +++  +D+    E   G  M+L  
Sbjct: 1   MNKHVNKVALIGA-GFVGSSYAFALI---NQGITDELVV--IDV--NKEKAMGDVMDLNH 52

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
                 + V  +    E C   +I  +  G  +K G  R +++ KN+ I+K   S +   
Sbjct: 53  GKAFAPQPVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMAS 112

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
              +   LV  NP +       +             + L   R +G             +
Sbjct: 113 -GFDGIFLVATNPVDILTYATWK------------FSGLPKERVIGSGTTLDSARFRFML 159

Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTV 228
           SE       +V   II G H  ++ P  +HA V    G  PV ELV+ +     E +  +
Sbjct: 160 SEYFGAAPQNVCAHII-GEHGDTELPVWSHANV---GG-VPVSELVEKNDAYKQEELDQI 214

Query: 229 QQR----GAAIIK 237
                     II+
Sbjct: 215 VDDVKNAAYHIIE 227

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score = 71.8 bits (177), Expect = 1e-14
 Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 43/248 (17%)

Query: 6   VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
           +++ + G  G++G +    +    M G  + ++L  +D+    +   G  ++L+    P 
Sbjct: 1   MKIGIVGL-GRVGSSTAFALL---MKGFAREMVL--IDV--DKKRAEGDALDLIHGT-PF 51

Query: 66  LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
            +             G ++ ++  G P+K G  R  ++ +N  + K  A  + ++ AP+ 
Sbjct: 52  TRRANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDS 110

Query: 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLN 173
            V+VV NP +       +             + +D  +  G             I++   
Sbjct: 111 IVIVVTNPVDVLTYFFLKE------------SGMDPRKVFGSGTVLDTARLRTLIAQHCG 158

Query: 174 VQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQR-- 231
                V   +I G H  S+ P  + A +    G  P++ + +     + + +    ++  
Sbjct: 159 FSPRSVHVYVI-GEHGDSEVPVWSGAMI---GG-IPLQNMCQVCQKCDSKILENFAEKTK 213

Query: 232 --GAAIIK 237
                II+
Sbjct: 214 RAAYEIIE 221

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score = 70.2 bits (173), Expect = 5e-14
 Identities = 48/253 (18%), Positives = 88/253 (34%), Gaps = 42/253 (16%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
                 RV+V GA G +G + V  +      G    ++L  +D         G  M+   
Sbjct: 2   KNNGGARVVVIGA-GFVGASYVFALM---NQGIADEIVL--IDA--NESKAIGDAMDFNH 53

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
                 K V       + C   ++ V+  G  +K G  R D++ KN++I+++   ++   
Sbjct: 54  GKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS 113

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
                  LV  NP +       +             + L H R +G             +
Sbjct: 114 -GFQGLFLVATNPVDILTYATWK------------FSGLPHERVIGSGTILDTARFRFLL 160

Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTV 228
            E  +V   +V   II G H  ++ P  + A +       P+R+LV+       + +  +
Sbjct: 161 GEYFSVAPQNVHAYII-GEHGDTELPVWSQAYI---GV-MPIRKLVESKGEEAQKDLERI 215

Query: 229 QQR----GAAIIK 237
                     II+
Sbjct: 216 FVNVRDAAYQIIE 228

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score = 68.3 bits (168), Expect = 3e-13
 Identities = 59/254 (23%), Positives = 99/254 (38%), Gaps = 44/254 (17%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           M K   +V + GA G +G +    +A   +  T   ++L  +D+    E   G  M++  
Sbjct: 3   MVKSRSKVAIIGA-GFVGASAAFTMA---LRQTANELVL--IDV--FKEKAIGEAMDINH 54

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
              P +  +             ++ V+  G  RK G  R D+  KNV I K     + ++
Sbjct: 55  GL-PFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY 113

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
              +  +LVV+NP +    ++++             + L   + +G             +
Sbjct: 114 -YNHGVILVVSNPVDIITYMIQK------------WSGLPVGKVIGSGTVLDSIRFRYLL 160

Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNG-----E 223
           SEKL V V +V   II G H  SQ P  +   +   AG K + E + D           +
Sbjct: 161 SEKLGVDVKNVHGYII-GEHGDSQLPLWSCTHI---AG-KNINEYIDDPKCNFTEEDKKK 215

Query: 224 FITTVQQRGAAIIK 237
               V+  GA IIK
Sbjct: 216 IAEDVKTAGATIIK 229

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score = 67.9 bits (167), Expect = 3e-13
 Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 37/187 (19%)

Query: 69  VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128
           +  + D  E C   ++ V+  G  +K G  R +++   V+I KA    L +  APN   +
Sbjct: 64  IDGSDD-PEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYM 121

Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQV 176
           ++ NP +    + ++            LT L  N+  G             I+++  V V
Sbjct: 122 LITNPVDIATHVAQK------------LTGLPENQIFGSGTNLDSARLRFLIAQQTGVNV 169

Query: 177 SDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD--DAWLNGEFITTVQQR--- 231
            +V   I  G H  S+ P    AT+    G  P+ +         L+ +    + Q    
Sbjct: 170 KNVHAYIA-GEHGDSEVPLWESATI---GG-VPMSDWTPLPGHDPLDADKREEIHQEVKN 224

Query: 232 -GAAIIK 237
               II 
Sbjct: 225 AAYKIIN 231

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score = 67.9 bits (167), Expect = 3e-13
 Identities = 37/217 (17%), Positives = 70/217 (32%), Gaps = 44/217 (20%)

Query: 41  MLDIPPA---AEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGM 97
           ++D+      A A      +++ A  P    V     +     G    V+  G  ++ G 
Sbjct: 30  LVDLDRKLAQAHA-----EDILHAT-PFAHPVWVWAGSYGDLEGARAVVLAAGVAQRPGE 83

Query: 98  ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT 157
            R  ++ +N  ++      + +  AP   +LV  NP +    +               L+
Sbjct: 84  TRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPVDVMTQVAYA------------LS 130

Query: 158 RLDHNRALGQ------------ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAA 205
            L   R +G             ++E L V    V   ++ G H  S+    + A V    
Sbjct: 131 GLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSEVLVWSSAQV---G 186

Query: 206 GEKPVRELVKDDAWLNG-----EFITTVQQRGAAIIK 237
           G  P+ E  +                 V++    II+
Sbjct: 187 G-VPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE 222

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score = 66.8 bits (164), Expect = 6e-13
 Identities = 38/213 (17%), Positives = 79/213 (37%), Gaps = 38/213 (17%)

Query: 41  MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERK 100
           ++D+    +   G  ++L DA           +     C   ++ V+  G P+K G  R 
Sbjct: 35  IVDV--VKDRTKGDALDLEDAQ-AFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRL 91

Query: 101 DVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160
           D+++KN++I  +    +      +   LV ANP +       +             +   
Sbjct: 92  DLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPVDILTYATWK------------FSGFP 138

Query: 161 HNRALGQ------------ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEK 208
             R +G             + ++ NV    V   I+ G H  S++   + AT+      +
Sbjct: 139 KERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIM-GEHGDSEFAAYSTATI---GT-R 193

Query: 209 PVRELVKDDAWLNGEFITTVQQR----GAAIIK 237
           PVR++ K+   ++ + +  ++         II 
Sbjct: 194 PVRDVAKEQ-GVSDDDLAKLEDGVRNKAYDIIN 225

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score = 66.4 bits (163), Expect = 9e-13
 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 33/176 (18%)

Query: 77  EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136
             C   ++ V+  G  +K G  R D++SKN+ I+K+    +      +   LV  NP + 
Sbjct: 70  SDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNPVDI 128

Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQVSDVKNVII 184
            A    +             + L   R +G             +SE  +V    V   II
Sbjct: 129 LAYATWK------------FSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII 176

Query: 185 WGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEF---ITTVQQRGAAIIK 237
            G H  ++ P  +HA +   AG +P++ L++       +        +     II+
Sbjct: 177 -GEHGDTELPVWSHANI---AG-QPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQ 227

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score = 66.4 bits (163), Expect = 1e-12
 Identities = 34/186 (18%), Positives = 70/186 (37%), Gaps = 36/186 (19%)

Query: 69  VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128
           +V++ D         + ++  G  ++EG  R +++ +NV+I+K     + ++ +P CK+L
Sbjct: 76  IVSSKD-YSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLL 133

Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQV 176
           +V+NP +    +  +            ++    NR +G             + E+L V  
Sbjct: 134 IVSNPVDILTYVAWK------------ISGFPKNRVIGSGCNLDSARFRYLMGERLGVHP 181

Query: 177 SDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNG-----EFITTVQQR 231
                 ++ G H  S  P  +   V   AG   ++ L              +    V   
Sbjct: 182 LSCHGWVL-GEHGDSSVPVWSGVNV---AG-VSLKSLNPQLGTDADKEQWKDVHKQVVDS 236

Query: 232 GAAIIK 237
              +IK
Sbjct: 237 AYEVIK 242

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score = 65.6 bits (161), Expect = 2e-12
 Identities = 42/205 (20%), Positives = 80/205 (39%), Gaps = 22/205 (10%)

Query: 41  MLDI---PPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGM 97
           ++D       AEA      ++  AA P+  G               + ++  G  +K G 
Sbjct: 30  LVDRDEDRAQAEA-----EDIAHAA-PVSHGTRVWHGGHSELADAQVVILTAGANQKPGE 83

Query: 98  ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT 157
            R D++ KN  I++     + +  AP+  +LV +NP +    +  + AP      I   T
Sbjct: 84  SRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVDLLTDLATQLAP--GQPVIGSGT 140

Query: 158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD- 216
            LD  R    +++   V  +     ++ G H  S+    + A V   AG  PV + ++  
Sbjct: 141 VLDSARFRHLMAQHAGVDGTHAHGYVL-GEHGDSEVLAWSSAMV---AG-MPVADFMQAQ 195

Query: 217 ----DAWLNGEFITTVQQRGAAIIK 237
               +  +  +     +   A+II+
Sbjct: 196 NLPWNEQVRAKIDEGTRNAAASIIE 220

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 27/145 (18%)

Query: 69  VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128
           +V+  D      G  + V+  G  ++EG  R +++ +NV+I+K     + +H +P+C   
Sbjct: 78  IVSGKD-YSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKE 135

Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQV 176
           +             +            L+ L  +R +G             + E+L V  
Sbjct: 136 LHPELGTDKNKQDWK------------LSGLPMHRIIGSGCNLDSARFRYLMGERLGVHS 183

Query: 177 SDVKNVIIWGNHSSSQYPDVNHATV 201
             V   +I G H  S     +    
Sbjct: 184 CLVIGWVI-GQHGDSVPSVWSGMWD 207

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score = 64.5 bits (158), Expect = 4e-12
 Identities = 28/191 (14%), Positives = 57/191 (29%), Gaps = 37/191 (19%)

Query: 41  MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERK 100
           +LD+    +         +D     L  V  + D + A     + +              
Sbjct: 44  LLDLSEGTKG------ATMDLEIFNLPNVEISKD-LSASAHSKVVIFTVN-SLGSSQSYL 95

Query: 101 DVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160
           DV+  NV +++A   AL  + + +  +LV + P      +  +            L+   
Sbjct: 96  DVVQSNVDMFRALVPALGHY-SQHSVLLVASQPVEIMTYVTWK------------LSTFP 142

Query: 161 HNRALGQ------------ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEK 208
            NR +G             I+  L  Q S  +  +I G     +    +           
Sbjct: 143 ANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVI-GEQGEDKVLTWSGQEE---VVSH 198

Query: 209 PVRELVKDDAW 219
             +  + + A 
Sbjct: 199 TSQVQLSNRAM 209

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score = 63.3 bits (155), Expect = 1e-11
 Identities = 53/247 (21%), Positives = 84/247 (34%), Gaps = 55/247 (22%)

Query: 6   VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
           +++   GA G++G           +      + L  +DI  A +   G  M+L  AA   
Sbjct: 1   MKLGFVGA-GRVGSTSAFTCL---LNLDVDEIAL--VDI--AEDLAVGEAMDLAHAA-AG 51

Query: 66  LKG---VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
           +     +V   D      G  I V+  G  RK GM R D+  KN  I K  A  + ++ A
Sbjct: 52  IDKYPKIVGGAD-YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-A 109

Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISE 170
           P  K+LVV NP +    I+ +             +    N   G             +  
Sbjct: 110 PESKILVVTNPMDVMTYIMWKE------------SGKPRNEVFGMGNQLDSQRLKERLYN 157

Query: 171 KLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQ 230
                  +++   I G H  S +   + A      GE     +  D           V+ 
Sbjct: 158 AGAR---NIRRAWIIGEHGDSMFVAKSLADF---DGEVDWEAVEND-----------VRF 200

Query: 231 RGAAIIK 237
             A +IK
Sbjct: 201 VAAEVIK 207

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 27/216 (12%), Positives = 69/216 (31%), Gaps = 42/216 (19%)

Query: 41  MLDIPPA---AEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPR---- 93
            +D   A   A+      ++  DA   L        +   A    ++ +   G  +    
Sbjct: 31  FIDANEAKVKADQ-----IDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIKLQQD 85

Query: 94  KEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI 153
               +R   +    S+ ++  + L++    +  ++V++NP +    + +           
Sbjct: 86  NPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQH---------- 134

Query: 154 TCLTRLDHNRALGQ------------ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 201
             +T    ++ +G             + E  ++    V    + G H +SQ+   +   V
Sbjct: 135 --VTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNL-GEHGNSQFVAWSTVRV 191

Query: 202 NTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 237
               G +P+  L               ++ G  ++ 
Sbjct: 192 ---MG-QPIVTLADAGDIDLAAIEEEARKGGFTVLN 223

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450

 Score = 47.4 bits (112), Expect = 3e-06
 Identities = 33/229 (14%), Positives = 81/229 (35%), Gaps = 37/229 (16%)

Query: 1   MAKEPVRVLVTGAAGQIGYA--LVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL 58
           M+ + +++   G  G  G+A  L+  ++    +     V L+  D+    EA    ++ +
Sbjct: 1   MSLDQIKIAYIGG-GSQGWARSLMSDLSIDERMSGT--VALY--DL--DFEAAQKNEV-I 52

Query: 59  VDAAFPLLKGVVATTDAVEACTGVN---IAVMVGGF---------PRKEGMERKDVMS-- 104
            + +        A +   +A +  +   I+++ G           P + G+ +    +  
Sbjct: 53  GNHSGNGRWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVG 112

Query: 105 --------KNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156
                   + V I+   A A+  +A P   V+   NP +    +L +  P I A      
Sbjct: 113 PGGIIRGLRAVPIFAEIARAIRDYA-PESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHE 171

Query: 157 TRLDHN---RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 202
                      + +       +  D++  ++  NH +      ++  ++
Sbjct: 172 VFGTQKLLAEMVTERLGIEVPRREDIRVNVLGINHFTW-ITKASYRHID 219

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 41/258 (15%), Positives = 78/258 (30%), Gaps = 43/258 (16%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMEL 58
           M K+   +++ G     G    P I   ++   ++  I  L + D     +       ++
Sbjct: 24  MKKKSFSIVIAGG----GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDV 79

Query: 59  VDAAFPLLKGVVATTDAVEACTGVN---IAVMVGGF---------PRKEGMERKDVMS-- 104
                       ATTD  EA T V+     + VG +         P K G+  ++     
Sbjct: 80  FIREKAPDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPG 139

Query: 105 ------KNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPA-------- 150
                 +++         +E+++ P+  +L  +NPA   A   +   P+           
Sbjct: 140 GIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAAIVAEATRRLRPNSKILNICDMPV 198

Query: 151 ---KNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGE 207
                +  +  L   + +      LN          I     +   P +         G 
Sbjct: 199 GIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTS---IQDQEGNDLMPKLKEHVSQY--GY 253

Query: 208 KPVRELVKDDAWLNGEFI 225
            P  E    +A  N  F 
Sbjct: 254 IPKTEAEAVEASWNDTFA 271

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 7  RVLVTGAAGQIGYALVP-MIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
          R+LVTGAAGQ+G  +   +         +   +  +  + PA      V+ +L DA    
Sbjct: 5  RLLVTGAAGQLGRVMRERLAPMA-----EILRLADLSPLDPAGPNEECVQCDLADAN--A 57

Query: 66 LKGVVATTDAV 76
          +  +VA  D +
Sbjct: 58 VNAMVAGCDGI 68

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 34/212 (16%), Positives = 68/212 (32%), Gaps = 34/212 (16%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKM-- 56
           M K  +++   G     G +  P +  G++    +  +  L ++DIP   E L  V    
Sbjct: 4   MDK-RLKIATIGG----GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALA 58

Query: 57  ELVDAAFPLLKGVVATTDAVEACTGVN---IAVMVGGF---------PRKEGMERKDVMS 104
           + +     +   +  T D   A  G +       VGG          P K G+  ++   
Sbjct: 59  KRMVEKAGVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNG 118

Query: 105 --------KNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156
                   + + +       +E+   P+  ++   NPA      +  +        + C 
Sbjct: 119 PGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPAGMVTEAVLRYTKQEKVVGL-CN 176

Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188
             +     + ++   L V    V       NH
Sbjct: 177 VPIGMRMGVAKL---LGVDADRVHIDFAGLNH 205

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 1  MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI--PPAAEALNG----V 54
          +  + + + + GAAG +G  L   + +   LG        ++D+  P A    +G     
Sbjct: 10 LYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDAR 69

Query: 55 KMELVDAAFPLLKGVVAT-TDAV 76
            +L        + +V    D +
Sbjct: 70 AADLSAPG--EAEKLVEARPDVI 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	100.0
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	100.0
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	100.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	100.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	100.0
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	100.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	100.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	100.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	100.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	100.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	100.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	100.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	100.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	100.0
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	100.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	100.0
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	100.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	100.0
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	100.0
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	100.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	100.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	100.0
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	100.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	100.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	100.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	100.0
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	100.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	100.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	100.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	100.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	100.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	100.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	100.0
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	100.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	100.0
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	100.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	100.0
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	100.0
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	100.0
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	100.0
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	99.96
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	99.92
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	99.91
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	99.18
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	99.14
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	99.13
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	99.12
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	99.08
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	99.08
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	99.07
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	99.06
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	99.06
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	99.05
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	99.04
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.03
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	99.0
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	98.99
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	98.98
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	98.98
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	98.97
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	98.96
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	98.95
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	98.94
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	98.94
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	98.94
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	98.94
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	98.92
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	98.9
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	98.9
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	98.9
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	98.9
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	98.89
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	98.88
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	98.87
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	98.86
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	98.85
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	98.85
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.85
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	98.85
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	98.83
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	98.83
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	98.82
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	98.81
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	98.8
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	98.79
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	98.79
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	98.79
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	98.79
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	98.78
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	98.78
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	98.77
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.77
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	98.75
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	98.75
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	98.75
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	98.75
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	98.73
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	98.73
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	98.72
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	98.7
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	98.7
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	98.69
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	98.68
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	98.66
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	98.66
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	98.66
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	98.64
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	98.64
4f6c_A	427	AUSA reductase domain protein; thioester reductase	98.63
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	98.63
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	98.63
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	98.63
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	98.62
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	98.61
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.61
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.6
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	98.59
1xq6_A	253	Unknown protein; structural genomics, protein stru	98.59
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	98.58
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.58
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	98.57
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	98.57
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	98.57
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	98.56
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.55
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	98.54
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	98.5
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	98.5
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.5
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	98.49
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	98.48
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	98.47
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	98.47
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	98.47
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	98.45
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.45
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	98.44
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	98.44
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.44
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	98.44
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.44
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	98.43
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	98.43
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	98.43
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	98.43
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	98.43
4f6l_B	508	AUSA reductase domain protein; thioester reductase	98.42
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	98.42
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	98.42
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	98.42
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	98.42
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	98.41
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	98.41
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	98.4
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	98.4
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	98.39
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	98.39
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	98.38
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	98.38
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	98.38
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	98.38
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.37
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.37
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	98.37
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	98.37
4dqx_A	277	Probable oxidoreductase protein; structural genomi	98.36
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	98.36
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.36
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	98.35
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	98.35
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.34
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	98.34
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	98.34
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	98.33
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	98.33
1xq1_A	266	Putative tropinone reducatse; structural genomics,	98.33
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	98.32
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	98.32
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	98.32
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	98.32
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	98.32
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	98.32
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	98.32
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	98.32
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	98.31
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	98.31
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.31
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	98.3
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	98.3
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	98.3
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	98.29
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	98.29
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	98.29
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	98.29
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	98.28
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	98.28
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	98.28
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	98.28
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	98.27
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	98.26
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	98.25
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.25
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.25
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	98.25
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	98.25
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	98.24
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	98.24
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	98.24
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	98.24
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	98.23
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.23
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	98.22
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	98.22
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	98.22
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	98.22
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	98.21
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	98.21
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	98.21
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	98.21
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	98.21
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	98.21
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	98.21
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	98.21
4e4y_A	244	Short chain dehydrogenase family protein; structur	98.21
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	98.21
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	98.2
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	98.2
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	98.2
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	98.19
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	98.19
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	98.19
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.18
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	98.18
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	98.18
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	98.18
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	98.17
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	98.17
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	98.17
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	98.17
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	98.17
3cxt_A	291	Dehydrogenase with different specificities; rossma	98.17
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	98.16
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.16
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	98.16
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	98.16
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	98.15
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	98.15
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	98.15
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	98.15
1xhl_A	297	Short-chain dehydrogenase/reductase family member	98.15
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	98.15
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.15
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.14
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	98.14
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	98.14
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.14
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	98.14
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	98.14
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	98.13
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	98.13
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	98.12
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	98.12
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	98.12
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	98.12
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	98.12
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	98.12
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	98.12
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	98.11
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	98.11
1spx_A	278	Short-chain reductase family member (5L265); paral	98.11
3rih_A	293	Short chain dehydrogenase or reductase; structural	98.1
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	98.1
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	98.1
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	98.1
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	98.1
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.09
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	98.09
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	98.09
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.09
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	98.09
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	98.09
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	98.09
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	98.09
1xkq_A	280	Short-chain reductase family member (5D234); parra	98.09
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	98.08
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	98.08
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	98.08
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	98.08
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	98.07
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	98.07
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	98.07
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	98.07
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	98.06
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	98.06
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	98.06
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.06
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	98.06
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	98.06
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	98.05
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	98.04
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.04
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	98.04
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.04
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	98.03
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	98.03
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	98.03
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	98.03
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	98.03
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	98.02
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	98.02
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.02
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	98.01
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	98.01
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	98.0
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.99
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.99
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	97.99
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	97.99
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.98
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.97
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	97.97
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	97.97
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.97
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.96
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.95
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.95
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.94
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.94
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.94
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.94
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	97.93
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	97.93
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	97.93
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.92
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.92
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.92
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.92
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.91
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.91
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.91
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.91
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.91
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.91
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.91
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	97.91
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	97.9
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	97.89
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.89
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.89
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.89
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.89
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.88
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.86
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.86
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.86
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.85
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.84
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.83
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.79
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.79
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.78
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.78
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.77
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	97.77
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.76
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.76
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	97.76
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	97.75
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.74
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.74
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	97.73
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.73
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.73
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.7
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.7
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	97.7
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	97.69
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.69
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.67
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.67
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.66
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.66
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.66
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	97.65
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.61
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.61
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.59
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	97.59
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.58
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	97.58
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.58
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.57
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.57
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.55
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.54
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.54
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	97.54
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.53
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.53
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.53
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.52
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.52
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.52
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	97.51
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	97.51
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	97.49
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.48
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	97.47
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.46
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.39
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.38
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.36
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.36
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.36
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.34
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.33
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	97.31
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.25
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.24
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.23
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.22
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	97.22
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.21
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.21
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.2
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	97.19
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.19
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	97.19
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.19
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.17
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	97.15
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.13
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.12
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.11
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.11
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	97.1
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.08
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.03
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.01
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	96.98
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.94
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.89
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	96.88
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	96.84
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	96.82
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	96.77
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.74
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.74
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.69
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.69
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	96.69
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	96.68
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.67
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	96.64
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	96.61
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	96.58
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.58
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	96.57
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	96.56
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.54
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	96.54
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	96.53
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	96.51
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	96.5
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	96.47
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.4
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.37
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	96.37
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	96.35
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.34
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.25
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	96.19
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	96.19
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	96.18
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	96.15
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.14
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	96.13
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.12
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	96.11
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	96.09
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	96.09
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	96.08
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.07
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.01
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	95.98
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	95.97
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	95.97
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	95.95
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	95.9
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.89
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.88
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	95.85
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	95.83
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	95.81
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	95.78
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	95.78
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	95.76
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	95.75

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=100.00  E-value=4e-68  Score=492.02  Aligned_cols=284  Identities=52%  Similarity=0.825  Sum_probs=258.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      +++.||+|+||+|+||+++++.|+++.+++++++.+|+|+|+++..++++|.++||+|++++....+.++++.+++++||
T Consensus        22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~a  101 (345)
T 4h7p_A           22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGV  101 (345)
T ss_dssp             CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTC
T ss_pred             CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCC
Confidence            45679999999999999999999999999988888999999987667889999999999988888888999999999999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCC-CcEEeeehhhH
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPA-KNITCLTRLDH  161 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~-~~i~~~t~ld~  161 (300)
                      |+||++||.||+|||+|.||+..|++|++++++.|.++++|+++++++|||+|++++++++.++++|+ ++|+++|.||+
T Consensus       102 dvVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~~~~~g~~~~r~i~~~t~LDs  181 (345)
T 4h7p_A          102 AIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSAQGKLNPRHVTAMTRLDH  181 (345)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHHTTTCSCGGGEEECCHHHH
T ss_pred             CEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHHHHccCCCCcceeeeccchhH
Confidence            99999999999999999999999999999999999999987999999999999999999987677654 55899999999


Q ss_pred             HHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcCCc
Q 022227          162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKL  241 (300)
Q Consensus       162 ~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~  241 (300)
                      +|+++++|+++|++|++|++++||||||++|||+||++++    +|+|+.+++.+ +|..+++.++++++|++|++.||.
T Consensus       182 ~R~~~~la~~~~v~~~~V~~~~V~G~HG~t~vp~~s~a~v----~g~~~~~~~~~-~~~~~~~~~~v~~~g~eIi~~kg~  256 (345)
T 4h7p_A          182 NRALSLLARKAGVPVSQVRNVIIWGNHSSTQVPDTDSAVI----GTTPAREAIKD-DALDDDFVQVVRGRGAEIIQLRGL  256 (345)
T ss_dssp             HHHHHHHHHHHTSCGGGEECCEEEBCSSTTCEEECTTCEE----TTEEGGGGCCC-------HHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHCcChhheecceeecCCCCeEEeeeccceE----CCccHHHhcch-hhHHHHHHHHHHhhhhhhhhcCCC
Confidence            9999999999999999999888899999999999999999    99999998865 466678999999999999999999


Q ss_pred             cccchHHHHHHHHHhhhhccCCC-----------ccccCCCCCeEEEEeEEE-CCeeeeeee
Q 022227          242 SSALSAASSACDHIRDWVLGTPE-----------VGSLLIFTPMIYTELVSW-LEPWTAIVG  291 (300)
Q Consensus       242 t~~~s~a~ai~~~~~~~~~~t~~-----------~g~ygi~~~v~~s~Pv~~-~~~~~~~~~  291 (300)
                      ++++|+|.|+++++++|+.+++.           +|+||+|+|+|||+||++ ++.|..|++
T Consensus       257 ss~~s~a~a~~~~~~~~l~~~~~~~~vs~~v~s~~g~YGi~~~v~~s~Pv~~~~G~~~iv~~  318 (345)
T 4h7p_A          257 SSAMSAAKAAVDHVHDWIHGTPEGVYVSMGVYSDENPYGVPSGLIFSFPCTCHAGEWTVVSG  318 (345)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCTTCCCSSCEEEEEEEEETTEEEECCS
T ss_pred             cchhhHHHHHHHHHHHHhcCCCCceEEEEEEEeCCCCcCCCCCEEEEEEEEEeCCEEEEeCC
Confidence            89999999999999999977532           489999999999999999 799999874

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=100.00  E-value=2.2e-67  Score=490.03  Aligned_cols=283  Identities=41%  Similarity=0.586  Sum_probs=259.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +++||+||||+|+||+++++.|+.++++++++++.++++|++.++++++|.++||+|+.+++..++.++++.+++++|||
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daD  110 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD  110 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCC
Confidence            46899999999999999999999999999777777777888777788999999999999777778888889999999999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehhhHHH
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR  163 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R  163 (300)
                      +||++||.||+|||+|.||+..|++|++++++.|.+++.|++++|++|||+|++|++++++++.+|+++|+++|.||++|
T Consensus       111 vVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia~k~sg~~~~rvig~gT~LDsaR  190 (375)
T 7mdh_A          111 WALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENR  190 (375)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHHHH
T ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHcCCCCccEEEeeehHHHHH
Confidence            99999999999999999999999999999999999984347999999999999999999985566766799999999999


Q ss_pred             HHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcCCccc
Q 022227          164 ALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS  243 (300)
Q Consensus       164 ~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~t~  243 (300)
                      +++++|+++|++|++|++++||||||+||||+||+++|    +|+|+.+++.+++|..++|.++|+++|++|+++||.|+
T Consensus       191 ~r~~lA~~lgv~~~~V~~v~V~GeHgdt~vp~~S~a~V----~G~pl~~~~~~~~~~~~~i~~~v~~~g~eII~~kG~ts  266 (375)
T 7mdh_A          191 AKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKI----DGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKWGRSS  266 (375)
T ss_dssp             HHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEE----TTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHTSSCC
T ss_pred             HHHHHHHHhCcChhhcccceEEecCCCceeeeeecccC----CCEEhhHhccchhhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            99999999999999999855799999999999999999    99999999988788888999999999999999999999


Q ss_pred             cchHHHHHHHHHhhhhccC----------CCcc-ccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          244 ALSAASSACDHIRDWVLGT----------PEVG-SLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       244 ~~s~a~ai~~~~~~~~~~t----------~~~g-~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      ++++|.++++++++|++|+          +.+| +||+|+|+|||+||++  ++.|.+++
T Consensus       267 ~a~aa~~i~~~i~~~l~g~d~~~v~~vs~~~~G~~YGi~~dv~~s~P~vlg~~Gv~~iv~  326 (375)
T 7mdh_A          267 AASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELAT  326 (375)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCTTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECC
T ss_pred             hHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCccCCCCCceEEEEEEEEcCCeeEEecC
Confidence            8788899999999988654          3448 7999999999999999  59999986

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=100.00  E-value=9.5e-66  Score=475.48  Aligned_cols=285  Identities=57%  Similarity=0.882  Sum_probs=259.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +|+||+||||+|+||+++++.|+.+++++++++++|+|+|+++.+++++|.++||+|+.+++...+.++++.+++++|||
T Consensus         2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daD   81 (333)
T 5mdh_A            2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD   81 (333)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCC
Confidence            57899999999999999999999999998888889999999765678999999999987777678888889999999999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehhhHHH
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR  163 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R  163 (300)
                      +||++||.||++|++|.|++..|+++++++++++++++|+.+++|++|||+|++|++++++++++|+++|+++|.||++|
T Consensus        82 vVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~~~~~~~~p~~~ig~~t~LDs~R  161 (333)
T 5mdh_A           82 VAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNR  161 (333)
T ss_dssp             EEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHHHH
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHHHHHcCCCCcCEEEEEEhHHHHH
Confidence            99999999999999999999999999999999999999865689999999999999999985567877899999999999


Q ss_pred             HHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcc--hhhhhcccccchhHHHHHHHhHHHHHHhcCCc
Q 022227          164 ALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKP--VRELVKDDAWLNGEFITTVQQRGAAIIKARKL  241 (300)
Q Consensus       164 ~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p--~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~  241 (300)
                      +++++|+++|++|++|++++||||||++|||+||+++|..  +|+|  +.+++++++|..++|.++++++|++|+++||.
T Consensus       162 ~~~~la~~l~v~~~~v~~~vV~GeHgds~vp~~S~a~v~i--~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~~k~~  239 (333)
T 5mdh_A          162 AKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKL--QAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKL  239 (333)
T ss_dssp             HHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEEEC--SSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHhCcCHHHeeecEEEEcCCCCEEEeeeccEecc--CCeeccHHHhhccccccHHHHHHHHHHHHHHHHHccCc
Confidence            9999999999999999998779999999999999998632  5765  46888777788889999999999999999998


Q ss_pred             cccchHHHHHHHHHhhhhccCC----------Ccc-ccCCCCCeEEEEeEEE-CCeeeeee
Q 022227          242 SSALSAASSACDHIRDWVLGTP----------EVG-SLLIFTPMIYTELVSW-LEPWTAIV  290 (300)
Q Consensus       242 t~~~s~a~ai~~~~~~~~~~t~----------~~g-~ygi~~~v~~s~Pv~~-~~~~~~~~  290 (300)
                      ++++++|.++++++++|+.+++          .+| +||+|+|+|||+||++ ++.|.+++
T Consensus       240 ssa~~~a~~~~~~~~~il~~~~~~~v~~~s~~~~G~~YGi~~~v~~s~P~~~~~Gv~~iv~  300 (333)
T 5mdh_A          240 SSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVE  300 (333)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCSSSCCSSCEEEEEEEEETTEEEECC
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCcccCCCCCeEEEEEEEEcCCeEEEcC
Confidence            8888999999999999887753          238 9999999999999999 89999886

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=100.00  E-value=1.3e-60  Score=439.64  Aligned_cols=273  Identities=22%  Similarity=0.228  Sum_probs=244.5

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc-ccEEEeCChhhhc
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL-KGVVATTDAVEAC   79 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~-~~v~~~~~~~~a~   79 (300)
                      |+++++||+|+| +|+||+++++.|+..++++     +++|+|++  ++++++.++||.|+. +.. ..+.++++.++++
T Consensus         1 m~~~~~kI~ViG-aG~vG~~~a~~l~~~~~~~-----~l~l~D~~--~~k~~g~a~DL~~~~-~~~~~~v~i~~~~~~a~   71 (326)
T 3pqe_A            1 MNKHVNKVALIG-AGFVGSSYAFALINQGITD-----ELVVIDVN--KEKAMGDVMDLNHGK-AFAPQPVKTSYGTYEDC   71 (326)
T ss_dssp             -CCSCCEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSC--HHHHHHHHHHHHHTG-GGSSSCCEEEEECGGGG
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHHhCCCCc-----eEEEEecc--hHHHHHHHHHHHhcc-ccccCCeEEEeCcHHHh
Confidence            777789999999 6999999999999988765     89999996  578999999999983 443 3455555668999


Q ss_pred             CCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEe-eeh
Q 022227           80 TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC-LTR  158 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~-~t~  158 (300)
                      +|||+||+++|.|+++|++|.|++..|+++++++++.++++|| +++++++|||+|++|+++++. +++|++|+.| +|.
T Consensus        72 ~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p-~a~vlvvtNPvd~~t~~~~k~-~g~p~~rviG~gt~  149 (326)
T 3pqe_A           72 KDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGF-DGIFLVATNPVDILTYATWKF-SGLPKERVIGSGTT  149 (326)
T ss_dssp             TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTH
T ss_pred             CCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcC-CeEEEEcCChHHHHHHHHHHh-cCCCHHHEEeeccc
Confidence            9999999999999999999999999999999999999999997 789999999999999999998 7999999655 699


Q ss_pred             hhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcc----cccchhHHHHHHHhHHHH
Q 022227          159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD----DAWLNGEFITTVQQRGAA  234 (300)
Q Consensus       159 ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~----~~~~~~~~~~~v~~~~~~  234 (300)
                      ||++|+++++|+++|+++++|+++ ||||||+||||+||+++|    +|+|+.+++++    ++|..++|.++|+++|++
T Consensus       150 LD~~R~~~~la~~lgv~~~~V~~~-V~GeHG~t~vp~~S~~~v----~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~e  224 (326)
T 3pqe_A          150 LDSARFRFMLSEYFGAAPQNVCAH-IIGEHGDTELPVWSHANV----GGVPVSELVEKNDAYKQEELDQIVDDVKNAAYH  224 (326)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECC-EEBSSSTTCEECGGGCEE----TTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCCCHHHceee-eeecCCCceeeeeeeeeE----CCEEHHHHhhcccCCCHHHHHHHHHHHHhhhhe
Confidence            999999999999999999999997 599999999999999999    99999999865    457778999999999999


Q ss_pred             HHhcCCccccchHHHHHHHHHhhhhcc--------CCCccccCCCCCeEEEEeEEE--CCeeeeeee
Q 022227          235 IIKARKLSSALSAASSACDHIRDWVLG--------TPEVGSLLIFTPMIYTELVSW--LEPWTAIVG  291 (300)
Q Consensus       235 i~~~kg~t~~~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~  291 (300)
                      |+++||.|++ ++|.|+++++++|+.+        ++.+|+||++ |+|||+||++  ++.|.+++-
T Consensus       225 Ii~~kG~t~~-a~a~a~~~~~~ail~~~~~v~~~s~~~~g~yg~~-~v~~s~P~~lg~~Gv~~iv~l  289 (326)
T 3pqe_A          225 IIEKKGATYY-GVAMSLARITKAILHNENSILTVSTYLDGQYGAD-DVYIGVPAVVNRGGIAGITEL  289 (326)
T ss_dssp             HHHHHSCCCH-HHHHHHHHHHHHHHTTCCEEECCEEEEESGGGCE-EEEEECCEEEETTEEEEECCC
T ss_pred             eeeCCCCcHH-HHHHHHHHHHHHHhcCCCcEEEEEEeeccccCCC-ceEEEEEEEEcCCceEEEecC
Confidence            9999997765 7889999999998754        3445999997 9999999999  699998873

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=8.9e-61  Score=440.33  Aligned_cols=271  Identities=20%  Similarity=0.251  Sum_probs=228.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      ++++||+|+| +|+||+++++.|+..++++     +++|+|++  +++++|.++||+|+. ++..++.++++.+++++||
T Consensus         7 ~~~~kV~ViG-aG~vG~~~a~~l~~~~~~~-----el~l~D~~--~~k~~g~a~DL~~~~-~~~~~~~i~~~~~~a~~~a   77 (326)
T 3vku_A            7 KDHQKVILVG-DGAVGSSYAYAMVLQGIAQ-----EIGIVDIF--KDKTKGDAIDLEDAL-PFTSPKKIYSAEYSDAKDA   77 (326)
T ss_dssp             CCCCEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSC--HHHHHHHHHHHHTTG-GGSCCCEEEECCGGGGTTC
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHhCCCCC-----eEEEEeCC--hHHHHHHHhhHhhhh-hhcCCcEEEECcHHHhcCC
Confidence            4568999999 6999999999999998876     89999996  578999999999987 3334566666778999999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEe-eehhhH
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC-LTRLDH  161 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~-~t~ld~  161 (300)
                      |+||++||.||+|||+|.||+.+|+++++++++.|+++|| +++++++|||+|++|+++++. +++|++|+.| +|.||+
T Consensus        78 DiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~ilvvtNPvdi~t~~~~k~-~g~p~~rviG~gt~LD~  155 (326)
T 3vku_A           78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGF-NGIFLVAANPVDILTYATWKL-SGFPKNRVVGSGTSLDT  155 (326)
T ss_dssp             SEEEECCCCC----------------CHHHHHHHHHTTTC-CSEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTHHHH
T ss_pred             CEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEccCchHHHHHHHHHh-cCCCHHHeeeecccCcH
Confidence            9999999999999999999999999999999999999997 789999999999999999998 7999999755 699999


Q ss_pred             HHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcc----cccchhHHHHHHHhHHHHHHh
Q 022227          162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD----DAWLNGEFITTVQQRGAAIIK  237 (300)
Q Consensus       162 ~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~----~~~~~~~~~~~v~~~~~~i~~  237 (300)
                      +|+++++|+++|+++++|+++ ||||||+||||+||+++|    +|+|+.+++.+    ++|..++|.++++++|++|++
T Consensus       156 ~R~~~~la~~lgv~~~~V~~~-ViGeHGdt~vp~~S~a~v----~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~  230 (326)
T 3vku_A          156 ARFRQSIAKMVNVDARSVHAY-IMGEHGDTEFPVWSHANI----GGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIK  230 (326)
T ss_dssp             HHHHHHHHHHHTSCGGGEECC-EEBSSSTTCEECGGGCEE----TTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHCeEE-EEcCCCCeeEEeeecccc----CCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999997 599999999999999999    99999998865    467778999999999999999


Q ss_pred             cCCccccchHHHHHHHHHhhhhcc--------CCCccccCCCCCeEEEEeEEE--CCeeeeeee
Q 022227          238 ARKLSSALSAASSACDHIRDWVLG--------TPEVGSLLIFTPMIYTELVSW--LEPWTAIVG  291 (300)
Q Consensus       238 ~kg~t~~~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~  291 (300)
                      +||.|++ ++|.|+++++++|+.+        ++.+|+||++ |+|||+||++  ++.|.+++-
T Consensus       231 ~kG~t~~-a~a~a~~~~~~ail~~~~~v~~~s~~~~g~yg~~-~v~~s~P~~lg~~Gv~~iv~l  292 (326)
T 3vku_A          231 LKGATFY-GIATALARISKAILNDENAVLPLSVYMDGQYGLN-DIYIGTPAVINRNGIQNILEI  292 (326)
T ss_dssp             HHSCCCH-HHHHHHHHHHHHHHTTCCEEEEEEEEEEEGGGEE-EEEEEEEEEEETTEEEEECCC
T ss_pred             cCCCchH-HHHHHHHHHHHHHhcCCCceEEEEeeccCccCCC-ceEEEEEEEEcCCceEEEecC
Confidence            9998775 7888999999887753        4455999996 9999999999  699998874

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=100.00  E-value=7.2e-60  Score=435.13  Aligned_cols=270  Identities=19%  Similarity=0.278  Sum_probs=239.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc-cCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~-~~~~~~v~~~~~~~~a~~~a   82 (300)
                      +.+||+|+| +|.||+++++.|+.+++..     +++|+|++  +++++|.++||+|+. ++....+..+++ +++++||
T Consensus        18 ~~~kV~ViG-aG~vG~~~a~~l~~~~~~~-----el~L~Di~--~~~~~g~a~DL~~~~~~~~~~~i~~~~d-~~~~~~a   88 (331)
T 4aj2_A           18 PQNKITVVG-VGAVGMACAISILMKDLAD-----ELALVDVI--EDKLKGEMMDLQHGSLFLKTPKIVSSKD-YSVTANS   88 (331)
T ss_dssp             CSSEEEEEC-CSHHHHHHHHHHHHTTCCS-----EEEEECSC--HHHHHHHHHHHHHTGGGCSCCEEEECSS-GGGGTTE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCCc-----eEEEEeCC--hHHHHHHHHhhhhhhhccCCCeEEEcCC-HHHhCCC
Confidence            468999999 5999999999999988754     89999996  578999999999986 333445555555 5789999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-EeeehhhH
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDH  161 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~ld~  161 (300)
                      |+||++||.||+|||+|.||+.+|+++++++++.|+++|| +++++++|||+|++|+++++. +++|++|+ +.+|.||+
T Consensus        89 DiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~vlvvtNPvdi~t~~~~k~-sg~p~~rviG~gt~LD~  166 (331)
T 4aj2_A           89 KLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSP-QCKLLIVSNPVDILTYVAWKI-SGFPKNRVIGSGCNLDS  166 (331)
T ss_dssp             EEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTHHHH
T ss_pred             CEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecChHHHHHHHHHHH-hCCCHHHEEeeccccHH
Confidence            9999999999999999999999999999999999999997 799999999999999999998 69999885 66699999


Q ss_pred             HHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhc-------ccccchhHHHHHHHhHHHH
Q 022227          162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVK-------DDAWLNGEFITTVQQRGAA  234 (300)
Q Consensus       162 ~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~-------~~~~~~~~~~~~v~~~~~~  234 (300)
                      +|+++++|+++|+++++|+.+ ||||||++|||+||+++|    +|+|+.+++.       +++|  ++|.++++++|++
T Consensus       167 ~R~~~~la~~lgv~~~~V~~~-ViGeHG~s~vp~~S~~~v----~G~p~~~~~~~~~~~~~~~~~--~~i~~~v~~~g~e  239 (331)
T 4aj2_A          167 ARFRYLMGERLGVHPLSCHGW-VLGEHGDSSVPVWSGVNV----AGVSLKSLNPQLGTDADKEQW--KDVHKQVVDSAYE  239 (331)
T ss_dssp             HHHHHHHHHHHTSCGGGCBCC-EEBCSSTTCEECGGGCEE----TTEEHHHHCTTTTSTTCTTCT--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHCEEe-EEecCCCceeEeeecCeE----CCEEHHHHHhhccCCCCHHHH--HHHHHHHHHhHHH
Confidence            999999999999999999998 599999999999999999    9999999864       2345  6899999999999


Q ss_pred             HHhcCCccccchHHHHHHHHHhhhhc--------cCCCccccCCCCCeEEEEeEEE--CCeeeeeeec
Q 022227          235 IIKARKLSSALSAASSACDHIRDWVL--------GTPEVGSLLIFTPMIYTELVSW--LEPWTAIVGH  292 (300)
Q Consensus       235 i~~~kg~t~~~s~a~ai~~~~~~~~~--------~t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~~  292 (300)
                      |+++||.|++ ++|.++++++++++.        +++.+|+||+++|+|||+||++  +++|.+++-.
T Consensus       240 Ii~~kg~t~~-a~a~a~a~~~~ail~d~~~~~~vs~~~~g~ygi~~~v~~s~P~~lg~~Gv~~iv~l~  306 (331)
T 4aj2_A          240 VIKLKGYTSW-AIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKVT  306 (331)
T ss_dssp             HHHHHSSCCH-HHHHHHHHHHHHHHTTCCEEEEEEEECTTGGGCCSCCEEEEEEEEETTEEEEEECCC
T ss_pred             HhhcCCCCch-hHHHHHHHHHHHHHhCCCCeEEEEEecCCccCCcCceEEEEEEEEcCCeeEEEccCC
Confidence            9999998775 788888888887664        4566799999999999999999  6999998743

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=100.00  E-value=1.7e-58  Score=427.55  Aligned_cols=285  Identities=51%  Similarity=0.771  Sum_probs=254.8

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC--CchhhhhhhhhhhhhhccCCcccEEEeCChhhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLLKGVVATTDAVEA   78 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~--~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a   78 (300)
                      |+++++||+||||+|+||+++++.|+.+++++.++..+|+|+|++  +.++++++.++||.|..++...++..+++.+++
T Consensus         1 m~~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~a   80 (329)
T 1b8p_A            1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTA   80 (329)
T ss_dssp             --CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHH
Confidence            766789999999889999999999999888765555589999996  114678899999999755555678888899999


Q ss_pred             cCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeee
Q 022227           79 CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALILKEFAPSIPAKNITCLT  157 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t  157 (300)
                      ++|||+||++||.+++++++|.+++.+|+++++++++++++++ | ++++|++|||+|++|+++++..+++|++|++++|
T Consensus        81 l~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p-~a~ii~~SNPv~~~t~~~~~~~~~~p~~~v~g~t  159 (329)
T 1b8p_A           81 FKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASR-NIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAML  159 (329)
T ss_dssp             TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCT-TCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECC
T ss_pred             hCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEccCchHHHHHHHHHHcCCCCHHHEEEee
Confidence            9999999999999999999999999999999999999999997 6 7899999999999999999985599999999999


Q ss_pred             hhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHh
Q 022227          158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK  237 (300)
Q Consensus       158 ~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~  237 (300)
                      .||+.|+++++|+++|+++++|+.++||||||++++|+||++++    +|+|+.+++.+++|..+++.++++++|++|++
T Consensus       160 ~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~s~~p~~s~~~v----~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~  235 (329)
T 1b8p_A          160 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQI----DGASVKDMINDDAWNRDTFLPTVGKRGAAIID  235 (329)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSCEE----TTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcCHHHceEEEEEeccCCcEeeehHHCeE----CCeeHHHHhccchhhHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999766799999999999999999    99999998866667678999999999999999


Q ss_pred             cCCccccchHHHHHHHHHhhhhccC---------CCccccCCCCCeEEEEeEEE-CCeeeeee
Q 022227          238 ARKLSSALSAASSACDHIRDWVLGT---------PEVGSLLIFTPMIYTELVSW-LEPWTAIV  290 (300)
Q Consensus       238 ~kg~t~~~s~a~ai~~~~~~~~~~t---------~~~g~ygi~~~v~~s~Pv~~-~~~~~~~~  290 (300)
                      .||.|+++++|.++++++++|+.++         +.+|+||+|+|+|||+||++ +++|.+++
T Consensus       236 ~kg~~~~~~~a~a~~~~~~ai~~~~~~~~~~~s~~~~g~yg~~~~~~~s~P~~i~~Gv~~i~~  298 (329)
T 1b8p_A          236 ARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQ  298 (329)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHHHCCTTCCEEEEEECCSGGGCCTTCEEEEEEEEETTEEEECC
T ss_pred             ccCCChHHHHHHHHHHHHHHHhcCCCCcEEEEEEEecCccCCCCCeEEEEEEEEcCCEEEecC
Confidence            9998888888889999999988662         33489999999999999999 89998876

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=3.8e-59  Score=432.19  Aligned_cols=262  Identities=27%  Similarity=0.370  Sum_probs=226.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      ++.+||+|+||+|+||+++++.++..++..     +|+|+|++  +++++|.++||+|+.++ ..++..+++++++++||
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~-----evvLiDi~--~~k~~g~a~DL~~~~~~-~~~i~~t~d~~~al~dA   77 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTP-----NLCLYDPF--AVGLEGVAEEIRHCGFE-GLNLTFTSDIKEALTDA   77 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCS-----CEEEECSC--HHHHHHHHHHHHHHCCT-TCCCEEESCHHHHHTTE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCC-----EEEEEeCC--chhHHHHHHhhhhCcCC-CCceEEcCCHHHHhCCC
Confidence            356799999977999999999999888654     79999996  57899999999998643 24677788888999999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeE-EEEecCchhhHHHHHHHHCCCCCCCcEEeeehhhH
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK-VLVVANPANTNALILKEFAPSIPAKNITCLTRLDH  161 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~-viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~  161 (300)
                      |+||++||.|+++|++|.|++.+|+++++++++.++++|| +++ ++++|||+|++|++++++ +++|++|+.++|.||+
T Consensus        78 DvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p-~a~~vlvvsNPvd~~t~i~~k~-sg~p~~rv~g~t~LDs  155 (343)
T 3fi9_A           78 KYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCP-DCKHVIIIFNPADITGLVTLIY-SGLKPSQVTTLAGLDS  155 (343)
T ss_dssp             EEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCT-TCCEEEECSSSHHHHHHHHHHH-HTCCGGGEEEECCHHH
T ss_pred             CEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcc-CcEEEEEecCchHHHHHHHHHH-cCCCcceEEEecCcHH
Confidence            9999999999999999999999999999999999999997 675 899999999999999998 6899999889999999


Q ss_pred             HHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcc-----cccchhHHHHHHHhHHHHHH
Q 022227          162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD-----DAWLNGEFITTVQQRGAAII  236 (300)
Q Consensus       162 ~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~-----~~~~~~~~~~~v~~~~~~i~  236 (300)
                      +|+++++|+++|++|++|++..||||||++|||+||+++|    +|+|+.+++.+     ++|  ++|.++|+++|++|+
T Consensus       156 ~R~~~~la~~l~v~~~~v~~~~ViGeHgds~vp~~S~a~v----~G~pl~~~~~~~~~~~~~~--~~i~~~v~~~g~eIi  229 (343)
T 3fi9_A          156 TRLQSELAKHFGIKQSLVTNTRTYGGHGEQMAVFASTAKV----NGTPLTDLIGTDKLTNEQW--AELKQRVVKGGANII  229 (343)
T ss_dssp             HHHHHHHHHHHTSCGGGEECCCEEESSGGGEEECGGGCEE----TTEEGGGTTTBTTBCHHHH--HHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHhCcCHHHcccceEEEcCCCceeeeeecceE----CCEEhhHhccccCCCHHHH--HHHHHHHHhhhHHHH
Confidence            9999999999999999998433599999999999999999    99999998642     334  489999999999999


Q ss_pred             hcCCccccchHHHHHHHHHhhhhccCC--------CccccCCCCCeEEEEeEEE
Q 022227          237 KARKLSSALSAASSACDHIRDWVLGTP--------EVGSLLIFTPMIYTELVSW  282 (300)
Q Consensus       237 ~~kg~t~~~s~a~ai~~~~~~~~~~t~--------~~g~ygi~~~v~~s~Pv~~  282 (300)
                      ++||+|+++|+|.|+++++++|+.++.        ..|+ + ++|+|||+||++
T Consensus       230 ~~kg~ss~~s~A~a~~~~~~ail~d~~~v~~~s~~~~g~-~-~~~v~~s~P~~l  281 (343)
T 3fi9_A          230 KLRGRSSFQSPSYVSIEMIRAAMGGEAFRWPAGCYVNVP-G-FEHIMMAMETTI  281 (343)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTSSCCCSCEEEEEEET-T-EEEEEEEESEEE
T ss_pred             HccCCCcHHhHHHHHHHHHHHHHhCCCceEEEEEEEeCC-C-cCceEEEeEEEE
Confidence            999999888999999999999987653        2254 3 579999999999

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=100.00  E-value=8.1e-59  Score=425.72  Aligned_cols=266  Identities=22%  Similarity=0.322  Sum_probs=227.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcc--cEEEeCChhhhcCCCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLK--GVVATTDAVEACTGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~--~v~~~~~~~~a~~~aD   83 (300)
                      |||+|+| +|.||+++++.|++.++++     +++|+|+++  ++++|.++||+|+.++...  ++..+ +.+++++|||
T Consensus         1 Mkv~ViG-aG~vG~~~a~~l~~~~~~~-----el~l~D~~~--~k~~g~a~DL~~~~~~~~~~~~v~~~-~~~~a~~~aD   71 (314)
T 3nep_X            1 MKVTVIG-AGNVGATVAECVARQDVAK-----EVVMVDIKD--GMPQGKALDMRESSPIHGFDTRVTGT-NDYGPTEDSD   71 (314)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCSS-----EEEEECSST--THHHHHHHHHHHHHHHHTCCCEEEEE-SSSGGGTTCS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCCC-----EEEEEeCch--HHHHHHHHHHhccccccCCCcEEEEC-CCHHHhCCCC
Confidence            5999999 6999999999999988765     899999975  6789999999998754332  33333 6689999999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEee-ehhhHH
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHN  162 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~-t~ld~~  162 (300)
                      +||+++|.||+||++|.|++.+|+++++++++.++++|| +++++++|||+|++|+++++. +++|++|+.|. |.||++
T Consensus        72 vVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~vivvtNPvd~~t~~~~k~-~g~p~~rviG~~t~LD~~  149 (314)
T 3nep_X           72 VCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSP-DSTIIVVANPLDVMTYVAYEA-SGFPTNRVMGMAGVLDTG  149 (314)
T ss_dssp             EEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTCT-TCEEEECCSSHHHHHHHHHHH-HTCCGGGEEECCHHHHHH
T ss_pred             EEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCC-CcEEEecCCchhHHHHHHHHh-cCCChHHEEeecCchHHH
Confidence            999999999999999999999999999999999999997 799999999999999999998 79999997666 599999


Q ss_pred             HHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcCCcc
Q 022227          163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS  242 (300)
Q Consensus       163 R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~t  242 (300)
                      |+++++|+++|+++++|++++ |||||+||||+||+++|    +|+|+.++++++ | .++|.++++++|++|+++||.+
T Consensus       150 R~~~~la~~lgv~~~~v~~~V-iG~Hg~t~vp~~S~~~v----~g~p~~~~~~~~-~-~~~i~~~v~~~g~eIi~~kg~s  222 (314)
T 3nep_X          150 RFRSFIAEELDVSVRDVQALL-MGGHGDTMVPLPRYTTV----GGIPVPQLIDDA-R-IEEIVERTKGAGGEIVDLMGTS  222 (314)
T ss_dssp             HHHHHHHHHHTCCGGGEEEEE-EESSGGGEEEEEEEEEE----TTEEGGGTSCHH-H-HHHHHHHHHTHHHHHHHHHSSC
T ss_pred             HHHHHHHHHhCcCHHHeEEEE-ECCCCCcEEeeeecCeE----CcEehhhccCHH-H-HHHHHHHHHHhHHHHHhccCCc
Confidence            999999999999999999985 89999999999999999    999999988544 4 3689999999999999999865


Q ss_pred             ccchHHHHHHHHHhhhhcc--------CCCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          243 SALSAASSACDHIRDWVLG--------TPEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       243 ~~~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      +++++|.|+++++++|+.+        ++.+|+||+ +|+|||+||++  ++.|.++.
T Consensus       223 a~~a~a~a~~~~~~ail~~~~~v~~~s~~~~g~yg~-~~~~~s~P~~lg~~Gv~~v~~  279 (314)
T 3nep_X          223 AWYAPGAAAAEMTEAILKDNKRILPCAAYCDGEYGL-DDLFIGVPVKLGAGGVEEVIE  279 (314)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCeEEEEEEEeccccCC-CceEEEEEEEEeCCEEEEecC
Confidence            5568899999999887643        345599999 59999999999  46666654

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=100.00  E-value=5.4e-58  Score=420.62  Aligned_cols=272  Identities=20%  Similarity=0.299  Sum_probs=238.2

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC--CcccEEEeCChhhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEA   78 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~--~~~~v~~~~~~~~a   78 (300)
                      |+|+.+||+|+| +|.+|+++++.|+..++ +     +++|+|+++.+++++|.++|+.|+...  ...+++.+++ +++
T Consensus         4 m~~~~~kv~ViG-aG~vG~~ia~~l~~~g~-~-----~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-~~a   75 (315)
T 3tl2_A            4 MTIKRKKVSVIG-AGFTGATTAFLLAQKEL-A-----DVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-YAD   75 (315)
T ss_dssp             CCCCCCEEEEEC-CSHHHHHHHHHHHHTTC-C-----EEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-GGG
T ss_pred             cccCCCEEEEEC-CCHHHHHHHHHHHhCCC-C-----eEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-HHH
Confidence            777778999999 69999999999998876 5     899999974357889999999997621  2345665655 789


Q ss_pred             cCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEe-ee
Q 022227           79 CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC-LT  157 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~-~t  157 (300)
                      ++|||+||+++|.||+||++|.|++.+|+++++++++.+.++|| +++++++|||+|++|+++++. +++|++|+.| +|
T Consensus        76 ~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~vlvvsNPvd~~t~~~~k~-sg~p~~rviG~gt  153 (315)
T 3tl2_A           76 TADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSP-NAIIVVLTNPVDAMTYSVFKE-AGFPKERVIGQSG  153 (315)
T ss_dssp             GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECCSSHHHHHHHHHHH-HCCCGGGEEECCH
T ss_pred             hCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEECCChHHHHHHHHHHh-cCCChHHEEeecc
Confidence            99999999999999999999999999999999999999999997 799999999999999999998 7999999655 59


Q ss_pred             hhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHh
Q 022227          158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK  237 (300)
Q Consensus       158 ~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~  237 (300)
                      .||+.|+++++|+++|+++++|++++ |||||++|||+||+++|    +|+|+.++++++ | .++|.++++++|++|++
T Consensus       154 ~LD~~R~~~~la~~lgv~~~~v~~~v-iG~Hg~t~vp~~S~~~v----~g~p~~~~~~~~-~-~~~i~~~v~~~g~eii~  226 (315)
T 3tl2_A          154 VLDTARFRTFIAQELNLSVKDITGFV-LGGHGDDMVPLVRYSYA----GGIPLETLIPKE-R-LEAIVERTRKGGGEIVG  226 (315)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCE-EBCSGGGCEECGGGCEE----TTEEGGGTSCHH-H-HHHHHHHHHTHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhCcCHHHceeeE-ecCCCCcceeecccCeE----CCEEHHHhCCHH-H-HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999986 89999999999999999    999999987654 3 35899999999999999


Q ss_pred             --cCCccccchHHHHHHHHHhhhhcc--------CCCccccCCCCCeEEEEeEEE--CCeeeeeee
Q 022227          238 --ARKLSSALSAASSACDHIRDWVLG--------TPEVGSLLIFTPMIYTELVSW--LEPWTAIVG  291 (300)
Q Consensus       238 --~kg~t~~~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~  291 (300)
                        +||.++ +++|.|+++++++|+.+        ++.+|+||+ +|+|||+||++  ++.|.++.-
T Consensus       227 ~~~kgst~-~a~a~a~~~~~~ail~~~~~v~~~s~~~~g~yg~-~~~~~s~P~~~g~~Gv~~v~~l  290 (315)
T 3tl2_A          227 LLGNGSAY-YAPAASLVEMTEAILKDQRRVLPAIAYLEGEYGY-SDLYLGVPVILGGNGIEKIIEL  290 (315)
T ss_dssp             HHSSSCCC-HHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCC
T ss_pred             hcCCCcch-HHHHHHHHHHHHHHHcCCCcEEEEEEeccCccCC-CceEEEEEEEEeCCEEEEEcCC
Confidence              566444 58999999999988754        344599999 59999999999  578877653

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=100.00  E-value=4.1e-57  Score=416.02  Aligned_cols=268  Identities=20%  Similarity=0.320  Sum_probs=232.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC--cccEEEeCChhhhcC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--LKGVVATTDAVEACT   80 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~--~~~v~~~~~~~~a~~   80 (300)
                      |+.+||+|+| +|.+|+++++.|+..++ .     +++|+|+++  +++++.++||+|+..+.  ..+++.+++ +++++
T Consensus         3 m~~~kI~iiG-aG~vG~~~a~~l~~~~~-~-----~v~l~Di~~--~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~   72 (321)
T 3p7m_A            3 MARKKITLVG-AGNIGGTLAHLALIKQL-G-----DVVLFDIAQ--GMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLE   72 (321)
T ss_dssp             CCCCEEEEEC-CSHHHHHHHHHHHHTTC-C-----EEEEECSSS--SHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGT
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHhCCC-c-----eEEEEeCCh--HHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHC
Confidence            4567999999 69999999999998875 2     799999975  67889999999986432  345555555 68999


Q ss_pred             CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeee-hh
Q 022227           81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT-RL  159 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t-~l  159 (300)
                      |||+||+++|.|++||++|.|++.+|+++++++++.+++++| ++++|++|||+|++|++++++ +++|++|+.|.| .|
T Consensus        73 ~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~vivvtNPvd~~t~~~~k~-sg~p~~rviG~~~~L  150 (321)
T 3p7m_A           73 NSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCP-NAFVICITNPLDIMVNMLQKF-SGVPDNKIVGMAGVL  150 (321)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECCSSHHHHHHHHHHH-HCCCGGGEEEECHHH
T ss_pred             CCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCC-CcEEEEecCchHHHHHHHHHh-cCCCHHHEEeeccch
Confidence            999999999999999999999999999999999999999996 799999999999999999998 799999976654 99


Q ss_pred             hHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccc----hhHHHHHHHhHHHHH
Q 022227          160 DHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWL----NGEFITTVQQRGAAI  235 (300)
Q Consensus       160 d~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~----~~~~~~~v~~~~~~i  235 (300)
                      |++|+++++|+++|+++++|+.++ |||||+++||+||+++|    +|+|+.++++ +.|.    .+++.++++++|++|
T Consensus       151 D~~R~~~~la~~l~v~~~~v~~~v-~G~HG~t~~p~~s~~~v----~g~p~~~~~~-~~~~~~~~~~~i~~~v~~~g~eI  224 (321)
T 3p7m_A          151 DSARFRTFLADELNVSVQQVQAYV-MGGHGDTMVPLTKMSNV----AGVSLEQLVK-EGKLKQERLDAIVSRTRSGGGEI  224 (321)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEECCE-EECSGGGEEECTTTCEE----TTEEHHHHHH-TTSSCHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHhCcCHHHceEee-ecCcCCceeeeeeeceE----CCEehhhhcc-ccCCCHHHHHHHHHHHHhhhHHH
Confidence            999999999999999999999885 89999999999999999    9999999873 3443    246889999999999


Q ss_pred             HhcCCccc-cchHHHHHHHHHhhhhcc--------CCCc-cccCCCCCeEEEEeEEEC--Ceeee
Q 022227          236 IKARKLSS-ALSAASSACDHIRDWVLG--------TPEV-GSLLIFTPMIYTELVSWL--EPWTA  288 (300)
Q Consensus       236 ~~~kg~t~-~~s~a~ai~~~~~~~~~~--------t~~~-g~ygi~~~v~~s~Pv~~~--~~~~~  288 (300)
                      +++||.++ ++++|.|+++++++|+.+        ++.+ |+||+|+|+|||+||+++  +.|.+
T Consensus       225 i~~~g~gsa~~~~a~a~~~~~~ail~~~~~v~~~s~~~~~g~ygi~~~v~~s~P~~~g~~Gv~~v  289 (321)
T 3p7m_A          225 VALLKTGSAYYAPAAAGIQMAESFLKDKKMILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPI  289 (321)
T ss_dssp             HHHHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTGGGCSSCEEEEEEEEEETTEEEEC
T ss_pred             HHhcCCCChHHHHHHHHHHHHHHHHcCCCcEEEEEEEccCcccCCCCCeEEEEEEEEcCCEEEEe
Confidence            99766533 479999999999998764        3456 899999999999999993  54443

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=100.00  E-value=1.9e-56  Score=405.83  Aligned_cols=254  Identities=20%  Similarity=0.229  Sum_probs=220.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC--cccEEEeCChhhhcCCCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--LKGVVATTDAVEACTGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~--~~~v~~~~~~~~a~~~aD   83 (300)
                      |||+|+| +|+||+++++.|+.+++++     ||+|+|++  +++++|+++||+|+....  ..++..++ .+++++|||
T Consensus         1 MKV~IiG-aG~VG~~~a~~l~~~~~~~-----el~L~Di~--~~~~~G~a~DL~h~~~~~~~~~~i~~~~-d~~~~~~aD   71 (294)
T 2x0j_A            1 MKLGFVG-AGRVGSTSAFTCLLNLDVD-----EIALVDIA--EDLAVGEAMDLAHAAAGIDKYPKIVGGA-DYSLLKGSE   71 (294)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHSCCS-----EEEEECSS--HHHHHHHHHHHHHHHGGGTCCCEEEEES-CGGGGTTCS
T ss_pred             CEEEEEC-cCHHHHHHHHHHHhCCCCC-----EEEEEeCC--CCcchhhhhhhhcccccCCCCCeEecCC-CHHHhCCCC
Confidence            6999999 6999999999999998876     89999996  478999999999987543  34455444 478999999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCc-EEeeehhhHH
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHN  162 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~-i~~~t~ld~~  162 (300)
                      +||++||.||+|||+|.||+..|++|+++++++|.++|| +++++++|||+|++|+++++. +++|+++ |+++|.||++
T Consensus        72 vVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p-~aivlvvsNPvd~~t~i~~k~-sg~p~~rvig~gT~LDs~  149 (294)
T 2x0j_A           72 IIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-ESKILVVTNPMDVMTYIMWKE-SGKPRNEVFGMGNQLDSQ  149 (294)
T ss_dssp             EEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTST-TCEEEECSSSHHHHHHHHHHH-SSCCTTSEEECCHHHHHH
T ss_pred             EEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEecCcchhhHHhhHHH-cCCChhhEEEeeeEEeHH
Confidence            999999999999999999999999999999999999997 689999999999999999998 7898877 6788999999


Q ss_pred             HHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcCCcc
Q 022227          163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS  242 (300)
Q Consensus       163 R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~t  242 (300)
                      ||++++++++++++.  +.+ ||||||++|||+||++++    +|.+.          .+++.++++++|+||+++||.|
T Consensus       150 R~~~~l~~~~~~~~~--~~~-V~G~HGdt~vp~~S~~~v----~g~~~----------~~~i~~~~~~~g~eIi~~kGst  212 (294)
T 2x0j_A          150 RLKERLYNAGARNIR--RAW-IIGEHGDSMFVAKSLADF----DGEVD----------WEAVENDVRFVAAEVIKRKGAT  212 (294)
T ss_dssp             HHHHHHHHTTCEEEC--CCC-EEBCSSTTCEECGGGCCE----ESCCC----------HHHHHHHHHTHHHHHHHHHSSC
T ss_pred             HHHHHHhhcccCCcc--eeE-EEecCCCcEEEeeeccCC----CCchh----------HHHHHHHHhhhheEEEecCccc
Confidence            999999999987765  345 599999999999999999    67542          2468889999999999999976


Q ss_pred             ccchHHHHHHHHHhhhhcc--------CCCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          243 SALSAASSACDHIRDWVLG--------TPEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       243 ~~~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      + +++|.++++++++++..        ++.+|+||+ +|+|||+||++  ++ |..++
T Consensus       213 ~-~a~a~a~~~~~~ail~d~~~v~~~s~~l~g~yG~-~~v~~s~P~~lg~~G-vei~~  267 (294)
T 2x0j_A          213 I-FGPAVAIYRMVKAVVEDTGEIIPTSMILQGEYGI-ENVAVGVPAKLGKNG-AEVAD  267 (294)
T ss_dssp             C-HHHHHHHHHHHHHHHTTCCCEEEEEEEEESGGGC-EEEEEEEEEEEETTE-EEECC
T ss_pred             c-hhHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCC-ccEEEEEEEEEeCCE-EEEeC
Confidence            5 58999999999987754        344599999 49999999999  45 45443

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=100.00  E-value=5.7e-56  Score=403.58  Aligned_cols=252  Identities=21%  Similarity=0.229  Sum_probs=223.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc--CCcccEEEeCChhhhcCCCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--PLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~--~~~~~v~~~~~~~~a~~~aD   83 (300)
                      |||+|+| +|.+|+++++.|+..++++     +++|+|++  ++++++.++|+.|+..  +...+++.+++ +++++|||
T Consensus         1 MkI~ViG-aG~vG~~la~~l~~~~~~~-----~v~L~D~~--~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aD   71 (294)
T 1oju_A            1 MKLGFVG-AGRVGSTSAFTCLLNLDVD-----EIALVDIA--EDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSE   71 (294)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHSCCS-----EEEEECSS--HHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCCC-----eEEEEECC--hHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCC
Confidence            5999999 5999999999999888765     89999997  4778899999999873  33456776777 89999999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEe-eehhhHH
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC-LTRLDHN  162 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~-~t~ld~~  162 (300)
                      +||+++|.||++|++|.|++.+|+++++++++.|.+++| ++++|++|||+|++|++++++ +++|++|+.| +|.||++
T Consensus        72 iVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~iivvsNPvd~~t~~~~k~-~g~p~~rviG~gt~LD~~  149 (294)
T 1oju_A           72 IIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-ESKILVVTNPMDVMTYIMWKE-SGKPRNEVFGMGNQLDSQ  149 (294)
T ss_dssp             EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTST-TCEEEECSSSHHHHHHHHHHH-SCCCTTSEEECSHHHHHH
T ss_pred             EEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHh-cCCCHHHEeecccccHHH
Confidence            999999999999999999999999999999999999997 799999999999999999998 8999999645 5899999


Q ss_pred             HHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcCCcc
Q 022227          163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS  242 (300)
Q Consensus       163 R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~t  242 (300)
                      |+++++| ++|++|++ +.+ ||||||++|||+||+++|    +|+|          ..++|.++++++|++|+++||.|
T Consensus       150 R~~~~la-~l~v~~~~-~~~-V~G~Hg~t~vp~~s~~~v----~g~~----------~~~~~~~~v~~~g~eii~~kG~t  212 (294)
T 1oju_A          150 RLKERLY-NAGARNIR-RAW-IIGEHGDSMFVAKSLADF----DGEV----------DWEAVENDVRFVAAEVIKRKGAT  212 (294)
T ss_dssp             HHHHHHH-HTTCBSCC-CCC-EEBCSSTTCEECGGGCCC----BSCC----------CHHHHHHHHHTTHHHHHHHHSSC
T ss_pred             HHHHHHH-HhCCCccC-ceE-EEecCCCceeeecccceE----CCcC----------hHHHHHHHHHHHHHHHHHhcCCc
Confidence            9999999 99999999 877 599999999999999999    8888          14689999999999999999965


Q ss_pred             ccchHHHHHHHHHhhhhcc--------CCCccccCCCCCeEEEEeEEEC-Ceee
Q 022227          243 SALSAASSACDHIRDWVLG--------TPEVGSLLIFTPMIYTELVSWL-EPWT  287 (300)
Q Consensus       243 ~~~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~v~~s~Pv~~~-~~~~  287 (300)
                      + +++|.|+++++++|+.+        ++.+|+||++ |+|||+||+++ +-|.
T Consensus       213 ~-~~~a~a~~~~~~ail~~~~~v~~~s~~~~g~yg~~-~~~~s~P~~~g~~Gv~  264 (294)
T 1oju_A          213 I-FGPAVAIYRMVKAVVEDTGEIIPTSMILQGEYGIE-NVAVGVPAKLGKNGAE  264 (294)
T ss_dssp             C-HHHHHHHHHHHHHHHTTCCCEEEEEEEEESGGGCE-EEEEEEEEEEETTEEE
T ss_pred             c-hHHHHHHHHHHHHHHcCCCeEEEEEecccccCCCC-ceEEEEEEEEeCCEEE
Confidence            5 69999999999988754        3445999998 99999999993 4444

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=100.00  E-value=2.4e-56  Score=410.96  Aligned_cols=269  Identities=23%  Similarity=0.342  Sum_probs=229.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC--cccEEEeCChhhhcC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--LKGVVATTDAVEACT   80 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~--~~~v~~~~~~~~a~~   80 (300)
                      |+++||+|+| +|.+|+++++.|+..++ .     +++|+|+++  +++++.++|+.|+..+.  ..++..+++ +++++
T Consensus         5 m~~~kI~viG-aG~vG~~~a~~l~~~~~-~-----~v~L~Di~~--~~~~g~~~dl~~~~~~~~~~~~v~~t~d-~~a~~   74 (324)
T 3gvi_A            5 MARNKIALIG-SGMIGGTLAHLAGLKEL-G-----DVVLFDIAE--GTPQGKGLDIAESSPVDGFDAKFTGAND-YAAIE   74 (324)
T ss_dssp             -CCCEEEEEC-CSHHHHHHHHHHHHTTC-C-----EEEEECSSS--SHHHHHHHHHHHHHHHHTCCCCEEEESS-GGGGT
T ss_pred             CcCCEEEEEC-CCHHHHHHHHHHHhCCC-C-----eEEEEeCCc--hhHHHHHHHHhchhhhcCCCCEEEEeCC-HHHHC
Confidence            4567999999 59999999999998875 2     799999975  67889999999986432  345666666 48999


Q ss_pred             CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeee-hh
Q 022227           81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT-RL  159 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t-~l  159 (300)
                      |||+||+++|.|+++|++|.|++.+|+++++++++.+++++| ++++|++|||+|++|++++++ +++|++|+.|.| .|
T Consensus        75 ~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~iivvtNPvd~~t~~~~k~-sg~p~~rviG~~~~L  152 (324)
T 3gvi_A           75 GADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAP-EAFVICITNPLDAMVWALQKF-SGLPAHKVVGMAGVL  152 (324)
T ss_dssp             TCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCT-TCEEEECCSSHHHHHHHHHHH-HCCCGGGEEECCHHH
T ss_pred             CCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCC-CeEEEecCCCcHHHHHHHHHh-cCCCHHHEEeecCcc
Confidence            999999999999999999999999999999999999999996 799999999999999999998 799999976665 89


Q ss_pred             hHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccc----hhHHHHHHHhHHHHH
Q 022227          160 DHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWL----NGEFITTVQQRGAAI  235 (300)
Q Consensus       160 d~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~----~~~~~~~v~~~~~~i  235 (300)
                      |++|+++++|+++|+++++|+.++ |||||+++||+||+++|    +|+|+.++++ +.|.    .+++.++++++|++|
T Consensus       153 D~~R~~~~la~~lgv~~~~v~~~v-~G~HG~t~~p~~s~~~v----~g~p~~~~~~-~~~~~~~~~~~i~~~v~~~g~eI  226 (324)
T 3gvi_A          153 DSARFRYFLSEEFNVSVEDVTVFV-LGGHGDSMVPLARYSTV----AGIPLPDLVK-MGWTSQDKLDKIIQRTRDGGAEI  226 (324)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEECCE-EECSGGGEEECGGGCEE----TTEEHHHHHH-TTSSCHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHhCcCHHHCeEEE-EcCCCCceeeehhhCeE----CCEEHHHhhh-ccCCCHHHHHHHHHHHHHhHHHH
Confidence            999999999999999999999885 89999999999999999    9999999873 3343    256889999999999


Q ss_pred             HhcCCc-cccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          236 IKARKL-SSALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       236 ~~~kg~-t~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      +++||. +.++++|.|+++++++|+.++        +.+|+||++ |+|||+||++  ++.|.++.
T Consensus       227 i~~~gkgsa~~~~a~a~~~~~~ail~~~~~v~~~s~~~~g~yg~~-~v~~s~P~~~g~~Gv~~v~~  291 (324)
T 3gvi_A          227 VGLLKTGSAFYAPAASAIQMAESYLKDKKRVLPVAAQLSGQYGVK-DMYVGVPTVIGANGVERIIE  291 (324)
T ss_dssp             HHHHSSCCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECC
T ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHHcCCCcEEEEEEEecCccCCC-ceEEEEEEEEeCCEEEEecC
Confidence            997665 334699999999999988654        345999997 9999999999  58888775

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=7.3e-56  Score=407.64  Aligned_cols=271  Identities=19%  Similarity=0.279  Sum_probs=230.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .+||+|+| +|+||+++++.|+..++++     +|+|+|++  ++++++.++|+.|+. ++..++.++.+.+++++|||+
T Consensus         5 ~~KI~IiG-aG~vG~~~a~~l~~~~~~~-----el~L~Di~--~~~~~g~~~dl~~~~-~~~~~~~v~~~~~~a~~~aDv   75 (318)
T 1ez4_A            5 HQKVVLVG-DGAVGSSYAFAMAQQGIAE-----EFVIVDVV--KDRTKGDALDLEDAQ-AFTAPKKIYSGEYSDCKDADL   75 (318)
T ss_dssp             BCEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSS--HHHHHHHHHHHHGGG-GGSCCCEEEECCGGGGTTCSE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHcCCCCC-----EEEEEeCC--chHHHHHHHHHHHHH-HhcCCeEEEECCHHHhCCCCE
Confidence            47999999 5999999999999988765     89999996  578999999999987 444555565677999999999


Q ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-EeeehhhHHH
Q 022227           85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHNR  163 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~ld~~R  163 (300)
                      ||+++|.|+++|++|.|++.+|+++++++++.|++++| ++++|++|||+|++|+++++. +++|++|+ +.+|.||+.|
T Consensus        76 Vii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p-~a~iiv~tNPv~~~t~~~~k~-s~~p~~rviG~gt~LD~~R  153 (318)
T 1ez4_A           76 VVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGF-DGIFLVAANPVDILTYATWKF-SGFPKERVIGSGTSLDSSR  153 (318)
T ss_dssp             EEECCCC----------CHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTHHHHHH
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEeCCcHHHHHHHHHHH-cCCCHHHEEeccccchHHH
Confidence            99999999999999999999999999999999999996 799999999999999999998 69999886 5569999999


Q ss_pred             HHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccc---hhHHHHHHHhHHHHHHhcCC
Q 022227          164 ALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWL---NGEFITTVQQRGAAIIKARK  240 (300)
Q Consensus       164 ~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~---~~~~~~~v~~~~~~i~~~kg  240 (300)
                      +++++|+++|+++++|+.+ ||||||++++|+||++++    +|+|+.+++.+..|.   .+++.++++++|++|++.||
T Consensus       154 ~~~~la~~lgv~~~~v~~~-v~G~HG~t~~p~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg  228 (318)
T 1ez4_A          154 LRVALGKQFNVDPRSVDAY-IMGEHGDSEFAAYSTATI----GTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLKG  228 (318)
T ss_dssp             HHHHHHHHHTCCGGGEECC-EESSSSSSCEECGGGCEE----TTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCcChhHEEEE-EecccCCceEEEehhhcC----CCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhheeCCC
Confidence            9999999999999999976 599999999999999999    999999987654453   36899999999999999999


Q ss_pred             ccccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeeeecc
Q 022227          241 LSSALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIVGHL  293 (300)
Q Consensus       241 ~t~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~~~  293 (300)
                      .+++ ++|.|+++++++|+.+.        +.+|+||+| |+|||+||++  ++.|..++..|
T Consensus       229 ~t~~-~~a~a~~~~~~ai~~~~~~~~~vs~~~~G~yg~~-~~~~~vP~~ig~~Gv~~i~~~~L  289 (318)
T 1ez4_A          229 ATFY-GIGTALMRISKAILRDENAVLPVGAYMDGQYGLN-DIYIGTPAIIGGTGLKQIIESPL  289 (318)
T ss_dssp             CCCH-HHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCCC
T ss_pred             cchH-HHHHHHHHHHHHHHhCCCcEEEEEEeecCccCCC-ceEEEEEEEEeCCeeEEEcCCCC
Confidence            7664 78899999999988653        345999999 9999999999  68888876443

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=1.7e-55  Score=406.37  Aligned_cols=273  Identities=20%  Similarity=0.255  Sum_probs=236.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      ++++||+|+| +|+||+++++.|+..++++     +|+|+|++  ++++++.++||.|+. ++..++.++.+.+++++||
T Consensus         7 ~~~~KI~IiG-aG~vG~~la~~l~~~~~~~-----el~L~Di~--~~~~~g~~~dl~~~~-~~~~~~~i~~~~~~a~~~a   77 (326)
T 2zqz_A            7 KDHQKVILVG-DGAVGSSYAYAMVLQGIAQ-----EIGIVDIF--KDKTKGDAIDLSNAL-PFTSPKKIYSAEYSDAKDA   77 (326)
T ss_dssp             CCCCEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSC--HHHHHHHHHHHHTTG-GGSCCCEEEECCGGGGGGC
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHcCCCCC-----EEEEEeCC--chHhHHHHHHHHHHH-HhcCCeEEEECCHHHhCCC
Confidence            3568999999 5999999999999888765     89999996  578999999999987 4445655656779999999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-EeeehhhH
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDH  161 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~ld~  161 (300)
                      |+||+++|.|+++|++|.|++.+|+++++++++.|++++| ++++|++|||+|++|++++++ +++|++|+ +.+|.||+
T Consensus        78 DvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p-~a~iiv~tNPv~~~t~~~~k~-s~~p~~rviG~gt~LD~  155 (326)
T 2zqz_A           78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGF-NGIFLVAANPVDILTYATWKL-SGFPKNRVVGSGTSLDT  155 (326)
T ss_dssp             SEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTC-CSEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTHHHH
T ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCcHHHHHHHHHHH-cCCCHHHEEEccccchH
Confidence            9999999999999999999999999999999999999996 799999999999999999998 69999886 55699999


Q ss_pred             HHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhc-ccccc---hhHHHHHHHhHHHHHHh
Q 022227          162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVK-DDAWL---NGEFITTVQQRGAAIIK  237 (300)
Q Consensus       162 ~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~-~~~~~---~~~~~~~v~~~~~~i~~  237 (300)
                      .|+++++|+++|+++++|+.+ ||||||++++|+||++++    +|+|+.+++. +..|.   .+++.++++++|++|++
T Consensus       156 ~R~~~~la~~lgv~~~~v~~~-v~G~HG~t~~p~~s~~~v----~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~  230 (326)
T 2zqz_A          156 ARFRQSIAEMVNVDARSVHAY-IMGEHGDTEFPVWSHANI----GGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIK  230 (326)
T ss_dssp             HHHHHHHHHHHTCCGGGEECC-EEBSSSTTCEECGGGCEE----TTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHhCCChhheEEE-EecccCCceEeehhhceE----CCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHH
Confidence            999999999999999999976 599999999999999999    9999999875 33453   35899999999999999


Q ss_pred             cCCccccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeeeecc
Q 022227          238 ARKLSSALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIVGHL  293 (300)
Q Consensus       238 ~kg~t~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~~~  293 (300)
                      .||.+++ ++|.|+++++++|+.+.        +.+|+||+| |+|||+||++  ++.|..++..|
T Consensus       231 ~kG~t~~-~~a~aa~~~~~ai~~~~~~~~~vsv~~~G~yg~~-~~~~svP~~ig~~Gv~~i~~~~L  294 (326)
T 2zqz_A          231 LKGATFY-GIATALARISKAILNDENAVLPLSVYMDGQYGLN-DIYIGTPAVINRNGIQNILEIPL  294 (326)
T ss_dssp             HHSCCCH-HHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCCC
T ss_pred             cCCCcHH-HHHHHHHHHHHHHHhCCCcEEEEEEeccCccCCC-ceEEEEEEEEcCCeeEEEecCCC
Confidence            9997664 78889999999988653        345999999 9999999999  68888876443

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=8.1e-55  Score=400.89  Aligned_cols=275  Identities=23%  Similarity=0.273  Sum_probs=227.3

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      |+++++||+|+| +|+||++++..|+..++++     +|+|+|++  ++++++.++|+.|+. ++..++.++.+.+++++
T Consensus         3 m~~~~~KI~IiG-aG~vG~~~a~~l~~~~~~~-----ev~L~Di~--~~~~~g~~~dl~~~~-~~~~~~~i~~~~~~a~~   73 (318)
T 1y6j_A            3 MVKSRSKVAIIG-AGFVGASAAFTMALRQTAN-----ELVLIDVF--KEKAIGEAMDINHGL-PFMGQMSLYAGDYSDVK   73 (318)
T ss_dssp             ----CCCEEEEC-CSHHHHHHHHHHHHTTCSS-----EEEEECCC-----CCHHHHHHTTSC-CCTTCEEEC--CGGGGT
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHHhCCCCC-----EEEEEeCC--hHHHHHHHHHHHHhH-HhcCCeEEEECCHHHhC
Confidence            434578999999 5999999999999988765     89999997  478899999999987 44455555555689999


Q ss_pred             CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-Eeeehh
Q 022227           81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRL  159 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~l  159 (300)
                      |||+||+++|.|+++|++|.|++.+|+++++++++.+++++| ++++|++|||+|++|++++++ +++|++|+ +.+|.|
T Consensus        74 ~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~~~~~~k~-s~~p~~rviG~gt~L  151 (318)
T 1y6j_A           74 DCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYN-HGVILVVSNPVDIITYMIQKW-SGLPVGKVIGSGTVL  151 (318)
T ss_dssp             TCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCC-SCEEEECSSSHHHHHHHHHHH-HTCCTTTEEECTTHH
T ss_pred             CCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCcHHHHHHHHHHH-cCCCHHHEeccCCch
Confidence            999999999999999999999999999999999999999986 789999999999999999998 68999886 556999


Q ss_pred             hHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhccc--ccc---hhHHHHHHHhHHHH
Q 022227          160 DHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD--AWL---NGEFITTVQQRGAA  234 (300)
Q Consensus       160 d~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~--~~~---~~~~~~~v~~~~~~  234 (300)
                      |+.|+++++|+++|+++++|+.+ ||||||++++|+||++++    +|+|+.+++.+.  .|.   .+++.++++++|++
T Consensus       152 d~~r~~~~la~~lgv~~~~v~~~-v~G~HG~t~~p~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~e  226 (318)
T 1y6j_A          152 DSIRFRYLLSEKLGVDVKNVHGY-IIGEHGDSQLPLWSCTHI----AGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGAT  226 (318)
T ss_dssp             HHHHHHHHHHTTTTCCTTTEECC-EEBCSSSSCEECCTTCEE----TTBCSCCC-----------CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHeEEE-EecccCCcEeeeehhceE----CCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHh
Confidence            99999999999999999999986 599999999999999999    999999886542  233   36899999999999


Q ss_pred             HHhcCCccccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeeeecc
Q 022227          235 IIKARKLSSALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIVGHL  293 (300)
Q Consensus       235 i~~~kg~t~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~~~  293 (300)
                      |++.||.+++ ++|.|+++++++|+.+.        +.+|+||+ +|+|||+||++  +++|..++..|
T Consensus       227 ii~~kg~t~~-~~a~a~~~~~~ai~~~~~~~~~~~~~~~G~yg~-~~~~~~vP~~ig~~Gv~~i~~~~L  293 (318)
T 1y6j_A          227 IIKNKGATYY-GIAVSINTIVETLLKNQNTIRTVGTVINGMYGI-EDVAISLPSIVNSEGVQEVLQFNL  293 (318)
T ss_dssp             HHHHTSCCCH-HHHHHHHHHHHHHHHTCCCEECCEEEECSBTTB-CSEEEECCEEEETTEEEECCCCCC
T ss_pred             HhhCCCccHH-HHHHHHHHHHHHHHcCCCcEEEEEEeecCccCC-cceEEEEEEEEcCCeeEEEecCCC
Confidence            9999997664 78999999999987653        33599999 89999999999  68888877544

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=100.00  E-value=8.6e-55  Score=400.66  Aligned_cols=273  Identities=20%  Similarity=0.252  Sum_probs=239.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc-ccEEEeCChhhhcCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL-KGVVATTDAVEACTG   81 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~-~~v~~~~~~~~a~~~   81 (300)
                      |+++||+|+| +|++|+++++.|+.++++.     +++|+|++  ++++++.++|+.|+. +.. .++.++.+.+++++|
T Consensus         4 m~~~KI~IIG-aG~vG~~la~~l~~~~~~~-----ei~L~Di~--~~~~~g~~~dl~~~~-~~~~~~~~v~~~~~~a~~~   74 (317)
T 3d0o_A            4 FKGNKVVLIG-NGAVGSSYAFSLVNQSIVD-----ELVIIDLD--TEKVRGDVMDLKHAT-PYSPTTVRVKAGEYSDCHD   74 (317)
T ss_dssp             CCCCEEEEEC-CSHHHHHHHHHHHHHCSCS-----EEEEECSC--HHHHHHHHHHHHHHG-GGSSSCCEEEECCGGGGTT
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHhCCCCC-----EEEEEeCC--hhHhhhhhhhHHhhh-hhcCCCeEEEeCCHHHhCC
Confidence            5678999999 5999999999999887754     89999996  478899999999974 433 454555567899999


Q ss_pred             CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-Eeeehhh
Q 022227           82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLD  160 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~ld  160 (300)
                      ||+||+++|.|+++|++|.+++.+|+++++++++.|++++| ++++|++|||+|++|++++++ +++|++|+ +.+|.||
T Consensus        75 aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~k~-~~~p~~rviG~gt~lD  152 (317)
T 3d0o_A           75 ADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKF-DGIFLVATNPVDILAYATWKF-SGLPKERVIGSGTILD  152 (317)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTHHH
T ss_pred             CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCcHHHHHHHHHHH-hCCCHHHEEecCcccc
Confidence            99999999999999999999999999999999999999996 789999999999999999998 68999886 5569999


Q ss_pred             HHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccc---hhHHHHHHHhHHHHHHh
Q 022227          161 HNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWL---NGEFITTVQQRGAAIIK  237 (300)
Q Consensus       161 ~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~---~~~~~~~v~~~~~~i~~  237 (300)
                      +.|+++++|+++|+++++|+.+ ||||||++++|+||++++    +|+|+.+++.+..|.   .+++.++++++|++|++
T Consensus       153 ~~r~~~~la~~l~v~~~~v~~~-v~G~HG~t~~p~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~  227 (317)
T 3d0o_A          153 SARFRLLLSEAFDVAPRSVDAQ-IIGEHGDTELPVWSHANI----AGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQ  227 (317)
T ss_dssp             HHHHHHHHHHHHTSCGGGCBCC-EEBCSSTTCEECTTTCEE----TTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHhCcChhhEEEE-EEecCCCCeeEeeecccc----CCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEe
Confidence            9999999999999999999976 599999999999999999    999999987654452   36899999999999999


Q ss_pred             cCCccccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeeeecc
Q 022227          238 ARKLSSALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIVGHL  293 (300)
Q Consensus       238 ~kg~t~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~~~  293 (300)
                      .||.+++ ++|.|+++++++|+.+.        +.+|+||+| |+|||+||++  ++.|..++..|
T Consensus       228 ~kg~~~~-~~a~a~~~~~~ai~~~~~~~~~~~~~~~g~~g~~-~~~~~vP~~ig~~Gv~~i~~~~l  291 (317)
T 3d0o_A          228 AKGATYY-GVAMGLARITEAIFRNEDAVLTVSALLEGEYEEE-DVYIGVPAVINRNGIRNVVEIPL  291 (317)
T ss_dssp             HHSCCCH-HHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCCC
T ss_pred             CCCCchH-hHHHHHHHHHHHHHcCCCcEEEEEEeecCccCCC-ceEEEEEEEEeCCeeEEEecCCC
Confidence            9997664 78899999999988653        345999999 9999999999  68888876443

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=100.00  E-value=1.2e-54  Score=398.28  Aligned_cols=270  Identities=16%  Similarity=0.198  Sum_probs=237.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||+|+| +|+||+++++.|+..++++     +|+|+|++  ++++++.++||.|+. ++..++.++.+.+++++|||+|
T Consensus         1 ~KI~IiG-aG~vG~~~a~~l~~~~~~~-----el~L~Di~--~~k~~g~a~dl~~~~-~~~~~~~v~~~~~~a~~~aD~V   71 (310)
T 2xxj_A            1 MKVGIVG-SGMVGSATAYALALLGVAR-----EVVLVDLD--RKLAQAHAEDILHAT-PFAHPVWVWAGSYGDLEGARAV   71 (310)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCCS-----EEEEECSS--HHHHHHHHHHHHTTG-GGSCCCEEEECCGGGGTTEEEE
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCCC-----EEEEEeCC--hhHHHHHHHHHHHhH-hhcCCeEEEECCHHHhCCCCEE
Confidence            5999999 5999999999999988765     89999997  578999999999986 3334444444568999999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-EeeehhhHHHH
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHNRA  164 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~ld~~R~  164 (300)
                      |+++|.|+++|++|.|++.+|+++++++++.|++++| ++++|++|||+|++|+++++. +++|++|+ +.+|.||+.|+
T Consensus        72 ii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~iiv~tNPv~~~t~~~~k~-s~~p~~rviG~gt~LD~~R~  149 (310)
T 2xxj_A           72 VLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAP-EAVLLVATNPVDVMTQVAYAL-SGLPPGRVVGSGTILDTARF  149 (310)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHHHHHHHHH-HTCCGGGEEECTTHHHHHHH
T ss_pred             EECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEecCchHHHHHHHHHH-cCCCHHHEEecCcchhHHHH
Confidence            9999999999999999999999999999999999997 799999999999999999998 68999886 55699999999


Q ss_pred             HHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccc--c---chhHHHHHHHhHHHHHHhcC
Q 022227          165 LGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA--W---LNGEFITTVQQRGAAIIKAR  239 (300)
Q Consensus       165 ~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~--~---~~~~~~~~v~~~~~~i~~~k  239 (300)
                      ++++|+++|+++++|+.+ ||||||++++|+||++++    +|+|+.+++.+..  |   ..+++.++++++|++|++.|
T Consensus       150 ~~~la~~lgv~~~~v~~~-v~G~HG~t~~p~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k  224 (310)
T 2xxj_A          150 RALLAEYLRVAPQSVHAY-VLGEHGDSEVLVWSSAQV----GGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK  224 (310)
T ss_dssp             HHHHHHHHTSCGGGEEEE-EEBCSSTTCEEEEEEEEE----TTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHhCcCHHHeEEE-EecccCCccccchhhccC----CCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHhcc
Confidence            999999999999999986 599999999999999999    9999999875432  4   24689999999999999999


Q ss_pred             CccccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeeeecc
Q 022227          240 KLSSALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIVGHL  293 (300)
Q Consensus       240 g~t~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~~~  293 (300)
                      |.+++ ++|.|+++++++|+.+.        +.+|+||+ +|+|||+||++  ++.|..++..|
T Consensus       225 g~t~~-~~a~a~~~~~~ai~~~~~~~~~vs~~~~G~yg~-~~~~~~vP~~ig~~Gv~~i~~~~L  286 (310)
T 2xxj_A          225 GATYY-GIGAGLARLVRAILTDEKGVYTVSAFTPEVAGV-LEVSLSLPRILGAGGVAGTVYPSL  286 (310)
T ss_dssp             SCCCH-HHHHHHHHHHHHHHTTCCEEEEEEEEEEEETTE-EEEEEEEEEEEETTEEEEECCCCC
T ss_pred             CCcHH-HHHHHHHHHHHHHHcCCCCEEEEEEEEcCccCC-ccEEEEEEEEEeCCeeEEEcCCCC
Confidence            97664 78999999999988653        34599999 89999999999  68888776543

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=100.00  E-value=2.6e-54  Score=395.13  Aligned_cols=268  Identities=21%  Similarity=0.248  Sum_probs=235.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+||||+|++|+++++.|+.++++.     +++|+|++++++++++.++|+.|... +..++.++.+.+++++|||+|
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~-----el~L~Di~~~~~~~~~~~~dl~~~~~-~~~~~~v~~~~~~a~~~aDvV   74 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIAD-----EVVFVDIPDKEDDTVGQAADTNHGIA-YDSNTRVRQGGYEDTAGSDVV   74 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCS-----EEEEECCGGGHHHHHHHHHHHHHHHT-TTCCCEEEECCGGGGTTCSEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCC-----EEEEEcCCCChhhHHHHHHHHHHHHh-hCCCcEEEeCCHHHhCCCCEE
Confidence            599999999999999999999877643     89999993335678888999999875 444444444458999999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEee-ehhhHHHH
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHNRA  164 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~-t~ld~~R~  164 (300)
                      |++||.+++++++|.+++.+|+++++++++++++++| +++++++|||+|++|+++++. +++|++|+.|. |.||+.|+
T Consensus        75 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~~~viv~SNPv~~~~~~~~~~-~~~p~~rviG~gt~Ld~~r~  152 (303)
T 1o6z_A           75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYISLTTSNPVDLLNRHLYEA-GDRSREQVIGFGGRLDSARF  152 (303)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCS-CCEEEECCSSHHHHHHHHHHH-SSSCGGGEEECCHHHHHHHH
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHH-cCCCHHHeeecccchhHHHH
Confidence            9999999999999999999999999999999999997 789999999999999999998 69999997555 99999999


Q ss_pred             HHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcCCcccc
Q 022227          165 LGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSA  244 (300)
Q Consensus       165 ~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~t~~  244 (300)
                      ++++|+++|+++++|+.+ ||||||++++|+||++++    +|+|  +++.++.|  +++.++++++|++|++.||.+++
T Consensus       153 ~~~la~~l~v~~~~v~~~-v~G~HG~~~~p~~s~~~v----~g~p--~~~~~~~~--~~~~~~v~~~g~eii~~kg~~~~  223 (303)
T 1o6z_A          153 RYVLSEEFDAPVQNVEGT-ILGEHGDAQVPVFSKVSV----DGTD--PEFSGDEK--EQLLGDLQESAMDVIERKGATEW  223 (303)
T ss_dssp             HHHHHHHHTCCGGGEECC-EEECSSTTEEECGGGCEE----TTBC--CCCCHHHH--HHHHHHHHHHHHHHHTTTSSCCH
T ss_pred             HHHHHHHhCcCHHHeEEE-EEeCCCCccccCCccccc----CCcC--ccCCHHHH--HHHHHHHHHHhHHHHhcCCChHH
Confidence            999999999999999976 599999999999999999    9999  77655554  68999999999999999997665


Q ss_pred             chHHHHHHHHHhhhhccCC--------CccccCCCCCeEEEEeEEE--CCeeeeeeec
Q 022227          245 LSAASSACDHIRDWVLGTP--------EVGSLLIFTPMIYTELVSW--LEPWTAIVGH  292 (300)
Q Consensus       245 ~s~a~ai~~~~~~~~~~t~--------~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~~  292 (300)
                       ++|.|+++++++|+.++.        .+|+||+ +|+|||+||++  ++.|..++..
T Consensus       224 -~~a~a~~~~~~ai~~~~~~~~~~~~~~~g~~g~-~~~~~~~P~~ig~~Gv~~i~~~~  279 (303)
T 1o6z_A          224 -GPARGVAHMVEAILHDTGEVLPASVKLEGEFGH-EDTAFGVPVSLGSNGVEEIVEWD  279 (303)
T ss_dssp             -HHHHHHHHHHHHHHTTCCCEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCC
T ss_pred             -HHHHHHHHHHHHHHhCCCCEEEEEEecCCccCC-cceEEEEEEEEeCCeeEEecCCC
Confidence             899999999999886543        3499999 79999999999  6888887643

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=100.00  E-value=1.1e-54  Score=398.31  Aligned_cols=267  Identities=21%  Similarity=0.286  Sum_probs=237.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC--cccEEEeCChhhhcCCCcE
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--LKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~--~~~v~~~~~~~~a~~~aDv   84 (300)
                      ||+|+| +|++|+++++.|+..++ +     +|+|+|+++  +++++.++|+.|+.++.  ..+++.+++ +++++|||+
T Consensus         1 KI~IiG-aG~vG~~~a~~l~~~~l-~-----el~L~Di~~--~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aD~   70 (308)
T 2d4a_B            1 MITILG-AGKVGMATAVMLMMRGY-D-----DLLLIARTP--GKPQGEALDLAHAAAELGVDIRISGSNS-YEDMRGSDI   70 (308)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHHTC-S-----CEEEECSST--THHHHHHHHHHHHHHHHTCCCCEEEESC-GGGGTTCSE
T ss_pred             CEEEEC-cCHHHHHHHHHHHhCCC-C-----EEEEEcCCh--hhHHHHHHHHHHhhhhcCCCeEEEECCC-HHHhCCCCE
Confidence            799999 59999999999998876 5     799999974  78899999999976432  345666666 589999999


Q ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEee-ehhhHHH
Q 022227           85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHNR  163 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~-t~ld~~R  163 (300)
                      ||+++|.|+++|++|.|++.+|+++++++++.+++++| ++++|++|||+|.+|++++++ +++|++|+.|. |.||+.|
T Consensus        71 Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~iiv~tNPv~~~t~~~~k~-~~~p~~rviG~gt~LD~~R  148 (308)
T 2d4a_B           71 VLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAK-DAIVVITTNPVDAMTYVMYKK-TGFPRERVIGFSGILDSAR  148 (308)
T ss_dssp             EEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECCSSHHHHHHHHHHH-HCCCGGGEEECCHHHHHHH
T ss_pred             EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHh-cCCChhhEEEecccchHHH
Confidence            99999999999999999999999999999999999996 799999999999999999998 79999997565 9999999


Q ss_pred             HHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcCCccc
Q 022227          164 ALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS  243 (300)
Q Consensus       164 ~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~t~  243 (300)
                      +++++|+++|+++++|+.+ ||||||++++|+||++++    +|+|+.+++.++.|  +++.++++++|++|++.||.++
T Consensus       149 ~~~~la~~lgv~~~~v~~~-v~G~Hg~t~~p~~s~~~v----~g~~~~~~~~~~~~--~~~~~~v~~~g~eii~~kg~s~  221 (308)
T 2d4a_B          149 MAYYISQKLGVSFKSVNAI-VLGMHGQKMFPVPRLSSV----GGVPLEHLMSKEEI--EEVVSETVNAGAKITELRGYSS  221 (308)
T ss_dssp             HHHHHHHHHTSCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHSCHHHH--HHHHHHHHTHHHHHHHHHSSCC
T ss_pred             HHHHHHHHhCcChhHeEEE-EEeccCCceeeeehhccC----CCEEHHHHcCHHHH--HHHHHHHHHhhHhhhhCCCCcc
Confidence            9999999999999999988 599999999999999999    99999998866554  6899999999999999999555


Q ss_pred             cchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeeeecc
Q 022227          244 ALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIVGHL  293 (300)
Q Consensus       244 ~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~~~  293 (300)
                      ++++|.|+++++++|+.++        +.+|+||+ +|+|||+||++  ++.|..++..|
T Consensus       222 ~~~~a~a~~~~~~ai~~~~~~v~~vs~~~~G~yg~-~~~~~~vP~~ig~~Gv~~i~~~~L  280 (308)
T 2d4a_B          222 NYGPAAGLVLTVEAIKRDSKRIYPYSLYLQGEYGY-NDIVAEVPAVIGKSGIERIIELPL  280 (308)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCC
T ss_pred             HHHHHHHHHHHHHHHHhCCCcEEEEEEEEcCccCC-CceEEEEEEEEcCCceEEecCCCC
Confidence            5699999999999988654        34599999 89999999999  68888776443

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=100.00  E-value=4.2e-53  Score=389.32  Aligned_cols=276  Identities=20%  Similarity=0.226  Sum_probs=239.8

Q ss_pred             CCC-CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc
Q 022227            1 MAK-EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC   79 (300)
Q Consensus         1 m~~-~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~   79 (300)
                      |++ +++||+|+| +|.+|+++++.|+..++++     +|+|+|++  ++++++.++|+.|.......++.++++.++++
T Consensus         1 m~~~~~~kI~IIG-aG~vG~sla~~l~~~~~~~-----ev~l~Di~--~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al   72 (316)
T 1ldn_A            1 MKNNGGARVVVIG-AGFVGASYVFALMNQGIAD-----EIVLIDAN--ESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDC   72 (316)
T ss_dssp             CTTTTSCEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSS--HHHHHHHHHHHHHHTTSSSSCCEEEECCGGGT
T ss_pred             CCCCCCCEEEEEC-cCHHHHHHHHHHHhCCCCC-----EEEEEeCC--cchHHHHHhhHHHHhhhcCCCeEEEcCcHHHh
Confidence            665 557999999 5999999999999887755     89999997  46888889999997532323444545678999


Q ss_pred             CCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-Eeeeh
Q 022227           80 TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTR  158 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~  158 (300)
                      +|||+||++++.++++|++|.|++.+|+++++++++.+++++| +++++++|||+|.+|++++++ +++|++|+ +.+|.
T Consensus        73 ~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~~iv~tNPv~~~~~~~~~~-s~~p~~rviG~gt~  150 (316)
T 1ldn_A           73 RDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGF-QGLFLVATNPVDILTYATWKF-SGLPHERVIGSGTI  150 (316)
T ss_dssp             TTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTC-CSEEEECSSSHHHHHHHHHHH-HTCCGGGEEECTTH
T ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCC-CCEEEEeCCchHHHHHHHHHH-hCCCHHHEEecccc
Confidence            9999999999999999999999999999999999999999996 789999999999999999998 68999887 55599


Q ss_pred             hhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccc-cc---hhHHHHHHHhHHHH
Q 022227          159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA-WL---NGEFITTVQQRGAA  234 (300)
Q Consensus       159 ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~-~~---~~~~~~~v~~~~~~  234 (300)
                      ||+.|+++++|+++|+++++|+.+ ||||||++++|+||++++    +|+|+.+++.+.. |.   .+++.++++++|++
T Consensus       151 lD~~r~~~~la~~l~v~~~~v~~~-v~G~HG~~~~p~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~e  225 (316)
T 1ldn_A          151 LDTARFRFLLGEYFSVAPQNVHAY-IIGEHGDTELPVWSQAYI----GVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQ  225 (316)
T ss_dssp             HHHHHHHHHHHHHHTSCGGGEEEE-EEBCSSTTCEEEEEEEEE----TTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCHHHeEEE-EecccCCceeeeehhccC----CCEEHHHHhhccccCCHHHHHHHHHHHHHhHHH
Confidence            999999999999999999999986 599999999999999999    9999999876543 33   26899999999999


Q ss_pred             HHhcCCccccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeeeecc
Q 022227          235 IIKARKLSSALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIVGHL  293 (300)
Q Consensus       235 i~~~kg~t~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~~~  293 (300)
                      |++.||.+++ ++|.|+++++++|+.+.        +.+|+||+ +|+|||+||++  +++|..++..|
T Consensus       226 ii~~kg~~~~-~~a~a~~~~~~ai~~~~~~~~~~~~~~~g~yg~-~~~~~~vP~~ig~~Gv~~i~~~~l  292 (316)
T 1ldn_A          226 IIEKKGATYY-GIAMGLARVTRAILHNENAILTVSAYLDGLYGE-RDVYIGVPAVINRNGIREVIEIEL  292 (316)
T ss_dssp             HHHHHSCCCH-HHHHHHHHHHHHHHTTCCEEEEEEEEEESTTSC-EEEEEEEEEEEETTEEEEECCCCC
T ss_pred             HHhccCCcHH-HHHHHHHHHHHHHHhCCCcEEEEEEEecCccCC-cceEEEEEEEEeCCeeEEEccCCC
Confidence            9999997765 78889999999988654        34599999 89999999999  68888876443

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=100.00  E-value=4.4e-53  Score=387.37  Aligned_cols=261  Identities=21%  Similarity=0.284  Sum_probs=220.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEE--eCChhhhcCCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA--TTDAVEACTGV   82 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~-~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~--~~~~~~a~~~a   82 (300)
                      |||+|+||+|+||+++++.|.++ ++..     +|+|+|+++   +++|.++||+|...  ..+++.  +++.+++++||
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~-----el~L~Di~~---~~~G~a~Dl~~~~~--~~~v~~~~~~~~~~~~~~a   70 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGS-----ELSLYDIAP---VTPGVAVDLSHIPT--AVKIKGFSGEDATPALEGA   70 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTE-----EEEEECSST---THHHHHHHHHTSCS--SEEEEEECSSCCHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCc-----eEEEEecCC---CchhHHHHhhCCCC--CceEEEecCCCcHHHhCCC
Confidence            59999999999999999999876 5433     899999974   57799999999742  223433  24678999999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH---HHHHCCCC-CCCcEEeeeh
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI---LKEFAPSI-PAKNITCLTR  158 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~---~~~~~~~~-p~~~i~~~t~  158 (300)
                      |+||++||.||+|||+|.||+.+|+++++++++.+.++|| +++++++|||+|++|++   +++. +++ |++|+.|.|.
T Consensus        71 Divii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p-~a~vlvvtNPvd~~t~~a~~~~k~-sg~~p~~rv~G~~~  148 (312)
T 3hhp_A           71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCP-KACIGIITNPVNTTVAIAAEVLKK-AGVYDKNKLFGVTT  148 (312)
T ss_dssp             SEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TSEEEECSSCHHHHHHHHHHHHHH-TTCCCTTSEEECCH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEecCcchhHHHHHHHHHHH-cCCCCcceEEEEec
Confidence            9999999999999999999999999999999999999997 78999999999999999   7777 576 9999888889


Q ss_pred             hhHHHHHHHHHHHcCCCCCCeEEEEEecCC-CCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHh
Q 022227          159 LDHNRALGQISEKLNVQVSDVKNVIIWGNH-SSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK  237 (300)
Q Consensus       159 ld~~R~~~~la~~l~v~~~~V~~~~V~G~h-g~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~  237 (300)
                      ||++|+++++|+++|+++++|+.+ ||||| |++|||+||++      +|.|+.    +++|  ++|.++||++|++|++
T Consensus       149 LD~~R~~~~la~~lgv~~~~v~~~-V~G~Hsg~t~vp~~S~~------~g~~~~----~~~~--~~i~~~v~~~g~eIi~  215 (312)
T 3hhp_A          149 LDIIRSNTFVAELKGKQPGEVEVP-VIGGHSGVTILPLLSQV------PGVSFT----EQEV--ADLTKRIQNAGTEVVE  215 (312)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGCCCC-EEECSSGGGEEECGGGC------TTCCCC----HHHH--HHHHHHHHTHHHHHHH
T ss_pred             hhHHHHHHHHHHHhCcChhHccee-EEeccCCCceeeecccC------CCCCCC----HHHH--HHHHHHHHhhhHHHHh
Confidence            999999999999999999999977 59999 78999999997      356642    3344  6899999999999999


Q ss_pred             cC--CccccchHHHHHHHHHhhh---hccCC-------CccccCCCCCeEEEEeEEE--CCeeeeeee-cc
Q 022227          238 AR--KLSSALSAASSACDHIRDW---VLGTP-------EVGSLLIFTPMIYTELVSW--LEPWTAIVG-HL  293 (300)
Q Consensus       238 ~k--g~t~~~s~a~ai~~~~~~~---~~~t~-------~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~-~~  293 (300)
                      +|  +.++++|+|.|+++++++|   +.+..       ..|+ | ++++|||+||++  ++.|.+++. .|
T Consensus       216 ~k~g~gst~~s~a~a~~~~~~ai~~~l~~~~~v~~~s~~~g~-g-~~~v~~s~P~~~g~~Gv~~v~~~~~L  284 (312)
T 3hhp_A          216 AKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGD-G-QYARFFSQPLLLGKNGVEERKSIGTL  284 (312)
T ss_dssp             HTTTSCCCCHHHHHHHHHHHHHHHHHHTTCSSCEEEEEEECC-C-SSCSEEEEEEEEETTEEEEECCCCCC
T ss_pred             hccCCCCchhHHHHHHHHHHHHHHHHcCCCCceEEEEEecCC-C-CcceEEEeEEEEeCCEEEEEcCCCCC
Confidence            88  2356679999999999887   44432       2344 4 457899999999  689998875 44

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=100.00  E-value=1.9e-54  Score=397.76  Aligned_cols=256  Identities=18%  Similarity=0.210  Sum_probs=224.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc-cCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~-~~~~~~v~~~~~~~~a~~~a   82 (300)
                      +.+||+|+| +|.||+++++.|+..++++     +++|+|++  ++++++.++||+|+. ++...++..++++ ++++||
T Consensus        20 ~~~kV~ViG-aG~vG~~~a~~la~~g~~~-----ev~L~Di~--~~~~~g~a~DL~~~~~~~~~~~i~~t~d~-~~~~da   90 (330)
T 3ldh_A           20 SYNKITVVG-CDAVGMADAISVLMKDLAD-----EVALVDVM--EDKLKGEMMDLEHGSLFLHTAKIVSGKDY-SVSAGS   90 (330)
T ss_dssp             CCCEEEEES-TTHHHHHHHHHHHHHCCCS-----EEEEECSC--HHHHHHHHHHHHHHGGGSCCSEEEEESSS-CSCSSC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCCC-----eEEEEECC--HHHHHHHHHHhhhhhhcccCCeEEEcCCH-HHhCCC
Confidence            357999999 5999999999999998876     89999996  578999999999974 3445566666664 679999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-EeeehhhH
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDH  161 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~ld~  161 (300)
                      |+||++||.||+|||+|.|++.+|+++++++++.+++++| +++++++|||+|++|++++++ +++|++|+ +.+|.||+
T Consensus        91 DiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P-~a~ilvvtNPvdi~t~~~~k~-sg~p~~rViG~gt~LDs  168 (330)
T 3ldh_A           91 KLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSP-DCLKELHPELGTDKNKQDWKL-SGLPMHRIIGSGCNLDS  168 (330)
T ss_dssp             SEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHHHHHHHHH-HCCCGGGEECCTTHHHH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CceEEeCCCccHHHHHHHHHH-hCCCHHHeecccCchhH
Confidence            9999999999999999999999999999999999999987 799999999999999999998 69999995 66699999


Q ss_pred             HHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcCCc
Q 022227          162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKL  241 (300)
Q Consensus       162 ~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~  241 (300)
                      +|+++++|+++|+++++|+++ ||||||++|+|+||+                   +| .+++.++++++|++|+++||+
T Consensus       169 ~R~~~~lA~~lgv~~~~V~~~-V~G~Hg~t~vp~~S~-------------------~~-~~~~~~~v~~~g~eii~~kg~  227 (330)
T 3ldh_A          169 ARFRYLMGERLGVHSCLVIGW-VIGQHGDSVPSVWSG-------------------MW-DAKLHKDVVDSAYEVIKLKGY  227 (330)
T ss_dssp             HHHHHHHHHHHTSCTTTCCEE-ECSSSSTTCCEEEEE-------------------EE-ETTEEHHHHHCCCTTSTTCHH
T ss_pred             HHHHHHHHHHhCCCHHHeEEE-EEcCCCCceeeechh-------------------hH-HHHHHHHHHHHHHHHHHccCC
Confidence            999999999999999999998 599999999999998                   12 246888999999999999997


Q ss_pred             cccchHHH-----------------HHHHHHhhhh--------ccCCCccccCCCCCeEEEEeEEE-CCeee--eeeec
Q 022227          242 SSALSAAS-----------------SACDHIRDWV--------LGTPEVGSLLIFTPMIYTELVSW-LEPWT--AIVGH  292 (300)
Q Consensus       242 t~~~s~a~-----------------ai~~~~~~~~--------~~t~~~g~ygi~~~v~~s~Pv~~-~~~~~--~~~~~  292 (300)
                      |++ ++|.                 ++++++++++        .+++.+|+||+++|+|||+||++ ++.|.  +++-.
T Consensus       228 t~~-a~a~~~~~~~~~~~~~~~~~~a~~~~~~ail~~~~~v~~~s~~~~g~yg~~~~v~~s~P~~lg~Gv~~~~iv~~~  305 (330)
T 3ldh_A          228 TSW-AIGLVVSNPVDVLTYVAWKGCSVADLAQTIMKDLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNNGISHCNIVKMK  305 (330)
T ss_dssp             HHH-HHHHTTHHHHTTSSSCSCTHHHHHHHHHHHHHTCCEEECCBCCCSSSSSCCSCCCCBCCEEEBTTBCTTCCCCCC
T ss_pred             cce-eeeeeccCccchhhhhhhHHHHHHHHHHHHHcCCCceEEEEeecCCccCCCCceEEEEEEEECCcEEEcceecCC
Confidence            765 7777                 7877776654        35667799999999999999999 68888  77643

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=100.00  E-value=3.9e-53  Score=389.09  Aligned_cols=270  Identities=21%  Similarity=0.318  Sum_probs=229.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcc--cEEEeC-ChhhhcCCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLK--GVVATT-DAVEACTGV   82 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~--~v~~~~-~~~~a~~~a   82 (300)
                      |||+||||+|++|+++++.|+.++++.     +++|+|++++++++++.++|+.|+......  ++..++ +++++++||
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~-----el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~ga   75 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMK-----DLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDES   75 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCC-----EEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTC
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCC-----EEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCC
Confidence            599999988999999999999877643     899999944356788999999997622212  444333 258999999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEee-ehhhH
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDH  161 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~-t~ld~  161 (300)
                      |+||++||.+++++++|.+++.+|+++++++++++++++  +++++++|||+|++|+++++. +++|++|+.|. |.||+
T Consensus        76 D~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv~SNPv~~~t~~~~k~-~~~p~~rviG~gt~LD~  152 (313)
T 1hye_A           76 DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFVITNPVDVMTYKALVD-SKFERNQVFGLGTHLDS  152 (313)
T ss_dssp             SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECSSSHHHHHHHHHHH-HCCCTTSEEECTTHHHH
T ss_pred             CEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecCcHHHHHHHHHHh-hCcChhcEEEeCccHHH
Confidence            999999999999999999999999999999999999998  579999999999999999998 79999997665 99999


Q ss_pred             HHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhh--cccccchhHHHHHHHhHHHHHHhcC
Q 022227          162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV--KDDAWLNGEFITTVQQRGAAIIKAR  239 (300)
Q Consensus       162 ~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~--~~~~~~~~~~~~~v~~~~~~i~~~k  239 (300)
                      .|+++++|+++|+++++|+.++ |||||++++|+||++++    +|+|+.+++  .++.  .+++.++++++|++|++.|
T Consensus       153 ~r~~~~la~~lgv~~~~v~~~v-~G~Hg~~~~p~~s~~~v----~g~~~~~~~~~~~~~--~~~~~~~v~~~g~eii~~k  225 (313)
T 1hye_A          153 LRFKVAIAKFFGVHIDEVRTRI-IGEHGDSMVPLLSATSI----GGIPIQKFERFKELP--IDEIIEDVKTKGEQIIRLK  225 (313)
T ss_dssp             HHHHHHHHHHHTCCGGGEECCE-EECSSTTEEECGGGCEE----TTEEGGGCGGGGGCC--HHHHHHHHHHHTTSCCC--
T ss_pred             HHHHHHHHHHhCcCHHHeEEEE-eeccCCcccceeecccc----CCEEHHHHhcCCHHH--HHHHHHHHHhccceeecCC
Confidence            9999999999999999999875 99999999999999999    999999874  4433  4689999999999999999


Q ss_pred             CccccchHHHHHHHHHhhhhccCC--------Ccccc-CCCCCeEEEEeEEE--CCeeeeeeec
Q 022227          240 KLSSALSAASSACDHIRDWVLGTP--------EVGSL-LIFTPMIYTELVSW--LEPWTAIVGH  292 (300)
Q Consensus       240 g~t~~~s~a~ai~~~~~~~~~~t~--------~~g~y-gi~~~v~~s~Pv~~--~~~~~~~~~~  292 (300)
                      | ++++++|.|+++++++|+.++.        .+|+| |+ +|+|||+||++  ++.|..++..
T Consensus       226 g-s~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~g~~~g~-~~~~~~~P~~ig~~Gv~~i~~~~  287 (313)
T 1hye_A          226 G-GSEFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGI-RDVCIGVPVKIGRDGIEEVVSIE  287 (313)
T ss_dssp             -----CCHHHHHHHHHHHHHTTCCEEEEEEEEEESSSSSC-EEEEEEEEEEEETTEEEEECCCC
T ss_pred             C-CcHHHHHHHHHHHHHHHHcCCCeEEEEEEeecceecCc-cceEEEEEEEEeCCeeEEecCCC
Confidence            9 4556999999999999886543        34999 99 79999999999  6888877643

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=100.00  E-value=7.7e-52  Score=379.79  Aligned_cols=267  Identities=20%  Similarity=0.277  Sum_probs=227.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC--cccEEEeCChhhhcCCCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--LKGVVATTDAVEACTGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~--~~~v~~~~~~~~a~~~aD   83 (300)
                      +||+|+| +|++|++++..|+..+++      +++|+|+++  +++++.++|+.++..+.  ..+++.+++. ++++|||
T Consensus         3 ~kI~VIG-aG~vG~~~a~~la~~g~~------~v~L~Di~~--~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD   72 (309)
T 1ur5_A            3 KKISIIG-AGFVGSTTAHWLAAKELG------DIVLLDIVE--GVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSD   72 (309)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCS------EEEEECSSS--SHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCCC------eEEEEeCCc--cHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCC
Confidence            6999999 599999999999988753      599999974  67888899999875332  3456666775 8999999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEee-ehhhHH
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHN  162 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~-t~ld~~  162 (300)
                      +||+++|.|+++|++|.|++.+|+++++++++.+++++| ++++|++|||+|.+|+++++. +++|++|+.|. |.||+.
T Consensus        73 ~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~vi~~tNPv~~~t~~~~~~-~~~~~~rviG~gt~LD~~  150 (309)
T 1ur5_A           73 VIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSP-NAVIIMVNNPLDAMTYLAAEV-SGFPKERVIGQAGVLDAA  150 (309)
T ss_dssp             EEEECCCC--------CHHHHHHHHHHHHHHHHHGGGCT-TCEEEECCSSHHHHHHHHHHH-HCCCGGGEEECCHHHHHH
T ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEcCCchHHHHHHHHHH-cCCCHHHEEECCcchHHH
Confidence            999999999999999999999999999999999999996 789999999999999999998 79999997565 999999


Q ss_pred             HHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHh--cCC
Q 022227          163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK--ARK  240 (300)
Q Consensus       163 R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~--~kg  240 (300)
                      |+++++|+++|+++++|+.+ ||||||++++|+||++++    +|+|+.+++.++.|  +++.++++++|++|++  .||
T Consensus       151 r~~~~la~~lgv~~~~v~~~-v~G~Hg~t~~p~~s~~~v----~g~~~~~~~~~~~~--~~~~~~v~~~g~eii~~~~kg  223 (309)
T 1ur5_A          151 RYRTFIAMEAGVSVEDVQAM-LMGGHGDEMVPLPRFSCI----SGIPVSEFIAPDRL--AQIVERTRKGGGEIVNLLKTG  223 (309)
T ss_dssp             HHHHHHHHHHTCCGGGEEEC-CEECSGGGEECCGGGEEE----TTEEGGGTSCHHHH--HHHHHHHHTHHHHHHHHHSSC
T ss_pred             HHHHHHHHHhCCChhheeEE-EecCcCCceeeeeeccee----CCEeHHHHcCHhHH--HHHHHHHHhhhHHhhhhccCC
Confidence            99999999999999999986 599999999999999999    99999998766553  6899999999999999  687


Q ss_pred             ccccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeeeecc
Q 022227          241 LSSALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIVGHL  293 (300)
Q Consensus       241 ~t~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~~~  293 (300)
                       ++++++|.|+++++++|+.++        +.+|+||+ +|+|||+||++  ++.|..++..|
T Consensus       224 -s~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~g~~g~-~~~~~~vP~~ig~~Gv~~i~~~~l  284 (309)
T 1ur5_A          224 -SAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQYGL-NDIYFGVPVILGAGGVEKILELPL  284 (309)
T ss_dssp             -CCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCC
T ss_pred             -CcHHHHHHHHHHHHHHHHcCCCcEEEEEEEecCccCC-cceEEEEEEEEeCCceEEecCCCC
Confidence             555699999999999988654        34599999 89999999999  68888776433

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=100.00  E-value=1.4e-50  Score=373.22  Aligned_cols=269  Identities=19%  Similarity=0.264  Sum_probs=235.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC--CcccEEEeCChhhhcCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~--~~~~v~~~~~~~~a~~~   81 (300)
                      +++||+|+| +|++|+.++..|+..+++      +|+|+|+++  +++++.++|+.+...+  ...+++.+++. ++++|
T Consensus         3 ~~~kI~VIG-aG~vG~~ia~~la~~g~~------~v~L~Di~~--~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~   72 (322)
T 1t2d_A            3 PKAKIVLVG-SGMIGGVMATLIVQKNLG------DVVLFDIVK--NMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAG   72 (322)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCC------EEEEECSSS--SHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTT
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCC------eEEEEeCCH--HHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCC
Confidence            457999999 599999999999988764      599999974  7888889999886432  23467777776 89999


Q ss_pred             CcEEEEeCCCCCCCCCc-----HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEee
Q 022227           82 VNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL  156 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~-----r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~  156 (300)
                      ||+||+++|.|+++|++     |.|++.+|+++++++++.|++++| ++++|++|||++++++++++. +++|++|+.|.
T Consensus        73 aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~iiv~tNP~~~~t~~~~~~-~g~~~~rviG~  150 (322)
T 1t2d_A           73 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP-NAFIIVVTNPVDVMVQLLHQH-SGVPKNKIIGL  150 (322)
T ss_dssp             CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSSHHHHHHHHHHH-HCCCGGGEEEC
T ss_pred             CCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCChHHHHHHHHHh-cCCChHHEEec
Confidence            99999999999999999     999999999999999999999996 789999999999999999998 78999997565


Q ss_pred             -ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccc----hhHHHHHHHhH
Q 022227          157 -TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWL----NGEFITTVQQR  231 (300)
Q Consensus       157 -t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~----~~~~~~~v~~~  231 (300)
                       |.||++|+++++|+++|+++++|+.+ ||||||++++|+||++++    +|+|+.+++.+. |.    .+++.++++++
T Consensus       151 gt~ld~~R~~~~la~~lgv~~~~v~~~-v~G~HG~~~~p~~s~~~v----~g~~~~~~~~~~-~~~~~~~~~~~~~v~~~  224 (322)
T 1t2d_A          151 GGVLDTSRLKYYISQKLNVCPRDVNAH-IVGAHGNKMVLLKRYITV----GGIPLQEFINNK-LISDAELEAIFDRTVNT  224 (322)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHHTT-SSCHHHHHHHHHHHHTH
T ss_pred             cCcccHHHHHHHHHHHhCCCHHHeEEE-EEcCCCCcEEeeHHHceE----CcEeHHHhcccc-CCCHHHHHHHHHHHHHH
Confidence             89999999999999999999999988 599999999999999999    999999986543 43    36799999999


Q ss_pred             HHHHHhcCCccccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeeeec
Q 022227          232 GAAIIKARKLSSALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIVGH  292 (300)
Q Consensus       232 ~~~i~~~kg~t~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~~  292 (300)
                      |++|++.|| ++++++|.|+++++++|+.++        +.+|+||+ +|+|||+||++  ++.|..++..
T Consensus       225 g~eii~~kg-s~~~~~a~a~~~~~~ai~~~~~~v~~~s~~~~g~~g~-~~~~~~vP~~ig~~Gv~~i~~~~  293 (322)
T 1t2d_A          225 ALEIVNLHA-SPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGH-SDIFGGTPVVLGANGVEQVIELQ  293 (322)
T ss_dssp             HHHHHHHTS-SCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCC
T ss_pred             HHHHHhccC-chHHHHHHHHHHHHHHHHhCCCCEEEEEEEecCccCC-CceEEEEEEEEeCCeeEEeCCCC
Confidence            999999999 455699999999999988654        34599999 79999999999  6888887643

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=100.00  E-value=9e-50  Score=368.74  Aligned_cols=283  Identities=51%  Similarity=0.767  Sum_probs=246.5

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      |++ +|||+||||+||||++++..|+.+++++.++..+++++|+++..+++++..+|+.|..++...++..+.+.+++++
T Consensus         1 m~~-~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~   79 (327)
T 1y7t_A            1 MKA-PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFK   79 (327)
T ss_dssp             CCC-CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTT
T ss_pred             CCC-CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhC
Confidence            533 4799999988999999999999888764334458999998643356777888998865444466777778899999


Q ss_pred             CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehh
Q 022227           81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRL  159 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~l  159 (300)
                      |+|+|||+||.+++++++|.+++..|+.+++++++++++++ + +++++++|||++.++++..+..+++|+.++++.|.+
T Consensus        80 ~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~-~~~vvv~snp~~~~~~~~~~~~~~~~p~~~yg~tkl  158 (327)
T 1y7t_A           80 DADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK-DVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRL  158 (327)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCT-TCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHH
T ss_pred             CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCC-CeEEEEeCCchhhhHHHHHHHcCCCChhheeccchH
Confidence            99999999999998999999999999999999999999997 6 689999999999999988886336888889999999


Q ss_pred             hHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcC
Q 022227          160 DHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKAR  239 (300)
Q Consensus       160 d~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~k  239 (300)
                      |++|+++.+++++|+++..++.++|||+||++++|.|+++.+    +|+|+.+++. ++|..+++.++++++|++|++.|
T Consensus       159 ~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~~~~~~~~~~~~----~g~~l~~~~~-~~~~~~~~~~~v~~~g~~ii~~k  233 (327)
T 1y7t_A          159 DHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEV----DGRPALELVD-MEWYEKVFIPTVAQRGAAIIQAR  233 (327)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEE----TTEEGGGTSC-HHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcChhheeeeEEEcCCCCeEEEEeeeeee----CCeeHHHhcc-chhHHHHHHHHHHHHHHHHHHcc
Confidence            999999999999999999999877899999999999999999    9999998764 35656789999999999999999


Q ss_pred             CccccchHHHHHHHHHhhhhccC----------CCccccCCCCCeEEEEeEEE-CCeeeeee
Q 022227          240 KLSSALSAASSACDHIRDWVLGT----------PEVGSLLIFTPMIYTELVSW-LEPWTAIV  290 (300)
Q Consensus       240 g~t~~~s~a~ai~~~~~~~~~~t----------~~~g~ygi~~~v~~s~Pv~~-~~~~~~~~  290 (300)
                      |.++++++|.|+++++++|+.++          +.+|+||+|+|+|||+||++ ++.|.+++
T Consensus       234 g~~~~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~g~yg~~~~~~~~~P~~i~~G~~~i~~  295 (327)
T 1y7t_A          234 GASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVE  295 (327)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHTBCCTTCCEEEEEECSSGGGCCTTSEEEEEEEEETTEEEECC
T ss_pred             CCCchHHHHHHHHHHHHHHHcCCCCCeEEEEEEEecCccCCCCCeEEEEEEEEcCCeEEecC
Confidence            98888888899999999998774          22489999999999999999 89998876

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=100.00  E-value=6.3e-50  Score=370.24  Aligned_cols=274  Identities=20%  Similarity=0.254  Sum_probs=236.9

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC--CcccEEEeCChhhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEA   78 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~--~~~~v~~~~~~~~a   78 (300)
                      |..+++||+|+| +|.+|++++..|+..+++      +|+|+|+++  +++++.++|+.+....  ...+++.++++.++
T Consensus         5 ~~~~~~kI~VIG-aG~vG~~lA~~la~~g~~------~V~L~D~~~--~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea   75 (331)
T 1pzg_A            5 LVQRRKKVAMIG-SGMIGGTMGYLCALRELA------DVVLYDVVK--GMPEGKALDLSHVTSVVDTNVSVRAEYSYEAA   75 (331)
T ss_dssp             CCSCCCEEEEEC-CSHHHHHHHHHHHHHTCC------EEEEECSSS--SHHHHHHHHHHHHHHHTTCCCCEEEECSHHHH
T ss_pred             cCCCCCEEEEEC-CCHHHHHHHHHHHhCCCC------eEEEEECCh--hHHHHHHHHHHhhhhccCCCCEEEEeCCHHHH
Confidence            334568999999 599999999999987753      699999974  6788878888886532  23567778888779


Q ss_pred             cCCCcEEEEeCCCCCCCCC-----cHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE
Q 022227           79 CTGVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI  153 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~~g~-----~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i  153 (300)
                      ++|||+||+++|.|+++|+     +|.|++.+|+++++++++.|++++| ++++|++|||++++|+++++. +++|++|+
T Consensus        76 ~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~vi~~tNP~~~~t~~~~~~-~~~~~~rv  153 (331)
T 1pzg_A           76 LTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCP-KTFIIVVTNPLDCMVKVMCEA-SGVPTNMI  153 (331)
T ss_dssp             HTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEECCSSHHHHHHHHHHH-HCCCGGGE
T ss_pred             hCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEEcCchHHHHHHHHHh-cCCChhcE
Confidence            9999999999999999999     9999999999999999999999996 799999999999999999998 78999997


Q ss_pred             Eee-ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccc----hhHHHHHH
Q 022227          154 TCL-TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWL----NGEFITTV  228 (300)
Q Consensus       154 ~~~-t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~----~~~~~~~v  228 (300)
                      .|. |.||++|+++++|+++|+++++|+.+ |||+||+++||+||++++    +|+|+.+++++ .|.    .+++.+++
T Consensus       154 iG~gt~LD~~R~~~~la~~lgv~~~~v~~~-v~G~Hg~~~~p~~s~~~v----~G~~~~~~~~~-~~~~~~~~~~~~~~~  227 (331)
T 1pzg_A          154 CGMACMLDSGRFRRYVADALSVSPRDVQAT-VIGTHGDCMVPLVRYITV----NGYPIQKFIKD-GVVTEKQLEEIAEHT  227 (331)
T ss_dssp             EECCHHHHHHHHHHHHHHHHTSCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHHT-TSSCHHHHHHHHHHH
T ss_pred             EeccchHHHHHHHHHHHHHhCCCHHHceEE-EecCCCCCEeeeeecceE----CCEEHHHHhhc-ccCCHHHHHHHHHHH
Confidence            565 89999999999999999999999987 599999999999999999    99999998644 233    35688889


Q ss_pred             HhHHHHHHh--cCCccccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeeeecc
Q 022227          229 QQRGAAIIK--ARKLSSALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIVGHL  293 (300)
Q Consensus       229 ~~~~~~i~~--~kg~t~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~~~  293 (300)
                      +++|++|++  .|| ++++++|.++++++++|+.++        +.+|+||+ +|+|||+||++  ++.|..++..|
T Consensus       228 ~~~g~eii~~~~kg-st~~~~a~a~~~ii~ai~~~~~~~~~~~v~~~G~~g~-~~~~~~vP~~vg~~Gv~~i~~~~L  302 (331)
T 1pzg_A          228 KVSGGEIVRFLGQG-SAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGL-KDMFIGLPAVIGGAGIERVIELEL  302 (331)
T ss_dssp             HHHHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCC
T ss_pred             HhccHHHHHhhcCC-CccchHHHHHHHHHHHHHhCCCcEEEEEEEecCccCC-CceEEEEEEEEeCCeeEEecCCCC
Confidence            999999999  677 456799999999999988654        34599999 79999999999  68888776544

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=100.00  E-value=2.3e-49  Score=366.03  Aligned_cols=269  Identities=21%  Similarity=0.301  Sum_probs=233.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC--CcccEEEeCChhhhcCCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEACTGV   82 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~--~~~~v~~~~~~~~a~~~a   82 (300)
                      ++||+|+| +|.+|+.++..|+..+++      +++|+|+++  +++++.++|+.+....  ...+++.+++. ++++||
T Consensus        14 ~~kI~ViG-aG~vG~~iA~~la~~g~~------~V~L~Di~~--~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~a   83 (328)
T 2hjr_A           14 RKKISIIG-AGQIGSTIALLLGQKDLG------DVYMFDIIE--GVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNS   83 (328)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCC------EEEEECSST--THHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCC------eEEEEECCH--HHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCC
Confidence            46999999 599999999999988753      599999974  7788888888886532  23567777776 899999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEee-ehhhH
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDH  161 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~-t~ld~  161 (300)
                      |+||+++|.|+++|++|.|++.+|+++++++++.+++++| ++++|++|||++.+|+++++. +++|++|+.|. |.||+
T Consensus        84 D~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~-~~~~~~rviG~~t~Ld~  161 (328)
T 2hjr_A           84 DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCP-NAFVICITNPLDAMVYYFKEK-SGIPANKVCGMSGVLDS  161 (328)
T ss_dssp             SEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCT-TCEEEECCSSHHHHHHHHHHH-HCCCGGGEEESCHHHHH
T ss_pred             CEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCC-CeEEEEecCchHHHHHHHHHh-cCCChhhEEEeCcHHHH
Confidence            9999999999999999999999999999999999999996 789999999999999999987 78999997666 69999


Q ss_pred             HHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccch----hHHHHHHHhHHHHHHh
Q 022227          162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLN----GEFITTVQQRGAAIIK  237 (300)
Q Consensus       162 ~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~----~~~~~~v~~~~~~i~~  237 (300)
                      +|+++++|+++|+++++|+.+ ||||||++++|+||++++    +|+|+.+++.+ .|..    +++.++++++|++|++
T Consensus       162 ~R~~~~la~~lgv~~~~v~~~-v~G~Hg~t~~p~~s~~~v----~G~~~~~~~~~-~~~~~~~~~~~~~~v~~~g~eii~  235 (328)
T 2hjr_A          162 ARFRCNLSRALGVKPSDVSAI-VVGGHGDEMIPLTSSVTI----GGILLSDFVEQ-GKITHSQINEIIKKTAFGGGEIVE  235 (328)
T ss_dssp             HHHHHHHHHHHTSCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHHT-TSSCHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHeeEE-EecCCCCceeeeeeeceE----CCEEHHHHhhc-cCCCHHHHHHHHHHHHhhHHHHHh
Confidence            999999999999999999987 599999999999999999    99999998755 3432    5788899999999999


Q ss_pred             c--CCccccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeeeecc
Q 022227          238 A--RKLSSALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIVGHL  293 (300)
Q Consensus       238 ~--kg~t~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~~~  293 (300)
                      .  ||. .++++|.++++++++|+.++        +.+|+||+ +|+|||+||++  ++.|..++..|
T Consensus       236 ~~~~gs-~~~~~a~a~~~i~~ai~~~~~~v~~~~v~~~G~~g~-~~~~~~vP~~ig~~Gv~~i~~~~L  301 (328)
T 2hjr_A          236 LLKTGS-AFYAPAASAVAMAQAYLKDSKSVLVCSTYLTGQYNV-NNLFVGVPVVIGKNGIEDVVIVNL  301 (328)
T ss_dssp             HHSSCC-CCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCC
T ss_pred             hhCCCc-hHHHHHHHHHHHHHHHHcCCCcEEEEEEeecCccCC-CceEEEEEEEEeCCeeEEecCCCC
Confidence            4  664 44589999999999988654        33599999 79999999999  68888776544

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=100.00  E-value=2.6e-49  Score=361.46  Aligned_cols=253  Identities=17%  Similarity=0.203  Sum_probs=214.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +++||+|+| +|++|+.+++.|+..++++     +|+|+|+++  + +.+.++|+.+...   .+++.++++ ++++|||
T Consensus        13 ~~~kV~ViG-aG~vG~~~a~~l~~~g~~~-----ev~L~Di~~--~-~~g~a~dl~~~~~---~~i~~t~d~-~~l~~aD   79 (303)
T 2i6t_A           13 TVNKITVVG-GGELGIACTLAISAKGIAD-----RLVLLDLSE--G-TKGATMDLEIFNL---PNVEISKDL-SASAHSK   79 (303)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECCC--------CHHHHHHHTC---TTEEEESCG-GGGTTCS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEcCCc--c-hHHHHHHHhhhcC---CCeEEeCCH-HHHCCCC
Confidence            357999999 6999999999999888765     899999974  4 6788899998543   267777775 8999999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEee-ehhhHH
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHN  162 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~-t~ld~~  162 (300)
                      +||+++|.+ +||++|.|++.+|+++++++++.++++|| ++++|++|||+|++|+++++. +++|++|+.|. |.||+.
T Consensus        80 ~Vi~aag~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~p-~a~iiv~sNP~~~~t~~~~~~-~~~p~~rviG~gt~Ld~~  156 (303)
T 2i6t_A           80 VVIFTVNSL-GSSQSYLDVVQSNVDMFRALVPALGHYSQ-HSVLLVASQPVEIMTYVTWKL-STFPANRVIGIGCNLDSQ  156 (303)
T ss_dssp             EEEECCCC-----CCHHHHHHHHHHHHHHHHHHHHHHTT-TCEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTHHHHH
T ss_pred             EEEEcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEcCChHHHHHHHHHHh-cCCCHHHeeCCCCCchHH
Confidence            999999996 79999999999999999999999999996 789999999999999999998 79999997666 999999


Q ss_pred             HHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHhcCCcc
Q 022227          163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS  242 (300)
Q Consensus       163 R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~t  242 (300)
                      |+++++|+++|+++++|+.++ |||||++++|+||++.                 +|..+++.++++++|++|++.|| +
T Consensus       157 R~~~~la~~lgv~~~~v~~~v-~G~Hg~s~~p~~s~~~-----------------~~~~~~~~~~~~~~g~eii~~kG-s  217 (303)
T 2i6t_A          157 RLQYIITNVLKAQTSGKEVWV-IGEQGEDKVLTWSGQE-----------------EVVSHTSQVQLSNRAMELLRVKG-Q  217 (303)
T ss_dssp             HHHHHHHHTSCCTTGGGGEEE-EBSCSSSCEEEEBCSS-----------------CCCCHHHHHHHHHHHHTTSSSCC-C
T ss_pred             HHHHHHHHHcCCChHHeEEEE-ecCCCCCccccccccc-----------------cccHHHHHHHHHHHHHHHHHccC-c
Confidence            999999999999999999875 9999999999999941                 12346789999999999999998 4


Q ss_pred             ccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeeee
Q 022227          243 SALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIVG  291 (300)
Q Consensus       243 ~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~  291 (300)
                      +++++|.++++++++|+.++        +.+|+||+|+|+|||+||++  +++|..++.
T Consensus       218 t~~~~a~a~~~i~~ai~~~~~~~~~vs~~~~g~yg~~~~~~~~vP~~ig~~Gv~~i~~~  276 (303)
T 2i6t_A          218 RSWSVGLSVADMVDSIVNNKKKVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVIKT  276 (303)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCB
T ss_pred             hHHhHHHHHHHHHHHHHcCCCcEEEEEEEeCCccCCCCCeEEEEEEEEECCccEEecCC
Confidence            55699999999999987654        44599999999999999999  688877653

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=100.00  E-value=6.7e-49  Score=360.87  Aligned_cols=258  Identities=22%  Similarity=0.301  Sum_probs=217.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEE---eCChhhhcCCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA---TTDAVEACTGV   82 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~---~~~~~~a~~~a   82 (300)
                      |||+||||+|+||++++..|+..++..     +|+|+|+++    +++.++||.|...+  .++..   +++..++++||
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~-----ev~L~Di~~----~~~~a~dL~~~~~~--~~l~~~~~t~d~~~a~~~a   69 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVS-----RLTLYDIAH----TPGVAADLSHIETR--ATVKGYLGPEQLPDCLKGC   69 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCS-----EEEEEESSS----HHHHHHHHTTSSSS--CEEEEEESGGGHHHHHTTC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCc-----EEEEEeCCc----cHHHHHHHhccCcC--ceEEEecCCCCHHHHhCCC
Confidence            599999977999999999999877643     899999974    57788999997643  24444   24666789999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCCcEEeeeh
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLTR  158 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~~i~~~t~  158 (300)
                      |+||+++|.|+++|++|.|++.+|+++++++++.+++++| ++++|++|||+|++|+    ++++. +++|++|+.+.|.
T Consensus        70 DvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~~~~~~~~-~~~p~~rvig~t~  147 (314)
T 1mld_A           70 DVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP-DAMICIISNPVNSTIPITAEVFKKH-GVYNPNKIFGVTT  147 (314)
T ss_dssp             SEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSCHHHHHHHHHHHHHHT-TCCCTTSEEECCH
T ss_pred             CEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEECCCcchhHHHHHHHHHHc-CCCCcceEEEeec
Confidence            9999999999999999999999999999999999999996 7899999999999985    44454 7899999877799


Q ss_pred             hhHHHHHHHHHHHcCCCCCCeEEEEEecCC-CCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHh
Q 022227          159 LDHNRALGQISEKLNVQVSDVKNVIIWGNH-SSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK  237 (300)
Q Consensus       159 ld~~R~~~~la~~l~v~~~~V~~~~V~G~h-g~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~  237 (300)
                      ||+.|+++++|+++|++|++|+.+ ||||| |++++|+||++++    .-    + +.++.|  +++.++++++|++|++
T Consensus       148 Ld~~r~~~~la~~l~v~~~~v~~~-v~G~H~G~~~~p~~s~~~~----~~----~-~~~~~~--~~~~~~v~~~g~eii~  215 (314)
T 1mld_A          148 LDIVRANAFVAELKGLDPARVSVP-VIGGHAGKTIIPLISQCTP----KV----D-FPQDQL--STLTGRIQEAGTEVVK  215 (314)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGCBCC-EEECSSGGGEEECGGGCBS----CC----C-CCHHHH--HHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhCcChHhEEEE-EccCCCCCcEeeecccCCC----cc----c-CCHHHH--HHHHHHHHHHHHHHHh
Confidence            999999999999999999999976 59999 7999999999985    11    2 333343  6899999999999999


Q ss_pred             cC-Cc-cccchHHHHHHHHHhhhhccC----------CCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          238 AR-KL-SSALSAASSACDHIRDWVLGT----------PEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       238 ~k-g~-t~~~s~a~ai~~~~~~~~~~t----------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      .| |. +.++++|.|+++++++|+.++          +.+|+|  ++|+|||+||++  +++|..+.
T Consensus       216 ~k~~~g~t~~~~a~a~~~~~~ai~~~~~g~~~v~~~~~~~g~y--~~~~~~~~P~~ig~~Gv~~i~~  280 (314)
T 1mld_A          216 AKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQE--TDCPYFSTPLLLGKKGIEKNLG  280 (314)
T ss_dssp             HHTTSCSCCHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEECCS--SSSSEEEEEEEEETTEEEEECC
T ss_pred             hhcCCCCcchhHHHHHHHHHHHHHcCcCCCcceEEEEEeCCcc--CCceEEEEEEEEeCCeeEEecC
Confidence            76 33 335699999999999988652          234889  789999999999  68887643

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=100.00  E-value=1.2e-48  Score=357.90  Aligned_cols=264  Identities=17%  Similarity=0.249  Sum_probs=204.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+|+| +|.+|++++..|+..++++     +++|+|++  ++++++.++|+.+.. +......++.+.+++++|||+|
T Consensus         1 mkI~VIG-aG~vG~~la~~la~~g~~~-----eV~L~D~~--~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~a~~~aDvV   71 (304)
T 2v6b_A            1 MKVGVVG-TGFVGSTAAFALVLRGSCS-----ELVLVDRD--EDRAQAEAEDIAHAA-PVSHGTRVWHGGHSELADAQVV   71 (304)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCCS-----EEEEECSS--HHHHHHHHHHHTTSC-CTTSCCEEEEECGGGGTTCSEE
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCCC-----EEEEEeCC--HHHHHHHHHhhhhhh-hhcCCeEEEECCHHHhCCCCEE
Confidence            5999999 5999999999999888655     89999997  477888899998876 3223333322346899999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-EeeehhhHHHH
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHNRA  164 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~ld~~R~  164 (300)
                      |++++.|+++|++|.|++.+|+++++++++.+++++| ++++|++|||++.+++++++..   |++|+ +.+|.||+.|+
T Consensus        72 Ii~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~~~vi~~tNP~~~~~~~~~~~~---~~~rviG~gt~Ld~~r~  147 (304)
T 2v6b_A           72 ILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAP-DAVLLVTSNPVDLLTDLATQLA---PGQPVIGSGTVLDSARF  147 (304)
T ss_dssp             EECC------------CHHHHHHHHHHHHHHHHHHCS-SSEEEECSSSHHHHHHHHHHHS---CSSCEEECTTHHHHHHH
T ss_pred             EEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCC-CeEEEEecCchHHHHHHHHHhC---ChhcEEeCCcCchHHHH
Confidence            9999999999999999999999999999999999986 7899999999999999999983   77786 55699999999


Q ss_pred             HHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccc--c---chhHHHHHHHhHHHHHHhcC
Q 022227          165 LGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA--W---LNGEFITTVQQRGAAIIKAR  239 (300)
Q Consensus       165 ~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~--~---~~~~~~~~v~~~~~~i~~~k  239 (300)
                      ++++|+++|+++++|+.+ ||||||++++|+||++++    +|+|+.+++.+..  |   ..+++.++++++|++|++.|
T Consensus       148 ~~~la~~l~v~~~~v~~~-v~G~Hg~~~~p~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~~k  222 (304)
T 2v6b_A          148 RHLMAQHAGVDGTHAHGY-VLGEHGDSEVLAWSSAMV----AGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGK  222 (304)
T ss_dssp             HHHHHHHHTSCGGGEECC-EEESSSTTEEECGGGCEE----TTEEHHHHHHHHTCCCSHHHHHHHHHHHTC---------
T ss_pred             HHHHHHHhCcCHHHceEE-EecCCCCceeeehhHccC----CCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999986 599999999999999999    9999999875433  4   24689999999999999999


Q ss_pred             CccccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeeeecc
Q 022227          240 KLSSALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIVGHL  293 (300)
Q Consensus       240 g~t~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~~~  293 (300)
                      |.+++ ++|.++++++++|+.+.        +.+| ||    +|||+||++  ++.|..++..|
T Consensus       223 g~t~~-~~a~a~~~~~~ai~~~~~~~~~~~~~~~g-yg----~~~~~P~~ig~~Gv~~i~~~~l  280 (304)
T 2v6b_A          223 RATYY-GIGAALARITEAVLRDRRAVLTVSAPTPE-YG----VSLSLPRVVGRQGVLSTLHPKL  280 (304)
T ss_dssp             --CCH-HHHHHHHHHHHHHHTTCCEEEEEEEEETT-TT----EEEEEEEEEETTEEEEECCCCC
T ss_pred             CCcHH-HHHHHHHHHHHHHHhCCCcEEEEEEEECC-cC----cEEEEEEEEeCCeeEEEcCCCC
Confidence            97664 78999999999988653        3458 87    999999999  68998877544

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=100.00  E-value=3.2e-48  Score=355.91  Aligned_cols=267  Identities=22%  Similarity=0.322  Sum_probs=231.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC--CcccEEEeCChhhhcCCCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~--~~~~v~~~~~~~~a~~~aD   83 (300)
                      |||+|+| +|.+|++++..|+..++..     +|+|+|+++  +++++..+|+.+....  ...++..+++. +++++||
T Consensus         1 mkI~VIG-aG~vG~~la~~la~~~~g~-----~V~l~D~~~--~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~~l~~aD   71 (310)
T 1guz_A            1 MKITVIG-AGNVGATTAFRLAEKQLAR-----ELVLLDVVE--GIPQGKALDMYESGPVGLFDTKVTGSNDY-ADTANSD   71 (310)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCCS-----EEEEECSSS--SHHHHHHHHHHTTHHHHTCCCEEEEESCG-GGGTTCS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCCC-----EEEEEeCCh--hHHHHHHHhHHhhhhcccCCcEEEECCCH-HHHCCCC
Confidence            5999999 5999999999998864322     899999974  6778888788775321  23456666776 4599999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEe-eehhhHH
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC-LTRLDHN  162 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~-~t~ld~~  162 (300)
                      +||++++.|+++|++|.|++.+|+++++++++.+++++| ++++|++|||++.+++++++. +++|++|+.+ +|.||+.
T Consensus        72 vViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~-~~~viv~tNP~~~~~~~~~~~-~~~~~~rviG~gt~ld~~  149 (310)
T 1guz_A           72 IVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLDIMTHVAWVR-SGLPKERVIGMAGVLDAA  149 (310)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCS-SCEEEECCSSHHHHHHHHHHH-HCSCGGGEEEECHHHHHH
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEEcCchHHHHHHHHHh-cCCChHHEEECCCchHHH
Confidence            999999999999999999999999999999999999986 789999999999999999998 7899988655 4999999


Q ss_pred             HHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHh--cCC
Q 022227          163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK--ARK  240 (300)
Q Consensus       163 R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~--~kg  240 (300)
                      |+++++|+++|+++++|+.+ ||||||++++|+||++++    +|+|+.+++.++.|  +++.++++++|++|++  .||
T Consensus       150 r~~~~la~~l~v~~~~v~~~-v~G~Hg~~~~p~~s~~~v----~g~~~~~~~~~~~~--~~~~~~v~~~g~~ii~~~~kg  222 (310)
T 1guz_A          150 RFRSFIAMELGVSMQDINAC-VLGGHGDAMVPVVKYTTV----AGIPISDLLPAETI--DKLVERTRNGGAEIVEHLKQG  222 (310)
T ss_dssp             HHHHHHHHHHTCCGGGEECC-EEECSGGGEEECGGGCEE----TTEEHHHHSCHHHH--HHHHHHHHTHHHHHHHHHSSS
T ss_pred             HHHHHHHHHhCCCHHHeEEE-EEcccCCcEeeeeecccC----CCEEHHHHCCHHHH--HHHHHHHHHhHHHHHhhcCCC
Confidence            99999999999999999986 599999999999999999    99999998866553  6899999999999999  687


Q ss_pred             ccccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeeeec
Q 022227          241 LSSALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIVGH  292 (300)
Q Consensus       241 ~t~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~~  292 (300)
                       ++++++|.|+++++++|+.++        +.+|+||+ +|+|||+||++  ++.|..++..
T Consensus       223 -s~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~g~~g~-~~~~~~~P~~ig~~Gv~~i~~~~  282 (310)
T 1guz_A          223 -SAFYAPASSVVEMVESIVLDRKRVLPCAVGLEGQYGI-DKTFVGVPVKLGRNGVEQIYEIN  282 (310)
T ss_dssp             -CCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCC
T ss_pred             -CcHHHHHHHHHHHHHHHHcCCCcEEEEEEeecCccCC-cceEEEEEEEEeCCeeEEEcCCC
Confidence             555699999999999988654        34599999 89999999999  6888876643

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=100.00  E-value=3.4e-47  Score=351.30  Aligned_cols=263  Identities=22%  Similarity=0.320  Sum_probs=216.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEE---eCChhhhcC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA---TTDAVEACT   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~---~~~~~~a~~   80 (300)
                      +++||+||||+|+||++++..|+..++..     +|+|+|+++  +  ++.++||.+...+  ..+..   +++.+++++
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~-----ev~l~Di~~--~--~~~~~dL~~~~~~--~~v~~~~~t~d~~~al~   75 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVS-----VLHLYDVVN--A--PGVTADISHMDTG--AVVRGFLGQQQLEAALT   75 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEE-----EEEEEESSS--H--HHHHHHHHTSCSS--CEEEEEESHHHHHHHHT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCC-----EEEEEeCCC--c--HhHHHHhhccccc--ceEEEEeCCCCHHHHcC
Confidence            56899999988999999999998876432     899999974  2  6678899886533  13333   446778999


Q ss_pred             CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh----HHHHHHHHCCCCCCCcEEee
Q 022227           81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT----NALILKEFAPSIPAKNITCL  156 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~----~~~~~~~~~~~~p~~~i~~~  156 (300)
                      |||+||++||.+++++++|.+++..|+++++++++++++++| +++++++|||+|+    +++.+++. +++|++|+.|.
T Consensus        76 gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p-~~~viv~SNPv~~~~~~~t~~~~~~-~~~p~~rviG~  153 (326)
T 1smk_A           76 GMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCP-RAIVNLISNPVNSTVPIAAEVFKKA-GTYDPKRLLGV  153 (326)
T ss_dssp             TCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSHHHHHHHHHHHHHHH-TCCCTTSEEEC
T ss_pred             CCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEECCchHHHHHHHHHHHHHc-cCCCcccEEEE
Confidence            999999999999999999999999999999999999999997 6899999999999    55666777 79999998777


Q ss_pred             ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC-CCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHH
Q 022227          157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNH-SSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAI  235 (300)
Q Consensus       157 t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h-g~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i  235 (300)
                      |.||+.|+++++|+++|++|++|+.+ ||||| |++++|+||++++    ..    + ++++.|  +++.++++++|++|
T Consensus       154 ~~Ld~~r~~~~la~~l~v~~~~v~~~-v~G~H~G~~~~p~~s~~~v----~~----~-~~~~~~--~~~~~~v~~~g~ei  221 (326)
T 1smk_A          154 TMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKP----PS----S-FTQEEI--SYLTDRIQNGGTEV  221 (326)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGCBCC-EEECSSGGGEEECGGGCBS----CC----C-CCHHHH--HHHHHHHHHHHHHH
T ss_pred             eehHHHHHHHHHHHHhCcChhheEEE-EecccCCceEEEecccCee----cC----c-CCHHHH--HHHHHHHHHHHHHH
Confidence            99999999999999999999999976 59999 8999999999999    32    1 233333  68999999999999


Q ss_pred             HhcC-Cc-cccchHHHHHHHHHhh---hhccCCC-------ccccCCCCCeEEEEeEEE--CCeeeeee-ecc
Q 022227          236 IKAR-KL-SSALSAASSACDHIRD---WVLGTPE-------VGSLLIFTPMIYTELVSW--LEPWTAIV-GHL  293 (300)
Q Consensus       236 ~~~k-g~-t~~~s~a~ai~~~~~~---~~~~t~~-------~g~ygi~~~v~~s~Pv~~--~~~~~~~~-~~~  293 (300)
                      ++.| |. +.++++|.|+++++++   |+.+++.       +|+  +|+|+|||+||++  ++.|..++ ..|
T Consensus       222 i~~k~~~gs~~~~~a~a~~~~~~ai~~~~~~~~~v~~~~~~~g~--~~~~~~~~vP~~ig~~Gv~~i~~~~~L  292 (326)
T 1smk_A          222 VEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQ--VTELPFFASKVRLGRNGIEEVYSLGPL  292 (326)
T ss_dssp             HHHTTTSCCCCHHHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC--SSSSSEEEEEEEEETTEEEEECCCCCC
T ss_pred             HhcccCCCCcHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeeccc--cCCceEEEEEEEEeCCeeEEEcCCCCC
Confidence            9987 43 3346888888888544   4766532       365  5689999999999  68888877 444

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=8e-46  Score=341.28  Aligned_cols=269  Identities=16%  Similarity=0.232  Sum_probs=229.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-cccEEEeCChhhhcCCCcE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-~~~v~~~~~~~~a~~~aDv   84 (300)
                      |||+|+| +|.+|++++..|+..++.+     +|+|+|++  ++++++...|+.+..... ..++.. ++ ++++++||+
T Consensus         1 mkI~VIG-aG~~G~~la~~l~~~g~~~-----~V~l~D~~--~~~~~~~~~~l~~~~~~~~~~~i~~-~d-~~~~~~aDv   70 (319)
T 1a5z_A            1 MKIGIVG-LGRVGSSTAFALLMKGFAR-----EMVLIDVD--KKRAEGDALDLIHGTPFTRRANIYA-GD-YADLKGSDV   70 (319)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSS--HHHHHHHHHHHHHHGGGSCCCEEEE-CC-GGGGTTCSE
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCCC-----eEEEEeCC--hHHHHHHHHHHHhhhhhcCCcEEEe-CC-HHHhCCCCE
Confidence            5999999 5999999999999887643     79999996  467777777877654211 123433 34 678999999


Q ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-EeeehhhHHH
Q 022227           85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHNR  163 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~ld~~R  163 (300)
                      ||++++.+++++++|.|++.+|+++++++++.+++++| ++++|++|||++.+++++++. .++|++++ +.+|.||+.|
T Consensus        71 Viiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~~~~~~~~~-~~~~~~rviG~~t~ld~~r  148 (319)
T 1a5z_A           71 VIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP-DSIVIVVTNPVDVLTYFFLKE-SGMDPRKVFGSGTVLDTAR  148 (319)
T ss_dssp             EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHHHHHHHHH-HTCCTTTEEECTTHHHHHH
T ss_pred             EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeCCcHHHHHHHHHHH-hCCChhhEEeeCccHHHHH
Confidence            99999999999999999999999999999999999986 789999999999999999887 58888886 5569999999


Q ss_pred             HHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccc-cc---hhHHHHHHHhHHHHHHhcC
Q 022227          164 ALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA-WL---NGEFITTVQQRGAAIIKAR  239 (300)
Q Consensus       164 ~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~-~~---~~~~~~~v~~~~~~i~~~k  239 (300)
                      +++++|+++|+++.+|+.++ |||||++++|+||++++    +|+|+.+++.+.. |.   .+++.++++++|++|++.|
T Consensus       149 ~~~~la~~lgv~~~~v~~~v-~G~hg~~~~p~~s~~~v----~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k  223 (319)
T 1a5z_A          149 LRTLIAQHCGFSPRSVHVYV-IGEHGDSEVPVWSGAMI----GGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK  223 (319)
T ss_dssp             HHHHHHHHHTCCGGGEECCE-EBCSSTTCEECGGGCEE----TTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCHHHceEEE-EeCCCCCcccchhhceE----CCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhccC
Confidence            99999999999999999875 99999999999999999    9999999875422 32   3679999999999999999


Q ss_pred             CccccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeeeecc
Q 022227          240 KLSSALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIVGHL  293 (300)
Q Consensus       240 g~t~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~~~  293 (300)
                      |.+++ ++|.|+++++++|+.+.        +.+|+||+ +|+|||+||++  ++.|..++..|
T Consensus       224 g~~~~-~~a~a~~~~~~ai~~~~~~~~~~~~~~~g~~g~-~~~~~~vP~~vg~~Gv~~i~~~~L  285 (319)
T 1a5z_A          224 GATHY-AIALAVADIVESIFFDEKRVLTLSVYLEDYLGV-KDLCISVPVTLGKHGVERILELNL  285 (319)
T ss_dssp             SCCCH-HHHHHHHHHHHHHHTTCCEEEEEEEEESSBTTB-CSEEEEEEEEEETTEEEEECCCCC
T ss_pred             CchHH-HHHHHHHHHHHHHHhCCCCEEEEEEEecCccCc-cceEEEEEEEEeCCceEEEecCCC
Confidence            97664 77899999999988654        34599999 89999999999  68888876544

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=100.00  E-value=1e-42  Score=320.28  Aligned_cols=273  Identities=16%  Similarity=0.267  Sum_probs=230.0

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC--CcccEEEeCChhhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEA   78 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~--~~~~v~~~~~~~~a   78 (300)
                      |++ ++||+|+| +|.+|+.++..|+..|+.      +++|+|+++  +++++..+|+.+....  ...++..+++. ++
T Consensus         1 M~~-~~kI~VIG-aG~~G~~ia~~la~~g~~------~V~l~D~~~--~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a   69 (317)
T 2ewd_A            1 MIE-RRKIAVIG-SGQIGGNIAYIVGKDNLA------DVVLFDIAE--GIPQGKALDITHSMVMFGSTSKVIGTDDY-AD   69 (317)
T ss_dssp             CCC-CCEEEEEC-CSHHHHHHHHHHHHHTCC------EEEEECSSS--SHHHHHHHHHHHHHHHHTCCCCEEEESCG-GG
T ss_pred             CCC-CCEEEEEC-CCHHHHHHHHHHHhCCCc------eEEEEeCCc--hHHHHHHHHHHhhhhhcCCCcEEEECCCH-HH
Confidence            644 47999999 699999999999988752      699999974  6777777787765421  23466666776 89


Q ss_pred             cCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEee-e
Q 022227           79 CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-T  157 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~-t  157 (300)
                      +++||+||+++|.|+++|++|.|++.+|+++++++++.+++++| ++++|++|||++.+++.+++. +++|++|+.+. |
T Consensus        70 ~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~sNp~~~~~~~~~~~-~~~~~~rviG~~t  147 (317)
T 2ewd_A           70 ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKV-SGLPHNKVCGMAG  147 (317)
T ss_dssp             GTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSHHHHHHHHHHH-HCCCGGGEEESCH
T ss_pred             hCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHh-hCCCHHHEEeccC
Confidence            99999999999999999999999999999999999999999997 789999999999999999987 68888887555 8


Q ss_pred             hhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccc----hhHHHHHHHhHHH
Q 022227          158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWL----NGEFITTVQQRGA  233 (300)
Q Consensus       158 ~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~----~~~~~~~v~~~~~  233 (300)
                      .+|+.|+++.+|+++|++++++++++ +|+||++++|+||++++    +|+|+.+++++. |.    .+++.++++.+++
T Consensus       148 ~ld~~r~~~~la~~lg~~~~~v~~~v-~g~Hg~~~~~~~~~a~v----~g~~~~~~~~~g-~~~~~~id~~~~~~~~~~~  221 (317)
T 2ewd_A          148 VLDSSRFRTFIAQHFGVNASDVSANV-IGGHGDGMVPATSSVSV----GGVPLSSFIKQG-LITQEQIDEIVCHTRIAWK  221 (317)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCE-EBCSSTTCEECGGGCEE----TTEEHHHHHHTT-SSCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcChhhceEEE-EecCCCceeEEeecccc----CCEEHHHHHhcc-CCCHHHHHHHHHHHHhhHH
Confidence            99999999999999999999999985 89999999999999999    999999886542 21    2567777888999


Q ss_pred             HHHhcCCc-cccchHHHHHHHHHhhhhccCC--------CccccCCCCCeEEEEeEEE--CCeeeeeeecc
Q 022227          234 AIIKARKL-SSALSAASSACDHIRDWVLGTP--------EVGSLLIFTPMIYTELVSW--LEPWTAIVGHL  293 (300)
Q Consensus       234 ~i~~~kg~-t~~~s~a~ai~~~~~~~~~~t~--------~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~~~  293 (300)
                      ++++..|. +.++++|.++++++++|+.+++        ..|+||+ +|+|||+||++  ++.|..++..|
T Consensus       222 ei~~~~g~g~~~~~~a~a~~~~~~ai~~~~~~~~~~~~~~~G~~g~-~~~~~~~P~~i~~~Gv~~i~~~~l  291 (317)
T 2ewd_A          222 EVADNLKTGTAYFAPAAAAVKMAEAYLKDKKAVVPCSAFCSNHYGV-KGIYMGVPTIIGKNGVEDILELDL  291 (317)
T ss_dssp             HHHHHHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEESSSTTC-SSEEEEEEEEEETTEEEEECCCCC
T ss_pred             HHHHhhcCCchHHHHHHHHHHHHHHHHcCCCeEEEEEEEecCccCC-cceEEEeEEEEcCCeeEEecCCCC
Confidence            99995333 4456899999999998876543        3499999 79999999999  68888776544

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=3.6e-42  Score=315.52  Aligned_cols=267  Identities=15%  Similarity=0.166  Sum_probs=219.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEE-eCChhhhcCCCcE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA-TTDAVEACTGVNI   84 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~-~~~~~~a~~~aDv   84 (300)
                      +||+|+| +|.+|+.++..|+..++..     +++|+|++  ++++++.+.|+.+........+.+ +++. +++++||+
T Consensus         2 ~kI~VIG-aG~~G~~la~~L~~~g~~~-----~V~l~d~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDv   72 (309)
T 1hyh_A            2 RKIGIIG-LGNVGAAVAHGLIAQGVAD-----DYVFIDAN--EAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADV   72 (309)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSS--HHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSE
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCCC-----EEEEEcCC--HHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCE
Confidence            6999999 7999999999999887522     89999996  467777777877654322223333 4565 88999999


Q ss_pred             EEEeCCCCCC----CCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEee-ehh
Q 022227           85 AVMVGGFPRK----EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRL  159 (300)
Q Consensus        85 Vi~~ag~~~~----~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~-t~l  159 (300)
                      ||++++.+++    ++++|.|++.+|+++++++++.+.+++| ++++|++|||++.+++++++. +++|++++.++ |.+
T Consensus        73 Viiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~~~~~~~~~-~~~~~~rvig~gt~l  150 (309)
T 1hyh_A           73 VISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLVVISNPVDVITALFQHV-TGFPAHKVIGTGTLL  150 (309)
T ss_dssp             EEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTHH
T ss_pred             EEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEEcCcHHHHHHHHHHh-cCCCHHHEeecCccc
Confidence            9999999998    9999999999999999999999999996 788999999999999999987 68998897665 999


Q ss_pred             hHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhh--hcccccchhHHHHHHHhHHHHHHh
Q 022227          160 DHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVREL--VKDDAWLNGEFITTVQQRGAAIIK  237 (300)
Q Consensus       160 d~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~--~~~~~~~~~~~~~~v~~~~~~i~~  237 (300)
                      |+.|+++.+++++++++.+|+.++ ||+||++++|+||++.+    +|+|+.++  +.++.|  +++.++++++|++|++
T Consensus       151 d~~r~~~~~a~~l~~~~~~v~~~v-~G~hg~~~~~~~s~~~v----~g~~~~~~~~~~~~~~--~~~~~~v~~~g~~ii~  223 (309)
T 1hyh_A          151 DTARMQRAVGEAFDLDPRSVSGYN-LGEHGNSQFVAWSTVRV----MGQPIVTLADAGDIDL--AAIEEEARKGGFTVLN  223 (309)
T ss_dssp             HHHHHHHHHHHHHTCCGGGCBCCE-EBCTTTTCEECTTTCEE----TTEEGGGC-----CCH--HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCChhheEEEE-EeCCCCcEeeccccceE----CCEEHHHhccCCHHHH--HHHHHHHHHhHHHHHh
Confidence            999999999999999999999875 89999999999999999    99999988  444444  6899999999999999


Q ss_pred             cCCccccchHHHHHHHHHhhhhccCCCc---cc--cCCCCCeEEEEeEEE--CCeeeeeeecc
Q 022227          238 ARKLSSALSAASSACDHIRDWVLGTPEV---GS--LLIFTPMIYTELVSW--LEPWTAIVGHL  293 (300)
Q Consensus       238 ~kg~t~~~s~a~ai~~~~~~~~~~t~~~---g~--ygi~~~v~~s~Pv~~--~~~~~~~~~~~  293 (300)
                      .||.+. +++|.++++++++|+.++...   +.  -|  +|++||+||++  ++.|..++..|
T Consensus       224 ~kg~~~-~~~a~a~~~~~~ai~~~~~~~~~~~~~~~g--~~~~~~vP~~i~~~Gv~~i~~~~l  283 (309)
T 1hyh_A          224 GKGYTS-YGVATSAIRIAKAVMADAHAELVVSNRRDD--MGMYLSYPAIIGRDGVLAETTLDL  283 (309)
T ss_dssp             HHSSCC-HHHHHHHHHHHHHHHTTCCEEEEEEEECTT--TCSEEEEEEEEETTEEEEECCCCC
T ss_pred             ccCCch-HHHHHHHHHHHHHHHcCCCcEEEEEEEECC--CCeEEEEEEEEeCCceEEEeCCCC
Confidence            999655 589999999999988765421   11  23  69999999999  58887766443

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=100.00  E-value=1.4e-35  Score=272.36  Aligned_cols=271  Identities=21%  Similarity=0.264  Sum_probs=224.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-cccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-~~~v~~~~~~~~a~~~a   82 (300)
                      ++|||+|+| +|.+|+.++..|+..+.++     +|+|+|++  ++++++.++|+.+..... ..++..+++ ++++++|
T Consensus         6 ~~mkI~IiG-aG~vG~~~a~~l~~~g~~~-----~V~l~d~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~a   76 (319)
T 1lld_A            6 KPTKLAVIG-AGAVGSTLAFAAAQRGIAR-----EIVLEDIA--KERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDA   76 (319)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHHTTCCS-----EEEEECSS--HHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCCC-----EEEEEeCC--hhHHHHHHHHHHhhhhhcCCeEEEeCCC-HHHhCCC
Confidence            458999999 6999999999999887654     79999996  356777777776654211 234444445 5789999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-EeeehhhH
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDH  161 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~ld~  161 (300)
                      |+||++++.++++|++|.+++.+|+++++++++.+++++| ++++++++||++.+++++++. +++|++++ +++|.+|+
T Consensus        77 D~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~-~~~vi~~~Np~~~~~~~~~~~-~~~~~~~vig~~~~l~~  154 (319)
T 1lld_A           77 DMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAP-NAIYMLITNPVDIATHVAQKL-TGLPENQIFGSGTNLDS  154 (319)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSHHHHHHHHHHH-HTCCTTSEEECTTHHHH
T ss_pred             CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CceEEEecCchHHHHHHHHHh-cCCCHHHEeeccccHhH
Confidence            9999999999999999999999999999999999999975 788999999999999998876 67888886 55699999


Q ss_pred             HHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccc------hhHHHHHHHhHHHHH
Q 022227          162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWL------NGEFITTVQQRGAAI  235 (300)
Q Consensus       162 ~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~------~~~~~~~v~~~~~~i  235 (300)
                      .|++..+++++++++.+++.++ ||+||++++|+||++.+    ++.|+.+++....|.      .+++.+++++.+++|
T Consensus       155 ~r~~~~~a~~~~v~~~~v~~~~-~G~~g~~~~~~w~k~~i----n~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v  229 (319)
T 1lld_A          155 ARLRFLIAQQTGVNVKNVHAYI-AGEHGDSEVPLWESATI----GGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKI  229 (319)
T ss_dssp             HHHHHHHHHHHTCCGGGEECCE-EBSSSTTCEECTTSCEE----TTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHeEEEE-EeCCCCceeeeeecceE----CCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhh
Confidence            9999999999999999999875 99999999999999999    889998876432322      357888999999999


Q ss_pred             HhcCCccccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeeeec
Q 022227          236 IKARKLSSALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIVGH  292 (300)
Q Consensus       236 ~~~kg~t~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~~  292 (300)
                      ++.+|.+. ++.+.+.++++++|..+.        +..|.|+. .+.++|+||.+  +++|..++..
T Consensus       230 ~~~~G~~~-~~~a~~~~sm~~di~~~~~~ei~~s~~~~G~~~~-~~~~~gvp~~~~~~Gv~~i~~~~  294 (319)
T 1lld_A          230 INGKGATN-YAIGMSGVDIIEAVLHDTNRILPVSSMLKDFHGI-SDICMSVPTLLNRQGVNNTINTP  294 (319)
T ss_dssp             HTSCCSCC-HHHHHHHHHHHHHHHTTCCEEEEEEEECSSBTTB-CSSEEEEEEEEETTEEECCSCCC
T ss_pred             hhCCCCch-HHHHHHHHHHHHHHHcCCCcEEEEEEEecCcCCc-cceEEEEEEEEeCCeeEEEcCCC
Confidence            99999655 467788899999887553        33489988 79999999999  5788776643

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=3.6e-36  Score=287.75  Aligned_cols=279  Identities=15%  Similarity=0.128  Sum_probs=201.4

Q ss_pred             CCCCCcEEEEEcCCChH-HHHHHHHHHh--cccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc---cCCcccEEEeCC
Q 022227            1 MAKEPVRVLVTGAAGQI-GYALVPMIAR--GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA---FPLLKGVVATTD   74 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~v-G~~la~~L~~--~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~---~~~~~~v~~~~~   74 (300)
                      |++ ++||+|+| +|++ |..++..|+.  .++-.    .+|+|+|+++..+++++. .|+.+..   .....+++.++|
T Consensus         4 m~~-~~KIaVIG-aGsv~~~al~~~L~~~~~~l~~----~ev~L~Di~~~~e~~~~~-~~~~~~~~~~~~~~~~i~~t~D   76 (450)
T 1s6y_A            4 MDK-RLKIATIG-GGSSYTPELVEGLIKRYHELPV----GELWLVDIPEGKEKLEIV-GALAKRMVEKAGVPIEIHLTLD   76 (450)
T ss_dssp             ----CEEEEEET-TTCTTHHHHHHHHHHTTTTCCE----EEEEEECCGGGHHHHHHH-HHHHHHHHHHTTCCCEEEEESC
T ss_pred             ccC-CCEEEEEC-CCHHHHHHHHHHHHcCCCCCCC----CEEEEEEcCCChHHHHHH-HHHHHHHHhhcCCCcEEEEeCC
Confidence            433 68999999 5877 7777777776  33301    289999996422677763 3554432   123456777888


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCCCcHHHH--------------------HHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           75 AVEACTGVNIAVMVGGFPRKEGMERKDV--------------------MSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~g~~r~dl--------------------~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                      .++|++|||+||++++.+++++++|.++                    ..+|+++++++++.|+++|| ++++|++|||+
T Consensus        77 ~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P-~a~ii~~tNPv  155 (450)
T 1s6y_A           77 RRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCP-DAWLINFTNPA  155 (450)
T ss_dssp             HHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSH
T ss_pred             HHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCC-CeEEEEeCCcH
Confidence            8899999999999999999988888644                    78999999999999999997 79999999999


Q ss_pred             hhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEec-----------CCCCceeeeccceeee-
Q 022227          135 NTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG-----------NHSSSQYPDVNHATVN-  202 (300)
Q Consensus       135 ~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G-----------~hg~~~~p~~s~a~v~-  202 (300)
                      |++|+++++..   |++|+.|.|... .|+++.+|+.+|+++++|+.++ +|           +||++++|.||...+. 
T Consensus       156 divT~a~~k~~---p~~rViG~c~~~-~r~~~~la~~lgv~~~~v~~~v-~GlNH~~w~~~v~~~G~d~~p~~~~~~~~~  230 (450)
T 1s6y_A          156 GMVTEAVLRYT---KQEKVVGLCNVP-IGMRMGVAKLLGVDADRVHIDF-AGLNHMVFGLHVYLDGVEVTEKVIDLVAHP  230 (450)
T ss_dssp             HHHHHHHHHHC---CCCCEEECCSHH-HHHHHHHHHHHTSCGGGEEEEE-EEETTEEEEEEEEETTEECHHHHHHHHSCC
T ss_pred             HHHHHHHHHhC---CCCCEEEeCCcH-HHHHHHHHHHhCCCHHHcEEEE-EeeecceeEEEeeeCCcCchHhHHHHHhhh
Confidence            99999999983   766776666654 4999999999999999999886 89           9999999999986541 


Q ss_pred             ---c--cC--CCcchh-hhh-----------c-----cc---cc--------chhHHHHHHHhHHHHHH-----hcCC--
Q 022227          203 ---T--AA--GEKPVR-ELV-----------K-----DD---AW--------LNGEFITTVQQRGAAII-----KARK--  240 (300)
Q Consensus       203 ---~--~~--~g~p~~-~~~-----------~-----~~---~~--------~~~~~~~~v~~~~~~i~-----~~kg--  240 (300)
                         .  .+  .+.|+. +++           .     ++   +|        .+.++.+++++++++|+     +.|+  
T Consensus       231 ~~~g~~~~~~~~~~~~~~~~~~~g~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~~~~~~~k~~~  310 (450)
T 1s6y_A          231 DRSGVTMKNIVDLGWEPDFLKGLKVLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQ  310 (450)
T ss_dssp             ------------CCCCHHHHHHHCSBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC--------
T ss_pred             ccccccccccccCccHHHHHHhcCCccchhhhhhcCCHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhccccccch
Confidence               0  00  013442 111           0     11   00        12356778889999999     5554  


Q ss_pred             ---ccccchHHHHHHHHHhhhhc--------cCCCcccc-CCCCCeEEEEeEEE--CCeeeeeeecc
Q 022227          241 ---LSSALSAASSACDHIRDWVL--------GTPEVGSL-LIFTPMIYTELVSW--LEPWTAIVGHL  293 (300)
Q Consensus       241 ---~t~~~s~a~ai~~~~~~~~~--------~t~~~g~y-gi~~~v~~s~Pv~~--~~~~~~~~~~~  293 (300)
                         .+++ ..+.++++++++++.        +++..|.| |+|+|+++++||++  +++-..++..|
T Consensus       311 ~~~~~~~-~~~~~a~~ii~AI~~d~~~~~~vsv~n~G~i~~lp~d~~vevP~vvg~~Gi~~i~~~~L  376 (450)
T 1s6y_A          311 LEKRGGA-YYSDAACSLISSIYNDKRDIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAVGDL  376 (450)
T ss_dssp             ---CCSC-CHHHHHHHHHHHHHHTCCCEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCBCC
T ss_pred             hhcccch-HHHHHHHHHHHHHHcCCCeEEEEEeecCceecCCCCCeEEEEeEEEcCCCeEEeecCCC
Confidence               3332 445667777766654        44556998 79999999999999  46655555544

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=100.00  E-value=1.4e-35  Score=281.23  Aligned_cols=269  Identities=14%  Similarity=0.115  Sum_probs=196.4

Q ss_pred             CcEEEEEcCCChH-HHHHHHHHHh--ccc-CCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            5 PVRVLVTGAAGQI-GYALVPMIAR--GVM-LGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         5 ~~kV~IiGAaG~v-G~~la~~L~~--~~~-~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      ++||+|+|| |++ +..++..|+.  .++ .+     ||+|+|++  ++++++ +.|+.+.......+++.++|.++|++
T Consensus         2 ~~KI~IIGa-G~v~~~~l~~~l~~~~~~l~~~-----el~L~Di~--~~~~~~-~~~~~~~~~~~~~~v~~t~d~~~al~   72 (417)
T 1up7_A            2 HMRIAVIGG-GSSYTPELVKGLLDISEDVRID-----EVIFYDID--EEKQKI-VVDFVKRLVKDRFKVLISDTFEGAVV   72 (417)
T ss_dssp             CCEEEEETT-TCTTHHHHHHHHHHHTTTSCCC-----EEEEECSC--HHHHHH-HHHHHHHHHTTSSEEEECSSHHHHHT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHhcccCCCcC-----EEEEEeCC--HHHHHH-HHHHHHHHhhCCeEEEEeCCHHHHhC
Confidence            579999995 765 3333345565  444 23     89999997  467775 66776643221156666778789999


Q ss_pred             CCcEEEEeCCCCCCCCCcHHH--------------------HHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH
Q 022227           81 GVNIAVMVGGFPRKEGMERKD--------------------VMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g~~r~d--------------------l~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                      |||+||+++|++++++++|.+                    +..+|+++++++++.|+++|  ++|+|++|||+|++|++
T Consensus        73 ~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~--~A~lin~TNPvdi~t~a  150 (417)
T 1up7_A           73 DAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS--NATIVNFTNPSGHITEF  150 (417)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT--CCEEEECSSSHHHHHHH
T ss_pred             CCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC--CEEEEEeCChHHHHHHH
Confidence            999999999999988888743                    25899999999999999999  58999999999999999


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEec-----------CCCCceeeeccce---eeeccCC
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG-----------NHSSSQYPDVNHA---TVNTAAG  206 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G-----------~hg~~~~p~~s~a---~v~~~~~  206 (300)
                      +++. +  |++|+.|.|..- .|+++.+|+.+|+++++|+.++ +|           +||++++|.||..   ++... .
T Consensus       151 ~~k~-~--p~~rviG~c~~~-~r~~~~la~~lgv~~~~v~~~v-~GlNH~~w~~~~~~hG~d~~p~~~~~~~~~~~~~-~  224 (417)
T 1up7_A          151 VRNY-L--EYEKFIGLCNVP-INFIREIAEMFSARLEDVFLKY-YGLNHLSFIEKVFVKGEDVTEKVFENLKLKLSNI-P  224 (417)
T ss_dssp             HHHT-T--CCSSEEECCSHH-HHHHHHHHHHTTCCGGGEEEEE-EEETTEEEEEEEEETTEECHHHHHHHHTTC---C-C
T ss_pred             HHHh-C--CCCCEEEeCCCH-HHHHHHHHHHhCCCHHHCeEEE-EeecceeeEEEeecCCcEehhhHHHHHHHhhCCC-c
Confidence            9997 3  766766665443 4999999999999999999886 89           9999999999997   55110 2


Q ss_pred             Ccch-hhhhc----------------ccc---c----chhHHHHHHHhHHHHHH----------hcCCccccchHHHHHH
Q 022227          207 EKPV-RELVK----------------DDA---W----LNGEFITTVQQRGAAII----------KARKLSSALSAASSAC  252 (300)
Q Consensus       207 g~p~-~~~~~----------------~~~---~----~~~~~~~~v~~~~~~i~----------~~kg~t~~~s~a~ai~  252 (300)
                      +.|+ .++++                ++.   +    .+.+..+++++.+++++          +.||.+   ..+.+++
T Consensus       225 ~~~~~~~~~~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l~~kg~t---~~~~~a~  301 (417)
T 1up7_A          225 DEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGGS---MYSTAAA  301 (417)
T ss_dssp             TTSCCHHHHHHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGGGSTTT---THHHHHH
T ss_pred             CCchHHHHHHhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhhhhcCCc---HHHHHHH
Confidence            3677 24321                110   0    01223577888899999          345543   2355666


Q ss_pred             HHHhhhhc--------cCCCcccc-CCCCCeEEEEeEEE--CCeeeeeeecc
Q 022227          253 DHIRDWVL--------GTPEVGSL-LIFTPMIYTELVSW--LEPWTAIVGHL  293 (300)
Q Consensus       253 ~~~~~~~~--------~t~~~g~y-gi~~~v~~s~Pv~~--~~~~~~~~~~~  293 (300)
                      +++++++.        +++..|.| |+|+|+++++||++  +++-..++..|
T Consensus       302 ~ii~AI~~d~~~~~~vsv~n~G~i~~lp~d~~vevP~~vg~~Gi~~i~~~~L  353 (417)
T 1up7_A          302 HLIRDLETDEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKG  353 (417)
T ss_dssp             HHHHHHHSSSCEEEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEBCCCCC
T ss_pred             HHHHHHHcCCCeEEEEEEecCCccCCCCCCeEEEEeEEEeCCceEEeecCCC
Confidence            66666554        44556999 79999999999999  45555444443

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=3.3e-34  Score=275.33  Aligned_cols=279  Identities=15%  Similarity=0.147  Sum_probs=193.8

Q ss_pred             CCCCCcEEEEEcCCChH-HHHHHHHHHhc--ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEeCC
Q 022227            1 MAKEPVRVLVTGAAGQI-GYALVPMIARG--VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTD   74 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~v-G~~la~~L~~~--~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~~   74 (300)
                      |.|+++||+|+| +|++ +..++..|+..  ++-+    .+|+|+|++  ++++++. .|+.+...   ....+++.++|
T Consensus        24 m~m~~~KIaVIG-aGsv~~~ala~~L~~~~~~l~~----~eV~L~Di~--~e~~~~~-~~~~~~~l~~~~~~~~I~~t~D   95 (472)
T 1u8x_X           24 MKKKSFSIVIAG-GGSTFTPGIVLMLLDHLEEFPI----RKLKLYDND--KERQDRI-AGACDVFIREKAPDIEFAATTD   95 (472)
T ss_dssp             --CCCEEEEEEC-TTSSSHHHHHHHHHHTTTTSCE----EEEEEECSC--HHHHHHH-HHHHHHHHHHHCTTSEEEEESC
T ss_pred             cccCCCEEEEEC-CCHHHHHHHHHHHHhCCCCCCC----CEEEEEeCC--HHHHHHH-HHHHHHHhccCCCCCEEEEECC
Confidence            334567999999 5887 55577778776  4311    289999997  4677764 46655331   23457788888


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCCCcHHHH--------------------HHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           75 AVEACTGVNIAVMVGGFPRKEGMERKDV--------------------MSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~g~~r~dl--------------------~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                      .++|++|||+||++++.+++++++|.++                    ..+|+++++++++.|+++|| ++++|++|||+
T Consensus        96 ~~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P-~A~ii~~TNPv  174 (472)
T 1u8x_X           96 PEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSP-DAWMLNYSNPA  174 (472)
T ss_dssp             HHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECCSCH
T ss_pred             HHHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCC-CeEEEEeCCcH
Confidence            8899999999999999998888888554                    78999999999999999997 79999999999


Q ss_pred             hhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCC-CCeEEEEEec-----------C-CCCceeeeccceee
Q 022227          135 NTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQV-SDVKNVIIWG-----------N-HSSSQYPDVNHATV  201 (300)
Q Consensus       135 ~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~-~~V~~~~V~G-----------~-hg~~~~p~~s~a~v  201 (300)
                      |++|+++++..   |++|+.|.|... .|+++.+|+.+|+++ ++|+.++ +|           + ||++++|.||...+
T Consensus       175 di~T~~~~k~~---p~~rViG~c~~~-~r~~~~la~~lgv~~~~~v~~~v-~GlNH~~W~~~~~~~hG~d~~p~~~~~~~  249 (472)
T 1u8x_X          175 AIVAEATRRLR---PNSKILNICDMP-VGIEDRMAQILGLSSRKEMKVRY-YGLNHFGWWTSIQDQEGNDLMPKLKEHVS  249 (472)
T ss_dssp             HHHHHHHHHHS---TTCCEEECCSHH-HHHHHHHHHHHTCSCGGGEEEEE-EEETTEEEEEEEEETTCCBCHHHHHHHHH
T ss_pred             HHHHHHHHHhC---CCCCEEEeCCcH-HHHHHHHHHHhCcCchhceeEEE-eccchhhheeeeEeCCCCEehHhHHHHHH
Confidence            99999999983   766776666554 399999999999998 9999886 89           8 99999999998654


Q ss_pred             e-c--cCC-----Ccchh-hhhc------------ccccc-----hhHHHH----------HHHh----HHHHHHh-c--
Q 022227          202 N-T--AAG-----EKPVR-ELVK------------DDAWL-----NGEFIT----------TVQQ----RGAAIIK-A--  238 (300)
Q Consensus       202 ~-~--~~~-----g~p~~-~~~~------------~~~~~-----~~~~~~----------~v~~----~~~~i~~-~--  238 (300)
                      . .  .++     ..|+. +++.            +.+|+     .+++.+          ++++    ..+++++ .  
T Consensus       250 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~Yl~yy~~~~~~~e~~~~~~~r~~~v~~~~~~~~~~~~~~~~~  329 (472)
T 1u8x_X          250 QYGYIPKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITR  329 (472)
T ss_dssp             HHSSCCCC-------CTTSHHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHHH
T ss_pred             hcCCCccccccccccchHHHHHhhcCccccccccCCccchhcccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh
Confidence            0 0  000     01221 2211            01111     012211          2222    2233333 3  


Q ss_pred             CCc--cccc---hHHHHHHHHHhhhhc--------cCCCcccc-CCCCCeEEEEeEEE--CCeeeeeeecc
Q 022227          239 RKL--SSAL---SAASSACDHIRDWVL--------GTPEVGSL-LIFTPMIYTELVSW--LEPWTAIVGHL  293 (300)
Q Consensus       239 kg~--t~~~---s~a~ai~~~~~~~~~--------~t~~~g~y-gi~~~v~~s~Pv~~--~~~~~~~~~~~  293 (300)
                      ++.  ...+   ..+.++++++++++.        +++..|.| |+|+|+++|+||++  +++-..+++.|
T Consensus       330 ~~~~~~~~~~~~~~~~~a~~ii~AI~~d~~~v~~vsv~n~G~i~glp~d~~veVP~vvg~~Gi~pi~~~~L  400 (472)
T 1u8x_X          330 EQSSENSEIKIDDHASYIVDLARAIAYNTGERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITVGTI  400 (472)
T ss_dssp             HTSCCSCSSCCCTTTHHHHHHHHHHHHTCCEEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCBCC
T ss_pred             cCCcccccccccHHHHHHHHHHHHHhcCCCeEEEEEeecCceecCcCCCeEEEEeEEEcCCCceEeecCCC
Confidence            441  1112   455666777666554        45556998 79999999999999  46655555444

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=99.96  E-value=2.6e-27  Score=225.77  Aligned_cols=188  Identities=15%  Similarity=0.187  Sum_probs=148.6

Q ss_pred             CCCCCcEEEEEcCCChH--HHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhh--hhhhhhhccCCcccEEEeCChh
Q 022227            1 MAKEPVRVLVTGAAGQI--GYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGV--KMELVDAAFPLLKGVVATTDAV   76 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~v--G~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~--~~dl~~~~~~~~~~v~~~~~~~   76 (300)
                      |+|+.+||+|+| +|++  |..++..|+....+   .. +|+|+|+++  ++++..  ..+...   ....+++.++|.+
T Consensus         1 m~m~~~KIaVIG-aGs~g~g~~la~~l~~~~~~---~g-eV~L~Di~~--e~le~~~~~~~~l~---~~~~~I~~TtD~~   70 (450)
T 3fef_A            1 MSLDQIKIAYIG-GGSQGWARSLMSDLSIDERM---SG-TVALYDLDF--EAAQKNEVIGNHSG---NGRWRYEAVSTLK   70 (450)
T ss_dssp             --CCCEEEEEET-TTCSSHHHHHHHHHHHCSSC---CE-EEEEECSSH--HHHHHHHHHHTTST---TSCEEEEEESSHH
T ss_pred             CCCCCCEEEEEC-CChhHhHHHHHHHHHhcccc---CC-eEEEEeCCH--HHHHHHHHHHHHHh---ccCCeEEEECCHH
Confidence            778889999999 6997  46777777754321   12 899999974  444321  122111   1345788899999


Q ss_pred             hhcCCCcEEEEeCC------------CCCCCCCcHH--HHHH--------hhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           77 EACTGVNIAVMVGG------------FPRKEGMERK--DVMS--------KNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        77 ~a~~~aDvVi~~ag------------~~~~~g~~r~--dl~~--------~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                      +|++|||+||+++.            +|+|+|+.|.  |...        +|+++++++++.|+++|| ++++|++|||+
T Consensus        71 eAl~dADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p-~a~~i~~tNPv  149 (450)
T 3fef_A           71 KALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAP-ESWVINYTNPM  149 (450)
T ss_dssp             HHHTTCSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSH
T ss_pred             HHhcCCCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCC-CeEEEEecCch
Confidence            99999999999985            5888888766  5544        999999999999999997 79999999999


Q ss_pred             hhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHc----C---CCCCCeEEEEEec-CCCCceeeeccceeeeccCC
Q 022227          135 NTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKL----N---VQVSDVKNVIIWG-NHSSSQYPDVNHATVNTAAG  206 (300)
Q Consensus       135 ~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l----~---v~~~~V~~~~V~G-~hg~~~~p~~s~a~v~~~~~  206 (300)
                      |++|+++++.   +|+.++.|.|... .++++.+|+.+    |   +++++|+..+ .| ||    +.+|+++++    +
T Consensus       150 di~t~~~~k~---~p~~rviG~C~~~-~~~~~~~a~~l~~~lg~~~~~~~~v~~~~-~GlNH----~~w~~~~~~----~  216 (450)
T 3fef_A          150 SVCTRVLYKV---FPGIKAIGCCHEV-FGTQKLLAEMVTERLGIEVPRREDIRVNV-LGINH----FTWITKASY----R  216 (450)
T ss_dssp             HHHHHHHHHH---CTTCEEEECCSHH-HHHHHHHHHHHHHHHCCCCSCGGGEEEEE-EEETT----EEEEEEEEE----T
T ss_pred             HHHHHHHHHH---CCCCCEEEeCCcH-HHHHHHHHHHHHhhcCCCCCChhHeEEEE-eeecC----eEeEEEEEE----C
Confidence            9999999987   4777888999876 68999999999    5   7799999775 89 99    999999998    7


Q ss_pred             Ccchhh
Q 022227          207 EKPVRE  212 (300)
Q Consensus       207 g~p~~~  212 (300)
                      |+++..
T Consensus       217 G~d~~p  222 (450)
T 3fef_A          217 HIDLLP  222 (450)
T ss_dssp             TEEHHH
T ss_pred             CEEChH
Confidence            877765

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=99.92  E-value=1.2e-23  Score=202.56  Aligned_cols=180  Identities=20%  Similarity=0.194  Sum_probs=135.6

Q ss_pred             cEEEEEcCCChHHHHH--HHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC--CcccEEEeCChhhhcCC
Q 022227            6 VRVLVTGAAGQIGYAL--VPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEACTG   81 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~l--a~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~--~~~~v~~~~~~~~a~~~   81 (300)
                      |||+||| +|++|++.  ...|+....+. ....+|+|+|++  ++++++...++.+....  ...+++.++|.++|++|
T Consensus         1 mKI~iIG-aGs~~~t~~l~~~~~~~~~l~-~~~~ei~L~Di~--~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~g   76 (477)
T 3u95_A            1 MKISIVG-AGSVRFALQLVEDIAQTDELS-REDTHIYLMDVH--ERRLNASYILARKYVEELNSPVKVVKTESLDEAIEG   76 (477)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTCTTTC-STTCEEEEECSC--HHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTT
T ss_pred             CEEEEEC-CCchhhHHHHHHHHHhhHhcC-CCCCEEEEECCC--HHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCC
Confidence            5999999 69998763  33344433221 012389999997  57888888888775432  34578889999999999


Q ss_pred             CcEEEEeCCC-------------------CCCCCCcHHHHH---------------HhhHHHHHHHHHHHhhhcCCCeEE
Q 022227           82 VNIAVMVGGF-------------------PRKEGMERKDVM---------------SKNVSIYKAQASALEQHAAPNCKV  127 (300)
Q Consensus        82 aDvVi~~ag~-------------------~~~~g~~r~dl~---------------~~N~~i~~~i~~~i~~~~~~~~~v  127 (300)
                      |||||+++|.                   |+|+|++|.++.               .+|++++.++++.|+++|| ++|+
T Consensus        77 AD~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P-~A~~  155 (477)
T 3u95_A           77 ADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAP-KAYL  155 (477)
T ss_dssp             CSEEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCT-TCEE
T ss_pred             CCEEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCC-CeEE
Confidence            9999999975                   346676665542               2589999999999999997 8999


Q ss_pred             EEecCchhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEec-CCCCceeeeccceee
Q 022227          128 LVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG-NHSSSQYPDVNHATV  201 (300)
Q Consensus       128 iv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G-~hg~~~~p~~s~a~v  201 (300)
                      |++|||++++|+.++++ ++   .++.|.|.--  +....+++.+|+++++|+..+ .| ||    +.++...+.
T Consensus       156 in~tNP~~i~t~a~~~~-~~---~k~vGlC~~~--~~~~~~~~~Lg~~~~~v~~~~-~GlNH----~~w~~~~~~  219 (477)
T 3u95_A          156 MQTANPVFEITQAVRRW-TG---ANIIGFCHGV--AGVYEVFERLGLDPEEVDWQV-AGVNH----GIWLNRFRY  219 (477)
T ss_dssp             EECSSCHHHHHHHHHHH-HC---CCEEEECCGG--GHHHHHHHHTTCCGGGEEEEE-EEETT----EEEEEEEEE
T ss_pred             EEecChHHHHHHHHHHh-CC---CCeEEECCCH--HHHHHHHHHhCCCHHHcEEEE-eecCC----Ceeeeeeee
Confidence            99999999999999987 55   3577888644  334567888999999999765 78 55    555555555

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=99.91  E-value=9.6e-24  Score=202.62  Aligned_cols=178  Identities=16%  Similarity=0.182  Sum_probs=134.8

Q ss_pred             CCcEEEEEcCCChHHH--HHHHHHHh-cccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc---cCCcccEEEeCChhh
Q 022227            4 EPVRVLVTGAAGQIGY--ALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA---FPLLKGVVATTDAVE   77 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~--~la~~L~~-~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~---~~~~~~v~~~~~~~~   77 (300)
                      +++||+|+| +|+||+  +++..|+. .++.+    .+|+|+|++  ++++++. .++.+..   .....+++.++|.++
T Consensus         2 ~~~KIaVIG-AGsVg~g~ala~~La~~~~l~~----~eV~L~Di~--~e~l~~~-~~~~~~~l~~~~~~~~I~~ttD~~e   73 (480)
T 1obb_A            2 PSVKIGIIG-AGSAVFSLRLVSDLCKTPGLSG----STVTLMDID--EERLDAI-LTIAKKYVEEVGADLKFEKTMNLDD   73 (480)
T ss_dssp             CCCEEEEET-TTCHHHHHHHHHHHHTCGGGTT----CEEEEECSC--HHHHHHH-HHHHHHHHHHTTCCCEEEEESCHHH
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHhcCcCCC----CEEEEEeCC--HHHHHHH-HHHHHHHhccCCCCcEEEEECCHHH
Confidence            357999999 699854  44667764 23212    189999997  4667653 3333322   123457888888889


Q ss_pred             hcCCCcEEEEeCCC------------CCCCCCcH--HH------------HHHhhHHHHHHHHHHHhhhcCCCeEEEEec
Q 022227           78 ACTGVNIAVMVGGF------------PRKEGMER--KD------------VMSKNVSIYKAQASALEQHAAPNCKVLVVA  131 (300)
Q Consensus        78 a~~~aDvVi~~ag~------------~~~~g~~r--~d------------l~~~N~~i~~~i~~~i~~~~~~~~~viv~s  131 (300)
                      |++|||+||++++.            |+++|+.|  .+            ++.+|+++++++++.|+++|| ++++|++|
T Consensus        74 al~dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P-~A~ii~~T  152 (480)
T 1obb_A           74 VIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSP-KAWYLQAA  152 (480)
T ss_dssp             HHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCT-TCEEEECS
T ss_pred             HhCCCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCC-CeEEEEeC
Confidence            99999999999986            44556544  33            377999999999999999997 79999999


Q ss_pred             CchhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEec-CCCCceeeeccceee
Q 022227          132 NPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG-NHSSSQYPDVNHATV  201 (300)
Q Consensus       132 NP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G-~hg~~~~p~~s~a~v  201 (300)
                      ||++++|++++++    |++++.|.|.++. ++++.+ +.+|+++++|+.++ +| ||    +.+|++.+.
T Consensus       153 NPvdi~t~~~~k~----p~~rviG~c~~~~-~~~~~l-~~lgv~~~~v~~~v-~GlNH----~~w~~~~~~  212 (480)
T 1obb_A          153 NPIFEGTTLVTRT----VPIKAVGFCHGHY-GVMEIV-EKLGLEEEKVDWQV-AGVNH----GIWLNRFRY  212 (480)
T ss_dssp             SCHHHHHHHHHHH----SCSEEEEECSGGG-HHHHHH-HHTTCCGGGEEEEE-EEETT----EEEEEEEEE
T ss_pred             CcHHHHHHHHHHC----CCCcEEecCCCHH-HHHHHH-HHhCCCHHHceEEE-Eeecc----hhhhhheee
Confidence            9999999999885    5667655554443 478999 99999999999886 78 65    788888876

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=99.18  E-value=6.6e-11  Score=108.30  Aligned_cols=160  Identities=17%  Similarity=0.158  Sum_probs=109.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +.+||+||||+|++|++++..|+..|.       +|+.+|+.+....++-...|+.+..           +..++++++|
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~Dl~d~~-----------~~~~~~~~~d   79 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGR-------TVRGFDLRPSGTGGEEVVGSLEDGQ-----------ALSDAIMGVS   79 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTC-------CEEEEESSCCSSCCSEEESCTTCHH-----------HHHHHHTTCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCC-------EEEEEeCCCCCCCccEEecCcCCHH-----------HHHHHHhCCC
Confidence            457899999999999999999998874       6888888643222222334554433           4567788999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH------HHHHHCCCCCCCcEEeee
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL------ILKEFAPSIPAKNITCLT  157 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~------~~~~~~~~~p~~~i~~~t  157 (300)
                      +|||+|+..........+.+..|+....++++.+.+.+. . ++|++|... +...      .+.+. ...++...++.+
T Consensus        80 ~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~-~-~~V~~SS~~-vyg~~~~~~~~~~E~-~~~~~~~~Y~~s  155 (347)
T 4id9_A           80 AVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGV-R-RFVFASSGE-VYPENRPEFLPVTED-HPLCPNSPYGLT  155 (347)
T ss_dssp             EEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTC-S-EEEEEEEGG-GTTTTSCSSSSBCTT-SCCCCCSHHHHH
T ss_pred             EEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCC-C-eEEEECCHH-HhCCCCCCCCCcCCC-CCCCCCChHHHH
Confidence            999999876544334467788999999999999988753 2 566666521 1000      00000 011223456778


Q ss_pred             hhhHHHHHHHHHHHcCCCCCCeEEEEEe
Q 022227          158 RLDHNRALGQISEKLNVQVSDVKNVIIW  185 (300)
Q Consensus       158 ~ld~~R~~~~la~~l~v~~~~V~~~~V~  185 (300)
                      +...+++...+++..+++..-++...|+
T Consensus       156 K~~~E~~~~~~~~~~~~~~~ilRp~~v~  183 (347)
T 4id9_A          156 KLLGEELVRFHQRSGAMETVILRFSHTQ  183 (347)
T ss_dssp             HHHHHHHHHHHHHHSSSEEEEEEECEEE
T ss_pred             HHHHHHHHHHHHHhcCCceEEEccceEe
Confidence            8888888888888889888888888888

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=99.14  E-value=4.1e-11  Score=109.87  Aligned_cols=175  Identities=13%  Similarity=0.061  Sum_probs=109.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh-------cc-CCcccEEEeCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-------AF-PLLKGVVATTD   74 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~-------~~-~~~~~v~~~~~   74 (300)
                      ++++||+||||+|++|++++..|+..|.       +|+.+++....  ......++...       .. ....++.-..+
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~   93 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQ-------VVIGLDNFSTG--HQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTT   93 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSC--CHHHHHHHHHTSCHHHHTTEEEEECCTTCHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCCCC--chhhhhhhhhccccccCCceEEEEccCCCHHH
Confidence            4568999999999999999999998874       78888875421  11111111110       00 00011111113


Q ss_pred             hhhhcCCCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCC
Q 022227           75 AVEACTGVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSI  148 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~  148 (300)
                      ..++++++|+||++|+.....  ..+..+....|+....++++++.+.+. . ++|.+|...- ...    .+.+..+ .
T Consensus        94 ~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~-~-~~v~~SS~~v-yg~~~~~~~~E~~~-~  169 (351)
T 3ruf_A           94 CEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV-Q-SFTYAASSST-YGDHPALPKVEENI-G  169 (351)
T ss_dssp             HHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-S-EEEEEEEGGG-GTTCCCSSBCTTCC-C
T ss_pred             HHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCC-C-EEEEEecHHh-cCCCCCCCCccCCC-C
Confidence            567788999999999864311  123456778899999999999998753 2 5666664321 100    0000000 1


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                      .+...++.++...+++...+++..|++..-++...|+|....
T Consensus       170 ~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~  211 (351)
T 3ruf_A          170 NPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQD  211 (351)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCC
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCC
Confidence            112356778888888888888888999999998888896543

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=99.13  E-value=3.2e-10  Score=103.33  Aligned_cols=169  Identities=13%  Similarity=0.072  Sum_probs=99.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-CCcccEEEeCChhhhcCCCc
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +|||+||||+|++|++++..|+..|.       +|+++++++.  +++.    +.+... ....++.-..+..++++++|
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~~----l~~~~~~~~~~Dl~d~~~~~~~~~~~d   79 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGH-------DLVLIHRPSS--QIQR----LAYLEPECRVAEMLDHAGLERALRGLD   79 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEECTTS--CGGG----GGGGCCEEEECCTTCHHHHHHHTTTCS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEecChH--hhhh----hccCCeEEEEecCCCHHHHHHHHcCCC
Confidence            46999999999999999999998764       7888888642  2211    111000 00001100113456788999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH--H--HHHHHCCCCCC---CcEEee
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA--L--ILKEFAPSIPA---KNITCL  156 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~--~--~~~~~~~~~p~---~~i~~~  156 (300)
                      +|||+|+.......+..+.+..|+....++++++.+.+.  .++|.+|.....-.  .  ...+..+..|.   ...++.
T Consensus        80 ~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~~v~~SS~~~~~~~~~~~~~~E~~~~~p~~~~~~~Y~~  157 (342)
T 2x4g_A           80 GVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARV--PRILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVL  157 (342)
T ss_dssp             EEEEC------------CHHHHHHHHHHHHHHHHHHHTC--SCEEEECCGGGSCCCTTSSCBCTTCCCSSCCTTSCHHHH
T ss_pred             EEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--CeEEEECCHHhhCcCCCCCCCCCCCCCCccccccChHHH
Confidence            999999865422234456788999999999999998753  25677665432100  0  00010000010   234666


Q ss_pred             ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       157 t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ++...+++...+++. |++..-++...|+|...
T Consensus       158 sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~  189 (342)
T 2x4g_A          158 CKWALDEQAREQARN-GLPVVIGIPGMVLGELD  189 (342)
T ss_dssp             HHHHHHHHHHHHHHT-TCCEEEEEECEEECSCC
T ss_pred             HHHHHHHHHHHHhhc-CCcEEEEeCCceECCCC
Confidence            777777777777776 88888888888888654

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=99.12  E-value=1.5e-09  Score=98.92  Aligned_cols=180  Identities=13%  Similarity=0.109  Sum_probs=102.5

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch-hhhhhhhhhhhh--hcc-CCcccEEEeCChh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-EALNGVKMELVD--AAF-PLLKGVVATTDAV   76 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~-~~l~g~~~dl~~--~~~-~~~~~v~~~~~~~   76 (300)
                      |..+.++|+||||+||||++++..|++.|.       +|+.++++... +++... .++..  ... ....++.-..+..
T Consensus         1 ~~~~~~~vlVTGatGfIG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~   72 (337)
T 2c29_D            1 MGSQSETVCVTGASGFIGSWLVMRLLERGY-------TVRATVRDPTNVKKVKHL-LDLPKAETHLTLWKADLADEGSFD   72 (337)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCTTCHHHHHHH-HTSTTHHHHEEEEECCTTSTTTTH
T ss_pred             CCCCCCEEEEECCchHHHHHHHHHHHHCCC-------EEEEEECCcchhHHHHHH-HhcccCCCeEEEEEcCCCCHHHHH
Confidence            666778999999999999999999998875       67766654311 111100 01110  000 0001111112456


Q ss_pred             hhcCCCcEEEEeCCCCCCCCCcH-HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH-----HHHHHCC----
Q 022227           77 EACTGVNIAVMVGGFPRKEGMER-KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL-----ILKEFAP----  146 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~g~~r-~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~-----~~~~~~~----  146 (300)
                      ++++++|+|||+|+.......+. .+++..|+....++++++.+... -.++|++|........     ...+..+    
T Consensus        73 ~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~-~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~  151 (337)
T 2c29_D           73 EAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKT-VRRLVFTSSAGTVNIQEHQLPVYDESCWSDME  151 (337)
T ss_dssp             HHHTTCSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSC-CCEEEEECCGGGTSCSSSCCSEECTTCCCCHH
T ss_pred             HHHcCCCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCC-ccEEEEeeeHhhcccCCCCCcccCcccCCchh
Confidence            78899999999998653222232 35788899999999999988752 1256666654321000     0000000    


Q ss_pred             ----CCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          147 ----SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       147 ----~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                          ..++...++.++...+++...+++..|++..-++...|+|...
T Consensus       152 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~  198 (337)
T 2c29_D          152 FCRAKKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFI  198 (337)
T ss_dssp             HHHHHCCTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCS
T ss_pred             hhcccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCC
Confidence                0011123556666666666666777789888888888889753

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.08  E-value=1.5e-10  Score=99.63  Aligned_cols=160  Identities=14%  Similarity=0.171  Sum_probs=99.3

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh-------hhhhhhhhccCCcccEEEeC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG-------VKMELVDAAFPLLKGVVATT   73 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g-------~~~dl~~~~~~~~~~v~~~~   73 (300)
                      |++ ++||+|+||+|++|++++..|+..|.       +|+++++++  +++..       ...|+.+.           .
T Consensus         1 M~~-m~~ilItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~~Dl~d~-----------~   59 (227)
T 3dhn_A            1 MEK-VKKIVLIGASGFVGSALLNEALNRGF-------EVTAVVRHP--EKIKIENEHLKVKKADVSSL-----------D   59 (227)
T ss_dssp             --C-CCEEEEETCCHHHHHHHHHHHHTTTC-------EEEEECSCG--GGCCCCCTTEEEECCCTTCH-----------H
T ss_pred             CCC-CCEEEEEcCCchHHHHHHHHHHHCCC-------EEEEEEcCc--ccchhccCceEEEEecCCCH-----------H
Confidence            543 47999999999999999999998774       799999864  22221       11222222           1


Q ss_pred             ChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH--HHHHHCCCCCCC
Q 022227           74 DAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL--ILKEFAPSIPAK  151 (300)
Q Consensus        74 ~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~--~~~~~~~~~p~~  151 (300)
                      +..++++++|+||++||...    +..+++..|+...+++++.+.+.+. . ++|.+|.....-..  ...+..+..| .
T Consensus        60 ~~~~~~~~~d~vi~~a~~~~----~~~~~~~~n~~~~~~l~~~~~~~~~-~-~~v~~Ss~~~~~~~~~~~~~~~~~~p-~  132 (227)
T 3dhn_A           60 EVCEVCKGADAVISAFNPGW----NNPDIYDETIKVYLTIIDGVKKAGV-N-RFLMVGGAGSLFIAPGLRLMDSGEVP-E  132 (227)
T ss_dssp             HHHHHHTTCSEEEECCCC----------CCSHHHHHHHHHHHHHHHTTC-S-EEEEECCSTTSEEETTEEGGGTTCSC-G
T ss_pred             HHHHHhcCCCEEEEeCcCCC----CChhHHHHHHHHHHHHHHHHHHhCC-C-EEEEeCChhhccCCCCCccccCCcch-H
Confidence            45678899999999998652    1223567799999999999998753 2 56766653210000  0000001112 3


Q ss_pred             cEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          152 NITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       152 ~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      ..++.++...+++...+++..+++..-++...|+|..
T Consensus       133 ~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~  169 (227)
T 3dhn_A          133 NILPGVKALGEFYLNFLMKEKEIDWVFFSPAADMRPG  169 (227)
T ss_dssp             GGHHHHHHHHHHHHHTGGGCCSSEEEEEECCSEEESC
T ss_pred             HHHHHHHHHHHHHHHHHhhccCccEEEEeCCcccCCC
Confidence            3556667766666677776677777777766667754

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=99.08  E-value=3.6e-10  Score=100.20  Aligned_cols=162  Identities=18%  Similarity=0.171  Sum_probs=107.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchh---hhhhhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE---ALNGVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~---~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      +++|.||||+|+||++++..|+..|.       +|++.|+++...   .......|+.+..           +..+++++
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~Dl~d~~-----------~~~~~~~~   64 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE-------ILRLADLSPLDPAGPNEECVQCDLADAN-----------AVNAMVAG   64 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE-------EEEEEESSCCCCCCTTEEEEECCTTCHH-----------HHHHHHTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC-------EEEEEecCCccccCCCCEEEEcCCCCHH-----------HHHHHHcC
Confidence            35899999999999999999998774       789999864211   1111223443322           45667889


Q ss_pred             CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCCcEEeee
Q 022227           82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLT  157 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~~i~~~t  157 (300)
                      +|+||++||...  ..+..+++..|+.....+.+.+.+...  .++|++|+-...-.+    .+.+. ...++...++.+
T Consensus        65 ~D~vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~--~~iv~~SS~~~~g~~~~~~~~~e~-~~~~~~~~Y~~s  139 (267)
T 3rft_A           65 CDGIVHLGGISV--EKPFEQILQGNIIGLYNLYEAARAHGQ--PRIVFASSNHTIGYYPQTERLGPD-VPARPDGLYGVS  139 (267)
T ss_dssp             CSEEEECCSCCS--CCCHHHHHHHHTHHHHHHHHHHHHTTC--CEEEEEEEGGGGTTSBTTSCBCTT-SCCCCCSHHHHH
T ss_pred             CCEEEECCCCcC--cCCHHHHHHHHHHHHHHHHHHHHHcCC--CEEEEEcchHHhCCCCCCCCCCCC-CCCCCCChHHHH
Confidence            999999999853  233456788999999999999988753  367776643221000    00000 111223457778


Q ss_pred             hhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       158 ~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      +...+.+.+.+++++|++...|+.-.|.|..+
T Consensus       140 K~~~e~~~~~~a~~~g~~~~~vr~~~v~~~~~  171 (267)
T 3rft_A          140 KCFGENLARMYFDKFGQETALVRIGSCTPEPN  171 (267)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEECBCSSSCC
T ss_pred             HHHHHHHHHHHHHHhCCeEEEEEeecccCCCC
Confidence            88888888888989998877777555556544

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=99.07  E-value=7.8e-10  Score=102.86  Aligned_cols=167  Identities=13%  Similarity=0.108  Sum_probs=107.7

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhh-h-----hhhhhhhhhhccCCcccEEEeCCh
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA-L-----NGVKMELVDAAFPLLKGVVATTDA   75 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~-l-----~g~~~dl~~~~~~~~~~v~~~~~~   75 (300)
                      +.+++||+||||+|++|++++..|+..|.       +|+++|++..... +     +-...|+.+.           .+.
T Consensus        26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~-----------~~~   87 (379)
T 2c5a_A           26 PSENLKISITGAGGFIASHIARRLKHEGH-------YVIASDWKKNEHMTEDMFCDEFHLVDLRVM-----------ENC   87 (379)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCCSSSCGGGTCSEEEECCTTSH-----------HHH
T ss_pred             cccCCeEEEECCccHHHHHHHHHHHHCCC-------eEEEEECCCccchhhccCCceEEECCCCCH-----------HHH
Confidence            34567999999999999999999998764       7888887642110 0     0001122211           134


Q ss_pred             hhhcCCCcEEEEeCCCCCCC---CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH---------HHH
Q 022227           76 VEACTGVNIAVMVGGFPRKE---GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI---------LKE  143 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~~---g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~---------~~~  143 (300)
                      .++++++|+|||+|+.....   ..+..+.+..|+....++++.+.+... . ++|++|... +....         +.+
T Consensus        88 ~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~-~-~~V~~SS~~-v~~~~~~~~~~~~~~~E  164 (379)
T 2c5a_A           88 LKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGI-K-RFFYASSAC-IYPEFKQLETTNVSLKE  164 (379)
T ss_dssp             HHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTC-S-EEEEEEEGG-GSCGGGSSSSSSCEECG
T ss_pred             HHHhCCCCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCC-C-EEEEEeehh-eeCCCCCCCccCCCcCc
Confidence            56788999999999865321   234566788899999999999988643 2 566666532 11000         000


Q ss_pred             HCC-CCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          144 FAP-SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       144 ~~~-~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ..+ ..++...++.++...+++...+++..|++..-++...|+|...
T Consensus       165 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~  211 (379)
T 2c5a_A          165 SDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFG  211 (379)
T ss_dssp             GGGSSBCCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred             ccCCCCCCCChhHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCC
Confidence            000 1112234666777777777777788898888888777788654

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=99.06  E-value=5.1e-10  Score=102.32  Aligned_cols=179  Identities=13%  Similarity=0.086  Sum_probs=104.8

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhh-hccC-CcccEEEeCChhhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD-AAFP-LLKGVVATTDAVEA   78 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~-~~~~-~~~~v~~~~~~~~a   78 (300)
                      |++++|||+||||+|++|++++..|+..|.     ..+++.+|........... .++.. .... ...++.-.....++
T Consensus        20 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-----~~~v~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~Dl~d~~~~~~~   93 (346)
T 4egb_A           20 FQSNAMNILVTGGAGFIGSNFVHYMLQSYE-----TYKIINFDALTYSGNLNNV-KSIQDHPNYYFVKGEIQNGELLEHV   93 (346)
T ss_dssp             ----CEEEEEETTTSHHHHHHHHHHHHHCT-----TEEEEEEECCCTTCCGGGG-TTTTTCTTEEEEECCTTCHHHHHHH
T ss_pred             cccCCCeEEEECCccHHHHHHHHHHHhhCC-----CcEEEEEeccccccchhhh-hhhccCCCeEEEEcCCCCHHHHHHH
Confidence            345668999999999999999999998762     1267778764311111110 01100 0000 00011001124456


Q ss_pred             cCC--CcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH-----HHHHHCCCCC
Q 022227           79 CTG--VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL-----ILKEFAPSIP  149 (300)
Q Consensus        79 ~~~--aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~-----~~~~~~~~~p  149 (300)
                      +++  +|+||++|+.....  ..+..+.+..|+....++++++.+.+.  .++|++|... +...     .+.+. ....
T Consensus        94 ~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~--~~~v~~SS~~-vy~~~~~~~~~~E~-~~~~  169 (346)
T 4egb_A           94 IKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPH--IKLVQVSTDE-VYGSLGKTGRFTEE-TPLA  169 (346)
T ss_dssp             HHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTT--SEEEEEEEGG-GGCCCCSSCCBCTT-SCCC
T ss_pred             HhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCC--CEEEEeCchH-HhCCCCcCCCcCCC-CCCC
Confidence            666  99999999875322  123456788999999999999998754  2566666432 1000     00000 0111


Q ss_pred             CCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          150 AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       150 ~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      +...++.++...+++...+++..|++..-++...|+|...
T Consensus       170 p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~  209 (346)
T 4egb_A          170 PNSPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQ  209 (346)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC
T ss_pred             CCChhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCC
Confidence            2235677888888888888888899999999888899654

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=99.06  E-value=1.6e-09  Score=98.70  Aligned_cols=174  Identities=11%  Similarity=0.097  Sum_probs=101.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch-hhhhhhhhhhhhhc-c-CCcccEEEeCChhhhcCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-EALNGVKMELVDAA-F-PLLKGVVATTDAVEACTG   81 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~-~~l~g~~~dl~~~~-~-~~~~~v~~~~~~~~a~~~   81 (300)
                      .+||+||||+||||++++..|++.|.       +|+.++++... +++. ...++.... . ....++.-..+..+++++
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~-------~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   80 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY-------AVNTTVRDPDNQKKVS-HLLELQELGDLKIFRADLTDELSFEAPIAG   80 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC-------EEEEEESCTTCTTTTH-HHHHHGGGSCEEEEECCTTTSSSSHHHHTT
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC-------EEEEEEcCcchhhhHH-HHHhcCCCCcEEEEecCCCChHHHHHHHcC
Confidence            36899999999999999999998875       67766554311 1111 001121000 0 000111111245677899


Q ss_pred             CcEEEEeCCCCCCCCCcH-HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCC--CC----------
Q 022227           82 VNIAVMVGGFPRKEGMER-KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP--SI----------  148 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~r-~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~--~~----------  148 (300)
                      +|+|||+|+.......+. .+++..|+....++++++.+... -.++|++|........  .....  .+          
T Consensus        81 ~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~-v~r~V~~SS~~~~~~~--~~~~~~~~~~E~~~~~~~~  157 (338)
T 2rh8_A           81 CDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKS-VKRVILTSSAAAVTIN--QLDGTGLVVDEKNWTDIEF  157 (338)
T ss_dssp             CSEEEEESSCCCC---------CHHHHHHHHHHHHHHHHCTT-CCEEEEECCHHHHHHH--HHTCSCCCCCTTTTTCC--
T ss_pred             CCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCC-cCEEEEEecHHHeecC--CcCCCCcccChhhccchhh
Confidence            999999998642211222 33678899999999999988641 1256666654322111  11100  00          


Q ss_pred             --CC--Cc-EEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          149 --PA--KN-ITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       149 --p~--~~-i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                        |.  .. .++.++...+++...+++..|++..-++...|+|...
T Consensus       158 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~  203 (338)
T 2rh8_A          158 LTSAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSL  203 (338)
T ss_dssp             -----CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCS
T ss_pred             ccccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCC
Confidence              10  11 3677777777777777777799988898888889743

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=99.05  E-value=5.9e-10  Score=102.79  Aligned_cols=174  Identities=13%  Similarity=0.079  Sum_probs=100.8

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHh--cccCCCCCCeEEEEEecCCchhh-----hh--hhhhhhhhhcc-CCcccEEE
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIAR--GVMLGTDQPVILHMLDIPPAAEA-----LN--GVKMELVDAAF-PLLKGVVA   71 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~--~~~~~~~~~~~l~L~D~~~~~~~-----l~--g~~~dl~~~~~-~~~~~v~~   71 (300)
                      ++++++|+||||+|+||++++..|+.  .|.       +|+++|+......     .+  .....+..... ....++.-
T Consensus         7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d   79 (362)
T 3sxp_A            7 ELENQTILITGGAGFVGSNLAFHFQENHPKA-------KVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINN   79 (362)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHCTTS-------EEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTC
T ss_pred             hcCCCEEEEECCCCHHHHHHHHHHHhhCCCC-------eEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCC
Confidence            34668999999999999999999998  664       7889987542100     00  00000100000 00001100


Q ss_pred             eCChhhh-cCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH---HHHHHCCC
Q 022227           72 TTDAVEA-CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL---ILKEFAPS  147 (300)
Q Consensus        72 ~~~~~~a-~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~---~~~~~~~~  147 (300)
                      ..+..++ ..++|+||++||.......+..+.+..|+....++++.+++.+   +++|++|+ ..+...   ...+. ..
T Consensus        80 ~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~---~~~V~~SS-~~vyg~~~~~~~E~-~~  154 (362)
T 3sxp_A           80 PLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKK---AKVIYASS-AGVYGNTKAPNVVG-KN  154 (362)
T ss_dssp             HHHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTT---CEEEEEEE-GGGGCSCCSSBCTT-SC
T ss_pred             HHHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcC---CcEEEeCc-HHHhCCCCCCCCCC-CC
Confidence            1123344 6799999999997654445667788999999999999998774   45666664 221100   00000 00


Q ss_pred             CCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       148 ~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ..+...++.++...+++...+++.  ++...++...|+|...
T Consensus       155 ~~p~~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~  194 (362)
T 3sxp_A          155 ESPENVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPRE  194 (362)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTC
T ss_pred             CCCCChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCC
Confidence            111234666666666666555544  5666677656788653

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=99.04  E-value=1.1e-09  Score=98.84  Aligned_cols=163  Identities=12%  Similarity=0.098  Sum_probs=108.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||+||||+|++|++++..|+..|.       +|+.+++.+.  ...     +.... ....++. ..+..++++++|+|
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~-----~~~~~-~~~~Dl~-~~~~~~~~~~~d~V   66 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGN-------TPIILTRSIG--NKA-----INDYE-YRVSDYT-LEDLINQLNDVDAV   66 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCCC------------CCE-EEECCCC-HHHHHHHTTTCSEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC-------EEEEEeCCCC--ccc-----CCceE-EEEcccc-HHHHHHhhcCCCEE
Confidence            6899999999999999999998874       7888887631  111     11100 0112222 33567788999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCCcEEeeehhhH
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLTRLDH  161 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~~i~~~t~ld~  161 (300)
                      |++|+.....  +..+....|+...+++++++.+.+.+  ++|.+|.. .+...    ...+. ....+...++.++...
T Consensus        67 ih~a~~~~~~--~~~~~~~~n~~~~~~ll~a~~~~~~~--r~v~~SS~-~vyg~~~~~~~~E~-~~~~p~~~Y~~sK~~~  140 (311)
T 3m2p_A           67 VHLAATRGSQ--GKISEFHDNEILTQNLYDACYENNIS--NIVYASTI-SAYSDETSLPWNEK-ELPLPDLMYGVSKLAC  140 (311)
T ss_dssp             EECCCCCCSS--SCGGGTHHHHHHHHHHHHHHHHTTCC--EEEEEEEG-GGCCCGGGCSBCTT-SCCCCSSHHHHHHHHH
T ss_pred             EEccccCCCC--ChHHHHHHHHHHHHHHHHHHHHcCCC--EEEEEccH-HHhCCCCCCCCCCC-CCCCCCchhHHHHHHH
Confidence            9999876433  44556788999999999999987542  46666642 21100    00000 0111234567788888


Q ss_pred             HHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          162 NRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       162 ~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                      +++...++++.|++..-++...|+|....
T Consensus       141 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~  169 (311)
T 3m2p_A          141 EHIGNIYSRKKGLCIKNLRFAHLYGFNEK  169 (311)
T ss_dssp             HHHHHHHHHHSCCEEEEEEECEEECSCC-
T ss_pred             HHHHHHHHHHcCCCEEEEeeCceeCcCCC
Confidence            88888888888999989998888896654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.03  E-value=2e-10  Score=104.90  Aligned_cols=174  Identities=18%  Similarity=0.198  Sum_probs=115.4

Q ss_pred             CCCC-CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhh----hhhh---hhhc-c--C-----
Q 022227            1 MAKE-PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGV----KMEL---VDAA-F--P-----   64 (300)
Q Consensus         1 m~~~-~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~----~~dl---~~~~-~--~-----   64 (300)
                      |+.+ ..||+|+| +|.+|+.+|..++..|+       +|+|+|+++  +.++.-    ...+   .... .  .     
T Consensus         1 Ma~p~~~~VaViG-aG~MG~giA~~~a~~G~-------~V~l~D~~~--~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~   70 (319)
T 3ado_A            1 MASPAAGDVLIVG-SGLVGRSWAMLFASGGF-------RVKLYDIEP--RQITGALENIRKEMKSLQQSGSLKGSLSAEE   70 (319)
T ss_dssp             ------CEEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSCH--HHHHHHHHHHHHHHHHHHHTTCCCSSSCHHH
T ss_pred             CCCCCCCeEEEEC-CcHHHHHHHHHHHhCCC-------eEEEEECCH--HHHHHHHHHHHHHHHHHHHcCCCCCccCHHH
Confidence            6554 47999999 79999999999999886       799999974  333211    1111   1110 0  1     


Q ss_pred             CcccEEEeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           65 LLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        65 ~~~~v~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                      ....++.++++.+++++||+||-+.              -+|.++.+++.+.+.+++++++  |+.||++.....-+.+.
T Consensus        71 ~l~~i~~~~~l~~a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~a--IlaSNTSsl~is~ia~~  134 (319)
T 3ado_A           71 QLSLISSCTNLAEAVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDRV--VLSSSSSCLLPSKLFTG  134 (319)
T ss_dssp             HHHTEEEECCHHHHTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSSS--EEEECCSSCCHHHHHTT
T ss_pred             HHhhcccccchHhHhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhcc--eeehhhhhccchhhhhh
Confidence            1356788889989999999999873              3567888999999999999885  78899876433333332


Q ss_pred             CCC---------C-CCCc------EEe-eehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC-ceeeeccceee
Q 022227          145 APS---------I-PAKN------ITC-LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHATV  201 (300)
Q Consensus       145 ~~~---------~-p~~~------i~~-~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~-~~~p~~s~a~v  201 (300)
                      .+.         | |+..      +.+ .|.-++......+++++|..|.-+..-. -|+.++ -++|.|+.|.-
T Consensus       135 ~~~p~r~ig~HffNP~~~m~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~kd~-pGFi~NRl~~~~~~EA~~  208 (319)
T 3ado_A          135 LAHVKQCIVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEI-DGFVLNRLQYAIISEAWR  208 (319)
T ss_dssp             CTTGGGEEEEEECSSTTTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEECSSCC-TTTTHHHHHHHHHHHHHH
T ss_pred             ccCCCcEEEecCCCCccccchHHhcCCCCCcHHHHHHHHHHHHHhCCccCCcCCCC-CCEeHHHHHHHHHHHHHH
Confidence            111         1 3321      222 3777777777888899997775342232 577777 67778877764

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=99.00  E-value=6.7e-10  Score=101.96  Aligned_cols=177  Identities=15%  Similarity=0.116  Sum_probs=107.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch--hhhhhhhhhhhh---hcc-CCcccEEEeCChh
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--EALNGVKMELVD---AAF-PLLKGVVATTDAV   76 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~--~~l~g~~~dl~~---~~~-~~~~~v~~~~~~~   76 (300)
                      ++++||+||||+|++|++++..|+..|.       +|+++|+....  +.+......+..   ... ....++.-..+..
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~   97 (352)
T 1sb8_A           25 AQPKVWLITGVAGFIGSNLLETLLKLDQ-------KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCN   97 (352)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHH
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHH
Confidence            3457999999999999999999998764       78888875321  122211111100   000 0000100011245


Q ss_pred             hhcCCCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH---HHHHHCCCCCCC
Q 022227           77 EACTGVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL---ILKEFAPSIPAK  151 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~---~~~~~~~~~p~~  151 (300)
                      ++++++|+||++|+.....  ..+..+.+..|+....++++++.+.+.  .++|++|.....-..   ...+..+ ..+.
T Consensus        98 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~~v~~SS~~~~~~~~~~~~~E~~~-~~~~  174 (352)
T 1sb8_A           98 NACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKV--QSFTYAASSSTYGDHPGLPKVEDTI-GKPL  174 (352)
T ss_dssp             HHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC--SEEEEEEEGGGGTTCCCSSBCTTCC-CCCC
T ss_pred             HHhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCC--CEEEEeccHHhcCCCCCCCCCCCCC-CCCC
Confidence            6788999999999864311  123455678899999999999988743  256666654321000   0000000 0122


Q ss_pred             cEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          152 NITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       152 ~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ..++.++...+++...+++..|++..-++...|+|...
T Consensus       175 ~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~  212 (352)
T 1sb8_A          175 SPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQ  212 (352)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTC
T ss_pred             ChhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCC
Confidence            34667788778887778888899998888877888654

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=98.99  E-value=7.7e-10  Score=101.09  Aligned_cols=175  Identities=11%  Similarity=0.044  Sum_probs=105.3

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhc--ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-CCcccEEEeCChhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARG--VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVE   77 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~--~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-~~~~~v~~~~~~~~   77 (300)
                      |+. ++||+||||+|++|++++..|+..  |.       +|+++|+.......+ ...++.+... ....++.-..+..+
T Consensus         1 Ms~-m~~vlVTGatG~iG~~l~~~L~~~~~g~-------~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~   71 (348)
T 1oc2_A            1 MSQ-FKNIIVTGGAGFIGSNFVHYVYNNHPDV-------HVTVLDKLTYAGNKA-NLEAILGDRVELVVGDIADAELVDK   71 (348)
T ss_dssp             --C-CSEEEEETTTSHHHHHHHHHHHHHCTTC-------EEEEEECCCTTCCGG-GTGGGCSSSEEEEECCTTCHHHHHH
T ss_pred             CCc-CcEEEEeCCccHHHHHHHHHHHHhCCCC-------EEEEEeCCCCCCChh-HHhhhccCCeEEEECCCCCHHHHHH
Confidence            542 469999999999999999999987  43       788888753111111 0011110000 00001100113456


Q ss_pred             hcCCCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----------------
Q 022227           78 ACTGVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----------------  139 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----------------  139 (300)
                      +++++|+|||+||.....  ..+..+.+..|+....++++.+.+.+   +++|++|... +...                
T Consensus        72 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~---~~~v~~SS~~-vyg~~~~~~~~~~~~~~~~~  147 (348)
T 1oc2_A           72 LAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYD---IRFHHVSTDE-VYGDLPLREDLPGHGEGPGE  147 (348)
T ss_dssp             HHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHT---CEEEEEEEGG-GGCCBCCGGGSTTTTCSTTS
T ss_pred             HhhcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhC---CeEEEecccc-eeCCCcccccccccccccCC
Confidence            788999999999875311  11234567889999999999998873   3677766432 1000                


Q ss_pred             HHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       140 ~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      .+.+. ...++...++.++...+++...+++.+|++..-++...|+|...
T Consensus       148 ~~~E~-~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~  196 (348)
T 1oc2_A          148 KFTAE-TNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ  196 (348)
T ss_dssp             SBCTT-SCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC
T ss_pred             CcCCC-CCCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCC
Confidence            00000 01222345677788888888888888898888888777788654

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=98.98  E-value=1.2e-09  Score=99.31  Aligned_cols=176  Identities=13%  Similarity=0.075  Sum_probs=106.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc-c-CCcccEEEeCChhhhcCCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-F-PLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~-~-~~~~~v~~~~~~~~a~~~a   82 (300)
                      .|||+||||+|+||++++..|+..|. +    .+|+.+|........+.. .++.... . ....++.-.....+++.++
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~-~----~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   76 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHP-D----WEVINIDKLGYGSNPANL-KDLEDDPRYTFVKGDVADYELVKELVRKV   76 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCT-T----CEEEEEECCCTTCCGGGG-TTTTTCTTEEEEECCTTCHHHHHHHHHTC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCC-C----CEEEEEecCcccCchhHH-hhhccCCceEEEEcCCCCHHHHHHHhhCC
Confidence            46899999999999999999998751 0    178888875311111110 1111000 0 0000000011234566789


Q ss_pred             cEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCCcEEee
Q 022227           83 NIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCL  156 (300)
Q Consensus        83 DvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~~i~~~  156 (300)
                      |+|||+||.....  ..+..+.+..|+....++++.+.+... ..++|++|... +...    .+.+. ...++...++.
T Consensus        77 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~~iv~~SS~~-vyg~~~~~~~~E~-~~~~~~~~Y~~  153 (336)
T 2hun_A           77 DGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENP-EVRFVHVSTDE-VYGDILKGSFTEN-DRLMPSSPYSA  153 (336)
T ss_dssp             SEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCT-TSEEEEEEEGG-GGCCCSSSCBCTT-BCCCCCSHHHH
T ss_pred             CEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEeccHH-HHCCCCCCCcCCC-CCCCCCCccHH
Confidence            9999999875311  112345788899999999999998843 23677776432 1000    00000 01222345677


Q ss_pred             ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       157 t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ++...+++...+++.+|++..-++...|+|...
T Consensus       154 sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~  186 (336)
T 2hun_A          154 TKAASDMLVLGWTRTYNLNASITRCTNNYGPYQ  186 (336)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEEECEEESTTC
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCC
Confidence            888888888888888898888888888888654

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=98.98  E-value=1.5e-09  Score=98.89  Aligned_cols=173  Identities=13%  Similarity=0.087  Sum_probs=106.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC----CcccEEEeCChhhhc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----LLKGVVATTDAVEAC   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~----~~~~v~~~~~~~~a~   79 (300)
                      +.++|+||||+|+||++++..|+..|.       +|+++|++..  .......++......    ...++.-..+..+++
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~   74 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY-------DVVIADNLVN--SKREAIARIEKITGKTPAFHETDVSDERALARIF   74 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECCCSS--SCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHH
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC-------cEEEEecCCc--chHHHHHHHHhhcCCCceEEEeecCCHHHHHHHH
Confidence            457999999999999999999998875       7888887542  221111112111000    001111111344556


Q ss_pred             C--CCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCC
Q 022227           80 T--GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAK  151 (300)
Q Consensus        80 ~--~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~  151 (300)
                      +  ++|+|||+||.....  .....+.+..|+....++++.+++.+. . ++|++|+.. +...    ...+. ...++.
T Consensus        75 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~-~iv~~SS~~-~~g~~~~~~~~e~-~~~~~~  150 (341)
T 3enk_A           75 DAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAV-K-RIVFSSSAT-VYGVPERSPIDET-FPLSAT  150 (341)
T ss_dssp             HHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC-C-EEEEEEEGG-GBCSCSSSSBCTT-SCCBCS
T ss_pred             hccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCC-C-EEEEEecce-EecCCCCCCCCCC-CCCCCC
Confidence            5  899999999875311  123346678899999999999988753 2 566666422 1100    00000 011222


Q ss_pred             cEEeeehhhHHHHHHHHHHHcC-CCCCCeEEEEEecCCC
Q 022227          152 NITCLTRLDHNRALGQISEKLN-VQVSDVKNVIIWGNHS  189 (300)
Q Consensus       152 ~i~~~t~ld~~R~~~~la~~l~-v~~~~V~~~~V~G~hg  189 (300)
                      ..++.++...+++...+++.++ ++..-++...|+|.+.
T Consensus       151 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~  189 (341)
T 3enk_A          151 NPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHE  189 (341)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCT
T ss_pred             ChhHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCcc
Confidence            3567788888888888888876 7778888778889754

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=98.97  E-value=9.7e-10  Score=102.07  Aligned_cols=165  Identities=14%  Similarity=0.062  Sum_probs=105.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcc-cCCCCCCeEEEEEecCCchh--hhh------hhhhhhhhhccCCcccEEEeCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGV-MLGTDQPVILHMLDIPPAAE--ALN------GVKMELVDAAFPLLKGVVATTD   74 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~-~~~~~~~~~l~L~D~~~~~~--~l~------g~~~dl~~~~~~~~~~v~~~~~   74 (300)
                      ++|||+||||+|++|++++..|+..| .       +|+++|......  .+.      -...|+.+.           .+
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-------~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~-----------~~   92 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVN-------QVHVVDNLLSAEKINVPDHPAVRFSETSITDD-----------AL   92 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCS-------EEEEECCCTTCCGGGSCCCTTEEEECSCTTCH-----------HH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCc-------eEEEEECCCCCchhhccCCCceEEEECCCCCH-----------HH
Confidence            35799999999999999999999876 4       788888753211  110      001111111           13


Q ss_pred             hhhhcCCCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhh-cCCCeEEEEecCchhhHHH----HHH--HHC
Q 022227           75 AVEACTGVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQH-AAPNCKVLVVANPANTNAL----ILK--EFA  145 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~-~~~~~~viv~sNP~~~~~~----~~~--~~~  145 (300)
                      ..++++++|+||++|+.....  ..+..+.+..|+....++++++.+. ..  .++|++|... +...    .+.  +..
T Consensus        93 l~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~--~~~V~~SS~~-vyg~~~~~~~~~~E~~  169 (377)
T 2q1s_A           93 LASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRL--KKVVYSAAGC-SIAEKTFDDAKATEET  169 (377)
T ss_dssp             HHHCCSCCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSC--CEEEEEEEC---------------CCC
T ss_pred             HHHHhhCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC--CeEEEeCCHH-HcCCCCCCCcCccccc
Confidence            456678999999999865311  1234567788999999999999876 32  2566666532 1110    011  110


Q ss_pred             C--CC-CCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          146 P--SI-PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       146 ~--~~-p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      .  .. .+...++.++...+++...+++..|++..-++...|+|...
T Consensus       170 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~  216 (377)
T 2q1s_A          170 DIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGE  216 (377)
T ss_dssp             CCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred             ccccccCCCCchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCC
Confidence            0  11 22335677788888888788888899988888888888654

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=98.96  E-value=4.9e-09  Score=94.25  Aligned_cols=161  Identities=15%  Similarity=0.099  Sum_probs=105.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhh-h-----hhhhhhhhhhccCCcccEEEeCChhhhc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA-L-----NGVKMELVDAAFPLLKGVVATTDAVEAC   79 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~-l-----~g~~~dl~~~~~~~~~~v~~~~~~~~a~   79 (300)
                      |||.||||+|++|++++..|+..|.       +|+.+|....... .     +....|+.+           . +..+++
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d-----------~-~~~~~~   61 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY-------EVVVVDNLSSGRREFVNPSAELHVRDLKD-----------Y-SWGAGI   61 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECCCSSCCGGGSCTTSEEECCCTTS-----------T-TTTTTC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-------EEEEEeCCCCCchhhcCCCceEEECcccc-----------H-HHHhhc
Confidence            5899999999999999999998875       7888887542110 0     000111111           1 134556


Q ss_pred             CCCcEEEEeCCCCCC--CCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCCcE
Q 022227           80 TGVNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNI  153 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~~i  153 (300)
                      ++ |+|||+|+.+..  ...+....+..|+....++++.+.+.+. . ++|++|... +...    ...+. ...++...
T Consensus        62 ~~-d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~-~iv~~SS~~-vyg~~~~~~~~e~-~~~~p~~~  136 (312)
T 3ko8_A           62 KG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGV-R-TVVFASSST-VYGDADVIPTPEE-EPYKPISV  136 (312)
T ss_dssp             CC-SEEEECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTC-C-EEEEEEEGG-GGCSCSSSSBCTT-SCCCCCSH
T ss_pred             CC-CEEEECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCC-C-EEEEeCcHH-HhCCCCCCCCCCC-CCCCCCCh
Confidence            66 999999986532  2234566788899999999999988753 2 566666422 1100    00000 11222345


Q ss_pred             EeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          154 TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       154 ~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                      ++.++...+++...+++.+|++..-++...|+|....
T Consensus       137 Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~g~~~~  173 (312)
T 3ko8_A          137 YGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPRLR  173 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEEeeccccCcCCC
Confidence            7778888888888888888999888988788997543

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=98.95  E-value=4.5e-10  Score=103.82  Aligned_cols=171  Identities=9%  Similarity=0.047  Sum_probs=103.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEE-EeCChhhhcC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVV-ATTDAVEACT   80 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~-~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~-~~~~~~~a~~   80 (300)
                      ++++||+||||+|++|++++..|+.. |.       +|+.+|+..  +++..... ..... ....++. -.....++++
T Consensus        22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~-------~V~~~~r~~--~~~~~~~~-~~~v~-~~~~Dl~~d~~~~~~~~~   90 (372)
T 3slg_A           22 MKAKKVLILGVNGFIGHHLSKRILETTDW-------EVFGMDMQT--DRLGDLVK-HERMH-FFEGDITINKEWVEYHVK   90 (372)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHHSSC-------EEEEEESCC--TTTGGGGG-STTEE-EEECCTTTCHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCC-------EEEEEeCCh--hhhhhhcc-CCCeE-EEeCccCCCHHHHHHHhc
Confidence            35679999999999999999999987 64       788898864  22211100 00000 0000110 0113455778


Q ss_pred             CCcEEEEeCCCCCCCC--CcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH----HHHHCCCC------
Q 022227           81 GVNIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEFAPSI------  148 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~----~~~~~~~~------  148 (300)
                      ++|+||++|+......  .+..+.+..|+....++++++.+.+ +  ++|++|... +....    ..+..+..      
T Consensus        91 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~--~~v~~SS~~-vyg~~~~~~~~e~~~~~~~~p~~  166 (372)
T 3slg_A           91 KCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-K--HLVFPSTSE-VYGMCADEQFDPDASALTYGPIN  166 (372)
T ss_dssp             HCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-C--EEEEECCGG-GGBSCCCSSBCTTTCCEEECCTT
T ss_pred             cCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-C--cEEEeCcHH-HhCCCCCCCCCccccccccCCCC
Confidence            9999999998754211  2345667889999999999999885 2  577777532 11000    00000000      


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ++...++.+++..+++...+++. |++..-++...|+|...
T Consensus       167 ~p~~~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~  206 (372)
T 3slg_A          167 KPRWIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGL  206 (372)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSC
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCc
Confidence            11124666777777777777766 88888888777788653

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=98.94  E-value=4.1e-09  Score=94.99  Aligned_cols=162  Identities=15%  Similarity=0.170  Sum_probs=104.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch-hhh----hhhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-EAL----NGVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~-~~l----~g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      +||.||||+|+||++++..|+..|.       .+.+.+..... +.+    .....|+.+            .+..++++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~-------~v~~~~~~~~~~~~~~~~~~~~~~Dl~~------------~~~~~~~~   62 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESNE-------IVVIDNLSSGNEEFVNEAARLVKADLAA------------DDIKDYLK   62 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTSC-------EEEECCCSSCCGGGSCTTEEEECCCTTT------------SCCHHHHT
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCC-------EEEEEcCCCCChhhcCCCcEEEECcCCh------------HHHHHHhc
Confidence            5899999999999999999988762       34443332211 000    001122222            24567889


Q ss_pred             CCcEEEEeCCCCCC--CCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCCcEE
Q 022227           81 GVNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNIT  154 (300)
Q Consensus        81 ~aDvVi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~~i~  154 (300)
                      ++|+||++|+.+..  ...+..+.+..|+....++++.+.+.+. . ++|++|+.. +...    ...+. ...++...+
T Consensus        63 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~-~-~iv~~SS~~-vyg~~~~~~~~E~-~~~~~~~~Y  138 (313)
T 3ehe_A           63 GAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGV-S-RIVFTSTST-VYGEAKVIPTPED-YPTHPISLY  138 (313)
T ss_dssp             TCSEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTC-C-EEEEECCGG-GGCSCSSSSBCTT-SCCCCCSHH
T ss_pred             CCCEEEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCC-C-eEEEeCchH-HhCcCCCCCCCCC-CCCCCCCHH
Confidence            99999999986532  2334567788999999999999988753 2 567766532 1100    00000 011223356


Q ss_pred             eeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          155 CLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       155 ~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                      +.++...+++...+++.+|++..-++...|+|....
T Consensus       139 ~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~  174 (313)
T 3ehe_A          139 GASKLACEALIESYCHTFDMQAWIYRFANVIGRRST  174 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEEECSCEESTTCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEEeeccccCcCCC
Confidence            778888888888888889998888888788886543

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.94  E-value=1.6e-09  Score=98.50  Aligned_cols=174  Identities=11%  Similarity=-0.056  Sum_probs=103.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhh-hcc-CCcccEEEeCChhhhcCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD-AAF-PLLKGVVATTDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~-~~~-~~~~~v~~~~~~~~a~~~   81 (300)
                      +.+||+||||+|++|++++..|+..|.       +|+.+|.+....... ...++.. ... ....++.-..+..+++++
T Consensus        13 ~~~~vlVTGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   84 (335)
T 1rpn_A           13 MTRSALVTGITGQDGAYLAKLLLEKGY-------RVHGLVARRSSDTRW-RLRELGIEGDIQYEDGDMADACSVQRAVIK   84 (335)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSSCCCH-HHHHTTCGGGEEEEECCTTCHHHHHHHHHH
T ss_pred             cCCeEEEECCCChHHHHHHHHHHHCCC-------eEEEEeCCCcccccc-chhhccccCceEEEECCCCCHHHHHHHHHH
Confidence            458999999999999999999998764       788888764211000 0011100 000 000000001123445664


Q ss_pred             --CcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCCcE
Q 022227           82 --VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNI  153 (300)
Q Consensus        82 --aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~~i  153 (300)
                        .|+||++|+.....  ..+..+.+..|+....++++.+.+.+. ..++|++|...- ...    .+.+. ....+...
T Consensus        85 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~~~v~~SS~~v-~g~~~~~~~~E~-~~~~p~~~  161 (335)
T 1rpn_A           85 AQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSP-ETRFYQASTSEM-FGLIQAERQDEN-TPFYPRSP  161 (335)
T ss_dssp             HCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCT-TSEEEEEEEGGG-GCSCSSSSBCTT-SCCCCCSH
T ss_pred             cCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEEeCHHH-hCCCCCCCCCcc-cCCCCCCh
Confidence              59999999865321  234556788899999999999988752 136777765321 000    00000 00111234


Q ss_pred             EeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          154 TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       154 ~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      ++.++...+++...+++.++++..-++...++|..
T Consensus       162 Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~  196 (335)
T 1rpn_A          162 YGVAKLYGHWITVNYRESFGLHASSGILFNHESPL  196 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             hHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCC
Confidence            67778888888888888888888777766677754

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=98.94  E-value=1.3e-08  Score=92.32  Aligned_cols=175  Identities=12%  Similarity=0.062  Sum_probs=102.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC----C-cccEEEeCChhhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----L-LKGVVATTDAVEA   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~----~-~~~v~~~~~~~~a   78 (300)
                      +.++|+||||+|++|++++..|++.|.       +|++++++.  +++......+......    . ..++.-..+..++
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~   80 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGY-------KVRGTARSA--SKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEV   80 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-------EEEEEeCCc--ccHHHHHHHhhccCCCceEEEEecCCcChHHHHHH
Confidence            457999999999999999999998774       788888753  2222111111100000    0 0111111234566


Q ss_pred             cCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH-------HHH--------
Q 022227           79 CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI-------LKE--------  143 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~-------~~~--------  143 (300)
                      ++++|+|||+|+.... ..+..+.+..|+....++++.+.+... ..++|++|+........       +.+        
T Consensus        81 ~~~~d~vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~-~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~  158 (342)
T 1y1p_A           81 IKGAAGVAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATPS-VKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESI  158 (342)
T ss_dssp             TTTCSEEEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCTT-CCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHH
T ss_pred             HcCCCEEEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCCC-CcEEEEeccHHHhcCCCCCCCCcccCccccCchhh
Confidence            7789999999987643 245566788999999999999875322 23567666543210000       000        


Q ss_pred             ----HCCCC-C--CCcEEeeehhhHHHHHHHHHHHc--CCCCCCeEEEEEecCCC
Q 022227          144 ----FAPSI-P--AKNITCLTRLDHNRALGQISEKL--NVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       144 ----~~~~~-p--~~~i~~~t~ld~~R~~~~la~~l--~v~~~~V~~~~V~G~hg  189 (300)
                          ..+.. |  +...++.++...+++...+++.+  ++...-++...|+|...
T Consensus       159 ~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~  213 (342)
T 1y1p_A          159 DKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIF  213 (342)
T ss_dssp             HHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCS
T ss_pred             hhhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCC
Confidence                00000 1  11246677777777777777776  44445566666678643

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=98.94  E-value=2.7e-09  Score=96.31  Aligned_cols=167  Identities=13%  Similarity=0.157  Sum_probs=105.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhh--hhhhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA--LNGVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~--l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      +.++|+||||+|+||++++..|+..|.       +|+++|++...+.  +.-...|+.+..           +..+++++
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~~~~l~~~~~~~Dl~d~~-----------~~~~~~~~   72 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLTEQNV-------EVFGTSRNNEAKLPNVEMISLDIMDSQ-----------RVKKVISD   72 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCTTCCCTTEEEEECCTTCHH-----------HHHHHHHH
T ss_pred             CcceEEEECCCChHHHHHHHHHHHCCC-------EEEEEecCCccccceeeEEECCCCCHH-----------HHHHHHHh
Confidence            457999999999999999999998774       7888988642110  000112222211           23455665


Q ss_pred             --CcEEEEeCCCCCC--CCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH-----HHHHHHCCCCCCCc
Q 022227           82 --VNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA-----LILKEFAPSIPAKN  152 (300)
Q Consensus        82 --aDvVi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~-----~~~~~~~~~~p~~~  152 (300)
                        .|+||++||....  ...+..+.+..|+.....+++++.+... ..++|++|...-.-.     ..+.+. ...++..
T Consensus        73 ~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~~iv~~SS~~v~g~~~~~~~~~~E~-~~~~~~~  150 (321)
T 2pk3_A           73 IKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNL-DCRILTIGSSEEYGMILPEESPVSEE-NQLRPMS  150 (321)
T ss_dssp             HCCSEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-CCEEEEEEEGGGTBSCCGGGCSBCTT-SCCBCCS
T ss_pred             cCCCEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEEccHHhcCCCCCCCCCCCCC-CCCCCCC
Confidence              8999999987531  1224566788999999999999976632 236677665421000     000000 0112233


Q ss_pred             EEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          153 ITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       153 i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                      .++.++...+++...+++..|++..-++...|+|....
T Consensus       151 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~  188 (321)
T 2pk3_A          151 PYGVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQS  188 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCC
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCC
Confidence            56777888888877788888988888887778886543

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=98.92  E-value=3.1e-09  Score=95.96  Aligned_cols=156  Identities=13%  Similarity=0.170  Sum_probs=103.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC--CC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--GV   82 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~--~a   82 (300)
                      .|||+||||+|++|++++..|+..|.       ++++++...        ..|+.+..           +..++++  ++
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~-------~v~~~~r~~--------~~D~~d~~-----------~~~~~~~~~~~   56 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGD-------VELVLRTRD--------ELNLLDSR-----------AVHDFFASERI   56 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT-------EEEECCCTT--------TCCTTCHH-----------HHHHHHHHHCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-------eEEEEecCc--------cCCccCHH-----------HHHHHHHhcCC
Confidence            47999999999999999999988764       677776532        13554432           3455666  89


Q ss_pred             cEEEEeCCCCCCC---CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHC----CCCCCC
Q 022227           83 NIAVMVGGFPRKE---GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFA----PSIPAK  151 (300)
Q Consensus        83 DvVi~~ag~~~~~---g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~----~~~p~~  151 (300)
                      |+|||+|+.....   ..+..+.+..|+...+++++.+.+.+.  .++|.+|...- ...    .+.+..    +..|..
T Consensus        57 d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~v~~SS~~v-yg~~~~~~~~E~~~~~~~~~p~~  133 (321)
T 1e6u_A           57 DQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDV--NKLLFLGSSCI-YPKLAKQPMAESELLQGTLEPTN  133 (321)
T ss_dssp             SEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC--CEEEEECCGGG-SCTTCCSSBCGGGTTSSCCCGGG
T ss_pred             CEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCC--CeEEEEccHHH-cCCCCCCCcCccccccCCCCCCC
Confidence            9999999865311   123456778899999999999988643  25676665421 000    000000    000111


Q ss_pred             cEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          152 NITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       152 ~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ..++.++...+++...+++..+++..-++...|+|...
T Consensus       134 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~  171 (321)
T 1e6u_A          134 EPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHD  171 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTC
T ss_pred             CccHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCC
Confidence            24566777777777777777899988888888899654

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=98.90  E-value=9e-09  Score=94.54  Aligned_cols=169  Identities=16%  Similarity=0.147  Sum_probs=104.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC---
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT---   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~---   80 (300)
                      +.++|+||||+|++|++++..|+..|..      +|++++..+....+.    .+....  ...++.-.....++++   
T Consensus        45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~------~V~~~~r~~~~~~~~----~~~~~~--~~~d~~~~~~~~~~~~~~~  112 (357)
T 2x6t_A           45 EGRMIIVTGGAGFIGSNIVKALNDKGIT------DILVVDNLKDGTKFV----NLVDLN--IADYMDKEDFLIQIMAGEE  112 (357)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCC------CEEEEECCSSGGGGG----GTTTSC--CSEEEEHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCc------EEEEEecCCCcchhh----cccCce--EeeecCcHHHHHHHHhhcc
Confidence            3478999999999999999999987621      688888754221111    111100  1111111112334455   


Q ss_pred             --CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH----HHHHCCCCCCCcEE
Q 022227           81 --GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEFAPSIPAKNIT  154 (300)
Q Consensus        81 --~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~----~~~~~~~~p~~~i~  154 (300)
                        ++|+||++|+.......+..+.+..|+....++++++.+.+   +++|++|...- ....    +.+. ....+...+
T Consensus       113 ~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~---~r~V~~SS~~v-~g~~~~~~~~E~-~~~~p~~~Y  187 (357)
T 2x6t_A          113 FGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE---IPFLYASSAAT-YGGRTSDFIESR-EYEKPLNVF  187 (357)
T ss_dssp             CSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHT---CCEEEEEEGGG-GCSCSSCCCSSG-GGCCCSSHH
T ss_pred             cCCCCEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEcchHH-hCCCCCCCcCCc-CCCCCCChh
Confidence              59999999987654334566778899999999999998864   25666664321 1000    0000 000112346


Q ss_pred             eeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          155 CLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       155 ~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      +.++...+++...+++..|++..-++...|+|...
T Consensus       188 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~  222 (357)
T 2x6t_A          188 GYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPRE  222 (357)
T ss_dssp             HHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCC
Confidence            77788888888888888888888888878888653

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=98.90  E-value=3e-09  Score=96.45  Aligned_cols=161  Identities=16%  Similarity=0.109  Sum_probs=102.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch--hhhh----hhhhhhhhhccCCcccEEEeCChhhhc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--EALN----GVKMELVDAAFPLLKGVVATTDAVEAC   79 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~--~~l~----g~~~dl~~~~~~~~~~v~~~~~~~~a~   79 (300)
                      |||+||||+|++|++++..|+..|.       +|+.+|.....  +.+.    -...|+.+.           ....+++
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~-----------~~~~~~~   63 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGL-------SVVVVDNLQTGHEDAITEGAKFYNGDLRDK-----------AFLRDVF   63 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSCCGGGSCTTSEEEECCTTCH-----------HHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC-------EEEEEeCCCcCchhhcCCCcEEEECCCCCH-----------HHHHHHH
Confidence            6899999999999999999998764       78888875321  1110    001122111           1234556


Q ss_pred             C--CCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCC
Q 022227           80 T--GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAK  151 (300)
Q Consensus        80 ~--~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~  151 (300)
                      +  ++|+|||+|+.....  ..+..+.+..|+....++++++.+.+.  .++|++|... +...    .+.+. ....+.
T Consensus        64 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~~v~~Ss~~-~~~~~~~~~~~E~-~~~~~~  139 (330)
T 2c20_A           64 TQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKV--DKFIFSSTAA-TYGEVDVDLITEE-TMTNPT  139 (330)
T ss_dssp             HHSCEEEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTC--CEEEEECCGG-GGCSCSSSSBCTT-SCCCCS
T ss_pred             hhcCCCEEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCC--CEEEEeCCce-eeCCCCCCCCCcC-CCCCCC
Confidence            6  899999999865321  123456778899999999999988643  2566666532 1100    00000 001122


Q ss_pred             cEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          152 NITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       152 ~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      ..++.++...+++...+++..|++..-++...|+|..
T Consensus       140 ~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~  176 (330)
T 2c20_A          140 NTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGAT  176 (330)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTSSCEEEEEECSEEECCC
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCcEEEEecCcccCCC
Confidence            3566778888888777888788888888877778865

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=98.90  E-value=2.9e-09  Score=96.78  Aligned_cols=172  Identities=10%  Similarity=-0.055  Sum_probs=101.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh-hhhhhhhh-cc-CCcccEEEeCChhhhcC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG-VKMELVDA-AF-PLLKGVVATTDAVEACT   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g-~~~dl~~~-~~-~~~~~v~~~~~~~~a~~   80 (300)
                      +.+||+||||+|++|++++..|++.|.       +|+++|+++.  .+.. ...++... .. ....++.-..+..++++
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   72 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGY-------EVYGADRRSG--EFASWRLKELGIENDVKIIHMDLLEFSNIIRTIE   72 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECSCCS--TTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEECCCc--ccccccHhhccccCceeEEECCCCCHHHHHHHHH
Confidence            346999999999999999999998774       7899988642  1110 00111000 00 00001100112344555


Q ss_pred             C--CcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCCc
Q 022227           81 G--VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKN  152 (300)
Q Consensus        81 ~--aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~~  152 (300)
                      +  .|+|||+||.....  ..+..+.+..|+....++++.+.+.+. ..++|++|...- ...    .+.+. ...++..
T Consensus        73 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~~iv~~SS~~v-yg~~~~~~~~e~-~~~~~~~  149 (345)
T 2z1m_A           73 KVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKP-DTKFYQASTSEM-FGKVQEIPQTEK-TPFYPRS  149 (345)
T ss_dssp             HHCCSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCT-TCEEEEEEEGGG-GCSCSSSSBCTT-SCCCCCS
T ss_pred             hcCCCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-CceEEEEechhh-cCCCCCCCCCcc-CCCCCCC
Confidence            4  59999999875311  234456788899999999999988753 136777664321 000    00001 1122233


Q ss_pred             EEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecC
Q 022227          153 ITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN  187 (300)
Q Consensus       153 i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~  187 (300)
                      .++.++...+++...+++.++++....+.+.++|.
T Consensus       150 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp  184 (345)
T 2z1m_A          150 PYAVAKLFGHWITVNYREAYNMFACSGILFNHESP  184 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECT
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCC
Confidence            56778888888888888888876655555555664

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=98.90  E-value=4.1e-09  Score=98.11  Aligned_cols=173  Identities=17%  Similarity=0.126  Sum_probs=103.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHH-hcccCCCCCCeEEEEEecCCchhh-------hhhhhhhhhhhccCC-ccc---EE-E
Q 022227            5 PVRVLVTGAAGQIGYALVPMIA-RGVMLGTDQPVILHMLDIPPAAEA-------LNGVKMELVDAAFPL-LKG---VV-A   71 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~-~~~~~~~~~~~~l~L~D~~~~~~~-------l~g~~~dl~~~~~~~-~~~---v~-~   71 (300)
                      .|+|+||||+|+||++++..|+ ..|.       +|+++|.......       .+.....+....... ..+   +. +
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNH-------SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALE   74 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC-------EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCC-------EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEE
Confidence            3699999999999999999999 8764       7888887532110       111100011100000 000   11 1


Q ss_pred             eC------ChhhhcC--C-CcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH
Q 022227           72 TT------DAVEACT--G-VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        72 ~~------~~~~a~~--~-aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                      ..      ...++++  + +|+|||+|+.....  ..+..+.+..|+....++++++.+... . ++|++|. ..+....
T Consensus        75 ~~Dl~d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~-~-~iv~~SS-~~v~g~~  151 (397)
T 1gy8_A           75 VGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKC-D-KIIFSSS-AAIFGNP  151 (397)
T ss_dssp             ESCTTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC-C-EEEEEEE-GGGTBSC
T ss_pred             ECCCCCHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCC-C-EEEEECC-HHHhCCC
Confidence            11      2334555  6 99999999875321  123456788899999999999988643 2 5666654 2211000


Q ss_pred             -----------HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          141 -----------LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       141 -----------~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                                 +.+. ....+...++.++...+++...+++.+|++..-++...|+|.+
T Consensus       152 ~~~~~~~~~~~~~E~-~~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~  209 (397)
T 1gy8_A          152 TMGSVSTNAEPIDIN-AKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAH  209 (397)
T ss_dssp             CC-----CCCCBCTT-SCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCC
T ss_pred             CcccccccccCcCcc-CCCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCC
Confidence                       0000 0001123467778888888888888889988888888888875

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=98.89  E-value=2.4e-08  Score=90.01  Aligned_cols=175  Identities=13%  Similarity=0.054  Sum_probs=97.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEec-CCch-hhhhhhhhhhhh---hccCCcccEEEeCChhhhcC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI-PPAA-EALNGVKMELVD---AAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~-~~~~-~~l~g~~~dl~~---~~~~~~~~v~~~~~~~~a~~   80 (300)
                      +||+||||+|+||++++..|+..|.       +|+.+++ ++.. +++... .++..   .......++.-..+..++++
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   73 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGY-------SVNTTIRADPERKRDVSFL-TNLPGASEKLHFFNADLSNPDSFAAAIE   73 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-------EEEEECCCC----CCCHHH-HTSTTHHHHEEECCCCTTCGGGGHHHHT
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCC-------EEEEEEeCCccchhHHHHH-HhhhccCCceEEEecCCCCHHHHHHHHc
Confidence            5899999999999999999998874       6777665 3210 111100 01100   00000011111224567789


Q ss_pred             CCcEEEEeCCCCCCCCCc-HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH-----HHHHHC--------C
Q 022227           81 GVNIAVMVGGFPRKEGME-RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL-----ILKEFA--------P  146 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g~~-r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~-----~~~~~~--------~  146 (300)
                      ++|+|||+|+.......+ ..+++..|+....++++++.+... -.++|++|........     ...+..        +
T Consensus        74 ~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~-~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~  152 (322)
T 2p4h_X           74 GCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKT-VKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRS  152 (322)
T ss_dssp             TCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSS-CCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHH
T ss_pred             CCCEEEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCC-ccEEEEeccHHHcccCCCCCeecCCccccchhhhcc
Confidence            999999999643111111 234788899999999999987621 1256666543311000     000000        0


Q ss_pred             CCCCCc-EEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          147 SIPAKN-ITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       147 ~~p~~~-i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                      ..| .. .++.++....++...+++..|++..-++...|+|....
T Consensus       153 ~~p-~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~  196 (322)
T 2p4h_X          153 VKP-FGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVC  196 (322)
T ss_dssp             HCC-TTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCS
T ss_pred             cCc-ccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCC
Confidence            001 11 25556666666666667777888888888888887543

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=98.88  E-value=3e-09  Score=96.93  Aligned_cols=172  Identities=12%  Similarity=0.095  Sum_probs=105.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc-cC-CcccEEEeCChhhhcCC--
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FP-LLKGVVATTDAVEACTG--   81 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~-~~-~~~~v~~~~~~~~a~~~--   81 (300)
                      +||+||||+|+||++++..|+..|.       +|+++|+... ........++.... .. ...++.-..+..+++++  
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~-~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~   73 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGI-------DLIVFDNLSR-KGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYM   73 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCS-TTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHC
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCC-------EEEEEeCCCc-cCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccC
Confidence            6899999999999999999998764       7888886321 11110111121110 00 00011001124456777  


Q ss_pred             CcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH-------------------
Q 022227           82 VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI-------------------  140 (300)
Q Consensus        82 aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~-------------------  140 (300)
                      +|+||++|+.....  ..+..+.+..|+....++++++.+...+ .++|++|...- ....                   
T Consensus        74 ~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~-~~iv~~SS~~v-~g~~~~~~~~e~~~~~~~~~~~~  151 (347)
T 1orr_A           74 PDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSN-CNIIYSSTNKV-YGDLEQYKYNETETRYTCVDKPN  151 (347)
T ss_dssp             CSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTT-CEEEEEEEGGG-GTTCTTSCEEECSSCEEETTCTT
T ss_pred             CCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-ceEEEeccHHH-hCCCCcCCccccccccccccccc
Confidence            99999999865311  1134567788999999999999988642 35777765321 1000                   


Q ss_pred             -HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          141 -LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       141 -~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                       +.+. ...++...++.++...+++...+++.+|++..-++...|+|..
T Consensus       152 ~~~e~-~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~  199 (347)
T 1orr_A          152 GYDES-TQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGR  199 (347)
T ss_dssp             CBCTT-SCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             Ccccc-CCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcC
Confidence             0000 0111223566778887888888888889888888877778864

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=98.87  E-value=5.1e-09  Score=95.28  Aligned_cols=175  Identities=14%  Similarity=0.075  Sum_probs=103.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhc---ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc-c-CCcccEEEeCChhhhcC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARG---VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-F-PLLKGVVATTDAVEACT   80 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~---~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~-~-~~~~~v~~~~~~~~a~~   80 (300)
                      |||+||||+|++|++++..|+..   +..    ..+|+++|........+. ..++.... . ....++.-..+..+++.
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~----~~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   75 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVP----ADEVIVLDSLTYAGNRAN-LAPVDADPRLRFVHGDIRDAGLLARELR   75 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSC----CSEEEEEECCCTTCCGGG-GGGGTTCTTEEEEECCTTCHHHHHHHTT
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCC----ceEEEEEECCCccCchhh-hhhcccCCCeEEEEcCCCCHHHHHHHhc
Confidence            48999999999999999999985   410    017888887431111110 01111000 0 00001000112446678


Q ss_pred             CCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCCcEE
Q 022227           81 GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNIT  154 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~~i~  154 (300)
                      ++|+|||+|+.....  ..+..+.+..|+....++++.+.+...  .++|++|...- ...    .+.+. ...++...+
T Consensus        76 ~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~--~~~v~~SS~~v-yg~~~~~~~~E~-~~~~~~~~Y  151 (337)
T 1r6d_A           76 GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGV--GRVVHVSTNQV-YGSIDSGSWTES-SPLEPNSPY  151 (337)
T ss_dssp             TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTC--CEEEEEEEGGG-GCCCSSSCBCTT-SCCCCCSHH
T ss_pred             CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCC--CEEEEecchHH-hCCCCCCCCCCC-CCCCCCCch
Confidence            999999999865311  012345678899999999999998753  25666664321 000    00000 012223356


Q ss_pred             eeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          155 CLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       155 ~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      +.++...+++...+++..|++..-++...|+|...
T Consensus       152 ~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~  186 (337)
T 1r6d_A          152 AASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQ  186 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCC
Confidence            77788888887778888899888888777888654

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=98.86  E-value=3.2e-09  Score=94.94  Aligned_cols=161  Identities=16%  Similarity=0.126  Sum_probs=102.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC-
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG-   81 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~-   81 (300)
                      +++|||+||||+|++|++++..|+..|...   ..+...+         +....|+.+..           ...+++++ 
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~---~~~~~~~---------~~~~~D~~d~~-----------~~~~~~~~~   60 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAGLP---GEDWVFV---------SSKDADLTDTA-----------QTRALFEKV   60 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTCCT---TCEEEEC---------CTTTCCTTSHH-----------HHHHHHHHS
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCCcc---ccccccc---------CceecccCCHH-----------HHHHHHhhc
Confidence            566899999999999999999999876411   0111111         11234554433           34455665 


Q ss_pred             -CcEEEEeCCCCCC---CCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCC---CCCC
Q 022227           82 -VNIAVMVGGFPRK---EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAP---SIPA  150 (300)
Q Consensus        82 -aDvVi~~ag~~~~---~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~---~~p~  150 (300)
                       +|+|||+|+....   ...+..+.+..|+...+++++.+.+.+.+  ++|.+|... +...    .+.+..+   ...+
T Consensus        61 ~~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~--~~v~~SS~~-vyg~~~~~~~~E~~~~~~~~~p  137 (319)
T 4b8w_A           61 QPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR--KVVSCLSTC-IFPDKTTYPIDETMIHNGPPHN  137 (319)
T ss_dssp             CCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS--EEEEECCGG-GSCSSCCSSBCGGGGGBSCCCS
T ss_pred             CCCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCC--eEEEEcchh-hcCCCCCCCccccccccCCCCC
Confidence             9999999987431   12345667889999999999999887532  566666432 1000    0000000   0111


Q ss_pred             Cc-EEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          151 KN-ITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       151 ~~-i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      .. .++.++...+++...+++..+++..-++...|+|...
T Consensus       138 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~  177 (319)
T 4b8w_A          138 SNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHD  177 (319)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred             CcchHHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCC
Confidence            12 2666788788887888888899988888888889654

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=98.85  E-value=4.2e-09  Score=96.67  Aligned_cols=174  Identities=11%  Similarity=0.110  Sum_probs=104.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh-cc-CCcccEEEeCChhhhcC--
Q 022227            6 VRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AF-PLLKGVVATTDAVEACT--   80 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~-~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~-~~-~~~~~v~~~~~~~~a~~--   80 (300)
                      |||+||||+|+||++++..|+.. +.       +|+++|.....+.++.. .++... .. ....++.-..+..++++  
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~-------~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   72 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQD-------TVVNIDKLTYAGNLESL-SDISESNRYNFEHADICDSAEITRIFEQY   72 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC-------EEEEEECCCTTCCGGGG-TTTTTCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCC-------eEEEEecCCCCCchhhh-hhhhcCCCeEEEECCCCCHHHHHHHHhhc
Confidence            48999999999999999999986 43       78888875311111111 111110 00 00001100112345566  


Q ss_pred             CCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhh--cCC-----CeEEEEecCchhhHHH------------
Q 022227           81 GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQH--AAP-----NCKVLVVANPANTNAL------------  139 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~--~~~-----~~~viv~sNP~~~~~~------------  139 (300)
                      ++|+|||+||.....  ..+..+++..|+....++++.+.+.  ..+     ..++|++|+.. +...            
T Consensus        73 ~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~-v~g~~~~~~~~~~~~~  151 (361)
T 1kew_A           73 QPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDE-VYGDLPHPDEVENSVT  151 (361)
T ss_dssp             CCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGG-GGCCCCCGGGSCTTSC
T ss_pred             CCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHH-HhCCCccccccccccc
Confidence            899999999875311  1123457788999999999999887  421     12577766432 1000            


Q ss_pred             --HHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          140 --ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       140 --~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                        .+.+. ...++...++.++...+++...+++.+|++..-++...|+|...
T Consensus       152 ~~~~~E~-~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~  202 (361)
T 1kew_A          152 LPLFTET-TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYH  202 (361)
T ss_dssp             CCCBCTT-SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC
T ss_pred             CCCCCCC-CCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCC
Confidence              00000 01222345677888888888888888899988888888888754

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=98.85  E-value=4.6e-09  Score=95.73  Aligned_cols=173  Identities=11%  Similarity=0.066  Sum_probs=101.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhh------hhhhhhhhhhhccCCcccEEEeCChh
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA------LNGVKMELVDAAFPLLKGVVATTDAV   76 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~------l~g~~~dl~~~~~~~~~~v~~~~~~~   76 (300)
                      ++.|+|+||||+|+||++++..|+..|........+|+++|.+.....      +.-...|+.+.           .+..
T Consensus        12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~-----------~~~~   80 (342)
T 2hrz_A           12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAP-----------GEAE   80 (342)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCTTCCSEEEEEECCTTST-----------THHH
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCccccccCCceeEEEcCCCCH-----------HHHH
Confidence            356799999999999999999999876100000016888887542110      00011122221           1234


Q ss_pred             hhc-CCCcEEEEeCCCCCCC-CCcHHHHHHhhHHHHHHHHHHHhhhc----CCCeEEEEecCchhhHHH----HHHHHCC
Q 022227           77 EAC-TGVNIAVMVGGFPRKE-GMERKDVMSKNVSIYKAQASALEQHA----APNCKVLVVANPANTNAL----ILKEFAP  146 (300)
Q Consensus        77 ~a~-~~aDvVi~~ag~~~~~-g~~r~dl~~~N~~i~~~i~~~i~~~~----~~~~~viv~sNP~~~~~~----~~~~~~~  146 (300)
                      +++ .++|+|||+||..... ..+..+.+..|+....++++.+.+..    + ..++|++|...- ...    .+.+. .
T Consensus        81 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~-~~~iv~~SS~~~-~~~~~~~~~~E~-~  157 (342)
T 2hrz_A           81 KLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGY-KPRVVFTSSIAV-FGAPLPYPIPDE-F  157 (342)
T ss_dssp             HHHHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCC-CCEEEEEEEGGG-CCSSCCSSBCTT-C
T ss_pred             HHHhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCC-CcEEEEeCchHh-hCCCCCCCcCCC-C
Confidence            556 4899999999865311 12334567889999999999998865    1 135666664321 000    00000 0


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ...+...++.++...+++...+++..+++...++...|+|..|
T Consensus       158 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg  200 (342)
T 2hrz_A          158 HTTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPG  200 (342)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCS
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCC
Confidence            0012334667777777777777777777777777666677444

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.85  E-value=2.1e-08  Score=86.77  Aligned_cols=160  Identities=12%  Similarity=0.089  Sum_probs=97.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +.+||+||||+|++|++++..|++.|.       +|+++++++  ++++....  .........++.  .+..++++++|
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-------~V~~~~R~~--~~~~~~~~--~~~~~~~~~Dl~--~~~~~~~~~~D   86 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH-------EPVAMVRNE--EQGPELRE--RGASDIVVANLE--EDFSHAFASID   86 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSG--GGHHHHHH--TTCSEEEECCTT--SCCGGGGTTCS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC-------eEEEEECCh--HHHHHHHh--CCCceEEEcccH--HHHHHHHcCCC
Confidence            468999999999999999999998875       799999864  33321110  001000011111  45678899999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehhhHHH
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR  163 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R  163 (300)
                      +||++||....  .+..+.+..|+.....+++.+++.+.  .++|++|.-.....    ...+  ++...++.++...++
T Consensus        87 ~vi~~ag~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~--~~iv~~SS~~~~~~----~~~~--~~~~~Y~~sK~~~e~  156 (236)
T 3e8x_A           87 AVVFAAGSGPH--TGADKTILIDLWGAIKTIQEAEKRGI--KRFIMVSSVGTVDP----DQGP--MNMRHYLVAKRLADD  156 (236)
T ss_dssp             EEEECCCCCTT--SCHHHHHHTTTHHHHHHHHHHHHHTC--CEEEEECCTTCSCG----GGSC--GGGHHHHHHHHHHHH
T ss_pred             EEEECCCCCCC--CCccccchhhHHHHHHHHHHHHHcCC--CEEEEEecCCCCCC----CCCh--hhhhhHHHHHHHHHH
Confidence            99999997642  34566788899999999999988753  25777665221100    0000  111123333333222


Q ss_pred             HHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          164 ALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       164 ~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                          +.+..|++..-++.-.|+|+...
T Consensus       157 ----~~~~~gi~~~~lrpg~v~~~~~~  179 (236)
T 3e8x_A          157 ----ELKRSSLDYTIVRPGPLSNEEST  179 (236)
T ss_dssp             ----HHHHSSSEEEEEEECSEECSCCC
T ss_pred             ----HHHHCCCCEEEEeCCcccCCCCC
Confidence                23466777777776666776543

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=98.85  E-value=5.6e-09  Score=88.91  Aligned_cols=97  Identities=16%  Similarity=0.222  Sum_probs=69.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhh-------hhhhhhhccCCcccEEEeCChhhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGV-------KMELVDAAFPLLKGVVATTDAVEA   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~-------~~dl~~~~~~~~~~v~~~~~~~~a   78 (300)
                      |||+||||+|++|++++..|+..|.       +|+++++++  +++...       ..|+.+.            +. ++
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~-------~V~~~~R~~--~~~~~~~~~~~~~~~D~~d~------------~~-~~   58 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH-------EVTAIVRNA--GKITQTHKDINILQKDIFDL------------TL-SD   58 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCS--HHHHHHCSSSEEEECCGGGC------------CH-HH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC-------EEEEEEcCc--hhhhhccCCCeEEeccccCh------------hh-hh
Confidence            5899999999999999999998874       799998864  332211       1122111            12 67


Q ss_pred             cCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCc
Q 022227           79 CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                      ++++|+||++||.+...       ...|+...+++++.+++.+.  .++|++|+.
T Consensus        59 ~~~~d~vi~~ag~~~~~-------~~~~~~~~~~l~~a~~~~~~--~~~v~~SS~  104 (221)
T 3ew7_A           59 LSDQNVVVDAYGISPDE-------AEKHVTSLDHLISVLNGTVS--PRLLVVGGA  104 (221)
T ss_dssp             HTTCSEEEECCCSSTTT-------TTSHHHHHHHHHHHHCSCCS--SEEEEECCC
T ss_pred             hcCCCEEEECCcCCccc-------cchHHHHHHHHHHHHHhcCC--ceEEEEecc
Confidence            89999999999885421       34588889999999988743  367777754

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=98.83  E-value=1.1e-08  Score=95.28  Aligned_cols=177  Identities=11%  Similarity=0.125  Sum_probs=102.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhh--------------hhhhhhhhhhhccCCc---
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA--------------LNGVKMELVDAAFPLL---   66 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~--------------l~g~~~dl~~~~~~~~---   66 (300)
                      ..++|+||||+||||++++..|+..|.       +|+++|.......              +.....++........   
T Consensus        10 ~~~~vlVTG~tGfIG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~   82 (404)
T 1i24_A           10 HGSRVMVIGGDGYCGWATALHLSKKNY-------EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELY   82 (404)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEE
T ss_pred             CCCeEEEeCCCcHHHHHHHHHHHhCCC-------eEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEE
Confidence            357999999999999999999998874       7888886421100              0000000100000000   


Q ss_pred             -ccEEEeCChhhhcCC--CcEEEEeCCCCCCC--CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH
Q 022227           67 -KGVVATTDAVEACTG--VNIAVMVGGFPRKE--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA  138 (300)
Q Consensus        67 -~~v~~~~~~~~a~~~--aDvVi~~ag~~~~~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~  138 (300)
                       .++.-..+..+++++  +|+|||+||.....  ..+.   ...+..|+....++++.+.+.+. ..++|++|... +..
T Consensus        83 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~-~~~~V~~SS~~-vyg  160 (404)
T 1i24_A           83 VGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGE-ECHLVKLGTMG-EYG  160 (404)
T ss_dssp             ESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEEECCGG-GGC
T ss_pred             ECCCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCC-CcEEEEeCcHH-HhC
Confidence             011001123445666  99999999865311  1122   23667899999999999988753 13677776532 110


Q ss_pred             HHHHHHC----------------CCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          139 LILKEFA----------------PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       139 ~~~~~~~----------------~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ..-....                ...++...++.++...+++...+++.+|++..-++...|+|...
T Consensus       161 ~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~  227 (404)
T 1i24_A          161 TPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKT  227 (404)
T ss_dssp             CCSSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCC
T ss_pred             CCCCCCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCC
Confidence            0000000                01111234566777777777777777899988898888899653

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=98.83  E-value=3.3e-08  Score=90.25  Aligned_cols=169  Identities=10%  Similarity=0.003  Sum_probs=103.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +++||+||||+|++|++++..|+..|.       +|+++|...... .. ...++...  . ...+...+-...++.++|
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~-~~-~~~~~~~~--~-~~~~~~~D~~~~~~~~~d   93 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGH-------EVTVVDNFFTGR-KR-NVEHWIGH--E-NFELINHDVVEPLYIEVD   93 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSCC-GG-GTGGGTTC--T-TEEEEECCTTSCCCCCCS
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCC-------EEEEEeCCCccc-hh-hhhhhccC--C-ceEEEeCccCChhhcCCC
Confidence            467999999999999999999998764       788888753111 11 00111100  0 001111112234578899


Q ss_pred             EEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHC----CCCCCCcE
Q 022227           84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFA----PSIPAKNI  153 (300)
Q Consensus        84 vVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~----~~~p~~~i  153 (300)
                      +||++|+.....  ..+..+.+..|+....++++++.+.+   +++|++|.. .+...    ...+..    ...++...
T Consensus        94 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~---~~~v~~SS~-~v~g~~~~~~~~E~~~~~~~~~~~~~~  169 (343)
T 2b69_A           94 QIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG---ARLLLASTS-EVYGDPEVHPQSEDYWGHVNPIGPRAC  169 (343)
T ss_dssp             EEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHT---CEEEEEEEG-GGGBSCSSSSBCTTCCCBCCSSSTTHH
T ss_pred             EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC---CcEEEECcH-HHhCCCCCCCCcccccccCCCCCCCCc
Confidence            999999865321  22445667889999999999998874   367776642 21100    000000    00111234


Q ss_pred             EeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          154 TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       154 ~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      ++.++...+++...+++..+++..-++...|+|..
T Consensus       170 Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~  204 (343)
T 2b69_A          170 YDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR  204 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             hHHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcC
Confidence            66677777777777788889888888877778864

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=98.82  E-value=2.6e-09  Score=96.17  Aligned_cols=162  Identities=15%  Similarity=0.086  Sum_probs=102.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh-------hhhhhhhhccCCcccEEEeCChhhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG-------VKMELVDAAFPLLKGVVATTDAVEA   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g-------~~~dl~~~~~~~~~~v~~~~~~~~a   78 (300)
                      |||.||||+|++|++++..|+..|.       +|+++|.... .....       ...|+.+.           .+..++
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~-~~~~~~~~~~~~~~~Dl~~~-----------~~~~~~   61 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGL-------EVAVLDNLAT-GKRENVPKGVPFFRVDLRDK-----------EGVERA   61 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC-------EEEEECCCSS-CCGGGSCTTCCEECCCTTCH-----------HHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC-------EEEEEECCCc-CchhhcccCeEEEECCCCCH-----------HHHHHH
Confidence            4899999999999999999998764       7888887421 11110       01122111           123455


Q ss_pred             cC--CCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH-----HHHHHCCCCC
Q 022227           79 CT--GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL-----ILKEFAPSIP  149 (300)
Q Consensus        79 ~~--~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~-----~~~~~~~~~p  149 (300)
                      ++  ++|+|||+|+.....  ..+....+..|+....++++++.+.+. . ++|++|....+...     ...+. ...+
T Consensus        62 ~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~-~-~iv~~SS~~~~~g~~~~~~~~~E~-~~~~  138 (311)
T 2p5y_A           62 FREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGV-E-KLVFASTGGAIYGEVPEGERAEET-WPPR  138 (311)
T ss_dssp             HHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-S-EEEEEEEHHHHHCCCCTTCCBCTT-SCCC
T ss_pred             HHhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-C-EEEEeCCChhhcCCCCCCCCcCCC-CCCC
Confidence            66  899999999864311  123345678899999999999987653 2 56666643111100     00000 0011


Q ss_pred             CCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          150 AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       150 ~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      +...++.++...+++...+++..|++..-++...|+|...
T Consensus       139 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~  178 (311)
T 2p5y_A          139 PKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQ  178 (311)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTC
T ss_pred             CCChHHHHHHHHHHHHHHHHHHcCCCEEEEeeccccCcCC
Confidence            2235677788888887778888899988888878889643

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=98.81  E-value=1.4e-08  Score=92.38  Aligned_cols=163  Identities=14%  Similarity=0.078  Sum_probs=94.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC--C
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--G   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~--~   81 (300)
                      +.|+|+||||+|++|++++..|+..|.       +|+++|++... ..+ ...++.... ....++.-..+..++++  +
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~-------~V~~~~r~~~~-~~~-~~~~l~~v~-~~~~Dl~d~~~~~~~~~~~~   88 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGH-------EILVIDNFATG-KRE-VLPPVAGLS-VIEGSVTDAGLLERAFDSFK   88 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTC-------EEEEEECCSSS-CGG-GSCSCTTEE-EEECCTTCHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCCcc-chh-hhhccCCce-EEEeeCCCHHHHHHHHhhcC
Confidence            457999999999999999999998774       78888875321 110 000010000 00000000112445677  9


Q ss_pred             CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCC--C------CCcE
Q 022227           82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI--P------AKNI  153 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~--p------~~~i  153 (300)
                      +|+||++||.......+..+ +..|+.....+++++.+.+.  .++|++|.... ..     ...+.  |      +...
T Consensus        89 ~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~--~~iV~~SS~~~-~~-----~~~~~~~~~~E~~~~~~~  159 (330)
T 2pzm_A           89 PTHVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKAGV--KRLLNFQTALC-YG-----RPATVPIPIDSPTAPFTS  159 (330)
T ss_dssp             CSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHTC--SEEEEEEEGGG-GC-----SCSSSSBCTTCCCCCCSH
T ss_pred             CCEEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHcCC--CEEEEecCHHH-hC-----CCccCCCCcCCCCCCCCh
Confidence            99999999876432222334 78899999999999988753  25677665321 10     00011  1      2223


Q ss_pred             EeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          154 TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       154 ~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ++.++...+    .+.+.++++...++...++|...
T Consensus       160 Y~~sK~~~e----~~~~~~~~~~~~iR~~~v~gp~~  191 (330)
T 2pzm_A          160 YGISKTAGE----AFLMMSDVPVVSLRLANVTGPRL  191 (330)
T ss_dssp             HHHHHHHHH----HHHHTCSSCEEEEEECEEECTTC
T ss_pred             HHHHHHHHH----HHHHHcCCCEEEEeeeeeECcCC
Confidence            444444433    33444477888888666788654

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=98.80  E-value=5.8e-09  Score=95.75  Aligned_cols=173  Identities=13%  Similarity=0.044  Sum_probs=102.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh-cc-CCcccEEEeCChhhhcCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AF-PLLKGVVATTDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~-~~-~~~~~v~~~~~~~~a~~~   81 (300)
                      +.++|+||||+|++|++++..|+..|.       +|++++++..  ........+... .. ....++.-..+..+++++
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   78 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMGA-------TVKGYSLTAP--TVPSLFETARVADGMQSEIGDIRDQNKLLESIRE   78 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCS--SSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCC-------eEEEEeCCCc--ccchhhHhhccCCceEEEEccccCHHHHHHHHHh
Confidence            357999999999999999999998764       7888887542  221111111000 00 000000001123445555


Q ss_pred             --CcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH-----HHHHHCCCCCCCc
Q 022227           82 --VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL-----ILKEFAPSIPAKN  152 (300)
Q Consensus        82 --aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~-----~~~~~~~~~p~~~  152 (300)
                        +|+|||+||.+...  ..+..+.+..|+.....+++.+.+.+. ..++|++|... +...     ...+. ...++..
T Consensus        79 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~~~v~~SS~~-vyg~~~~~~~~~E~-~~~~~~~  155 (357)
T 1rkx_A           79 FQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGG-VKAVVNITSDK-CYDNKEWIWGYREN-EAMGGYD  155 (357)
T ss_dssp             HCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCC-CCEEEEECCGG-GBCCCCSSSCBCTT-SCBCCSS
T ss_pred             cCCCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEecCHH-HhCCCCcCCCCCCC-CCCCCCC
Confidence              89999999864211  123346778899999999999988742 23566666532 1000     00000 0112233


Q ss_pred             EEeeehhhHHHHHHHHHHHc---------CCCCCCeEEEEEecCC
Q 022227          153 ITCLTRLDHNRALGQISEKL---------NVQVSDVKNVIIWGNH  188 (300)
Q Consensus       153 i~~~t~ld~~R~~~~la~~l---------~v~~~~V~~~~V~G~h  188 (300)
                      .++.++...+++...+++.+         |++..-++...|+|..
T Consensus       156 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~  200 (357)
T 1rkx_A          156 PYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGG  200 (357)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTT
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCC
Confidence            46677777777777777765         8888788877778864

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.79  E-value=1.2e-08  Score=86.61  Aligned_cols=155  Identities=17%  Similarity=0.157  Sum_probs=92.3

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch--hhhhhhhhhhhhhccCCcccEEEeCChhhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--EALNGVKMELVDAAFPLLKGVVATTDAVEA   78 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~--~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a   78 (300)
                      |+.+.+||+|+||+|++|++++..|+..+.+.     +++++++++..  ...+....|+.+..           +..++
T Consensus         1 M~~~~~~vlVtGatG~iG~~l~~~l~~~g~~~-----~V~~~~r~~~~~~~~~~~~~~D~~~~~-----------~~~~~   64 (215)
T 2a35_A            1 MHSTPKRVLLAGATGLTGEHLLDRILSEPTLA-----KVIAPARKALAEHPRLDNPVGPLAELL-----------PQLDG   64 (215)
T ss_dssp             ---CCCEEEEECTTSHHHHHHHHHHHHCTTCC-----EEECCBSSCCCCCTTEECCBSCHHHHG-----------GGCCS
T ss_pred             CCCCCceEEEECCCcHHHHHHHHHHHhCCCCC-----eEEEEeCCCcccCCCceEEeccccCHH-----------HHHHh
Confidence            55456799999999999999999999876421     68888876421  01111223443322           22333


Q ss_pred             cCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeeh
Q 022227           79 CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR  158 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~  158 (300)
                      +  +|+||++||.......+..++...|+.....+++.+.+.+. . ++|++|.....          + ++...++.++
T Consensus        65 ~--~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~-~~v~~Ss~~~~----------~-~~~~~y~~sK  129 (215)
T 2a35_A           65 S--IDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGA-R-HYLVVSALGAD----------A-KSSIFYNRVK  129 (215)
T ss_dssp             C--CSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTC-C-EEEEECCTTCC----------T-TCSSHHHHHH
T ss_pred             h--hcEEEECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCC-C-EEEEECCcccC----------C-CCccHHHHHH
Confidence            4  89999999875432334566788899999999999988753 2 56666653210          1 1112223333


Q ss_pred             hhHHHHHHHHHHHcCCC-CCCeEEEEEecCCCC
Q 022227          159 LDHNRALGQISEKLNVQ-VSDVKNVIIWGNHSS  190 (300)
Q Consensus       159 ld~~R~~~~la~~l~v~-~~~V~~~~V~G~hg~  190 (300)
                      ...    ..+.+.+|++ ..-++...++|+...
T Consensus       130 ~~~----e~~~~~~~~~~~~~vrp~~v~g~~~~  158 (215)
T 2a35_A          130 GEL----EQALQEQGWPQLTIARPSLLFGPREE  158 (215)
T ss_dssp             HHH----HHHHTTSCCSEEEEEECCSEESTTSC
T ss_pred             HHH----HHHHHHcCCCeEEEEeCceeeCCCCc
Confidence            322    2333445666 666665556676443

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=98.79  E-value=6.6e-09  Score=93.28  Aligned_cols=161  Identities=11%  Similarity=0.061  Sum_probs=101.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhc--ccCCCCCCeEEEEEecCCchhhhh----hhhhhhhhhccCCcccEEEeCChhhhc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARG--VMLGTDQPVILHMLDIPPAAEALN----GVKMELVDAAFPLLKGVVATTDAVEAC   79 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~--~~~~~~~~~~l~L~D~~~~~~~l~----g~~~dl~~~~~~~~~~v~~~~~~~~a~   79 (300)
                      +||.||||+|++|++++..|+..  +.       +|+++|++.....+.    -...|+.+.           .+..+++
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~D~~d~-----------~~~~~~~   64 (312)
T 2yy7_A            3 PKILIIGACGQIGTELTQKLRKLYGTE-------NVIASDIRKLNTDVVNSGPFEVVNALDF-----------NQIEHLV   64 (312)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHHHCGG-------GEEEEESCCCSCHHHHSSCEEECCTTCH-----------HHHHHHH
T ss_pred             ceEEEECCccHHHHHHHHHHHHhCCCC-------EEEEEcCCCccccccCCCceEEecCCCH-----------HHHHHHH
Confidence            68999999999999999999987  54       688888754221110    001122111           1344556


Q ss_pred             C--CCcEEEEeCCCCCCC-CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCCc
Q 022227           80 T--GVNIAVMVGGFPRKE-GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKN  152 (300)
Q Consensus        80 ~--~aDvVi~~ag~~~~~-g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~~  152 (300)
                      +  ++|+|||+|+..... ..+..+.+..|+....++++.+.+.+. . ++|++|...-.-..    ...+. ....+..
T Consensus        65 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~-~~v~~SS~~~~~~~~~~~~~~e~-~~~~~~~  141 (312)
T 2yy7_A           65 EVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKI-K-KIFWPSSIAVFGPTTPKENTPQY-TIMEPST  141 (312)
T ss_dssp             HHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSC-S-EEECCEEGGGCCTTSCSSSBCSS-CBCCCCS
T ss_pred             hhcCCCEEEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCC-C-EEEEeccHHHhCCCCCCCCcccc-CcCCCCc
Confidence            6  899999999864321 123456788899999999999988643 1 56665543210000    00000 0011123


Q ss_pred             EEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecC
Q 022227          153 ITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN  187 (300)
Q Consensus       153 i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~  187 (300)
                      .++.++...+++...+++..|++..-++...|+|.
T Consensus       142 ~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~g~  176 (312)
T 2yy7_A          142 VYGISKQAGERWCEYYHNIYGVDVRSIRYPGLISW  176 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCEEECEEECEEECS
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCcEEEEeCCeEecC
Confidence            46677887778877788888999888987778885

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=98.79  E-value=4.2e-08  Score=87.80  Aligned_cols=166  Identities=17%  Similarity=0.165  Sum_probs=103.7

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC-----
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG-----   81 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~-----   81 (300)
                      ||+||||+|++|++++..|+..|..      +|++++..+......    ++....  ...++.-.....+++++     
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~------~V~~~~r~~~~~~~~----~~~~~~--~~~d~~~~~~~~~~~~~~~~~~   68 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGIT------DILVVDNLKDGTKFV----NLVDLN--IADYMDKEDFLIQIMAGEEFGD   68 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCC------CEEEEECCSSGGGGH----HHHTSC--CSEEEEHHHHHHHHHTTCCCSS
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCc------EEEEEccCCCCchhh----hcCcce--eccccccHHHHHHHHhccccCC
Confidence            5899999999999999999987621      688888754221111    111110  11111111133455654     


Q ss_pred             CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH----HHHHCCCCCCCcEEeee
Q 022227           82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEFAPSIPAKNITCLT  157 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~----~~~~~~~~p~~~i~~~t  157 (300)
                      +|+||++|+.......+..+.+..|+....++++++.+.+   +++|.+|... +....    ..+..+ ..+...++.+
T Consensus        69 ~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~---~~~v~~SS~~-v~g~~~~~~~~E~~~-~~p~~~Y~~s  143 (310)
T 1eq2_A           69 VEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE---IPFLYASSAA-TYGGRTSDFIESREY-EKPLNVYGYS  143 (310)
T ss_dssp             CCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHT---CCEEEEEEGG-GGTTCCSCBCSSGGG-CCCSSHHHHH
T ss_pred             CcEEEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEeeHH-HhCCCCCCCCCCCCC-CCCCChhHHH
Confidence            9999999987654334566778899999999999998874   2567666532 11000    000000 0112345667


Q ss_pred             hhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       158 ~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      +...+++...+++..|++..-++...|+|...
T Consensus       144 K~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~  175 (310)
T 1eq2_A          144 KFLFDEYVRQILPEANSQIVGFRYFNVYGPRE  175 (310)
T ss_dssp             HHHHHHHHHHHGGGCSSCEEEEEECEEESSSC
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCcEECcCC
Confidence            77777777777877888888888777788653

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=98.79  E-value=7.4e-09  Score=88.61  Aligned_cols=99  Identities=12%  Similarity=0.211  Sum_probs=71.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh------hhhhhhh-hccCCcccEEEeCChhhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG------VKMELVD-AAFPLLKGVVATTDAVEA   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g------~~~dl~~-~~~~~~~~v~~~~~~~~a   78 (300)
                      |||+||||+|++|++++..|+..|.       +|+++++++  +++..      ...|+.+ .           .+..++
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~-------~V~~~~R~~--~~~~~~~~~~~~~~D~~d~~-----------~~~~~~   60 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY-------QIYAGARKV--EQVPQYNNVKAVHFDVDWTP-----------EEMAKQ   60 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC-------EEEEEESSG--GGSCCCTTEEEEECCTTSCH-----------HHHHTT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCc--cchhhcCCceEEEecccCCH-----------HHHHHH
Confidence            4899999999999999999998774       799998864  22221      1223322 1           145677


Q ss_pred             cCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           79 CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      ++++|+||++||.....      .+..|+.....+++.+++.+.  .++|++|.
T Consensus        61 ~~~~d~vi~~ag~~~~~------~~~~n~~~~~~l~~a~~~~~~--~~iv~~SS  106 (219)
T 3dqp_A           61 LHGMDAIINVSGSGGKS------LLKVDLYGAVKLMQAAEKAEV--KRFILLST  106 (219)
T ss_dssp             TTTCSEEEECCCCTTSS------CCCCCCHHHHHHHHHHHHTTC--CEEEEECC
T ss_pred             HcCCCEEEECCcCCCCC------cEeEeHHHHHHHHHHHHHhCC--CEEEEECc
Confidence            88999999999876522      455688888899999988753  25677665

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=98.78  E-value=2.9e-08  Score=89.23  Aligned_cols=166  Identities=14%  Similarity=0.041  Sum_probs=101.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch--hhhhhhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--EALNGVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~--~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      +++||+||||+|++|++++..|+..|.       +|+.+++....  ....    .+.+...  ...+.   -...++.+
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~----~~~~~~~--~~~~~---~~~~Dl~~   69 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE-------EVTVLDDLRVPPMIPPE----GTGKFLE--KPVLE---LEERDLSD   69 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-------CEEEECCCSSCCSSCCT----TSSEEEC--SCGGG---CCHHHHTT
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC-------EEEEEecCCcccccchh----hhhhhcc--CCCee---EEeCcccc
Confidence            367999999999999999999998874       68888875421  0111    1111000  00000   12334559


Q ss_pred             CcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCCcEEe
Q 022227           82 VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITC  155 (300)
Q Consensus        82 aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~~i~~  155 (300)
                      +|+||++|+.....  ..+..+... |+...+++++.+.+.+.  .++|++|...- ...    ...+. ....+...++
T Consensus        70 ~d~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v--~~~v~~SS~~v-~~~~~~~~~~E~-~~~~p~~~Y~  144 (321)
T 3vps_A           70 VRLVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGV--PKVVVGSTCEV-YGQADTLPTPED-SPLSPRSPYA  144 (321)
T ss_dssp             EEEEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTC--CEEEEEEEGGG-GCSCSSSSBCTT-SCCCCCSHHH
T ss_pred             CCEEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCC--CeEEEecCHHH-hCCCCCCCCCCC-CCCCCCChhH
Confidence            99999999865310  112233455 99999999999998863  25666664321 000    00000 0111233567


Q ss_pred             eehhhHHHHHHHHHHHcCC-CCCCeEEEEEecCCCC
Q 022227          156 LTRLDHNRALGQISEKLNV-QVSDVKNVIIWGNHSS  190 (300)
Q Consensus       156 ~t~ld~~R~~~~la~~l~v-~~~~V~~~~V~G~hg~  190 (300)
                      .++...+++...+++..++ +..-++...|+|....
T Consensus       145 ~sK~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~  180 (321)
T 3vps_A          145 ASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGER  180 (321)
T ss_dssp             HHHHHHHHHHHHHHHSSSSCEEEEEEECEEECTTCC
T ss_pred             HHHHHHHHHHHHHHHHcCCCceEEEEeccccCcCCC
Confidence            7888888888888888888 7778887778886543

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=98.78  E-value=9.7e-09  Score=90.56  Aligned_cols=155  Identities=16%  Similarity=0.164  Sum_probs=95.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhh---hhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA---LNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~---l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      +||+||||+|++|++++..|+..|.       +|+++++++....   .+....|+.+.           ....++++++
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~Dl~d~-----------~~~~~~~~~~   64 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAH-------EVRLSDIVDLGAAEAHEEIVACDLADA-----------QAVHDLVKDC   64 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEE-------EEEECCSSCCCCCCTTEEECCCCTTCH-----------HHHHHHHTTC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCC-------EEEEEeCCCccccCCCccEEEccCCCH-----------HHHHHHHcCC
Confidence            5899999999999999999988764       7888888642110   00111222221           1345678899


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH----HHHHHHCCCCCCCcEEeeeh
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA----LILKEFAPSIPAKNITCLTR  158 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~----~~~~~~~~~~p~~~i~~~t~  158 (300)
                      |+||++|+...  ..+..+.+..|+.....+++.+.+...  .++|++|.....-.    ..+.+. ....+...++.++
T Consensus        65 d~vi~~a~~~~--~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~iv~~SS~~~~~~~~~~~~~~E~-~~~~~~~~Y~~sK  139 (267)
T 3ay3_A           65 DGIIHLGGVSV--ERPWNDILQANIIGAYNLYEAARNLGK--PRIVFASSNHTIGYYPRTTRIDTE-VPRRPDSLYGLSK  139 (267)
T ss_dssp             SEEEECCSCCS--CCCHHHHHHHTHHHHHHHHHHHHHTTC--CEEEEEEEGGGSTTSBTTSCBCTT-SCCCCCSHHHHHH
T ss_pred             CEEEECCcCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEeCCHHHhCCCCCCCCCCCC-CCCCCCChHHHHH
Confidence            99999998762  234456788899999999999987643  25676665321100    000000 0011123456666


Q ss_pred             hhHHHHHHHHHHHcCCCCCCeEEEE
Q 022227          159 LDHNRALGQISEKLNVQVSDVKNVI  183 (300)
Q Consensus       159 ld~~R~~~~la~~l~v~~~~V~~~~  183 (300)
                      ...+++...+++..|++..-++...
T Consensus       140 ~~~e~~~~~~~~~~gi~~~~lrp~~  164 (267)
T 3ay3_A          140 CFGEDLASLYYHKFDIETLNIRIGS  164 (267)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEEECB
T ss_pred             HHHHHHHHHHHHHcCCCEEEEecee
Confidence            6666666666666677666665443

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=98.77  E-value=7.5e-09  Score=95.20  Aligned_cols=170  Identities=16%  Similarity=0.160  Sum_probs=104.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-CCcccEEEeCChhhhcCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~-~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-~~~~~v~~~~~~~~a~~~   81 (300)
                      +.++|+||||+|++|++++..|++. |..      +|+++++++  +++.....++..... ....++.-.....+++++
T Consensus        20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~------~V~~~~r~~--~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~   91 (344)
T 2gn4_A           20 DNQTILITGGTGSFGKCFVRKVLDTTNAK------KIIVYSRDE--LKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEG   91 (344)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCCCS------EEEEEESCH--HHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhhCCCC------EEEEEECCh--hhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhc
Confidence            3579999999999999999999987 631      688898863  333222222211000 000111111134567889


Q ss_pred             CcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehh
Q 022227           82 VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRL  159 (300)
Q Consensus        82 aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~l  159 (300)
                      +|+||++|+....+  ..+..+.+..|+....++++++.+.+. . ++|.+|.-..            ..+...++.++.
T Consensus        92 ~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v-~-~~V~~SS~~~------------~~p~~~Y~~sK~  157 (344)
T 2gn4_A           92 VDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAI-S-QVIALSTDKA------------ANPINLYGATKL  157 (344)
T ss_dssp             CSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTC-S-EEEEECCGGG------------SSCCSHHHHHHH
T ss_pred             CCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCC-C-EEEEecCCcc------------CCCccHHHHHHH
Confidence            99999999875422  123456788999999999999998753 2 5677664211            111334566666


Q ss_pred             hHHHHHHHHHHH---cCCCCCCeEEEEEecCCCCceeeec
Q 022227          160 DHNRALGQISEK---LNVQVSDVKNVIIWGNHSSSQYPDV  196 (300)
Q Consensus       160 d~~R~~~~la~~---l~v~~~~V~~~~V~G~hg~~~~p~~  196 (300)
                      ..+++...+++.   .|+....++...|+|..+ +.+|.+
T Consensus       158 ~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~-~~i~~~  196 (344)
T 2gn4_A          158 CSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG-SVVPFF  196 (344)
T ss_dssp             HHHHHHHHGGGCCCSSCCEEEEECCCEETTCTT-SHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcEEEEEEeccEECCCC-CHHHHH
Confidence            666666655554   345666666666777654 344544

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.77  E-value=5.7e-09  Score=96.50  Aligned_cols=138  Identities=17%  Similarity=0.196  Sum_probs=98.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||.||||+|++|++++..|+..|..      +++.+|+..+.             .           +..++++++|+|
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~------~v~~~d~~~d~-------------~-----------~l~~~~~~~d~V   50 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDH------HIFEVHRQTKE-------------E-----------ELESALLKADFI   50 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC------EEEECCTTCCH-------------H-----------HHHHHHHHCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCC------EEEEECCCCCH-------------H-----------HHHHHhccCCEE
Confidence            58999999999999999999987642      68888873111             1           234556689999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehhhHHHHH
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAL  165 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~  165 (300)
                      |++|+.....  +..+....|+...+++++.+++.+.+ .++|.+|.....            + ...++.++...+++.
T Consensus        51 ih~a~~~~~~--~~~~~~~~n~~~~~~l~~a~~~~~~~-~~~v~~Ss~~~~------------~-~~~Y~~sK~~~E~~~  114 (369)
T 3st7_A           51 VHLAGVNRPE--HDKEFSLGNVSYLDHVLDILTRNTKK-PAILLSSSIQAT------------Q-DNPYGESKLQGEQLL  114 (369)
T ss_dssp             EECCCSBCTT--CSTTCSSSCCBHHHHHHHHHTTCSSC-CEEEEEEEGGGG------------S-CSHHHHHHHHHHHHH
T ss_pred             EECCcCCCCC--CHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEEeCchhhc------------C-CCCchHHHHHHHHHH
Confidence            9999876522  23345667899999999999887642 356666643210            0 123455667777777


Q ss_pred             HHHHHHcCCCCCCeEEEEEecCCC
Q 022227          166 GQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       166 ~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ..++++.+++..-++...|+|...
T Consensus       115 ~~~~~~~g~~~~i~R~~~v~G~~~  138 (369)
T 3st7_A          115 REYAEEYGNTVYIYRWPNLFGKWC  138 (369)
T ss_dssp             HHHHHHHCCCEEEEEECEEECTTC
T ss_pred             HHHHHHhCCCEEEEECCceeCCCC
Confidence            778888899888888888888755

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=98.75  E-value=4.3e-08  Score=82.34  Aligned_cols=101  Identities=16%  Similarity=0.220  Sum_probs=69.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh--------hhhhhhhhccCCcccEEEeCChhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG--------VKMELVDAAFPLLKGVVATTDAVE   77 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g--------~~~dl~~~~~~~~~~v~~~~~~~~   77 (300)
                      +||+|+||+|++|++++..|++.|.       +++++++++  +++..        ...|+.+.           .+..+
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~~~D~~~~-----------~~~~~   63 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY-------EVTVLVRDS--SRLPSEGPRPAHVVVGDVLQA-----------ADVDK   63 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCG--GGSCSSSCCCSEEEESCTTSH-----------HHHHH
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC-------eEEEEEeCh--hhcccccCCceEEEEecCCCH-----------HHHHH
Confidence            7999999999999999999998764       788898864  22211        01121111           13557


Q ss_pred             hcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCc
Q 022227           78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                      +++++|+||+++|.......     ...|+.....+++.+.+... . ++|++|..
T Consensus        64 ~~~~~d~vi~~a~~~~~~~~-----~~~n~~~~~~~~~~~~~~~~-~-~~v~~Ss~  112 (206)
T 1hdo_A           64 TVAGQDAVIVLLGTRNDLSP-----TTVMSEGARNIVAAMKAHGV-D-KVVACTSA  112 (206)
T ss_dssp             HHTTCSEEEECCCCTTCCSC-----CCHHHHHHHHHHHHHHHHTC-C-EEEEECCG
T ss_pred             HHcCCCEEEECccCCCCCCc-----cchHHHHHHHHHHHHHHhCC-C-eEEEEeee
Confidence            78899999999987543111     23678888999999988753 2 56666654

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=98.75  E-value=9.8e-09  Score=94.94  Aligned_cols=175  Identities=10%  Similarity=-0.024  Sum_probs=99.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch---hhhhhhhhhh---hhhccC-CcccEEEeCChhhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA---EALNGVKMEL---VDAAFP-LLKGVVATTDAVEA   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~---~~l~g~~~dl---~~~~~~-~~~~v~~~~~~~~a   78 (300)
                      ++|+||||+|+||++++..|+..|.       +|+++|++...   ++++....++   ...... ...++.-..+..++
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~   97 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY-------EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKI   97 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHH
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC-------EEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHH
Confidence            5899999999999999999998764       78888876421   1111110000   000000 00000000123344


Q ss_pred             cCC--CcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCC-CeEEEEecCchhhHHH---HHHHHCCCCCC
Q 022227           79 CTG--VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAP-NCKVLVVANPANTNAL---ILKEFAPSIPA  150 (300)
Q Consensus        79 ~~~--aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~-~~~viv~sNP~~~~~~---~~~~~~~~~p~  150 (300)
                      +++  .|+||++||.....  ..+..+.+..|+.....+++.+.+...+ ..++|++|...-.-..   .+.+. ....+
T Consensus        98 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~-~~~~~  176 (375)
T 1t2a_A           98 INEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKET-TPFYP  176 (375)
T ss_dssp             HHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTT-SCCCC
T ss_pred             HHhcCCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCcc-CCCCC
Confidence            554  59999999875311  1233456788999999999999887531 1367776653210000   00000 01112


Q ss_pred             CcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          151 KNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       151 ~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      ...++.++...+++...+++.++++..-++.+.++|..
T Consensus       177 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~  214 (375)
T 1t2a_A          177 RSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR  214 (375)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             CChhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCC
Confidence            33567778877788888888888877666655556643

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=98.75  E-value=5.8e-09  Score=95.24  Aligned_cols=172  Identities=13%  Similarity=0.085  Sum_probs=100.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch----hhhhhhhhhhhhhccCCc----ccEEEeCChhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA----EALNGVKMELVDAAFPLL----KGVVATTDAVE   77 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~----~~l~g~~~dl~~~~~~~~----~~v~~~~~~~~   77 (300)
                      ++|+||||+|++|++++..|+..|.       +|+++|.....    +.......++........    .++.-..+..+
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~   75 (348)
T 1ek6_A            3 EKVLVTGGAGYIGSHTVLELLEAGY-------LPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQR   75 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC-------CEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHH
Confidence            6899999999999999999998764       68888864211    000101111211000000    01100112344


Q ss_pred             hcC--CCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCC
Q 022227           78 ACT--GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIP  149 (300)
Q Consensus        78 a~~--~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p  149 (300)
                      +++  ++|+|||+|+.....  ..+..+.+..|+.....+++.+.+.+.  .++|++|... +...    .+.+..+..|
T Consensus        76 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~iv~~SS~~-~~g~~~~~~~~E~~~~~p  152 (348)
T 1ek6_A           76 LFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGV--KNLVFSSSAT-VYGNPQYLPLDEAHPTGG  152 (348)
T ss_dssp             HHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC--CEEEEEEEGG-GGCSCSSSSBCTTSCCCC
T ss_pred             HHHhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCC--CEEEEECcHH-HhCCCCCCCcCCCCCCCC
Confidence            566  899999999865311  123456788899999999999988643  2566666432 1100    0000000012


Q ss_pred             CCcEEeeehhhHHHHHHHHHHHcC--CCCCCeEEEEEecCC
Q 022227          150 AKNITCLTRLDHNRALGQISEKLN--VQVSDVKNVIIWGNH  188 (300)
Q Consensus       150 ~~~i~~~t~ld~~R~~~~la~~l~--v~~~~V~~~~V~G~h  188 (300)
                      ....++.++...+++...+++. +  ++..-++...|+|.+
T Consensus       153 ~~~~Y~~sK~~~e~~~~~~~~~-~~~~~~~~lR~~~v~G~~  192 (348)
T 1ek6_A          153 CTNPYGKSKFFIEEMIRDLCQA-DKTWNAVLLRYFNPTGAH  192 (348)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECEEECCC
T ss_pred             CCCchHHHHHHHHHHHHHHHhc-CCCcceEEEeeccccCCC
Confidence            1334667777777777777776 5  777778877778875

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=98.75  E-value=1.6e-08  Score=91.95  Aligned_cols=169  Identities=13%  Similarity=0.075  Sum_probs=101.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEE-eCChhhhcCCCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA-TTDAVEACTGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~-~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~-~~~~~~a~~~aD   83 (300)
                      |||+||||+|++|++++..|+.. |.       +|++++++.  +++.... +..... ....++.- .....++++++|
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~-------~V~~~~r~~--~~~~~~~-~~~~~~-~~~~D~~~~~~~~~~~~~~~d   69 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY-------EVYGLDIGS--DAISRFL-NHPHFH-FVEGDISIHSEWIEYHVKKCD   69 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC-------EEEEEESCC--GGGGGGT-TCTTEE-EEECCTTTCSHHHHHHHHHCS
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC-------EEEEEeCCc--chHHHhh-cCCCeE-EEeccccCcHHHHHhhccCCC
Confidence            48999999999999999999986 54       788888764  2221100 000000 00000000 001345677899


Q ss_pred             EEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH----HHHHCCC---CC---CC
Q 022227           84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEFAPS---IP---AK  151 (300)
Q Consensus        84 vVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~----~~~~~~~---~p---~~  151 (300)
                      +|||+||.....  ..+..+.+..|+....++++.+.+.+   .++|++|...- ....    ..+..+.   .|   +.
T Consensus        70 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~v~~SS~~v-~g~~~~~~~~e~~~~~~~~~~~~~~  145 (345)
T 2bll_A           70 VVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR---KRIIFPSTSEV-YGMCSDKYFDEDHSNLIVGPVNKPR  145 (345)
T ss_dssp             EEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT---CEEEEECCGGG-GBTCCCSSBCTTTCCCBCCCTTCGG
T ss_pred             EEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC---CeEEEEecHHH-cCCCCCCCcCCcccccccCcccCcc
Confidence            999999865311  12345567889999999999998764   36777765321 1000    0000000   01   11


Q ss_pred             cEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          152 NITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       152 ~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ..++.++...+++...+++..|++..-++...|+|...
T Consensus       146 ~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~  183 (345)
T 2bll_A          146 WIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRL  183 (345)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSC
T ss_pred             cccHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCc
Confidence            24566777777887777888899888888777888654

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=98.73  E-value=2.2e-08  Score=86.69  Aligned_cols=109  Identities=12%  Similarity=0.164  Sum_probs=75.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh--------hhhhhhhhccCCcccEEEeCCh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG--------VKMELVDAAFPLLKGVVATTDA   75 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g--------~~~dl~~~~~~~~~~v~~~~~~   75 (300)
                      +.++|+||||+|++|++++..|+..|.+.     +|+++++++.  ++..        ...|+.+.           .+.
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~-----~V~~~~r~~~--~~~~~~~~~~~~~~~D~~d~-----------~~~   78 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFS-----KVTLIGRRKL--TFDEEAYKNVNQEVVDFEKL-----------DDY   78 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCS-----EEEEEESSCC--CCCSGGGGGCEEEECCGGGG-----------GGG
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCC-----EEEEEEcCCC--CccccccCCceEEecCcCCH-----------HHH
Confidence            45789999999999999999999887532     6888887642  2211        11222222           245


Q ss_pred             hhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCc
Q 022227           76 VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                      .++++++|+||++||.... ..+..+++..|+.....+++.+.+...  .++|++|..
T Consensus        79 ~~~~~~~d~vi~~ag~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~--~~iv~~SS~  133 (242)
T 2bka_A           79 ASAFQGHDVGFCCLGTTRG-KAGAEGFVRVDRDYVLKSAELAKAGGC--KHFNLLSSK  133 (242)
T ss_dssp             GGGGSSCSEEEECCCCCHH-HHHHHHHHHHHTHHHHHHHHHHHHTTC--CEEEEECCT
T ss_pred             HHHhcCCCEEEECCCcccc-cCCcccceeeeHHHHHHHHHHHHHCCC--CEEEEEccC
Confidence            5678899999999986431 112345677899999999999887653  257777653

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=98.73  E-value=2.5e-08  Score=90.74  Aligned_cols=169  Identities=14%  Similarity=0.100  Sum_probs=98.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc--hhhhhhhhhhhhhhccC----CcccEEEeCChhhhc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA--AEALNGVKMELVDAAFP----LLKGVVATTDAVEAC   79 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~--~~~l~g~~~dl~~~~~~----~~~~v~~~~~~~~a~   79 (300)
                      |||+||||+|+||++++..|+..|.       +|+++|....  .+.++    .+......    ...++.-..+..+++
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~-------~V~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~Dl~~~~~~~~~~   69 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGH-------DVIILDNLCNSKRSVLP----VIERLGGKHPTFVEGDIRNEALMTEIL   69 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSCCTTHHH----HHHHHHTSCCEEEECCTTCHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEecCCCcchhHHH----HHHhhcCCcceEEEccCCCHHHHHHHh
Confidence            4899999999999999999998774       7888875321  11111    11110000    000110001223444


Q ss_pred             C--CCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCC
Q 022227           80 T--GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAK  151 (300)
Q Consensus        80 ~--~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~  151 (300)
                      +  ++|+|||+||.....  ..+..+.+..|+.....+++.+++.+. . ++|++|... ....    .+.+..+..|..
T Consensus        70 ~~~~~D~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~-~iv~~SS~~-~~g~~~~~~~~e~~~~~~~~  146 (338)
T 1udb_A           70 HDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANV-K-NFIFSSSAT-VYGDNPKIPYVESFPTGTPQ  146 (338)
T ss_dssp             HHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTC-C-EEEEEEEGG-GGCSCCSSSBCTTSCCCCCS
T ss_pred             hccCCCEEEECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCC-C-eEEEEccHH-HhCCCCCCCcCcccCCCCCC
Confidence            4  589999999864311  112345678899999999999988753 2 566665422 1100    000000001213


Q ss_pred             cEEeeehhhHHHHHHHHHHHc-CCCCCCeEEEEEecCC
Q 022227          152 NITCLTRLDHNRALGQISEKL-NVQVSDVKNVIIWGNH  188 (300)
Q Consensus       152 ~i~~~t~ld~~R~~~~la~~l-~v~~~~V~~~~V~G~h  188 (300)
                      ..++.++...+++...+++.. +++..-++...|+|.|
T Consensus       147 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~  184 (338)
T 1udb_A          147 SPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAH  184 (338)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCC
T ss_pred             ChHHHHHHHHHHHHHHHHHhcCCCceEEEeeceecCCC
Confidence            356677777777777777776 7777778877788875

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=98.72  E-value=2.4e-08  Score=85.30  Aligned_cols=150  Identities=14%  Similarity=0.078  Sum_probs=89.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhh--------hhhhhhhccCCcccEEEeCChhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGV--------KMELVDAAFPLLKGVVATTDAVE   77 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~--------~~dl~~~~~~~~~~v~~~~~~~~   77 (300)
                      |||+||||+|++|++++..|+..|.       +|+++++++  +++...        ..|+.+.            +. +
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~-------~V~~~~R~~--~~~~~~~~~~~~~~~~D~~d~------------~~-~   58 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH-------EVLAVVRDP--QKAADRLGATVATLVKEPLVL------------TE-A   58 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHTCTTSEEEECCGGGC------------CH-H
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC-------EEEEEEecc--cccccccCCCceEEecccccc------------cH-h
Confidence            5899999999999999999998874       788998863  332211        1122111            12 6


Q ss_pred             hcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH-----HHHHHCCCCCC-C
Q 022227           78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL-----ILKEFAPSIPA-K  151 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~-----~~~~~~~~~p~-~  151 (300)
                      +++++|+||++||....+..     ...|+...+++++.+++.+   .++|++|........     .... .+..|. .
T Consensus        59 ~~~~~d~vi~~ag~~~~~~~-----~~~n~~~~~~l~~a~~~~~---~~~v~~SS~~~~~~~~~~~~~~~~-~~~~~~~~  129 (224)
T 3h2s_A           59 DLDSVDAVVDALSVPWGSGR-----GYLHLDFATHLVSLLRNSD---TLAVFILGSASLAMPGADHPMILD-FPESAASQ  129 (224)
T ss_dssp             HHTTCSEEEECCCCCTTSSC-----THHHHHHHHHHHHTCTTCC---CEEEEECCGGGSBCTTCSSCGGGG-CCGGGGGS
T ss_pred             hcccCCEEEECCccCCCcch-----hhHHHHHHHHHHHHHHHcC---CcEEEEecceeeccCCCCcccccc-CCCCCccc
Confidence            78999999999988532221     3468899999999998875   367777653221000     0000 011110 2


Q ss_pred             cEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecC
Q 022227          152 NITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN  187 (300)
Q Consensus       152 ~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~  187 (300)
                      ..++.++...+.+ ..+.+..+++..-++...|+|.
T Consensus       130 ~~y~~sK~~~e~~-~~~~~~~~i~~~ivrp~~v~g~  164 (224)
T 3h2s_A          130 PWYDGALYQYYEY-QFLQMNANVNWIGISPSEAFPS  164 (224)
T ss_dssp             TTHHHHHHHHHHH-HHHTTCTTSCEEEEEECSBCCC
T ss_pred             hhhHHHHHHHHHH-HHHHhcCCCcEEEEcCccccCC
Confidence            2344455444433 2344455777666766656665

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=98.70  E-value=1.4e-07  Score=84.36  Aligned_cols=100  Identities=21%  Similarity=0.247  Sum_probs=68.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||.||||+||||++++..|+.+|.       +|+.+.+++......   .|-               ...++++++|.|
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~-------~V~~l~R~~~~~~~~---~~~---------------~~~~~l~~~d~v   55 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH-------EVTLVSRKPGPGRIT---WDE---------------LAASGLPSCDAA   55 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCCTTEEE---HHH---------------HHHHCCCSCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCCCcCeee---cch---------------hhHhhccCCCEE
Confidence            6999999999999999999999875       788887654221111   110               124568899999


Q ss_pred             EEeCCCCCC-----CCC-cHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEe
Q 022227           86 VMVGGFPRK-----EGM-ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVV  130 (300)
Q Consensus        86 i~~ag~~~~-----~g~-~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~  130 (300)
                      |++|+.+-.     ... ...++...|+...+.+.+.+++...+..++|..
T Consensus        56 ihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~  106 (298)
T 4b4o_A           56 VNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLV  106 (298)
T ss_dssp             EECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred             EEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence            999875321     111 234567789999999999988876533333433

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=98.70  E-value=1.7e-08  Score=92.49  Aligned_cols=100  Identities=16%  Similarity=0.181  Sum_probs=68.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhh-----hhhhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA-----LNGVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~-----l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      |||.||||+|++|++++..|+..|-.  ....+|+.+|++.....     ++-...|+.+..           +..++++
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~--~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~-----------~~~~~~~   68 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTP--GGPWKVYGVARRTRPAWHEDNPINYVQCDISDPD-----------DSQAKLS   68 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCT--TCSEEEEEEESSCCCSCCCSSCCEEEECCTTSHH-----------HHHHHHT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCC--CCceEEEEEeCCCCccccccCceEEEEeecCCHH-----------HHHHHHh
Confidence            68999999999999999999876510  00027888887642111     001112222211           3456677


Q ss_pred             C---CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhc
Q 022227           81 G---VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA  121 (300)
Q Consensus        81 ~---aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~  121 (300)
                      +   +|+|||+|+...   .+..+....|+....++++++.+.+
T Consensus        69 ~~~~~d~vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~  109 (364)
T 2v6g_A           69 PLTDVTHVFYVTWANR---STEQENCEANSKMFRNVLDAVIPNC  109 (364)
T ss_dssp             TCTTCCEEEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCCCCEEEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHhc
Confidence            7   999999998753   3456778899999999999999874

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=98.69  E-value=1.9e-08  Score=92.55  Aligned_cols=173  Identities=10%  Similarity=0.018  Sum_probs=97.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch---hhhhhhhhhhh--hhcc-CCcccEEEeCChhhhc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA---EALNGVKMELV--DAAF-PLLKGVVATTDAVEAC   79 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~---~~l~g~~~dl~--~~~~-~~~~~v~~~~~~~~a~   79 (300)
                      ++|.||||+|++|++++..|+..|.       +|+++|.+...   +.++....+..  .... ....++.-..+..+++
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~   74 (372)
T 1db3_A            2 KVALITGVTGQDGSYLAEFLLEKGY-------EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRIL   74 (372)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECC---------------------CCEEECCCCSSCHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-------EEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHH
Confidence            6899999999999999999998764       78888875321   11111000000  0000 0001111111233445


Q ss_pred             CC--CcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCC-CeEEEEecCchhhHHH----HHHHHCCCCCC
Q 022227           80 TG--VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAP-NCKVLVVANPANTNAL----ILKEFAPSIPA  150 (300)
Q Consensus        80 ~~--aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~-~~~viv~sNP~~~~~~----~~~~~~~~~p~  150 (300)
                      ++  .|+|||+||.....  ..+....+..|+....++++.+.+...+ ..++|++|...- ...    ...+. ...++
T Consensus        75 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v-~g~~~~~~~~E~-~~~~~  152 (372)
T 1db3_A           75 REVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSEL-YGLVQEIPQKET-TPFYP  152 (372)
T ss_dssp             HHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGG-GTTCCSSSBCTT-SCCCC
T ss_pred             HhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhh-hCCCCCCCCCcc-CCCCC
Confidence            54  69999999875422  2334556788999999999999887531 136777665321 100    00000 01122


Q ss_pred             CcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecC
Q 022227          151 KNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN  187 (300)
Q Consensus       151 ~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~  187 (300)
                      ...++.++...+++...+++.++++..-++.+.++|.
T Consensus       153 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp  189 (372)
T 1db3_A          153 RSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESP  189 (372)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECT
T ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCC
Confidence            3356777888888888888888887665554444554

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=98.68  E-value=2.1e-08  Score=90.26  Aligned_cols=160  Identities=17%  Similarity=0.185  Sum_probs=99.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHhc--ccCCCCCCeEEEEEecCCchh-hhhhhhhhhhhhccCCcccEEEeCChhhhcC--C
Q 022227            7 RVLVTGAAGQIGYALVPMIARG--VMLGTDQPVILHMLDIPPAAE-ALNGVKMELVDAAFPLLKGVVATTDAVEACT--G   81 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~--~~~~~~~~~~l~L~D~~~~~~-~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~--~   81 (300)
                      ||+||||+|++|++++..|+..  +.       +|+++|...... ...-...|+.+..           +..++++  +
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~-------~V~~~~r~~~~~~~~~~~~~D~~d~~-----------~~~~~~~~~~   62 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKK-------NVIASDIVQRDTGGIKFITLDVSNRD-----------EIDRAVEKYS   62 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGG-------GEEEEESSCCCCTTCCEEECCTTCHH-----------HHHHHHHHTT
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCC-------EEEEecCCCccccCceEEEecCCCHH-----------HHHHHHhhcC
Confidence            5899999999999999999876  53       578888653211 0111122333221           3445566  8


Q ss_pred             CcEEEEeCCCCCCC-CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCCcEEee
Q 022227           82 VNIAVMVGGFPRKE-GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCL  156 (300)
Q Consensus        82 aDvVi~~ag~~~~~-g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~~i~~~  156 (300)
                      +|+|||+|+..... ..+..+.+..|+....++++.+.+.+. . ++|++|.....-..    ...+. ....+...++.
T Consensus        63 ~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~-~~v~~SS~~~~~~~~~~~~~~e~-~~~~p~~~Y~~  139 (317)
T 3ajr_A           63 IDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHRV-E-KVVIPSTIGVFGPETPKNKVPSI-TITRPRTMFGV  139 (317)
T ss_dssp             CCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC-C-EEEEEEEGGGCCTTSCSSSBCSS-SCCCCCSHHHH
T ss_pred             CcEEEECCcccCCccccChHHHhhhhhHHHHHHHHHHHHcCC-C-EEEEecCHHHhCCCCCCCCcccc-ccCCCCchHHH
Confidence            99999999864311 123456678899999999999988643 2 56666643211000    00000 00112335677


Q ss_pred             ehhhHHHHHHHHHHHcCCCCCCeEEEEEecC
Q 022227          157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGN  187 (300)
Q Consensus       157 t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~  187 (300)
                      ++...+++...+++..|++..-++...++|.
T Consensus       140 sK~~~e~~~~~~~~~~~~~~~~lR~~~~~g~  170 (317)
T 3ajr_A          140 TKIAAELLGQYYYEKFGLDVRSLRYPGIISY  170 (317)
T ss_dssp             HHHHHHHHHHHHHHHHCCEEEEEEECEEECS
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCcEecc
Confidence            7887777777777888988888876666784

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=98.66  E-value=1.6e-08  Score=93.77  Aligned_cols=173  Identities=9%  Similarity=-0.055  Sum_probs=97.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch---hhhhhhhhhhhh--h-cc-CCcccEEEeCChhhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA---EALNGVKMELVD--A-AF-PLLKGVVATTDAVEA   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~---~~l~g~~~dl~~--~-~~-~~~~~v~~~~~~~~a   78 (300)
                      ++|+||||+|+||++++..|+..|.       +|++++++...   +.++....++..  . .. ....++.-..+..++
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~  101 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY-------EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRW  101 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHH
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-------EEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHH
Confidence            5899999999999999999998774       78888875421   011111000000  0 00 000000000123345


Q ss_pred             cCC--CcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCC---CeEEEEecCchhhHHH---HHHHHCCCC
Q 022227           79 CTG--VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAP---NCKVLVVANPANTNAL---ILKEFAPSI  148 (300)
Q Consensus        79 ~~~--aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~---~~~viv~sNP~~~~~~---~~~~~~~~~  148 (300)
                      +++  .|+||++||.....  ..+....+..|+.....+++.+.+...+   ..++|++|...- ...   .+.+. ...
T Consensus       102 ~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~v-yg~~~~~~~E~-~~~  179 (381)
T 1n7h_A          102 IDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEM-FGSTPPPQSET-TPF  179 (381)
T ss_dssp             HHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGG-GTTSCSSBCTT-SCC
T ss_pred             HHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHH-hCCCCCCCCCC-CCC
Confidence            554  59999999865321  1233456778999999999988876421   236777765321 000   00000 012


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecC
Q 022227          149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN  187 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~  187 (300)
                      ++...++.++...+++...+++.++++...++.+.++|.
T Consensus       180 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp  218 (381)
T 1n7h_A          180 HPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESP  218 (381)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECT
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCC
Confidence            223356777888888877788888876655554555564

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=98.66  E-value=5.6e-08  Score=88.47  Aligned_cols=108  Identities=14%  Similarity=0.091  Sum_probs=71.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchh--hhhh------hhhhhhhhccCCcccEEEeCCh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE--ALNG------VKMELVDAAFPLLKGVVATTDA   75 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~--~l~g------~~~dl~~~~~~~~~~v~~~~~~   75 (300)
                      +++||+||||+|++|++++..|+..|.       +|+++|++....  .+..      ...|+.+.           .+.
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~-----------~~~   81 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGD-------KVVGIDNFATGRREHLKDHPNLTFVEGSIADH-----------ALV   81 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSCCGGGSCCCTTEEEEECCTTCH-----------HHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-------EEEEEECCCccchhhHhhcCCceEEEEeCCCH-----------HHH
Confidence            457999999999999999999998774       788888753211  1110      01111111           123


Q ss_pred             hhhcCC--CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           76 VEACTG--VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        76 ~~a~~~--aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      .+++++  +|+||++||..........+ +..|+.....+++.+.+.+.  .++|++|.
T Consensus        82 ~~~~~~~~~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~--~~iV~~SS  137 (333)
T 2q1w_A           82 NQLIGDLQPDAVVHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNNV--GRFVYFQT  137 (333)
T ss_dssp             HHHHHHHCCSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTTC--SEEEEEEE
T ss_pred             HHHHhccCCcEEEECceecCCCccCChH-HHHHHHHHHHHHHHHHHhCC--CEEEEECc
Confidence            456677  99999999875432222333 78899999999999988642  25676665

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=98.66  E-value=9e-08  Score=92.80  Aligned_cols=158  Identities=16%  Similarity=0.153  Sum_probs=94.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      +|||+||||+|++|++++..|+..|.       +|+.++.+..  +.+....|+.             ....++++++|+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~-------~V~~l~R~~~--~~~~v~~d~~-------------~~~~~~l~~~D~  204 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH-------EVIQLVRKEP--KPGKRFWDPL-------------NPASDLLDGADV  204 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESSSC--CTTCEECCTT-------------SCCTTTTTTCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCCC--Cccceeeccc-------------chhHHhcCCCCE
Confidence            68999999999999999999998875       7888888642  2222222332             123567889999


Q ss_pred             EEEeCCCCCC---CCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH-----HHHHHHCCCCCCCcEEee
Q 022227           85 AVMVGGFPRK---EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA-----LILKEFAPSIPAKNITCL  156 (300)
Q Consensus        85 Vi~~ag~~~~---~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~-----~~~~~~~~~~p~~~i~~~  156 (300)
                      ||++|+....   ......++...|+...+++++.+.+.... .++|.+|. +.+..     ..+.+.  ..++..+++.
T Consensus       205 Vih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~-~r~V~~SS-~~vyg~~~~~~~~~E~--~~~~~~~y~~  280 (516)
T 3oh8_A          205 LVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQC-TTMISASA-VGFYGHDRGDEILTEE--SESGDDFLAE  280 (516)
T ss_dssp             EEECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSC-CEEEEEEE-GGGGCSEEEEEEECTT--SCCCSSHHHH
T ss_pred             EEECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEeCc-ceEecCCCCCCccCCC--CCCCcChHHH
Confidence            9999987532   12234567888999999999985544321 25665554 22110     000000  0011112222


Q ss_pred             ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       157 t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      +.....++. ..++..|++..-++...|+|..+
T Consensus       281 ~~~~~E~~~-~~~~~~gi~~~ilRp~~v~Gp~~  312 (516)
T 3oh8_A          281 VCRDWEHAT-APASDAGKRVAFIRTGVALSGRG  312 (516)
T ss_dssp             HHHHHHHTT-HHHHHTTCEEEEEEECEEEBTTB
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEEeeEEECCCC
Confidence            222222222 23456688888888888888654

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=98.64  E-value=4.1e-08  Score=87.29  Aligned_cols=152  Identities=15%  Similarity=0.108  Sum_probs=88.3

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhh--
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA--   78 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a--   78 (300)
                      |+++.++|.||||+|++|++++..|++.|.       +|++.|++.  ++++....++.........++.-..+..++  
T Consensus         1 M~~~~k~vlVTGas~gIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~   71 (281)
T 3m1a_A            1 MSESAKVWLVTGASSGFGRAIAEAAVAAGD-------TVIGTARRT--EALDDLVAAYPDRAEAISLDVTDGERIDVVAA   71 (281)
T ss_dssp             ---CCCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSG--GGGHHHHHHCTTTEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhccCCceEEEeeCCCHHHHHHHHH
Confidence            777778999999999999999999998875       788998863  333322211111000000000000011222  


Q ss_pred             -----cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           79 -----CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        79 -----~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                           +...|++|++||.....   ..+.   ...+..|+..    ++.+.+.+++..  ..++|++|+....       
T Consensus        72 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~-------  142 (281)
T 3m1a_A           72 DVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG--SGSVVNISSFGGQ-------  142 (281)
T ss_dssp             HHHHHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT-------
T ss_pred             HHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCEEEEEcCcccc-------
Confidence                 23789999999975321   2222   3456778777    777777777664  2467777764431       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                        .+.|....|+.++.-...+.+.+++++
T Consensus       143 --~~~~~~~~Y~~sK~a~~~~~~~la~e~  169 (281)
T 3m1a_A          143 --LSFAGFSAYSATKAALEQLSEGLADEV  169 (281)
T ss_dssp             --CCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence              223333356666666667777777775

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=98.63  E-value=7.1e-08  Score=90.94  Aligned_cols=172  Identities=12%  Similarity=0.017  Sum_probs=98.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchh-hhhhhhhhhhhh------------ccCCcccEE
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE-ALNGVKMELVDA------------AFPLLKGVV   70 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~-~l~g~~~dl~~~------------~~~~~~~v~   70 (300)
                      ++++|.||||+|++|++++..|+..|.       +|+++++++... .++.....+...            ......++.
T Consensus        68 ~~~~vlVTGatG~iG~~l~~~L~~~g~-------~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~  140 (427)
T 4f6c_A           68 PLGNTLLTGATGFLGAYLIEALQGYSH-------RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFE  140 (427)
T ss_dssp             CCEEEEEECTTSHHHHHHHHHHTTTEE-------EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC-
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHcCCC-------EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCC
Confidence            356899999999999999999976654       788888865311 111111111110            000011111


Q ss_pred             EeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH---------H
Q 022227           71 ATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI---------L  141 (300)
Q Consensus        71 ~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~---------~  141 (300)
                      -..... ++.++|+||++|+.... ..+..+....|+....++++.+.+ .  ..++|++|.-. + ...         +
T Consensus       141 d~~~l~-~~~~~d~Vih~A~~~~~-~~~~~~~~~~Nv~g~~~l~~aa~~-~--~~~~v~~SS~~-~-G~~~~~~~~~~~~  213 (427)
T 4f6c_A          141 CMDDVV-LPENMDTIIHAGARTDH-FGDDDEFEKVNVQGTVDVIRLAQQ-H--HARLIYVSTIS-V-GTYFDIDTEDVTF  213 (427)
T ss_dssp             --CCCC-CSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH-T--TCEEEEEEEGG-G-GSEECSSCSCCEE
T ss_pred             CcccCC-CcCCCCEEEECCcccCC-CCCHHHHHHHHHHHHHHHHHHHHh-c--CCcEEEECchH-h-CCCccCCCCCccc
Confidence            111222 57899999999987642 234456788899999999999988 3  23566665422 1 000         0


Q ss_pred             HHHCCC--CCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          142 KEFAPS--IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       142 ~~~~~~--~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                      .+..+.  .++...++.++...+++...+++ .|++..-++.-.|+|....
T Consensus       214 ~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~  263 (427)
T 4f6c_A          214 SEADVYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNG  263 (427)
T ss_dssp             CTTCSCSSCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSS
T ss_pred             cccccccCCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCC
Confidence            000000  11223466677777776666554 6888888887778886654

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=98.63  E-value=2.3e-08  Score=100.38  Aligned_cols=172  Identities=13%  Similarity=0.058  Sum_probs=101.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhh---hccC-CcccEEEeCChhhhc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD---AAFP-LLKGVVATTDAVEAC   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~---~~~~-~~~~v~~~~~~~~a~   79 (300)
                      +.++|+||||+|+||++++..|++.|.       +|+++|.....  ......++..   .... ...++.-..+..+++
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~--~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~   80 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGY-------DCVVADNLSNS--TYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVF   80 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSC--CTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEECCCcc--hHHHHHHHhhccCCceEEEEcCCCCHHHHHHHH
Confidence            457999999999999999999998764       78888875321  1101111111   0000 000110011234456


Q ss_pred             C--CCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH--------HHHHCCC
Q 022227           80 T--GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI--------LKEFAPS  147 (300)
Q Consensus        80 ~--~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~--------~~~~~~~  147 (300)
                      +  ++|+||++|+.....  .....+.+..|+.....+++.+++...  .++|++|... +....        +.+. ..
T Consensus        81 ~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~--~~iV~~SS~~-vyg~~~~~~~~~~~~E~-~~  156 (699)
T 1z45_A           81 KEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNV--SKFVFSSSAT-VYGDATRFPNMIPIPEE-CP  156 (699)
T ss_dssp             HHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTC--CEEEEEEEGG-GGCCGGGSTTCCSBCTT-SC
T ss_pred             HhCCCCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCC--CEEEEECcHH-HhCCCccccccCCcccc-CC
Confidence            6  899999999865311  112345778899999999999988753  2566666432 11000        0000 00


Q ss_pred             CCCCcEEeeehhhHHHHHHHHHHH--cCCCCCCeEEEEEecCC
Q 022227          148 IPAKNITCLTRLDHNRALGQISEK--LNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       148 ~p~~~i~~~t~ld~~R~~~~la~~--l~v~~~~V~~~~V~G~h  188 (300)
                      ..+...++.++...+++...+++.  .+++..-++...|+|.+
T Consensus       157 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~  199 (699)
T 1z45_A          157 LGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAH  199 (699)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCC
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCC
Confidence            111234666777777777777766  57777778877778864

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=98.63  E-value=3.3e-08  Score=87.76  Aligned_cols=154  Identities=16%  Similarity=0.172  Sum_probs=94.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC--CCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--GVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~--~aD   83 (300)
                      |||.||||+|++|++++..|+..|.       +|+.+++.+         .|+.+..           ...++++  ++|
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~---------~D~~d~~-----------~~~~~~~~~~~d   58 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY-------DIYPFDKKL---------LDITNIS-----------QVQQVVQEIRPH   58 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE-------EEEEECTTT---------SCTTCHH-----------HHHHHHHHHCCS
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC-------EEEEecccc---------cCCCCHH-----------HHHHHHHhcCCC
Confidence            4899999999999999999987764       788887631         3444433           3445555  699


Q ss_pred             EEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH---HHHHHHCCCCCCCcEEeeeh
Q 022227           84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA---LILKEFAPSIPAKNITCLTR  158 (300)
Q Consensus        84 vVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~---~~~~~~~~~~p~~~i~~~t~  158 (300)
                      +||++|+.....  ..+..+.+..|+....++++.+.+.+   +++|++|...-.-.   ....+. ....+...++.++
T Consensus        59 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~v~~SS~~vy~~~~~~~~~E~-~~~~p~~~Y~~sK  134 (287)
T 3sc6_A           59 IIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVG---AKLVYISTDYVFQGDRPEGYDEF-HNPAPINIYGASK  134 (287)
T ss_dssp             EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHT---CEEEEEEEGGGSCCCCSSCBCTT-SCCCCCSHHHHHH
T ss_pred             EEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEchhhhcCCCCCCCCCCC-CCCCCCCHHHHHH
Confidence            999999876421  13556778899999999999998874   36666664321000   000000 0011122445555


Q ss_pred             hhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceee
Q 022227          159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP  194 (300)
Q Consensus       159 ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p  194 (300)
                      ...+++...    ++.+..-++...|+|......++
T Consensus       135 ~~~E~~~~~----~~~~~~ilR~~~v~G~~~~~~~~  166 (287)
T 3sc6_A          135 YAGEQFVKE----LHNKYFIVRTSWLYGKYGNNFVK  166 (287)
T ss_dssp             HHHHHHHHH----HCSSEEEEEECSEECSSSCCHHH
T ss_pred             HHHHHHHHH----hCCCcEEEeeeeecCCCCCcHHH
Confidence            555444443    34444556666677865544333

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=98.63  E-value=6e-08  Score=87.28  Aligned_cols=157  Identities=17%  Similarity=0.131  Sum_probs=79.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC--Cc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG--VN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~--aD   83 (300)
                      +||+||||+|++|++++..|+..|.       +|+++|++...+.  ....|+.+..           +..+++++  +|
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~--~~~~Dl~d~~-----------~~~~~~~~~~~d   62 (315)
T 2ydy_A            3 RRVLVTGATGLLGRAVHKEFQQNNW-------HAVGCGFRRARPK--FEQVNLLDSN-----------AVHHIIHDFQPH   62 (315)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEC-------------------------------CHHHHHHHCCS
T ss_pred             CeEEEECCCcHHHHHHHHHHHhCCC-------eEEEEccCCCCCC--eEEecCCCHH-----------HHHHHHHhhCCC
Confidence            6899999999999999999998764       7888886532111  1223444322           44556664  89


Q ss_pred             EEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH--HHHHHCCCCCCCcEEeeehh
Q 022227           84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL--ILKEFAPSIPAKNITCLTRL  159 (300)
Q Consensus        84 vVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~--~~~~~~~~~p~~~i~~~t~l  159 (300)
                      +|||+||.....  ..+..+.+..|+.....+++.+.+.+   +++|++|...-.-..  .+.+. ...++...++.++.
T Consensus        63 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~---~~~v~~SS~~v~~~~~~~~~E~-~~~~~~~~Y~~sK~  138 (315)
T 2ydy_A           63 VIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVG---AFLIYISSDYVFDGTNPPYREE-DIPAPLNLYGKTKL  138 (315)
T ss_dssp             EEEECC-------------------CHHHHHHHHHHHHHT---CEEEEEEEGGGSCSSSCSBCTT-SCCCCCSHHHHHHH
T ss_pred             EEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEchHHHcCCCCCCCCCC-CCCCCcCHHHHHHH
Confidence            999999875321  22345567889999999999998864   367777653310000  00000 00111223444454


Q ss_pred             hHHHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          160 DHNRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       160 d~~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                      ..+++    .+.++.+...++...|+|....
T Consensus       139 ~~e~~----~~~~~~~~~~lR~~~v~G~~~~  165 (315)
T 2ydy_A          139 DGEKA----VLENNLGAAVLRIPILYGEVEK  165 (315)
T ss_dssp             HHHHH----HHHHCTTCEEEEECSEECSCSS
T ss_pred             HHHHH----HHHhCCCeEEEeeeeeeCCCCc
Confidence            44433    3444666667777777775443

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=98.62  E-value=1.2e-07  Score=90.97  Aligned_cols=168  Identities=15%  Similarity=0.081  Sum_probs=103.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhc---ccCCCCCCeEEEEEecCCchhhhh-hhhhhhhhh--------ccCCcccEEE
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARG---VMLGTDQPVILHMLDIPPAAEALN-GVKMELVDA--------AFPLLKGVVA   71 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~---~~~~~~~~~~l~L~D~~~~~~~l~-g~~~dl~~~--------~~~~~~~v~~   71 (300)
                      ++++|.||||+|++|++++..|++.   |.       +|+++++.++.+... .....+...        ......++..
T Consensus        72 ~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~-------~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~  144 (478)
T 4dqv_A           72 ELRTVLLTGATGFLGRYLVLELLRRLDVDG-------RLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEV  144 (478)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHHSCTTC-------EEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhcCCCCC-------EEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEE
Confidence            4679999999999999999999987   43       789998865322111 000000000        0000011111


Q ss_pred             -eC------------ChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH
Q 022227           72 -TT------------DAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA  138 (300)
Q Consensus        72 -~~------------~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~  138 (300)
                       ..            ...+.++++|+||++|+....  .+..+.+..|+....++++.+.+...+  ++|++|.- .+..
T Consensus       145 v~~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~~~--~~V~iSS~-~v~~  219 (478)
T 4dqv_A          145 VAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTTKLK--PFTYVSTA-DVGA  219 (478)
T ss_dssp             EECCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSSSCC--CEEEEEEG-GGGT
T ss_pred             EEeECCCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhCCCC--eEEEEeeh-hhcC
Confidence             11            234556789999999987643  333456788999999999999887532  46666642 2100


Q ss_pred             HHHHHHCCC-CCC-----------------CcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecC
Q 022227          139 LILKEFAPS-IPA-----------------KNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN  187 (300)
Q Consensus       139 ~~~~~~~~~-~p~-----------------~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~  187 (300)
                          ...+. +..                 .+.++.++...+++...+++..|++..-++.-.|+|.
T Consensus       220 ----~~~~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~  282 (478)
T 4dqv_A          220 ----AIEPSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILAD  282 (478)
T ss_dssp             ----TSCTTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECC
T ss_pred             ----ccCCCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCC
Confidence                00000 000                 0225667777788888888878999989998888884

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=98.61  E-value=4.7e-08  Score=87.03  Aligned_cols=153  Identities=14%  Similarity=0.187  Sum_probs=93.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC--C
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--G   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~--~   81 (300)
                      +++||+||||+|++|++++..|+..|.       +|+.+++++         .|+.+..           +..++++  +
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~---------~Dl~d~~-----------~~~~~~~~~~   63 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNV-------EVIPTDVQD---------LDITNVL-----------AVNKFFNEKK   63 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSE-------EEEEECTTT---------CCTTCHH-----------HHHHHHHHHC
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCC-------eEEeccCcc---------CCCCCHH-----------HHHHHHHhcC
Confidence            458999999999999999999998764       788888641         3454432           3445566  7


Q ss_pred             CcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH---HHHHHCCCCCCCcEEee
Q 022227           82 VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL---ILKEFAPSIPAKNITCL  156 (300)
Q Consensus        82 aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~---~~~~~~~~~p~~~i~~~  156 (300)
                      +|+||++||.....  ..+..+.+..|+....++++.+.+.+   +++|++|...-.-..   ...+..+ ..+...++.
T Consensus        64 ~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~---~~iv~~SS~~v~~~~~~~~~~E~~~-~~~~~~Y~~  139 (292)
T 1vl0_A           64 PNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG---AEIVQISTDYVFDGEAKEPITEFDE-VNPQSAYGK  139 (292)
T ss_dssp             CSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHT---CEEEEEEEGGGSCSCCSSCBCTTSC-CCCCSHHHH
T ss_pred             CCEEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEechHHeECCCCCCCCCCCCC-CCCccHHHH
Confidence            99999999865311  12345678889999999999998864   367777653210000   0000000 011223444


Q ss_pred             ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCce
Q 022227          157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQ  192 (300)
Q Consensus       157 t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~  192 (300)
                      ++...+++.    +.++.+...++...|+|. +...
T Consensus       140 sK~~~E~~~----~~~~~~~~~lR~~~v~G~-~~~~  170 (292)
T 1vl0_A          140 TKLEGENFV----KALNPKYYIVRTAWLYGD-GNNF  170 (292)
T ss_dssp             HHHHHHHHH----HHHCSSEEEEEECSEESS-SSCH
T ss_pred             HHHHHHHHH----HhhCCCeEEEeeeeeeCC-CcCh
Confidence            555444433    334445566676667887 4433

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.60  E-value=1.9e-07  Score=84.26  Aligned_cols=107  Identities=18%  Similarity=0.201  Sum_probs=69.1

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhh--------hhcc---------
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELV--------DAAF---------   63 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~--------~~~~---------   63 (300)
                      |+++.+||+|+| +|.+|+.++..|+..|+       +|+++|+++  ++++.....+.        ....         
T Consensus        11 ~~~~~~~I~VIG-~G~mG~~iA~~la~~G~-------~V~~~d~~~--~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~   80 (302)
T 1f0y_A           11 KKIIVKHVTVIG-GGLMGAGIAQVAAATGH-------TVVLVDQTE--DILAKSKKGIEESLRKVAKKKFAENPKAGDEF   80 (302)
T ss_dssp             -CCCCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred             ccccCCEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEECCH--HHHHHHHHHHHHHHHHHHHcCCCCccccchhh
Confidence            555567999999 79999999999998775       799999964  44432111010        0000         


Q ss_pred             --CCcccEEEeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCc
Q 022227           64 --PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        64 --~~~~~v~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                        ....++..+++..+++++||+||++.  |            .+..+.+.+.+.+.++.++++  |++||.
T Consensus        81 ~~~~~~~i~~~~~~~~~~~~aD~Vi~av--p------------~~~~~~~~v~~~l~~~~~~~~--iv~s~t  136 (302)
T 1f0y_A           81 VEKTLSTIATSTDAASVVHSTDLVVEAI--V------------ENLKVKNELFKRLDKFAAEHT--IFASNT  136 (302)
T ss_dssp             HHHHHHTEEEESCHHHHTTSCSEEEECC--C------------SCHHHHHHHHHHHTTTSCTTC--EEEECC
T ss_pred             HHHHHhceEEecCHHHhhcCCCEEEEcC--c------------CcHHHHHHHHHHHHhhCCCCe--EEEECC
Confidence              01135677788877999999999984  1            123344566777777776665  334544

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=98.59  E-value=3.6e-08  Score=83.09  Aligned_cols=135  Identities=9%  Similarity=0.037  Sum_probs=84.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc---CC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC---TG   81 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~---~~   81 (300)
                      +|||.||||+|++|++++..|+ .|.       +++++|+++.     ....|+.+..           +..+++   ..
T Consensus         3 kM~vlVtGasg~iG~~~~~~l~-~g~-------~V~~~~r~~~-----~~~~D~~~~~-----------~~~~~~~~~~~   58 (202)
T 3d7l_A            3 AMKILLIGASGTLGSAVKERLE-KKA-------EVITAGRHSG-----DVTVDITNID-----------SIKKMYEQVGK   58 (202)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHT-TTS-------EEEEEESSSS-----SEECCTTCHH-----------HHHHHHHHHCC
T ss_pred             CcEEEEEcCCcHHHHHHHHHHH-CCC-------eEEEEecCcc-----ceeeecCCHH-----------HHHHHHHHhCC
Confidence            3689999999999999999998 764       7899988641     1234554432           122223   35


Q ss_pred             CcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEe
Q 022227           82 VNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC  155 (300)
Q Consensus        82 aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~  155 (300)
                      .|+||++||......   .+.   .+.+..|+.....+.+.+.+.-.+..++|++|+....         .+.|....++
T Consensus        59 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~---------~~~~~~~~Y~  129 (202)
T 3d7l_A           59 VDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMME---------DPIVQGASAA  129 (202)
T ss_dssp             EEEEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGT---------SCCTTCHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhc---------CCCCccHHHH
Confidence            899999999653221   122   3456788888888888887763222466776654321         1233223455


Q ss_pred             eehhhHHHHHHHHHHHc
Q 022227          156 LTRLDHNRALGQISEKL  172 (300)
Q Consensus       156 ~t~ld~~R~~~~la~~l  172 (300)
                      .++.....+.+.+++++
T Consensus       130 ~sK~~~~~~~~~~~~e~  146 (202)
T 3d7l_A          130 MANGAVTAFAKSAAIEM  146 (202)
T ss_dssp             HHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHc
Confidence            55555556666666554

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=98.59  E-value=1.1e-07  Score=82.39  Aligned_cols=116  Identities=17%  Similarity=0.172  Sum_probs=73.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhc--ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARG--VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~--~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      +++++|+|+||+|++|++++..|++.  +.       +|+++++++  ++++.    +.........++.-..+..++++
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~-------~V~~~~r~~--~~~~~----~~~~~~~~~~D~~d~~~~~~~~~   68 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKF-------VAKGLVRSA--QGKEK----IGGEADVFIGDITDADSINPAFQ   68 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTC-------EEEEEESCH--HHHHH----TTCCTTEEECCTTSHHHHHHHHT
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCc-------EEEEEEcCC--Cchhh----cCCCeeEEEecCCCHHHHHHHHc
Confidence            45679999999999999999999987  43       788888753  22221    10000000001100113557788


Q ss_pred             CCcEEEEeCCCCCC------------CCC---cHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCc
Q 022227           81 GVNIAVMVGGFPRK------------EGM---ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        81 ~aDvVi~~ag~~~~------------~g~---~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                      ++|+||++||....            +..   +-.+....|+.....+++.+.+... . ++|++|..
T Consensus        69 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~-~iv~~SS~  134 (253)
T 1xq6_A           69 GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGV-K-HIVVVGSM  134 (253)
T ss_dssp             TCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTC-S-EEEEEEET
T ss_pred             CCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCC-C-EEEEEcCc
Confidence            99999999986421            110   0113467899999999999988753 2 56666643

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=98.58  E-value=6.1e-08  Score=86.47  Aligned_cols=154  Identities=16%  Similarity=0.148  Sum_probs=93.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC--Cc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG--VN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~--aD   83 (300)
                      |||+||||+|++|++++..|+ .|.       +|+.+++++  .   ....|+.+..           +..+++++  +|
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~-------~V~~~~r~~--~---~~~~D~~d~~-----------~~~~~~~~~~~d   56 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVG-------NLIALDVHS--K---EFCGDFSNPK-----------GVAETVRKLRPD   56 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTS-------EEEEECTTC--S---SSCCCTTCHH-----------HHHHHHHHHCCS
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCC-------eEEEecccc--c---cccccCCCHH-----------HHHHHHHhcCCC
Confidence            489999999999999999998 664       788888753  1   1234554432           34556665  99


Q ss_pred             EEEEeCCCCCC--CCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH---HHHHHCCCCCCCcEEeeeh
Q 022227           84 IAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL---ILKEFAPSIPAKNITCLTR  158 (300)
Q Consensus        84 vVi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~---~~~~~~~~~p~~~i~~~t~  158 (300)
                      +|||+|+....  ...+..+....|+....++++.+.+.+   +++|++|...-.-..   ...+. ....+...++.++
T Consensus        57 ~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~---~~~v~~SS~~vy~~~~~~~~~E~-~~~~p~~~Y~~sK  132 (299)
T 1n2s_A           57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETG---AWVVHYSTDYVFPGTGDIPWQET-DATSPLNVYGKTK  132 (299)
T ss_dssp             EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT---CEEEEEEEGGGSCCCTTCCBCTT-SCCCCSSHHHHHH
T ss_pred             EEEECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcC---CcEEEEecccEEeCCCCCCCCCC-CCCCCccHHHHHH
Confidence            99999986531  123456678899999999999998763   467766653210000   00000 0011122344455


Q ss_pred             hhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCc
Q 022227          159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSS  191 (300)
Q Consensus       159 ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~  191 (300)
                      ...+++...    +..+..-++...|+|....+
T Consensus       133 ~~~E~~~~~----~~~~~~ilRp~~v~G~~~~~  161 (299)
T 1n2s_A          133 LAGEKALQD----NCPKHLIFRTSWVYAGKGNN  161 (299)
T ss_dssp             HHHHHHHHH----HCSSEEEEEECSEECSSSCC
T ss_pred             HHHHHHHHH----hCCCeEEEeeeeecCCCcCc
Confidence            554444333    33355556666667876543

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.58  E-value=7.8e-08  Score=96.91  Aligned_cols=166  Identities=16%  Similarity=0.153  Sum_probs=109.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh-hh--hh-hhhh--------hccCCcccEEEe
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN-GV--KM-ELVD--------AAFPLLKGVVAT   72 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~-g~--~~-dl~~--------~~~~~~~~v~~~   72 (300)
                      -.||+|+| +|.+|+.++..++..|+       +|+|+|+++  +.++ +.  .. .+..        ........+..+
T Consensus       316 i~~v~ViG-aG~MG~gIA~~~a~aG~-------~V~l~D~~~--~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  385 (742)
T 3zwc_A          316 VSSVGVLG-LGTMGRGIAISFARVGI-------SVVAVESDP--KQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFS  385 (742)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECSSH--HHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEE
T ss_pred             ccEEEEEc-ccHHHHHHHHHHHhCCC-------chhcccchH--hhhhhHHHHHHHHHHHHHHhccccchhhhhhhhccc
Confidence            36999999 79999999999998886       899999974  3332 11  00 0100        001123456666


Q ss_pred             CChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh-HHHHHHHHCCC----
Q 022227           73 TDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT-NALILKEFAPS----  147 (300)
Q Consensus        73 ~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~-~~~~~~~~~~~----  147 (300)
                      ++ ++++++||+||.+.              -+|+++.+++.+.+++++++++  |++||++.+ ++.++ +....    
T Consensus       386 ~~-~~~l~~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~a--IlASNTSsl~i~~ia-~~~~~p~r~  447 (742)
T 3zwc_A          386 SS-TKELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGA--FLCTNTSALNVDDIA-SSTDRPQLV  447 (742)
T ss_dssp             SC-GGGGGSCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTC--EEEECCSSSCHHHHH-TTSSCGGGE
T ss_pred             Cc-HHHHhhCCEEEEec--------------cccHHHHHHHHHHHhhcCCCCc--eEEecCCcCChHHHH-hhcCCcccc
Confidence            66 57799999999973              3577888999999999999885  888998763 33333 22111    


Q ss_pred             -----C-CCCc------EEe-eehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC-ceeeecccee
Q 022227          148 -----I-PAKN------ITC-LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHAT  200 (300)
Q Consensus       148 -----~-p~~~------i~~-~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~-~~~p~~s~a~  200 (300)
                           | |+..      |.+ .|.-++......+++++|..|.-++..  -|+.++ -+.|.+..+.
T Consensus       448 ig~HFfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV~vkd~--pGFi~NRi~~~~~~ea~  512 (742)
T 3zwc_A          448 IGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNC--YGFVGNRMLAPYYNQGF  512 (742)
T ss_dssp             EEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEECCCS--TTTTHHHHHHHHHHHHH
T ss_pred             ccccccCCCCCCceEEEecCCCCCHHHHHHHHHHHHHhCCCCcccCCC--CCccHHHHhhHHHHHHH
Confidence                 1 3321      222 377777667778899999888666543  476666 3555555554

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=98.57  E-value=1.2e-07  Score=81.08  Aligned_cols=101  Identities=14%  Similarity=0.119  Sum_probs=63.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHH-hcccCCCCCCeEEEEEecCCchh-hhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIA-RGVMLGTDQPVILHMLDIPPAAE-ALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~-~~~~~~~~~~~~l~L~D~~~~~~-~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ++|+||||+|++|+.++..|+ ..|.       +|+++++++  + +++..... .........++.-..+..++++++|
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-------~V~~~~r~~--~~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d   75 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-------HITLYGRQL--KTRIPPEIID-HERVTVIEGSFQNPGXLEQAVTNAE   75 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-------EEEEEESSH--HHHSCHHHHT-STTEEEEECCTTCHHHHHHHHTTCS
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-------eEEEEecCc--cccchhhccC-CCceEEEECCCCCHHHHHHHHcCCC
Confidence            359999999999999999999 7764       788998863  3 33321100 0000000011111123466789999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      +||++||..             |.. .+.+++.+++.+. . ++|++|.
T Consensus        76 ~vv~~ag~~-------------n~~-~~~~~~~~~~~~~-~-~iv~iSs  108 (221)
T 3r6d_A           76 VVFVGAMES-------------GSD-MASIVKALSRXNI-R-RVIGVSM  108 (221)
T ss_dssp             EEEESCCCC-------------HHH-HHHHHHHHHHTTC-C-EEEEEEE
T ss_pred             EEEEcCCCC-------------Chh-HHHHHHHHHhcCC-C-eEEEEee
Confidence            999999753             334 7888888887653 2 5666664

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=98.57  E-value=9.9e-08  Score=83.66  Aligned_cols=156  Identities=12%  Similarity=0.028  Sum_probs=93.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      ++|.||||+|.+|.+++..|++.|.       +|+++|+++..........|+.+....  ..  ......+.+...|++
T Consensus        23 k~vlITGas~gIG~~la~~l~~~G~-------~V~~~~r~~~~~~~~~~~~d~~d~~~v--~~--~~~~~~~~~g~iD~l   91 (251)
T 3orf_A           23 KNILVLGGSGALGAEVVKFFKSKSW-------NTISIDFRENPNADHSFTIKDSGEEEI--KS--VIEKINSKSIKVDTF   91 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCCTTSSEEEECSCSSHHHH--HH--HHHHHHTTTCCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCcccccccceEEEeCCHHHH--HH--HHHHHHHHcCCCCEE
Confidence            5899999999999999999998875       799999875321111122232221100  00  000112223467999


Q ss_pred             EEeCCCCCCC----CCc---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeeh
Q 022227           86 VMVGGFPRKE----GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR  158 (300)
Q Consensus        86 i~~ag~~~~~----g~~---r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~  158 (300)
                      |+.||.....    ..+   -...+..|+.....+.+.+.+.-.+..++|++|+....         .+.|....++.++
T Consensus        92 i~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~---------~~~~~~~~Y~~sK  162 (251)
T 3orf_A           92 VCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAAL---------NRTSGMIAYGATK  162 (251)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG---------SCCTTBHHHHHHH
T ss_pred             EECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhc---------cCCCCCchhHHHH
Confidence            9999974321    122   23456788888888888777654333467777765431         1233233456666


Q ss_pred             hhHHHHHHHHHHHcCCCCCCeEE
Q 022227          159 LDHNRALGQISEKLNVQVSDVKN  181 (300)
Q Consensus       159 ld~~R~~~~la~~l~v~~~~V~~  181 (300)
                      .-...+.+.++++++..+..|+.
T Consensus       163 aa~~~~~~~la~e~~~~~~gi~v  185 (251)
T 3orf_A          163 AATHHIIKDLASENGGLPAGSTS  185 (251)
T ss_dssp             HHHHHHHHHHTSTTSSSCTTCEE
T ss_pred             HHHHHHHHHHHHHhcccCCCcEE
Confidence            66667777788776644556653

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=98.57  E-value=4.1e-07  Score=78.90  Aligned_cols=108  Identities=18%  Similarity=0.118  Sum_probs=72.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh-hhhhhhhhhccCCcccEEEeCChhhhc----C
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN-GVKMELVDAAFPLLKGVVATTDAVEAC----T   80 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~-g~~~dl~~~~~~~~~~v~~~~~~~~a~----~   80 (300)
                      ++|+||||+|++|++++..|+..|.       +|+++|+++.  +++ ....|+.+..           +..+++    .
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~~~~~~D~~~~~-----------~~~~~~~~~~~   61 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH-------TVIGIDRGQA--DIEADLSTPGGRET-----------AVAAVLDRCGG   61 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSSS--SEECCTTSHHHHHH-----------HHHHHHHHHTT
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC-------EEEEEeCChh--HccccccCCcccHH-----------HHHHHHHHcCC
Confidence            4799999999999999999998874       7899988642  221 1344555433           222333    4


Q ss_pred             CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCch
Q 022227           81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPA  134 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~  134 (300)
                      +.|+||++||.... ..+..+.+..|+.....+.+.+.+..  .+..++|++|+..
T Consensus        62 ~~d~vi~~Ag~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~  116 (255)
T 2dkn_A           62 VLDGLVCCAGVGVT-AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIA  116 (255)
T ss_dssp             CCSEEEECCCCCTT-SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGG
T ss_pred             CccEEEECCCCCCc-chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccc
Confidence            89999999997642 23345667888888888887666541  1124677777543

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=98.56  E-value=3.3e-08  Score=87.89  Aligned_cols=154  Identities=14%  Similarity=0.101  Sum_probs=88.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch--hhhhhhhhhhhhhccCCcccEEEeCChhhhcCC-
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--EALNGVKMELVDAAFPLLKGVVATTDAVEACTG-   81 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~--~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~-   81 (300)
                      ++||+||| +|++|++++..|+..|.       +|+.+++++..  ..++-...|+.+..           +..+++++ 
T Consensus         3 ~~~ilVtG-aG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~Dl~d~~-----------~~~~~~~~~   63 (286)
T 3gpi_A            3 LSKILIAG-CGDLGLELARRLTAQGH-------EVTGLRRSAQPMPAGVQTLIADVTRPD-----------TLASIVHLR   63 (286)
T ss_dssp             CCCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEECTTSCCCTTCCEEECCTTCGG-----------GCTTGGGGC
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEeCCccccccCCceEEccCCChH-----------HHHHhhcCC
Confidence            46899999 69999999999998874       68888876421  01111123333322           33455666 


Q ss_pred             CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCCcEEeee
Q 022227           82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLT  157 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~~i~~~t  157 (300)
                      +|+||++|+...   .+..+....|+...+++++.+.+.+.  .++|.+|... +...    .+.+. ....+...++.+
T Consensus        64 ~d~vih~a~~~~---~~~~~~~~~n~~~~~~ll~a~~~~~~--~~~v~~SS~~-vyg~~~~~~~~E~-~~~~p~~~Y~~s  136 (286)
T 3gpi_A           64 PEILVYCVAASE---YSDEHYRLSYVEGLRNTLSALEGAPL--QHVFFVSSTG-VYGQEVEEWLDED-TPPIAKDFSGKR  136 (286)
T ss_dssp             CSEEEECHHHHH---HC-----CCSHHHHHHHHHHTTTSCC--CEEEEEEEGG-GCCCCCSSEECTT-SCCCCCSHHHHH
T ss_pred             CCEEEEeCCCCC---CCHHHHHHHHHHHHHHHHHHHhhCCC--CEEEEEcccE-EEcCCCCCCCCCC-CCCCCCChhhHH
Confidence            999999997642   22344567799999999999987543  2566666432 1000    00000 001112234555


Q ss_pred             hhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       158 ~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                      +...+++     ... ++..-++...|+|....
T Consensus       137 K~~~E~~-----~~~-~~~~ilR~~~v~G~~~~  163 (286)
T 3gpi_A          137 MLEAEAL-----LAA-YSSTILRFSGIYGPGRL  163 (286)
T ss_dssp             HHHHHHH-----GGG-SSEEEEEECEEEBTTBC
T ss_pred             HHHHHHH-----Hhc-CCeEEEecccccCCCch
Confidence            5554444     222 66667777778886554

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.55  E-value=2.8e-07  Score=82.48  Aligned_cols=101  Identities=18%  Similarity=0.206  Sum_probs=67.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc----------c-----CCcc
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA----------F-----PLLK   67 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~----------~-----~~~~   67 (300)
                      |+.+||+|+| +|.+|+.++..|+..|+       +|+++|+++  ++++.....+....          .     ....
T Consensus         2 m~~~kV~VIG-aG~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~   71 (283)
T 4e12_A            2 TGITNVTVLG-TGVLGSQIAFQTAFHGF-------AVTAYDINT--DALDAAKKRFEGLAAVYEKEVAGAADGAAQKALG   71 (283)
T ss_dssp             CSCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSH--HHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHH
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHc
Confidence            3457999999 79999999999998875       799999864  44432222111100          0     0113


Q ss_pred             cEEEeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEE
Q 022227           68 GVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKV  127 (300)
Q Consensus        68 ~v~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~v  127 (300)
                      ++..+++..+++++||+||.+..              .+.+..+++.+.+.+..++++.+
T Consensus        72 ~i~~~~~~~~~~~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~il  117 (283)
T 4e12_A           72 GIRYSDDLAQAVKDADLVIEAVP--------------ESLDLKRDIYTKLGELAPAKTIF  117 (283)
T ss_dssp             HCEEESCHHHHTTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             CeEEeCCHHHHhccCCEEEEecc--------------CcHHHHHHHHHHHHhhCCCCcEE
Confidence            45667788888999999999852              12345566667777777767633

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=98.54  E-value=2.1e-07  Score=80.64  Aligned_cols=97  Identities=15%  Similarity=0.178  Sum_probs=64.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcc-cCCCCCCeEEEEEecCCchhhhhh--------hhhhhhhhccCCcccEEEeC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGV-MLGTDQPVILHMLDIPPAAEALNG--------VKMELVDAAFPLLKGVVATT   73 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~-~~~~~~~~~l~L~D~~~~~~~l~g--------~~~dl~~~~~~~~~~v~~~~   73 (300)
                      +.+++|+||||+|++|++++..|+..| .       +|+++++++  +++..        ...|+.+.           .
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~-------~V~~~~R~~--~~~~~~~~~~~~~~~~Dl~d~-----------~   80 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTI-------KQTLFARQP--AKIHKPYPTNSQIIMGDVLNH-----------A   80 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTE-------EEEEEESSG--GGSCSSCCTTEEEEECCTTCH-----------H
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCc-------eEEEEEcCh--hhhcccccCCcEEEEecCCCH-----------H
Confidence            445789999999999999999999876 4       788888864  22221        11122221           2


Q ss_pred             ChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCc
Q 022227           74 DAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        74 ~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                      +..++++++|+||+++|...      .+      ...+.+++.+++.+.  .++|++|..
T Consensus        81 ~~~~~~~~~D~vv~~a~~~~------~~------~~~~~~~~~~~~~~~--~~iV~iSS~  126 (236)
T 3qvo_A           81 ALKQAMQGQDIVYANLTGED------LD------IQANSVIAAMKACDV--KRLIFVLSL  126 (236)
T ss_dssp             HHHHHHTTCSEEEEECCSTT------HH------HHHHHHHHHHHHTTC--CEEEEECCC
T ss_pred             HHHHHhcCCCEEEEcCCCCc------hh------HHHHHHHHHHHHcCC--CEEEEEecc
Confidence            45677899999999987521      11      224577777777653  257777653

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=98.50  E-value=2.7e-07  Score=81.97  Aligned_cols=97  Identities=15%  Similarity=0.267  Sum_probs=66.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCchhhhhh--------hhhhhhhhccCCcccEEEeCChh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNG--------VKMELVDAAFPLLKGVVATTDAV   76 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~-~~~~~~~~~~l~L~D~~~~~~~l~g--------~~~dl~~~~~~~~~~v~~~~~~~   76 (300)
                      |||+||||+|++|++++..|... +.       +|+++++++  +++..        ...|+.+.           .+..
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~-------~V~~~~R~~--~~~~~~~~~~v~~~~~D~~d~-----------~~l~   60 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID-------HFHIGVRNV--EKVPDDWRGKVSVRQLDYFNQ-----------ESMV   60 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT-------TEEEEESSG--GGSCGGGBTTBEEEECCTTCH-----------HHHH
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC-------cEEEEECCH--HHHHHhhhCCCEEEEcCCCCH-----------HHHH
Confidence            48999999999999999998875 43       578887754  22221        11122221           2456


Q ss_pred             hhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      ++++++|+||++|+....        ...|+...+++++.+++.+.+  ++|.+|.
T Consensus        61 ~~~~~~d~vi~~a~~~~~--------~~~~~~~~~~l~~aa~~~gv~--~iv~~Ss  106 (289)
T 3e48_A           61 EAFKGMDTVVFIPSIIHP--------SFKRIPEVENLVYAAKQSGVA--HIIFIGY  106 (289)
T ss_dssp             HHTTTCSEEEECCCCCCS--------HHHHHHHHHHHHHHHHHTTCC--EEEEEEE
T ss_pred             HHHhCCCEEEEeCCCCcc--------chhhHHHHHHHHHHHHHcCCC--EEEEEcc
Confidence            789999999999976421        234788889999999887532  5666654

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.50  E-value=2e-07  Score=80.41  Aligned_cols=140  Identities=16%  Similarity=0.030  Sum_probs=84.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhh------c
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA------C   79 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a------~   79 (300)
                      ++|+||||+|++|.+++..|++.|.       +++++|+++..+.+.....|+.+..           +..++      +
T Consensus         3 k~vlVtGasggiG~~la~~l~~~G~-------~V~~~~r~~~~~~~~~~~~D~~~~~-----------~~~~~~~~~~~~   64 (242)
T 1uay_A            3 RSALVTGGASGLGRAAALALKARGY-------RVVVLDLRREGEDLIYVEGDVTREE-----------DVRRAVARAQEE   64 (242)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC-------EEEEEESSCCSSSSEEEECCTTCHH-----------HHHHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEccCccccceEEEeCCCCCHH-----------HHHHHHHHHHhh
Confidence            5899999999999999999998875       7889988642122222233444332           12222      3


Q ss_pred             CCCcEEEEeCCCCCCCC------C----cHHHHHHhhHHHHHHHHHHHhhhcCC--------CeEEEEecCchhhHHHHH
Q 022227           80 TGVNIAVMVGGFPRKEG------M----ERKDVMSKNVSIYKAQASALEQHAAP--------NCKVLVVANPANTNALIL  141 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~g------~----~r~dl~~~N~~i~~~i~~~i~~~~~~--------~~~viv~sNP~~~~~~~~  141 (300)
                      ...|++|++||......      +    +-.+.+..|+.....+.+.+.+.-.+        ..++|++|+....     
T Consensus        65 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~-----  139 (242)
T 1uay_A           65 APLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAF-----  139 (242)
T ss_dssp             SCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHH-----
T ss_pred             CCceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc-----
Confidence            37899999998753221      1    22445677877777777666554211        1267777654321     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                        .  +.|....++.++.....+.+.+++++
T Consensus       140 --~--~~~~~~~Y~~sK~a~~~~~~~l~~e~  166 (242)
T 1uay_A          140 --E--GQIGQAAYAASKGGVVALTLPAAREL  166 (242)
T ss_dssp             --H--CCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --c--CCCCCchhhHHHHHHHHHHHHHHHHH
Confidence              1  12222345555555556666667665

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.50  E-value=8.2e-07  Score=82.22  Aligned_cols=109  Identities=17%  Similarity=0.224  Sum_probs=74.0

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh----ccCCcccEEEeCChh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA----AFPLLKGVVATTDAV   76 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~----~~~~~~~v~~~~~~~   76 (300)
                      |++++|||+|+| +|.+|..++..|...|.       ++.++|+++  ++++....+-...    ...+..++..+++..
T Consensus        25 m~~~~mkI~VIG-aG~mG~alA~~La~~G~-------~V~l~~r~~--~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~   94 (356)
T 3k96_A           25 MEPFKHPIAILG-AGSWGTALALVLARKGQ-------KVRLWSYES--DHVDEMQAEGVNNRYLPNYPFPETLKAYCDLK   94 (356)
T ss_dssp             --CCCSCEEEEC-CSHHHHHHHHHHHTTTC-------CEEEECSCH--HHHHHHHHHSSBTTTBTTCCCCTTEEEESCHH
T ss_pred             ccccCCeEEEEC-ccHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHcCCCcccCCCCccCCCeEEECCHH
Confidence            555668999999 79999999999998764       689999863  3333221110000    011234677888888


Q ss_pred             hhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      +++++||+||++.  |              ...++++++.+..+.+++..+|.++|...
T Consensus        95 ea~~~aDvVilaV--p--------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi~  137 (356)
T 3k96_A           95 ASLEGVTDILIVV--P--------------SFAFHEVITRMKPLIDAKTRIAWGTKGLA  137 (356)
T ss_dssp             HHHTTCCEEEECC--C--------------HHHHHHHHHHHGGGCCTTCEEEECCCSCB
T ss_pred             HHHhcCCEEEECC--C--------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            8999999999973  1              12456777788877766777777777554

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=98.49  E-value=1.9e-07  Score=93.13  Aligned_cols=170  Identities=14%  Similarity=0.102  Sum_probs=102.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-CCcccEEEeCC-hhhhcC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTD-AVEACT   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~-~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-~~~~~v~~~~~-~~~a~~   80 (300)
                      ++++|.||||+|++|++++..|+.. |.       +|+++|+.+  +.+...   +..... ....++.-..+ ..++++
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~-------~V~~~~r~~--~~~~~~---~~~~~v~~v~~Dl~d~~~~~~~~~~  381 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHY-------EVYGLDIGS--DAISRF---LNHPHFHFVEGDISIHSEWIEYHVK  381 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSE-------EEEEEESCC--TTTGGG---TTCTTEEEEECCTTTCHHHHHHHHH
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCC-------EEEEEEcCc--hhhhhh---ccCCceEEEECCCCCcHHHHHHhhc
Confidence            4578999999999999999999986 54       788888764  222110   000000 00000000001 234677


Q ss_pred             CCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCC---C---
Q 022227           81 GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPS---I---  148 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~---~---  148 (300)
                      ++|+|||+|+.....  ..+..+.+..|+....++++.+.+.+   .++|++|...- ...    .+.+..+.   .   
T Consensus       382 ~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~---~r~V~~SS~~v-yg~~~~~~~~E~~~~~~~~p~~  457 (660)
T 1z7e_A          382 KCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR---KRIIFPSTSEV-YGMCSDKYFDEDHSNLIVGPVN  457 (660)
T ss_dssp             HCSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT---CEEEEECCGGG-GBTCCSSSBCTTTCCEEECCTT
T ss_pred             CCCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC---CEEEEEecHHH-cCCCCCcccCCCccccccCccc
Confidence            899999999865321  12345667889999999999998874   36777775321 100    00000000   0   


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ++...++.++...+++...+++..|++..-++...|+|...
T Consensus       458 ~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~  498 (660)
T 1z7e_A          458 KPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRL  498 (660)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTS
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCc
Confidence            11124566777777777777777899888888777888653

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=98.48  E-value=1.7e-06  Score=75.44  Aligned_cols=155  Identities=21%  Similarity=0.205  Sum_probs=89.2

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE   77 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~   77 (300)
                      |+.+.+++.||||+|.+|.+++..|++.|.       +++++|+++  ++++....++......   ...++.-..+..+
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~   75 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGA-------AVVVADINA--EAAEAVAKQIVADGGTAISVAVDVSDPESAKA   75 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCEEEEEECCTTSHHHHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence            455667899999999999999999999875       799999863  4444333333221100   0000000001112


Q ss_pred             -------hcCCCcEEEEeCCCC---CC---CCCcH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhH
Q 022227           78 -------ACTGVNIAVMVGGFP---RK---EGMER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTN  137 (300)
Q Consensus        78 -------a~~~aDvVi~~ag~~---~~---~g~~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~  137 (300)
                             .+...|++|+.||..   ..   ...+.   .+.+..|+..    ++.+.+.+.+..  ..++|++|+.... 
T Consensus        76 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~-  152 (253)
T 3qiv_A           76 MADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG--GGAIVNQSSTAAW-  152 (253)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECC-----
T ss_pred             HHHHHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CCEEEEECCcccc-
Confidence                   233789999999873   11   11222   3456778776    566666666654  3467777764421 


Q ss_pred             HHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          138 ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       138 ~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                                 +....|+.++.-...+.+.+++++.  +..|+
T Consensus       153 -----------~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~  182 (253)
T 3qiv_A          153 -----------LYSNYYGLAKVGINGLTQQLSRELG--GRNIR  182 (253)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTT--TTTEE
T ss_pred             -----------CCCchhHHHHHHHHHHHHHHHHHHh--hcCeE
Confidence                       1123467777777788888888875  33454

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.47  E-value=4.6e-07  Score=78.44  Aligned_cols=155  Identities=12%  Similarity=0.064  Sum_probs=91.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh----hhhhhhhhccCCcccEEEeCChhhhc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG----VKMELVDAAFPLLKGVVATTDAVEAC   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g----~~~dl~~~~~~~~~~v~~~~~~~~a~   79 (300)
                      +.++|.||||+|.+|.+++..|++.|.       +|+++|+++.  ++..    ...|+.+....  ..  ......+.+
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~~~D~~~~~~~--~~--~~~~~~~~~   68 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGY-------TVLNIDLSAN--DQADSNILVDGNKNWTEQE--QS--ILEQTASSL   68 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTE-------EEEEEESSCC--TTSSEEEECCTTSCHHHHH--HH--HHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEecCcc--ccccccEEEeCCCCCHHHH--HH--HHHHHHHHh
Confidence            345899999999999999999999875       7899998642  2211    12333332200  00  000111223


Q ss_pred             --CCCcEEEEeCCCCCCC----CCc---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCC
Q 022227           80 --TGVNIAVMVGGFPRKE----GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPA  150 (300)
Q Consensus        80 --~~aDvVi~~ag~~~~~----g~~---r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~  150 (300)
                        .+.|++|+.||.....    ..+   -...+..|+.....+.+.+.++-.+..++|++|+....         .+.|.
T Consensus        69 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~---------~~~~~  139 (236)
T 1ooe_A           69 QGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM---------GPTPS  139 (236)
T ss_dssp             TTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG---------SCCTT
T ss_pred             CCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhc---------cCCCC
Confidence              4789999999975321    111   23457788888888877776653223467777765431         12232


Q ss_pred             CcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          151 KNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       151 ~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      ...++.++.-...+.+.++++++..+..|+
T Consensus       140 ~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~  169 (236)
T 1ooe_A          140 MIGYGMAKAAVHHLTSSLAAKDSGLPDNSA  169 (236)
T ss_dssp             BHHHHHHHHHHHHHHHHHHSTTSSCCTTCE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcccCCCeE
Confidence            234555665566677777777653355565

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=98.47  E-value=4.7e-07  Score=78.89  Aligned_cols=150  Identities=19%  Similarity=0.181  Sum_probs=83.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc-cCCcccEEEeCChhhh---
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FPLLKGVVATTDAVEA---   78 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~-~~~~~~v~~~~~~~~a---   78 (300)
                      ++.++|.||||+|++|.+++..|++.|.       +|+++|+++  ++++....++.... .....++.-..+..++   
T Consensus         9 ~~~k~vlITGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   79 (254)
T 2wsb_A            9 LDGACAAVTGAGSGIGLEICRAFAASGA-------RLILIDREA--AALDRAAQELGAAVAARIVADVTDAEAMTAAAAE   79 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcccceeEEEEecCCHHHHHHHHHH
Confidence            3456899999999999999999998875       789999863  33332222221000 0000000000011222   


Q ss_pred             ---cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHC
Q 022227           79 ---CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        79 ---~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                         +...|+||+.||.....   ..+.   .+.+..|+..    ++.+.+.+++..  ..++|++|+....         
T Consensus        80 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~---------  148 (254)
T 2wsb_A           80 AEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG--AGAIVNLGSMSGT---------  148 (254)
T ss_dssp             HHHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------
T ss_pred             HHhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEecchhc---------
Confidence               35789999999975321   1122   3456677766    444445555543  3467777765431         


Q ss_pred             CCCCCC--cEEeeehhhHHHHHHHHHHHc
Q 022227          146 PSIPAK--NITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       146 ~~~p~~--~i~~~t~ld~~R~~~~la~~l  172 (300)
                      .+.|..  ..++.++.....+.+.+++++
T Consensus       149 ~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~  177 (254)
T 2wsb_A          149 IVNRPQFASSYMASKGAVHQLTRALAAEW  177 (254)
T ss_dssp             SCCSSSCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            112222  234555655566666677765

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=98.47  E-value=3.1e-07  Score=84.65  Aligned_cols=152  Identities=15%  Similarity=0.090  Sum_probs=84.6

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh--ccCCccc-EEEeCChhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA--AFPLLKG-VVATTDAVE   77 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~--~~~~~~~-v~~~~~~~~   77 (300)
                      |++++++|+||||+|++|++++..|+..|.       +|++++++++.  ..  ..++...  ......+ +.-..+..+
T Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~R~~~~--~~--~~~l~~~~~v~~v~~D~l~d~~~l~~   69 (352)
T 1xgk_A            1 MAQQKKTIAVVGATGRQGASLIRVAAAVGH-------HVRAQVHSLKG--LI--AEELQAIPNVTLFQGPLLNNVPLMDT   69 (352)
T ss_dssp             --CCCCCEEEESTTSHHHHHHHHHHHHTTC-------CEEEEESCSCS--HH--HHHHHTSTTEEEEESCCTTCHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHhCCC-------EEEEEECCCCh--hh--HHHHhhcCCcEEEECCccCCHHHHHH
Confidence            666678999999999999999999998764       68888876422  11  0111110  0000001 100113566


Q ss_pred             hcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEee
Q 022227           78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALILKEFAPSIPAKNITCL  156 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~  156 (300)
                      +++++|+||++++...   .      ..|... +++++.+++.+ . . ++|.+|.....      .+ ...+ ...++.
T Consensus        70 ~~~~~d~Vi~~a~~~~---~------~~~~~~-~~l~~aa~~~g~v-~-~~V~~SS~~~~------~~-~~~~-~~~y~~  129 (352)
T 1xgk_A           70 LFEGAHLAFINTTSQA---G------DEIAIG-KDLADAAKRAGTI-Q-HYIYSSMPDHS------LY-GPWP-AVPMWA  129 (352)
T ss_dssp             HHTTCSEEEECCCSTT---S------CHHHHH-HHHHHHHHHHSCC-S-EEEEEECCCGG------GT-SSCC-CCTTTH
T ss_pred             HHhcCCEEEEcCCCCC---c------HHHHHH-HHHHHHHHHcCCc-c-EEEEeCCcccc------cc-CCCC-CccHHH
Confidence            7899999999876431   1      125444 88888888875 3 2 57777755410      11 1111 122233


Q ss_pred             ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       157 t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      ++...    ..+.+.++++..-++. .++|..
T Consensus       130 sK~~~----E~~~~~~gi~~~ivrp-g~~g~~  156 (352)
T 1xgk_A          130 PKFTV----ENYVRQLGLPSTFVYA-GIYNNN  156 (352)
T ss_dssp             HHHHH----HHHHHTSSSCEEEEEE-CEEGGG
T ss_pred             HHHHH----HHHHHHcCCCEEEEec-ceecCC
Confidence            44333    3334446887777774 457754

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=98.45  E-value=5.4e-07  Score=79.20  Aligned_cols=151  Identities=21%  Similarity=0.168  Sum_probs=86.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC----   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~----   79 (300)
                      +.+++.||||+|+||.+++..|++.|.       +|++.|++.  ++++....++.........++.-..+..+++    
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   77 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA-------TVAIADIDI--ERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATV   77 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHH
Confidence            457899999999999999999999875       789999863  4444333333111100000110011122223    


Q ss_pred             ---CCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           80 ---TGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        80 ---~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                         .+.|++|+.||......   .+.   ...+..|+.....+.+.+    .+... ..++|++|+....         .
T Consensus        78 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~---------~  147 (259)
T 4e6p_A           78 EHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGR-GGKIINMASQAGR---------R  147 (259)
T ss_dssp             HHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGT---------S
T ss_pred             HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEECChhhc---------c
Confidence               38999999999753211   122   345667776555555444    34332 3578888765431         1


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      +.|....|+.++.-...+.+.++.+++
T Consensus       148 ~~~~~~~Y~asK~a~~~~~~~la~e~~  174 (259)
T 4e6p_A          148 GEALVAIYCATKAAVISLTQSAGLDLI  174 (259)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHhh
Confidence            233233456666666677777887764

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.45  E-value=1e-06  Score=84.07  Aligned_cols=146  Identities=14%  Similarity=0.080  Sum_probs=88.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhh----hhhh-hc------cCCcccEEEe
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM----ELVD-AA------FPLLKGVVAT   72 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~----dl~~-~~------~~~~~~v~~~   72 (300)
                      +.+||+||| +|.+|+.++..|+..|+       +|+++|+++  ++......    .+.. ..      .....+++.+
T Consensus        53 ~i~kVaVIG-aG~MG~~IA~~la~aG~-------~V~l~D~~~--e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t  122 (460)
T 3k6j_A           53 DVNSVAIIG-GGTMGKAMAICFGLAGI-------ETFLVVRNE--QRCKQELEVMYAREKSFKRLNDKRIEKINANLKIT  122 (460)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEECcH--HHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe
Confidence            347999999 79999999999998875       899999974  32211110    0101 00      0123467777


Q ss_pred             CChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh-hHHHHHHHHCCC----
Q 022227           73 TDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN-TNALILKEFAPS----  147 (300)
Q Consensus        73 ~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~-~~~~~~~~~~~~----  147 (300)
                      +++ +++++||+||.+.-              .+..+.+++.+.+.+++++++  |++||.+. .++.+.... +.    
T Consensus       123 ~dl-~al~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~a--IlasnTSsl~i~~ia~~~-~~p~r~  184 (460)
T 3k6j_A          123 SDF-HKLSNCDLIVESVI--------------EDMKLKKELFANLENICKSTC--IFGTNTSSLDLNEISSVL-RDPSNL  184 (460)
T ss_dssp             SCG-GGCTTCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTC--EEEECCSSSCHHHHHTTS-SSGGGE
T ss_pred             CCH-HHHccCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCC--EEEecCCChhHHHHHHhc-cCCcce
Confidence            776 58999999999841              244566777788888888776  34455443 223332211 11    


Q ss_pred             -----C-CCCc-----EEee--ehhhHHHHHHHHHHHcCCCCC
Q 022227          148 -----I-PAKN-----ITCL--TRLDHNRALGQISEKLNVQVS  177 (300)
Q Consensus       148 -----~-p~~~-----i~~~--t~ld~~R~~~~la~~l~v~~~  177 (300)
                           + |...     +..+  |.-++......+++.+|..|.
T Consensus       185 iG~HffnPv~~m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v  227 (460)
T 3k6j_A          185 VGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPV  227 (460)
T ss_dssp             EEEECCSSTTTCCEEEEECCSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             EEEEecchhhhCCEEEEEeCCCCCHHHHHHHHHHHHHhCCEEE
Confidence                 1 3222     2222  455555555667788886553

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=98.44  E-value=3.1e-07  Score=80.28  Aligned_cols=152  Identities=14%  Similarity=0.125  Sum_probs=84.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhhc
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC   79 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a~   79 (300)
                      ++.++|.||||+|++|++++..|++.|.       +|+++|+++  ++++....++......   ...++.-..+..+++
T Consensus        11 l~~k~vlItGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~   81 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALAEAGA-------RVIIADLDE--AMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAV   81 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence            3457899999999999999999998874       799999863  3333222233221100   000100001122223


Q ss_pred             -------CCCcEEEEeCCCCC-C-C--CCcH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCchhhHHHHHHH
Q 022227           80 -------TGVNIAVMVGGFPR-K-E--GMER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        80 -------~~aDvVi~~ag~~~-~-~--g~~r---~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~~~~~~~~~~  143 (300)
                             ...|+||+.||... . +  ..+.   .+.+..|+.....+.+.+.++-  .+..+++++|+....       
T Consensus        82 ~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~-------  154 (260)
T 3awd_A           82 RSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGL-------  154 (260)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT-------
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhc-------
Confidence                   37899999998754 1 1  1222   3456678777666665554321  013467777754321       


Q ss_pred             HCCCCCCC--cEEeeehhhHHHHHHHHHHHc
Q 022227          144 FAPSIPAK--NITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       144 ~~~~~p~~--~i~~~t~ld~~R~~~~la~~l  172 (300)
                        .+.|..  ..++.++.....+...+++++
T Consensus       155 --~~~~~~~~~~Y~~sK~a~~~~~~~l~~e~  183 (260)
T 3awd_A          155 --IVNRPQQQAAYNASKAGVHQYIRSLAAEW  183 (260)
T ss_dssp             --SCCSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --ccCCCCCccccHHHHHHHHHHHHHHHHHh
Confidence              112222  345566666666667777764

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=98.44  E-value=8.2e-07  Score=77.26  Aligned_cols=151  Identities=15%  Similarity=0.103  Sum_probs=86.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC---cccEEEeCChhhhc
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAVEAC   79 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~---~~~v~~~~~~~~a~   79 (300)
                      ++.++|.||||+|++|.+++..|++.|.       +|+++|+++  +.++....++.......   ..++.-..+..+++
T Consensus         9 ~~~~~vlVtGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   79 (255)
T 1fmc_A            9 LDGKCAIITGAGAGIGKEIAITFATAGA-------SVVVSDINA--DAANHVVDEIQQLGGQAFACRCDITSEQELSALA   79 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHH
Confidence            4557899999999999999999998874       789999863  34433322332211000   00000001122233


Q ss_pred             -------CCCcEEEEeCCCCCCC--CCc---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEecCchhhHHHHHHH
Q 022227           80 -------TGVNIAVMVGGFPRKE--GME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        80 -------~~aDvVi~~ag~~~~~--g~~---r~dl~~~N~~i~~~i~~~i~----~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                             .+.|+||++||.....  ..+   ..+.+..|+.....+.+.+.    +..  ..++|++|+....       
T Consensus        80 ~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~-------  150 (255)
T 1fmc_A           80 DFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG--GGVILTITSMAAE-------  150 (255)
T ss_dssp             HHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT-------
T ss_pred             HHHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhc-------
Confidence                   3899999999875321  122   23456778777666655553    433  2467777754321       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                        .+.|....++.++.-...+.+.+++++.
T Consensus       151 --~~~~~~~~Y~~sK~a~~~~~~~~~~~~~  178 (255)
T 1fmc_A          151 --NKNINMTSYASSKAAASHLVRNMAFDLG  178 (255)
T ss_dssp             --CCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence              1223233456666666667777777663

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.44  E-value=7.5e-07  Score=85.72  Aligned_cols=152  Identities=18%  Similarity=0.232  Sum_probs=88.8

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh---cc-----------CCc
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA---AF-----------PLL   66 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~---~~-----------~~~   66 (300)
                      |+|+.+||+||| +|.+|+.++..|+..|+       +|+++|+++  ++++.....+...   ..           ...
T Consensus         1 Msm~~~kVgVIG-aG~MG~~IA~~la~aG~-------~V~l~D~~~--e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~   70 (483)
T 3mog_A            1 MSLNVQTVAVIG-SGTMGAGIAEVAASHGH-------QVLLYDISA--EALTRAIDGIHARLNSRVTRGKLTAETCERTL   70 (483)
T ss_dssp             ---CCCCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSCH--HHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHH
T ss_pred             CCCCCCEEEEEC-cCHHHHHHHHHHHHCCC-------eEEEEECCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            666677999999 79999999999998875       699999964  4443221111110   00           012


Q ss_pred             ccEEEeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        67 ~~v~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                      .+++.+++. +++++||+||.+.-              .+..+.+++.+.+.+.+++++  |++||.+.+-...+.+..+
T Consensus        71 ~~i~~~~~~-~~~~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~~--IlasntSti~i~~ia~~~~  133 (483)
T 3mog_A           71 KRLIPVTDI-HALAAADLVIEAAS--------------ERLEVKKALFAQLAEVCPPQT--LLTTNTSSISITAIAAEIK  133 (483)
T ss_dssp             HTEEEECCG-GGGGGCSEEEECCC--------------CCHHHHHHHHHHHHHHSCTTC--EEEECCSSSCHHHHTTTSS
T ss_pred             hceeEeCCH-HHhcCCCEEEEcCC--------------CcHHHHHHHHHHHHHhhccCc--EEEecCCCCCHHHHHHHcc
Confidence            356777776 57999999999841              234555677777888887775  3445544322121122111


Q ss_pred             C---------C-CCC--c---EEee--ehhhHHHHHHHHHHHcCCCCCCe
Q 022227          147 S---------I-PAK--N---ITCL--TRLDHNRALGQISEKLNVQVSDV  179 (300)
Q Consensus       147 ~---------~-p~~--~---i~~~--t~ld~~R~~~~la~~l~v~~~~V  179 (300)
                      .         + |..  +   +..+  |.-+.......+++.+|..+..+
T Consensus       134 ~p~~~ig~hf~~Pa~v~~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v  183 (483)
T 3mog_A          134 NPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRC  183 (483)
T ss_dssp             SGGGEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CccceEEeeecChhhhCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEE
Confidence            0         1 222  1   2222  35555555667788888665444

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=98.44  E-value=4.2e-07  Score=81.20  Aligned_cols=154  Identities=12%  Similarity=0.064  Sum_probs=85.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcc-cCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-CcccEEEeCChhhhcCCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGV-MLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEACTGV   82 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~-~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-~~~~v~~~~~~~~a~~~a   82 (300)
                      +++|+||||+|++|++++..|+..| .       +|+++++++..  ...  .++...... ...++.-..+..++++++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-------~V~~~~R~~~~--~~~--~~l~~~~~~~~~~D~~d~~~l~~~~~~~   73 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF-------KVRVVTRNPRK--KAA--KELRLQGAEVVQGDQDDQVIMELALNGA   73 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS-------EEEEEESCTTS--HHH--HHHHHTTCEEEECCTTCHHHHHHHHTTC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc-------eEEEEEcCCCC--HHH--HHHHHCCCEEEEecCCCHHHHHHHHhcC
Confidence            4789999999999999999999865 3       78888876422  111  111111000 000110111356788999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehhhHH
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN  162 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~  162 (300)
                      |+||++++.....      ....|+...+++++.+++.+. . ++|. ++.....     ....+.+ ...++.++..  
T Consensus        74 d~vi~~a~~~~~~------~~~~~~~~~~~~~~aa~~~gv-~-~iv~-~S~~~~~-----~~~~~~~-~~~y~~sK~~--  136 (299)
T 2wm3_A           74 YATFIVTNYWESC------SQEQEVKQGKLLADLARRLGL-H-YVVY-SGLENIK-----KLTAGRL-AAAHFDGKGE--  136 (299)
T ss_dssp             SEEEECCCHHHHT------CHHHHHHHHHHHHHHHHHHTC-S-EEEE-CCCCCHH-----HHTTTSC-CCHHHHHHHH--
T ss_pred             CEEEEeCCCCccc------cchHHHHHHHHHHHHHHHcCC-C-EEEE-EcCcccc-----ccCCCcc-cCchhhHHHH--
Confidence            9999998753211      134567788899999888753 2 4555 4333221     1111111 1111222222  


Q ss_pred             HHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          163 RALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       163 R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                        ...+.+..|++..-++.-.++|+.
T Consensus       137 --~e~~~~~~gi~~~ilrp~~~~~~~  160 (299)
T 2wm3_A          137 --VEEYFRDIGVPMTSVRLPCYFENL  160 (299)
T ss_dssp             --HHHHHHHHTCCEEEEECCEEGGGG
T ss_pred             --HHHHHHHCCCCEEEEeecHHhhhc
Confidence              222334458877777766667754

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.44  E-value=1.4e-06  Score=83.05  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=71.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC----------cccEEEeCCh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL----------LKGVVATTDA   75 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~----------~~~v~~~~~~   75 (300)
                      |||+|+| +|.+|..++..|+..|.       +|+++|+++  ++++...........+.          ..++..+++.
T Consensus         3 mkI~VIG-~G~vG~~lA~~La~~G~-------~V~~~D~~~--~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~   72 (450)
T 3gg2_A            3 LDIAVVG-IGYVGLVSATCFAELGA-------NVRCIDTDR--NKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEI   72 (450)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCH
T ss_pred             CEEEEEC-cCHHHHHHHHHHHhcCC-------EEEEEECCH--HHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCH
Confidence            6999999 79999999999998774       799999964  44432221100000000          2357788898


Q ss_pred             hhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEec
Q 022227           76 VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA  131 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~s  131 (300)
                      .+++++||+||++.+.|..++.      ..+...++++++.+.++.+++..+|..|
T Consensus        73 ~ea~~~aDvViiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~S  122 (450)
T 3gg2_A           73 EQAVPEADIIFIAVGTPAGEDG------SADMSYVLDAARSIGRAMSRYILIVTKS  122 (450)
T ss_dssp             HHHGGGCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             HHHHhcCCEEEEEcCCCcccCC------CcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence            8899999999999876653322      1234455566666666655454444443

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=98.43  E-value=2.2e-06  Score=74.11  Aligned_cols=151  Identities=14%  Similarity=0.071  Sum_probs=85.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC--
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--   80 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~--   80 (300)
                      ++.++|.||||+|++|++++..|++.|.       +|+++|+++  ++++....++.... ....++.-..+..++++  
T Consensus         5 ~~~~~vlVTGasggiG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~   74 (244)
T 1cyd_A            5 FSGLRALVTGAGKGIGRDTVKALHASGA-------KVVAVTRTN--SDLVSLAKECPGIE-PVCVDLGDWDATEKALGGI   74 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHSTTCE-EEECCTTCHHHHHHHHTTC
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhccCCC-cEEecCCCHHHHHHHHHHc
Confidence            4567999999999999999999998875       789998863  33322211111000 00000000112233333  


Q ss_pred             -CCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHHHhhh----cCCCeEEEEecCchhhHHHHHHHHCCCCC
Q 022227           81 -GVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQH----AAPNCKVLVVANPANTNALILKEFAPSIP  149 (300)
Q Consensus        81 -~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~~----~~~~~~viv~sNP~~~~~~~~~~~~~~~p  149 (300)
                       ..|+||++||.....   ..+   -...+..|+.....+.+.+.+.    .. ..++|++|+....         .+.|
T Consensus        75 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~---------~~~~  144 (244)
T 1cyd_A           75 GPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGV-PGSIVNVSSMVAH---------VTFP  144 (244)
T ss_dssp             CCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGT---------SCCT
T ss_pred             CCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC-CeEEEEEcchhhc---------CCCC
Confidence             579999999975321   112   2345677877766666555443    31 2467777764321         1223


Q ss_pred             CCcEEeeehhhHHHHHHHHHHHcC
Q 022227          150 AKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       150 ~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ....++.++.....+.+.++++++
T Consensus       145 ~~~~Y~~sK~a~~~~~~~~a~~~~  168 (244)
T 1cyd_A          145 NLITYSSTKGAMTMLTKAMAMELG  168 (244)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CcchhHHHHHHHHHHHHHHHHHhh
Confidence            223456666666677777777754

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=98.43  E-value=5.3e-07  Score=78.19  Aligned_cols=153  Identities=14%  Similarity=0.139  Sum_probs=79.6

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEE-ecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV   76 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~-D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~   76 (300)
                      |+++.++|.||||+|++|.+++..|++.|.       +++++ +.++  +.++....++......   ...++.-..+..
T Consensus         1 M~l~~~~vlItGasggiG~~~a~~l~~~G~-------~V~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~   71 (247)
T 2hq1_A            1 MQLKGKTAIVTGSSRGLGKAIAWKLGNMGA-------NIVLNGSPAS--TSLDATAEEFKAAGINVVVAKGDVKNPEDVE   71 (247)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEECTTC--SHHHHHHHHHHHTTCCEEEEESCTTSHHHHH
T ss_pred             CCCCCcEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCcCH--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHH
Confidence            777778999999999999999999998875       78888 4432  2333222222211100   000000000112


Q ss_pred             hhc-------CCCcEEEEeCCCCCCC------CCcHHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEecCchhhHHH
Q 022227           77 EAC-------TGVNIAVMVGGFPRKE------GMERKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNAL  139 (300)
Q Consensus        77 ~a~-------~~aDvVi~~ag~~~~~------g~~r~dl~~~N~~i~~~i~~~i~----~~~~~~~~viv~sNP~~~~~~  139 (300)
                      +++       .+.|+||+.||.....      .++-.+.+..|+.....+.+.+.    +..  ..++|++|+.....  
T Consensus        72 ~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~--  147 (247)
T 2hq1_A           72 NMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQK--SGKIINITSIAGII--  147 (247)
T ss_dssp             HHHHHHHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHT--CEEEEEECC-------
T ss_pred             HHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcChhhcc--
Confidence            222       3789999999875321      11224567778777555555444    332  34677777653211  


Q ss_pred             HHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       140 ~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                             +.|....++.++.-...+.+.++++++
T Consensus       148 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~  174 (247)
T 2hq1_A          148 -------GNAGQANYAASKAGLIGFTKSIAKEFA  174 (247)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             -------CCCCCcHhHHHHHHHHHHHHHHHHHHH
Confidence                   112222345555555666677777664

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=98.43  E-value=6.4e-07  Score=78.49  Aligned_cols=160  Identities=14%  Similarity=0.079  Sum_probs=88.1

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      |+++.++|.||||+|++|.+++..|++.|.       +++++|++.  ++++....++.........++.-..+..++++
T Consensus         8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~   78 (265)
T 2o23_A            8 RSVKGLVAVITGGASGLGLATAERLVGQGA-------SAVLLDLPN--SGGEAQAKKLGNNCVFAPADVTSEKDVQTALA   78 (265)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECTT--SSHHHHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCc--HhHHHHHHHhCCceEEEEcCCCCHHHHHHHHH
Confidence            445567899999999999999999998875       789999864  23332222221000000000000011223333


Q ss_pred             -------CCcEEEEeCCCCCCCC---------Cc---HHHHHHhhHHHHHHHHHHHhhhcC--------CCeEEEEecCc
Q 022227           81 -------GVNIAVMVGGFPRKEG---------ME---RKDVMSKNVSIYKAQASALEQHAA--------PNCKVLVVANP  133 (300)
Q Consensus        81 -------~aDvVi~~ag~~~~~g---------~~---r~dl~~~N~~i~~~i~~~i~~~~~--------~~~~viv~sNP  133 (300)
                             ..|++|+.||......         .+   -...+..|+.....+.+.+.+.-.        +..++|++|+.
T Consensus        79 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~  158 (265)
T 2o23_A           79 LAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASV  158 (265)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCT
T ss_pred             HHHHHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCCh
Confidence                   8999999998753211         12   234566777766666666554411        13467777654


Q ss_pred             hhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          134 ANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      ...       .  +.|....|+.++.-...+.+.+++++.  +..|+
T Consensus       159 ~~~-------~--~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~  194 (265)
T 2o23_A          159 AAF-------E--GQVGQAAYSASKGGIVGMTLPIARDLA--PIGIR  194 (265)
T ss_dssp             HHH-------H--CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             hhc-------C--CCCCCchhHHHHHHHHHHHHHHHHHHh--hcCcE
Confidence            321       1  123222355555555566666776653  33454

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=98.43  E-value=1.5e-07  Score=82.66  Aligned_cols=104  Identities=15%  Similarity=0.244  Sum_probs=71.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC--Cc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG--VN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~--aD   83 (300)
                      |||.||||+|++|++++..|++ +.       +|+++++++..+  .+...|+.+..           +..+++++  +|
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~-------~V~~~~r~~~~~--~~~~~Dl~~~~-----------~~~~~~~~~~~d   59 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RH-------EVIKVYNSSEIQ--GGYKLDLTDFP-----------RLEDFIIKKRPD   59 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TS-------CEEEEESSSCCT--TCEECCTTSHH-----------HHHHHHHHHCCS
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CC-------eEEEecCCCcCC--CCceeccCCHH-----------HHHHHHHhcCCC
Confidence            4799999999999999999984 43       688888764211  11223333322           33455655  99


Q ss_pred             EEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCc
Q 022227           84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        84 vVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                      +||++||.....  ..+..+.+..|+.....+++.+.+.+   +++|++|..
T Consensus        60 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~iv~~SS~  108 (273)
T 2ggs_A           60 VIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVID---SYIVHISTD  108 (273)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT---CEEEEEEEG
T ss_pred             EEEECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhC---CeEEEEecc
Confidence            999999875321  12345677889999999999998753   467777654

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=98.43  E-value=2.7e-07  Score=81.68  Aligned_cols=104  Identities=14%  Similarity=0.148  Sum_probs=66.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhc--ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-CcccEEEeCChhhhcCCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARG--VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEACTGV   82 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~--~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-~~~~v~~~~~~~~a~~~a   82 (300)
                      +||+||||+|++|++++..|+..  |.       +|+.+++++  +++..    +...... ...++.-..+..++++++
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~-------~V~~~~r~~--~~~~~----l~~~~~~~~~~D~~d~~~l~~~~~~~   67 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS-------QIIAIVRNV--EKAST----LADQGVEVRHGDYNQPESLQKAFAGV   67 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG-------GEEEEESCT--TTTHH----HHHTTCEEEECCTTCHHHHHHHTTTC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC-------eEEEEEcCH--HHHhH----HhhcCCeEEEeccCCHHHHHHHHhcC
Confidence            47999999999999999999876  54       688888754  22221    1110000 000110111356778999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      |+||++|+...    ..    ..|+...+++++++++.+. . ++|.+|.
T Consensus        68 d~vi~~a~~~~----~~----~~n~~~~~~l~~a~~~~~~-~-~~v~~Ss  107 (287)
T 2jl1_A           68 SKLLFISGPHY----DN----TLLIVQHANVVKAARDAGV-K-HIAYTGY  107 (287)
T ss_dssp             SEEEECCCCCS----CH----HHHHHHHHHHHHHHHHTTC-S-EEEEEEE
T ss_pred             CEEEEcCCCCc----Cc----hHHHHHHHHHHHHHHHcCC-C-EEEEECC
Confidence            99999998531    11    4588889999999988653 2 5666664

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=98.42  E-value=2.6e-07  Score=89.24  Aligned_cols=173  Identities=12%  Similarity=0.006  Sum_probs=96.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchh-hhhhhhhhhhhh-----ccCCcccEE-EeCChh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE-ALNGVKMELVDA-----AFPLLKGVV-ATTDAV   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~-~l~g~~~dl~~~-----~~~~~~~v~-~~~~~~   76 (300)
                      ++++|.||||+|++|++++..|...+.       +|+++++.++.. .+......+...     ......++. +..|+.
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~-------~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~  221 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSH-------RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFE  221 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEE-------EEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTT
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCC-------EEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCc
Confidence            357999999999999999999965553       788888765311 111111111110     000001111 111111


Q ss_pred             h-----hcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH---------HH
Q 022227           77 E-----ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI---------LK  142 (300)
Q Consensus        77 ~-----a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~---------~~  142 (300)
                      +     ++.++|+||++|+... ...+..++...|+...+++++.+.+ .  ..+++.+|.-..  ...         +.
T Consensus       222 d~~~l~~~~~~D~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~-~--~~~~v~iSS~~v--G~~~~~~~~~~~~~  295 (508)
T 4f6l_B          222 CMDDVVLPENMDTIIHAGARTD-HFGDDDEFEKVNVQGTVDVIRLAQQ-H--HARLIYVSTISV--GTYFDIDTEDVTFS  295 (508)
T ss_dssp             BCSSCCCSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT-T--TCEEEEEEESCT--TSEECTTCSCCEEC
T ss_pred             ccccCCCccCCCEEEECCceec-CCCCHHHHhhhHHHHHHHHHHHHHh-C--CCcEEEeCChhh--ccCCccCCcCcccc
Confidence            1     5679999999998753 2223455678899999999999988 3  235666654221  000         00


Q ss_pred             HHCC--CCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          143 EFAP--SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       143 ~~~~--~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                      +..+  ...+...++.++...+++....++ .|++..-++.-.|+|....
T Consensus       296 E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~  344 (508)
T 4f6l_B          296 EADVYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNG  344 (508)
T ss_dssp             TTCSCSSBCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSS
T ss_pred             cccccccccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCC
Confidence            0000  001223466677777777666554 6888888887777886543

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=98.42  E-value=8.8e-07  Score=77.42  Aligned_cols=149  Identities=15%  Similarity=0.137  Sum_probs=85.5

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEE-EeCC-----
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVV-ATTD-----   74 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~-~~~~-----   74 (300)
                      |+++.++|.||||+|++|.+++..|++.|.-      .++++|+++..+.++    ++.... + ..++. +..|     
T Consensus         1 m~l~~k~vlVtGas~gIG~~~a~~l~~~G~~------~v~~~~r~~~~~~~~----~l~~~~-~-~~~~~~~~~D~~~~~   68 (254)
T 1sby_A            1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLK------NFVILDRVENPTALA----ELKAIN-P-KVNITFHTYDVTVPV   68 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCS------EEEEEESSCCHHHHH----HHHHHC-T-TSEEEEEECCTTSCH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCc------EEEEEecCchHHHHH----HHHHhC-C-CceEEEEEEecCCCh
Confidence            7777789999999999999999999988740      388888864322222    121110 0 00010 0111     


Q ss_pred             --hhh-------hcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcC-----CCeEEEEecCchhhHHHH
Q 022227           75 --AVE-------ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA-----PNCKVLVVANPANTNALI  140 (300)
Q Consensus        75 --~~~-------a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~-----~~~~viv~sNP~~~~~~~  140 (300)
                        ..+       .+...|++|+.||...  .++-...+..|+.....+.+.+.+.-.     +..++|++|+....    
T Consensus        69 ~~~~~~~~~~~~~~g~id~lv~~Ag~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~----  142 (254)
T 1sby_A           69 AESKKLLKKIFDQLKTVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGF----  142 (254)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT----
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCccCC--HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhc----
Confidence              111       2237899999999752  233455677787776666665543311     12467887765431    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                           .+.|....|+.++.-...+.+.+++++
T Consensus       143 -----~~~~~~~~Y~~sK~a~~~~~~~la~~~  169 (254)
T 1sby_A          143 -----NAIHQVPVYSASKAAVVSFTNSLAKLA  169 (254)
T ss_dssp             -----SCCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----cCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence                 122322234555555555666666653

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=98.42  E-value=5e-07  Score=80.18  Aligned_cols=159  Identities=15%  Similarity=0.246  Sum_probs=89.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEE-EeC------Chh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVV-ATT------DAV   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~-~~~------~~~   76 (300)
                      +.++|+||||+|++|..++..|++.|.       +|+++|+++  ++++....++......  .++. +..      +..
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~   99 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL-------KVVGCARTV--GNIEELAAECKSAGYP--GTLIPYRCDLSNEEDIL   99 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCS--SEEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEECCh--HHHHHHHHHHHhcCCC--ceEEEEEecCCCHHHHH
Confidence            346899999999999999999998875       788998853  3443332233221100  0110 111      111


Q ss_pred             hh-------cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHH
Q 022227           77 EA-------CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNAL  139 (300)
Q Consensus        77 ~a-------~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~  139 (300)
                      ++       +.+.|+||++||.....   ..+.   ...+..|+..    .+.+.+.+++...+..++|++|+.....  
T Consensus       100 ~~~~~~~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~--  177 (279)
T 1xg5_A          100 SMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHR--  177 (279)
T ss_dssp             HHHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTS--
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcc--
Confidence            22       23799999999875322   1122   3456777776    7777788777642124677777643210  


Q ss_pred             HHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       140 ~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                           ....+....++.++.....+.+.+++++...+..|+
T Consensus       178 -----~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~  213 (279)
T 1xg5_A          178 -----VLPLSVTHFYSATKYAVTALTEGLRQELREAQTHIR  213 (279)
T ss_dssp             -----CCSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred             -----cCCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeE
Confidence                 001121123455555555566666766653344555

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=98.42  E-value=1.1e-07  Score=83.38  Aligned_cols=151  Identities=15%  Similarity=0.077  Sum_probs=83.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEE-EeC------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVV-ATT------   73 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~-~~~------   73 (300)
                      +.++|.||||+|++|.+++..|++.|.       +|+++|+++  +.++....++.....   ....++. +..      
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~   76 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGA-------TVAACDLDR--AAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEAR   76 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHTC------------CCEEEECCTTSHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHHHHhcCccccccCcceEEEEecCCCHH
Confidence            457899999999999999999998874       789998863  333322222211100   0000010 111      


Q ss_pred             ChhhhcC-------CC-cEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHHHhhhcC--C-CeEEEEecCchhh
Q 022227           74 DAVEACT-------GV-NIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAA--P-NCKVLVVANPANT  136 (300)
Q Consensus        74 ~~~~a~~-------~a-DvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~~~~--~-~~~viv~sNP~~~  136 (300)
                      +..++++       .. |+||++||.....   ..+   ..+.+..|+.....+.+.+.+...  + ..++|++|+....
T Consensus        77 ~~~~~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~  156 (264)
T 2pd6_A           77 AARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGK  156 (264)
T ss_dssp             HHHHHHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHH
T ss_pred             HHHHHHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhc
Confidence            1222233       33 9999999975421   112   234567787777666666554311  1 2467777764321


Q ss_pred             HHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       137 ~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                             .  +.|....++.++.....+...+++++
T Consensus       157 -------~--~~~~~~~Y~~sK~a~~~~~~~la~e~  183 (264)
T 2pd6_A          157 -------V--GNVGQTNYAASKAGVIGLTQTAAREL  183 (264)
T ss_dssp             -------H--CCTTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------c--CCCCChhhHHHHHHHHHHHHHHHHHh
Confidence                   1  22322345556665556666677664

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=98.42  E-value=1.5e-06  Score=75.97  Aligned_cols=150  Identities=17%  Similarity=0.119  Sum_probs=86.3

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhh--hhhhhhhhhhhccCCcccEEEeCChhhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA--LNGVKMELVDAAFPLLKGVVATTDAVEA   78 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~--l~g~~~dl~~~~~~~~~~v~~~~~~~~a   78 (300)
                      |+++.+++.||||+|.+|.+++..|++.|.       +|+++|+++..+.  ......|+.+....  ..  ......+.
T Consensus         3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~-------~V~~~~r~~~~~~~~~~~~~~D~~d~~~~--~~--~~~~~~~~   71 (250)
T 2fwm_X            3 MDFSGKNVWVTGAGKGIGYATALAFVEAGA-------KVTGFDQAFTQEQYPFATEVMDVADAAQV--AQ--VCQRLLAE   71 (250)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCCCSSCCSSEEEECCTTCHHHH--HH--HHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCchhhhcCCceEEEcCCCCHHHH--HH--HHHHHHHH
Confidence            566667999999999999999999999875       7888888642111  11112233332100  00  00011222


Q ss_pred             cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHHHHCCCC
Q 022227           79 CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEFAPSI  148 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~  148 (300)
                      +...|++|+.||.....   ..+.   ...+..|+.....+.+.+    ++..  ..++|++|+....         .+.
T Consensus        72 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~---------~~~  140 (250)
T 2fwm_X           72 TERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQR--GGAIVTVASDAAH---------TPR  140 (250)
T ss_dssp             CSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGT---------SCC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcC--CCEEEEECchhhC---------CCC
Confidence            34789999999975421   1222   345667776655555544    4443  2467777764431         122


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHc
Q 022227          149 PAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                      |....|+.++.....+.+.++.++
T Consensus       141 ~~~~~Y~~sK~a~~~~~~~la~e~  164 (250)
T 2fwm_X          141 IGMSAYGASKAALKSLALSVGLEL  164 (250)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHh
Confidence            322345556666666777777776

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=98.41  E-value=1.3e-06  Score=76.83  Aligned_cols=149  Identities=16%  Similarity=0.126  Sum_probs=84.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC---
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT---   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~---   80 (300)
                      +.++|.||||+|.+|.+++..|++.|.       +|++.|+++  ++++....++.........++.-..+..++++   
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   76 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGA-------KVVFGDILD--EEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAV   76 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHH
Confidence            457899999999999999999998875       789998863  33332222222111000001100011223333   


Q ss_pred             ----CCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           81 ----GVNIAVMVGGFPRKE---GMER---KDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        81 ----~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                          +.|++|+.||.....   ..+.   ...+..|+...    +.+.+.+++..  ..++|++|+....         .
T Consensus        77 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~---------~  145 (260)
T 1nff_A           77 TAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG--RGSIINISSIEGL---------A  145 (260)
T ss_dssp             HHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------S
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEEeehhhc---------C
Confidence                799999999975421   1222   34566776665    55556665553  3467887764431         1


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                      +.|....|+.++.-...+.+.+++++
T Consensus       146 ~~~~~~~Y~~sK~a~~~~~~~la~e~  171 (260)
T 1nff_A          146 GTVACHGYTATKFAVRGLTKSTALEL  171 (260)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHh
Confidence            22322234555555556666677765

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=98.41  E-value=2e-07  Score=85.25  Aligned_cols=96  Identities=18%  Similarity=0.117  Sum_probs=61.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC--chhhhhhhhhhhhhhccC-CcccEEEeCChhhhcC-
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFP-LLKGVVATTDAVEACT-   80 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~--~~~~l~g~~~dl~~~~~~-~~~~v~~~~~~~~a~~-   80 (300)
                      ++||+|+||+|++|++++..|+..|.       +++++++++  +.+++. ...++...... ...++.-..++.++++ 
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~-------~V~~l~R~~~~~~~~~~-~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~   81 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR-------PTYILARPGPRSPSKAK-IFKALEDKGAIIVYGLINEQEAMEKILKE   81 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC-------CEEEEECSSCCCHHHHH-HHHHHHHTTCEEEECCTTCHHHHHHHHHH
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC-------CEEEEECCCCCChhHHH-HHHHHHhCCcEEEEeecCCHHHHHHHHhh
Confidence            46899999999999999999998763       688888754  112221 11111111100 0011111124567788 


Q ss_pred             -CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhc
Q 022227           81 -GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA  121 (300)
Q Consensus        81 -~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~  121 (300)
                       ++|+||++++..             |+...+++++++++.+
T Consensus        82 ~~~d~Vi~~a~~~-------------n~~~~~~l~~aa~~~g  110 (346)
T 3i6i_A           82 HEIDIVVSTVGGE-------------SILDQIALVKAMKAVG  110 (346)
T ss_dssp             TTCCEEEECCCGG-------------GGGGHHHHHHHHHHHC
T ss_pred             CCCCEEEECCchh-------------hHHHHHHHHHHHHHcC
Confidence             999999998753             6666788899988875

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=98.40  E-value=9.7e-07  Score=76.71  Aligned_cols=160  Identities=8%  Similarity=0.028  Sum_probs=86.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc-c-CCcccEEEeCChhhh--
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-F-PLLKGVVATTDAVEA--   78 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~-~-~~~~~v~~~~~~~~a--   78 (300)
                      ++.++|.||||+|++|.+++..|++.|.       +|+++|+++  +.++....++.... . ....++.-..+..++  
T Consensus         4 ~~~k~vlVtGasggiG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   74 (251)
T 1zk4_A            4 LDGKVAIITGGTLGIGLAIATKFVEEGA-------KVMITGRHS--DVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFD   74 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHH
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhhccCceEEEECCCCCHHHHHHHHH
Confidence            4567899999999999999999998875       789998863  33332222221100 0 000000000011222  


Q ss_pred             -----cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           79 -----CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        79 -----~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                           +...|+||+.||.....   ..+.   ...+..|+..    .+.+.+.+++... ..++|++|+....       
T Consensus        75 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~-------  146 (251)
T 1zk4_A           75 ATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGL-GASIINMSSIEGF-------  146 (251)
T ss_dssp             HHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSS-CEEEEEECCGGGT-------
T ss_pred             HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC-CCEEEEeCCchhc-------
Confidence                 23589999999875321   1222   3456777764    4445555554432 1467777765431       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEE
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN  181 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~  181 (300)
                        .+.|....++.++.....+.+.++.++...+..|+.
T Consensus       147 --~~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v  182 (251)
T 1zk4_A          147 --VGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRV  182 (251)
T ss_dssp             --SCCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             --cCCCCCccchHHHHHHHHHHHHHHHHhcccCCCeEE
Confidence              122322234555555555666666665433455653

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=98.40  E-value=3.5e-06  Score=72.90  Aligned_cols=151  Identities=14%  Similarity=0.118  Sum_probs=86.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc---
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC---   79 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~---   79 (300)
                      .+.++|.||||+|++|.+++..|+..|.       +|+++|+++  ++++....++.... ....++.-..+..+++   
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~   74 (244)
T 3d3w_A            5 LAGRRVLVTGAGKGIGRGTVQALHATGA-------RVVAVSRTQ--ADLDSLVRECPGIE-PVCVDLGDWEATERALGSV   74 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHSTTCE-EEECCTTCHHHHHHHHTTC
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHcCCCC-EEEEeCCCHHHHHHHHHHc
Confidence            3557899999999999999999998875       788998853  33332211111100 0000000001122333   


Q ss_pred             CCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHHHHHHHHHHhh----hcCCCeEEEEecCchhhHHHHHHHHCCCCC
Q 022227           80 TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQ----HAAPNCKVLVVANPANTNALILKEFAPSIP  149 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~----~~~~~~~viv~sNP~~~~~~~~~~~~~~~p  149 (300)
                      ...|+||+.||......   .+   -...+..|+.....+.+.+.+    ... ..++|++|+....         .+.|
T Consensus        75 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~---------~~~~  144 (244)
T 3d3w_A           75 GPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGV-PGAIVNVSSQCSQ---------RAVT  144 (244)
T ss_dssp             CCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGT---------SCCT
T ss_pred             CCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CcEEEEeCchhhc---------cCCC
Confidence            35899999998754211   11   234567787776555555444    331 2467777765431         1223


Q ss_pred             CCcEEeeehhhHHHHHHHHHHHcC
Q 022227          150 AKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       150 ~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ....|+.++.-...+.+.++++++
T Consensus       145 ~~~~Y~~sK~a~~~~~~~la~e~~  168 (244)
T 3d3w_A          145 NHSVYCSTKGALDMLTKVMALELG  168 (244)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhc
Confidence            333466666666777777777764

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=98.39  E-value=2.4e-06  Score=74.81  Aligned_cols=154  Identities=13%  Similarity=0.129  Sum_probs=88.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhhc
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC   79 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a~   79 (300)
                      ++.+++.||||+|.+|.+++..|++.|.       +|++.|+++. +.   ...++......   ...++.-..+..+++
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~-------~V~~~~r~~~-~~---~~~~l~~~~~~~~~~~~D~~~~~~v~~~~   70 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGA-------NIVLNGFGDP-AP---ALAEIARHGVKAVHHPADLSDVAQIEALF   70 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEECSSCC-HH---HHHHHHTTSCCEEEECCCTTSHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCch-HH---HHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence            3456899999999999999999998875       7889988643 11   11122111000   000100001122333


Q ss_pred             C-------CCcEEEEeCCCCCCC---CCc---HHHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           80 T-------GVNIAVMVGGFPRKE---GME---RKDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        80 ~-------~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                      +       +.|++|+.||.....   ..+   -...+..|+.    .++.+.+.+++..  ..++|++|+....      
T Consensus        71 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~------  142 (255)
T 2q2v_A           71 ALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN--WGRIINIASVHGL------  142 (255)
T ss_dssp             HHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGT------
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEcCchhc------
Confidence            3       799999999975321   112   2345667776    5666666666653  2467877764431      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                         .+.|....++.++.....+.+.+++++.  +..|+
T Consensus       143 ---~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~  175 (255)
T 2q2v_A          143 ---VGSTGKAAYVAAKHGVVGLTKVVGLETA--TSNVT  175 (255)
T ss_dssp             ---SCCTTBHHHHHHHHHHHHHHHHHHHHTT--TSSEE
T ss_pred             ---cCCCCchhHHHHHHHHHHHHHHHHHHhc--ccCcE
Confidence               1223222455566666677777888765  34555

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=98.39  E-value=4e-07  Score=79.88  Aligned_cols=154  Identities=17%  Similarity=0.038  Sum_probs=83.5

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhh----
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE----   77 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~----   77 (300)
                      +.+.+++.||||+|.||.+++..|++.|.       ++++.|+++  +.++....++.........++.-..+..+    
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   74 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGA-------TVLGLDLKP--PAGEEPAAELGAAVRFRNADVTNEADATAALAF   74 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESSC--C------------CEEEECCTTCHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHHhCCceEEEEccCCCHHHHHHHHHH
Confidence            34567899999999999999999999875       788999864  23322221121000000000000011122    


Q ss_pred             ---hcCCCcEEEEeCCCCCCCC-------Cc---HHHHHHhhHHHHHHHHHHHhhhcC--------CCeEEEEecCchhh
Q 022227           78 ---ACTGVNIAVMVGGFPRKEG-------ME---RKDVMSKNVSIYKAQASALEQHAA--------PNCKVLVVANPANT  136 (300)
Q Consensus        78 ---a~~~aDvVi~~ag~~~~~g-------~~---r~dl~~~N~~i~~~i~~~i~~~~~--------~~~~viv~sNP~~~  136 (300)
                         .+...|++|+.||......       .+   -...+..|+.....+.+.+.++-.        +..++|++|+....
T Consensus        75 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~  154 (257)
T 3tpc_A           75 AKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAF  154 (257)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH
T ss_pred             HHHHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhc
Confidence               2338999999999753211       12   234567777666666655544311        23567777765431


Q ss_pred             HHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       137 ~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                             .  +.|....|+.++.-...+.+.+|+++.
T Consensus       155 -------~--~~~~~~~Y~asKaa~~~~~~~la~e~~  182 (257)
T 3tpc_A          155 -------D--GQIGQAAYAASKGGVAALTLPAARELA  182 (257)
T ss_dssp             -------H--CCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             -------c--CCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence                   1  223223455666555667777777754

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=98.38  E-value=8.5e-07  Score=77.02  Aligned_cols=155  Identities=15%  Similarity=0.059  Sum_probs=90.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh----hhhhhhhhccCCcccEEEeCChhhhc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG----VKMELVDAAFPLLKGVVATTDAVEAC   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g----~~~dl~~~~~~~~~~v~~~~~~~~a~   79 (300)
                      +.++|.||||+|.||.+++..|++.|.       +|+++|+++.  ++.+    ...|+.+....  ...  -....+.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~~~D~~~~~~v--~~~--~~~~~~~~   72 (241)
T 1dhr_A            6 EARRVLVYGGRGALGSRCVQAFRARNW-------WVASIDVVEN--EEASASVIVKMTDSFTEQA--DQV--TAEVGKLL   72 (241)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEESSCC--TTSSEEEECCCCSCHHHHH--HHH--HHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCC-------EEEEEeCChh--hccCCcEEEEcCCCCHHHH--HHH--HHHHHHHh
Confidence            456899999999999999999998875       7899998642  2221    12233322100  000  00111223


Q ss_pred             --CCCcEEEEeCCCCCC----CCCc---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCC
Q 022227           80 --TGVNIAVMVGGFPRK----EGME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPA  150 (300)
Q Consensus        80 --~~aDvVi~~ag~~~~----~g~~---r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~  150 (300)
                        ...|++|+.||....    ...+   -...+..|+.....+.+.+.+.-.+..++|++|+....         .+.|.
T Consensus        73 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~---------~~~~~  143 (241)
T 1dhr_A           73 GDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL---------DGTPG  143 (241)
T ss_dssp             TTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG---------SCCTT
T ss_pred             CCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHc---------cCCCC
Confidence              478999999997532    1112   23456778887777777776543223467777764431         12232


Q ss_pred             CcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          151 KNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       151 ~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      ...++.++.-...+.+.++++++..+..|+
T Consensus       144 ~~~Y~asK~a~~~~~~~la~e~~~~~~gi~  173 (241)
T 1dhr_A          144 MIGYGMAKGAVHQLCQSLAGKNSGMPSGAA  173 (241)
T ss_dssp             BHHHHHHHHHHHHHHHHHTSTTSSCCTTCE
T ss_pred             chHHHHHHHHHHHHHHHHHHHhccCCCCeE
Confidence            224555555556667777776653355565

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.38  E-value=2.7e-06  Score=74.52  Aligned_cols=156  Identities=15%  Similarity=0.114  Sum_probs=87.3

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChh-----
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAV-----   76 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~-----   76 (300)
                      +++.+++.||||+|++|.+++..|++.|.       +|++.|+++.  + +....++.. . ....++.-..+..     
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~--~-~~~~~~~~~-~-~~~~D~~~~~~~~~~~~~   70 (256)
T 2d1y_A            3 LFAGKGVLVTGGARGIGRAIAQAFAREGA-------LVALCDLRPE--G-KEVAEAIGG-A-FFQVDLEDERERVRFVEE   70 (256)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSTT--H-HHHHHHHTC-E-EEECCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCChh--H-HHHHHHhhC-C-EEEeeCCCHHHHHHHHHH
Confidence            34567899999999999999999999875       7899998642  2 211111210 0 0000000000111     


Q ss_pred             --hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCchhhHHHHHHHHCC
Q 022227           77 --EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        77 --~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                        +.+...|++|+.||.....   ..+.   ...+..|+.....+.+.+.++-  .+..++|++|+-...         .
T Consensus        71 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~---------~  141 (256)
T 2d1y_A           71 AAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGL---------F  141 (256)
T ss_dssp             HHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGT---------S
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcccccc---------C
Confidence              2234789999999975321   1222   3456778776666665544321  113467777764421         1


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      +.|....|+.++.....+.+.++.+++  +..|+
T Consensus       142 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~  173 (256)
T 2d1y_A          142 AEQENAAYNASKGGLVNLTRSLALDLA--PLRIR  173 (256)
T ss_dssp             BCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHh--hcCeE
Confidence            223222455566666667777777764  33454

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=98.38  E-value=2e-06  Score=75.92  Aligned_cols=152  Identities=11%  Similarity=0.070  Sum_probs=88.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch-hhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-EALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~-~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      +.++|.||||+|.||..++..|++.|.       +|+++|+++.. .++.....|+.+....  ...  .....+.+...
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~~~~~~~~~~~Dl~~~~~v--~~~--~~~~~~~~g~i   75 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGS-------KVIDLSIHDPGEAKYDHIECDVTNPDQV--KAS--IDHIFKEYGSI   75 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESSCCCSCSSEEEECCTTCHHHH--HHH--HHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEecCcccCCceEEEEecCCCHHHH--HHH--HHHHHHHcCCC
Confidence            456899999999999999999999875       78888886421 1122223444432200  000  00112234479


Q ss_pred             cEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEecCchhhHHHHHHHHCCCCCCCcEE
Q 022227           83 NIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILKEFAPSIPAKNIT  154 (300)
Q Consensus        83 DvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~~~~--~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~  154 (300)
                      |++|+.||.....   ..+   -...+..|+.....+.+.+.++-.  +..++|++|+....         .+.|....|
T Consensus        76 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~---------~~~~~~~~Y  146 (264)
T 2dtx_A           76 SVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQAS---------IITKNASAY  146 (264)
T ss_dssp             CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGT---------SCCTTBHHH
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhc---------cCCCCchhH
Confidence            9999999975321   122   234567787775555555443311  12467887764421         123333345


Q ss_pred             eeehhhHHHHHHHHHHHcCCC
Q 022227          155 CLTRLDHNRALGQISEKLNVQ  175 (300)
Q Consensus       155 ~~t~ld~~R~~~~la~~l~v~  175 (300)
                      +.++.-...+.+.++.+++-.
T Consensus       147 ~~sK~a~~~~~~~la~e~~~~  167 (264)
T 2dtx_A          147 VTSKHAVIGLTKSIALDYAPL  167 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHhcCC
Confidence            666666667777888887643

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=98.38  E-value=7.1e-07  Score=78.53  Aligned_cols=157  Identities=13%  Similarity=0.087  Sum_probs=90.8

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE   77 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~   77 (300)
                      |+++.++|.||||+|++|.+++..|++.|.       ++++++... .+.++....++......   ...++.-..+..+
T Consensus        17 ~~~~~k~vlItGasggiG~~la~~l~~~G~-------~v~~~~r~~-~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~   88 (274)
T 1ja9_A           17 KPLAGKVALTTGAGRGIGRGIAIELGRRGA-------SVVVNYGSS-SKAAEEVVAELKKLGAQGVAIQADISKPSEVVA   88 (274)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHH
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCc-hHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHH
Confidence            344557899999999999999999998874       788888732 23333222233221100   0001000011222


Q ss_pred             hcC-------CCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           78 ACT-------GVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        78 a~~-------~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                      +++       +.|+||+.||.....   ..+   -.+.+..|+.....+.+.+.+...++.++|++|+....        
T Consensus        89 ~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~--------  160 (274)
T 1ja9_A           89 LFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAV--------  160 (274)
T ss_dssp             HHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGT--------
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhc--------
Confidence            333       789999999875421   112   23467788888888888777653222467777754331        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ..+.|....++.++.-...+.+.++++++
T Consensus       161 ~~~~~~~~~Y~~sK~a~~~~~~~~~~e~~  189 (274)
T 1ja9_A          161 MTGIPNHALYAGSKAAVEGFCRAFAVDCG  189 (274)
T ss_dssp             CCSCCSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             cCCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            01223223456666666677777777764

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.37  E-value=1.8e-06  Score=83.01  Aligned_cols=123  Identities=17%  Similarity=0.222  Sum_probs=74.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhh--------hhhhcc-CCcccEEEeCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME--------LVDAAF-PLLKGVVATTD   74 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~d--------l~~~~~-~~~~~v~~~~~   74 (300)
                      ++|||+|+| +|.||..++..|+..+. +    .+|+++|+++  ++++.....        +.+... ....++..+++
T Consensus         8 ~~mkI~VIG-~G~vG~~~A~~La~~g~-g----~~V~~~D~~~--~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~   79 (481)
T 2o3j_A            8 KVSKVVCVG-AGYVGGPTCAMIAHKCP-H----ITVTVVDMNT--AKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSD   79 (481)
T ss_dssp             CCCEEEEEC-CSTTHHHHHHHHHHHCT-T----SEEEEECSCH--HHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhcCC-C----CEEEEEECCH--HHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECC
Confidence            357999999 79999999999988631 1    1799999863  444332110        100000 00124677888


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEe-cCchh
Q 022227           75 AVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVV-ANPAN  135 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~-sNP~~  135 (300)
                      ..+++++||+||++.+.|.+.+.++.+ -..++..+.+.++.+.++.+++..+|.. |+|..
T Consensus        80 ~~~~~~~aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g  140 (481)
T 2o3j_A           80 IPKAIAEADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVK  140 (481)
T ss_dssp             HHHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTT
T ss_pred             HHHHhhcCCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCC
Confidence            878899999999998776543222111 1122344556666676666555434432 56654

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.37  E-value=2.7e-06  Score=81.63  Aligned_cols=81  Identities=14%  Similarity=0.082  Sum_probs=56.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC----------------c
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL----------------L   66 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~-~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~----------------~   66 (300)
                      +.|||+|+| +|.+|..++..|+.. |..      +|+++|+++  ++..+....+.....+.                .
T Consensus        17 ~~mkIaVIG-lG~mG~~lA~~la~~~G~~------~V~~~D~~~--~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~   87 (478)
T 3g79_A           17 PIKKIGVLG-MGYVGIPAAVLFADAPCFE------KVLGFQRNS--KSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKA   87 (478)
T ss_dssp             SCCEEEEEC-CSTTHHHHHHHHHHSTTCC------EEEEECCCC--TTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHT
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHhCCCC------eEEEEECCh--hHhHHHHHHHHhcCCCccccCCCHHHHHHhhccc
Confidence            457999999 799999999999987 631      699999975  31111222222211011                2


Q ss_pred             ccEEEeCChhhhcCCCcEEEEeCCCCCC
Q 022227           67 KGVVATTDAVEACTGVNIAVMVGGFPRK   94 (300)
Q Consensus        67 ~~v~~~~~~~~a~~~aDvVi~~ag~~~~   94 (300)
                      .++..+++ .+++++||+||++.+.|..
T Consensus        88 g~l~~ttd-~ea~~~aDvViiaVptp~~  114 (478)
T 3g79_A           88 GKFECTPD-FSRISELDAVTLAIQTPFA  114 (478)
T ss_dssp             TCEEEESC-GGGGGGCSEEEECCCCCCC
T ss_pred             CCeEEeCc-HHHHhcCCEEEEecCCchh
Confidence            45778888 7899999999999876653

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=98.37  E-value=9.4e-07  Score=77.49  Aligned_cols=160  Identities=20%  Similarity=0.210  Sum_probs=89.2

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhh---
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE---   77 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~---   77 (300)
                      |+.+.+++.||||+|.+|.+++..|++.|.       +|+++|+++  ++++....++.........++.-..+..+   
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   75 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGA-------KVVIVDRDK--AGAERVAGEIGDAALAVAADISKEADVDAAVE   75 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCTTEEEEECCTTSHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHhCCceEEEEecCCCHHHHHHHHH
Confidence            555668999999999999999999999875       799999863  44443332221111000001000011122   


Q ss_pred             ----hcCCCcEEEEeCCCCCCCC----CcH---HHHHHhhHHH----HHHHHHHHhhhcC--CCeEEEEecCchhhHHHH
Q 022227           78 ----ACTGVNIAVMVGGFPRKEG----MER---KDVMSKNVSI----YKAQASALEQHAA--PNCKVLVVANPANTNALI  140 (300)
Q Consensus        78 ----a~~~aDvVi~~ag~~~~~g----~~r---~dl~~~N~~i----~~~i~~~i~~~~~--~~~~viv~sNP~~~~~~~  140 (300)
                          .+...|++|+.||....++    .+.   ...+..|+..    ++.+.+.+.+...  +..++|++|.....    
T Consensus        76 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~----  151 (261)
T 3n74_A           76 AALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAG----  151 (261)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTT----
T ss_pred             HHHHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhc----
Confidence                2337899999999754221    122   2345566555    4444455544321  13457777764421    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                           .+.|....|+.++.-...+.+.+++++.  +..|+
T Consensus       152 -----~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~  184 (261)
T 3n74_A          152 -----RPRPNLAWYNATKGWVVSVTKALAIELA--PAKIR  184 (261)
T ss_dssp             -----SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             -----CCCCCccHHHHHHHHHHHHHHHHHHHhh--hcCcE
Confidence                 1223222456666666677777777764  33454

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=98.37  E-value=1.5e-06  Score=76.40  Aligned_cols=150  Identities=13%  Similarity=0.106  Sum_probs=82.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC---
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT---   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~---   80 (300)
                      +.+++.||||+|++|.+++..|++.|.       +|++.|+++  ++++....++.........++.-..+..++++   
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~   81 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGA-------TVAIADLDV--MAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAI   81 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHH
Confidence            457899999999999999999998875       789999863  33332222221100000000000011222333   


Q ss_pred             ----CCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           81 ----GVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        81 ----~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~----~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                          +.|++|+.||.....   ..+   -...+..|+.....+.+.+.    +... ..++|++|+....         .
T Consensus        82 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~---------~  151 (263)
T 3ak4_A           82 DALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNT-KGVIVNTASLAAK---------V  151 (263)
T ss_dssp             HHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-CCEEEEECCGGGT---------S
T ss_pred             HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CeEEEEecccccc---------c
Confidence                799999999975321   112   23456677665555554443    3321 2467777754321         1


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                      +.|....|+.++.....+.+.+++++
T Consensus       152 ~~~~~~~Y~~sK~a~~~~~~~la~e~  177 (263)
T 3ak4_A          152 GAPLLAHYSASKFAVFGWTQALAREM  177 (263)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            22322245555555566667777766

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=98.36  E-value=1.6e-06  Score=77.11  Aligned_cols=158  Identities=17%  Similarity=0.182  Sum_probs=89.1

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChh----
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAV----   76 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~----   76 (300)
                      |+.+.+++.||||+|.||.+++..|++.|.       +|++.|+++  +.++....++.........++.-..+..    
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~   93 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGA-------YVVVADVNE--DAAVRVANEIGSKAFGVRVDVSSAKDAESMVE   93 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCceEEEEecCCCHHHHHHHHH
Confidence            344567899999999999999999999875       789999863  4443222222110000000100000111    


Q ss_pred             ---hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           77 ---EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        77 ---~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                         +.+...|++|+.||.....   ..+.   ...+..|+.....+.+.+    ++..  ..++|++|+....       
T Consensus        94 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~-------  164 (277)
T 4dqx_A           94 KTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNG--GGSIINTTSYTAT-------  164 (277)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTT--CEEEEEECCGGGT-------
T ss_pred             HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhC-------
Confidence               2234789999999975321   1222   335667776655555544    4332  3477887764431       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                        .+.|....|+.++.-...+.+.+|.+++  +..|+
T Consensus       165 --~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~  197 (277)
T 4dqx_A          165 --SAIADRTAYVASKGAISSLTRAMAMDHA--KEGIR  197 (277)
T ss_dssp             --SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             --cCCCCChhHHHHHHHHHHHHHHHHHHhh--hcCeE
Confidence              1233233456666666677777777764  33454

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=98.36  E-value=1.1e-06  Score=77.57  Aligned_cols=152  Identities=15%  Similarity=0.046  Sum_probs=83.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh--ccCCcccEEEeCChhhhc-
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA--AFPLLKGVVATTDAVEAC-   79 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~--~~~~~~~v~~~~~~~~a~-   79 (300)
                      ++.++|+||||+|++|.+++..|+..|.       +|+++|.+.  +.++....++...  ......++.-..+..+++ 
T Consensus        14 l~~k~vlITGasggiG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   84 (278)
T 2bgk_A           14 LQDKVAIITGGAGGIGETTAKLFVRYGA-------KVVIADIAD--DHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVD   84 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHH
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEcCCh--hHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHH
Confidence            3457899999999999999999998875       788998753  3332222222110  000000000001122222 


Q ss_pred             ------CCCcEEEEeCCCCCC-----CCCc---HHHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEecCchhhHHHHHHH
Q 022227           80 ------TGVNIAVMVGGFPRK-----EGME---RKDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        80 ------~~aDvVi~~ag~~~~-----~g~~---r~dl~~~N~~i~~~i~~~i~~~~~--~~~~viv~sNP~~~~~~~~~~  143 (300)
                            .+.|+||+.||....     ...+   -.+.+..|+.....+.+.+.+.-.  +..++|++|+....       
T Consensus        85 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~-------  157 (278)
T 2bgk_A           85 TTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSF-------  157 (278)
T ss_dssp             HHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGT-------
T ss_pred             HHHHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeecccc-------
Confidence                  378999999987531     1112   234567787776666665554310  13467777764421       


Q ss_pred             HCCCCC-CCcEEeeehhhHHHHHHHHHHHc
Q 022227          144 FAPSIP-AKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       144 ~~~~~p-~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                        .+.| ....++.++.-...+.+.+++++
T Consensus       158 --~~~~~~~~~Y~~sK~a~~~~~~~la~e~  185 (278)
T 2bgk_A          158 --TAGEGVSHVYTATKHAVLGLTTSLCTEL  185 (278)
T ss_dssp             --CCCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence              1122 22235556655666666777665

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.36  E-value=2.8e-06  Score=85.66  Aligned_cols=147  Identities=16%  Similarity=0.183  Sum_probs=88.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh--------cc------CCcccEE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA--------AF------PLLKGVV   70 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~--------~~------~~~~~v~   70 (300)
                      .+||+|+| +|.+|+.++..|+..|+       +|+++|+++  ++++.....+.+.        ..      ....+++
T Consensus       312 ~~kV~VIG-aG~MG~~iA~~la~aG~-------~V~l~D~~~--~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~  381 (725)
T 2wtb_A          312 IKKVAIIG-GGLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLK  381 (725)
T ss_dssp             CCCEEEEC-CSHHHHHHHHHHHTTTC-------CEEEECSSH--HHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEE
T ss_pred             CcEEEEEc-CCHhhHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceE
Confidence            46899999 79999999999998875       799999974  4443211111100        00      1234677


Q ss_pred             EeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh-HHHHHHHHCCC--
Q 022227           71 ATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT-NALILKEFAPS--  147 (300)
Q Consensus        71 ~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~-~~~~~~~~~~~--  147 (300)
                      .+++. +++++||+||.+.              ..+..+.+.+.+.+.+++++++  |++||++.. .+.+. +....  
T Consensus       382 ~~~d~-~~~~~aDlVIeaV--------------pe~~~vk~~v~~~l~~~~~~~~--IlasntStl~i~~la-~~~~~p~  443 (725)
T 2wtb_A          382 GSLDY-ESFRDVDMVIEAV--------------IENISLKQQIFADLEKYCPQHC--ILASNTSTIDLNKIG-ERTKSQD  443 (725)
T ss_dssp             EESSS-GGGTTCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTC--EEEECCSSSCHHHHT-TTCSCTT
T ss_pred             EeCCH-HHHCCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc--EEEeCCCCCCHHHHH-HHhcCCC
Confidence            77776 7899999999984              1234555677777888887775  456776542 22222 21110  


Q ss_pred             -------C-CCCc-----EEee--ehhhHHHHHHHHHHHcCCCCCCe
Q 022227          148 -------I-PAKN-----ITCL--TRLDHNRALGQISEKLNVQVSDV  179 (300)
Q Consensus       148 -------~-p~~~-----i~~~--t~ld~~R~~~~la~~l~v~~~~V  179 (300)
                             + |.+.     +..+  |.-++......+.+.+|..|..+
T Consensus       444 ~~iG~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v  490 (725)
T 2wtb_A          444 RIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVV  490 (725)
T ss_dssp             TEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEecCCCCcccCceEEEEECCCCCHHHHHHHHHHHHHhCCEEEEE
Confidence                   0 2221     2222  45566556667778888655433

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=98.35  E-value=2.4e-06  Score=74.97  Aligned_cols=151  Identities=13%  Similarity=0.133  Sum_probs=85.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh----cc-CCcccEEEeCChhh
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA----AF-PLLKGVVATTDAVE   77 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~----~~-~~~~~v~~~~~~~~   77 (300)
                      ++.+++.||||+|.+|.+++..|++.|.       +|++.|+++  ++++....++...    .. ....++.-..+..+
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   75 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARNGA-------RLLLFSRNR--EKLEAAASRIASLVSGAQVDIVAGDIREPGDIDR   75 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHH
Confidence            4567899999999999999999998875       789999863  4443333333211    00 00001100011223


Q ss_pred             hcC------CCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           78 ACT------GVNIAVMVGGFPRKE---GME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        78 a~~------~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                      +++      +.|++|+.||.....   ..+   -...+..|+...    +.+.+.+.+..  ..++|++|+....     
T Consensus        76 ~~~~~~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~-----  148 (260)
T 2z1n_A           76 LFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG--WGRMVYIGSVTLL-----  148 (260)
T ss_dssp             HHHHHHHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT-----
T ss_pred             HHHHHHHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECchhhc-----
Confidence            333      499999999975321   112   234566776665    55555555543  2467777764431     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                          .+.|....++.++.-...+.+.+++++.
T Consensus       149 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~~  176 (260)
T 2z1n_A          149 ----RPWQDLALSNIMRLPVIGVVRTLALELA  176 (260)
T ss_dssp             ----SCCTTBHHHHHHTHHHHHHHHHHHHHHG
T ss_pred             ----CCCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence                1223222355555555666677777763

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=98.35  E-value=7.8e-07  Score=78.80  Aligned_cols=156  Identities=8%  Similarity=0.032  Sum_probs=87.6

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE   77 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~   77 (300)
                      |+++.++|.||||+|++|.+++..|++.|.       +|+++|.++  ++++.....+......   ...++.-..+..+
T Consensus        30 ~~l~~k~vlITGasggIG~~la~~L~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~  100 (279)
T 3ctm_A           30 FSLKGKVASVTGSSGGIGWAVAEAYAQAGA-------DVAIWYNSH--PADEKAEHLQKTYGVHSKAYKCNISDPKSVEE  100 (279)
T ss_dssp             GCCTTCEEEETTTTSSHHHHHHHHHHHHTC-------EEEEEESSS--CCHHHHHHHHHHHCSCEEEEECCTTCHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcceEEEeecCCHHHHHH
Confidence            345567899999999999999999998875       788998864  2222221112111100   0001000011222


Q ss_pred             hc-------CCCcEEEEeCCCCCC--C---CCcH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHH
Q 022227           78 AC-------TGVNIAVMVGGFPRK--E---GMER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNA  138 (300)
Q Consensus        78 a~-------~~aDvVi~~ag~~~~--~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~  138 (300)
                      ++       ...|+||+.||....  +   ..+.   ...+..|+..    .+.+.+.+++...  .++|++|+..... 
T Consensus       101 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--~~iv~isS~~~~~-  177 (279)
T 3ctm_A          101 TISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGK--GSLIITSSISGKI-  177 (279)
T ss_dssp             HHHHHHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEECCCTTSC-
T ss_pred             HHHHHHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CeEEEECchHhcc-
Confidence            22       358999999987542  1   1221   2356667766    6677777776542  3677777644210 


Q ss_pred             HHHHHHCCC-CCCCcEEeeehhhHHHHHHHHHHHcCCC
Q 022227          139 LILKEFAPS-IPAKNITCLTRLDHNRALGQISEKLNVQ  175 (300)
Q Consensus       139 ~~~~~~~~~-~p~~~i~~~t~ld~~R~~~~la~~l~v~  175 (300)
                             +. .+....++.++.-...+.+.++++++-.
T Consensus       178 -------~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~  208 (279)
T 3ctm_A          178 -------VNIPQLQAPYNTAKAACTHLAKSLAIEWAPF  208 (279)
T ss_dssp             -------C---CCHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             -------CCCCCCcccHHHHHHHHHHHHHHHHHHhccc
Confidence                   10 1212235556666667777788887643

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.34  E-value=2.9e-06  Score=81.27  Aligned_cols=104  Identities=16%  Similarity=0.192  Sum_probs=66.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhh--------hhcc-C---CcccEEEe
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELV--------DAAF-P---LLKGVVAT   72 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~--------~~~~-~---~~~~v~~~   72 (300)
                      .+||+|+| +|.+|+.++..|+..|+       +|+++|+++  +.++.....+.        .... .   ......++
T Consensus        37 ~~kV~VIG-aG~MG~~iA~~la~~G~-------~V~l~D~~~--~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~  106 (463)
T 1zcj_A           37 VSSVGVLG-LGTMGRGIAISFARVGI-------SVVAVESDP--KQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFS  106 (463)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECSSH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEE
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEECCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhc
Confidence            46899999 79999999999998775       799999864  33332111111        1000 0   01123346


Q ss_pred             CChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           73 TDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        73 ~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      ++. +++++||+||.+..              .+..+.+++.+.+.++.++++  |++||++.
T Consensus       107 ~~~-~~~~~aDlVIeaVp--------------e~~~~k~~v~~~l~~~~~~~~--ii~snTs~  152 (463)
T 1zcj_A          107 SST-KELSTVDLVVEAVF--------------EDMNLKKKVFAELSALCKPGA--FLCTNTSA  152 (463)
T ss_dssp             SCG-GGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTC--EEEECCSS
T ss_pred             CCH-HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCe--EEEeCCCC
Confidence            665 78999999999852              134555667777777777675  33456654

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=98.34  E-value=1.4e-06  Score=75.11  Aligned_cols=157  Identities=19%  Similarity=0.160  Sum_probs=83.6

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChh----
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAV----   76 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~----   76 (300)
                      |+...++|.||||+|++|++++..|++.|.       +|+++|+++  ++++....++.... ....++.-..+..    
T Consensus         1 M~~~~k~vlVtGasggiG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~   70 (234)
T 2ehd_A            1 MEGMKGAVLITGASRGIGEATARLLHAKGY-------RVGLMARDE--KRLQALAAELEGAL-PLPGDVREEGDWARAVA   70 (234)
T ss_dssp             ---CCCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHSTTCE-EEECCTTCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhhhce-EEEecCCCHHHHHHHHH
Confidence            665567899999999999999999998875       788998853  33332222221100 0000000000111    


Q ss_pred             ---hhcCCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHHHH----HHHHHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           77 ---EACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYK----AQASALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        77 ---~a~~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i~~----~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                         +.+...|++|++||......   .+   -.+.+..|+....    .+.+.+++..  ..++|++|+....       
T Consensus        71 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~-------  141 (234)
T 2ehd_A           71 AMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRG--GGTIVNVGSLAGK-------  141 (234)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT--CEEEEEECCTTTT-------
T ss_pred             HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CcEEEEECCchhc-------
Confidence               22347899999998753211   12   2345667766554    4445555443  3467777754321       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                        .+.|....++.++.....+.+.++.++.  +..|+
T Consensus       142 --~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~  174 (234)
T 2ehd_A          142 --NPFKGGAAYNASKFGLLGLAGAAMLDLR--EANVR  174 (234)
T ss_dssp             --SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             --CCCCCCchhhHHHHHHHHHHHHHHHHHh--hcCcE
Confidence              1222222345555555556666666653  33454

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=98.34  E-value=1.6e-06  Score=74.30  Aligned_cols=142  Identities=11%  Similarity=0.095  Sum_probs=90.8

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      |+.+.+++.||||+|.||.+++..|++.|.       .+++.|+++.        .|+.+....        ....+.+.
T Consensus         2 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-------~V~~~~r~~~--------~D~~~~~~v--------~~~~~~~g   58 (223)
T 3uce_A            2 MGSDKTVYVVLGGTSGIGAELAKQLESEHT-------IVHVASRQTG--------LDISDEKSV--------YHYFETIG   58 (223)
T ss_dssp             ---CCEEEEEETTTSHHHHHHHHHHCSTTE-------EEEEESGGGT--------CCTTCHHHH--------HHHHHHHC
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEecCCcc--------cCCCCHHHH--------HHHHHHhC
Confidence            345667899999999999999999988764       7888887531        455443310        01223346


Q ss_pred             CCcEEEEeCCCCCC--C--CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE
Q 022227           81 GVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI  153 (300)
Q Consensus        81 ~aDvVi~~ag~~~~--~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i  153 (300)
                      ..|++|+.||....  +  ..+.   ...+..|+.....+.+.+.++-.+..++|++|+....         .+.|....
T Consensus        59 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~---------~~~~~~~~  129 (223)
T 3uce_A           59 AFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSR---------KVVANTYV  129 (223)
T ss_dssp             SEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGT---------SCCTTCHH
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhc---------cCCCCchH
Confidence            78999999997521  1  1222   3457789888888888887764334467777754421         12332234


Q ss_pred             EeeehhhHHHHHHHHHHHcCC
Q 022227          154 TCLTRLDHNRALGQISEKLNV  174 (300)
Q Consensus       154 ~~~t~ld~~R~~~~la~~l~v  174 (300)
                      ++.++.-...+.+.++++++-
T Consensus       130 Y~asK~a~~~~~~~la~e~~~  150 (223)
T 3uce_A          130 KAAINAAIEATTKVLAKELAP  150 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhhcC
Confidence            566666666777888888763

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=98.33  E-value=1.3e-06  Score=77.72  Aligned_cols=151  Identities=15%  Similarity=0.107  Sum_probs=86.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChh-------h
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAV-------E   77 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~-------~   77 (300)
                      .+++.||||+|.||.+++..|++.|.       +|++.|++.  ++++....++.........+++-..+..       +
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~   98 (272)
T 4dyv_A           28 KKIAIVTGAGSGVGRAVAVALAGAGY-------GVALAGRRL--DALQETAAEIGDDALCVPTDVTDPDSVRALFTATVE   98 (272)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999875       789999863  4444333222110000000110000112       2


Q ss_pred             hcCCCcEEEEeCCCCCC--C--CCcH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           78 ACTGVNIAVMVGGFPRK--E--GMER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~--~--g~~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                      .+...|++|+.||....  +  ..+.   .+.+..|+..    ++...+.+.+..++..++|++|+....         .
T Consensus        99 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~---------~  169 (272)
T 4dyv_A           99 KFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISAT---------S  169 (272)
T ss_dssp             HHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTT---------S
T ss_pred             HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhc---------C
Confidence            23479999999997532  1  1222   3456677666    444555555543223578888764431         1


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      +.|....|+.++.-...+.+.++.+++
T Consensus       170 ~~~~~~~Y~asKaa~~~l~~~la~e~~  196 (272)
T 4dyv_A          170 PRPYSAPYTATKHAITGLTKSTSLDGR  196 (272)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhC
Confidence            223223456666666677777787764

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=98.33  E-value=6.7e-07  Score=80.07  Aligned_cols=152  Identities=6%  Similarity=-0.035  Sum_probs=84.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc----ccEEEeCChhhh
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL----KGVVATTDAVEA   78 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~----~~v~~~~~~~~a   78 (300)
                      ++.++|.||||+|++|.+++..|++.|.       +|+++|++.  ++++....++........    .++.-..+..++
T Consensus        24 l~~k~vlITGasggiG~~la~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~   94 (302)
T 1w6u_A           24 FQGKVAFITGGGTGLGKGMTTLLSSLGA-------QCVIASRKM--DVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNT   94 (302)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHH
Confidence            3457899999999999999999998875       789999863  344333333322100000    010000111222


Q ss_pred             c-------CCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHHHhhhc---CCCeEEEEecCchhhHHHHHH
Q 022227           79 C-------TGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHA---APNCKVLVVANPANTNALILK  142 (300)
Q Consensus        79 ~-------~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~~~---~~~~~viv~sNP~~~~~~~~~  142 (300)
                      +       ...|+||++||.....   ..+   ....+..|+.....+.+.+.+..   .+..++|++|+....      
T Consensus        95 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~------  168 (302)
T 1w6u_A           95 VSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAE------  168 (302)
T ss_dssp             HHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHH------
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccc------
Confidence            2       3569999999965321   112   23456778777666655554321   123467777654321      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                       .  +.|....++.++.-...+.+.+++.+
T Consensus       169 -~--~~~~~~~Y~~sK~a~~~~~~~la~~~  195 (302)
T 1w6u_A          169 -T--GSGFVVPSASAKAGVEAMSKSLAAEW  195 (302)
T ss_dssp             -H--CCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -c--CCCCcchhHHHHHHHHHHHHHHHHHh
Confidence             1  22323345566666666777777775

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=98.33  E-value=3.2e-06  Score=74.21  Aligned_cols=152  Identities=16%  Similarity=0.090  Sum_probs=82.5

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE   77 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~   77 (300)
                      |+++.++|.||||+|++|.+++..|++.|.       +|+++|+++  ++++....++......   ...++.-..+..+
T Consensus        10 ~~l~~k~vlITGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~   80 (266)
T 1xq1_A           10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGA-------VIHTCARNE--YELNECLSKWQKKGFQVTGSVCDASLRPEREK   80 (266)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeeEEEECCCCCHHHHHH
Confidence            344557899999999999999999998875       788998853  3343332233221100   0000000001122


Q ss_pred             hc--------CCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHH
Q 022227           78 AC--------TGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNAL  139 (300)
Q Consensus        78 a~--------~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~  139 (300)
                      ++        ...|+||+.||.....   ..+   -.+.+..|+.....+.+.+    ++..  ..++|++|+.....  
T Consensus        81 ~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~--  156 (266)
T 1xq1_A           81 LMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG--CGNIIFMSSIAGVV--  156 (266)
T ss_dssp             HHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SCEEEEEC--------
T ss_pred             HHHHHHHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEccchhcc--
Confidence            22        5789999999975321   112   2345677887777776665    4443  23677777644211  


Q ss_pred             HHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       140 ~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                             +.|....++.++.-...+.+.+++++
T Consensus       157 -------~~~~~~~Y~~sK~a~~~~~~~la~e~  182 (266)
T 1xq1_A          157 -------SASVGSIYSATKGALNQLARNLACEW  182 (266)
T ss_dssp             -----------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------CCCCCchHHHHHHHHHHHHHHHHHHH
Confidence                   12222335556666666667777776

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=98.32  E-value=2.4e-06  Score=75.62  Aligned_cols=150  Identities=13%  Similarity=0.140  Sum_probs=86.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhh------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE------   77 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~------   77 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|++.|+++  ++++....++.........+++-..+..+      
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   80 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA-------RVVLADLPE--TDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTI   80 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECTT--SCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHH
Confidence            456899999999999999999999875       799999864  33433322221100000001100011122      


Q ss_pred             -hcCCCcEEEEeCCCCCC-C----CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           78 -ACTGVNIAVMVGGFPRK-E----GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        78 -a~~~aDvVi~~ag~~~~-~----g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                       .+...|++|+.||.... .    ..+.   ...+..|+.....+.+.+    .+..  ..++|++|+....        
T Consensus        81 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~--------  150 (271)
T 3tzq_B           81 DTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAG--GGAIVNISSATAH--------  150 (271)
T ss_dssp             HHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGT--------
T ss_pred             HHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEECCHHHc--------
Confidence             23378999999997522 1    1122   345677877666666655    4443  3577887765431        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                       .+.|....|+.++.-...+.+.+|.+++
T Consensus       151 -~~~~~~~~Y~asKaa~~~l~~~la~e~~  178 (271)
T 3tzq_B          151 -AAYDMSTAYACTKAAIETLTRYVATQYG  178 (271)
T ss_dssp             -SBCSSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             -CCCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence             1223223455566666677777777754

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=98.32  E-value=4.6e-07  Score=81.70  Aligned_cols=94  Identities=15%  Similarity=0.133  Sum_probs=57.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-CcccEEEeCChhhhcCCCcE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-~~~~v~~~~~~~~a~~~aDv   84 (300)
                      +||+|+||+|++|++++..|+..|.       +|+.++++.. ++.+ ...++...... ...++.-..++.++++++|+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~l~R~~~-~~~~-~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~   82 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH-------PTYVFTRPNS-SKTT-LLDEFQSLGAIIVKGELDEHEKLVELMKKVDV   82 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC-------CEEEEECTTC-SCHH-HHHHHHHTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC-------cEEEEECCCC-chhh-HHHHhhcCCCEEEEecCCCHHHHHHHHcCCCE
Confidence            3899999999999999999998764       5778887642 1111 00111111100 00011111245678999999


Q ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhc
Q 022227           85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA  121 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~  121 (300)
                      ||++++...             ....+++++++++.+
T Consensus        83 vi~~a~~~~-------------~~~~~~l~~aa~~~g  106 (318)
T 2r6j_A           83 VISALAFPQ-------------ILDQFKILEAIKVAG  106 (318)
T ss_dssp             EEECCCGGG-------------STTHHHHHHHHHHHC
T ss_pred             EEECCchhh-------------hHHHHHHHHHHHhcC
Confidence            999987542             223456777777764

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=98.32  E-value=1e-06  Score=76.38  Aligned_cols=151  Identities=15%  Similarity=0.112  Sum_probs=84.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc----ccEEEeCChhhh
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL----KGVVATTDAVEA   78 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~----~~v~~~~~~~~a   78 (300)
                      ++.++|.||||+|++|.+++..|++.|.       +|+++|+++  ++++....++........    .++.-..+..++
T Consensus         5 ~~~~~vlVtGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   75 (248)
T 2pnf_A            5 LQGKVSLVTGSTRGIGRAIAEKLASAGS-------TVIITGTSG--ERAKAVAEEIANKYGVKAHGVEMNLLSEESINKA   75 (248)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHH
Confidence            3567899999999999999999998874       789998863  333322222221000000    000000112223


Q ss_pred             c-------CCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHHHHHHH----HHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           79 C-------TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQA----SALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        79 ~-------~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i~~~i~----~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                      +       .+.|+||++||......   .+   ..+.+..|+.....+.    +.+.+..  ..++|++|+....     
T Consensus        76 ~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~-----  148 (248)
T 2pnf_A           76 FEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQR--WGRIVNISSVVGF-----  148 (248)
T ss_dssp             HHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHT--CEEEEEECCHHHH-----
T ss_pred             HHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CcEEEEEccHHhc-----
Confidence            3       38999999999754221   12   2345677877774444    4444443  2467777753221     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                        .  +.|....++.++.....+.+.+++++.
T Consensus       149 --~--~~~~~~~Y~~sK~a~~~~~~~la~e~~  176 (248)
T 2pnf_A          149 --T--GNVGQVNYSTTKAGLIGFTKSLAKELA  176 (248)
T ss_dssp             --H--CCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             --C--CCCCCchHHHHHHHHHHHHHHHHHHhc
Confidence              1  122222345555555566667777663

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=98.32  E-value=2e-06  Score=75.58  Aligned_cols=151  Identities=13%  Similarity=0.071  Sum_probs=84.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh-ccC---CcccEEEeCChhhh
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFP---LLKGVVATTDAVEA   78 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~-~~~---~~~~v~~~~~~~~a   78 (300)
                      ++.+++.||||+|++|.+++..|++.|.       +|++.|+++  ++++....++... ...   ...++.-..+..++
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~   75 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGA-------HIVLVARQV--DRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAV   75 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence            4567899999999999999999998875       789999863  3443332233211 000   00010000111222


Q ss_pred             -------cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHH
Q 022227           79 -------CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        79 -------~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                             +.+.|++|+.||.....   ..+.   ...+..|+.....+.+.    +.+..  ..++|++|+....     
T Consensus        76 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~-----  148 (263)
T 3ai3_A           76 VESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG--GGAIIHNASICAV-----  148 (263)
T ss_dssp             HHHHHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT-----
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhc-----
Confidence                   23799999999975321   1222   33456676655555444    44443  2467777764431     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                          .+.|....|+.++.-...+.+.++.++.
T Consensus       149 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~~  176 (263)
T 3ai3_A          149 ----QPLWYEPIYNVTKAALMMFSKTLATEVI  176 (263)
T ss_dssp             ----SCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ----CCCCCcchHHHHHHHHHHHHHHHHHHhh
Confidence                1223222455566556666777777653

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=98.32  E-value=6.6e-07  Score=80.21  Aligned_cols=103  Identities=16%  Similarity=0.116  Sum_probs=62.5

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc---hhhhhhhhhhhhhhccC-CcccEEEeCChh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA---AEALNGVKMELVDAAFP-LLKGVVATTDAV   76 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~---~~~l~g~~~dl~~~~~~-~~~~v~~~~~~~   76 (300)
                      |++ ++||+|+||+|++|++++..|+..|.       +|++++++..   .++++.. .++...... ...++.-..++.
T Consensus         1 M~~-~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~d~~~l~   71 (313)
T 1qyd_A            1 MDK-KSRVLIVGGTGYIGKRIVNASISLGH-------PTYVLFRPEVVSNIDKVQML-LYFKQLGAKLIEASLDDHQRLV   71 (313)
T ss_dssp             -CC-CCCEEEESTTSTTHHHHHHHHHHTTC-------CEEEECCSCCSSCHHHHHHH-HHHHTTTCEEECCCSSCHHHHH
T ss_pred             CCC-CCEEEEEcCCcHHHHHHHHHHHhCCC-------cEEEEECCCcccchhHHHHH-HHHHhCCeEEEeCCCCCHHHHH
Confidence            542 46899999999999999999998764       6888887632   1121110 111111100 001111112456


Q ss_pred             hhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhc
Q 022227           77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA  121 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~  121 (300)
                      ++++++|+||++++.....         .|+...+++++++++.+
T Consensus        72 ~~~~~~d~vi~~a~~~~~~---------~~~~~~~~l~~aa~~~g  107 (313)
T 1qyd_A           72 DALKQVDVVISALAGGVLS---------HHILEQLKLVEAIKEAG  107 (313)
T ss_dssp             HHHTTCSEEEECCCCSSSS---------TTTTTHHHHHHHHHHSC
T ss_pred             HHHhCCCEEEECCccccch---------hhHHHHHHHHHHHHhcC
Confidence            7899999999999865321         24555678888888764

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=98.32  E-value=1.8e-06  Score=75.78  Aligned_cols=152  Identities=11%  Similarity=0.123  Sum_probs=91.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCC-------hh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD-------AV   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~-------~~   76 (300)
                      +.+++.||||+|.+|.+++..|++.|.       +|++.|+++  ++++....++.........++.-..+       ..
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA-------EVLLTGRNE--SNIARIREEFGPRVHALRSDIADLNEIAVLGAAAG   77 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHH
Confidence            346899999999999999999999875       799999863  44433222221110000000000001       11


Q ss_pred             hhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCC
Q 022227           77 EACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPA  150 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~  150 (300)
                      +.+...|++|+.||......   .+.   ...+..|+.....+.+.+..+-.+..++|++|+....         .+.|.
T Consensus        78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~---------~~~~~  148 (255)
T 4eso_A           78 QTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADE---------GGHPG  148 (255)
T ss_dssp             HHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGS---------SBCTT
T ss_pred             HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhc---------CCCCC
Confidence            23447899999999864221   122   3457789888888888877653223567887765431         12332


Q ss_pred             CcEEeeehhhHHHHHHHHHHHcC
Q 022227          151 KNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       151 ~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ...|+.++.-...+.+.++.+++
T Consensus       149 ~~~Y~asKaa~~~~~~~la~e~~  171 (255)
T 4eso_A          149 MSVYSASKAALVSFASVLAAELL  171 (255)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHTG
T ss_pred             chHHHHHHHHHHHHHHHHHHHHh
Confidence            23455666666677777888764

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=98.32  E-value=1.3e-06  Score=76.38  Aligned_cols=155  Identities=17%  Similarity=0.167  Sum_probs=88.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhh------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE------   77 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~------   77 (300)
                      +.+++.||||+|.||.+++..|++.|.       ++++.|+++  +.++....++.........+++-..+..+      
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   78 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA-------KVIGTATSE--SGAQAISDYLGDNGKGMALNVTNPESIEAVLKAIT   78 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHH
Confidence            457899999999999999999999875       789999863  44433322222211000001100011122      


Q ss_pred             -hcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           78 -ACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        78 -a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                       .+...|++|+.||......   .+.   ...+..|+.....+.+.+    .+..  ..++|++|+....       .  
T Consensus        79 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~-------~--  147 (248)
T 3op4_A           79 DEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKR--QGRIINVGSVVGT-------M--  147 (248)
T ss_dssp             HHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHH-------H--
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEEcchhhc-------C--
Confidence             2337899999999764321   122   335667766655555544    3343  3467887764321       1  


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      +.|....|+.++.-...+.+.+|++++  +..|+
T Consensus       148 ~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~  179 (248)
T 3op4_A          148 GNAGQANYAAAKAGVIGFTKSMAREVA--SRGVT  179 (248)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHH--HhCeE
Confidence            223233456666666667777787764  33454

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=98.32  E-value=3.9e-06  Score=73.19  Aligned_cols=109  Identities=16%  Similarity=0.127  Sum_probs=71.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh-hhhhhhhhhccCCcccEEEeCChhhhc----C
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN-GVKMELVDAAFPLLKGVVATTDAVEAC----T   80 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~-g~~~dl~~~~~~~~~~v~~~~~~~~a~----~   80 (300)
                      ++|.||||+|+||.+++..|++.|.       +|++.|+++.  +++ ....|+.+..           +..+++    .
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-------~V~~~~r~~~--~~~~~~~~Dl~~~~-----------~v~~~~~~~~~   61 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH-------QIVGIDIRDA--EVIADLSTAEGRKQ-----------AIADVLAKCSK   61 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSSS--SEECCTTSHHHHHH-----------HHHHHHTTCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCch--hhccccccCCCCHH-----------HHHHHHHHhCC
Confidence            4799999999999999999998875       7889988642  221 1345666543           222233    4


Q ss_pred             CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCchh
Q 022227           81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPAN  135 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~~  135 (300)
                      ..|++|+.||..... ..-.+.+..|+.....+.+.+.+.-  .+..++|++|+...
T Consensus        62 ~id~lv~~Ag~~~~~-~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~  117 (257)
T 1fjh_A           62 GMDGLVLCAGLGPQT-KVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVAS  117 (257)
T ss_dssp             CCSEEEECCCCCTTC-SSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGG
T ss_pred             CCCEEEECCCCCCCc-ccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhh
Confidence            569999999976411 2245567778776666665554321  11247888876543

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=98.31  E-value=3.1e-06  Score=74.45  Aligned_cols=157  Identities=12%  Similarity=0.101  Sum_probs=92.1

Q ss_pred             CCCcEEEEEcCCCh--HHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-----CcccEEEeCCh
Q 022227            3 KEPVRVLVTGAAGQ--IGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-----LLKGVVATTDA   75 (300)
Q Consensus         3 ~~~~kV~IiGAaG~--vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-----~~~~v~~~~~~   75 (300)
                      .+.+++.||||+|+  ||..++..|++.|.       +|++.|.++  +..+ ...++......     ...+++-..+.
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~v   74 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA-------RLIFTYAGE--RLEK-SVHELAGTLDRNDSIILPCDVTNDAEI   74 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTC-------EEEEEESSG--GGHH-HHHHHHHTSSSCCCEEEECCCSSSHHH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-------EEEEecCch--HHHH-HHHHHHHhcCCCCceEEeCCCCCHHHH
Confidence            45678999999988  99999999999875       788888753  1111 11122111000     00111101111


Q ss_pred             hhh-------cCCCcEEEEeCCCCCC-----C--CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH
Q 022227           76 VEA-------CTGVNIAVMVGGFPRK-----E--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA  138 (300)
Q Consensus        76 ~~a-------~~~aDvVi~~ag~~~~-----~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~  138 (300)
                      .+.       +...|++|+.||....     +  ..+.   ...+..|+.....+.+.+...-.+..++|++|+....  
T Consensus        75 ~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~--  152 (266)
T 3oig_A           75 ETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGE--  152 (266)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGT--
T ss_pred             HHHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEeccccc--
Confidence            222       2368999999987541     1  1222   3456778888888888887765444678888765431  


Q ss_pred             HHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       139 ~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                             .+.|....|+.++.-...+.+.+++++.  +..|+
T Consensus       153 -------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~  185 (266)
T 3oig_A          153 -------LVMPNYNVMGVAKASLDASVKYLAADLG--KENIR  185 (266)
T ss_dssp             -------SCCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             -------ccCCCcchhHHHHHHHHHHHHHHHHHHh--hcCcE
Confidence                   1233333456666666677777777764  33454

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=98.31  E-value=1.9e-06  Score=74.81  Aligned_cols=147  Identities=16%  Similarity=0.126  Sum_probs=81.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhh-hhhcc---CCcccEEEeCChhhhc--
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL-VDAAF---PLLKGVVATTDAVEAC--   79 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl-~~~~~---~~~~~v~~~~~~~~a~--   79 (300)
                      +++.||||+|++|.+++..|++.|.       +|+++|+++  ++++....++ .....   ....++.-..+..+++  
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   73 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGD-------RVAALDLSA--ETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAA   73 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence            5799999999999999999998874       789998863  3333222222 10000   0000000001122233  


Q ss_pred             -----CCCcEEEEeCCCCCCCC------Cc---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           80 -----TGVNIAVMVGGFPRKEG------ME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        80 -----~~aDvVi~~ag~~~~~g------~~---r~dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                           .+.|+||+.||......      .+   -...+..|+...    +.+.+.+.+..  ..++|++|+....     
T Consensus        74 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~-----  146 (250)
T 2cfc_A           74 TMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG--AGVIVNIASVASL-----  146 (250)
T ss_dssp             HHHHHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT-----
T ss_pred             HHHHhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCEEEEECChhhc-----
Confidence                 37899999998753211      12   233456676555    44455555443  2467777764431     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                          .+.|....++.++.-...+.+.+++++
T Consensus       147 ----~~~~~~~~Y~~sK~a~~~~~~~l~~e~  173 (250)
T 2cfc_A          147 ----VAFPGRSAYTTSKGAVLQLTKSVAVDY  173 (250)
T ss_dssp             ----SCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----cCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence                122322345556665666666777766

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=98.31  E-value=5.6e-06  Score=73.39  Aligned_cols=154  Identities=15%  Similarity=0.147  Sum_probs=91.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh--
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a--   78 (300)
                      +.+++.||||+|.||.+++..|++.|.       .+++.|.+. .++++....++......   ...++.-..+..++  
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~  101 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA-------AVALTYVNA-AERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIR  101 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence            457899999999999999999999875       788887653 33444333333321100   00011000111222  


Q ss_pred             -----cCCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCC
Q 022227           79 -----CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS  147 (300)
Q Consensus        79 -----~~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~  147 (300)
                           +...|++|+.||......   .+   -...+..|+.....+.+.+.+.-.+..++|++++....       . ..
T Consensus       102 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~-------~-~~  173 (271)
T 3v2g_A          102 ETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAE-------L-VP  173 (271)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGT-------C-CC
T ss_pred             HHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhc-------c-CC
Confidence                 237899999999754221   12   23457778887777777776653334578888765431       0 12


Q ss_pred             CCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          148 IPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       148 ~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .|....|+.++.-...+.+.+|++++
T Consensus       174 ~~~~~~Y~asKaa~~~l~~~la~e~~  199 (271)
T 3v2g_A          174 WPGISLYSASKAALAGLTKGLARDLG  199 (271)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhh
Confidence            33333456666666677777887774

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.30  E-value=5.1e-06  Score=72.35  Aligned_cols=157  Identities=18%  Similarity=0.114  Sum_probs=86.9

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhh---
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE---   77 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~---   77 (300)
                      |+++.+++.||||+|.+|..++..|++.|.       ++++.|+++  ++++....++. .. ....++.-..+..+   
T Consensus         1 m~l~~k~vlVTGas~giG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~-~~-~~~~D~~~~~~~~~~~~   69 (245)
T 1uls_A            1 MRLKDKAVLITGAAHGIGRATLELFAKEGA-------RLVACDIEE--GPLREAAEAVG-AH-PVVMDVADPASVERGFA   69 (245)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTTT-CE-EEECCTTCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHcC-CE-EEEecCCCHHHHHHHHH
Confidence            667778999999999999999999998875       788998863  33332221110 00 00000000001112   


Q ss_pred             ----hcCCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCchhhHHHHHHHHC
Q 022227           78 ----ACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        78 ----a~~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                          .+...|++|+.||......   .+   -...+..|+.....+.+.+.++-  .+..++|++|+.. ..        
T Consensus        70 ~~~~~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~-~~--------  140 (245)
T 1uls_A           70 EALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV-YL--------  140 (245)
T ss_dssp             HHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG-GG--------
T ss_pred             HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccch-hc--------
Confidence                2335899999999754221   12   23456778777666665554431  1134677777543 21        


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                       +.|....++.++.-...+.+.++.++.  +..|+
T Consensus       141 -~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~  172 (245)
T 1uls_A          141 -GNLGQANYAASMAGVVGLTRTLALELG--RWGIR  172 (245)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             -CCCCchhHHHHHHHHHHHHHHHHHHHh--HhCeE
Confidence             122222344444444556666776653  33454

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=98.30  E-value=2.8e-06  Score=75.55  Aligned_cols=156  Identities=15%  Similarity=0.109  Sum_probs=90.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEE-EeCC------hh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVV-ATTD------AV   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~-~~~~------~~   76 (300)
                      +.+++.||||+|+||.+++..|++.|.       +|++.|+++  ++++....++...... ..++. +..|      ..
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~-~~~~~~~~~Dv~~~~~v~   79 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-------SVMIVGRNP--DKLAGAVQELEALGAN-GGAIRYEPTDITNEDETA   79 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTCCS-SCEEEEEECCTTSHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhCCC-CceEEEEeCCCCCHHHHH
Confidence            457899999999999999999998875       799999863  4444444444322110 00111 1111      11


Q ss_pred             hh-------cCCCcEEEEeCCCCCCC----CCcH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCchhhHHHH
Q 022227           77 EA-------CTGVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALI  140 (300)
Q Consensus        77 ~a-------~~~aDvVi~~ag~~~~~----g~~r---~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~~~~~~~  140 (300)
                      ++       +...|++|+.||.....    ..+.   ...+..|+.....+.+.+.++-  .+..++|++|+....    
T Consensus        80 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~----  155 (281)
T 3svt_A           80 RAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAAS----  155 (281)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHH----
T ss_pred             HHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHc----
Confidence            22       23679999999973221    1222   3456678776666555444321  123578888764321    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                           .+.|....|+.++.-...+.+.+|.+++  +..|+
T Consensus       156 -----~~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~  188 (281)
T 3svt_A          156 -----NTHRWFGAYGVTKSAVDHLMQLAADELG--ASWVR  188 (281)
T ss_dssp             -----SCCTTCTHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             -----CCCCCChhHHHHHHHHHHHHHHHHHHhh--hcCeE
Confidence                 1233333466677667778888888875  33454

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.30  E-value=1.6e-06  Score=74.97  Aligned_cols=156  Identities=15%  Similarity=0.095  Sum_probs=81.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcc--cCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-CCcccEEEeCChhhhcC-
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGV--MLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACT-   80 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~--~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-~~~~~v~~~~~~~~a~~-   80 (300)
                      .++|+||||+|++|.+++..|++.|  .       +|+++|++.  ++++.. .++..... ....++.-..+..++++ 
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~-------~V~~~~r~~--~~~~~l-~~~~~~~~~~~~~D~~~~~~~~~~~~~   72 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIR-------HIIATARDV--EKATEL-KSIKDSRVHVLPLTVTCDKSLDTFVSK   72 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCC-------EEEEEESSG--GGCHHH-HTCCCTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCc-------EEEEEecCH--HHHHHH-HhccCCceEEEEeecCCHHHHHHHHHH
Confidence            4589999999999999999999876  4       788998864  333211 11100000 00000000011222333 


Q ss_pred             --------CCcEEEEeCCCCC-C-C--CCcH---HHHHHhhHHHHHHHHHHHhh----h------cC---CCeEEEEecC
Q 022227           81 --------GVNIAVMVGGFPR-K-E--GMER---KDVMSKNVSIYKAQASALEQ----H------AA---PNCKVLVVAN  132 (300)
Q Consensus        81 --------~aDvVi~~ag~~~-~-~--g~~r---~dl~~~N~~i~~~i~~~i~~----~------~~---~~~~viv~sN  132 (300)
                              +.|+||++||... . +  ..+.   ...+..|+.....+.+.+.+    .      ..   +..++|++|+
T Consensus        73 ~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS  152 (250)
T 1yo6_A           73 VGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISS  152 (250)
T ss_dssp             HHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECC
T ss_pred             HHHhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEecc
Confidence                    7999999998754 1 1  1122   34566676665555544433    2      20   0246777776


Q ss_pred             chhhHHHHHHHHCCCC-CCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          133 PANTNALILKEFAPSI-PAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       133 P~~~~~~~~~~~~~~~-p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ........   ..... +....++.++.-...+.+.+++++.
T Consensus       153 ~~~~~~~~---~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~  191 (250)
T 1yo6_A          153 GLGSITDN---TSGSAQFPVLAYRMSKAAINMFGRTLAVDLK  191 (250)
T ss_dssp             GGGCSTTC---CSTTSSSCBHHHHHHHHHHHHHHHHHHHHTG
T ss_pred             CccccCCc---ccccccCCccHHHHHHHHHHHHHHHHHHHhc
Confidence            54311000   00000 1122355566666667777777763

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=98.29  E-value=3.6e-06  Score=73.74  Aligned_cols=151  Identities=15%  Similarity=0.078  Sum_probs=84.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhh----
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA----   78 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a----   78 (300)
                      ++.+++.||||+|.+|..++..|++.|.       +|++.|+++  ++++....++.........++.-..+..++    
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   73 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGA-------RVVLADVLD--EEGAATARELGDAARYQHLDVTIEEDWQRVVAYA   73 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHH
Confidence            3457899999999999999999998875       789999863  334322222210000000010000112222    


Q ss_pred             ---cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHC
Q 022227           79 ---CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        79 ---~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                         +...|++|+.||.....   ..+.   ...+..|+...    +.+.+.+++..  ..++|++|+....         
T Consensus        74 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~---------  142 (254)
T 1hdc_A           74 REEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG--GGSIVNISSAAGL---------  142 (254)
T ss_dssp             HHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhc---------
Confidence               23799999999975421   1122   34566676554    45666666553  2467887764431         


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .+.|....++.++.-...+.+.++.+++
T Consensus       143 ~~~~~~~~Y~asK~a~~~~~~~la~e~~  170 (254)
T 1hdc_A          143 MGLALTSSYGASKWGVRGLSKLAAVELG  170 (254)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHhh
Confidence            1223222455555555666677777764

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=98.29  E-value=7.2e-07  Score=78.19  Aligned_cols=123  Identities=16%  Similarity=0.097  Sum_probs=75.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHh-cccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC---cccEEEeCChhhh
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAVEA   78 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~-~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~---~~~v~~~~~~~~a   78 (300)
                      ++.++|.||||+|+||++++..|++ .|.       +|++++++.  ++++....++.......   ..++.-..+..++
T Consensus         2 ~~~k~vlITGasggIG~~~a~~L~~~~g~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~   72 (276)
T 1wma_A            2 SGIHVALVTGGNKGIGLAIVRDLCRLFSG-------DVVLTARDV--TRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRAL   72 (276)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSS-------EEEEEESSH--HHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHhcCC-------eEEEEeCCh--HHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHH
Confidence            3457899999999999999999998 774       788998853  33333333332211000   0011000112222


Q ss_pred             cC-------CCcEEEEeCCCCCCCC------CcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           79 CT-------GVNIAVMVGGFPRKEG------MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        79 ~~-------~aDvVi~~ag~~~~~g------~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                      ++       ..|+||++||......      .+-...+..|+.....+.+.+.+...+..++|++|+..
T Consensus        73 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~  141 (276)
T 1wma_A           73 RDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIM  141 (276)
T ss_dssp             HHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHH
T ss_pred             HHHHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChh
Confidence            32       7899999998754221      11234578899999999998887643234677777644

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=98.29  E-value=3.1e-06  Score=73.33  Aligned_cols=156  Identities=15%  Similarity=0.124  Sum_probs=86.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChh-------h
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAV-------E   77 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~-------~   77 (300)
                      .+++.||||+|.||.+++..|++.|.       +|++.|+++  ++++....++.........+++-..+..       +
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   73 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH-------QVSMMGRRY--QRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVE   73 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHH
Confidence            35899999999999999999998875       799999863  4444333333111000000000000111       2


Q ss_pred             hcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEecCchhhHHHHHHHHCCCCCC
Q 022227           78 ACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALILKEFAPSIPA  150 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~-~~~~~viv~sNP~~~~~~~~~~~~~~~p~  150 (300)
                      .+...|++|+.||.....   ..+.   ...+..|+.....+.+.+...- .++.++|++|+....         .+.|.
T Consensus        74 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~---------~~~~~  144 (235)
T 3l6e_A           74 WGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQ---------VGKAN  144 (235)
T ss_dssp             HHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECC---------SSCSS
T ss_pred             hcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhc---------CCCCC
Confidence            234679999999975321   1222   3456778777766665554331 112367777764421         11222


Q ss_pred             CcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          151 KNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       151 ~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      ...|+.++.-...+.+.++++++  +..|+
T Consensus       145 ~~~Y~asKaa~~~~~~~la~e~~--~~gi~  172 (235)
T 3l6e_A          145 ESLYCASKWGMRGFLESLRAELK--DSPLR  172 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT--TSSEE
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhh--ccCCE
Confidence            22345555556677777888765  34454

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=98.29  E-value=6.5e-06  Score=73.80  Aligned_cols=154  Identities=16%  Similarity=0.111  Sum_probs=92.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCC------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTD------   74 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~------   74 (300)
                      +.+++.||||+|.||.+++..|++.|.       ++++.|.+...+.++.....+......   ...++.-..+      
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~  120 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-------DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVH  120 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHH
Confidence            346899999999999999999999875       788888753223333222222211100   0001100001      


Q ss_pred             -hhhhcCCCcEEEEeCCCCCCC----CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           75 -AVEACTGVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        75 -~~~a~~~aDvVi~~ag~~~~~----g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                       ..+.+...|++|+.||.....    ..+.   ...+..|+.....+.+.+...-.+..++|++|+....         .
T Consensus       121 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~---------~  191 (294)
T 3r3s_A          121 KAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAY---------Q  191 (294)
T ss_dssp             HHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGT---------S
T ss_pred             HHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhc---------c
Confidence             112234789999999974321    1222   3467889988888888887765444578887764431         1


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      +.|....|+.++.-...+.+.+|+++.
T Consensus       192 ~~~~~~~Y~asKaa~~~l~~~la~e~~  218 (294)
T 3r3s_A          192 PSPHLLDYAATKAAILNYSRGLAKQVA  218 (294)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence            233223456666666677777887773

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=98.28  E-value=1.5e-06  Score=76.90  Aligned_cols=150  Identities=16%  Similarity=0.257  Sum_probs=82.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCCh-------h
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDA-------V   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~-------~   76 (300)
                      +.+++.||||+|.||.+++..|++.|.       .|++.|.++  ++++....++.........++.-..+.       .
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   96 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA-------IVGLHGTRE--DKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAE   96 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHH
Confidence            457899999999999999999999875       788998863  444433222211000000000000011       1


Q ss_pred             hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           77 EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                      +.+...|++|+.||.....   ..+.   ...+..|+..    ++.+.+.+.+..  ..++|++|+.....         
T Consensus        97 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~Iv~isS~~~~~---------  165 (266)
T 3grp_A           97 REMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR--YGRIINITSIVGVV---------  165 (266)
T ss_dssp             HHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCC-------------
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcEEEEECCHHHcC---------
Confidence            2234789999999975421   1222   3456677766    555666665553  34788887654321         


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      +.|....|+.++.-...+.+.+|++++
T Consensus       166 ~~~~~~~Y~asKaa~~~~~~~la~e~~  192 (266)
T 3grp_A          166 GNPGQTNYCAAKAGLIGFSKALAQEIA  192 (266)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHhh
Confidence            112112345555555566677777764

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=98.28  E-value=5.9e-06  Score=73.39  Aligned_cols=160  Identities=14%  Similarity=0.135  Sum_probs=88.7

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc--cCCcccEEEeCChh--
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--FPLLKGVVATTDAV--   76 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~--~~~~~~v~~~~~~~--   76 (300)
                      |+++.+++.||||+|.+|..++..|++.|.       +|++.|+++  ++++....++....  .....++.-..+..  
T Consensus        25 ~~l~~k~vlVTGas~gIG~aia~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~   95 (276)
T 2b4q_A           25 FSLAGRIALVTGGSRGIGQMIAQGLLEAGA-------RVFICARDA--EACADTATRLSAYGDCQAIPADLSSEAGARRL   95 (276)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHHTTSSCEEECCCCTTSHHHHHHH
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCceEEEEeeCCCHHHHHHH
Confidence            334557899999999999999999998875       799999863  34433322332110  00000100000111  


Q ss_pred             -----hhcCCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHH----HHHHHHHhhhcCC--CeEEEEecCchhhHHH
Q 022227           77 -----EACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIY----KAQASALEQHAAP--NCKVLVVANPANTNAL  139 (300)
Q Consensus        77 -----~a~~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~----~~i~~~i~~~~~~--~~~viv~sNP~~~~~~  139 (300)
                           +.+...|++|+.||.....   ..+   -...+..|+...    +.+.+.+++...+  ..++|++|+....   
T Consensus        96 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~---  172 (276)
T 2b4q_A           96 AQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGI---  172 (276)
T ss_dssp             HHHHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGT---
T ss_pred             HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHc---
Confidence                 2234789999999975321   112   234566776665    4444555444310  1467777764421   


Q ss_pred             HHHHHCCCCCCCc-EEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          140 ILKEFAPSIPAKN-ITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       140 ~~~~~~~~~p~~~-i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                            .+.|... .|+.++.-...+.+.+++++.  +..|+
T Consensus       173 ------~~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gI~  206 (276)
T 2b4q_A          173 ------SAMGEQAYAYGPSKAALHQLSRMLAKELV--GEHIN  206 (276)
T ss_dssp             ------CCCCCSCTTHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             ------CCCCCCccccHHHHHHHHHHHHHHHHHhc--ccCeE
Confidence                  1223233 455566666677777777764  33455

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=98.28  E-value=3e-06  Score=74.73  Aligned_cols=150  Identities=9%  Similarity=-0.017  Sum_probs=85.4

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhh---------hhhhhhccCCcccEEE
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK---------MELVDAAFPLLKGVVA   71 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~---------~dl~~~~~~~~~~v~~   71 (300)
                      |+++.++|.||||+|.||.+++..|++.|.       +|++.|+++.  ++....         .|+.+...  ...  .
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~Dv~~~~~--v~~--~   89 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGH-------RVIISYRTEH--ASVTELRQAGAVALYGDFSCETG--IMA--F   89 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTC-------CEEEEESSCC--HHHHHHHHHTCEEEECCTTSHHH--HHH--H
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCChH--HHHHHHHhcCCeEEECCCCCHHH--HHH--H
Confidence            344556899999999999999999999875       6899998752  221111         12211110  000  0


Q ss_pred             eCChhhhcCCCcEEEEeCCCCCCCC--CcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHH
Q 022227           72 TTDAVEACTGVNIAVMVGGFPRKEG--MER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        72 ~~~~~~a~~~aDvVi~~ag~~~~~g--~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                      .....+.+...|++|+.||......  .+.   ...+..|+.....+.+.+    .+..  ..++|++|+....      
T Consensus        90 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~------  161 (260)
T 3gem_A           90 IDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASE--VADIVHISDDVTR------  161 (260)
T ss_dssp             HHHHHHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS--SCEEEEECCGGGG------
T ss_pred             HHHHHHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CcEEEEECChhhc------
Confidence            0011222347899999999754322  222   235667766655555544    3332  2468888765431      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcCC
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNV  174 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v  174 (300)
                         .+.|....|+.++.-...+.+.+|.+++-
T Consensus       162 ---~~~~~~~~Y~asKaa~~~l~~~la~e~~~  190 (260)
T 3gem_A          162 ---KGSSKHIAYCATKAGLESLTLSFAARFAP  190 (260)
T ss_dssp             ---TCCSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ---CCCCCcHhHHHHHHHHHHHHHHHHHHHCC
Confidence               12332334566666667778888888864

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=98.28  E-value=8.9e-07  Score=78.21  Aligned_cols=101  Identities=12%  Similarity=0.131  Sum_probs=60.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHhc--ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-CCcccEEEeCChhhhcCCCc
Q 022227            7 RVLVTGAAGQIGYALVPMIARG--VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~--~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ||+||||+|++|++++..|+..  |.       +|+++++++  +++..    +.+... ....++.-..+..++++++|
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-------~V~~~~r~~--~~~~~----~~~~~~~~~~~D~~d~~~~~~~~~~~d   67 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-------QIVAIVRNP--AKAQA----LAAQGITVRQADYGDEAALTSALQGVE   67 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-------GEEEEESCT--TTCHH----HHHTTCEEEECCTTCHHHHHHHTTTCS
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-------eEEEEEcCh--Hhhhh----hhcCCCeEEEcCCCCHHHHHHHHhCCC
Confidence            5899999999999999999876  54       688888754  22221    111000 00001101123567789999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      +||++|+...          ..|+...+++++.+++.+.+  ++|.+|.
T Consensus        68 ~vi~~a~~~~----------~~~~~~~~~l~~a~~~~~~~--~~v~~Ss  104 (286)
T 2zcu_A           68 KLLLISSSEV----------GQRAPQHRNVINAAKAAGVK--FIAYTSL  104 (286)
T ss_dssp             EEEECC------------------CHHHHHHHHHHHHTCC--EEEEEEE
T ss_pred             EEEEeCCCCc----------hHHHHHHHHHHHHHHHcCCC--EEEEECC
Confidence            9999998531          14677888999998887532  5666654

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=98.27  E-value=5e-06  Score=72.95  Aligned_cols=156  Identities=15%  Similarity=0.146  Sum_probs=89.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh-
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-   78 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a-   78 (300)
                      ++.++|.||||+|.+|.+++..|++.|.       +|++.|+++  ++++....++......   ...++.-..+..++ 
T Consensus         7 l~~k~vlVTGas~giG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   77 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELASLGA-------SVYTCSRNQ--KELNDCLTQWRSKGFKVEASVCDLSSRSERQELM   77 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence            4457899999999999999999999875       789999863  3443332233211100   00000000011122 


Q ss_pred             ------c-CCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHH
Q 022227           79 ------C-TGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        79 ------~-~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                            + ...|++|+.||.....   ..+   -...+..|+.....+.+.+    .+..  ..++|++|+....     
T Consensus        78 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~-----  150 (260)
T 2ae2_A           78 NTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASE--RGNVVFISSVSGA-----  150 (260)
T ss_dssp             HHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTS--SEEEEEECCGGGT-----
T ss_pred             HHHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhc-----
Confidence                  2 5799999999975421   112   2345667777666665555    3332  3467777764421     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                          .+.|....|+.++.-...+.+.+++++.  +..|+
T Consensus       151 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~  183 (260)
T 2ae2_A          151 ----LAVPYEAVYGATKGAMDQLTRCLAFEWA--KDNIR  183 (260)
T ss_dssp             ----SCCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEE
T ss_pred             ----cCCCCcchHHHHHHHHHHHHHHHHHHHh--hcCcE
Confidence                1233333456666666677777887764  33454

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=98.26  E-value=8.5e-06  Score=70.69  Aligned_cols=158  Identities=13%  Similarity=0.183  Sum_probs=91.0

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE   77 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~   77 (300)
                      |+.+.+++.||||+|.+|++++..|++.|.       ++++.|.++  ++++....++......   ...++.-..+..+
T Consensus         1 m~l~~k~vlITGas~gIG~~~a~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~   71 (247)
T 3lyl_A            1 MSLNEKVALVTGASRGIGFEVAHALASKGA-------TVVGTATSQ--ASAEKFENSMKEKGFKARGLVLNISDIESIQN   71 (247)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEEecCCCHHHHHH
Confidence            777778999999999999999999999875       789998863  4444333333221100   0000000001111


Q ss_pred             h-------cCCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHH
Q 022227           78 A-------CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        78 a-------~~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                      .       +...|++|+.||......   .+   -...+..|+.....+.+.    +.+..  ..++|++|+....    
T Consensus        72 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~----  145 (247)
T 3lyl_A           72 FFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKR--WGRIISIGSVVGS----  145 (247)
T ss_dssp             HHHHHHHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHH----
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CeEEEEEcchhhc----
Confidence            1       235799999999864321   12   234566776665555544    44432  3578888765431    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                         .  +.|....++.++.-...+.+.+++++.  +..|+
T Consensus       146 ---~--~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~  178 (247)
T 3lyl_A          146 ---A--GNPGQTNYCAAKAGVIGFSKSLAYEVA--SRNIT  178 (247)
T ss_dssp             ---H--CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             ---c--CCCCcHHHHHHHHHHHHHHHHHHHHHH--HcCeE
Confidence               1  223233456666666667777777764  33454

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=98.25  E-value=4.3e-06  Score=71.93  Aligned_cols=150  Identities=11%  Similarity=0.108  Sum_probs=86.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC---
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV---   82 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a---   82 (300)
                      ++|.||||+|.+|..++..|+..|.       +|++.|+++  ++++....++.........++.-..+..+.++.+   
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   72 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK-------ATYLTGRSE--SKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSI   72 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC-------CEEEEESCH--HHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSC
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhc
Confidence            4699999999999999999999875       689999863  4444332222110000000111111122233332   


Q ss_pred             -cEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHHhhhcCC-CeEEEEecCchhhHHHHHHHHCCCCCCCcEE
Q 022227           83 -NIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQHAAP-NCKVLVVANPANTNALILKEFAPSIPAKNIT  154 (300)
Q Consensus        83 -DvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~~~~~~-~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~  154 (300)
                       |++|+.||......   .+.   ...+..|+.....+.+.+.+.-.+ ...+|++|+....         .+.|....+
T Consensus        73 ~d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~---------~~~~~~~~Y  143 (230)
T 3guy_A           73 PSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQ---------QPKAQESTY  143 (230)
T ss_dssp             CSEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGT---------SCCTTCHHH
T ss_pred             CCEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccC---------CCCCCCchh
Confidence             99999998754221   122   345677877777776665554221 2367777765431         122323345


Q ss_pred             eeehhhHHHHHHHHHHHcC
Q 022227          155 CLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       155 ~~t~ld~~R~~~~la~~l~  173 (300)
                      +.++.-...+.+.++++++
T Consensus       144 ~asKaa~~~~~~~la~e~~  162 (230)
T 3guy_A          144 CAVKWAVKGLIESVRLELK  162 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6666666778888888876

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.25  E-value=8e-06  Score=77.47  Aligned_cols=115  Identities=14%  Similarity=0.139  Sum_probs=68.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC----------cccEEEeCCh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL----------LKGVVATTDA   75 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~----------~~~v~~~~~~   75 (300)
                      |||+|+| +|.||..++..|++.|.       +|+++|+++  ++++...........+.          ..++..+++.
T Consensus         1 mkI~VIG-~G~vG~~~A~~la~~G~-------~V~~~d~~~--~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~   70 (436)
T 1mv8_A            1 MRISIFG-LGYVGAVCAGCLSARGH-------EVIGVDVSS--TKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDF   70 (436)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCH
Confidence            4899999 79999999999998764       799999863  44432211000000000          1246778888


Q ss_pred             hhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCC---CeEEEEe-cCchhh
Q 022227           76 VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP---NCKVLVV-ANPANT  136 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~---~~~viv~-sNP~~~  136 (300)
                      .+++++||+||++...|..... .     .+...+++.++.+.++.++   +..++.. |+|...
T Consensus        71 ~~~~~~aDvviiaVptp~~~~~-~-----~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~  129 (436)
T 1mv8_A           71 KKAVLDSDVSFICVGTPSKKNG-D-----LDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGT  129 (436)
T ss_dssp             HHHHHTCSEEEECCCCCBCTTS-S-----BCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred             HHHhccCCEEEEEcCCCcccCC-C-----cchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCc
Confidence            8889999999999766543221 1     1222333444444443333   4444444 677554

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.25  E-value=5.3e-06  Score=79.70  Aligned_cols=112  Identities=15%  Similarity=0.113  Sum_probs=71.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC----------cccEEEeC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL----------LKGVVATT   73 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~----------~~~v~~~~   73 (300)
                      .+|||+|+| +|.+|..++..|++.|.       +|+++|+++  ++++...........+.          ..++..++
T Consensus         7 ~~~~I~VIG-~G~vG~~lA~~la~~G~-------~V~~~d~~~--~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~tt   76 (478)
T 2y0c_A            7 GSMNLTIIG-SGSVGLVTGACLADIGH-------DVFCLDVDQ--AKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFST   76 (478)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEEC
T ss_pred             CCceEEEEC-cCHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEEC
Confidence            358999999 89999999999998774       799999963  44432211100000000          13577888


Q ss_pred             ChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEec
Q 022227           74 DAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA  131 (300)
Q Consensus        74 ~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~s  131 (300)
                      +..+++++||+||++...|.+...      ..+...++++++.+.++.+++..++..|
T Consensus        77 d~~~a~~~aDvviiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~~~iVV~~S  128 (478)
T 2y0c_A           77 DIEAAVAHGDVQFIAVGTPPDEDG------SADLQYVLAAARNIGRYMTGFKVIVDKS  128 (478)
T ss_dssp             CHHHHHHHCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             CHHHHhhcCCEEEEEeCCCcccCC------CccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            888889999999999766543221      1233445566666666655555444443

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=98.25  E-value=4.4e-06  Score=72.92  Aligned_cols=157  Identities=15%  Similarity=0.124  Sum_probs=89.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChh------
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAV------   76 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~------   76 (300)
                      .+.+++.||||+|.||.+++..|++.|.       +|++.|+++  ++++....++.........++.-..+..      
T Consensus         4 l~gk~vlVTGas~gIG~a~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   74 (247)
T 3rwb_A            4 LAGKTALVTGAAQGIGKAIAARLAADGA-------TVIVSDINA--EGAKAAAASIGKKARAIAADISDPGSVKALFAEI   74 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHH
Confidence            3567899999999999999999999875       789999863  4443332222111000001111011112      


Q ss_pred             -hhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHHHHHC
Q 022227           77 -EACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        77 -~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                       +.+...|++|+.||......   .+.   ...+..|+.....+.+.    +++... ..++|++|+....       . 
T Consensus        75 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~-------~-  145 (247)
T 3rwb_A           75 QALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGK-AGRVISIASNTFF-------A-  145 (247)
T ss_dssp             HHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCTHHH-------H-
T ss_pred             HHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CcEEEEECchhhc-------c-
Confidence             22347899999999753221   122   33566776665555554    665542 3567777764421       1 


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                       +.|....|+.++.-...+.+.+|.+++  +..|+
T Consensus       146 -~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~  177 (247)
T 3rwb_A          146 -GTPNMAAYVAAKGGVIGFTRALATELG--KYNIT  177 (247)
T ss_dssp             -TCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             -CCCCchhhHHHHHHHHHHHHHHHHHhh--hcCeE
Confidence             223223455566556667777777764  34454

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=98.25  E-value=2.7e-06  Score=74.01  Aligned_cols=155  Identities=13%  Similarity=0.153  Sum_probs=85.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhh---hcC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE---ACT   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~---a~~   80 (300)
                      +.++|.||||+|.+|.+++..|++.|.       ++++.|+++  ++++....++.........++.-..+..+   .+.
T Consensus        13 ~~k~vlVTGas~gIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   83 (249)
T 3f9i_A           13 TGKTSLITGASSGIGSAIARLLHKLGS-------KVIISGSNE--EKLKSLGNALKDNYTIEVCNLANKEECSNLISKTS   83 (249)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcC
Confidence            457899999999999999999998875       789999863  44443333332111000000000001122   234


Q ss_pred             CCcEEEEeCCCCCCC------CCcHHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCC
Q 022227           81 GVNIAVMVGGFPRKE------GMERKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKEFAPSIPA  150 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~------g~~r~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~  150 (300)
                      ..|++|+.||.....      .++-...+..|+.....+.+.    +.+..  ..++|++|+....         .+.|.
T Consensus        84 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~---------~~~~~  152 (249)
T 3f9i_A           84 NLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKR--YGRIINISSIVGI---------AGNPG  152 (249)
T ss_dssp             CCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCCCC-----------CCSC
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcEEEEEccHHhc---------cCCCC
Confidence            789999999875321      122345566776655555444    44432  3478888765431         12232


Q ss_pred             CcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          151 KNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       151 ~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      ...|+.++.-...+.+.+++++.  +..|+
T Consensus       153 ~~~Y~~sK~a~~~~~~~la~e~~--~~gi~  180 (249)
T 3f9i_A          153 QANYCASKAGLIGMTKSLSYEVA--TRGIT  180 (249)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             CchhHHHHHHHHHHHHHHHHHHH--HcCcE
Confidence            33456666666667777777764  33454

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=98.24  E-value=2.1e-05  Score=69.17  Aligned_cols=152  Identities=14%  Similarity=0.131  Sum_probs=87.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc----ccEEEeCChhh-
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL----KGVVATTDAVE-   77 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~----~~v~~~~~~~~-   77 (300)
                      .+.+++.||||+|.||.+++..|++.|.       +|++.|+++  ++++....++........    .+++-..+..+ 
T Consensus         8 l~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~   78 (262)
T 3pk0_A            8 LQGRSVVVTGGTKGIGRGIATVFARAGA-------NVAVAGRST--ADIDACVADLDQLGSGKVIGVQTDVSDRAQCDAL   78 (262)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHH
Confidence            4567899999999999999999999875       799999863  455444444432210000    01100001122 


Q ss_pred             ------hcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHH
Q 022227           78 ------ACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        78 ------a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                            .+...|++|+.||.....   ..+.   ...+..|+.....+.+.    +.+..  ..++|++|+.....    
T Consensus        79 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~----  152 (262)
T 3pk0_A           79 AGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASG--SGRVVLTSSITGPI----  152 (262)
T ss_dssp             HHHHHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHS--SCEEEEECCSBTTT----
T ss_pred             HHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEechhhcc----
Confidence                  233789999999975321   2222   23466776655555444    44333  24677777644210    


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                          .+.|....|+.++.-...+.+.+|.++.
T Consensus       153 ----~~~~~~~~Y~asK~a~~~l~~~la~e~~  180 (262)
T 3pk0_A          153 ----TGYPGWSHYGATKAAQLGFMRTAAIELA  180 (262)
T ss_dssp             ----BCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ----CCCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence                1233333456666666677777887764

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=98.24  E-value=5.8e-06  Score=73.37  Aligned_cols=158  Identities=14%  Similarity=0.132  Sum_probs=90.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh--
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE--   77 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~--   77 (300)
                      ++.+++.||||+|.||.+++..|++.|.       +|+++|+++  ++++....++......   ...++.-..+..+  
T Consensus        20 l~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   90 (277)
T 2rhc_B           20 QDSEVALVTGATSGIGLEIARRLGKEGL-------RVFVCARGE--EGLRTTLKELREAGVEADGRTCDVRSVPEIEALV   90 (277)
T ss_dssp             TTSCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHH
Confidence            4557899999999999999999998875       789999863  3443322233211100   0000000001112  


Q ss_pred             -----hcCCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHHHHHHHHHHhhh--c--CCCeEEEEecCchhhHHHHHH
Q 022227           78 -----ACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQH--A--APNCKVLVVANPANTNALILK  142 (300)
Q Consensus        78 -----a~~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~--~--~~~~~viv~sNP~~~~~~~~~  142 (300)
                           .+...|++|+.||......   .+   -...+..|+.....+.+.+.+.  -  .+..++|++|+....      
T Consensus        91 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~------  164 (277)
T 2rhc_B           91 AAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGK------  164 (277)
T ss_dssp             HHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGT------
T ss_pred             HHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccc------
Confidence                 2337899999999754221   12   2345777888877777765443  0  012467777764431      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                         .+.|....|+.++.-...+.+.++.++.  +..|+
T Consensus       165 ---~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~  197 (277)
T 2rhc_B          165 ---QGVVHAAPYSASKHGVVGFTKALGLELA--RTGIT  197 (277)
T ss_dssp             ---SCCTTCHHHHHHHHHHHHHHHHHHHHHT--TTEEE
T ss_pred             ---cCCCCCccHHHHHHHHHHHHHHHHHHHH--HhCcE
Confidence               1223222355555555667777777764  33454

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=98.24  E-value=2.6e-06  Score=75.37  Aligned_cols=149  Identities=13%  Similarity=0.072  Sum_probs=80.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-CcccEEEeCChhhhcCCCc
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-~~~~v~~~~~~~~a~~~aD   83 (300)
                      +|||+|||| |++|++++..|+..|.       +|+.+++++  +++..    +...... ...++   ++. + ++++|
T Consensus         5 ~~~ilVtGa-G~iG~~l~~~L~~~g~-------~V~~~~r~~--~~~~~----~~~~~~~~~~~D~---~d~-~-~~~~d   65 (286)
T 3ius_A            5 TGTLLSFGH-GYTARVLSRALAPQGW-------RIIGTSRNP--DQMEA----IRASGAEPLLWPG---EEP-S-LDGVT   65 (286)
T ss_dssp             CCEEEEETC-CHHHHHHHHHHGGGTC-------EEEEEESCG--GGHHH----HHHTTEEEEESSS---SCC-C-CTTCC
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHCCC-------EEEEEEcCh--hhhhh----HhhCCCeEEEecc---ccc-c-cCCCC
Confidence            479999996 9999999999998874       788888763  22211    1111100 00000   122 2 78999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH----HHHHHCCCCCCCcEEeeehh
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLTRL  159 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~----~~~~~~~~~p~~~i~~~t~l  159 (300)
                      +|||+|+.....  +         +..+.+.+.+++.+..-.++|.+|.. .+...    .+.+. ....+...++.++.
T Consensus        66 ~vi~~a~~~~~~--~---------~~~~~l~~a~~~~~~~~~~~v~~Ss~-~vyg~~~~~~~~E~-~~~~p~~~Y~~sK~  132 (286)
T 3ius_A           66 HLLISTAPDSGG--D---------PVLAALGDQIAARAAQFRWVGYLSTT-AVYGDHDGAWVDET-TPLTPTAARGRWRV  132 (286)
T ss_dssp             EEEECCCCBTTB--C---------HHHHHHHHHHHHTGGGCSEEEEEEEG-GGGCCCTTCEECTT-SCCCCCSHHHHHHH
T ss_pred             EEEECCCccccc--c---------HHHHHHHHHHHhhcCCceEEEEeecc-eecCCCCCCCcCCC-CCCCCCCHHHHHHH
Confidence            999999865321  1         22356777777642111256665542 21100    00000 00111123444444


Q ss_pred             hHHHHHHHHHHHc-CCCCCCeEEEEEecCCC
Q 022227          160 DHNRALGQISEKL-NVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       160 d~~R~~~~la~~l-~v~~~~V~~~~V~G~hg  189 (300)
                      ..++    +.+.+ +++..-++...|+|...
T Consensus       133 ~~E~----~~~~~~~~~~~ilRp~~v~G~~~  159 (286)
T 3ius_A          133 MAEQ----QWQAVPNLPLHVFRLAGIYGPGR  159 (286)
T ss_dssp             HHHH----HHHHSTTCCEEEEEECEEEBTTB
T ss_pred             HHHH----HHHhhcCCCEEEEeccceECCCc
Confidence            4433    33344 88888888888889754

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=98.24  E-value=1.3e-05  Score=71.01  Aligned_cols=160  Identities=14%  Similarity=0.082  Sum_probs=90.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc----------hhhhhhhhhhhhhhccC---CcccEE
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA----------AEALNGVKMELVDAAFP---LLKGVV   70 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~----------~~~l~g~~~dl~~~~~~---~~~~v~   70 (300)
                      +.+++.||||+|.||.+++..|+..|.       +|+++|++.+          .+.++....++......   ...++.
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~   81 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA-------DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVR   81 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTT
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-------eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCC
Confidence            457899999999999999999999875       7999987521          12222222222211100   000100


Q ss_pred             EeCChhhh-------cCCCcEEEEeCCCCCCC-CC---cHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH
Q 022227           71 ATTDAVEA-------CTGVNIAVMVGGFPRKE-GM---ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL  139 (300)
Q Consensus        71 ~~~~~~~a-------~~~aDvVi~~ag~~~~~-g~---~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~  139 (300)
                      -..+..+.       +...|++|+.||..... ..   +-...+..|+.....+.+.+..+-.+..++|++|+.......
T Consensus        82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~  161 (287)
T 3pxx_A           82 DRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAA  161 (287)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccc
Confidence            00011122       23789999999975422 12   224567889998888888887764334577877764432221


Q ss_pred             HHHHHCCCC-----CCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          140 ILKEFAPSI-----PAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       140 ~~~~~~~~~-----p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                         ...+..     |....|+.++.-...+.+.+|++++
T Consensus       162 ---~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~  197 (287)
T 3pxx_A          162 ---AQPPGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLA  197 (287)
T ss_dssp             ---HCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ---cccccccccCCCccchHHHHHHHHHHHHHHHHHHHh
Confidence               000000     1011245555555667777787773

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.23  E-value=1.8e-05  Score=74.86  Aligned_cols=76  Identities=20%  Similarity=0.238  Sum_probs=52.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhh--------hhhhhccCCcccEEEeCCh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM--------ELVDAAFPLLKGVVATTDA   75 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~--------dl~~~~~~~~~~v~~~~~~   75 (300)
                      +.|||+|+| +|.+|..++..|++ |.       +|+++|+++  ++++....        ++.+.......++..+++.
T Consensus        35 ~~mkIaVIG-lG~mG~~lA~~La~-G~-------~V~~~D~~~--~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~  103 (432)
T 3pid_A           35 EFMKITISG-TGYVGLSNGVLIAQ-NH-------EVVALDIVQ--AKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDK  103 (432)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHT-TS-------EEEEECSCH--HHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCH
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHc-CC-------eEEEEecCH--HHhhHHhccCCccccccHHHHHhhccCCeEEEcCH
Confidence            457999999 79999999998886 64       899999974  44432211        0110000001357788898


Q ss_pred             hhhcCCCcEEEEeCC
Q 022227           76 VEACTGVNIAVMVGG   90 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag   90 (300)
                      .+++++||+||++..
T Consensus       104 ~ea~~~aDvViiaVP  118 (432)
T 3pid_A          104 HDAYRNADYVIIATP  118 (432)
T ss_dssp             HHHHTTCSEEEECCC
T ss_pred             HHHHhCCCEEEEeCC
Confidence            899999999999853

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=98.22  E-value=6.6e-06  Score=71.75  Aligned_cols=149  Identities=15%  Similarity=0.089  Sum_probs=84.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh--
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE--   77 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~--   77 (300)
                      ++.+++.||||+|.+|.+++..|++.|.       +|++.|+++. ++++.   ++......   ...++.-..+..+  
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~-~~~~~---~~~~~~~~~~~~~~Dv~~~~~v~~~~   73 (249)
T 2ew8_A            5 LKDKLAVITGGANGIGRAIAERFAVEGA-------DIAIADLVPA-PEAEA---AIRNLGRRVLTVKCDVSQPGDVEAFG   73 (249)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCC-HHHHH---HHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEcCCch-hHHHH---HHHhcCCcEEEEEeecCCHHHHHHHH
Confidence            3457899999999999999999998875       7899998641 23321   12111000   0000000001111  


Q ss_pred             -----hcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHH----HHHHHhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           78 -----ACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKA----QASALEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        78 -----a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~----i~~~i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                           .+...|++|+.||......   .+.   ...+..|+.....    +.+.+++..  ..++|++|+....      
T Consensus        74 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~------  145 (249)
T 2ew8_A           74 KQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG--WGRIINLTSTTYW------  145 (249)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGG------
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CeEEEEEcchhhc------
Confidence                 2457899999999754221   222   3456677766444    444465553  3467877764431      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                         .+.|....|+.++.-...+.+.+++++.
T Consensus       146 ---~~~~~~~~Y~asK~a~~~~~~~la~e~~  173 (249)
T 2ew8_A          146 ---LKIEAYTHYISTKAANIGFTRALASDLG  173 (249)
T ss_dssp             ---SCCSSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ---cCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence               1223223455566666677777777764

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=98.22  E-value=4.5e-05  Score=67.12  Aligned_cols=156  Identities=16%  Similarity=0.118  Sum_probs=91.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-CcccEEEe-CC------
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVAT-TD------   74 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-~~~~v~~~-~~------   74 (300)
                      .+.+++.||||+|.+|.+++..|++.|.       +|++.|+++  +.++....++...... ....+... ++      
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~   78 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGA-------NVLINGRRE--ENVNETIKEIRAQYPDAILQPVVADLGTEQGCQD   78 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHH
Confidence            3457899999999999999999999875       799999863  4444333333321100 00000000 01      


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           75 AVEACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                      ..+.+...|++|+.||......   .+.   ...+..|+..    .+.+.+.+.+..  ..++|++|+....        
T Consensus        79 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~--------  148 (267)
T 3t4x_A           79 VIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERK--EGRVIFIASEAAI--------  148 (267)
T ss_dssp             HHHHCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--EEEEEEECCGGGT--------
T ss_pred             HHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCEEEEEcchhhc--------
Confidence            1223457899999999754221   222   2346777766    455555555443  3567887765431        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                       .+.|....|+.++.-...+.+.+|.+++  +..|+
T Consensus       149 -~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~  181 (267)
T 3t4x_A          149 -MPSQEMAHYSATKTMQLSLSRSLAELTT--GTNVT  181 (267)
T ss_dssp             -SCCTTCHHHHHHHHHHHHHHHHHHHHTT--TSEEE
T ss_pred             -cCCCcchHHHHHHHHHHHHHHHHHHHhC--CCCeE
Confidence             1223223456666666677788888775  34454

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=98.22  E-value=8.8e-07  Score=77.51  Aligned_cols=152  Identities=11%  Similarity=0.091  Sum_probs=83.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhhc-
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC-   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a~-   79 (300)
                      +.++|.||||+|++|++++..|+..|.       +|++++++. .+.++....++......   ...++.-..+..+.+ 
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-------~V~~~~r~~-~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~   77 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKA-------KVVVNYRSK-EDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQ   77 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEcCCC-hHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence            457899999999999999999998875       788888721 23333222223211100   000000000112222 


Q ss_pred             ------CCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           80 ------TGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        80 ------~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                            .+.|+||++||.....   ..+   -.+.+..|+.....+.+.    +.+... ..++|++|+....       
T Consensus        78 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~~iv~isS~~~~-------  149 (261)
T 1gee_A           78 SAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDI-KGTVINMSSVHEK-------  149 (261)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-CCEEEEECCGGGT-------
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC-CCEEEEeCCHHhc-------
Confidence                  3789999999975421   112   234566676665555544    433321 2467777764321       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                        .+.|....++.++.-...+.+.+++++.
T Consensus       150 --~~~~~~~~Y~~sK~a~~~~~~~la~e~~  177 (261)
T 1gee_A          150 --IPWPLFVHYAASKGGMKLMTETLALEYA  177 (261)
T ss_dssp             --SCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             --CCCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence              1223233455566555566666777663

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=98.22  E-value=3.9e-06  Score=73.82  Aligned_cols=156  Identities=19%  Similarity=0.171  Sum_probs=91.0

Q ss_pred             CCcEEEEEcCC--ChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh
Q 022227            4 EPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA   78 (300)
Q Consensus         4 ~~~kV~IiGAa--G~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a   78 (300)
                      +.++|.||||+  |+||.+++..|++.|.       +|++.|+++   +++....++......   ...++.-..+..+.
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-------~V~~~~r~~---~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~   77 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGA-------ELAFTYQND---KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTM   77 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-------EEEEEESST---TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-------EEEEEcCcH---HHHHHHHHHHHhcCCcEEEEccCCCHHHHHHH
Confidence            44689999998  9999999999998875       789998863   111111222211000   00010000011122


Q ss_pred             c-------CCCcEEEEeCCCCCC-----C--C-Cc---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH
Q 022227           79 C-------TGVNIAVMVGGFPRK-----E--G-ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        79 ~-------~~aDvVi~~ag~~~~-----~--g-~~---r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                      +       ...|++|+.||....     +  . .+   -...+..|+.....+.+.+.++-.+..++|++|+....    
T Consensus        78 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~----  153 (265)
T 1qsg_A           78 FAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE----  153 (265)
T ss_dssp             HHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT----
T ss_pred             HHHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhc----
Confidence            2       267999999997542     1  1 22   23467789998888888887763223467877764321    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                           .+.|....|+.++.-...+.+.+++++.  +..|+
T Consensus       154 -----~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~  186 (265)
T 1qsg_A          154 -----RAIPNYNVMGLAKASLEANVRYMANAMG--PEGVR  186 (265)
T ss_dssp             -----SBCTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEE
T ss_pred             -----cCCCCchHHHHHHHHHHHHHHHHHHHhh--hcCeE
Confidence                 1223233456666666677777888774  33454

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=98.21  E-value=1.4e-06  Score=77.89  Aligned_cols=96  Identities=15%  Similarity=0.090  Sum_probs=57.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC-c---h-hhhhhhhhhhhhhccC-CcccEEEeCChhhh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-A---A-EALNGVKMELVDAAFP-LLKGVVATTDAVEA   78 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~-~---~-~~l~g~~~dl~~~~~~-~~~~v~~~~~~~~a   78 (300)
                      ++||+|+||+|++|++++..|+..|.       +++.++++. .   . ++++.. .++...... ...++.-..++.++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~R~~~~~~~~~~~~~~~-~~l~~~~v~~v~~D~~d~~~l~~~   73 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN-------PTYALVRKTITAANPETKEELI-DNYQSLGVILLEGDINDHETLVKA   73 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC-------CEEEEECCSCCSSCHHHHHHHH-HHHHHTTCEEEECCTTCHHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC-------cEEEEECCCcccCChHHHHHHH-HHHHhCCCEEEEeCCCCHHHHHHH
Confidence            36899999999999999999998764       577787753 0   1 222111 112111100 00111111235678


Q ss_pred             cCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhc
Q 022227           79 CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA  121 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~  121 (300)
                      ++++|+||++++...             +...+++++++++.+
T Consensus        74 ~~~~d~vi~~a~~~~-------------~~~~~~l~~aa~~~g  103 (307)
T 2gas_A           74 IKQVDIVICAAGRLL-------------IEDQVKIIKAIKEAG  103 (307)
T ss_dssp             HTTCSEEEECSSSSC-------------GGGHHHHHHHHHHHC
T ss_pred             HhCCCEEEECCcccc-------------cccHHHHHHHHHhcC
Confidence            899999999998643             123356677777764

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=98.21  E-value=5.2e-06  Score=73.11  Aligned_cols=150  Identities=15%  Similarity=0.123  Sum_probs=83.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc-cCCc----ccEEEeCChhhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FPLL----KGVVATTDAVEA   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~-~~~~----~~v~~~~~~~~a   78 (300)
                      +.+++.||||+|.+|.+++..|++.|.       +|+++|+++  ++++....++.... ....    .++.-..+..++
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~   82 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA-------KLSLVDVSS--EGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAY   82 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHH
Confidence            456899999999999999999998875       789999863  44443333332210 0000    000000011222


Q ss_pred             -------cCCCcEEEEeCCCCCC--C--CCcH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHH
Q 022227           79 -------CTGVNIAVMVGGFPRK--E--GMER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        79 -------~~~aDvVi~~ag~~~~--~--g~~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                             +...|++|+.||....  +  ..+.   ...+..|+..    .+.+.+.+++...  .++|++|+....    
T Consensus        83 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--g~iv~isS~~~~----  156 (267)
T 1iy8_A           83 VTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGS--GMVVNTASVGGI----  156 (267)
T ss_dssp             HHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEECCGGGT----
T ss_pred             HHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--CEEEEEcchhhc----
Confidence                   2368999999997542  1  1122   3345667644    4455666655532  467887765431    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                           .+.|....|+.++.-...+.+.++.++.
T Consensus       157 -----~~~~~~~~Y~asK~a~~~~~~~la~e~~  184 (267)
T 1iy8_A          157 -----RGIGNQSGYAAAKHGVVGLTRNSAVEYG  184 (267)
T ss_dssp             -----SBCSSBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             -----cCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence                 1223222345555555566666777653

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=98.21  E-value=2.4e-06  Score=77.64  Aligned_cols=151  Identities=15%  Similarity=0.075  Sum_probs=82.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-----CCcccEEEeCChhhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-----PLLKGVVATTDAVEA   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-----~~~~~v~~~~~~~~a   78 (300)
                      +.++|+||||+|+||.+++..|++.|.       .|++.|+++  ++++....++.....     ....+++-..+..++
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~-------~Vv~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~   77 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC-------KVAIADIRQ--DSIDKALATLEAEGSGPEVMGVQLDVASREGFKMA   77 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHH
Confidence            346899999999999999999999875       799999863  444433333322110     000011000111222


Q ss_pred             c-------CCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHHHHHHHHHHhhhc--------CCCeEEEEecCchhhH
Q 022227           79 C-------TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHA--------APNCKVLVVANPANTN  137 (300)
Q Consensus        79 ~-------~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~~--------~~~~~viv~sNP~~~~  137 (300)
                      +       ...|++|+.||......   .+   -.+++..|+.....+.+.+...-        .+...||++|+-... 
T Consensus        78 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~-  156 (319)
T 3ioy_A           78 ADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAF-  156 (319)
T ss_dssp             HHHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGT-
T ss_pred             HHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccc-
Confidence            2       36799999999753211   12   23467777666655555443321        113467777764431 


Q ss_pred             HHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          138 ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       138 ~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                              .+.|....|+.++.-...+...++.++
T Consensus       157 --------~~~~~~~~Y~aSKaal~~~~~~la~e~  183 (319)
T 3ioy_A          157 --------LAAGSPGIYNTTKFAVRGLSESLHYSL  183 (319)
T ss_dssp             --------CCCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------cCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence                    122322234555554444555555555

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=98.21  E-value=2.7e-06  Score=75.24  Aligned_cols=154  Identities=18%  Similarity=0.125  Sum_probs=85.9

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE   77 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~   77 (300)
                      |+.+.++|.||||+|.+|.+++..|++.|.       ++++.+.+. .+.++....++......   ...++.-..+..+
T Consensus        25 m~l~~k~vlITGas~gIG~~la~~l~~~G~-------~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   96 (271)
T 4iin_A           25 MQFTGKNVLITGASKGIGAEIAKTLASMGL-------KVWINYRSN-AEVADALKNELEEKGYKAAVIKFDAASESDFIE   96 (271)
T ss_dssp             CCCSCCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence            444567899999999999999999999875       788888753 23333222222221100   0000000001122


Q ss_pred             h-------cCCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHHHHH----HHHHHhhhcCCCeEEEEecCchhhHHHH
Q 022227           78 A-------CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKA----QASALEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        78 a-------~~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i~~~----i~~~i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                      .       +...|++|+.||......   .+   -...+..|+.....    +.+.+++..  ..++|++|+....    
T Consensus        97 ~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~----  170 (271)
T 4iin_A           97 AIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSR--FGSVVNVASIIGE----  170 (271)
T ss_dssp             HHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHH----
T ss_pred             HHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC--CCEEEEEechhhc----
Confidence            2       237899999999854321   12   23456667655544    444444443  2467777764321    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                         .  +.|....++.++.-...+.+.+++++.
T Consensus       171 ---~--~~~~~~~Y~asK~a~~~~~~~la~e~~  198 (271)
T 4iin_A          171 ---R--GNMGQTNYSASKGGMIAMSKSFAYEGA  198 (271)
T ss_dssp             ---H--CCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---C--CCCCchHhHHHHHHHHHHHHHHHHHHH
Confidence               1  223233456666666667777777764

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=98.21  E-value=9.4e-07  Score=79.00  Aligned_cols=99  Identities=16%  Similarity=0.155  Sum_probs=57.9

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc----hhhhhhhhhhhhhhccC-CcccEEEeCCh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA----AEALNGVKMELVDAAFP-LLKGVVATTDA   75 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~----~~~l~g~~~dl~~~~~~-~~~~v~~~~~~   75 (300)
                      |++ ++||+|+||+|++|++++..|+..|.       +++.++++..    .++++ ...++...... ...++.-..++
T Consensus         1 M~~-~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~l~R~~~~~~~~~~~~-~~~~l~~~~v~~v~~D~~d~~~l   71 (308)
T 1qyc_A            1 MGS-RSRILLIGATGYIGRHVAKASLDLGH-------PTFLLVRESTASSNSEKAQ-LLESFKASGANIVHGSIDDHASL   71 (308)
T ss_dssp             -CC-CCCEEEESTTSTTHHHHHHHHHHTTC-------CEEEECCCCCTTTTHHHHH-HHHHHHTTTCEEECCCTTCHHHH
T ss_pred             CCC-CCEEEEEcCCcHHHHHHHHHHHhCCC-------CEEEEECCcccccCHHHHH-HHHHHHhCCCEEEEeccCCHHHH
Confidence            542 46899999999999999999998763       5777877532    11111 00111111000 00111111235


Q ss_pred             hhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhc
Q 022227           76 VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA  121 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~  121 (300)
                      .++++++|+||++++...             ....+++++++++.+
T Consensus        72 ~~~~~~~d~vi~~a~~~~-------------~~~~~~l~~aa~~~g  104 (308)
T 1qyc_A           72 VEAVKNVDVVISTVGSLQ-------------IESQVNIIKAIKEVG  104 (308)
T ss_dssp             HHHHHTCSEEEECCCGGG-------------SGGGHHHHHHHHHHC
T ss_pred             HHHHcCCCEEEECCcchh-------------hhhHHHHHHHHHhcC
Confidence            678899999999987542             122356777777765

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=98.21  E-value=1.1e-05  Score=72.31  Aligned_cols=153  Identities=14%  Similarity=0.034  Sum_probs=88.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV----   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~----   76 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|++.|.+.. +..+.....+......   ...++.-..+..    
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~-------~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~  117 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA-------NIAIAYLDEE-GDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQ  117 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCH-HHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCch-HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence            346899999999999999999999875       7899988642 1222111111111000   000000000111    


Q ss_pred             ---hhcCCCcEEEEeCCCCCCCC----Cc---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           77 ---EACTGVNIAVMVGGFPRKEG----ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        77 ---~a~~~aDvVi~~ag~~~~~g----~~---r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                         +.+...|++|+.||......    .+   -...+..|+.....+.+.+.++-.+..++|++|+-...       .  
T Consensus       118 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-------~--  188 (291)
T 3ijr_A          118 ETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAY-------E--  188 (291)
T ss_dssp             HHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHH-------H--
T ss_pred             HHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhc-------C--
Confidence               22347899999998753211    12   23467889988888888887764334467777764431       1  


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      +.|....|+.++.-...+.+.+|.+++
T Consensus       189 ~~~~~~~Y~asKaa~~~l~~~la~e~~  215 (291)
T 3ijr_A          189 GNETLIDYSATKGAIVAFTRSLSQSLV  215 (291)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHh
Confidence            223222355566666677777777764

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=98.21  E-value=8.4e-06  Score=71.49  Aligned_cols=155  Identities=15%  Similarity=0.094  Sum_probs=90.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh---
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE---   77 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~---   77 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|++.|+++  ++++....++......   ...++.-..+..+   
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~   81 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-------SVVVTDLKS--EGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIK   81 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC-------EEEEEESSH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence            456899999999999999999999875       789999863  4444333333321100   0001100001112   


Q ss_pred             ----hcCCCcEEEEeCCCCCCC--CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           78 ----ACTGVNIAVMVGGFPRKE--GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        78 ----a~~~aDvVi~~ag~~~~~--g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                          .+...|++|+.||.....  ..+.   ...+..|+.....+.+.+    .+..  ..++|++|+....        
T Consensus        82 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~--------  151 (256)
T 3gaf_A           82 AALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAG--GGAILNISSMAGE--------  151 (256)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGT--------
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEcCHHHc--------
Confidence                233789999999975422  2222   234667766666665554    4432  3578888765431        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                       .+.|....|+.++.-...+.+.++++++  +..|+
T Consensus       152 -~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~  184 (256)
T 3gaf_A          152 -NTNVRMASYGSSKAAVNHLTRNIAFDVG--PMGIR  184 (256)
T ss_dssp             -CCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             -CCCCCchHHHHHHHHHHHHHHHHHHHHh--hhCcE
Confidence             1233223456666666677777887764  33454

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=98.21  E-value=6.5e-06  Score=72.74  Aligned_cols=145  Identities=17%  Similarity=0.177  Sum_probs=84.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhh--------hhhhhhhccCCcccEEEeCChh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGV--------KMELVDAAFPLLKGVVATTDAV   76 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~--------~~dl~~~~~~~~~~v~~~~~~~   76 (300)
                      .+++.||||+|.||.+++..|++.|.       +|++.|++.  ++++..        ..|+.+....  ..  ......
T Consensus        16 ~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~Dv~d~~~v--~~--~~~~~~   82 (266)
T 3p19_A           16 KKLVVITGASSGIGEAIARRFSEEGH-------PLLLLARRV--ERLKALNLPNTLCAQVDVTDKYTF--DT--AITRAE   82 (266)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-------CEEEEESCH--HHHHTTCCTTEEEEECCTTCHHHH--HH--HHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHhhcCCceEEEecCCCHHHH--HH--HHHHHH
Confidence            45799999999999999999999875       688998863  333221        1122221100  00  000112


Q ss_pred             hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHH----HHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           77 EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKA----QASALEQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~----i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                      +.+...|++|+.||.....   ..+.   ...+..|+.....    +.+.+.+..  ..++|++|+....         .
T Consensus        83 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~IV~isS~~~~---------~  151 (266)
T 3p19_A           83 KIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARN--CGTIINISSIAGK---------K  151 (266)
T ss_dssp             HHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGT---------S
T ss_pred             HHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEcChhhC---------C
Confidence            2234789999999975422   1222   2356677666555    444455543  2467887764431         2


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      +.|....|+.++.-...+.+.++.+++
T Consensus       152 ~~~~~~~Y~asK~a~~~~~~~la~e~~  178 (266)
T 3p19_A          152 TFPDHAAYCGTKFAVHAISENVREEVA  178 (266)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHhc
Confidence            233333456666666667777777764

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=98.21  E-value=3.9e-06  Score=72.96  Aligned_cols=143  Identities=19%  Similarity=0.180  Sum_probs=88.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHh-cccCCCCCCeEEEEEecCCc--hhhhhhhhhhhhhhccCCcccEEEeCChhhh--
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPA--AEALNGVKMELVDAAFPLLKGVVATTDAVEA--   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~-~~~~~~~~~~~l~L~D~~~~--~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a--   78 (300)
                      +.+++.||||+|.||.+++..|++ .+.       .+++.|+++.  .+.+.....|+.+..           +..+.  
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~-------~v~~~~~~~~~~~~~~~~~~~Dv~~~~-----------~v~~~~~   64 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNH-------TVINIDIQQSFSAENLKFIKADLTKQQ-----------DITNVLD   64 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTE-------EEEEEESSCCCCCTTEEEEECCTTCHH-----------HHHHHHH
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCc-------EEEEeccccccccccceEEecCcCCHH-----------HHHHHHH
Confidence            456799999999999999999987 553       6888887642  112222334554432           11111  


Q ss_pred             ---cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCC
Q 022227           79 ---CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIP  149 (300)
Q Consensus        79 ---~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p  149 (300)
                         ....|++|+.||.....   ..+.   ...+..|+.....+.+.+.+.-.+..++|++|+....         .+.|
T Consensus        65 ~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~---------~~~~  135 (244)
T 4e4y_A           65 IIKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCF---------IAKP  135 (244)
T ss_dssp             HTTTCCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGT---------CCCT
T ss_pred             HHHhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHc---------cCCC
Confidence               23789999999975321   2222   3457789888888888877654333467777754431         1233


Q ss_pred             CCcEEeeehhhHHHHHHHHHHHcC
Q 022227          150 AKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       150 ~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ..-.|+.++.-...+.+.+++++.
T Consensus       136 ~~~~Y~asKaa~~~~~~~la~e~~  159 (244)
T 4e4y_A          136 NSFAYTLSKGAIAQMTKSLALDLA  159 (244)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHH
Confidence            222456666666677777777664

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=98.21  E-value=5.9e-06  Score=72.48  Aligned_cols=151  Identities=11%  Similarity=0.067  Sum_probs=85.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhh-hhhhhhhhhhh-ccC---CcccEEEeCChhh
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA-LNGVKMELVDA-AFP---LLKGVVATTDAVE   77 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~-l~g~~~dl~~~-~~~---~~~~v~~~~~~~~   77 (300)
                      ++.++|.||||+|.+|.+++..|++.|.       +|++.|+++  +. ++....++... ...   ...++.-..+..+
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   72 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGA-------DIVLNGFGD--AAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRG   72 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEECCSC--HHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCC-------EEEEEeCCc--chHHHHHHHHHHhccCCcEEEEECCCCCHHHHHH
Confidence            3456899999999999999999999875       789999864  23 33222223211 000   0001100001122


Q ss_pred             h-------cCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEecCchhhHHHH
Q 022227           78 A-------CTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        78 a-------~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i----~~~i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                      +       +...|++|+.||......   .+.   ...+..|+.....+    .+.+++..  ..++|++|+....    
T Consensus        73 ~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~----  146 (260)
T 1x1t_A           73 LVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG--FGRIINIASAHGL----  146 (260)
T ss_dssp             HHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT----
T ss_pred             HHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCEEEEECcHHhC----
Confidence            2       237899999999754211   122   34566776644444    44444443  2468888765431    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                           .+.|....|+.++.-...+.+.++.++.
T Consensus       147 -----~~~~~~~~Y~~sK~a~~~~~~~la~e~~  174 (260)
T 1x1t_A          147 -----VASANKSAYVAAKHGVVGFTKVTALETA  174 (260)
T ss_dssp             -----SCCTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -----cCCCCCchHHHHHHHHHHHHHHHHHHhc
Confidence                 1223223455566666667777777764

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=98.20  E-value=1.3e-06  Score=76.83  Aligned_cols=151  Identities=13%  Similarity=0.123  Sum_probs=87.5

Q ss_pred             CCCcEEEEEcCC--ChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh
Q 022227            3 KEPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE   77 (300)
Q Consensus         3 ~~~~kV~IiGAa--G~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~   77 (300)
                      ++.+++.||||+  |.||.+++..|++.|.       +|++.|+++  + ++....++......   ...++.-..+..+
T Consensus         6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-------~V~~~~r~~--~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~   75 (261)
T 2wyu_A            6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA-------EVALSYQAE--R-LRPEAEKLAEALGGALLFRADVTQDEELDA   75 (261)
T ss_dssp             CTTCEEEEESCCSSSSHHHHHHHHHHHHTC-------EEEEEESCG--G-GHHHHHHHHHHTTCCEEEECCTTCHHHHHH
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCC-------EEEEEcCCH--H-HHHHHHHHHHhcCCcEEEECCCCCHHHHHH
Confidence            445789999998  9999999999998875       788998864  1 11111122211000   0001000011122


Q ss_pred             hc-------CCCcEEEEeCCCCCC-----C--CCc---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH
Q 022227           78 AC-------TGVNIAVMVGGFPRK-----E--GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        78 a~-------~~aDvVi~~ag~~~~-----~--g~~---r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                      ++       ...|++|+.||....     +  ..+   -...+..|+.....+.+.+.+.-.+..++|++|+....    
T Consensus        76 ~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~----  151 (261)
T 2wyu_A           76 LFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE----  151 (261)
T ss_dssp             HHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT----
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEeccccc----
Confidence            22       368999999997532     1  122   23467789888888888887653223467777753321    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                           .+.|....|+.++.-...+.+.+++++
T Consensus       152 -----~~~~~~~~Y~asK~a~~~~~~~la~e~  178 (261)
T 2wyu_A          152 -----KVVPKYNVMAIAKAALEASVRYLAYEL  178 (261)
T ss_dssp             -----SBCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----CCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence                 122322245556666666777777776

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=98.20  E-value=1e-06  Score=79.43  Aligned_cols=96  Identities=15%  Similarity=0.155  Sum_probs=58.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC-c---hhhhhhhhhhhhhhccC-CcccEEEeCChhhhc
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-A---AEALNGVKMELVDAAFP-LLKGVVATTDAVEAC   79 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~-~---~~~l~g~~~dl~~~~~~-~~~~v~~~~~~~~a~   79 (300)
                      +++|+|+||+|++|++++..|+..|.       +|++++++. +   .++.+. ..++...... ...++.-..++.+++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~R~~~~~~~~~~~~~-l~~~~~~~v~~v~~D~~d~~~l~~a~   75 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSH-------PTFIYARPLTPDSTPSSVQL-REEFRSMGVTIIEGEMEEHEKMVSVL   75 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC-------CEEEEECCCCTTCCHHHHHH-HHHHHHTTCEEEECCTTCHHHHHHHH
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCC-------cEEEEECCcccccChHHHHH-HHHhhcCCcEEEEecCCCHHHHHHHH
Confidence            46899999999999999999998764       588888763 1   112111 0111111100 001111112456789


Q ss_pred             CCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhc
Q 022227           80 TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA  121 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~  121 (300)
                      +++|+||++++...             ....+++++++.+.+
T Consensus        76 ~~~d~vi~~a~~~~-------------~~~~~~l~~aa~~~g  104 (321)
T 3c1o_A           76 KQVDIVISALPFPM-------------ISSQIHIINAIKAAG  104 (321)
T ss_dssp             TTCSEEEECCCGGG-------------SGGGHHHHHHHHHHC
T ss_pred             cCCCEEEECCCccc-------------hhhHHHHHHHHHHhC
Confidence            99999999987542             233456777777764

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=98.20  E-value=8.3e-06  Score=72.72  Aligned_cols=158  Identities=14%  Similarity=0.138  Sum_probs=88.4

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch-h----hhhhhhhhhhhhccC---CcccEEEe
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-E----ALNGVKMELVDAAFP---LLKGVVAT   72 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~-~----~l~g~~~dl~~~~~~---~~~~v~~~   72 (300)
                      |+++.+++.||||+|.||.+++..|++.|.       +|++.|++... +    .++....++......   ...+++-.
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   77 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRVAADGA-------NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDG   77 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHTTTC-------EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCH
Confidence            555667899999999999999999998875       78999986421 0    122222222211100   00000000


Q ss_pred             CChh-------hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEecCchhhH
Q 022227           73 TDAV-------EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTN  137 (300)
Q Consensus        73 ~~~~-------~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~--~~~~viv~sNP~~~~  137 (300)
                      .+..       +.+...|++|+.||.....   ..+.   ...+..|+.....+.+.+.+.-.  +..++|++|+.....
T Consensus        78 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~  157 (285)
T 3sc4_A           78 DAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLE  157 (285)
T ss_dssp             HHHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCS
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhcc
Confidence            0111       2234789999999975321   2222   34566888888888777665421  134788887644211


Q ss_pred             HHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          138 ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       138 ~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                              +..+....|+.++.-...+.+.+|++++
T Consensus       158 --------~~~~~~~~Y~asKaal~~~~~~la~e~~  185 (285)
T 3sc4_A          158 --------PKWLRPTPYMMAKYGMTLCALGIAEELR  185 (285)
T ss_dssp             --------GGGSCSHHHHHHHHHHHHHHHHHHHHTG
T ss_pred             --------CCCCCCchHHHHHHHHHHHHHHHHHHhc
Confidence                    0112112345555555566777777764

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=98.19  E-value=2.7e-05  Score=69.29  Aligned_cols=152  Identities=12%  Similarity=0.136  Sum_probs=87.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC----cccEEEeCChh--
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL----LKGVVATTDAV--   76 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~----~~~v~~~~~~~--   76 (300)
                      ++.+++.||||+|.||.+++..|++.|.       +|++.|.+. .+.++....++.......    ..++.-..+..  
T Consensus        23 l~~k~~lVTGas~GIG~~ia~~la~~G~-------~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~   94 (281)
T 3v2h_A           23 MMTKTAVITGSTSGIGLAIARTLAKAGA-------NIVLNGFGA-PDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADM   94 (281)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEECCCC-HHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCC-hHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHH
Confidence            3456899999999999999999999875       789998842 233433333332211000    00110001111  


Q ss_pred             -----hhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHH
Q 022227           77 -----EACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        77 -----~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                           +.+...|++|+.||......   .+.   ...+..|+.....+.+.+    .+..  ..++|++|+....     
T Consensus        95 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~-----  167 (281)
T 3v2h_A           95 MAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKG--WGRIINIASAHGL-----  167 (281)
T ss_dssp             HHHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT-----
T ss_pred             HHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECCcccc-----
Confidence                 22347899999999754221   122   335667766655555554    4443  3468888764431     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                          .+.|....|+.++.-...+.+.+|.+++
T Consensus       168 ----~~~~~~~~Y~asKaa~~~l~~~la~e~~  195 (281)
T 3v2h_A          168 ----VASPFKSAYVAAKHGIMGLTKTVALEVA  195 (281)
T ss_dssp             ----SCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ----cCCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence                1223223456666666677777777764

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=98.19  E-value=8.3e-06  Score=71.65  Aligned_cols=155  Identities=14%  Similarity=0.073  Sum_probs=92.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEE-ecCCchhhhhhhhhhhhhhccCC---cccEEEeCChhhh-
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAVEA-   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~-D~~~~~~~l~g~~~dl~~~~~~~---~~~v~~~~~~~~a-   78 (300)
                      +.+++.||||+|.||.+++..|+..|.       ++++. +.+.  +.++....++.......   ..+++-..+..+. 
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~-------~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~   77 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA-------NVVLTYNGAA--EGAATAVAEIEKLGRSALAIKADLTNAAEVEAAI   77 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECSSC--HHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCCH--HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence            457899999999999999999999875       67777 4432  33332222332211000   0011000111222 


Q ss_pred             ------cCCCcEEEEeCCCCC--CC--CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHC
Q 022227           79 ------CTGVNIAVMVGGFPR--KE--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        79 ------~~~aDvVi~~ag~~~--~~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                            +...|++|+.||...  .+  ..+.   ...+..|+.....+.+.+.+.-.+..++|++|+....       . 
T Consensus        78 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~-------~-  149 (259)
T 3edm_A           78 SAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGR-------D-  149 (259)
T ss_dssp             HHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHH-------H-
T ss_pred             HHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhc-------c-
Confidence                  237899999998642  11  2222   3457789888888888887764323467777764421       1 


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcCCC
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLNVQ  175 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~v~  175 (300)
                      .+.|....|+.++.-...+.+.+|.+++-.
T Consensus       150 ~~~~~~~~Y~asKaa~~~l~~~la~e~~~~  179 (259)
T 3edm_A          150 GGGPGALAYATSKGAVMTFTRGLAKEVGPK  179 (259)
T ss_dssp             CCSTTCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            223333346667777777888888888643

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=98.19  E-value=4.7e-06  Score=72.65  Aligned_cols=151  Identities=17%  Similarity=0.160  Sum_probs=85.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh---hhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN---GVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~---g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      +.++|.||||+|.+|..++..|++.|.       +|++.|+++  ++++   +...|+.+....  ..+  .....+.+.
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~D~~~~~~~--~~~--~~~~~~~~g   80 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH-------KVAVTHRGS--GAPKGLFGVEVDVTDSDAV--DRA--FTAVEEHQG   80 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSS--CCCTTSEEEECCTTCHHHH--HHH--HHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHhcCeeccCCCHHHH--HHH--HHHHHHHcC
Confidence            456899999999999999999998874       788888864  2222   223444432200  000  001122345


Q ss_pred             CCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEecCchhhHHHHHHHHCCCCCC
Q 022227           81 GVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILKEFAPSIPA  150 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~----~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~  150 (300)
                      ..|++|+.||.....   ..+   -...+..|+.....+.+.+.    +..  ..++|++|+.....         +.|.
T Consensus        81 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~---------~~~~  149 (247)
T 1uzm_A           81 PVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK--FGRMIFIGSVSGLW---------GIGN  149 (247)
T ss_dssp             SCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCCCC--------------C
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCEEEEECCHhhcc---------CCCC
Confidence            789999999975421   122   23456677766666555543    332  34678777654311         1122


Q ss_pred             CcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          151 KNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       151 ~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      ...|+.++.-...+.+.+++++.  +..|+
T Consensus       150 ~~~Y~~sK~a~~~~~~~la~e~~--~~gi~  177 (247)
T 1uzm_A          150 QANYAASKAGVIGMARSIARELS--KANVT  177 (247)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             ChhHHHHHHHHHHHHHHHHHHhh--hcCcE
Confidence            22345555555566667777663  33454

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.18  E-value=3.8e-06  Score=78.98  Aligned_cols=121  Identities=12%  Similarity=0.170  Sum_probs=71.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhh--------hhccCCcccEEEeCChhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELV--------DAAFPLLKGVVATTDAVE   77 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~--------~~~~~~~~~v~~~~~~~~   77 (300)
                      |||+|+| +|.||..++..|++ |.       +++++|+++  ++++.......        +.......++..+++..+
T Consensus         1 MkI~VIG-~G~vG~~~A~~La~-G~-------~V~~~d~~~--~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~   69 (402)
T 1dlj_A            1 MKIAVAG-SGYVGLSLGVLLSL-QN-------EVTIVDILP--SKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKA   69 (402)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHTT-TS-------EEEEECSCH--HHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHH
T ss_pred             CEEEEEC-CCHHHHHHHHHHhC-CC-------EEEEEECCH--HHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHH
Confidence            4899999 79999999999987 63       799999863  44432211100        000000124566777778


Q ss_pred             hcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEE-ecCchhhHHHHHHH
Q 022227           78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLV-VANPANTNALILKE  143 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv-~sNP~~~~~~~~~~  143 (300)
                      ++++||+||++...+...+..+.|     +..+.++++.+.+.. ++..+|. .|||......+...
T Consensus        70 ~~~~aDvviiavpt~~~~~~~~~d-----l~~v~~v~~~i~~l~-~~~iVV~~ST~~~g~~~~l~~~  130 (402)
T 1dlj_A           70 AYKEAELVIIATPTNYNSRINYFD-----TQHVETVIKEVLSVN-SHATLIIKSTIPIGFITEMRQK  130 (402)
T ss_dssp             HHHHCSEEEECCCCCEETTTTEEC-----CHHHHHHHHHHHHHC-SSCEEEECSCCCTTHHHHHHHH
T ss_pred             HhcCCCEEEEecCCCcccCCCCcc-----HHHHHHHHHHHHhhC-CCCEEEEeCCCCccHHHHHHHH
Confidence            899999999987555322222222     123334444444422 3544444 58998766555444

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=98.18  E-value=5.3e-06  Score=73.81  Aligned_cols=155  Identities=15%  Similarity=0.111  Sum_probs=87.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCC-------hh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD-------AV   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~-------~~   76 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|++.|+++  ++++....++.........+++-..+       ..
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   98 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC-------HVLCADIDG--DAADAAATKIGCGAAACRVDVSDEQQIIAMVDACV   98 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHH
Confidence            346899999999999999999999875       799999863  44433322221100000001000001       12


Q ss_pred             hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           77 EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                      +.+...|++|+.||.....   ..+.   ...+..|+.....+.+.+    .+..  ..++|++|+....         .
T Consensus        99 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~Iv~isS~~~~---------~  167 (277)
T 3gvc_A           99 AAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERG--GGAIVNLSSLAGQ---------V  167 (277)
T ss_dssp             HHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGT---------S
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhc---------c
Confidence            2234789999999975321   2222   345667876655555444    4332  3568888764431         1


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      +.|....|+.++.-...+.+.+|.+++  +..|+
T Consensus       168 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~  199 (277)
T 3gvc_A          168 AVGGTGAYGMSKAGIIQLSRITAAELR--SSGIR  199 (277)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHhc--ccCeE
Confidence            233223456666666667777777764  33454

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=98.18  E-value=1.6e-06  Score=75.49  Aligned_cols=154  Identities=12%  Similarity=0.118  Sum_probs=82.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEeCChhhhcC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAVEACT   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~~~~~a~~   80 (300)
                      +.++|.||||+|++|++++..|++.|.       +|+++|++. .++++....++.....   ....++.-..+..++++
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~-------~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   77 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGA-------KVGLHGRKA-PANIDETIASMRADGGDAAFFAADLATSEACQQLVD   77 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-CTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEECCCc-hhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence            457899999999999999999998875       789998861 1333322222221100   00000000011223333


Q ss_pred             -------CCcEEEEeCCC-CCC-C--CCc---HHHHHHhhHHHHHHHHHHH----hhhc---CCCeEEEEecCchhhHHH
Q 022227           81 -------GVNIAVMVGGF-PRK-E--GME---RKDVMSKNVSIYKAQASAL----EQHA---APNCKVLVVANPANTNAL  139 (300)
Q Consensus        81 -------~aDvVi~~ag~-~~~-~--g~~---r~dl~~~N~~i~~~i~~~i----~~~~---~~~~~viv~sNP~~~~~~  139 (300)
                             +.|+||+.||. ... +  ..+   -...+..|+.....+.+.+    .+..   .+..++|++++....   
T Consensus        78 ~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~---  154 (258)
T 3afn_B           78 EFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGH---  154 (258)
T ss_dssp             HHHHHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHH---
T ss_pred             HHHHHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhc---
Confidence                   79999999986 321 1  112   2335566766655555433    3321   111456666653321   


Q ss_pred             HHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       140 ~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                          . .+.|....++.++.....+...++++++
T Consensus       155 ----~-~~~~~~~~Y~~sK~a~~~~~~~~~~e~~  183 (258)
T 3afn_B          155 ----T-GGGPGAGLYGAAKAFLHNVHKNWVDFHT  183 (258)
T ss_dssp             ----H-CCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ----c-CCCCCchHHHHHHHHHHHHHHHHHHhhc
Confidence                1 1233333456666666667777777663

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.18  E-value=1.6e-05  Score=70.12  Aligned_cols=123  Identities=18%  Similarity=0.150  Sum_probs=72.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhh-----
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE-----   77 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~-----   77 (300)
                      ++.+++.||||+|.+|..++..|++.|.       +|+++|+++  ++++....++.........++.-..+..+     
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   74 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFAREGA-------SLVAVDREE--RLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEA   74 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHH
Confidence            4567899999999999999999998875       789999863  34432222221000000000000001112     


Q ss_pred             --hcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           78 --ACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        78 --a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                        .+...|++|+.||.....   ..+.   ...+..|+.....+.+.+.++-.+..++|++|+..
T Consensus        75 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  139 (263)
T 2a4k_A           75 LEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVA  139 (263)
T ss_dssp             HHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCT
T ss_pred             HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecch
Confidence              233579999999975422   1122   34577888888888877766531134678777654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=98.17  E-value=1.2e-05  Score=71.62  Aligned_cols=158  Identities=17%  Similarity=0.153  Sum_probs=90.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh---
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV---   76 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~---   76 (300)
                      .+.+++.||||+|.||.+++..|++.|.       .|++.|+++  +.++....++......   ...++.-..+..   
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~   96 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGV-------TVGALGRTR--TEVEEVADEIVGAGGQAIALEADVSDELQMRNAV   96 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence            3456899999999999999999999875       799999863  4444443344321100   000110000111   


Q ss_pred             ----hhcCCCcEEEEeCCCCCC--C--CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHH
Q 022227           77 ----EACTGVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        77 ----~a~~~aDvVi~~ag~~~~--~--g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                          +.+...|++|+.||....  +  ..+.   ...+..|+.....+.+.+    ++..  ..++|++|+.....    
T Consensus        97 ~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~Iv~isS~~~~~----  170 (283)
T 3v8b_A           97 RDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRG--GGAIVVVSSINGTR----  170 (283)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCSBTTT----
T ss_pred             HHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CceEEEEcChhhcc----
Confidence                223478999999997432  2  2222   345667766655555544    5543  35678877643210    


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                        . .+.|....|+.++.-...+.+.+|.+++  +..|+
T Consensus       171 --~-~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~  204 (283)
T 3v8b_A          171 --T-FTTPGATAYTATKAAQVAIVQQLALELG--KHHIR  204 (283)
T ss_dssp             --B-CCSTTCHHHHHHHHHHHHHHHHHHHHTT--TTTEE
T ss_pred             --C-CCCCCchHHHHHHHHHHHHHHHHHHHhC--ccCcE
Confidence              0 0222222456666666677888888875  34454

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=98.17  E-value=2.3e-06  Score=74.85  Aligned_cols=148  Identities=14%  Similarity=0.085  Sum_probs=81.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhh------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE------   77 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~------   77 (300)
                      +.+++.||||+|.+|.+++..|++.|.       +|++.|+++  ++++....++.........++.-..+..+      
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   75 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA-------KVAFSDINE--AAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQ   75 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHH
Confidence            456899999999999999999998875       789998863  33432222221000000000000001112      


Q ss_pred             -hcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           78 -ACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        78 -a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                       .+...|++|+.||.....   ..+.   ...+..|+.    ..+.+.+.+++..   .++|++|+....         .
T Consensus        76 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~---g~iv~isS~~~~---------~  143 (253)
T 1hxh_A           76 RRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG---GSIINMASVSSW---------L  143 (253)
T ss_dssp             HHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC---EEEEEECCGGGT---------S
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC---CEEEEEcchhhc---------C
Confidence             233579999999975321   1222   345666755    4455555555442   467777764431         1


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                      +.|....|+.++.-...+.+.+++++
T Consensus       144 ~~~~~~~Y~~sK~a~~~~~~~la~e~  169 (253)
T 1hxh_A          144 PIEQYAGYSASKAAVSALTRAAALSC  169 (253)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHh
Confidence            22322234555555556666666665

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=98.17  E-value=3e-05  Score=68.20  Aligned_cols=155  Identities=14%  Similarity=0.086  Sum_probs=89.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC-chhhhhhhhhhhhhhccC---CcccEEEeCChhhh-
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-AAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~-~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a-   78 (300)
                      +.+++.||||+|.||.+++..|++.|.       ++++.+... +.++++....++......   ...+++-..+..+. 
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~   82 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV-------NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLF   82 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC-------EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence            346899999999999999999998875       688877532 233444333333321100   00111111111222 


Q ss_pred             ------cCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           79 ------CTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        79 ------~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                            +...|++|+.||......   .+.   ...+..|+.....+.+.+.++-.+...+|++++......        
T Consensus        83 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~--------  154 (262)
T 3ksu_A           83 DFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAY--------  154 (262)
T ss_dssp             HHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHH--------
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccC--------
Confidence                  237899999999754321   122   345678888888888887765322356777776543211        


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcCC
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLNV  174 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~v  174 (300)
                       .|....|+.++.-...+.+.+|.+++-
T Consensus       155 -~~~~~~Y~asKaa~~~l~~~la~e~~~  181 (262)
T 3ksu_A          155 -TGFYSTYAGNKAPVEHYTRAASKELMK  181 (262)
T ss_dssp             -HCCCCC-----CHHHHHHHHHHHHTTT
T ss_pred             -CCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence             122234677777777888888988753

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=98.17  E-value=5.5e-06  Score=72.70  Aligned_cols=151  Identities=14%  Similarity=0.142  Sum_probs=84.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh---hhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN---GVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~---g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      +.++|.||||+|.+|..++..|++.|.       +|++.++++  ++++   ....|+.+....  ..  .-....+.+.
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~Dl~d~~~v--~~--~~~~~~~~~g   86 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGD-------KVAITYRSG--EPPEGFLAVKCDITDTEQV--EQ--AYKEIEETHG   86 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSS--CCCTTSEEEECCTTSHHHH--HH--HHHHHHHHTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCh--HhhccceEEEecCCCHHHH--HH--HHHHHHHHcC
Confidence            346899999999999999999998875       788888764  2222   122344432200  00  0001123345


Q ss_pred             CCcEEEEeCCCCCCC------CCcHHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCC
Q 022227           81 GVNIAVMVGGFPRKE------GMERKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKEFAPSIPA  150 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~------g~~r~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~  150 (300)
                      ..|++|+.||.....      .++-...+..|+.....+.+.    +.+..  ..++|++|+......         .|.
T Consensus        87 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~~---------~~~  155 (253)
T 2nm0_A           87 PVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAK--KGRVVLISSVVGLLG---------SAG  155 (253)
T ss_dssp             SCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECCCCCCCC---------HHH
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCEEEEECchhhCCC---------CCC
Confidence            679999999975321      122345667787666555554    43333  346787776432110         000


Q ss_pred             CcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          151 KNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       151 ~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      ...|+.++.-...+.+.++++++  +..|+
T Consensus       156 ~~~Y~asK~a~~~~~~~la~e~~--~~gi~  183 (253)
T 2nm0_A          156 QANYAASKAGLVGFARSLARELG--SRNIT  183 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC--SSSEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhh--hcCeE
Confidence            01123344444556666777764  34555

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=98.17  E-value=2.9e-06  Score=73.87  Aligned_cols=149  Identities=15%  Similarity=0.116  Sum_probs=83.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeC---Chhhhc
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT---DAVEAC   79 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~---~~~~a~   79 (300)
                      ++.+++.||||+|.+|.+++..|++.|.       +|++.|+++  ++++... ++.... ....++.-..   ...+.+
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~-~~~~~~-~~~~D~~~~~~~~~~~~~~   72 (246)
T 2ag5_A            4 LDGKVIILTAAAQGIGQAAALAFAREGA-------KVIATDINE--SKLQELE-KYPGIQ-TRVLDVTKKKQIDQFANEV   72 (246)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHGGGG-GSTTEE-EEECCTTCHHHHHHHHHHC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHH-hccCce-EEEeeCCCHHHHHHHHHHh
Confidence            4567899999999999999999999875       789999863  4443222 221100 0000000000   112235


Q ss_pred             CCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHHHHCCCCC
Q 022227           80 TGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEFAPSIP  149 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p  149 (300)
                      ...|++|+.||.....   ..+.   ...+..|+.....+.+.+    .+..  ..++|++|+....         .+.|
T Consensus        73 ~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~---------~~~~  141 (246)
T 2ag5_A           73 ERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK--SGNIINMSSVASS---------VKGV  141 (246)
T ss_dssp             SCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCSBTT---------TBCC
T ss_pred             CCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CceEEEEechHhC---------cCCC
Confidence            6789999999975421   1122   234566766655555544    3332  3467887764321         1112


Q ss_pred             -CCcEEeeehhhHHHHHHHHHHHcC
Q 022227          150 -AKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       150 -~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                       ....|+.++.-...+.+.+++++.
T Consensus       142 ~~~~~Y~~sK~a~~~~~~~la~e~~  166 (246)
T 2ag5_A          142 VNRCVYSTTKAAVIGLTKSVAADFI  166 (246)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHhh
Confidence             222345555555666777777663

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=98.16  E-value=2.3e-06  Score=73.97  Aligned_cols=145  Identities=17%  Similarity=0.202  Sum_probs=81.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEE-ecCCchhhhhhhhhhhhhhccCCcccEEEeCC------hhhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMELVDAAFPLLKGVVATTD------AVEA   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~-D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~------~~~a   78 (300)
                      ++|.||||+|++|.+++..|++.|.       +++++ +++  .++++....++...... . ...+..|      ..++
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~-------~v~~~~~r~--~~~~~~~~~~~~~~~~~-~-~~~~~~D~~~~~~~~~~   70 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF-------ALAIHYGQN--REKAEEVAEEARRRGSP-L-VAVLGANLLEAEAATAL   70 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC-------EEEEEESSC--HHHHHHHHHHHHHTTCS-C-EEEEECCTTSHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCC--HHHHHHHHHHHHhcCCc-e-EEEEeccCCCHHHHHHH
Confidence            5899999999999999999998874       67777 664  23333222222211100 0 0001111      1112


Q ss_pred             -------cCCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           79 -------CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        79 -------~~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                             +.+.|+||+.||.....   ..+   ....+..|+..    ++.+.+.+++..  ..++|++|+....     
T Consensus        71 ~~~~~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~-----  143 (245)
T 2ph3_A           71 VHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR--FGRIVNITSVVGI-----  143 (245)
T ss_dssp             HHHHHHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHH-----
T ss_pred             HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC--CCEEEEEeChhhc-----
Confidence                   34799999999975421   112   23456677776    566666666553  2467777765431     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                        .  +.|....++.++.....+.+.+++++
T Consensus       144 --~--~~~~~~~Y~~sK~a~~~~~~~la~e~  170 (245)
T 2ph3_A          144 --L--GNPGQANYVASKAGLIGFTRAVAKEY  170 (245)
T ss_dssp             --H--CCSSBHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --c--CCCCCcchHHHHHHHHHHHHHHHHHH
Confidence              1  12322234555555556666677665

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=98.16  E-value=6.1e-06  Score=71.82  Aligned_cols=156  Identities=14%  Similarity=0.138  Sum_probs=89.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh--
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a--   78 (300)
                      +.+++.||||+|+||.+++..|++.|.       ++++.|... .++++....++......   ...++.-..+..+.  
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~-------~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~   74 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGY-------NVAVNYAGS-KEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIK   74 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence            346899999999999999999999875       688887753 34444333333321100   00011000111222  


Q ss_pred             -----cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           79 -----CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        79 -----~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                           +...|++|+.||.....   ..+.   ...+..|+.....+.+.+    .+..  ..++|++|+....       
T Consensus        75 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~-------  145 (246)
T 3osu_A           75 EVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQR--SGAIINLSSVVGA-------  145 (246)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHH-------
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEEcchhhc-------
Confidence                 23789999999975422   1222   335677876666665555    4443  3467877764321       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      .  +.|....|+.++.-...+.+.+|+++.  +..|+
T Consensus       146 ~--~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~  178 (246)
T 3osu_A          146 V--GNPGQANYVATKAGVIGLTKSAARELA--SRGIT  178 (246)
T ss_dssp             H--CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             C--CCCCChHHHHHHHHHHHHHHHHHHHhc--ccCeE
Confidence            1  233333466666666677777887764  33454

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=98.16  E-value=4.3e-05  Score=66.13  Aligned_cols=150  Identities=15%  Similarity=0.126  Sum_probs=86.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEe---CC------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT---TD------   74 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~---~~------   74 (300)
                      +.+++.||||+|.+|.+++..|++.|.       +|+++|+++  ++++....++.........-+...   ++      
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~   83 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA-------SVVLLGRTE--ASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRE   83 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEecCH--HHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHH
Confidence            346899999999999999999999875       799999863  444433333332210100000000   01      


Q ss_pred             ----hhhhcCCCcEEEEeCCCCCCCC----CcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHH
Q 022227           75 ----AVEACTGVNIAVMVGGFPRKEG----MER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNAL  139 (300)
Q Consensus        75 ----~~~a~~~aDvVi~~ag~~~~~g----~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~  139 (300)
                          ..+.+...|++|+.||.....+    .+.   ...+..|+.....+.+.+    ++..  ..++|++|.....   
T Consensus        84 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~---  158 (247)
T 3i1j_A           84 LAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSE--DASIAFTSSSVGR---  158 (247)
T ss_dssp             HHHHHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS--SEEEEEECCGGGT---
T ss_pred             HHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCeEEEEcchhhc---
Confidence                1122347899999999742211    122   345667776666665555    4432  3567777764431   


Q ss_pred             HHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       140 ~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                            .+.|....|+.++.-...+.+.++.++.
T Consensus       159 ------~~~~~~~~Y~~sK~a~~~~~~~la~e~~  186 (247)
T 3i1j_A          159 ------KGRANWGAYGVSKFATEGLMQTLADELE  186 (247)
T ss_dssp             ------SCCTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ------CCCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence                  1223222455666666677777888774

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=98.16  E-value=1.1e-05  Score=72.44  Aligned_cols=151  Identities=11%  Similarity=0.103  Sum_probs=89.0

Q ss_pred             CCcEEEEEcCCC--hHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh--
Q 022227            4 EPVRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV--   76 (300)
Q Consensus         4 ~~~kV~IiGAaG--~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~--   76 (300)
                      +.+++.||||+|  .+|..++..|++.|.       +|++.|+++  +..+. ..++......   ...+++-..+..  
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-------~V~~~~r~~--~~~~~-~~~~~~~~~~~~~~~~Dv~d~~~v~~~   98 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-------EVALTYLSE--TFKKR-VDPLAESLGVKLTVPCDVSDAESVDNM   98 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-------EEEEEESSG--GGHHH-HHHHHHHHTCCEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHH-HHHHHHhcCCeEEEEcCCCCHHHHHHH
Confidence            456899999887  999999999999875       789999863  22111 1111111000   000110001111  


Q ss_pred             -----hhcCCCcEEEEeCCCCCC-----C--CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           77 -----EACTGVNIAVMVGGFPRK-----E--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        77 -----~a~~~aDvVi~~ag~~~~-----~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                           +.+...|++|+.||....     +  ..+.   ...+..|+.....+.+.+..+-.+..++|++|+....     
T Consensus        99 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~-----  173 (296)
T 3k31_A           99 FKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAE-----  173 (296)
T ss_dssp             HHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGT-----
T ss_pred             HHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhc-----
Confidence                 223468999999997642     1  1222   3457788888888888887764334578887764431     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                          .+.|....|+.++.-...+.+.+|.+++
T Consensus       174 ----~~~~~~~~Y~asKaal~~l~~~la~e~~  201 (296)
T 3k31_A          174 ----KVVPHYNVMGVCKAALEASVKYLAVDLG  201 (296)
T ss_dssp             ----SCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----cCCCCchhhHHHHHHHHHHHHHHHHHHh
Confidence                1233233455566666677777787774

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=98.15  E-value=5e-06  Score=73.86  Aligned_cols=153  Identities=15%  Similarity=0.190  Sum_probs=84.7

Q ss_pred             CCcEEEEEcCCCh--HHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCCh------
Q 022227            4 EPVRVLVTGAAGQ--IGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDA------   75 (300)
Q Consensus         4 ~~~kV~IiGAaG~--vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~------   75 (300)
                      +.++|.||||+|+  +|..++..|+..|.       +|++.|++...+.++....+..... ....+++-..+.      
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-------~V~~~~r~~~~~~~~~l~~~~~~~~-~~~~Dl~~~~~v~~~~~~   96 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGA-------ELAFTYVGQFKDRVEKLCAEFNPAA-VLPCDVISDQEIKDLFVE   96 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTC-------EEEEEECTTCHHHHHHHHGGGCCSE-EEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCC-------EEEEeeCchHHHHHHHHHHhcCCce-EEEeecCCHHHHHHHHHH
Confidence            4578999999977  99999999998875       7899998642222222111111000 000010000011      


Q ss_pred             -hhhcCCCcEEEEeCCCCCCC---C-----CcH---HHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEecCchhhHHHHHH
Q 022227           76 -VEACTGVNIAVMVGGFPRKE---G-----MER---KDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPANTNALILK  142 (300)
Q Consensus        76 -~~a~~~aDvVi~~ag~~~~~---g-----~~r---~dl~~~N~~i~~~i~~~i~~~~~-~~~~viv~sNP~~~~~~~~~  142 (300)
                       .+.+...|++|+.||.....   +     .+.   ...+..|+.....+.+.+...-. ...++|++|+....      
T Consensus        97 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~------  170 (280)
T 3nrc_A           97 LGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAE------  170 (280)
T ss_dssp             HHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGT------
T ss_pred             HHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccc------
Confidence             12234679999999975421   1     221   23566777666666665554311 13467887765431      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                         .+.|....|+.++.-...+.+.+++++.
T Consensus       171 ---~~~~~~~~Y~asKaal~~~~~~la~e~~  198 (280)
T 3nrc_A          171 ---KAMPSYNTMGVAKASLEATVRYTALALG  198 (280)
T ss_dssp             ---SCCTTTHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ---cCCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence               1233333455566666667777777764

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=98.15  E-value=1.7e-05  Score=73.01  Aligned_cols=155  Identities=14%  Similarity=0.098  Sum_probs=88.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch-hh----hhhhhhhhhhhcc---CCcccEEEeCChh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-EA----LNGVKMELVDAAF---PLLKGVVATTDAV   76 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~-~~----l~g~~~dl~~~~~---~~~~~v~~~~~~~   76 (300)
                      .++|.||||+|.||..++..|++.|.       +|++.+.+... ++    ++....++.....   ....++.-..+..
T Consensus        45 gk~vlVTGas~GIG~aia~~La~~Ga-------~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~  117 (346)
T 3kvo_A           45 GCTVFITGASRGIGKAIALKAAKDGA-------NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQIS  117 (346)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHH
T ss_pred             CCEEEEeCCChHHHHHHHHHHHHCCC-------EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHH
Confidence            46899999999999999999998875       78999886421 11    1111222221110   0000110000111


Q ss_pred             -------hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEecCchhhHHHHH
Q 022227           77 -------EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALIL  141 (300)
Q Consensus        77 -------~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~--~~~~viv~sNP~~~~~~~~  141 (300)
                             +.+...|++|+.||.....   ..+.   ...+..|+.....+.+.+..+-.  +..+||++|++.....   
T Consensus       118 ~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~---  194 (346)
T 3kvo_A          118 AAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNP---  194 (346)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCG---
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCC---
Confidence                   2234889999999975322   1222   34577787777666666543211  1357888887653210   


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                          ...+....|+.++.-...+.+.+|++++
T Consensus       195 ----~~~~~~~~Y~aSKaal~~l~~~la~e~~  222 (346)
T 3kvo_A          195 ----VWFKQHCAYTIAKYGMSMYVLGMAEEFK  222 (346)
T ss_dssp             ----GGTSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ----CCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence                0022222456666666778888899887

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=98.15  E-value=2e-06  Score=77.06  Aligned_cols=151  Identities=16%  Similarity=0.097  Sum_probs=84.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-CcccEE-EeC------Ch
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVV-ATT------DA   75 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-~~~~v~-~~~------~~   75 (300)
                      +.++|.||||+|++|++++..|++.|.       +|+++|++.  ++++....++.....+ ...++. +..      +.
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v   87 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGS-------NVVIASRKL--ERLKSAADELQANLPPTKQARVIPIQCNIRNEEEV   87 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhccccCCccEEEEecCCCCHHHH
Confidence            346899999999999999999998875       789998863  4444333333221000 000111 111      11


Q ss_pred             hhhc-------CCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCchhhHHHH
Q 022227           76 VEAC-------TGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALI  140 (300)
Q Consensus        76 ~~a~-------~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~~~~~~~  140 (300)
                      .+++       ...|+||++||.....   ..+.   ...+..|+.....+.+.+.+..  ....++|+++... .    
T Consensus        88 ~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~----  162 (303)
T 1yxm_A           88 NNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-K----  162 (303)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-T----
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-c----
Confidence            2222       3589999999964321   1122   3457778887777777754420  0124677777554 1    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                           .+.|....++.++.....+.+.+++++.
T Consensus       163 -----~~~~~~~~Y~~sK~a~~~~~~~la~e~~  190 (303)
T 1yxm_A          163 -----AGFPLAVHSGAARAGVYNLTKSLALEWA  190 (303)
T ss_dssp             -----TCCTTCHHHHHHHHHHHHHHHHHHHHTG
T ss_pred             -----cCCCcchhhHHHHHHHHHHHHHHHHHhc
Confidence                 1223222334444444556666777663

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=98.15  E-value=7.3e-06  Score=72.92  Aligned_cols=157  Identities=18%  Similarity=0.129  Sum_probs=87.2

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCC------
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD------   74 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~------   74 (300)
                      |+.+.+++.||||+|.||.+++..|++.|.       +|++.|++.  ++++....++.........+++-..+      
T Consensus         1 M~l~gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~   71 (281)
T 3zv4_A            1 MKLTGEVALITGGASGLGRALVDRFVAEGA-------RVAVLDKSA--ERLRELEVAHGGNAVGVVGDVRSLQDQKRAAE   71 (281)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHTBTTEEEEECCTTCHHHHHHHHH
T ss_pred             CCcCCCEEEEECCCcHHHHHHHHHHHHCcC-------EEEEEeCCH--HHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHH
Confidence            777778999999999999999999999875       799999863  44432222111000000000000001      


Q ss_pred             -hhhhcCCCcEEEEeCCCCCCC--------CCcH---HHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEecCchhhHHHHH
Q 022227           75 -AVEACTGVNIAVMVGGFPRKE--------GMER---KDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALIL  141 (300)
Q Consensus        75 -~~~a~~~aDvVi~~ag~~~~~--------g~~r---~dl~~~N~~i~~~i~~~i~~~~-~~~~~viv~sNP~~~~~~~~  141 (300)
                       ..+.+...|++|+.||.....        ..+.   ...+..|+.....+.+.+.++- .+...+|++++....     
T Consensus        72 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~-----  146 (281)
T 3zv4_A           72 RCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGF-----  146 (281)
T ss_dssp             HHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGT-----
T ss_pred             HHHHhcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhc-----
Confidence             112234679999999974311        1111   2345667665555554443221 002357777754421     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQ  175 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~  175 (300)
                          .+.|..-.|+.++.-...+.+.+|.+++-.
T Consensus       147 ----~~~~~~~~Y~asKaa~~~l~~~la~e~~~~  176 (281)
T 3zv4_A          147 ----YPNGGGPLYTATKHAVVGLVRQMAFELAPH  176 (281)
T ss_dssp             ----SSSSSCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ----cCCCCCchhHHHHHHHHHHHHHHHHHhcCC
Confidence                122222245666666667788888888744

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.15  E-value=8.7e-06  Score=73.13  Aligned_cols=153  Identities=12%  Similarity=0.145  Sum_probs=84.7

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEE-EeC------C
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVV-ATT------D   74 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~-~~~------~   74 (300)
                      +++.+++.||||+|.||..++..|++.|.       +|++.|+++  ++++....++...... ..++. +..      +
T Consensus        23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~-~~~~~~~~~Dv~d~~~   92 (297)
T 1xhl_A           23 RFSGKSVIITGSSNGIGRSAAVIFAKEGA-------QVTITGRNE--DRLEETKQQILKAGVP-AEKINAVVADVTEASG   92 (297)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCC-GGGEEEEECCTTSHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCC-CceEEEEecCCCCHHH
Confidence            34557899999999999999999998875       789999863  4444333333221100 00110 111      1


Q ss_pred             hhhh-------cCCCcEEEEeCCCCCCCC-----CcH---HHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEecCchhhHH
Q 022227           75 AVEA-------CTGVNIAVMVGGFPRKEG-----MER---KDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPANTNA  138 (300)
Q Consensus        75 ~~~a-------~~~aDvVi~~ag~~~~~g-----~~r---~dl~~~N~~i~~~i~~~i~~~~~-~~~~viv~sNP~~~~~  138 (300)
                      ..++       +...|++|+.||......     .+.   ...+..|+.....+.+.+.+.-. ++.++|++|+-...  
T Consensus        93 v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~~~~--  170 (297)
T 1xhl_A           93 QDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAG--  170 (297)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGS--
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCchhc--
Confidence            1222       237899999999753221     122   34566777666665555444310 11467777764321  


Q ss_pred             HHHHHHCCCC-CCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          139 LILKEFAPSI-PAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       139 ~~~~~~~~~~-p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                             .+. |....|+.++.-...+.+.++.++.
T Consensus       171 -------~~~~~~~~~Y~asKaa~~~l~~~la~el~  199 (297)
T 1xhl_A          171 -------PQAHSGYPYYACAKAALDQYTRCTAIDLI  199 (297)
T ss_dssp             -------SSCCTTSHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             -------cCCCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence                   112 3222355555555566666776653

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=98.15  E-value=7.9e-06  Score=72.64  Aligned_cols=154  Identities=13%  Similarity=0.051  Sum_probs=88.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCCh----
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDA----   75 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~----   75 (300)
                      .+.+++.||||+|.||.+++..|++.|.       +|++.|.+. .+.++....++......   ...++.-..+.    
T Consensus        27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   98 (283)
T 1g0o_A           27 LEGKVALVTGAGRGIGREMAMELGRRGC-------KVIVNYANS-TESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMF   98 (283)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCc-hHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHH
Confidence            3456899999999999999999998875       788888764 22222222222211100   00000000011    


Q ss_pred             ---hhhcCCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           76 ---VEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        76 ---~~a~~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                         .+.+...|++|+.||......   .+   -...+..|+.....+.+.+.++-.+..++|++|+-...         .
T Consensus        99 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~---------~  169 (283)
T 1g0o_A           99 EEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQ---------A  169 (283)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGT---------C
T ss_pred             HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhc---------c
Confidence               122347899999999754221   12   23457789888888888877662223467877764321         1


Q ss_pred             CCCC-CcEEeeehhhHHHHHHHHHHHcC
Q 022227          147 SIPA-KNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       147 ~~p~-~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      +.+. ...|+.++.-...+.+.++.++.
T Consensus       170 ~~~~~~~~Y~asK~a~~~~~~~la~e~~  197 (283)
T 1g0o_A          170 KAVPKHAVYSGSKGAIETFARCMAIDMA  197 (283)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence            1221 22455566556666777777663

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=98.15  E-value=3.4e-05  Score=68.63  Aligned_cols=152  Identities=10%  Similarity=0.078  Sum_probs=86.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC----cccEEEeCChh---
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL----LKGVVATTDAV---   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~----~~~v~~~~~~~---   76 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|++.|+++  ++++....++.......    ..+++-..+..   
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~  102 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY-------SVVITGRRP--DVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALF  102 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHH
Confidence            346899999999999999999999875       799999863  44443333332211000    00110000111   


Q ss_pred             ----hhcCCCcEEEEeCCCCCCC----CCcH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           77 ----EACTGVNIAVMVGGFPRKE----GMER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        77 ----~a~~~aDvVi~~ag~~~~~----g~~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                          +.+...|++|+.||.....    ..+.   ...+..|+..    ++.+.+.+.+..++..++|++|+-...     
T Consensus       103 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~-----  177 (281)
T 4dry_A          103 AAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQ-----  177 (281)
T ss_dssp             HHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGT-----
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhC-----
Confidence                2234679999999975321    1222   2356667655    455555555543223578887764431     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                          .+.|....|+.++.-...+.+.+|.+++
T Consensus       178 ----~~~~~~~~Y~asKaa~~~l~~~la~e~~  205 (281)
T 4dry_A          178 ----TPRPNSAPYTATKHAITGLTKSTALDGR  205 (281)
T ss_dssp             ----CCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ----CCCCCChhHHHHHHHHHHHHHHHHHHhc
Confidence                1233233456666666677777777764

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=98.14  E-value=1.4e-05  Score=70.62  Aligned_cols=153  Identities=17%  Similarity=0.120  Sum_probs=88.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV----   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~----   76 (300)
                      +.+++.||||+|.||.+++..|++.|.       .+++.+... .+.++....++......   ...++.-..+..    
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~-------~Vv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~   97 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGF-------TVVINYAGK-AAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFA   97 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTC-------EEEEEESSC-SHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEcCCC-HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence            446799999999999999999999875       677775432 23333333233221100   000100000111    


Q ss_pred             ---hhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCC
Q 022227           77 ---EACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS  147 (300)
Q Consensus        77 ---~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~  147 (300)
                         +.+...|++|+.||......   .+.   ...+..|+.....+.+.+.+.-.+..++|++|+....       .  +
T Consensus        98 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~-------~--~  168 (267)
T 3u5t_A           98 TAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVG-------L--L  168 (267)
T ss_dssp             HHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHH-------H--C
T ss_pred             HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhc-------c--C
Confidence               22347899999999754221   122   3456788888777777766553223567877764321       1  2


Q ss_pred             CCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          148 IPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       148 ~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .|....|+.++.-...+.+.+|.+++
T Consensus       169 ~~~~~~Y~asKaa~~~l~~~la~e~~  194 (267)
T 3u5t_A          169 HPSYGIYAAAKAGVEAMTHVLSKELR  194 (267)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhh
Confidence            23233456666667778888888875

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=98.14  E-value=5.1e-06  Score=74.76  Aligned_cols=157  Identities=17%  Similarity=0.134  Sum_probs=88.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh--
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a--   78 (300)
                      +.++|.||||+|.||.+++..|++.|.       +|++.|+++  ++++....++......   ...+++-..+..++  
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~  100 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGA-------RLVLSDVDQ--PALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLAD  100 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence            346899999999999999999999875       799999863  4554443334321100   00011000112222  


Q ss_pred             -----cCCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           79 -----CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        79 -----~~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                           +...|++|+.||.....   ..+   -...+..|+.....+.+.    +.+... ..++|++|+....       
T Consensus       101 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~-------  172 (301)
T 3tjr_A          101 EAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGT-GGHIAFTASFAGL-------  172 (301)
T ss_dssp             HHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCS-CEEEEEECCGGGT-------
T ss_pred             HHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC-CcEEEEeCchhhc-------
Confidence                 23789999999975321   112   234566776665555555    444432 3567777765431       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEE
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN  181 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~  181 (300)
                        .+.|....|+.++.-...+.+.++.++.  +..|+.
T Consensus       173 --~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v  206 (301)
T 3tjr_A          173 --VPNAGLGTYGVAKYGVVGLAETLAREVK--PNGIGV  206 (301)
T ss_dssp             --SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred             --CCCCCchHHHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence              1223222455555555566667777663  334553

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=98.14  E-value=1e-05  Score=72.00  Aligned_cols=152  Identities=18%  Similarity=0.166  Sum_probs=87.2

Q ss_pred             CCCcEEEEEcCC--ChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc--c-CCcccEEEeCChhh
Q 022227            3 KEPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--F-PLLKGVVATTDAVE   77 (300)
Q Consensus         3 ~~~~kV~IiGAa--G~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~--~-~~~~~v~~~~~~~~   77 (300)
                      ++.++|.||||+  |.||.+++..|+..|.       +|++.|+++  + ++....++....  . ....++.-..+..+
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-------~V~~~~r~~--~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~   88 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGA-------QLAFTYATP--K-LEKRVREIAKGFGSDLVVKCDVSLDEDIKN   88 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTC-------EEEEEESSG--G-GHHHHHHHHHHTTCCCEEECCTTCHHHHHH
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCC-------EEEEEeCCH--H-HHHHHHHHHHhcCCeEEEEcCCCCHHHHHH
Confidence            345689999998  8999999999998875       788998864  1 111111221110  0 00001100001112


Q ss_pred             h-------cCCCcEEEEeCCCCCC-----C--CCcH---HHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEecCchhhHHH
Q 022227           78 A-------CTGVNIAVMVGGFPRK-----E--GMER---KDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPANTNAL  139 (300)
Q Consensus        78 a-------~~~aDvVi~~ag~~~~-----~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~-~~~~viv~sNP~~~~~~  139 (300)
                      +       +...|++|+.||....     +  ..+.   ...+..|+.....+.+.+.+.-. +..++|++|+....   
T Consensus        89 ~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~---  165 (285)
T 2p91_A           89 LKKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAE---  165 (285)
T ss_dssp             HHHHHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGT---
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhc---
Confidence            2       2378999999997532     1  1222   34677888888888888776532 13467877764321   


Q ss_pred             HHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       140 ~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                            .+.|....|+.++.-...+.+.++.++.
T Consensus       166 ------~~~~~~~~Y~~sK~a~~~~~~~la~e~~  193 (285)
T 2p91_A          166 ------KVVPHYNVMGIAKAALESTVRYLAYDIA  193 (285)
T ss_dssp             ------SBCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------cCCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence                  1223223455566666666777777763

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.14  E-value=8.8e-06  Score=73.24  Aligned_cols=90  Identities=20%  Similarity=0.265  Sum_probs=59.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .+||+|+| +|.+|+.++..|+ .|+       +|+++|+++  ++++.....+.+   .....++.++++. ++++||+
T Consensus        12 ~~~V~vIG-~G~MG~~iA~~la-aG~-------~V~v~d~~~--~~~~~~~~~l~~---~~~~~i~~~~~~~-~~~~aDl   76 (293)
T 1zej_A           12 HMKVFVIG-AGLMGRGIAIAIA-SKH-------EVVLQDVSE--KALEAAREQIPE---ELLSKIEFTTTLE-KVKDCDI   76 (293)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHH-TTS-------EEEEECSCH--HHHHHHHHHSCG---GGGGGEEEESSCT-TGGGCSE
T ss_pred             CCeEEEEe-eCHHHHHHHHHHH-cCC-------EEEEEECCH--HHHHHHHHHHHH---HHhCCeEEeCCHH-HHcCCCE
Confidence            37999999 7999999999999 876       899999964  444322111211   1234566677765 4999999


Q ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCe
Q 022227           85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC  125 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~  125 (300)
                      ||.+.-              .+..+.+.+...+... + ++
T Consensus        77 Vieavp--------------e~~~vk~~l~~~l~~~-~-~~  101 (293)
T 1zej_A           77 VMEAVF--------------EDLNTKVEVLREVERL-T-NA  101 (293)
T ss_dssp             EEECCC--------------SCHHHHHHHHHHHHTT-C-CS
T ss_pred             EEEcCc--------------CCHHHHHHHHHHHhcC-C-CC
Confidence            999741              2233444555556666 4 66

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=98.14  E-value=6.5e-06  Score=72.87  Aligned_cols=154  Identities=14%  Similarity=0.115  Sum_probs=88.6

Q ss_pred             CC-CCCcEEEEEcCC--ChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc--c-CCcccEEEeCC
Q 022227            1 MA-KEPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--F-PLLKGVVATTD   74 (300)
Q Consensus         1 m~-~~~~kV~IiGAa--G~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~--~-~~~~~v~~~~~   74 (300)
                      |+ ++.+++.||||+  |.||.+++..|++.|.       +|+++|+++.   ++....++....  . ....++.-..+
T Consensus         1 M~~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~-------~V~~~~r~~~---~~~~~~~l~~~~~~~~~~~~D~~~~~~   70 (275)
T 2pd4_A            1 MGFLKGKKGLIVGVANNKSIAYGIAQSCFNQGA-------TLAFTYLNES---LEKRVRPIAQELNSPYVYELDVSKEEH   70 (275)
T ss_dssp             -CTTTTCEEEEECCCSTTSHHHHHHHHHHTTTC-------EEEEEESSTT---THHHHHHHHHHTTCCCEEECCTTCHHH
T ss_pred             CCCCCCCEEEEECCCCCCcHHHHHHHHHHHCCC-------EEEEEeCCHH---HHHHHHHHHHhcCCcEEEEcCCCCHHH
Confidence            55 455789999998  9999999999998875       7899998642   111111222110  0 00001000001


Q ss_pred             hhhh-------cCCCcEEEEeCCCCCC-----C--CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhH
Q 022227           75 AVEA-------CTGVNIAVMVGGFPRK-----E--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN  137 (300)
Q Consensus        75 ~~~a-------~~~aDvVi~~ag~~~~-----~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~  137 (300)
                      ..++       +...|++|+.||....     +  ..+.   ...+..|+.....+.+.+.+.-.+..++|++|+.... 
T Consensus        71 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-  149 (275)
T 2pd4_A           71 FKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGST-  149 (275)
T ss_dssp             HHHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT-
T ss_pred             HHHHHHHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhc-
Confidence            1122       2367999999997532     1  1222   3467789888888888887653223467777764321 


Q ss_pred             HHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          138 ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       138 ~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                              .+.|....|+.++.-...+.+.+++++.
T Consensus       150 --------~~~~~~~~Y~asK~a~~~~~~~la~e~~  177 (275)
T 2pd4_A          150 --------KYMAHYNVMGLAKAALESAVRYLAVDLG  177 (275)
T ss_dssp             --------SBCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------CCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence                    1223222355566666667777777763

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=98.14  E-value=5e-06  Score=73.23  Aligned_cols=155  Identities=13%  Similarity=0.119  Sum_probs=87.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchh---hhhhhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE---ALNGVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~---~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      +.++|.||||+|+||.+++..|++.|.       +|++.|.+....   .+.....|+.+....  ..+  .....+.+.
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~~~~~~~~~~~~~~Dv~d~~~v--~~~--~~~~~~~~g   95 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNY-------RVVATSRSIKPSADPDIHTVAGDISKPETA--DRI--VREGIERFG   95 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESSCCCCSSTTEEEEESCTTSHHHH--HHH--HHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCChhhcccCceEEEEccCCCHHHH--HHH--HHHHHHHCC
Confidence            456899999999999999999999875       788998864211   111123344432200  000  001123344


Q ss_pred             CCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHHHHCCCCCC
Q 022227           81 GVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEFAPSIPA  150 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~  150 (300)
                      ..|++|+.||......   .+.   ...+..|+.....+.+.+    .+..  ..++|++|.....       .....++
T Consensus        96 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~-------~~~~~~~  166 (260)
T 3un1_A           96 RIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQG--SGHIVSITTSLVD-------QPMVGMP  166 (260)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCTTTT-------SCBTTCC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEEechhhc-------cCCCCCc
Confidence            8999999999754221   122   345667876666665554    4443  3467777654320       0001111


Q ss_pred             CcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          151 KNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       151 ~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      ...++.++.-...+.+.+|.++.  +..|+
T Consensus       167 ~~~Y~~sKaa~~~l~~~la~e~~--~~gI~  194 (260)
T 3un1_A          167 SALASLTKGGLNAVTRSLAMEFS--RSGVR  194 (260)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTT--TTTEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhC--cCCeE
Confidence            12345556666677778888874  34454

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=98.13  E-value=1e-05  Score=71.50  Aligned_cols=151  Identities=11%  Similarity=0.040  Sum_probs=87.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEec-CCchhhhhhhhhhhhhh-ccC---CcccEEEe----CCh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI-PPAAEALNGVKMELVDA-AFP---LLKGVVAT----TDA   75 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~-~~~~~~l~g~~~dl~~~-~~~---~~~~v~~~----~~~   75 (300)
                      .+++.||||+|.||.+++..|++.|.       +|+++|+ ++  ++++....++... ...   ...++.-.    .+.
T Consensus        11 ~k~~lVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~   81 (276)
T 1mxh_A           11 CPAAVITGGARRIGHSIAVRLHQQGF-------RVVVHYRHSE--GAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCC   81 (276)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSCH--HHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCCh--HHHHHHHHHHHHhcCCceEEEeccCCCccccHHHH
Confidence            46899999999999999999998875       7899988 52  4444333333221 000   00111101    111


Q ss_pred             hhh-------cCCCcEEEEeCCCCCCCC-----------------CcHHHHHHhhHHHHHHHHHHHhhhcC-CC------
Q 022227           76 VEA-------CTGVNIAVMVGGFPRKEG-----------------MERKDVMSKNVSIYKAQASALEQHAA-PN------  124 (300)
Q Consensus        76 ~~a-------~~~aDvVi~~ag~~~~~g-----------------~~r~dl~~~N~~i~~~i~~~i~~~~~-~~------  124 (300)
                      .+.       +...|++|+.||......                 ++-...+..|+.....+.+.+.++-. +.      
T Consensus        82 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~  161 (276)
T 1mxh_A           82 EDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRN  161 (276)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCC
T ss_pred             HHHHHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            122       237899999999753211                 11134577888887777777766421 11      


Q ss_pred             eEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       125 ~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .++|++|+....         .+.|....|+.++.-...+.+.++.++.
T Consensus       162 g~iv~isS~~~~---------~~~~~~~~Y~asK~a~~~l~~~la~e~~  201 (276)
T 1mxh_A          162 LSVVNLCDAMTD---------LPLPGFCVYTMAKHALGGLTRAAALELA  201 (276)
T ss_dssp             EEEEEECCGGGG---------SCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             cEEEEECchhhc---------CCCCCCeehHHHHHHHHHHHHHHHHHHh
Confidence            467777765431         1223223455566666667777777763

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=98.13  E-value=4.4e-06  Score=74.57  Aligned_cols=167  Identities=13%  Similarity=0.007  Sum_probs=93.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc---
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC---   79 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~---   79 (300)
                      .+.++|.||||+|.||.+++..|++.|.       +|++.|+++  ++++....++.........++.-..+..+++   
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~   84 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELARRGA-------TVIMAVRDT--RKGEAAARTMAGQVEVRELDLQDLSSVRRFADGV   84 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTC
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhc
Confidence            3457899999999999999999999875       799999863  3433222222100000000000001122333   


Q ss_pred             CCCcEEEEeCCCCCCC----CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH--C--CCCCCC
Q 022227           80 TGVNIAVMVGGFPRKE----GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF--A--PSIPAK  151 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~----g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~--~--~~~p~~  151 (300)
                      ...|++|+.||.....    .++-...+..|+.....+.+.+.+.-.  .++|++|+........-...  .  ..++..
T Consensus        85 ~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~--~riv~isS~~~~~~~~~~~~~~~~~~~~~~~  162 (291)
T 3rd5_A           85 SGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLT--DRVVTVSSMAHWPGRINLEDLNWRSRRYSPW  162 (291)
T ss_dssp             CCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEE--EEEEEECCGGGTTCCCCSSCTTCSSSCCCHH
T ss_pred             CCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--hheeEeechhhccCCCCcccccccccCCCCc
Confidence            3679999999975322    112245688999999999999888754  26777776543210000000  0  001111


Q ss_pred             cEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          152 NITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       152 ~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      ..|+.++.-...+.+.++++++-.-..|+
T Consensus       163 ~~Y~~sK~a~~~~~~~la~e~~~~g~~i~  191 (291)
T 3rd5_A          163 LAYSQSKLANLLFTSELQRRLTAAGSPLR  191 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhCCCCEE
Confidence            13555666666677777777653322354

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=98.12  E-value=0.0001  Score=64.27  Aligned_cols=150  Identities=14%  Similarity=0.109  Sum_probs=87.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc----ccE--EEeCChh--
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL----KGV--VATTDAV--   76 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~----~~v--~~~~~~~--   76 (300)
                      .+++.||||+|.||.+++..|++.|.       +|++.|+++  ++++....++........    .++  .-..+..  
T Consensus        12 ~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   82 (252)
T 3f1l_A           12 DRIILVTGASDGIGREAAMTYARYGA-------TVILLGRNE--EKLRQVASHINEETGRQPQWFILDLLTCTSENCQQL   82 (252)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHH
Confidence            36899999999999999999998875       799999863  444433333332110000    011  0000111  


Q ss_pred             -----hhcCCCcEEEEeCCCCC--CC--CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHH
Q 022227           77 -----EACTGVNIAVMVGGFPR--KE--GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        77 -----~a~~~aDvVi~~ag~~~--~~--g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                           +.+...|++|+.||...  .+  ..+.   ...+..|+.....+.+.+    ++..  ..++|++|+....    
T Consensus        83 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~----  156 (252)
T 3f1l_A           83 AQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSD--AGSLVFTSSSVGR----  156 (252)
T ss_dssp             HHHHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS--SCEEEEECCGGGT----
T ss_pred             HHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCC--CCEEEEECChhhc----
Confidence                 22337899999999742  12  2232   235677776665555554    4433  3467887765431    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCC
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNV  174 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v  174 (300)
                           .+.|....|+.++.-...+.+.+|++++-
T Consensus       157 -----~~~~~~~~Y~asK~a~~~l~~~la~e~~~  185 (252)
T 3f1l_A          157 -----QGRANWGAYAASKFATEGMMQVLADEYQQ  185 (252)
T ss_dssp             -----SCCTTCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             -----cCCCCCchhHHHHHHHHHHHHHHHHHhcC
Confidence                 12332234566666666778888888863

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=98.12  E-value=9.2e-06  Score=71.64  Aligned_cols=156  Identities=16%  Similarity=0.211  Sum_probs=89.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC----CcccEEEeCChh---
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----LLKGVVATTDAV---   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~----~~~~v~~~~~~~---   76 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|++.|+++  ++++....++......    ...++.-..+..   
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~   89 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA-------RLVLSGRDV--SELDAARRALGEQFGTDVHTVAIDLAEPDAPAELA   89 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHH
Confidence            456899999999999999999999875       799999863  4444333333321100    000110011111   


Q ss_pred             ----hhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           77 ----EACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        77 ----~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i----~~~i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                          +.+...|++|+.||......   .+.   ...+..|+.....+    .+.+.+... ..++|++|+....      
T Consensus        90 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~------  162 (266)
T 4egf_A           90 RRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGE-GGAIITVASAAAL------  162 (266)
T ss_dssp             HHHHHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGT------
T ss_pred             HHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEEcchhhc------
Confidence                22347899999999764221   122   23466676654444    444444432 3567777765431      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                         .+.|....|+.++.-...+.+.+|.++.  +..|+
T Consensus       163 ---~~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gI~  195 (266)
T 4egf_A          163 ---APLPDHYAYCTSKAGLVMATKVLARELG--PHGIR  195 (266)
T ss_dssp             ---SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             ---cCCCCChHHHHHHHHHHHHHHHHHHHHh--hhCeE
Confidence               1233223456666666677777777764  33454

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=98.12  E-value=2.2e-05  Score=69.77  Aligned_cols=150  Identities=17%  Similarity=0.197  Sum_probs=82.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh---
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE---   77 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~---   77 (300)
                      +.++|+||||+|++|..++..|++.|.       +|+++++++  ++++....++......   ...++.-..+..+   
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~  113 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVS-------HVICISRTQ--KSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVIN  113 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-------EEEEEESSH--HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC-------EEEEEcCCH--HHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHH
Confidence            346899999999999999999998764       688887653  3343332233221100   0000000001112   


Q ss_pred             ----hcCCCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHH----HHHHHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           78 ----ACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYK----AQASALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        78 ----a~~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~----~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                          .+...|+||+.||.....   ..+   -.+.+..|+....    .+.+.+.+..  ..++|++|+....       
T Consensus       114 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~-------  184 (285)
T 2c07_A          114 KILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR--YGRIINISSIVGL-------  184 (285)
T ss_dssp             HHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT--CEEEEEECCTHHH-------
T ss_pred             HHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCEEEEECChhhc-------
Confidence                234789999999975421   112   2345667776644    4444444443  2467777765421       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .  +.|....++.++.....+.+.+++++.
T Consensus       185 ~--~~~~~~~Y~asK~a~~~~~~~la~e~~  212 (285)
T 2c07_A          185 T--GNVGQANYSSSKAGVIGFTKSLAKELA  212 (285)
T ss_dssp             H--CCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             c--CCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            1  123222345555555566666776653

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=98.12  E-value=1e-05  Score=71.42  Aligned_cols=121  Identities=19%  Similarity=0.152  Sum_probs=69.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh-
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-   78 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a-   78 (300)
                      ++.++|.||||+|++|..++..|++.|.       +|+++|+++  +.++....++......   ...++.-..+..++ 
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~   99 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKS-------KLVLWDINK--HGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSA   99 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEEcCH--HHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHH
Confidence            4457899999999999999999998875       789999863  3343332233221100   00000000011122 


Q ss_pred             ------cCCCcEEEEeCCCCCCCCC---c---HHHHHHhhHHHHHHHH----HHHhhhcCCCeEEEEecCch
Q 022227           79 ------CTGVNIAVMVGGFPRKEGM---E---RKDVMSKNVSIYKAQA----SALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        79 ------~~~aDvVi~~ag~~~~~g~---~---r~dl~~~N~~i~~~i~----~~i~~~~~~~~~viv~sNP~  134 (300)
                            +.+.|+||++||.......   +   -.+.+..|+.....+.    +.+.+..  ..++|++|+..
T Consensus       100 ~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~  169 (272)
T 1yb1_A          100 KKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN--HGHIVTVASAA  169 (272)
T ss_dssp             HHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCCC
T ss_pred             HHHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEEechh
Confidence                  3378999999997542211   1   1345667776644444    4444432  34677777643

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=98.12  E-value=1.1e-05  Score=71.62  Aligned_cols=154  Identities=14%  Similarity=0.127  Sum_probs=86.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCC------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTD------   74 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~------   74 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|++.|..+   .++....++......   ...++.-..+      
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~   99 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGA-------HVLAWGRTD---GVKEVADEIADGGGSAEAVVADLADLEGAANVAE   99 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESST---HHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEcCHH---HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence            457899999999999999999999875       788998542   222222233221100   0000000000      


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           75 AVEACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                      ..+.+...|++|+.||......   .+.   ...+..|+.....+.+.    +.+..  ..++|++|+....        
T Consensus       100 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~IV~isS~~~~--------  169 (273)
T 3uf0_A          100 ELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG--SGRIVTIASMLSF--------  169 (273)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT--------
T ss_pred             HHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcchHhc--------
Confidence            1112347899999999764321   122   33566776665555554    44443  3468888765431        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                       .+.|....|+.++.-...+.+.+|.+++  +..|+
T Consensus       170 -~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~  202 (273)
T 3uf0_A          170 -QGGRNVAAYAASKHAVVGLTRALASEWA--GRGVG  202 (273)
T ss_dssp             -SCCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             -CCCCCChhHHHHHHHHHHHHHHHHHHHh--hcCcE
Confidence             1223222456666666677777787764  33454

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=98.12  E-value=9.6e-06  Score=71.04  Aligned_cols=154  Identities=16%  Similarity=0.154  Sum_probs=86.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh---
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA---   78 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a---   78 (300)
                      .+++.||||+|.+|.+++..|++.|.       +|+++|+++  ++++....++......   ...++.-..+..+.   
T Consensus        14 ~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~   84 (260)
T 2zat_A           14 NKVALVTASTDGIGLAIARRLAQDGA-------HVVVSSRKQ--ENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAM   84 (260)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence            46899999999999999999999875       789999863  3443332233221100   00000000011122   


Q ss_pred             ----cCCCcEEEEeCCCCCC--C--CCcH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           79 ----CTGVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        79 ----~~~aDvVi~~ag~~~~--~--g~~r---~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                          +.+.|++|+.||....  +  ..+.   .+.+..|+.....+.+.    +++..  ..++|++|+....       
T Consensus        85 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~-------  155 (260)
T 2zat_A           85 AVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRG--GGSVLIVSSVGAY-------  155 (260)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGT-------
T ss_pred             HHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEEechhhc-------
Confidence                2379999999997421  1  1222   34566777666555544    44432  3467777754321       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                        .+.|....|+.++.-...+.+.+++++.  +..|+
T Consensus       156 --~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~  188 (260)
T 2zat_A          156 --HPFPNLGPYNVSKTALLGLTKNLAVELA--PRNIR  188 (260)
T ss_dssp             --SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             --CCCCCchhHHHHHHHHHHHHHHHHHHhc--ccCeE
Confidence              1223222455566666667777777764  33454

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=98.12  E-value=9.2e-06  Score=72.06  Aligned_cols=154  Identities=16%  Similarity=0.142  Sum_probs=84.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc--cCCcccEEEeCChhhhc----
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--FPLLKGVVATTDAVEAC----   79 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~--~~~~~~v~~~~~~~~a~----   79 (300)
                      +++.||||+|.||..++..|++.|.       +|++.|+++  ++++....++....  .....++.-..+..+++    
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   92 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW-------SLVLTGRRE--ERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLP   92 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            6799999999999999999999875       789999863  44443333332110  00000100001122223    


Q ss_pred             ---CCCcEEEEeCCCCCC--C--CCcH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHC
Q 022227           80 ---TGVNIAVMVGGFPRK--E--GMER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        80 ---~~aDvVi~~ag~~~~--~--g~~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                         ...|++|+.||....  +  ..+.   ...+..|+..    ++.+.+.+.+... ..++|++|+-...         
T Consensus        93 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~-g~~IV~isS~~~~---------  162 (272)
T 2nwq_A           93 EEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGA-GASIVNLGSVAGK---------  162 (272)
T ss_dssp             GGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCT-TCEEEEECCGGGT---------
T ss_pred             HHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEeCCchhc---------
Confidence               345999999997532  1  1122   3356667665    4445555555432 2267777764431         


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      .+.|....|+.++.-...+.+.++.++.  +..|+
T Consensus       163 ~~~~~~~~Y~asKaa~~~l~~~la~el~--~~gIr  195 (272)
T 2nwq_A          163 WPYPGSHVYGGTKAFVEQFSLNLRCDLQ--GTGVR  195 (272)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHHHTTCT--TSCCE
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHhC--ccCeE
Confidence            1223222355555555566667776653  34454

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=98.11  E-value=8.8e-06  Score=72.42  Aligned_cols=157  Identities=13%  Similarity=0.157  Sum_probs=83.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhhc--
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC--   79 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a~--   79 (300)
                      .+++.||||+|.||.+++..|++.|.       +++++|... .+.++....++......   ...++.-..+..+++  
T Consensus        29 ~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~  100 (280)
T 4da9_A           29 RPVAIVTGGRRGIGLGIARALAASGF-------DIAITGIGD-AEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDA  100 (280)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCC-HHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC-------eEEEEeCCC-HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence            46799999999999999999999875       788988642 34444333333321100   000111111222222  


Q ss_pred             -----CCCcEEEEeCCCC--C-CC--CCcH---HHHHHhhHHHHHHH----HHHHhhhcC-CCeEEEEecCchhhHHHHH
Q 022227           80 -----TGVNIAVMVGGFP--R-KE--GMER---KDVMSKNVSIYKAQ----ASALEQHAA-PNCKVLVVANPANTNALIL  141 (300)
Q Consensus        80 -----~~aDvVi~~ag~~--~-~~--g~~r---~dl~~~N~~i~~~i----~~~i~~~~~-~~~~viv~sNP~~~~~~~~  141 (300)
                           ...|++|+.||..  . .+  ..+.   ...+..|+.....+    .+.+.+... +..++|++|+.....    
T Consensus       101 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~----  176 (280)
T 4da9_A          101 VVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM----  176 (280)
T ss_dssp             HHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC--------
T ss_pred             HHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc----
Confidence                 3789999999973  1 11  1122   23455676655444    444444321 134678777654321    


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                           +.|..-.|+.++.-...+.+.+|.++.  +..|+
T Consensus       177 -----~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~  208 (280)
T 4da9_A          177 -----TSPERLDYCMSKAGLAAFSQGLALRLA--ETGIA  208 (280)
T ss_dssp             --------CCHHHHHHHHHHHHHHHHHHHHHT--TTTEE
T ss_pred             -----CCCCccHHHHHHHHHHHHHHHHHHHHH--HhCcE
Confidence                 122222355566666677777888774  34454

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=98.11  E-value=2.1e-05  Score=69.01  Aligned_cols=150  Identities=15%  Similarity=0.109  Sum_probs=84.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV----   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~----   76 (300)
                      +.++|.||||+|.+|.+++..|++.|.       +|++.|+++  ++++....++......   ...++.-..+..    
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~   98 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGA-------RVVLTARDV--EKLRAVEREIVAAGGEAESHACDLSHSDAIAAFAT   98 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHH
Confidence            457899999999999999999998875       789999863  4454433333321100   000000000111    


Q ss_pred             ---hhcCCCcEEEEeCCCCCCC----CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHH
Q 022227           77 ---EACTGVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        77 ---~a~~~aDvVi~~ag~~~~~----g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                         +.+...|++|+.||.....    ..+.   .+.+..|+.....+.+.+    .+..  ..++|++|+....      
T Consensus        99 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~------  170 (262)
T 3rkr_A           99 GVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAK--RGHIINISSLAGK------  170 (262)
T ss_dssp             HHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CCEEEEECSSCSS------
T ss_pred             HHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CceEEEEechhhc------
Confidence               2234689999999973211    1222   345667766655555554    3332  3467887765431      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                         .+.+....++.++.-...+.+.+++++.
T Consensus       171 ---~~~~~~~~Y~asKaa~~~l~~~la~e~~  198 (262)
T 3rkr_A          171 ---NPVADGAAYTASKWGLNGLMTSAAEELR  198 (262)
T ss_dssp             ---CCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ---CCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence               1223222355555555566666777653

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.11  E-value=5e-06  Score=73.53  Aligned_cols=150  Identities=14%  Similarity=0.139  Sum_probs=81.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEE-EeC------Ch
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVV-ATT------DA   75 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~-~~~------~~   75 (300)
                      ++.+++.||||+|.+|.+++..|++.|.       +|+++|+++  ++++....++...... ..++. +..      +.
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~   73 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFAREGA-------KVTITGRHA--ERLEETRQQILAAGVS-EQNVNSVVADVTTDAGQ   73 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCC-GGGEEEEECCTTSHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcccC-CCceeEEecccCCHHHH
Confidence            3567899999999999999999998875       789999863  4444332233100000 00110 111      12


Q ss_pred             hhhcC-------CCcEEEEeCCCCCCC---CC----cH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCchh-
Q 022227           76 VEACT-------GVNIAVMVGGFPRKE---GM----ER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPAN-  135 (300)
Q Consensus        76 ~~a~~-------~aDvVi~~ag~~~~~---g~----~r---~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~~-  135 (300)
                      .++++       +.|++|+.||.....   ..    +.   ...+..|+.....+.+.+.+.-  .+ .++|++|+... 
T Consensus        74 ~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~  152 (278)
T 1spx_A           74 DEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASG  152 (278)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSS
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEeccccc
Confidence            23333       899999999875321   11    22   2346677666655555544331  11 36777776432 


Q ss_pred             hHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          136 TNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       136 ~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                      .         .+.|....|+.++.-...+.+.++.++
T Consensus       153 ~---------~~~~~~~~Y~~sK~a~~~~~~~la~e~  180 (278)
T 1spx_A          153 L---------HATPDFPYYSIAKAAIDQYTRNTAIDL  180 (278)
T ss_dssp             S---------SCCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c---------cCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            1         122322235555555556666677665

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=98.10  E-value=1.7e-05  Score=71.10  Aligned_cols=151  Identities=17%  Similarity=0.177  Sum_probs=87.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc----ccEEEeCC-----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL----KGVVATTD-----   74 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~----~~v~~~~~-----   74 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|++.|+++  ++++....++........    .++.-..+     
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~  110 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA-------NVAVAARSP--RELSSVTAELGELGAGNVIGVRLDVSDPGSCADAA  110 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSG--GGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHH
Confidence            456899999999999999999999875       799999864  444433334432110000    01000001     


Q ss_pred             --hhhhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHH
Q 022227           75 --AVEACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        75 --~~~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                        ..+.+...|++|+.||.....   ..+.   ...+..|+.....+.+.+    ++...  .++|++|+-....     
T Consensus       111 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~--g~iV~isS~~~~~-----  183 (293)
T 3rih_A          111 RTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGR--GRVILTSSITGPV-----  183 (293)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSS--CEEEEECCSBTTT-----
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--CEEEEEeChhhcc-----
Confidence              122234679999999975322   2222   345677776666655554    45432  4677777643210     


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                         .+.|....|+.++.-...+.+.+|++++
T Consensus       184 ---~~~~~~~~Y~asKaa~~~l~~~la~e~~  211 (293)
T 3rih_A          184 ---TGYPGWSHYGASKAAQLGFMRTAAIELA  211 (293)
T ss_dssp             ---BBCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ---CCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence               1233223456666666677777777764

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=98.10  E-value=1.4e-05  Score=70.75  Aligned_cols=155  Identities=14%  Similarity=0.140  Sum_probs=89.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh--
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a--   78 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|++.|+++  ++++....++......   ...++.-..+..+.  
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~   95 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA-------RILINGTDP--SRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFA   95 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEECCSCH--HHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence            456899999999999999999999875       789998863  4444443344321100   00111111112222  


Q ss_pred             -----cCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           79 -----CTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        79 -----~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i----~~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                           +...|++|+.||......   .+.   ...+..|+.....+    .+.+.+..  ..++|++|+....       
T Consensus        96 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iV~isS~~~~-------  166 (271)
T 4ibo_A           96 RLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRG--YGKIVNIGSLTSE-------  166 (271)
T ss_dssp             HHHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT-------
T ss_pred             HHHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEccHHhC-------
Confidence                 237899999999754221   222   23466776655555    44444443  3467887764421       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                        .+.|....|+.++.-...+.+.+|.+++  +..|+
T Consensus       167 --~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~  199 (271)
T 4ibo_A          167 --LARATVAPYTVAKGGIKMLTRAMAAEWA--QYGIQ  199 (271)
T ss_dssp             --SBCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             --CCCCCchhHHHHHHHHHHHHHHHHHHHh--hhCeE
Confidence              1223223455666666677777787764  34455

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=98.10  E-value=9.1e-06  Score=70.95  Aligned_cols=148  Identities=16%  Similarity=0.119  Sum_probs=83.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhh-------
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA-------   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a-------   78 (300)
                      +++.||||+|.+|.+++..|++.|.       +|++.|+++  ++++....++.........++.-..+..+.       
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   71 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH-------KVIATGRRQ--ERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAE   71 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            4789999999999999999999875       789998863  444322222211000000000000011122       


Q ss_pred             cCCCcEEEEeCCCCC--CC--CCcH---HHHHHhhHHHHHHHH----HHHhhhcCCCeEEEEecCchhhHHHHHHHHCCC
Q 022227           79 CTGVNIAVMVGGFPR--KE--GMER---KDVMSKNVSIYKAQA----SALEQHAAPNCKVLVVANPANTNALILKEFAPS  147 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~--~~--g~~r---~dl~~~N~~i~~~i~----~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~  147 (300)
                      +...|++|+.||...  .+  ..+.   ...+..|+.....+.    +.+.+..  ..++|++|+....         .+
T Consensus        72 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~---------~~  140 (248)
T 3asu_A           72 WCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN--HGHIINIGSTAGS---------WP  140 (248)
T ss_dssp             TCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGT---------SC
T ss_pred             CCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CceEEEEccchhc---------cC
Confidence            336899999999752  11  1222   345667765544444    4444443  2467888765431         12


Q ss_pred             CCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          148 IPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       148 ~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .|....|+.++.-...+.+.++.++.
T Consensus       141 ~~~~~~Y~asKaa~~~~~~~la~e~~  166 (248)
T 3asu_A          141 YAGGNVYGATKAFVRQFSLNLRTDLH  166 (248)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            33333456666666677777888764

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=98.10  E-value=1.1e-05  Score=71.04  Aligned_cols=118  Identities=17%  Similarity=0.115  Sum_probs=69.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEE-EeCC------hh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVV-ATTD------AV   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~-~~~~------~~   76 (300)
                      +.+++.||||+|.+|.+++..|++.|.       +|+++|+++  ++++....++.... . ..++. +..|      ..
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~-~-~~~~~~~~~D~~~~~~v~   74 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGA-------KVALVDWNL--EAGVQCKAALHEQF-E-PQKTLFIQCDVADQQQLR   74 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHTTTS-C-GGGEEEEECCTTSHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhhc-C-CCceEEEecCCCCHHHHH
Confidence            346899999999999999999998875       788998863  33332222222110 0 00110 1111      12


Q ss_pred             hh-------cCCCcEEEEeCCCCCCCCCcHHHHHHhhHH----HHHHHHHHHhhhcC-CCeEEEEecCch
Q 022227           77 EA-------CTGVNIAVMVGGFPRKEGMERKDVMSKNVS----IYKAQASALEQHAA-PNCKVLVVANPA  134 (300)
Q Consensus        77 ~a-------~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~----i~~~i~~~i~~~~~-~~~~viv~sNP~  134 (300)
                      ++       +...|++|+.||...  ..+-.+.+..|+.    ..+.+.+.+.+... +..++|++|+..
T Consensus        75 ~~~~~~~~~~g~id~lv~~Ag~~~--~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~  142 (267)
T 2gdz_A           75 DTFRKVVDHFGRLDILVNNAGVNN--EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA  142 (267)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCC--SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCC--hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCcc
Confidence            22       235799999999753  2233455667765    55666777765431 124677777644

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=98.10  E-value=1.3e-05  Score=70.24  Aligned_cols=151  Identities=18%  Similarity=0.156  Sum_probs=82.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh----
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA----   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a----   78 (300)
                      +++.||||+|.+|..++..|++.|.       +|++.|+++..+.++....++......   ...++.-..+..++    
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   75 (258)
T 3a28_C            3 KVAMVTGGAQGIGRGISEKLAADGF-------DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEA   75 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC-------EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence            5799999999999999999998875       788998864211133222233211100   00010000011222    


Q ss_pred             ---cCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEecCchhhHHHHHHHHC
Q 022227           79 ---CTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        79 ---~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~----~~~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                         +...|++|+.||......   .+.   ...+..|+.....+.+.+.    +... ..++|++|+....         
T Consensus        76 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~---------  145 (258)
T 3a28_C           76 AEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGV-KGKIINAASIAAI---------  145 (258)
T ss_dssp             HHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CCEEEEECCGGGT---------
T ss_pred             HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCC-CcEEEEECcchhc---------
Confidence               237899999999754221   122   3456677665555554443    3332 1467887765431         


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .+.|....|+.++.-...+.+.++.+++
T Consensus       146 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~  173 (258)
T 3a28_C          146 QGFPILSAYSTTKFAVRGLTQAAAQELA  173 (258)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            1233223455555555666777777764

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.09  E-value=4.8e-06  Score=83.84  Aligned_cols=104  Identities=19%  Similarity=0.225  Sum_probs=68.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhh---h-----hcc------CCcccE
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELV---D-----AAF------PLLKGV   69 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~---~-----~~~------~~~~~v   69 (300)
                      +.+||+||| +|.+|+.++..|+..|+       +|+++|+++  ++++.-...+.   +     ...      ....++
T Consensus       313 ~i~kV~VIG-aG~MG~~iA~~la~aG~-------~V~l~D~~~--~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i  382 (715)
T 1wdk_A          313 DVKQAAVLG-AGIMGGGIAYQSASKGT-------PILMKDINE--HGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGI  382 (715)
T ss_dssp             CCSSEEEEC-CHHHHHHHHHHHHHTTC-------CEEEECSSH--HHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHE
T ss_pred             cCCEEEEEC-CChhhHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCe
Confidence            346899999 79999999999998875       799999974  44432100010   0     000      012346


Q ss_pred             EEeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           70 VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        70 ~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                      +.+++. +++++||+||.+.              ..+..+.+.+.+.+.+++++++  |++||.+
T Consensus       383 ~~~~d~-~~~~~aDlVIeaV--------------~e~~~vk~~v~~~l~~~~~~~~--IlasntS  430 (715)
T 1wdk_A          383 RPTLSY-GDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDA--ILASNTS  430 (715)
T ss_dssp             EEESSS-TTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTC--EEEECCS
T ss_pred             EEECCH-HHHCCCCEEEEcC--------------CCCHHHHHHHHHHHHhhCCCCe--EEEeCCC
Confidence            777776 7899999999984              1234455667777888887775  4466654

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=98.09  E-value=8.3e-06  Score=71.39  Aligned_cols=156  Identities=14%  Similarity=0.102  Sum_probs=80.9

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh-------hhhhhhhhccCCcccEEEeC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG-------VKMELVDAAFPLLKGVVATT   73 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g-------~~~dl~~~~~~~~~~v~~~~   73 (300)
                      |+.+.+++.||||+|.||.+++..|++.|.       ++++.|.+. ++.++.       ...|+.+....  ..+  . 
T Consensus         5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~-~~~~~~~~~~~~~~~~D~~~~~~v--~~~--~-   71 (257)
T 3tl3_A            5 MEIRDAVAVVTGGASGLGLATTKRLLDAGA-------QVVVLDIRG-EDVVADLGDRARFAAADVTDEAAV--ASA--L-   71 (257)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHHTC-------EEEEEESSC-HHHHHHTCTTEEEEECCTTCHHHH--HHH--H-
T ss_pred             ceecCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCch-HHHHHhcCCceEEEECCCCCHHHH--HHH--H-
Confidence            445567899999999999999999999875       788998853 221110       11222221100  000  0 


Q ss_pred             ChhhhcCCCcEEEEeCCCCCCC-------CCc---HHHHHHhhHHHHHHHHHHHhhhc----------CCCeEEEEecCc
Q 022227           74 DAVEACTGVNIAVMVGGFPRKE-------GME---RKDVMSKNVSIYKAQASALEQHA----------APNCKVLVVANP  133 (300)
Q Consensus        74 ~~~~a~~~aDvVi~~ag~~~~~-------g~~---r~dl~~~N~~i~~~i~~~i~~~~----------~~~~~viv~sNP  133 (300)
                      +..+.+...|++|+.||.....       ..+   -...+..|+.....+.+.+.++-          .+..++|++|+.
T Consensus        72 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~  151 (257)
T 3tl3_A           72 DLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASV  151 (257)
T ss_dssp             HHHHHHSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCC
T ss_pred             HHHHHhCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcch
Confidence            0011134899999999864210       122   23456778766666655554431          113567877764


Q ss_pred             hhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          134 ANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      .....         .|....|+.++.-...+.+.+|.++.  +..|+
T Consensus       152 ~~~~~---------~~~~~~Y~asKaa~~~~~~~la~e~~--~~gI~  187 (257)
T 3tl3_A          152 AAFDG---------QIGQAAYSASKGGVVGMTLPIARDLA--SHRIR  187 (257)
T ss_dssp             C--CC---------HHHHHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             hhcCC---------CCCCccHHHHHHHHHHHHHHHHHHhc--ccCcE
Confidence            43110         01001233444444556667777764  33454

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=98.09  E-value=8.4e-06  Score=72.43  Aligned_cols=158  Identities=18%  Similarity=0.187  Sum_probs=88.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhhc
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC   79 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a~   79 (300)
                      .+.+++.||||+|.||.+++..|++.|.       +|++.|+++  ++++....++......   ...++.-..+..+.+
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~  100 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGA-------QVAVAARHS--DALQVVADEIAGVGGKALPIRCDVTQPDQVRGML  100 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESSG--GGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence            3457899999999999999999999875       799999863  4444433334321100   000111011122222


Q ss_pred             -------CCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHH----HHHhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           80 -------TGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQA----SALEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        80 -------~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~----~~i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                             ...|++|+.||......   .+.   ...+..|+.....+.    +.+.+... ..++|++++.....     
T Consensus       101 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-~g~iv~isS~~~~~-----  174 (276)
T 3r1i_A          101 DQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGL-GGTIITTASMSGHI-----  174 (276)
T ss_dssp             HHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGTS-----
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcEEEEECchHhcc-----
Confidence                   37899999999754221   122   234566765554444    44444432 24677777544210     


Q ss_pred             HHCCCCCCC-cEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          143 EFAPSIPAK-NITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       143 ~~~~~~p~~-~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                         ...++. ..|+.++.-...+.+.+|++++  +..|+
T Consensus       175 ---~~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIr  208 (276)
T 3r1i_A          175 ---INIPQQVSHYCTSKAAVVHLTKAMAVELA--PHQIR  208 (276)
T ss_dssp             ---CCCSSCCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             ---cCCCCCcchHHHHHHHHHHHHHHHHHHHh--hcCcE
Confidence               112211 2355666666677777887764  33454

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.09  E-value=1.6e-05  Score=76.09  Aligned_cols=118  Identities=18%  Similarity=0.183  Sum_probs=70.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhc--ccCCCCCCeEEEEEecCCchhhhhhhhh-----------hhhhhccCCcccEEE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARG--VMLGTDQPVILHMLDIPPAAEALNGVKM-----------ELVDAAFPLLKGVVA   71 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~--~~~~~~~~~~l~L~D~~~~~~~l~g~~~-----------dl~~~~~~~~~~v~~   71 (300)
                      +|||+|+| +|.||..++..|+..  |.       +|+++|+++  ++++....           ++....  ....+..
T Consensus         5 ~mkI~VIG-~G~mG~~lA~~La~~g~G~-------~V~~~d~~~--~~~~~l~~g~~~i~e~~l~~~~~~~--~~~~~~~   72 (467)
T 2q3e_A            5 IKKICCIG-AGYVGGPTCSVIAHMCPEI-------RVTVVDVNE--SRINAWNSPTLPIYEPGLKEVVESC--RGKNLFF   72 (467)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHHCTTS-------EEEEECSCH--HHHHHHTSSSCSSCCTTHHHHHHHH--BTTTEEE
T ss_pred             ccEEEEEC-CCHHHHHHHHHHHhcCCCC-------EEEEEECCH--HHHHHHhCCCCCcCCCCHHHHHHHh--hcCCEEE
Confidence            47999999 799999999999887  43       799999863  44432110           000000  0124667


Q ss_pred             eCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEe-cCchh
Q 022227           72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVV-ANPAN  135 (300)
Q Consensus        72 ~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~-sNP~~  135 (300)
                      +++..+++++||+||++...|........+ ...+...+.+.++.+.++.+++..+|.. |+|..
T Consensus        73 t~~~~e~~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g  136 (467)
T 2q3e_A           73 STNIDDAIKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVR  136 (467)
T ss_dssp             ESCHHHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTT
T ss_pred             ECCHHHHHhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCch
Confidence            778888899999999987655422110000 0123344556666666654445544444 45654

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=98.09  E-value=2.4e-05  Score=69.36  Aligned_cols=152  Identities=14%  Similarity=0.098  Sum_probs=86.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc----------hhhhhhhhhhhhhhccC---CcccEE
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA----------AEALNGVKMELVDAAFP---LLKGVV   70 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~----------~~~l~g~~~dl~~~~~~---~~~~v~   70 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|++.|++++          .+.++.....+......   ...+++
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~   81 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA-------DIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVK   81 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence            457899999999999999999999875       7999998532          12222221122111100   000110


Q ss_pred             EeCChhhh-------cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCc
Q 022227           71 ATTDAVEA-------CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANP  133 (300)
Q Consensus        71 ~~~~~~~a-------~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP  133 (300)
                      -..+..+.       +...|++|+.||.....   ..+.   ...+..|+.....+.+.    +.+..  ..++|++|+.
T Consensus        82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~  159 (281)
T 3s55_A           82 DRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRN--YGRIVTVSSM  159 (281)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCG
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECCh
Confidence            00111222       33789999999975421   2222   34566777666665555    44443  3578888765


Q ss_pred             hhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          134 ANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ...         .+.|....|+.++.-...+.+.+|.+++
T Consensus       160 ~~~---------~~~~~~~~Y~asK~a~~~~~~~la~e~~  190 (281)
T 3s55_A          160 LGH---------SANFAQASYVSSKWGVIGLTKCAAHDLV  190 (281)
T ss_dssp             GGG---------SCCTTCHHHHHHHHHHHHHHHHHHHHTG
T ss_pred             hhc---------CCCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence            431         1223223455566666677777888764

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=98.09  E-value=4e-05  Score=67.60  Aligned_cols=154  Identities=15%  Similarity=0.098  Sum_probs=90.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh---
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE---   77 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~---   77 (300)
                      +.+++.||||+|.||.+++..|++.|.       ++++.|.+. .+.++....++......   ...++.-..+..+   
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~-------~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~   88 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA-------KVVVNYANS-TKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFD   88 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCC-HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence            346899999999999999999999875       688877653 33333333333221100   0001000001112   


Q ss_pred             ----hcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCC
Q 022227           78 ----ACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS  147 (300)
Q Consensus        78 ----a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~  147 (300)
                          .+...|++|+.||......   .+.   ...+..|+.....+.+.+.++-.+..++|++|+....       . .+
T Consensus        89 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~-------~-~~  160 (270)
T 3is3_A           89 QAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSK-------D-FS  160 (270)
T ss_dssp             HHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTT-------T-CC
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhc-------c-CC
Confidence                2337899999999754221   122   3457788888888887777664334567777764411       0 12


Q ss_pred             CCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          148 IPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       148 ~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .|....|+.++.-...+.+.++.+++
T Consensus       161 ~~~~~~Y~asKaa~~~~~~~la~e~~  186 (270)
T 3is3_A          161 VPKHSLYSGSKGAVDSFVRIFSKDCG  186 (270)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHhc
Confidence            33333456666666677777888775

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=98.09  E-value=2.3e-06  Score=72.04  Aligned_cols=143  Identities=14%  Similarity=0.128  Sum_probs=84.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC---CC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT---GV   82 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~---~a   82 (300)
                      ++|.||||+|++|++++..|++.         +|+++|+++  ++++....++.. . ....++.-..+..++++   +.
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~---------~V~~~~r~~--~~~~~~~~~~~~-~-~~~~D~~~~~~~~~~~~~~~~i   67 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH---------DLLLSGRRA--GALAELAREVGA-R-ALPADLADELEAKALLEEAGPL   67 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS---------EEEEECSCH--HHHHHHHHHHTC-E-ECCCCTTSHHHHHHHHHHHCSE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC---------CEEEEECCH--HHHHHHHHhccC-c-EEEeeCCCHHHHHHHHHhcCCC
Confidence            47999999999999999988753         588888853  333322221211 0 00001100112334444   89


Q ss_pred             cEEEEeCCCCCCC------CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEee
Q 022227           83 NIAVMVGGFPRKE------GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL  156 (300)
Q Consensus        83 DvVi~~ag~~~~~------g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~  156 (300)
                      |+||++||.....      .++....+..|+.....+.+.+.+..  ..++|++|+....       .  +.+....++.
T Consensus        68 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~iv~~sS~~~~-------~--~~~~~~~Y~~  136 (207)
T 2yut_A           68 DLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQK--GARAVFFGAYPRY-------V--QVPGFAAYAA  136 (207)
T ss_dssp             EEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEE--EEEEEEECCCHHH-------H--SSTTBHHHHH
T ss_pred             CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcC--CcEEEEEcChhhc-------c--CCCCcchHHH
Confidence            9999999875321      12334567889999999998885442  2467777765421       1  1232334555


Q ss_pred             ehhhHHHHHHHHHHHc
Q 022227          157 TRLDHNRALGQISEKL  172 (300)
Q Consensus       157 t~ld~~R~~~~la~~l  172 (300)
                      ++.....+...+++++
T Consensus       137 sK~a~~~~~~~~~~~~  152 (207)
T 2yut_A          137 AKGALEAYLEAARKEL  152 (207)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6665566666677665

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=98.09  E-value=1.2e-05  Score=72.10  Aligned_cols=151  Identities=13%  Similarity=0.096  Sum_probs=87.9

Q ss_pred             CCcEEEEEcCCCh--HHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh--
Q 022227            4 EPVRVLVTGAAGQ--IGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV--   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~--vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~--   76 (300)
                      +.+++.||||+|+  ||.+++..|++.|.       .|++.|.++  +..+ ...++......   ...+++-..+..  
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~-~~~~~~~~~~~~~~~~~Dv~d~~~v~~~   99 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGA-------ELAFTYQGD--ALKK-RVEPLAEELGAFVAGHCDVADAASIDAV   99 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTC-------EEEEEECSH--HHHH-HHHHHHHHHTCEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-------EEEEEcCCH--HHHH-HHHHHHHhcCCceEEECCCCCHHHHHHH
Confidence            3468999999988  99999999999875       788888763  1111 11112111000   000000000111  


Q ss_pred             -----hhcCCCcEEEEeCCCCC-----CC--CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           77 -----EACTGVNIAVMVGGFPR-----KE--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        77 -----~a~~~aDvVi~~ag~~~-----~~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                           +.+...|++|+.||...     .+  ..+.   ...+..|+.....+.+.+.++-.+..++|++|+....     
T Consensus       100 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~-----  174 (293)
T 3grk_A          100 FETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAE-----  174 (293)
T ss_dssp             HHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGT-----
T ss_pred             HHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhc-----
Confidence                 22347899999999763     11  1222   3457788888777877776654334578888765431     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                          .+.|....|+.++.-...+.+.+|.+++
T Consensus       175 ----~~~~~~~~Y~asKaa~~~l~~~la~e~~  202 (293)
T 3grk_A          175 ----KVMPNYNVMGVAKAALEASVKYLAVDLG  202 (293)
T ss_dssp             ----SBCTTTTHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ----cCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence                1233333456666666677777887764

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.09  E-value=1.3e-05  Score=71.18  Aligned_cols=151  Identities=13%  Similarity=0.153  Sum_probs=84.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEE-EeCC------h
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVV-ATTD------A   75 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~-~~~~------~   75 (300)
                      ++.+++.||||+|.+|.+++..|++.|.       +|+++|+++  ++++....++...... ..++. +..|      .
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v   73 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGA-------NVTITGRSS--ERLEETRQIILKSGVS-EKQVNSVVADVTTEDGQ   73 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTTCC-GGGEEEEECCTTSHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHcCCC-CcceEEEEecCCCHHHH
Confidence            4567899999999999999999998875       789999863  4444333333211000 00111 1111      1


Q ss_pred             hhh-------cCCCcEEEEeCCCCCCCC-------Cc---HHHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEecCchhhH
Q 022227           76 VEA-------CTGVNIAVMVGGFPRKEG-------ME---RKDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPANTN  137 (300)
Q Consensus        76 ~~a-------~~~aDvVi~~ag~~~~~g-------~~---r~dl~~~N~~i~~~i~~~i~~~~~-~~~~viv~sNP~~~~  137 (300)
                      .++       +...|++|+.||......       .+   -...+..|+.....+.+.+.++-. .+.++|++|+.... 
T Consensus        74 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~-  152 (280)
T 1xkq_A           74 DQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAG-  152 (280)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGS-
T ss_pred             HHHHHHHHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCcccc-
Confidence            122       236899999999753211       12   234566777666666555543210 01367777764321 


Q ss_pred             HHHHHHHCCCC-CCCcEEeeehhhHHHHHHHHHHHc
Q 022227          138 ALILKEFAPSI-PAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       138 ~~~~~~~~~~~-p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                              .+. |....|+.++.-...+.+.++.++
T Consensus       153 --------~~~~~~~~~Y~asK~a~~~~~~~la~e~  180 (280)
T 1xkq_A          153 --------PQAQPDFLYYAIAKAALDQYTRSTAIDL  180 (280)
T ss_dssp             --------SSCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------CCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence                    112 322245555555556666677665

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=98.08  E-value=6.3e-06  Score=71.99  Aligned_cols=159  Identities=11%  Similarity=-0.009  Sum_probs=81.2

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc----ccEEEeCChhh
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL----KGVVATTDAVE   77 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~----~~v~~~~~~~~   77 (300)
                      +++.++|.||||+|++|.+++..|++.|.       +|+++|++..  .......++........    .++.-..+..+
T Consensus        11 ~~~~k~vlITGasggiG~~~a~~l~~~G~-------~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~   81 (265)
T 1h5q_A           11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGA-------NVAVIYRSAA--DAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTK   81 (265)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTE-------EEEEEESSCT--THHHHHHHHHHHHTCCEEEEECCTTCHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-------eEEEEeCcch--hhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHH
Confidence            34557899999999999999999998875       7899988532  22111122211100000    00000001111


Q ss_pred             -------hcCCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHHHHHHHHHHhhh----cCCCeEEEEecCchhhHHHH
Q 022227           78 -------ACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQH----AAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        78 -------a~~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~----~~~~~~viv~sNP~~~~~~~  140 (300)
                             .+...|++|+.||......   .+   -...+..|+.....+.+.+.+.    .. ..++|++|.........
T Consensus        82 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~~~~~  160 (265)
T 1h5q_A           82 TIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQ-KGSIVVTSSMSSQIINQ  160 (265)
T ss_dssp             HHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTSCCE
T ss_pred             HHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCC-CceEEEeCCchhhcccc
Confidence                   2335899999999754221   12   2334667776666666555433    22 24677777543210000


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                        ......++...++.++.-...+.+.+++++
T Consensus       161 --~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~  190 (265)
T 1h5q_A          161 --SSLNGSLTQVFYNSSKAACSNLVKGLAAEW  190 (265)
T ss_dssp             --EETTEECSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --ccccccccccccHHHHHHHHHHHHHHHHHH
Confidence              000000001234455555556666677665

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=98.08  E-value=7.8e-06  Score=71.64  Aligned_cols=156  Identities=9%  Similarity=0.067  Sum_probs=82.6

Q ss_pred             CCC--CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCCh
Q 022227            1 MAK--EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDA   75 (300)
Q Consensus         1 m~~--~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~   75 (300)
                      |++  .++++.||||+|.+|.+++..|++.|.       ++++.+.+. .+.++.....+......   ...++.-..+.
T Consensus         1 M~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v   72 (264)
T 3i4f_A            1 MSLGRFVRHALITAGTKGLGKQVTEKLLAKGY-------SVTVTYHSD-TTAMETMKETYKDVEERLQFVQADVTKKEDL   72 (264)
T ss_dssp             -----CCCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHTGGGGGGEEEEECCTTSHHHH
T ss_pred             CCcccccCEEEEeCCCchhHHHHHHHHHHCCC-------EEEEEcCCC-hHHHHHHHHHHHhcCCceEEEEecCCCHHHH
Confidence            544  356799999999999999999999875       688887653 22222221111111000   00010000112


Q ss_pred             hhh-------cCCCcEEEEeCCC--CCC-C--CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhh
Q 022227           76 VEA-------CTGVNIAVMVGGF--PRK-E--GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANT  136 (300)
Q Consensus        76 ~~a-------~~~aDvVi~~ag~--~~~-~--g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~  136 (300)
                      .++       +...|++|+.||.  ... +  ..+.   ...+..|+.....+.+.+    ++..  ..++|++|.....
T Consensus        73 ~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~iss~~~~  150 (264)
T 3i4f_A           73 HKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQN--FGRIINYGFQGAD  150 (264)
T ss_dssp             HHHHHHHHHHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTTGG
T ss_pred             HHHHHHHHHHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC--CCeEEEEeechhc
Confidence            222       2378999999994  221 1  1122   345667766666665554    5553  3467777754211


Q ss_pred             HHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       137 ~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                            . ..+.+....++.++.-...+.+.++.++.
T Consensus       151 ------~-~~~~~~~~~Y~asKaa~~~~~~~la~e~~  180 (264)
T 3i4f_A          151 ------S-APGWIYRSAFAAAKVGLVSLTKTVAYEEA  180 (264)
T ss_dssp             ------G-CCCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ------c-cCCCCCCchhHHHHHHHHHHHHHHHHHhh
Confidence                  0 12333333455666555667777777753

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=98.08  E-value=7.8e-05  Score=65.79  Aligned_cols=151  Identities=15%  Similarity=0.150  Sum_probs=85.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh--
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE--   77 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~--   77 (300)
                      ++.+++.||||+|.+|.+++..|++.|.       +|++.|+++  ++++....++......   ...++.-..+..+  
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   89 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGA-------RVYTCSRNE--KELDECLEIWREKGLNVEGSVCDLLSRTERDKLM   89 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHH
Confidence            3457899999999999999999998875       789999863  4443332233221100   0000000001111  


Q ss_pred             -----hc-CCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHH
Q 022227           78 -----AC-TGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        78 -----a~-~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                           .+ ...|++|+.||.....   ..+.   ...+..|+.....+.+.+    ++..  ..++|++|+....     
T Consensus        90 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~-----  162 (273)
T 1ae1_A           90 QTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ--NGNVIFLSSIAGF-----  162 (273)
T ss_dssp             HHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--SEEEEEECCGGGT-----
T ss_pred             HHHHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcCHhhc-----
Confidence                 22 5789999999975321   1222   334566766655555544    4443  3467888765431     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                          .+.|....|+.++.-...+.+.++.++.
T Consensus       163 ----~~~~~~~~Y~asK~a~~~~~~~la~e~~  190 (273)
T 1ae1_A          163 ----SALPSVSLYSASKGAINQMTKSLACEWA  190 (273)
T ss_dssp             ----SCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ----CCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence                1223223455555555666777777763

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=98.08  E-value=2e-05  Score=67.99  Aligned_cols=156  Identities=16%  Similarity=0.172  Sum_probs=85.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh---
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA---   78 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a---   78 (300)
                      .++|.||||+|++|.+++..|++.|...++...+|++.++++  ++++....++......   ...++.-..+..++   
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~   79 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA--ADLEKISLECRAEGALTDTITADISDMADVRRLTTH   79 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH--HHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCH--HHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHH
Confidence            357999999999999999999987742111122588888753  4443333333211100   00000000011222   


Q ss_pred             ----cCCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           79 ----CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        79 ----~~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~----~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                          +...|+||++||......   .+   ....+..|+.....+.+.+.    +..  ..++|++|+....        
T Consensus        80 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~--------  149 (244)
T 2bd0_A           80 IVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH--SGHIFFITSVAAT--------  149 (244)
T ss_dssp             HHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT--------
T ss_pred             HHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCEEEEEecchhc--------
Confidence                237999999999754221   12   23456677766666655543    332  3467887765431        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                       .+.|....++.++.....+.+.++.++.
T Consensus       150 -~~~~~~~~Y~~sK~a~~~~~~~la~e~~  177 (244)
T 2bd0_A          150 -KAFRHSSIYCMSKFGQRGLVETMRLYAR  177 (244)
T ss_dssp             -SCCTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -CCCCCCchhHHHHHHHHHHHHHHHHHhh
Confidence             1233333455666666666666776654

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=98.07  E-value=1.2e-05  Score=70.29  Aligned_cols=157  Identities=11%  Similarity=0.038  Sum_probs=89.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhhc
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC   79 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a~   79 (300)
                      .+.+++.||||+|.||.+++..|++.|.       +|++.|+++  ++++....++......   ...+++-..+..+.+
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~   75 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGF-------TVFAGRRNG--EKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFL   75 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTC-------EEEEEESSG--GGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHH
Confidence            3567899999999999999999999875       799999864  4554443344321100   000110011122222


Q ss_pred             ------CCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHH----HHHHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           80 ------TGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKA----QASALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        80 ------~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~----i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                            ...|++|+.||.....   ..+.   ...+..|+.....    +.+.+++..  ..++|++|+....       
T Consensus        76 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~-------  146 (252)
T 3h7a_A           76 NAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG--QGKIFFTGATASL-------  146 (252)
T ss_dssp             HHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEEGGGT-------
T ss_pred             HHHHhhCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECCHHHc-------
Confidence                  2679999999975422   1222   2346667655444    444455543  3467777754421       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEE
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN  181 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~  181 (300)
                        .+.|....|+.++.-...+.+.++.+++  +..|+.
T Consensus       147 --~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v  180 (252)
T 3h7a_A          147 --RGGSGFAAFASAKFGLRAVAQSMARELM--PKNIHV  180 (252)
T ss_dssp             --CCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred             --CCCCCCccHHHHHHHHHHHHHHHHHHhh--hcCCEE
Confidence              1233223455566666667777777764  345653

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=98.07  E-value=5.3e-06  Score=72.70  Aligned_cols=156  Identities=14%  Similarity=0.067  Sum_probs=82.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEeCChhhhcC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAVEACT   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~~~~~a~~   80 (300)
                      +.++|+||||+|++|++++..|++.|.-    ..+|+++|++.  ++++. ..++.....   ....++.-..+..++++
T Consensus        20 ~~k~vlITGasggIG~~la~~L~~~G~~----~~~V~~~~r~~--~~~~~-~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~   92 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKALLNLPQP----PQHLFTTCRNR--EQAKE-LEDLAKNHSNIHILEIDLRNFDAYDKLVA   92 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSC----CSEEEEEESCT--TSCHH-HHHHHHHCTTEEEEECCTTCGGGHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhcCCC----CcEEEEEecCh--hhhHH-HHHhhccCCceEEEEecCCChHHHHHHHH
Confidence            3468999999999999999999987610    01789998864  22221 112211100   00011111112233333


Q ss_pred             ---------CCcEEEEeCCCCC-CC---CCc---HHHHHHhhHHHHHHHHHHHhhh----------cC---CCeEEEEec
Q 022227           81 ---------GVNIAVMVGGFPR-KE---GME---RKDVMSKNVSIYKAQASALEQH----------AA---PNCKVLVVA  131 (300)
Q Consensus        81 ---------~aDvVi~~ag~~~-~~---g~~---r~dl~~~N~~i~~~i~~~i~~~----------~~---~~~~viv~s  131 (300)
                               ..|++|++||... ..   ..+   -...+..|+.....+.+.+.+.          ..   +..++|++|
T Consensus        93 ~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~is  172 (267)
T 1sny_A           93 DIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMS  172 (267)
T ss_dssp             HHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEEC
T ss_pred             HHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEe
Confidence                     6999999999754 11   112   2335666766666665555433          10   024678877


Q ss_pred             CchhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          132 NPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       132 NP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                      +......      .+..+....++.++.....+...+++++
T Consensus       173 S~~~~~~------~~~~~~~~~Y~~sK~a~~~~~~~la~e~  207 (267)
T 1sny_A          173 SILGSIQ------GNTDGGMYAYRTSKSALNAATKSLSVDL  207 (267)
T ss_dssp             CGGGCST------TCCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccc------CCCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            6543110      0001122235555555566666677665

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=98.07  E-value=5.4e-05  Score=66.92  Aligned_cols=157  Identities=17%  Similarity=0.127  Sum_probs=84.4

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch-h----hhhhhhhhhhhhccC---CcccEEEe
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-E----ALNGVKMELVDAAFP---LLKGVVAT   72 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~-~----~l~g~~~dl~~~~~~---~~~~v~~~   72 (300)
                      |+++.+++.||||+|.||..++..|++.|.       +|++.|++... +    .++....++......   ...++.-.
T Consensus         2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   74 (274)
T 3e03_A            2 LTLSGKTLFITGASRGIGLAIALRAARDGA-------NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREE   74 (274)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCH
Confidence            566778999999999999999999999875       78999986421 0    122111122111000   00000000


Q ss_pred             CCh-------hhhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchh
Q 022227           73 TDA-------VEACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        73 ~~~-------~~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~  135 (300)
                      .+.       .+.+...|++|+.||......   .+.   ...+..|+.....+.+.+    .+..  ..++|++|+...
T Consensus        75 ~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~  152 (274)
T 3e03_A           75 DQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAP--NPHILTLAPPPS  152 (274)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSS--SCEEEECCCCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcC--CceEEEECChHh
Confidence            011       122347899999999753221   222   335667776665555554    3332  346788776543


Q ss_pred             hHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          136 TNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       136 ~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .....       .|....|+.++.-...+.+.+|.+++
T Consensus       153 ~~~~~-------~~~~~~Y~asKaal~~l~~~la~e~~  183 (274)
T 3e03_A          153 LNPAW-------WGAHTGYTLAKMGMSLVTLGLAAEFG  183 (274)
T ss_dssp             CCHHH-------HHHCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             cCCCC-------CCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            22100       00011234444445566667777764

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=98.07  E-value=2.5e-05  Score=68.86  Aligned_cols=150  Identities=11%  Similarity=0.117  Sum_probs=84.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhh-hccC---CcccEEEeCChhhh-
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD-AAFP---LLKGVVATTDAVEA-   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~-~~~~---~~~~v~~~~~~~~a-   78 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|+++|+++  ++++....++.. ....   ...++.-..+..++ 
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~   90 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGC-------SVVVASRNL--EEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLL   90 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence            346899999999999999999999875       789998863  444333333311 0000   00010000011122 


Q ss_pred             ------cCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCch-hhHHHHH
Q 022227           79 ------CTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPA-NTNALIL  141 (300)
Q Consensus        79 ------~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~-~~~~~~~  141 (300)
                            +...|++|+.||......   .+.   ...+..|+.....+.+.+    ++..  ..++|++|+.. ..     
T Consensus        91 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~-----  163 (267)
T 1vl8_A           91 EAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD--NPSIINIGSLTVEE-----  163 (267)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS--SCEEEEECCGGGTC-----
T ss_pred             HHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEECCcchhc-----
Confidence                  337899999999754221   122   345667776665555544    3332  24677777643 21     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                          .+.|....|+.++.-...+.+.++++++
T Consensus       164 ----~~~~~~~~Y~asK~a~~~~~~~la~e~~  191 (267)
T 1vl8_A          164 ----VTMPNISAYAASKGGVASLTKALAKEWG  191 (267)
T ss_dssp             ----CCSSSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ----cCCCCChhHHHHHHHHHHHHHHHHHHhc
Confidence                1223222355556556667777777763

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=98.06  E-value=1.1e-05  Score=71.32  Aligned_cols=151  Identities=19%  Similarity=0.184  Sum_probs=88.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh---hhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG---VKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g---~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|++.|++.  +.+..   ...|+.+....  ..  ......+.+.
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~Dv~~~~~~--~~--~~~~~~~~~g   93 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGA-------RVAVADRAV--AGIAADLHLPGDLREAAYA--DG--LPGAVAAGLG   93 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEECSSCC--TTSCCSEECCCCTTSHHHH--HH--HHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHhhhccCcCCCCHHHH--HH--HHHHHHHhcC
Confidence            456899999999999999999999875       788998864  22211   12333332200  00  0001233456


Q ss_pred             CCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHHHHCCCCCC
Q 022227           81 GVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEFAPSIPA  150 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~  150 (300)
                      ..|++|+.||......   .+.   ...+..|+.....+.+.+    ++..  ..++|++|+....         .+.|.
T Consensus        94 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~---------~~~~~  162 (266)
T 3uxy_A           94 RLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAG--GGAIVNVASCWGL---------RPGPG  162 (266)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCSBTT---------BCCTT
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECCHHhC---------CCCCC
Confidence            8999999999754211   122   334667776665555554    5543  3467887765431         12232


Q ss_pred             CcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          151 KNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       151 ~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      ...|+.++.-...+.+.++.+++  +..|+
T Consensus       163 ~~~Y~asKaa~~~l~~~la~e~~--~~gI~  190 (266)
T 3uxy_A          163 HALYCLTKAALASLTQCMGMDHA--PQGIR  190 (266)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhh--hcCcE
Confidence            22456666666677777787764  33454

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=98.06  E-value=1.3e-05  Score=69.58  Aligned_cols=156  Identities=17%  Similarity=0.151  Sum_probs=85.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh--
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a--   78 (300)
                      +.+++.||||+|.+|..++..|++.|.       ++++.+... .++++....++......   ...++.-..+..++  
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-------~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   74 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGA-------NVVVNYAGN-EQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVK   74 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence            456899999999999999999998875       788888721 23443332233221100   00010000111222  


Q ss_pred             -----cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           79 -----CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        79 -----~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                           +...|++|+.||.....   ..+.   ...+..|+..    ++.+.+.+++..  ..++|++|+....       
T Consensus        75 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~-------  145 (246)
T 2uvd_A           75 QTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR--HGRIVNIASVVGV-------  145 (246)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHH-------
T ss_pred             HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECCHHhc-------
Confidence                 23799999999975421   1122   3456677766    555555555543  2467887764421       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      .  +.|....|+.++.-...+.+.+++++.  +..|+
T Consensus       146 ~--~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~  178 (246)
T 2uvd_A          146 T--GNPGQANYVAAKAGVIGLTKTSAKELA--SRNIT  178 (246)
T ss_dssp             H--CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             C--CCCCCchHHHHHHHHHHHHHHHHHHhh--hcCeE
Confidence            1  123222345555555556666676653  33454

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=98.06  E-value=1.8e-05  Score=69.65  Aligned_cols=153  Identities=14%  Similarity=0.095  Sum_probs=87.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-c----ccEEEeCC---
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-L----KGVVATTD---   74 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-~----~~v~~~~~---   74 (300)
                      .+.+++.||||+|.||.+++..|++.|.       .|++.|+++  ++++....++....... .    .+++-..+   
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~   76 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGA-------AVAFCARDG--ERLRAAESALRQRFPGARLFASVCDVLDALQVRA   76 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHH
Confidence            3457899999999999999999999875       789999863  44444433443211000 0    01100001   


Q ss_pred             ----hhhhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCchhhHHHHHH
Q 022227           75 ----AVEACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILK  142 (300)
Q Consensus        75 ----~~~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~~~~~~~~~  142 (300)
                          ..+.+...|++|+.||.....   ..+.   ...+..|+.....+.+.+..+-  .+..++|++|+....      
T Consensus        77 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~------  150 (265)
T 3lf2_A           77 FAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLAS------  150 (265)
T ss_dssp             HHHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGT------
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccC------
Confidence                112234689999999975321   2222   3456778777666666554321  113567777754431      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                         .+.|....|+.++.-...+.+.+|.+++
T Consensus       151 ---~~~~~~~~Y~asKaa~~~l~~~la~e~~  178 (265)
T 3lf2_A          151 ---QPEPHMVATSAARAGVKNLVRSMAFEFA  178 (265)
T ss_dssp             ---SCCTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ---CCCCCchhhHHHHHHHHHHHHHHHHHhc
Confidence               1223222345555555566777777764

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.06  E-value=2.4e-05  Score=74.49  Aligned_cols=112  Identities=15%  Similarity=0.182  Sum_probs=70.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC----------CcccEEEeCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----------LLKGVVATTD   74 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~----------~~~~v~~~~~   74 (300)
                      +.+|+|+| +|++|..++..|+..|.       +|+++|+++  ++++...........+          ...+++.+++
T Consensus         8 ~~~~~vIG-lG~vG~~~A~~La~~G~-------~V~~~D~~~--~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd   77 (446)
T 4a7p_A            8 SVRIAMIG-TGYVGLVSGACFSDFGH-------EVVCVDKDA--RKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTD   77 (446)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCS--TTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESC
T ss_pred             ceEEEEEc-CCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECC
Confidence            46899999 89999999999998875       899999975  4443221110000001          1235788889


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEec
Q 022227           75 AVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA  131 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~s  131 (300)
                      ..+++++||+||++.+.|...+..     ..++..+++.++.+.++.+++..+|..|
T Consensus        78 ~~ea~~~aDvvii~Vptp~~~~~~-----~~Dl~~v~~v~~~i~~~l~~g~iVV~~S  129 (446)
T 4a7p_A           78 LAEGVKDADAVFIAVGTPSRRGDG-----HADLSYVFAAAREIAENLTKPSVIVTKS  129 (446)
T ss_dssp             HHHHHTTCSEEEECCCCCBCTTTC-----CBCTHHHHHHHHHHHHSCCSCCEEEECS
T ss_pred             HHHHHhcCCEEEEEcCCCCccccC-----CccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            989999999999997666532111     1223444555556655554454444443

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=98.06  E-value=2.1e-05  Score=70.08  Aligned_cols=159  Identities=14%  Similarity=0.056  Sum_probs=86.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC----CcccEEE----eCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----LLKGVVA----TTD   74 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~----~~~~v~~----~~~   74 (300)
                      ++.+++.||||+|.||..++..|++.|.       +|++.|+++ .++++....++......    ...++.-    ..+
T Consensus        21 l~~k~~lVTGas~gIG~aia~~L~~~G~-------~V~~~~r~~-~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~   92 (288)
T 2x9g_A           21 MEAPAAVVTGAAKRIGRAIAVKLHQTGY-------RVVIHYHNS-AEAAVSLADELNKERSNTAVVCQADLTNSNVLPAS   92 (288)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHHTC-------EEEEEESSC-HHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-------eEEEEeCCc-hHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHH
Confidence            3456899999999999999999998875       789999863 13333333333210000    0011110    001


Q ss_pred             hhh-------hcCCCcEEEEeCCCCCCC--------C-----CcH---HHHHHhhHHHHHHHHHHHhhhcCC--------
Q 022227           75 AVE-------ACTGVNIAVMVGGFPRKE--------G-----MER---KDVMSKNVSIYKAQASALEQHAAP--------  123 (300)
Q Consensus        75 ~~~-------a~~~aDvVi~~ag~~~~~--------g-----~~r---~dl~~~N~~i~~~i~~~i~~~~~~--------  123 (300)
                      ..+       .+...|++|+.||.....        .     .+.   ...+..|+.....+.+.+.+.-.+        
T Consensus        93 v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~  172 (288)
T 2x9g_A           93 CEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSS  172 (288)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CC
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCC
Confidence            111       234789999999975321        1     211   234667776666666555443211        


Q ss_pred             CeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       124 ~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      ..++|++++....         .+.|....|+.++.-...+.+.++.++.  +..|+
T Consensus       173 ~g~iv~isS~~~~---------~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~  218 (288)
T 2x9g_A          173 NLSIVNLCDAMVD---------QPCMAFSLYNMGKHALVGLTQSAALELA--PYGIR  218 (288)
T ss_dssp             CEEEEEECCTTTT---------SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             CeEEEEEeccccc---------CCCCCCchHHHHHHHHHHHHHHHHHHhh--ccCeE
Confidence            2467777764321         1223222455566555566777777764  33454

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=98.06  E-value=1.6e-05  Score=70.38  Aligned_cols=152  Identities=16%  Similarity=0.127  Sum_probs=82.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhh-----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA-----   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a-----   78 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|++.|++.  ++++....++.........++.-..+..++     
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~   99 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL-------GVVIADLAA--EKGKALADELGNRAEFVSTNVTSEDSVLAAIEAAN   99 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHH
Confidence            346799999999999999999999875       799999863  444433322211100000000000011111     


Q ss_pred             -cCCCcEEEEe-CCCCCCC--------CCc---HHHHHHhhHHHHHHHHHHHhhhc--------CCCeEEEEecCchhhH
Q 022227           79 -CTGVNIAVMV-GGFPRKE--------GME---RKDVMSKNVSIYKAQASALEQHA--------APNCKVLVVANPANTN  137 (300)
Q Consensus        79 -~~~aDvVi~~-ag~~~~~--------g~~---r~dl~~~N~~i~~~i~~~i~~~~--------~~~~~viv~sNP~~~~  137 (300)
                       +...|++|+. ||.....        ..+   -...+..|+.....+.+.+...-        .+..++|++|+.... 
T Consensus       100 ~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~-  178 (281)
T 3ppi_A          100 QLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGY-  178 (281)
T ss_dssp             TSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGT-
T ss_pred             HhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEeccccc-
Confidence             2367999998 6553211        112   23456667665555555443221        123567777765431 


Q ss_pred             HHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          138 ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       138 ~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                              .+.|....|+.++.-...+.+.+++++.
T Consensus       179 --------~~~~~~~~Y~asKaa~~~~~~~la~e~~  206 (281)
T 3ppi_A          179 --------EGQIGQTAYAAAKAGVIGLTIAAARDLS  206 (281)
T ss_dssp             --------SCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             --------CCCCCCcccHHHHHHHHHHHHHHHHHHh
Confidence                    1233223455666666667777777764

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=98.05  E-value=1.5e-05  Score=70.49  Aligned_cols=152  Identities=16%  Similarity=0.149  Sum_probs=85.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhh--
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE--   77 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~--   77 (300)
                      .+.+++.||||+|.||.+++..|++.|.       ++++.|... .+.++....++......   ...++.-..+..+  
T Consensus        26 l~~k~vlVTGas~gIG~aia~~la~~G~-------~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~   97 (269)
T 4dmm_A           26 LTDRIALVTGASRGIGRAIALELAAAGA-------KVAVNYASS-AGAADEVVAAIAAAGGEAFAVKADVSQESEVEALF   97 (269)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCC-hHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence            3456899999999999999999999875       688888742 33333333333221100   0001000001112  


Q ss_pred             -----hcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           78 -----ACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        78 -----a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                           .+...|++|+.||......   .+.   ...+..|+.....+.+.    +.+..  ..++|++|+....      
T Consensus        98 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~------  169 (269)
T 4dmm_A           98 AAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR--SGRIINIASVVGE------  169 (269)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCHHHH------
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhc------
Confidence                 2337899999999864321   122   33566776665555544    44443  2467887753321      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                       .  +.|....|+.++.-...+.+.+|.+++
T Consensus       170 -~--~~~~~~~Y~asK~a~~~l~~~la~e~~  197 (269)
T 4dmm_A          170 -M--GNPGQANYSAAKAGVIGLTKTVAKELA  197 (269)
T ss_dssp             -H--CCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             -C--CCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence             1  223223456666666667777777764

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=98.04  E-value=3.9e-05  Score=66.46  Aligned_cols=146  Identities=18%  Similarity=0.229  Sum_probs=73.0

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhh---------hhhhhhccCCcccEEE
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK---------MELVDAAFPLLKGVVA   71 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~---------~dl~~~~~~~~~~v~~   71 (300)
                      |+++.+++.||||+|.+|.+++..|++ +.       .++++|.++  ++++...         .|+.+.....     .
T Consensus         1 m~l~~k~vlITGas~gIG~~~a~~l~~-g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~D~~~~~~~~-----~   65 (245)
T 3e9n_A            1 MSLKKKIAVVTGATGGMGIEIVKDLSR-DH-------IVYALGRNP--EHLAALAEIEGVEPIESDIVKEVLEE-----G   65 (245)
T ss_dssp             -----CEEEEESTTSHHHHHHHHHHTT-TS-------EEEEEESCH--HHHHHHHTSTTEEEEECCHHHHHHTS-----S
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHhC-CC-------eEEEEeCCH--HHHHHHHhhcCCcceecccchHHHHH-----H
Confidence            777778999999999999999999876 42       688888753  3332211         1222211000     0


Q ss_pred             eCChhhhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           72 TTDAVEACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        72 ~~~~~~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                      .....+.+...|++|+.||......   .+.   ...+..|+..    ++.+.+.+++..   ..+|++|+.....    
T Consensus        66 ~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~---g~iv~isS~~~~~----  138 (245)
T 3e9n_A           66 GVDKLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS---GCVIYINSGAGNG----  138 (245)
T ss_dssp             SCGGGTTCSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEEC----------
T ss_pred             HHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC---CeEEEEcCccccc----
Confidence            0011233457899999999754221   121   2345667655    444455554442   3577777544211    


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                           +.|....|+.++.-...+.+.++++++
T Consensus       139 -----~~~~~~~Y~asK~a~~~~~~~la~e~~  165 (245)
T 3e9n_A          139 -----PHPGNTIYAASKHALRGLADAFRKEEA  165 (245)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             -----CCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence                 122222455566666667777777764

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=98.04  E-value=1.5e-05  Score=72.55  Aligned_cols=155  Identities=12%  Similarity=0.067  Sum_probs=82.5

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC---chhhhhhhhhhhhhhccC---CcccEEEeCC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP---AAEALNGVKMELVDAAFP---LLKGVVATTD   74 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~---~~~~l~g~~~dl~~~~~~---~~~~v~~~~~   74 (300)
                      |+++.++|.||||+|.||.+++..|++.|.       +|++.+++.   +.++++.....+......   ...+++-..+
T Consensus         1 M~m~~k~vlVTGas~GIG~aia~~L~~~G~-------~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~   73 (324)
T 3u9l_A            1 MVMSKKIILITGASSGFGRLTAEALAGAGH-------RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVS   73 (324)
T ss_dssp             ----CCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHH
Confidence            777778899999999999999999999875       677665431   122332221111111100   0011111111


Q ss_pred             hhhhcC-------CCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhH
Q 022227           75 AVEACT-------GVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTN  137 (300)
Q Consensus        75 ~~~a~~-------~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~  137 (300)
                      ..++++       ..|++|+.||.....   ..+.   ...+..|+.....+.+.+    ++..  ...+|++|+.....
T Consensus        74 v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~--~g~iV~isS~~~~~  151 (324)
T 3u9l_A           74 VDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQK--HGLLIWISSSSSAG  151 (324)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEecchhcc
Confidence            223333       899999999975321   1122   345677877766666655    5543  34677777644310


Q ss_pred             HHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          138 ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       138 ~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                              ...|....|+.++.-...+...++.++
T Consensus       152 --------~~~~~~~~Y~asKaa~~~~~~~la~el  178 (324)
T 3u9l_A          152 --------GTPPYLAPYFAAKAAMDAIAVQYAREL  178 (324)
T ss_dssp             --------CCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------CCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence                    111211235555555566666777765

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=98.04  E-value=1.2e-05  Score=71.19  Aligned_cols=155  Identities=14%  Similarity=0.173  Sum_probs=88.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC---cccEEEeCChh----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAV----   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~---~~~v~~~~~~~----   76 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|++.|.++  +.++....++.......   ..++.-..+..    
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~   97 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGA-------MVIGTATTE--AGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVE   97 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHH
Confidence            346899999999999999999999875       789999863  44443333333211000   00110000111    


Q ss_pred             ---hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           77 ---EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        77 ---~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                         +.+...|++|+.||.....   ..+.   ...+..|+.....+.+.+    .+..  ..++|++|+....       
T Consensus        98 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~-------  168 (270)
T 3ftp_A           98 STLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKAR--GGRIVNITSVVGS-------  168 (270)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHH-------
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhC-------
Confidence               2234789999999975422   1222   345667776666655544    3332  3568887764321       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      .  +.|....|+.++.-...+.+.+++++.  +..|+
T Consensus       169 ~--~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~  201 (270)
T 3ftp_A          169 A--GNPGQVNYAAAKAGVAGMTRALAREIG--SRGIT  201 (270)
T ss_dssp             H--CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             C--CCCCchhHHHHHHHHHHHHHHHHHHHh--hhCeE
Confidence            1  233233456666666667777777764  33454

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.04  E-value=2e-05  Score=59.79  Aligned_cols=101  Identities=14%  Similarity=0.107  Sum_probs=60.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +++||+|+|| |++|+.++..|...|.      .+++++|+++  ++++...   .........++.-..+..+.++++|
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~------~~v~~~~r~~--~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~d   71 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSN------YSVTVADHDL--AALAVLN---RMGVATKQVDAKDEAGLAKALGGFD   71 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSS------EEEEEEESCH--HHHHHHH---TTTCEEEECCTTCHHHHHHHTTTCS
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCC------ceEEEEeCCH--HHHHHHH---hCCCcEEEecCCCHHHHHHHHcCCC
Confidence            4579999996 9999999999998762      1799999863  3333211   0000000001101123456788999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      +||++++...                ...+.+.+.+.   ++.++.++...+
T Consensus        72 ~vi~~~~~~~----------------~~~~~~~~~~~---g~~~~~~~~~~~  104 (118)
T 3ic5_A           72 AVISAAPFFL----------------TPIIAKAAKAA---GAHYFDLTEDVA  104 (118)
T ss_dssp             EEEECSCGGG----------------HHHHHHHHHHT---TCEEECCCSCHH
T ss_pred             EEEECCCchh----------------hHHHHHHHHHh---CCCEEEecCcHH
Confidence            9999974221                13555555555   345677776655

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=98.03  E-value=2.5e-05  Score=68.98  Aligned_cols=149  Identities=13%  Similarity=0.183  Sum_probs=85.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCCh-----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDA-----   75 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~-----   75 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|++.|+++  ++++....++......   ...+++-..+.     
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~   73 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGA-------KILLGARRQ--ARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQ   73 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence            446899999999999999999998875       799999863  4554444444322100   00011000011     


Q ss_pred             --hhhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           76 --VEACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        76 --~~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i----~~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                        .+.+...|++|+.||......   .+.   ...+..|+.....+    .+.+.+..  ..++|++|+....       
T Consensus        74 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~IV~isS~~~~-------  144 (264)
T 3tfo_A           74 AAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQR--SGQIINIGSIGAL-------  144 (264)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT-------
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CeEEEEEcCHHHc-------
Confidence              122347899999999754221   122   33466676555544    44444443  3568888764431       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                        .+.|..-.|+.++.-...+.+.++.++
T Consensus       145 --~~~~~~~~Y~asKaal~~l~~~la~e~  171 (264)
T 3tfo_A          145 --SVVPTAAVYCATKFAVRAISDGLRQES  171 (264)
T ss_dssp             --CCCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             --ccCCCChhHHHHHHHHHHHHHHHHHhC
Confidence              123322245556655566777778775

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=98.03  E-value=2e-05  Score=69.95  Aligned_cols=154  Identities=14%  Similarity=0.108  Sum_probs=89.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh-----
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV-----   76 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~-----   76 (300)
                      .+++.||||+|.||.+++..|++.|.       +|++.|+++  ++++....++......   ...+++-..+..     
T Consensus        24 ~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~   94 (279)
T 3sju_A           24 PQTAFVTGVSSGIGLAVARTLAARGI-------AVYGCARDA--KNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAA   94 (279)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence            46799999999999999999999875       789999863  4444333333321100   000110000111     


Q ss_pred             --hhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHHhh------hcCCCeEEEEecCchhhHHHHHH
Q 022227           77 --EACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQ------HAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        77 --~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~~------~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                        +.+...|++|+.||......   .+.   .+.+..|+.....+.+.+.+      ..  ..++|++|+....      
T Consensus        95 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~--~g~iV~isS~~~~------  166 (279)
T 3sju_A           95 AVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAG--WGRIVNIASTGGK------  166 (279)
T ss_dssp             HHHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHT--CEEEEEECCGGGT------
T ss_pred             HHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcC--CcEEEEECChhhc------
Confidence              22346899999999754221   122   34567787777777666543      32  3478888765431      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                         .+.|....++.++.-...+.+.+|.+++  +..|+
T Consensus       167 ---~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~  199 (279)
T 3sju_A          167 ---QGVMYAAPYTASKHGVVGFTKSVGFELA--KTGIT  199 (279)
T ss_dssp             ---SCCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEE
T ss_pred             ---cCCCCChhHHHHHHHHHHHHHHHHHHHH--hhCcE
Confidence               1223222455666666677777887764  33454

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=98.03  E-value=5.6e-05  Score=66.27  Aligned_cols=155  Identities=17%  Similarity=0.159  Sum_probs=84.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCCh-----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDA-----   75 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~-----   75 (300)
                      +.+++.||||+|.+|..++..|++.|.       +|+++|+++  ++++....++......   ...++.-..+.     
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   76 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT-------AIALLDMNR--EALEKAEASVREKGVEARSYVCDVTSEEAVIGTVD   76 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence            457899999999999999999999875       788998863  4444333333221100   00000000011     


Q ss_pred             --hhhcCCCcEEEEeCCCC-CC-C--CCcH---HHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEecCchhhHHHHHH
Q 022227           76 --VEACTGVNIAVMVGGFP-RK-E--GMER---KDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        76 --~~a~~~aDvVi~~ag~~-~~-~--g~~r---~dl~~~N~~i~~~i~~~i~----~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                        .+.+...|++|+.||.. .. +  ..+.   ...+..|+.....+.+.+.    +..  ..++|++|+....      
T Consensus        77 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~------  148 (262)
T 1zem_A           77 SVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN--YGRIVNTASMAGV------  148 (262)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHH------
T ss_pred             HHHHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhc------
Confidence              12234789999999875 21 1  1122   3346667665555554443    332  2467777764321      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                         .+.|....|+.++.-...+.+.++.++.  +..|+
T Consensus       149 ---~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~  181 (262)
T 1zem_A          149 ---KGPPNMAAYGTSKGAIIALTETAALDLA--PYNIR  181 (262)
T ss_dssp             ---SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             ---cCCCCCchHHHHHHHHHHHHHHHHHHHH--hhCeE
Confidence               1223222345555555566666777663  33454

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=98.03  E-value=3.4e-05  Score=68.35  Aligned_cols=153  Identities=15%  Similarity=0.116  Sum_probs=85.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC-----------chhhhhhhhhhhhhhccCC---cccE
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-----------AAEALNGVKMELVDAAFPL---LKGV   69 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~-----------~~~~l~g~~~dl~~~~~~~---~~~v   69 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|+++|++.           +.++++....++.......   ..++
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv   86 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGA-------DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDV   86 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence            456899999999999999999999875       789998731           2233333322232211000   0011


Q ss_pred             EEeCChh-------hhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecC
Q 022227           70 VATTDAV-------EACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVAN  132 (300)
Q Consensus        70 ~~~~~~~-------~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sN  132 (300)
                      .-..+..       +.+...|++|+.||......   .+.   ...+..|+.....+.+.    +.+... ..++|++|+
T Consensus        87 ~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS  165 (280)
T 3pgx_A           87 RDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGN-GGSIVVVSS  165 (280)
T ss_dssp             TCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCS-CEEEEEECC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CCEEEEEcc
Confidence            0000111       22347899999999754221   122   23466676655554444    444432 356888876


Q ss_pred             chhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          133 PANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       133 P~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ....         .+.|....|+.++.-...+.+.++.++.
T Consensus       166 ~~~~---------~~~~~~~~Y~asKaa~~~~~~~la~e~~  197 (280)
T 3pgx_A          166 SAGL---------KATPGNGHYSASKHGLTALTNTLAIELG  197 (280)
T ss_dssp             GGGT---------SCCTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             hhhc---------cCCCCchhHHHHHHHHHHHHHHHHHHhh
Confidence            5431         1233223455566556667777777764

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=98.03  E-value=7.1e-05  Score=65.59  Aligned_cols=151  Identities=14%  Similarity=0.047  Sum_probs=84.6

Q ss_pred             CCcEEEEEcCCCh-HHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc----ccEEEeCChhhh
Q 022227            4 EPVRVLVTGAAGQ-IGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL----KGVVATTDAVEA   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~-vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~----~~v~~~~~~~~a   78 (300)
                      +.+++.||||+|+ +|.+++..|++.|.       +|++.|++.  ++++....++........    .++.-..+..+.
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~   91 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA-------DVVISDYHE--RRLGETRDQLADLGLGRVEAVVCDVTSTEAVDAL   91 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC-------EEEEecCCH--HHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHH
Confidence            4568999998785 99999999999875       799999863  444433333322110000    011000111122


Q ss_pred             -------cCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHHhh----hcCCCeEEEEecCchhhHHHHH
Q 022227           79 -------CTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQ----HAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        79 -------~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~~----~~~~~~~viv~sNP~~~~~~~~  141 (300)
                             +...|++|+.||......   .+.   ...+..|+.....+.+.+..    ... ..++|++|+....     
T Consensus        92 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~-----  165 (266)
T 3o38_A           92 ITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDH-GGVIVNNASVLGW-----  165 (266)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSC-CEEEEEECCGGGT-----
T ss_pred             HHHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEeCCHHHc-----
Confidence                   236799999999754221   222   33466676655555554443    322 3567777754431     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                          .+.|....|+.++.-...+.+.+++++.
T Consensus       166 ----~~~~~~~~Y~~sKaa~~~~~~~la~e~~  193 (266)
T 3o38_A          166 ----RAQHSQSHYAAAKAGVMALTRCSAIEAV  193 (266)
T ss_dssp             ----CCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ----CCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence                1233233456666666677777777763

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=98.02  E-value=2.1e-05  Score=67.83  Aligned_cols=148  Identities=14%  Similarity=0.087  Sum_probs=80.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEE-EecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhhc--
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHM-LDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC--   79 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L-~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a~--   79 (300)
                      ++|.||||+|++|.+++..|++.|.       ++++ .+.+  .++++....++......   ...++.-..+..+++  
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~-------~v~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   72 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGC-------KVLVNYARS--AKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKT   72 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC--HHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCC--HHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHH
Confidence            5799999999999999999998875       6777 4554  23333222223211100   000000001122222  


Q ss_pred             -----CCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHHHHHHHHHHhhh---cCCCeEEEEecCchhhHHHHHHHHC
Q 022227           80 -----TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQH---AAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        80 -----~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~---~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                           .+.|++|+.||......   .+   -.+.+..|+.....+.+.+.+.   .. ..++|++|+....       . 
T Consensus        73 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~-------~-  143 (244)
T 1edo_A           73 AIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR-KGRIINIASVVGL-------I-  143 (244)
T ss_dssp             HHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHH-------H-
T ss_pred             HHHHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC-CCEEEEECChhhc-------C-
Confidence                 37899999999764321   12   2345677877766665555443   12 3467777765321       1 


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                       +.|....++.++.-...+.+.+++++
T Consensus       144 -~~~~~~~Y~~sK~a~~~~~~~la~e~  169 (244)
T 1edo_A          144 -GNIGQANYAAAKAGVIGFSKTAAREG  169 (244)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCCccchhhHHHHHHHHHHHHHHh
Confidence             12322234555555555666666665

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=98.02  E-value=2.1e-05  Score=69.89  Aligned_cols=153  Identities=13%  Similarity=0.062  Sum_probs=84.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc--------------hhhhhhhhhhhhhhccC---Cc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA--------------AEALNGVKMELVDAAFP---LL   66 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~--------------~~~l~g~~~dl~~~~~~---~~   66 (300)
                      +.+++.||||+|.||.+++..|++.|.       .|+++|+++.              .++++....++......   ..
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGA-------DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAE   82 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEE
Confidence            456899999999999999999999875       7899987521              22333222222211100   00


Q ss_pred             ccEEEeCChhh-------hcCCCcEEEEeCCCCCCCC----CcH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEE
Q 022227           67 KGVVATTDAVE-------ACTGVNIAVMVGGFPRKEG----MER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVL  128 (300)
Q Consensus        67 ~~v~~~~~~~~-------a~~~aDvVi~~ag~~~~~g----~~r---~dl~~~N~~i~~~i~~~----i~~~~~~~~~vi  128 (300)
                      .++.-..+..+       .+...|++|+.||......    .+.   ...+..|+.....+.+.    +.+... ..++|
T Consensus        83 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv  161 (286)
T 3uve_A           83 VDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGR-GGSII  161 (286)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC-CcEEE
Confidence            01000001112       2337899999999754322    122   23566776655555544    444332 35678


Q ss_pred             EecCchhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       129 v~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ++|+....         .+.|..-.|+.++.-...+.+.+|.+++
T Consensus       162 ~isS~~~~---------~~~~~~~~Y~asKaa~~~~~~~la~e~~  197 (286)
T 3uve_A          162 LTSSVGGL---------KAYPHTGHYVAAKHGVVGLMRAFGVELG  197 (286)
T ss_dssp             EECCGGGT---------SCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             EECchhhc---------cCCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence            87764431         1233222355555555667777777764

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.02  E-value=2.1e-05  Score=72.04  Aligned_cols=114  Identities=17%  Similarity=0.198  Sum_probs=67.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchh---hhhhhhhhhhhhc----cCCcccEEEeCChh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE---ALNGVKMELVDAA----FPLLKGVVATTDAV   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~---~l~g~~~dl~~~~----~~~~~~v~~~~~~~   76 (300)
                      ..|||+|+| +|.+|+.++..|...|...+....+|.++|+++...   +++....+-....    ......+..+++..
T Consensus         7 ~~mkI~iIG-~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (354)
T 1x0v_A            7 ASKKVCIVG-SGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVV   85 (354)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHH
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHH
Confidence            357999999 799999999999887621000001799999864210   2221111000000    01123466677877


Q ss_pred             hhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                      ++++++|+||++.  |   ..           .+.++++.+..+.+++..++.++|..
T Consensus        86 ~~~~~aD~Vilav--~---~~-----------~~~~v~~~i~~~l~~~~ivv~~~~Gi  127 (354)
T 1x0v_A           86 QAAEDADILIFVV--P---HQ-----------FIGKICDQLKGHLKANATGISLIKGV  127 (354)
T ss_dssp             HHHTTCSEEEECC--C---GG-----------GHHHHHHHHTTCSCTTCEEEECCCCB
T ss_pred             HHHcCCCEEEEeC--C---HH-----------HHHHHHHHHHhhCCCCCEEEEECCcc
Confidence            8899999999984  1   11           23455666766655566677777744

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=98.01  E-value=2.7e-05  Score=68.79  Aligned_cols=158  Identities=15%  Similarity=0.098  Sum_probs=86.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc----------hhhhhhhhhhhhhhccC---CcccEE
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA----------AEALNGVKMELVDAAFP---LLKGVV   70 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~----------~~~l~g~~~dl~~~~~~---~~~~v~   70 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|+++|+++.          .+.++....++......   ...+++
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~   84 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA-------DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVR   84 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-------eEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence            346899999999999999999999875       7899987521          23333222222221100   000110


Q ss_pred             EeCChhhhc-------CCCcEEEEeCCCCCCCCC--cHHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhH
Q 022227           71 ATTDAVEAC-------TGVNIAVMVGGFPRKEGM--ERKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTN  137 (300)
Q Consensus        71 ~~~~~~~a~-------~~aDvVi~~ag~~~~~g~--~r~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~  137 (300)
                      -..+..+.+       ...|++|+.||.......  +-.+.+..|+.....+.+.    +.+... ..++|++|+.....
T Consensus        85 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~~  163 (278)
T 3sx2_A           85 DRESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGT-GGSIVLISSSAGLA  163 (278)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCS-CEEEEEECCGGGTS
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CcEEEEEccHHhcC
Confidence            001112222       378999999997642221  1234566776665555554    444432 35678877644311


Q ss_pred             HHHHHHHCCCC----CCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          138 ALILKEFAPSI----PAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       138 ~~~~~~~~~~~----p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                               +.    |....|+.++.-...+.+.++.+++  +..|+
T Consensus       164 ---------~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~  199 (278)
T 3sx2_A          164 ---------GVGSADPGSVGYVAAKHGVVGLMRVYANLLA--GQMIR  199 (278)
T ss_dssp             ---------CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             ---------CCccCCCCchHhHHHHHHHHHHHHHHHHHHh--ccCcE
Confidence                     11    1011244455555566777777765  33454

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=98.01  E-value=0.00013  Score=63.56  Aligned_cols=150  Identities=17%  Similarity=0.149  Sum_probs=83.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCC------hh-
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD------AV-   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~------~~-   76 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|+++|+++  ++++....++.........-..+..|      .. 
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~   76 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY-------RVVLIARSK--QNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADT   76 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC-------EEEEEESCH--HHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHhccccCcceEEeccCCCHHHHHH
Confidence            457899999999999999999998875       789999863  44544433333221000000001111      11 


Q ss_pred             ------hhcCCCcEEEEeCCCCCCC--CCcH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHH
Q 022227           77 ------EACTGVNIAVMVGGFPRKE--GMER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        77 ------~a~~~aDvVi~~ag~~~~~--g~~r---~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                            +.+...|++|+.||.....  ..+.   ...+..|+.....+.+.    +++..  ..++|++|+.....    
T Consensus        77 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~----  150 (250)
T 3nyw_A           77 EIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQK--NGYIFNVASRAAKY----  150 (250)
T ss_dssp             HHHHHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECC---------
T ss_pred             HHHHHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CeEEEEEccHHhcC----
Confidence                  1234689999999975322  2222   23456676555444444    44443  34678887654311    


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                           +.++.-.|+.++.-...+.+.++.++.
T Consensus       151 -----~~~~~~~Y~asKaa~~~l~~~la~e~~  177 (250)
T 3nyw_A          151 -----GFADGGIYGSTKFALLGLAESLYRELA  177 (250)
T ss_dssp             -------CCTTHHHHHHHHHHHHHHHHHHHHG
T ss_pred             -----CCCCCcchHHHHHHHHHHHHHHHHHhh
Confidence                 112223456666666667777777764

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=98.00  E-value=1.4e-05  Score=70.42  Aligned_cols=152  Identities=14%  Similarity=0.116  Sum_probs=83.5

Q ss_pred             CCcEEEEEcC--CChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhh---
Q 022227            4 EPVRVLVTGA--AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA---   78 (300)
Q Consensus         4 ~~~kV~IiGA--aG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a---   78 (300)
                      +.+++.||||  +|.+|.+++..|++.|.       +|++.|+++. +.++....++.........++.-..+..+.   
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~-------~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   77 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGA-------QLVLTGFDRL-RLIQRITDRLPAKAPLLELDVQNEEHLASLAGR   77 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-------EEEEEECSCH-HHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCC-------EEEEEecChH-HHHHHHHHhcCCCceEEEccCCCHHHHHHHHHH
Confidence            4568999998  89999999999998875       7899998642 112211111100000000010000011222   


Q ss_pred             ----cC---CCcEEEEeCCCCCC------C--CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH
Q 022227           79 ----CT---GVNIAVMVGGFPRK------E--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        79 ----~~---~aDvVi~~ag~~~~------~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                          +.   ..|++|+.||....      +  ..+.   ...+..|+.....+.+.+.++-.+..++|++|....     
T Consensus        78 ~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~-----  152 (269)
T 2h7i_A           78 VTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPS-----  152 (269)
T ss_dssp             HHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCS-----
T ss_pred             HHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccc-----
Confidence                22   78999999997541      1  1222   345678888888888887765322346777764221     


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                           .+.|....|+.++.-...+.+.++.++.
T Consensus       153 -----~~~~~~~~Y~asKaa~~~l~~~la~e~~  180 (269)
T 2h7i_A          153 -----RAMPAYNWMTVAKSALESVNRFVAREAG  180 (269)
T ss_dssp             -----SCCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----cccCchHHHHHHHHHHHHHHHHHHHHhc
Confidence                 1122222334455555566666777663

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.99  E-value=9.7e-05  Score=64.20  Aligned_cols=151  Identities=19%  Similarity=0.150  Sum_probs=83.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV----   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~----   76 (300)
                      +.+++.||||+|.+|.+++..|++.|.       +|++.|+++  ++++....++......   ...++.-..+..    
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~   76 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA-------AVAIAARRV--EKLRALGDELTAAGAKVHVLELDVADRQGVDAAVA   76 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence            457899999999999999999999875       789998863  4444333333221100   000000000111    


Q ss_pred             ---hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEecCchhhHHHHHHHHC
Q 022227           77 ---EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        77 ---~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~--~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                         +.+...|++|+.||.....   ..+.   ...+..|+.....+.+.+.++-  .+ .++|++|+-...         
T Consensus        77 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~---------  146 (247)
T 2jah_A           77 STVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGR---------  146 (247)
T ss_dssp             HHHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGT---------
T ss_pred             HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhc---------
Confidence               1234789999999975321   1222   3356677766666555543321  11 367777764321         


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .+.|....|+.++.....+.+.+++++.
T Consensus       147 ~~~~~~~~Y~asK~a~~~~~~~la~e~~  174 (247)
T 2jah_A          147 VNVRNAAVYQATKFGVNAFSETLRQEVT  174 (247)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            1223222345555555556666776663

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.99  E-value=2.7e-05  Score=69.45  Aligned_cols=70  Identities=14%  Similarity=0.227  Sum_probs=50.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +.+||+||| +|.+|..++..|...|+ .   +.+|.++|+++  ++++..    .+..     .+..+++..++++++|
T Consensus         2 ~~~~I~iIG-~G~mG~aia~~l~~~g~-~---~~~V~v~dr~~--~~~~~l----~~~~-----gi~~~~~~~~~~~~aD   65 (280)
T 3tri_A            2 NTSNITFIG-GGNMARNIVVGLIANGY-D---PNRICVTNRSL--DKLDFF----KEKC-----GVHTTQDNRQGALNAD   65 (280)
T ss_dssp             CCSCEEEES-CSHHHHHHHHHHHHTTC-C---GGGEEEECSSS--HHHHHH----HHTT-----CCEEESCHHHHHSSCS
T ss_pred             CCCEEEEEc-ccHHHHHHHHHHHHCCC-C---CCeEEEEeCCH--HHHHHH----HHHc-----CCEEeCChHHHHhcCC
Confidence            347999999 79999999999998764 1   12689999864  443322    2110     2345667888999999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +||++.
T Consensus        66 vVilav   71 (280)
T 3tri_A           66 VVVLAV   71 (280)
T ss_dssp             EEEECS
T ss_pred             eEEEEe
Confidence            999985

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.99  E-value=1.6e-05  Score=69.23  Aligned_cols=156  Identities=12%  Similarity=0.100  Sum_probs=85.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC---cccEEEeCChh----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAV----   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~---~~~v~~~~~~~----   76 (300)
                      +.++|.||||+|.+|.+++..|++.|.       .+++.+... .++++....++.......   ..++.-..+..    
T Consensus        12 ~~k~vlITGas~giG~~ia~~l~~~G~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~   83 (256)
T 3ezl_A           12 SQRIAYVTGGMGGIGTSICQRLHKDGF-------RVVAGCGPN-SPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFD   83 (256)
T ss_dssp             -CEEEEETTTTSHHHHHHHHHHHHTTE-------EEEEEECTT-CSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHH
Confidence            357899999999999999999999875       677877322 223322222222211000   00110000112    


Q ss_pred             ---hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           77 ---EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        77 ---~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                         +.+...|++|+.||.....   ..+.   ...+..|+..    ++.+.+.+.+..  ..++|++|+....       
T Consensus        84 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~-------  154 (256)
T 3ezl_A           84 KVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG--WGRIINISSVNGQ-------  154 (256)
T ss_dssp             HHHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCCCGG-------
T ss_pred             HHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcchhhc-------
Confidence               2233789999999976422   1222   3456677766    444455555553  3578888875432       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                        .+.|....++.++.-...+.+.+++++.  +..|+
T Consensus       155 --~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~  187 (256)
T 3ezl_A          155 --KGQFGQTNYSTAKAGIHGFTMSLAQEVA--TKGVT  187 (256)
T ss_dssp             --GSCSCCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             --cCCCCCcccHHHHHHHHHHHHHHHHHHH--HhCCE
Confidence              1223223455666656667777777764  33454

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=97.99  E-value=1.8e-05  Score=71.66  Aligned_cols=153  Identities=12%  Similarity=0.116  Sum_probs=84.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc----------hhhhhhhhhhhhhhccC---CcccEE
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA----------AEALNGVKMELVDAAFP---LLKGVV   70 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~----------~~~l~g~~~dl~~~~~~---~~~~v~   70 (300)
                      +.+++.||||+|.||..++..|++.|.       +++++|++..          .+.++....++......   ...++.
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~-------~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~  117 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGA-------DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVR  117 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------eEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence            446899999999999999999999875       7889887521          12222221122111100   000100


Q ss_pred             EeCChhh-------hcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCc
Q 022227           71 ATTDAVE-------ACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANP  133 (300)
Q Consensus        71 ~~~~~~~-------a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP  133 (300)
                      -..+..+       .+...|++|+.||.....   ..+.   ...+..|+.....+.+.+    .+... ...+|++|+.
T Consensus       118 d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-~g~Iv~isS~  196 (317)
T 3oec_A          118 DLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQ-GGSVIFVSST  196 (317)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCS-CEEEEEECCG
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CCEEEEECcH
Confidence            0001112       234789999999975421   2222   345667766555555444    44332 3567888765


Q ss_pred             hhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          134 ANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ...         .+.|....|+.++.-...+.+.+|.+++
T Consensus       197 ~~~---------~~~~~~~~Y~asKaa~~~l~~~la~e~~  227 (317)
T 3oec_A          197 VGL---------RGAPGQSHYAASKHGVQGLMLSLANEVG  227 (317)
T ss_dssp             GGS---------SCCTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             Hhc---------CCCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence            431         1233222455566666677777887764

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.98  E-value=1.7e-05  Score=69.28  Aligned_cols=154  Identities=17%  Similarity=0.188  Sum_probs=84.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhhc---
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC---   79 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a~---   79 (300)
                      +++.||||+|.+|.+++..|++.|.       +|++.|+++  ++++....++......   ...++.-..+..+++   
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   73 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGF-------AVAIADYND--ATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQA   73 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence            5799999999999999999999875       789998863  3443333333221100   000100001122222   


Q ss_pred             ----CCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHC
Q 022227           80 ----TGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        80 ----~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                          ...|++|+.||.....   ..+.   ...+..|+...    +.+.+.+.+... ..++|++|+....         
T Consensus        74 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~---------  143 (256)
T 1geg_A           74 RKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGH-GGKIINACSQAGH---------  143 (256)
T ss_dssp             HHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGT---------
T ss_pred             HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CCEEEEECchhhc---------
Confidence                3799999999875321   1122   23466676544    444455544431 2467777764431         


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      .+.|....|+.++.-...+.+.++.++.  +..|+
T Consensus       144 ~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~  176 (256)
T 1geg_A          144 VGNPELAVYSSSKFAVRGLTQTAARDLA--PLGIT  176 (256)
T ss_dssp             SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHH--HcCeE
Confidence            1223222345555555566677777663  33454

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.97  E-value=7.1e-06  Score=75.00  Aligned_cols=102  Identities=21%  Similarity=0.224  Sum_probs=63.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhh-hhhh--hhccCCcccEEEeCChhhhcCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK-MELV--DAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~-~dl~--~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      .|||+|+| +|.+|..++..|...|.       +|.++|+++   .++... ..+.  ........++..+++.. ++++
T Consensus         3 ~mkI~IiG-aG~~G~~~a~~L~~~g~-------~V~~~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~   70 (335)
T 3ghy_A            3 LTRICIVG-AGAVGGYLGARLALAGE-------AINVLARGA---TLQALQTAGLRLTEDGATHTLPVRATHDAA-ALGE   70 (335)
T ss_dssp             CCCEEEES-CCHHHHHHHHHHHHTTC-------CEEEECCHH---HHHHHHHTCEEEEETTEEEEECCEEESCHH-HHCC
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHHCCC-------EEEEEEChH---HHHHHHHCCCEEecCCCeEEEeeeEECCHH-HcCC
Confidence            47999999 79999999999998764       689999742   222111 0010  00000112344555654 4799


Q ss_pred             CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                      +|+||++.-                ...+.++++.+..+-+++..+|.+.|..
T Consensus        71 ~D~Vilavk----------------~~~~~~~~~~l~~~l~~~~~iv~~~nGi  107 (335)
T 3ghy_A           71 QDVVIVAVK----------------APALESVAAGIAPLIGPGTCVVVAMNGV  107 (335)
T ss_dssp             CSEEEECCC----------------HHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred             CCEEEEeCC----------------chhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            999999841                0224456666666555577788889985

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=97.97  E-value=3.8e-05  Score=69.71  Aligned_cols=153  Identities=14%  Similarity=0.130  Sum_probs=85.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC-------chhhhhhhhhhhhhhccCCcccEEEeCC-
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-------AAEALNGVKMELVDAAFPLLKGVVATTD-   74 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~-------~~~~l~g~~~dl~~~~~~~~~~v~~~~~-   74 (300)
                      ++.+++.||||+|.||..++..|+..|.       +|++.|...       +.++++....++.........++.-..+ 
T Consensus         7 l~gk~~lVTGas~GIG~~~a~~La~~Ga-------~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~   79 (319)
T 1gz6_A            7 FDGRVVLVTGAGGGLGRAYALAFAERGA-------LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAG   79 (319)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHH
Confidence            3457899999999999999999999875       788887631       1233333333332211000000000001 


Q ss_pred             ------hhhhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHH
Q 022227           75 ------AVEACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNA  138 (300)
Q Consensus        75 ------~~~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~  138 (300)
                            ..+.+...|++|+.||......   .+.   ...+..|+.....+.+.    +++..  ..++|++|+....  
T Consensus        80 ~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~grIV~vsS~~~~--  155 (319)
T 1gz6_A           80 EKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN--YGRIIMTASASGI--  155 (319)
T ss_dssp             HHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHH--
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECChhhc--
Confidence                  1122457899999999764321   222   33566777665555444    44443  3467887764321  


Q ss_pred             HHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       139 ~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                           +  +.|....|+.++.-...+.+.+++++.
T Consensus       156 -----~--~~~~~~~Y~aSK~a~~~~~~~la~el~  183 (319)
T 1gz6_A          156 -----Y--GNFGQANYSAAKLGLLGLANTLVIEGR  183 (319)
T ss_dssp             -----H--CCTTCHHHHHHHHHHHHHHHHHHHHTG
T ss_pred             -----c--CCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence                 1  122222455566666667777777763

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=97.97  E-value=4.3e-05  Score=67.46  Aligned_cols=146  Identities=12%  Similarity=0.107  Sum_probs=85.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh----hhhhhhhhccCCcccEEEeCChhhhc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG----VKMELVDAAFPLLKGVVATTDAVEAC   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g----~~~dl~~~~~~~~~~v~~~~~~~~a~   79 (300)
                      +.++|.||||+|.||.+++..|++.|.       +|++.|+++  +.+.+    ...|+.+....  ..  ......+.+
T Consensus        13 ~~k~vlVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~Dv~~~~~v--~~--~~~~~~~~~   79 (269)
T 3vtz_A           13 TDKVAIVTGGSSGIGLAVVDALVRYGA-------KVVSVSLDE--KSDVNVSDHFKIDVTNEEEV--KE--AVEKTTKKY   79 (269)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCC----CTTSSEEEECCTTCHHHH--HH--HHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCc--hhccCceeEEEecCCCHHHH--HH--HHHHHHHHc
Confidence            347899999999999999999999875       788998864  22211    22344332200  00  000122334


Q ss_pred             CCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHHHHHCCCCC
Q 022227           80 TGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKEFAPSIP  149 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p  149 (300)
                      ...|++|+.||......   .+.   ...+..|+.....+.+.    +.+..  ..++|++|+....         .+.|
T Consensus        80 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~---------~~~~  148 (269)
T 3vtz_A           80 GRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIG--HGSIINIASVQSY---------AATK  148 (269)
T ss_dssp             SCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------SBCT
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhc---------cCCC
Confidence            57899999999754221   122   23456776655555444    44443  3467887765431         1223


Q ss_pred             CCcEEeeehhhHHHHHHHHHHHcC
Q 022227          150 AKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       150 ~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ....|+.++.-...+.+.+|.+++
T Consensus       149 ~~~~Y~asKaa~~~l~~~la~e~~  172 (269)
T 3vtz_A          149 NAAAYVTSKHALLGLTRSVAIDYA  172 (269)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CChhHHHHHHHHHHHHHHHHHHhc
Confidence            222456666666777888888875

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.97  E-value=1.8e-05  Score=70.53  Aligned_cols=151  Identities=14%  Similarity=0.087  Sum_probs=85.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV----   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~----   76 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|++.|+++  ++++....++......   ...+++-..+..    
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~   77 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGA-------KVVVTARNG--NALAELTDEIAGGGGEAAALAGDVGDEALHEALVE   77 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEECCSCH--HHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence            346899999999999999999999875       789999863  4444333333221100   001111011111    


Q ss_pred             ---hhcCCCcEEEEeCCCCCCC----CCcH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           77 ---EACTGVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        77 ---~a~~~aDvVi~~ag~~~~~----g~~r---~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                         +.+...|++|+.||.....    ..+.   ...+..|+.....+.+.    +.+..  ..++|++|+....      
T Consensus        78 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~------  149 (280)
T 3tox_A           78 LAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALG--GGSLTFTSSFVGH------  149 (280)
T ss_dssp             HHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCSBTT------
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEEcChhhC------
Confidence               2234789999999964221    1222   33566676655555544    44432  3467777765431      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                        ..+.|....|+.++.-...+.+.+|.+++
T Consensus       150 --~~~~~~~~~Y~asKaa~~~l~~~la~e~~  178 (280)
T 3tox_A          150 --TAGFAGVAPYAASKAGLIGLVQALAVELG  178 (280)
T ss_dssp             --TBCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --cCCCCCchhHHHHHHHHHHHHHHHHHHhh
Confidence              01233223455666666667777777764

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.96  E-value=1.9e-05  Score=69.27  Aligned_cols=151  Identities=15%  Similarity=0.155  Sum_probs=86.8

Q ss_pred             CCcEEEEEcCC--ChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh
Q 022227            4 EPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA   78 (300)
Q Consensus         4 ~~~kV~IiGAa--G~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a   78 (300)
                      +.++|.||||+  |.+|.+++..|++.|.       +|++.|++..   ......++......   ...+++-..+..+.
T Consensus        13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~-------~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~   82 (271)
T 3ek2_A           13 DGKRILLTGLLSNRSIAYGIAKACKREGA-------ELAFTYVGDR---FKDRITEFAAEFGSELVFPCDVADDAQIDAL   82 (271)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-------EEEEEESSGG---GHHHHHHHHHHTTCCCEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHcCC-------CEEEEecchh---hHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence            45799999998  9999999999999875       7889987631   11111112111000   00011000111222


Q ss_pred             -------cCCCcEEEEeCCCCCC-----C--C-CcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH
Q 022227           79 -------CTGVNIAVMVGGFPRK-----E--G-MER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        79 -------~~~aDvVi~~ag~~~~-----~--g-~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                             +...|++|+.||....     +  . .+.   ...+..|+.....+.+.+.+.-.+..++|++|.....    
T Consensus        83 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~----  158 (271)
T 3ek2_A           83 FASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAE----  158 (271)
T ss_dssp             HHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGT----
T ss_pred             HHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccc----
Confidence                   2367999999997532     1  1 222   3456778888888888776653323467777754431    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                           .+.|....|+.++.-...+.+.+++++.
T Consensus       159 -----~~~~~~~~Y~asKaa~~~~~~~la~e~~  186 (271)
T 3ek2_A          159 -----RAIPNYNTMGLAKAALEASVRYLAVSLG  186 (271)
T ss_dssp             -----SBCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----cCCCCccchhHHHHHHHHHHHHHHHHHH
Confidence                 1233333455566556667777777764

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.95  E-value=7.2e-06  Score=70.47  Aligned_cols=96  Identities=13%  Similarity=0.130  Sum_probs=61.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEE-EecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHM-LDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L-~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      |+++||+|+| +|.+|..++..|...|.       ++.+ +|+++  ++++....++..       .  ...+..+++++
T Consensus        21 m~mmkI~IIG-~G~mG~~la~~l~~~g~-------~V~~v~~r~~--~~~~~l~~~~g~-------~--~~~~~~~~~~~   81 (220)
T 4huj_A           21 QSMTTYAIIG-AGAIGSALAERFTAAQI-------PAIIANSRGP--ASLSSVTDRFGA-------S--VKAVELKDALQ   81 (220)
T ss_dssp             GGSCCEEEEE-CHHHHHHHHHHHHHTTC-------CEEEECTTCG--GGGHHHHHHHTT-------T--EEECCHHHHTT
T ss_pred             hcCCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEECCCH--HHHHHHHHHhCC-------C--cccChHHHHhc
Confidence            3457999999 79999999999998764       5777 88863  444433222210       1  12244567899


Q ss_pred             CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      +|+||++.-     .           ..+.++++.+.. .+ +..+|-++||..
T Consensus        82 aDvVilavp-----~-----------~~~~~v~~~l~~-~~-~~ivi~~~~g~~  117 (220)
T 4huj_A           82 ADVVILAVP-----Y-----------DSIADIVTQVSD-WG-GQIVVDASNAID  117 (220)
T ss_dssp             SSEEEEESC-----G-----------GGHHHHHTTCSC-CT-TCEEEECCCCBC
T ss_pred             CCEEEEeCC-----h-----------HHHHHHHHHhhc-cC-CCEEEEcCCCCC
Confidence            999999841     1           112344444444 23 456788889874

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.95  E-value=5.7e-05  Score=65.24  Aligned_cols=143  Identities=15%  Similarity=0.154  Sum_probs=81.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhh------hhhhhhhccCCcccEEEeCChhhhc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGV------KMELVDAAFPLLKGVVATTDAVEAC   79 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~------~~dl~~~~~~~~~~v~~~~~~~~a~   79 (300)
                      +++.||||+|.+|..++..|++.|.       +|++.|+++  +++...      ..|+.+ .. . ..  ......+.+
T Consensus         3 k~vlVTGas~giG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~D~~~-~~-~-~~--~~~~~~~~~   68 (239)
T 2ekp_A            3 RKALVTGGSRGIGRAIAEALVARGY-------RVAIASRNP--EEAAQSLGAVPLPTDLEK-DD-P-KG--LVKRALEAL   68 (239)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSC--HHHHHHHTCEEEECCTTT-SC-H-HH--HHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHhhCcEEEecCCch-HH-H-HH--HHHHHHHHc
Confidence            5899999999999999999998875       799999874  222110      112222 10 0 00  000112234


Q ss_pred             CCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHHHHHCCCC-
Q 022227           80 TGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKEFAPSI-  148 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~-  148 (300)
                      ...|++|+.||.....   ..+.   ...+..|+.....+.+.    +.+..  ..++|++|+....         .+. 
T Consensus        69 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~---------~~~~  137 (239)
T 2ekp_A           69 GGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG--WGRVLFIGSVTTF---------TAGG  137 (239)
T ss_dssp             TSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------SCCT
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhc---------cCCC
Confidence            5799999999875321   1222   33456666555554444    44443  2467777764431         111 


Q ss_pred             -CCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          149 -PAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       149 -p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                       |....++.++.-...+.+.+++++.
T Consensus       138 ~~~~~~Y~~sK~a~~~~~~~la~e~~  163 (239)
T 2ekp_A          138 PVPIPAYTTAKTALLGLTRALAKEWA  163 (239)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHhh
Confidence             2222455566666667777777763

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.94  E-value=5e-05  Score=66.72  Aligned_cols=93  Identities=13%  Similarity=0.134  Sum_probs=61.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeE-EEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI-LHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~-l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      .|||+|+| +|.+|..++..|...|+       + +.++|+++  ++++..    ....     .+...++..++++++|
T Consensus        10 ~m~i~iiG-~G~mG~~~a~~l~~~g~-------~~v~~~~~~~--~~~~~~----~~~~-----g~~~~~~~~~~~~~~D   70 (266)
T 3d1l_A           10 DTPIVLIG-AGNLATNLAKALYRKGF-------RIVQVYSRTE--ESAREL----AQKV-----EAEYTTDLAEVNPYAK   70 (266)
T ss_dssp             GCCEEEEC-CSHHHHHHHHHHHHHTC-------CEEEEECSSH--HHHHHH----HHHT-----TCEEESCGGGSCSCCS
T ss_pred             CCeEEEEc-CCHHHHHHHHHHHHCCC-------eEEEEEeCCH--HHHHHH----HHHc-----CCceeCCHHHHhcCCC
Confidence            47999999 79999999999987764       4 78999863  433322    1110     1234557778889999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      +||++...                ....++++.+.+..+++..++..+|
T Consensus        71 vvi~av~~----------------~~~~~v~~~l~~~~~~~~ivv~~s~  103 (266)
T 3d1l_A           71 LYIVSLKD----------------SAFAELLQGIVEGKREEALMVHTAG  103 (266)
T ss_dssp             EEEECCCH----------------HHHHHHHHHHHTTCCTTCEEEECCT
T ss_pred             EEEEecCH----------------HHHHHHHHHHHhhcCCCcEEEECCC
Confidence            99998411                0124555666665545666666665

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.94  E-value=2.4e-05  Score=69.17  Aligned_cols=151  Identities=13%  Similarity=0.053  Sum_probs=82.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChh-------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAV-------   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~-------   76 (300)
                      +.+++.||||+|.+|.+++..|++.|.       +|+++|+++  ++++....++.... ....++.-..+..       
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~-~~~~Dv~d~~~v~~~~~~~~   77 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGA-------RVVICDKDE--SGGRALEQELPGAV-FILCDVTQEDDVKTLVSETI   77 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHCTTEE-EEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcCCe-EEEcCCCCHHHHHHHHHHHH
Confidence            346899999999999999999999875       789999863  33332222221100 0000000000111       


Q ss_pred             hhcCCCcEEEEeCCCCCCCC----CcH---HHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEecCchhhHHHHHHHHCCCC
Q 022227           77 EACTGVNIAVMVGGFPRKEG----MER---KDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALILKEFAPSI  148 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~g----~~r---~dl~~~N~~i~~~i~~~i~~~~-~~~~~viv~sNP~~~~~~~~~~~~~~~  148 (300)
                      +.+...|++|+.||.....+    .+.   ...+..|+.....+.+.+.++- ....++|++|+....       .  +.
T Consensus        78 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~-------~--~~  148 (270)
T 1yde_A           78 RRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGA-------I--GQ  148 (270)
T ss_dssp             HHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHH-------H--CC
T ss_pred             HHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCcccc-------C--CC
Confidence            22347899999998753211    122   3456777776666665554321 002367777754321       1  12


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          149 PAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      |....|+.++.-...+.+.++.++.
T Consensus       149 ~~~~~Y~asKaa~~~~~~~la~e~~  173 (270)
T 1yde_A          149 AQAVPYVATKGAVTAMTKALALDES  173 (270)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHhh
Confidence            2222355555555666667776653

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.94  E-value=0.00018  Score=63.56  Aligned_cols=158  Identities=16%  Similarity=0.137  Sum_probs=88.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC-----------chhhhhhhhhhhhhhccCC---cccE
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-----------AAEALNGVKMELVDAAFPL---LKGV   69 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~-----------~~~~l~g~~~dl~~~~~~~---~~~v   69 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|+++|++.           +.+.++....++.......   ..++
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~   82 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA-------DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDT   82 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC-------EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCC
Confidence            456899999999999999999999875       789998731           1233332222222211000   0000


Q ss_pred             EEeCCh-------hhhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEecC
Q 022227           70 VATTDA-------VEACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        70 ~~~~~~-------~~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i----~~~i~~~~~~~~~viv~sN  132 (300)
                      .-..+.       .+.+...|++|+.||......   .+.   ...+..|+.....+    .+.+.+... ..++|++|+
T Consensus        83 ~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-~g~iv~isS  161 (277)
T 3tsc_A           83 RDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGR-GGSIILISS  161 (277)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC-CCEEEEEcc
Confidence            000011       122346899999999754321   222   23466676554444    444555543 357888876


Q ss_pred             chhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          133 PANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       133 P~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      ....         .+.|....|+.++.-...+.+.+|++++  +..|+
T Consensus       162 ~~~~---------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~  198 (277)
T 3tsc_A          162 AAGM---------KMQPFMIHYTASKHAVTGLARAFAAELG--KHSIR  198 (277)
T ss_dssp             GGGT---------SCCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             HhhC---------CCCCCchhhHHHHHHHHHHHHHHHHHhC--ccCeE
Confidence            5431         1233222456666666677777888774  33454

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.94  E-value=2e-05  Score=69.19  Aligned_cols=155  Identities=12%  Similarity=0.061  Sum_probs=86.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEE-ecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh-
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~-D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a-   78 (300)
                      +.+++.||||+|.||.+++..|++.|.       ++++. +.+  .++++....++......   ...+++-..+..+. 
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~vv~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~   73 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGY-------NIVINYARS--KKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMF   73 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESSC--HHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-------EEEEEcCCC--HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence            346899999999999999999999875       67775 554  34444333333321100   00011000111222 


Q ss_pred             ------cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHH
Q 022227           79 ------CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        79 ------~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                            +...|++|+.||.....   ..+.   ...+..|+.....+.+.+    ++..  ..++|++|+....      
T Consensus        74 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~------  145 (258)
T 3oid_A           74 QQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNG--GGHIVSISSLGSI------  145 (258)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT--CEEEEEEEEGGGT------
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECchhhC------
Confidence                  23569999999864322   1222   234667766655555554    4432  3567777754321      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                         .+.|....|+.++.-...+.+.+|.+++  +..|+
T Consensus       146 ---~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~  178 (258)
T 3oid_A          146 ---RYLENYTTVGVSKAALEALTRYLAVELS--PKQII  178 (258)
T ss_dssp             ---SBCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEE
T ss_pred             ---CCCCCcHHHHHHHHHHHHHHHHHHHHHh--hcCcE
Confidence               1223223456666666777788888874  44555

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=97.93  E-value=4.4e-05  Score=68.18  Aligned_cols=158  Identities=11%  Similarity=0.070  Sum_probs=85.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEe-cCCchhhhhhhhhhhhhhcc----CCcccEEEeC----
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLD-IPPAAEALNGVKMELVDAAF----PLLKGVVATT----   73 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D-~~~~~~~l~g~~~dl~~~~~----~~~~~v~~~~----   73 (300)
                      ++.+++.||||+|.||..++..|++.|.       .|++.| +++  ++++....++.....    ....++.-..    
T Consensus         7 l~~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~   77 (291)
T 1e7w_A            7 PTVPVALVTGAAKRLGRSIAEGLHAEGY-------AVCLHYHRSA--AEANALSATLNARRPNSAITVQADLSNVATAPV   77 (291)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSCH--HHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-------eEEEEcCCCH--HHHHHHHHHHhhhcCCeeEEEEeecCCcccccc
Confidence            3556899999999999999999999875       788998 753  444433333321000    0001111011    


Q ss_pred             -------------Chhhh-------cCCCcEEEEeCCCCCCC---CCc--------------H---HHHHHhhHHHHHHH
Q 022227           74 -------------DAVEA-------CTGVNIAVMVGGFPRKE---GME--------------R---KDVMSKNVSIYKAQ  113 (300)
Q Consensus        74 -------------~~~~a-------~~~aDvVi~~ag~~~~~---g~~--------------r---~dl~~~N~~i~~~i  113 (300)
                                   +..+.       +...|++|+.||.....   ..+              .   ...+..|+.....+
T Consensus        78 ~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l  157 (291)
T 1e7w_A           78 SGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFL  157 (291)
T ss_dssp             C----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHH
T ss_pred             cccccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHH
Confidence                         11122       23789999999975321   112              2   23456676555555


Q ss_pred             HHHHh----hhcC----CCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          114 ASALE----QHAA----PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       114 ~~~i~----~~~~----~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      .+.+.    +...    +...+|++|+....         .+.|....|+.++.-...+.+.++.+++  +..|+
T Consensus       158 ~~~~~~~m~~~~~~~~~~~g~Iv~isS~~~~---------~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~  221 (291)
T 1e7w_A          158 IKAFAHRVAGTPAKHRGTNYSIINMVDAMTN---------QPLLGYTIYTMAKGALEGLTRSAALELA--PLQIR  221 (291)
T ss_dssp             HHHHHHHHHTSCGGGSCSCEEEEEECCTTTT---------SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             HHHHHHHHHhcCCCCCCCCcEEEEEechhhc---------CCCCCCchhHHHHHHHHHHHHHHHHHHH--hcCeE
Confidence            54443    3320    02467777764421         1223223455566555666777777764  33454

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=97.93  E-value=5.2e-05  Score=69.03  Aligned_cols=35  Identities=20%  Similarity=0.160  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEe-cC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLD-IP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D-~~   45 (300)
                      +.+++.||||+|.||..++..|+..|.       +|++.| ++
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~-------~Vv~~~~r~   80 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY-------AVCLHYHRS   80 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEcCCC
Confidence            446899999999999999999999875       788988 65

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=97.93  E-value=9.9e-05  Score=64.99  Aligned_cols=153  Identities=16%  Similarity=0.078  Sum_probs=82.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh-----
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV-----   76 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~-----   76 (300)
                      .++|.||||+|.+|.+++..|++.|.       ++++.+.. +.+.++....++......   ...++.-..+..     
T Consensus        26 ~k~vlITGas~gIG~a~a~~l~~~G~-------~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~   97 (272)
T 4e3z_A           26 TPVVLVTGGSRGIGAAVCRLAARQGW-------RVGVNYAA-NREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSA   97 (272)
T ss_dssp             SCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESS-CHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCC-ChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence            35799999999999999999999875       67666332 234444333333221100   000100000111     


Q ss_pred             --hhcCCCcEEEEeCCCCCCCC----CcH---HHHHHhhHHHHHHHHHHHhhh----c-CCCeEEEEecCchhhHHHHHH
Q 022227           77 --EACTGVNIAVMVGGFPRKEG----MER---KDVMSKNVSIYKAQASALEQH----A-APNCKVLVVANPANTNALILK  142 (300)
Q Consensus        77 --~a~~~aDvVi~~ag~~~~~g----~~r---~dl~~~N~~i~~~i~~~i~~~----~-~~~~~viv~sNP~~~~~~~~~  142 (300)
                        +.+...|++|+.||....++    .+.   .+.+..|+.....+.+.+.+.    . .+..++|++|+....      
T Consensus        98 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~------  171 (272)
T 4e3z_A           98 VDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAI------  171 (272)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHH------
T ss_pred             HHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhc------
Confidence              22347899999999754321    122   345667766655555444332    1 123567887765431      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                       . +..+....++.++.-...+.+.+++++.
T Consensus       172 -~-~~~~~~~~Y~asKaa~~~~~~~la~e~~  200 (272)
T 4e3z_A          172 -L-GSATQYVDYAASKAAIDTFTIGLAREVA  200 (272)
T ss_dssp             -H-CCTTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             -c-CCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence             1 1111112355666666667777777763

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.92  E-value=3.7e-05  Score=68.27  Aligned_cols=159  Identities=16%  Similarity=0.134  Sum_probs=84.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc----ccEEEeCChhhh-
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL----KGVVATTDAVEA-   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~----~~v~~~~~~~~a-   78 (300)
                      +.++|.||||+|.+|..++..|+..|.       +|+++|+++  ++++....++........    .+++-..+..+. 
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~   97 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA-------HVVVTARSK--ETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFV   97 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHH
Confidence            346899999999999999999998875       799999863  444433222221110000    000000011122 


Q ss_pred             ------cCCCcEEEEe-CCCCCCC--CCcH---HHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEecCchhhHHHHHHHHC
Q 022227           79 ------CTGVNIAVMV-GGFPRKE--GMER---KDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        79 ------~~~aDvVi~~-ag~~~~~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~-~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                            +.+.|++|+. ||....+  ..+.   ...+..|+.....+.+.+.+.-. ....+|++|+....         
T Consensus        98 ~~~~~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~---------  168 (286)
T 1xu9_A           98 AQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGK---------  168 (286)
T ss_dssp             HHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGT---------
T ss_pred             HHHHHHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccc---------
Confidence                  2378999998 6764322  1222   34566776665555554433210 02357777754321         


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      .+.|....|+.++.-...+...++.+++.....|+
T Consensus       169 ~~~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~  203 (286)
T 1xu9_A          169 VAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVS  203 (286)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCE
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeE
Confidence            12232234555555555666666766633334454

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.92  E-value=8.4e-05  Score=66.58  Aligned_cols=153  Identities=11%  Similarity=0.067  Sum_probs=85.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc----------hhhhhhhhhhhhhhccC---CcccEE
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA----------AEALNGVKMELVDAAFP---LLKGVV   70 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~----------~~~l~g~~~dl~~~~~~---~~~~v~   70 (300)
                      +.+++.||||+|.||.+++..|++.|.       .++++|+++.          .++++....++......   ...+++
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~   99 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGA-------DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVR   99 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCC
Confidence            346899999999999999999999875       7899987521          23333222223221100   000110


Q ss_pred             EeCChhh-------hcCCCcEEEEeCCCCCCC----CCcH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecC
Q 022227           71 ATTDAVE-------ACTGVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVAN  132 (300)
Q Consensus        71 ~~~~~~~-------a~~~aDvVi~~ag~~~~~----g~~r---~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sN  132 (300)
                      -..+..+       .+...|++|+.||.....    ..+.   ...+..|+.....+.+.    +.+... ..++|++|+
T Consensus       100 ~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-~g~Iv~isS  178 (299)
T 3t7c_A          100 DFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKR-GGSIVFTSS  178 (299)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTS-CEEEEEECC
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEECC
Confidence            0001112       234789999999975322    1222   34566776655555554    343332 356787776


Q ss_pred             chhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          133 PANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       133 P~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ....         .+.|..-.|+.++.-...+.+.+|.+++
T Consensus       179 ~~~~---------~~~~~~~~Y~asKaa~~~l~~~la~e~~  210 (299)
T 3t7c_A          179 IGGL---------RGAENIGNYIASKHGLHGLMRTMALELG  210 (299)
T ss_dssp             GGGT---------SCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             hhhc---------cCCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence            4431         1233222455565555667777777764

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.92  E-value=8.8e-05  Score=64.60  Aligned_cols=142  Identities=15%  Similarity=0.146  Sum_probs=81.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCCh---hhhcC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDA---VEACT   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~---~~a~~   80 (300)
                      +.++|.||||+|++|.+++..|++.|.       +|+++|+++  +.++.    +.... .. .++  ..+.   .+.+.
T Consensus        18 ~~k~vlVTGas~gIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~----~~~~~-~~-~D~--~~~~~~~~~~~~   80 (249)
T 1o5i_A           18 RDKGVLVLAASRGIGRAVADVLSQEGA-------EVTICARNE--ELLKR----SGHRY-VV-CDL--RKDLDLLFEKVK   80 (249)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHH----TCSEE-EE-CCT--TTCHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHh----hCCeE-EE-eeH--HHHHHHHHHHhc
Confidence            346899999999999999999998875       789998863  22211    10000 00 111  1122   23344


Q ss_pred             CCcEEEEeCCCCCCCC---CcH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCC
Q 022227           81 GVNIAVMVGGFPRKEG---MER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPA  150 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~  150 (300)
                      +.|++|+.||......   .+.   ...+..|+..    ++.+.+.+++..  ..++|++|+....         .+.|.
T Consensus        81 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~---------~~~~~  149 (249)
T 1o5i_A           81 EVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG--WGRIVAITSFSVI---------SPIEN  149 (249)
T ss_dssp             CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------SCCTT
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEcchHhc---------CCCCC
Confidence            8999999999754221   122   2345566544    445566666553  2467777764421         12232


Q ss_pred             CcEEeeehhhHHHHHHHHHHHcC
Q 022227          151 KNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       151 ~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ...++.++.....+.+.+++++.
T Consensus       150 ~~~Y~~sK~a~~~~~~~la~e~~  172 (249)
T 1o5i_A          150 LYTSNSARMALTGFLKTLSFEVA  172 (249)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CchHHHHHHHHHHHHHHHHHHhh
Confidence            22345555555566667777653

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.92  E-value=3.9e-05  Score=68.04  Aligned_cols=155  Identities=12%  Similarity=0.111  Sum_probs=87.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhhc-
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC-   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a~-   79 (300)
                      +.+++.||||+|.||..++..|++.|.       .|++.|+++  ++++....++......   ...++.-..+..+.+ 
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~  102 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA-------HVILHGVKP--GSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIE  102 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESST--TTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHH
Confidence            456899999999999999999999875       799999864  3444333333221100   000110001111122 


Q ss_pred             -----CCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           80 -----TGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        80 -----~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                           ...|++|+.||......   .+.   ...+..|+.....+.+.    +.+..  ..++|++|+....        
T Consensus       103 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~Iv~isS~~~~--------  172 (275)
T 4imr_A          103 RAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARK--WGRVVSIGSINQL--------  172 (275)
T ss_dssp             HHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT--------
T ss_pred             HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECCHHhC--------
Confidence                 36899999999754221   222   23466676555555444    44443  3578888764431        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                       ...+....|+.++.-...+.+.+|.+++  +..|+
T Consensus       173 -~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~  205 (275)
T 4imr_A          173 -RPKSVVTAYAATKAAQHNLIQSQARDFA--GDNVL  205 (275)
T ss_dssp             -SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             -CCCCCchhhHHHHHHHHHHHHHHHHHhc--ccCcE
Confidence             1112112356666666677777888774  33454

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.91  E-value=6e-05  Score=65.95  Aligned_cols=122  Identities=12%  Similarity=0.084  Sum_probs=70.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh-
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-   78 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a-   78 (300)
                      ++.+++.||||+|.||.+++..|++.|.       +|+++|+++  ++++....++......   ...++.-..+..+. 
T Consensus         4 l~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~   74 (257)
T 3imf_A            4 MKEKVVIITGGSSGMGKGMATRFAKEGA-------RVVITGRTK--EKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMI   74 (257)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence            3456899999999999999999999875       789999863  4444333333221100   00011000111222 


Q ss_pred             ------cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCch
Q 022227           79 ------CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPA  134 (300)
Q Consensus        79 ------~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~  134 (300)
                            +...|++|+.||.....   ..+.   ...+..|+.....+.+.+    .+... ..++|++|...
T Consensus        75 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~  145 (257)
T 3imf_A           75 EQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGI-KGNIINMVATY  145 (257)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CCEEEEECCGG
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCC-CcEEEEECchh
Confidence                  23789999999975421   1222   335667776666555554    23332 34678877654

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.91  E-value=7e-05  Score=65.33  Aligned_cols=145  Identities=11%  Similarity=0.066  Sum_probs=82.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhh-------h
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE-------A   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~-------a   78 (300)
                      +++.||||+|.+|.+++..|++.|.       +|++.|+++  ++++... ++....... ..+ -..+..+       .
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~-~l~~~~~~~-~~~-d~~~v~~~~~~~~~~   69 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH-------TVACHDESF--KQKDELE-AFAETYPQL-KPM-SEQEPAELIEAVTSA   69 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC-------EEEECCGGG--GSHHHHH-HHHHHCTTS-EEC-CCCSHHHHHHHHHHH
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHH-HHHhcCCcE-EEE-CHHHHHHHHHHHHHH
Confidence            4799999999999999999999875       789998863  3333221 232111000 000 1112222       2


Q ss_pred             cCCCcEEEEeCCCC-CCC---CCcH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHHHHHCCC
Q 022227           79 CTGVNIAVMVGGFP-RKE---GMER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKEFAPS  147 (300)
Q Consensus        79 ~~~aDvVi~~ag~~-~~~---g~~r---~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~  147 (300)
                      +...|++|+.||.. ...   ..+.   ...+..|+.....+.+.    +.+..  ..++|++|+....         .+
T Consensus        70 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~---------~~  138 (254)
T 1zmt_A           70 YGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK--SGHIIFITSATPF---------GP  138 (254)
T ss_dssp             HSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCSTTT---------SC
T ss_pred             hCCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECCcccc---------cC
Confidence            34789999999975 321   1122   34566676655555444    44443  2467888765431         12


Q ss_pred             CCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          148 IPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       148 ~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .|....|+.++.-...+.+.++++++
T Consensus       139 ~~~~~~Y~~sK~a~~~~~~~la~e~~  164 (254)
T 1zmt_A          139 WKELSTYTSARAGACTLANALSKELG  164 (254)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhh
Confidence            23222355555555667777777763

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.91  E-value=4.9e-05  Score=68.36  Aligned_cols=67  Identities=21%  Similarity=0.221  Sum_probs=48.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +++||+||| +|.+|..++..|+..|+       +|.++|+++  ++++.    +....     .....++..+++++||
T Consensus         6 ~~~~I~iIG-~G~mG~~~a~~l~~~G~-------~V~~~dr~~--~~~~~----~~~~g-----~~~~~~~~~e~~~~aD   66 (303)
T 3g0o_A            6 TDFHVGIVG-LGSMGMGAARSCLRAGL-------STWGADLNP--QACAN----LLAEG-----ACGAAASAREFAGVVD   66 (303)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHH----HHHTT-----CSEEESSSTTTTTTCS
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEECCH--HHHHH----HHHcC-----CccccCCHHHHHhcCC
Confidence            457999999 79999999999998875       799999863  43332    22111     0112456778899999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +||++.
T Consensus        67 vvi~~v   72 (303)
T 3g0o_A           67 ALVILV   72 (303)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            999984

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.91  E-value=7.7e-05  Score=66.88  Aligned_cols=92  Identities=15%  Similarity=0.219  Sum_probs=60.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .+||+||| +|.+|..++..|+..|+       +|+++|+++  ++++.    +.+.      .+...++..++++ +|+
T Consensus        15 ~~~I~vIG-~G~mG~~~A~~l~~~G~-------~V~~~dr~~--~~~~~----~~~~------g~~~~~~~~~~~~-aDv   73 (296)
T 3qha_A           15 QLKLGYIG-LGNMGAPMATRMTEWPG-------GVTVYDIRI--EAMTP----LAEA------GATLADSVADVAA-ADL   73 (296)
T ss_dssp             CCCEEEEC-CSTTHHHHHHHHTTSTT-------CEEEECSST--TTSHH----HHHT------TCEECSSHHHHTT-SSE
T ss_pred             CCeEEEEC-cCHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHH----HHHC------CCEEcCCHHHHHh-CCE
Confidence            36899999 89999999999988764       689999874  33332    1111      2345567888888 999


Q ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      ||++...+               ..++++++.+.+..+++..+|..|+
T Consensus        74 vi~~vp~~---------------~~~~~v~~~l~~~l~~g~ivv~~st  106 (296)
T 3qha_A           74 IHITVLDD---------------AQVREVVGELAGHAKPGTVIAIHST  106 (296)
T ss_dssp             EEECCSSH---------------HHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred             EEEECCCh---------------HHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            99984211               1223444555555444555555554

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.91  E-value=6.8e-05  Score=66.78  Aligned_cols=64  Identities=14%  Similarity=0.216  Sum_probs=48.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+||| +|.+|..++..|...|.       +|+++|+++  ++++.    +.+.      .+...++..+++++||+|
T Consensus         2 ~~i~iIG-~G~mG~~~a~~l~~~G~-------~V~~~dr~~--~~~~~----~~~~------g~~~~~~~~~~~~~aDvv   61 (287)
T 3pef_A            2 QKFGFIG-LGIMGSAMAKNLVKAGC-------SVTIWNRSP--EKAEE----LAAL------GAERAATPCEVVESCPVT   61 (287)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSG--GGGHH----HHHT------TCEECSSHHHHHHHCSEE
T ss_pred             CEEEEEe-ecHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHHH----HHHC------CCeecCCHHHHHhcCCEE
Confidence            6999999 79999999999998774       799999864  33332    2111      234556788889999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++.
T Consensus        62 i~~v   65 (287)
T 3pef_A           62 FAML   65 (287)
T ss_dssp             EECC
T ss_pred             EEEc
Confidence            9974

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=97.91  E-value=3.9e-05  Score=67.43  Aligned_cols=152  Identities=14%  Similarity=0.092  Sum_probs=83.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhh--
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a--   78 (300)
                      +.++|.||||+|.||.+++..|++.|.       ++++.+... .+.++....++......   ...++.-..+..++  
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~-------~v~i~~~r~-~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~   96 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGF-------NIGVHYHRD-AAGAQETLNAIVANGGNGRLLSFDVANREQCREVLE   96 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCc-hHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence            346899999999999999999999875       565554332 33333333333221100   00011000111222  


Q ss_pred             -----cCCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           79 -----CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        79 -----~~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                           +...|++|+.||......   .+   -...+..|+.....+.+.+    .+... ..++|++|+....       
T Consensus        97 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~-------  168 (267)
T 4iiu_A           97 HEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQ-GGRIITLSSVSGV-------  168 (267)
T ss_dssp             HHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCHHHH-------
T ss_pred             HHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEEcchHhc-------
Confidence                 237899999999764321   12   2345677776666655543    22222 4577887764421       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .  +.|....|+.++.-...+.+.+++++.
T Consensus       169 ~--~~~~~~~Y~asKaa~~~~~~~la~e~~  196 (267)
T 4iiu_A          169 M--GNRGQVNYSAAKAGIIGATKALAIELA  196 (267)
T ss_dssp             H--CCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             c--CCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence            1  223223456666656667777777764

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=97.91  E-value=3.3e-05  Score=67.74  Aligned_cols=155  Identities=12%  Similarity=0.045  Sum_probs=86.8

Q ss_pred             CCCcEEEEEcCC--ChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc----CCcccEEEeCCh-
Q 022227            3 KEPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF----PLLKGVVATTDA-   75 (300)
Q Consensus         3 ~~~~kV~IiGAa--G~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~----~~~~~v~~~~~~-   75 (300)
                      .+.+++.||||+  |.+|.+++..|+..|.       .+++++.+.. +.++....++.....    ....++.-..+. 
T Consensus        18 l~~k~vlITGas~~~giG~~~a~~l~~~G~-------~v~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~   89 (267)
T 3gdg_A           18 LKGKVVVVTGASGPKGMGIEAARGCAEMGA-------AVAITYASRA-QGAEENVKELEKTYGIKAKAYKCQVDSYESCE   89 (267)
T ss_dssp             CTTCEEEETTCCSSSSHHHHHHHHHHHTSC-------EEEECBSSSS-SHHHHHHHHHHHHHCCCEECCBCCTTCHHHHH
T ss_pred             cCCCEEEEECCCCCCChHHHHHHHHHHCCC-------eEEEEeCCcc-hhHHHHHHHHHHhcCCceeEEecCCCCHHHHH
Confidence            345789999998  8999999999998875       7888887642 111222222321100    000111101111 


Q ss_pred             ------hhhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHH
Q 022227           76 ------VEACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNAL  139 (300)
Q Consensus        76 ------~~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~  139 (300)
                            .+.+...|++|+.||.....   ..+.   ...+..|+.....+.+.+    .+..  ..++|++++....   
T Consensus        90 ~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~---  164 (267)
T 3gdg_A           90 KLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERG--TGSLVITASMSGH---  164 (267)
T ss_dssp             HHHHHHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGT---
T ss_pred             HHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcC--CceEEEEcccccc---
Confidence                  22234679999999975422   1122   335666766555555444    5543  2467777765431   


Q ss_pred             HHHHHCCCCCCC-cEEeeehhhHHHHHHHHHHHcCCC
Q 022227          140 ILKEFAPSIPAK-NITCLTRLDHNRALGQISEKLNVQ  175 (300)
Q Consensus       140 ~~~~~~~~~p~~-~i~~~t~ld~~R~~~~la~~l~v~  175 (300)
                           .+..|+. ..|+.++.-...+.+.++++++-.
T Consensus       165 -----~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~  196 (267)
T 3gdg_A          165 -----IANFPQEQTSYNVAKAGCIHMARSLANEWRDF  196 (267)
T ss_dssp             -----SCCSSSCCHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             -----ccCCCCCCCcchHHHHHHHHHHHHHHHHhccC
Confidence                 1222222 246666666677888888888633

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=97.90  E-value=5e-05  Score=70.40  Aligned_cols=113  Identities=12%  Similarity=0.208  Sum_probs=67.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchh---hhhhhhhhhhhh----ccCCcccEEEeCChhh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE---ALNGVKMELVDA----AFPLLKGVVATTDAVE   77 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~---~l~g~~~dl~~~----~~~~~~~v~~~~~~~~   77 (300)
                      ++||+|+| +|.+|+.++..|+..|...+....+|.++|+++..+   +++.....-...    ...+...+..+++..+
T Consensus        21 ~~kI~iIG-aG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~e   99 (375)
T 1yj8_A           21 PLKISILG-SGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLAS   99 (375)
T ss_dssp             CBCEEEEC-CSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHH
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHH
Confidence            46899999 799999999999887621100001689999864200   222111100000    0011235677778888


Q ss_pred             hcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhh----hcCCCeEEEEecCch
Q 022227           78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQ----HAAPNCKVLVVANPA  134 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~----~~~~~~~viv~sNP~  134 (300)
                      ++++||+||++.  |   .           ..++++++.+..    +.+++..+|..+|..
T Consensus       100 a~~~aDvVilav--~---~-----------~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi  144 (375)
T 1yj8_A          100 VINDADLLIFIV--P---C-----------QYLESVLASIKESESIKIASHAKAISLTKGF  144 (375)
T ss_dssp             HHTTCSEEEECC--C---H-----------HHHHHHHHHHTC---CCCCTTCEEEECCCSC
T ss_pred             HHcCCCEEEEcC--C---H-----------HHHHHHHHHHhhhhhccCCCCCEEEEeCCcc
Confidence            899999999983  1   0           245566677766    555566677777643

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=97.89  E-value=0.0001  Score=64.00  Aligned_cols=153  Identities=15%  Similarity=0.090  Sum_probs=86.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhhc-
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC-   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a~-   79 (300)
                      +.+++.||||+|.+|.+++..|++.|.       .+++.+... .+.++....++......   ...++.-..+..+.+ 
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~~G~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   77 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLANDGA-------LVAIHYGNR-KEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYS   77 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-SHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-------eEEEEeCCc-hHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHH
Confidence            456899999999999999999998875       576654332 23343333333321100   000000000111111 


Q ss_pred             ------------CCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           80 ------------TGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        80 ------------~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                                  ...|++|+.||......   .+.   ...+..|+.....+.+.+.+.-.+..++|++|+....     
T Consensus        78 ~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~-----  152 (255)
T 3icc_A           78 SLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATR-----  152 (255)
T ss_dssp             HHHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGT-----
T ss_pred             HHHHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhc-----
Confidence                        12899999999753221   122   3456788888888888776653224577887765431     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                          .+.|....|+.++.-...+.+.+++++.
T Consensus       153 ----~~~~~~~~Y~asKaa~~~~~~~la~e~~  180 (255)
T 3icc_A          153 ----ISLPDFIAYSMTKGAINTMTFTLAKQLG  180 (255)
T ss_dssp             ----SCCTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ----cCCCCcchhHHhHHHHHHHHHHHHHHHH
Confidence                1233223455566666667777777764

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.89  E-value=4.6e-05  Score=64.53  Aligned_cols=72  Identities=18%  Similarity=0.144  Sum_probs=47.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+|+||+|++|+.++..|...+.       ++.++|+++  ++++....++.. ... ..++.. ++..++++++|+|
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~-------~V~~~~r~~--~~~~~~~~~~~~-~~~-~~~~~~-~~~~~~~~~~D~V   68 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH-------EIVVGSRRE--EKAEAKAAEYRR-IAG-DASITG-MKNEDAAEACDIA   68 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEESSH--HHHHHHHHHHHH-HHS-SCCEEE-EEHHHHHHHCSEE
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcc-ccc-cCCCCh-hhHHHHHhcCCEE
Confidence            4899999889999999999987764       789999863  333322111110 000 012332 3567788999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++.
T Consensus        69 i~~~   72 (212)
T 1jay_A           69 VLTI   72 (212)
T ss_dssp             EECS
T ss_pred             EEeC
Confidence            9985

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.89  E-value=4.4e-05  Score=67.08  Aligned_cols=149  Identities=13%  Similarity=0.063  Sum_probs=84.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV----   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~----   76 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|++.|+++  ++++....++......   ...+++-..+..    
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~   80 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGA-------DLVLAARTV--ERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVD   80 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence            356899999999999999999999875       799999863  4554443344321100   000110001111    


Q ss_pred             ---hhcCCCcEEEEeCCCCCC--C--CCcH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           77 ---EACTGVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        77 ---~a~~~aDvVi~~ag~~~~--~--g~~r---~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                         +.+...|++|+.||....  +  ..+.   .+.+..|+.....+.+.    +.+.   ..++|++|+....      
T Consensus        81 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~---~g~iv~isS~~~~------  151 (264)
T 3ucx_A           81 ETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEES---KGAVVNVNSMVVR------  151 (264)
T ss_dssp             HHHHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH---TCEEEEECCGGGG------
T ss_pred             HHHHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc---CCEEEEECcchhc------
Confidence               223478999999987421  1  1222   23466676655555544    3333   2467777765431      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                         .+.|....|+.++.-...+.+.+|++++
T Consensus       152 ---~~~~~~~~Y~asKaa~~~~~~~la~e~~  179 (264)
T 3ucx_A          152 ---HSQAKYGAYKMAKSALLAMSQTLATELG  179 (264)
T ss_dssp             ---CCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---cCCCccHHHHHHHHHHHHHHHHHHHHhC
Confidence               1223222355555555666777777764

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.89  E-value=8.6e-05  Score=70.39  Aligned_cols=105  Identities=14%  Similarity=0.094  Sum_probs=68.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhh--------hhhhhccC--CcccEEEeCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM--------ELVDAAFP--LLKGVVATTD   74 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~--------dl~~~~~~--~~~~v~~~~~   74 (300)
                      +.+|+|+| .|+||..++..|+..|.       +++.+|+++  ++.+....        +|.+....  ...+++.+++
T Consensus        21 m~~IaViG-lGYVGLp~A~~~A~~G~-------~V~g~Did~--~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~   90 (444)
T 3vtf_A           21 MASLSVLG-LGYVGVVHAVGFALLGH-------RVVGYDVNP--SIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAES   90 (444)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHTC-------EEEEECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSS
T ss_pred             CCEEEEEc-cCHHHHHHHHHHHhCCC-------cEEEEECCH--HHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcC
Confidence            46999999 89999999999998775       799999974  44432211        01110000  1246788889


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCCC-cHHHHHHhhHHHHHHHHHHHhhhcC
Q 022227           75 AVEACTGVNIAVMVGGFPRKEGM-ERKDVMSKNVSIYKAQASALEQHAA  122 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~g~-~r~dl~~~N~~i~~~i~~~i~~~~~  122 (300)
                      ..+++++||++|++.+.|..+.. .....+.   ...+.+++.++..++
T Consensus        91 ~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~---~a~~~I~~~l~~~~~  136 (444)
T 3vtf_A           91 AEEAVAATDATFIAVGTPPAPDGSADLRYVE---AAARAVGRGIRAKGR  136 (444)
T ss_dssp             HHHHHHTSSEEEECCCCCBCTTSSBCCHHHH---HHHHHHHHHHHHHCS
T ss_pred             HHHHHhcCCceEEEecCCCCCCCCCCcHHHH---HHHHHHHHHHhhcCC
Confidence            99999999999999887754432 1122222   444666676765543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.89  E-value=9.1e-05  Score=67.17  Aligned_cols=70  Identities=19%  Similarity=0.226  Sum_probs=48.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhh-hcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE-ACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~-a~~~a   82 (300)
                      ..+||+||| +|.+|.+++..|...|+.     .+|.++|.++  ++++. +.++  ..     .....++..+ ++++|
T Consensus        32 ~~~kI~IIG-~G~mG~slA~~l~~~G~~-----~~V~~~dr~~--~~~~~-a~~~--G~-----~~~~~~~~~~~~~~~a   95 (314)
T 3ggo_A           32 SMQNVLIVG-VGFMGGSFAKSLRRSGFK-----GKIYGYDINP--ESISK-AVDL--GI-----IDEGTTSIAKVEDFSP   95 (314)
T ss_dssp             SCSEEEEES-CSHHHHHHHHHHHHTTCC-----SEEEEECSCH--HHHHH-HHHT--TS-----CSEEESCTTGGGGGCC
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHhCCCC-----CEEEEEECCH--HHHHH-HHHC--CC-----cchhcCCHHHHhhccC
Confidence            347999999 799999999999988752     1799999863  33321 1111  00     0023456667 89999


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |+||++.
T Consensus        96 DvVilav  102 (314)
T 3ggo_A           96 DFVMLSS  102 (314)
T ss_dssp             SEEEECS
T ss_pred             CEEEEeC
Confidence            9999984

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.88  E-value=0.00014  Score=62.43  Aligned_cols=120  Identities=18%  Similarity=0.139  Sum_probs=68.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC----cccEEEeCChhhh--
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL----LKGVVATTDAVEA--   78 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~----~~~v~~~~~~~~a--   78 (300)
                      ++++.||||+|.+|.+++..|++.|.       +|++.+++.  ++++....++.......    ..+++-..+..++  
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~   72 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY-------ALALGARSV--DRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSK   72 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHH
Confidence            35799999999999999999999875       789998863  44544433333111000    0011101112222  


Q ss_pred             -----cCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHHhhh--cCCCeEEEEecCch
Q 022227           79 -----CTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQH--AAPNCKVLVVANPA  134 (300)
Q Consensus        79 -----~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~~~--~~~~~~viv~sNP~  134 (300)
                           +...|++|+.||......   .+.   ...+..|+.....+.+.+.++  .. ...+|++++..
T Consensus        73 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~ii~~sS~~  140 (235)
T 3l77_A           73 KVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRT-GGLALVTTSDV  140 (235)
T ss_dssp             -HHHHHSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCGG
T ss_pred             HHHHhcCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcEEEEecch
Confidence                 337899999999754221   122   335667766655555554332  11 23466666544

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.86  E-value=9.2e-05  Score=64.16  Aligned_cols=147  Identities=12%  Similarity=0.080  Sum_probs=85.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEE-e--cCCchhhhhhhhhhhhhhccCCcccEEEeCChh------
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-D--IPPAAEALNGVKMELVDAAFPLLKGVVATTDAV------   76 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~-D--~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~------   76 (300)
                      +++.||||+|.+|.+++..|++.|.       +|++. +  ++  .++++....++ ...     ++.-..+..      
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~~~~r~--~~~~~~~~~~~-~~~-----~~~~~~~v~~~~~~~   66 (244)
T 1zmo_A            2 VIALVTHARHFAGPAAVEALTQDGY-------TVVCHDASFAD--AAERQRFESEN-PGT-----IALAEQKPERLVDAT   66 (244)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC-------EEEECCGGGGS--HHHHHHHHHHS-TTE-----EECCCCCGGGHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-------EEEEecCCcCC--HHHHHHHHHHh-CCC-----cccCHHHHHHHHHHH
Confidence            5799999999999999999998875       78888 5  65  34444332222 100     010011111      


Q ss_pred             -hhcCCCcEEEEeCCCCCC---C---CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHH
Q 022227           77 -EACTGVNIAVMVGGFPRK---E---GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        77 -~a~~~aDvVi~~ag~~~~---~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                       +.+...|++|+.||....   .   ..+.   ...+..|+.....+.+.+    .+..  ..++|++|+-...      
T Consensus        67 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~------  138 (244)
T 1zmo_A           67 LQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAG--GASVIFITSSVGK------  138 (244)
T ss_dssp             GGGSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGT------
T ss_pred             HHHcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECChhhC------
Confidence             223468999999997543   1   1222   335667766555555444    3432  3567887764431      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                         .+.|....|+.++.-...+.+.++.++.  +..|+
T Consensus       139 ---~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~  171 (244)
T 1zmo_A          139 ---KPLAYNPLYGPARAATVALVESAAKTLS--RDGIL  171 (244)
T ss_dssp             ---SCCTTCTTHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             ---CCCCCchHHHHHHHHHHHHHHHHHHHHh--hcCcE
Confidence               1233333456666666667777777764  33454

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.86  E-value=0.00013  Score=66.07  Aligned_cols=66  Identities=17%  Similarity=0.265  Sum_probs=49.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +.+||+||| +|.+|..++..|...|.       +|.++|+++  ++++.    +.+.      .+...++..+++++||
T Consensus        30 ~~~~I~iIG-~G~mG~~~a~~l~~~G~-------~V~~~dr~~--~~~~~----l~~~------g~~~~~~~~e~~~~aD   89 (320)
T 4dll_A           30 YARKITFLG-TGSMGLPMARRLCEAGY-------ALQVWNRTP--ARAAS----LAAL------GATIHEQARAAARDAD   89 (320)
T ss_dssp             CCSEEEEEC-CTTTHHHHHHHHHHTTC-------EEEEECSCH--HHHHH----HHTT------TCEEESSHHHHHTTCS
T ss_pred             CCCEEEEEC-ccHHHHHHHHHHHhCCC-------eEEEEcCCH--HHHHH----HHHC------CCEeeCCHHHHHhcCC
Confidence            347999999 79999999999998774       799999863  33332    2211      2345668889999999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +||++.
T Consensus        90 vVi~~v   95 (320)
T 4dll_A           90 IVVSML   95 (320)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            999975

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.86  E-value=9.4e-05  Score=66.78  Aligned_cols=66  Identities=14%  Similarity=0.166  Sum_probs=49.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +++||+||| +|.+|..++..|+..|.       +|.++|+++  ++++.    +.+.      .+...++..+++++||
T Consensus        20 ~m~~I~iIG-~G~mG~~~A~~l~~~G~-------~V~~~dr~~--~~~~~----l~~~------g~~~~~~~~~~~~~aD   79 (310)
T 3doj_A           20 HMMEVGFLG-LGIMGKAMSMNLLKNGF-------KVTVWNRTL--SKCDE----LVEH------GASVCESPAEVIKKCK   79 (310)
T ss_dssp             CSCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSG--GGGHH----HHHT------TCEECSSHHHHHHHCS
T ss_pred             cCCEEEEEC-ccHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHH----HHHC------CCeEcCCHHHHHHhCC
Confidence            457999999 79999999999998875       799999864  33332    2211      2334567888899999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +||++.
T Consensus        80 vvi~~v   85 (310)
T 3doj_A           80 YTIAML   85 (310)
T ss_dssp             EEEECC
T ss_pred             EEEEEc
Confidence            999974

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.85  E-value=7.5e-05  Score=67.72  Aligned_cols=112  Identities=20%  Similarity=0.275  Sum_probs=68.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhh-h--hhhccCCcccEEEeCChhhhcC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME-L--VDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~d-l--~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      .++||+|+| +|.+|..++..|...|.       +|.++ .+  .+.++....+ +  ..........+..+++. ++++
T Consensus        18 ~~~kI~IiG-aGa~G~~~a~~L~~~G~-------~V~l~-~~--~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~   85 (318)
T 3hwr_A           18 QGMKVAIMG-AGAVGCYYGGMLARAGH-------EVILI-AR--PQHVQAIEATGLRLETQSFDEQVKVSASSDP-SAVQ   85 (318)
T ss_dssp             --CEEEEES-CSHHHHHHHHHHHHTTC-------EEEEE-CC--HHHHHHHHHHCEEEECSSCEEEECCEEESCG-GGGT
T ss_pred             cCCcEEEEC-cCHHHHHHHHHHHHCCC-------eEEEE-Ec--HhHHHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcC
Confidence            357999999 79999999999998764       78888 54  2333322110 0  00000112234455665 4579


Q ss_pred             CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                      ++|+||++.-.     .           .++++++.+..+-+++..++.++|..+... .+.+.
T Consensus        86 ~~D~vilavk~-----~-----------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~-~l~~~  132 (318)
T 3hwr_A           86 GADLVLFCVKS-----T-----------DTQSAALAMKPALAKSALVLSLQNGVENAD-TLRSL  132 (318)
T ss_dssp             TCSEEEECCCG-----G-----------GHHHHHHHHTTTSCTTCEEEEECSSSSHHH-HHHHH
T ss_pred             CCCEEEEEccc-----c-----------cHHHHHHHHHHhcCCCCEEEEeCCCCCcHH-HHHHH
Confidence            99999997411     1           124566667766555677888899887543 33444

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.84  E-value=0.00021  Score=63.15  Aligned_cols=150  Identities=10%  Similarity=0.024  Sum_probs=85.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC----cccEEEeCChh---
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL----LKGVVATTDAV---   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~----~~~v~~~~~~~---   76 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|++.|.+.  ++++....++.......    ..++.-..+..   
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~   96 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGC-------HTVIASRSL--PRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAV   96 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEESCH--HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence            346899999999999999999998875       789999863  34433333332211000    00110001111   


Q ss_pred             ----hhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEecCchhhHHHHHH
Q 022227           77 ----EACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        77 ----~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~----~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                          +.+...|++|+.||......   .+.   ...+..|+.....+.+.+.    +..  ..++|++|+....      
T Consensus        97 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~------  168 (277)
T 4fc7_A           97 DQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDH--GGVIVNITATLGN------  168 (277)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH--CEEEEEECCSHHH------
T ss_pred             HHHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhC------
Confidence                22347899999999653221   122   3456778776666666553    332  3467887765431      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                       .  +.|....++.++.-...+.+.+|.+++
T Consensus       169 -~--~~~~~~~Y~asKaa~~~l~~~la~e~~  196 (277)
T 4fc7_A          169 -R--GQALQVHAGSAKAAVDAMTRHLAVEWG  196 (277)
T ss_dssp             -H--TCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             -C--CCCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence             1  122222345555555666777777764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.83  E-value=0.0001  Score=65.63  Aligned_cols=94  Identities=22%  Similarity=0.305  Sum_probs=60.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      ++||+|+|++|.+|+.++..|...|+       +|+++|+++  ++++.    +....      +..+ +..++++++|+
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~-------~V~~~~r~~--~~~~~----~~~~g------~~~~-~~~~~~~~aDv   70 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAH-------HLAAIEIAP--EGRDR----LQGMG------IPLT-DGDGWIDEADV   70 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSS-------EEEEECCSH--HHHHH----HHHTT------CCCC-CSSGGGGTCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHH----HHhcC------CCcC-CHHHHhcCCCE
Confidence            46999999449999999999998764       789999863  33332    11111      1112 45677899999


Q ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                      ||++...                ..++++++.+....+++..++..|+..
T Consensus        71 Vi~av~~----------------~~~~~v~~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           71 VVLALPD----------------NIIEKVAEDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             EEECSCH----------------HHHHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred             EEEcCCc----------------hHHHHHHHHHHHhCCCCCEEEECCCCc
Confidence            9998411                113556666766555565555555543

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.79  E-value=8.1e-05  Score=69.49  Aligned_cols=110  Identities=20%  Similarity=0.302  Sum_probs=70.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhccc-CCCCCCeEEEEEecCCch--hhhhhhhhhhhhhc------cCCcccEEEeCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVM-LGTDQPVILHMLDIPPAA--EALNGVKMELVDAA------FPLLKGVVATTD   74 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~-~~~~~~~~l~L~D~~~~~--~~l~g~~~dl~~~~------~~~~~~v~~~~~   74 (300)
                      +|.||+|+| +|.-|++++..|...+. .......+|.|+..+++.  +++. ..+.-.+..      ..+..++..++|
T Consensus        33 ~p~KI~ViG-aGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~-e~in~~~~N~~YLpgv~Lp~~i~~t~d  110 (391)
T 4fgw_A           33 KPFKVTVIG-SGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLT-EIINTRHQNVKYLPGITLPDNLVANPD  110 (391)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHH-HHHTTTCCBTTTBTTCCCCSSEEEESC
T ss_pred             CCCeEEEEC-cCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHH-HHHHhcCcCcccCCCCcCCCCcEEeCC
Confidence            567999999 79999999999987542 000001257888765321  1111 111111221      123468899999


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEec
Q 022227           75 AVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA  131 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~s  131 (300)
                      +.+++++||+||++.  |.              ..++++++.++.+-+++..+|.++
T Consensus       111 l~~al~~ad~ii~av--Ps--------------~~~r~~l~~l~~~~~~~~~iv~~~  151 (391)
T 4fgw_A          111 LIDSVKDVDIIVFNI--PH--------------QFLPRICSQLKGHVDSHVRAISCL  151 (391)
T ss_dssp             HHHHHTTCSEEEECS--CG--------------GGHHHHHHHHTTTSCTTCEEEECC
T ss_pred             HHHHHhcCCEEEEEC--Ch--------------hhhHHHHHHhccccCCCceeEEec
Confidence            999999999999863  21              445677888887766666666654

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.79  E-value=7.3e-05  Score=67.89  Aligned_cols=103  Identities=17%  Similarity=0.153  Sum_probs=64.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      ++.|||+||| +|.+|..++..|...|+..   ..+|.++|+++..++++.    +...      .+..+++..++++++
T Consensus        20 ~~~mkI~iIG-~G~mG~ala~~L~~~G~~~---~~~V~v~~r~~~~~~~~~----l~~~------G~~~~~~~~e~~~~a   85 (322)
T 2izz_A           20 FQSMSVGFIG-AGQLAFALAKGFTAAGVLA---AHKIMASSPDMDLATVSA----LRKM------GVKLTPHNKETVQHS   85 (322)
T ss_dssp             --CCCEEEES-CSHHHHHHHHHHHHTTSSC---GGGEEEECSCTTSHHHHH----HHHH------TCEEESCHHHHHHHC
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCCCC---cceEEEECCCccHHHHHH----HHHc------CCEEeCChHHHhccC
Confidence            3457999999 7999999999999877321   016889998642113322    1111      233455777888999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      |+||++.- +               ..+.++++.+....+++..+|.++|...
T Consensus        86 DvVilav~-~---------------~~~~~vl~~l~~~l~~~~ivvs~s~gi~  122 (322)
T 2izz_A           86 DVLFLAVK-P---------------HIIPFILDEIGADIEDRHIVVSCAAGVT  122 (322)
T ss_dssp             SEEEECSC-G---------------GGHHHHHHHHGGGCCTTCEEEECCTTCC
T ss_pred             CEEEEEeC-H---------------HHHHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence            99999852 1               1223445556555444666777777654

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.78  E-value=5.5e-05  Score=65.96  Aligned_cols=100  Identities=17%  Similarity=0.191  Sum_probs=60.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhh--hhhh--------hhhhhhhccCCcccEEEeC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA--LNGV--------KMELVDAAFPLLKGVVATT   73 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~--l~g~--------~~dl~~~~~~~~~~v~~~~   73 (300)
                      ..+||+|+| +|.+|.+++..|+..|.       +|.++|+++  ++  .+..        ..++...   . .... .+
T Consensus        18 ~~~kIgiIG-~G~mG~alA~~L~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~-~~   82 (245)
T 3dtt_A           18 QGMKIAVLG-TGTVGRTMAGALADLGH-------EVTIGTRDP--KATLARAEPDAMGAPPFSQWLPE---H-PHVH-LA   82 (245)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHTCC-------CCHHHHGGG---S-TTCE-EE
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEeCCh--hhhhhhhhhhhhcchhhhHHHhh---c-Ccee-cc
Confidence            458999999 89999999999998774       799999864  32  1111        1111111   0 1122 33


Q ss_pred             ChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHH-HHHHhhhcCCCeEEEEecCchh
Q 022227           74 DAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQ-ASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        74 ~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i-~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      +..+++++||+||++.-.     ..    .   .+.+.++ .+.+    + +..+|.++||.+
T Consensus        83 ~~~e~~~~aDvVilavp~-----~~----~---~~~~~~i~~~~l----~-g~ivi~~s~~~~  128 (245)
T 3dtt_A           83 AFADVAAGAELVVNATEG-----AS----S---IAALTAAGAENL----A-GKILVDIANPLD  128 (245)
T ss_dssp             EHHHHHHHCSEEEECSCG-----GG----H---HHHHHHHCHHHH----T-TSEEEECCCCEE
T ss_pred             CHHHHHhcCCEEEEccCc-----HH----H---HHHHHHhhhhhc----C-CCEEEECCCCCC
Confidence            567889999999997421     11    1   1222333 2222    3 557889999874

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.78  E-value=9.7e-05  Score=68.27  Aligned_cols=94  Identities=16%  Similarity=0.254  Sum_probs=61.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC-
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV-   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a-   82 (300)
                      +.+||+||| .|.+|..++..|+..|.       +|.++|+++  ++++.    +...      .+...++..++++++ 
T Consensus        21 ~~mkIgiIG-lG~mG~~~A~~L~~~G~-------~V~v~dr~~--~~~~~----l~~~------g~~~~~s~~e~~~~a~   80 (358)
T 4e21_A           21 QSMQIGMIG-LGRMGADMVRRLRKGGH-------ECVVYDLNV--NAVQA----LERE------GIAGARSIEEFCAKLV   80 (358)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHH----HHTT------TCBCCSSHHHHHHHSC
T ss_pred             cCCEEEEEC-chHHHHHHHHHHHhCCC-------EEEEEeCCH--HHHHH----HHHC------CCEEeCCHHHHHhcCC
Confidence            457999999 89999999999998874       799999863  33332    2211      122345677778888 


Q ss_pred             --cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCc
Q 022227           83 --NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        83 --DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                        |+||++....                .+.++++.+....+++..+|..||.
T Consensus        81 ~~DvVi~~vp~~----------------~v~~vl~~l~~~l~~g~iiId~st~  117 (358)
T 4e21_A           81 KPRVVWLMVPAA----------------VVDSMLQRMTPLLAANDIVIDGGNS  117 (358)
T ss_dssp             SSCEEEECSCGG----------------GHHHHHHHHGGGCCTTCEEEECSSC
T ss_pred             CCCEEEEeCCHH----------------HHHHHHHHHHhhCCCCCEEEeCCCC
Confidence              9999974211                1233445555555456666666654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.77  E-value=8.4e-05  Score=67.91  Aligned_cols=77  Identities=17%  Similarity=0.133  Sum_probs=48.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhh----hhhhccCCcccE-EEeCChhh
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME----LVDAAFPLLKGV-VATTDAVE   77 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~d----l~~~~~~~~~~v-~~~~~~~~   77 (300)
                      |++|||+|+| +|.+|..++..|...|.       ++.++|+++  ++++.....    +.........++ ..+++..+
T Consensus         2 m~~mki~iiG-~G~~G~~~a~~L~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (359)
T 1bg6_A            2 IESKTYAVLG-LGNGGHAFAAYLALKGQ-------SVLAWDIDA--QRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL   71 (359)
T ss_dssp             --CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH
T ss_pred             CCcCeEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEeCCH--HHHHHHHhcCCeEEeccccccccccceecCCHHH
Confidence            4458999999 79999999999988764       799999863  333322111    000000000112 24567777


Q ss_pred             hcCCCcEEEEeC
Q 022227           78 ACTGVNIAVMVG   89 (300)
Q Consensus        78 a~~~aDvVi~~a   89 (300)
                      +++++|+||++.
T Consensus        72 ~~~~~D~vi~~v   83 (359)
T 1bg6_A           72 AVKDADVILIVV   83 (359)
T ss_dssp             HHTTCSEEEECS
T ss_pred             HHhcCCEEEEeC
Confidence            789999999985

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.77  E-value=6e-05  Score=66.32  Aligned_cols=150  Identities=11%  Similarity=0.103  Sum_probs=82.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC---cccEEEeCChhh----
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAVE----   77 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~---~~~v~~~~~~~~----   77 (300)
                      .+++.||||+|.+|.+++..|++.|.       .+++.|... .+.++....++.......   ..++.-..+..+    
T Consensus        25 ~k~vlITGas~gIG~~~a~~l~~~G~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~   96 (269)
T 3gk3_A           25 KRVAFVTGGMGGLGAAISRRLHDAGM-------AVAVSHSER-NDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEK   96 (269)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTC-------EEEEEECSC-HHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCc-hHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence            35789999999999999999998875       788888543 233332222222111000   001000001111    


Q ss_pred             ---hcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           78 ---ACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        78 ---a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                         .+...|++|+.||.....   ..+.   ...+..|+.....+.+.+    .+..  ..++|++|+....       .
T Consensus        97 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~-------~  167 (269)
T 3gk3_A           97 VLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERR--FGRIVNIGSVNGS-------R  167 (269)
T ss_dssp             HHHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHH-------H
T ss_pred             HHHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEeCChhhc-------c
Confidence               233789999999975422   1222   334666766655555444    3332  3578888764321       1


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                        +.|....|+.++.-...+.+.+++++.
T Consensus       168 --~~~~~~~Y~asKaa~~~~~~~la~e~~  194 (269)
T 3gk3_A          168 --GAFGQANYASAKAGIHGFTKTLALETA  194 (269)
T ss_dssp             --CCTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             --CCCCcchHHHHHHHHHHHHHHHHHHhh
Confidence              223223456666656667777777764

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.76  E-value=0.00031  Score=62.43  Aligned_cols=98  Identities=12%  Similarity=0.049  Sum_probs=60.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +++||+||| +|.+|..++..|...+. +    .++.++|.++  ++++.    +....  .  ....+++..++++++|
T Consensus         5 ~~~~I~iIG-~G~mG~~~a~~l~~~g~-~----~~V~~~d~~~--~~~~~----~~~~g--~--~~~~~~~~~~~~~~aD   68 (290)
T 3b1f_A            5 EEKTIYIAG-LGLIGASLALGIKRDHP-H----YKIVGYNRSD--RSRDI----ALERG--I--VDEATADFKVFAALAD   68 (290)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHHCT-T----SEEEEECSSH--HHHHH----HHHTT--S--CSEEESCTTTTGGGCS
T ss_pred             ccceEEEEe-eCHHHHHHHHHHHhCCC-C----cEEEEEcCCH--HHHHH----HHHcC--C--cccccCCHHHhhcCCC
Confidence            457999999 79999999999987642 1    2789999863  33321    11111  0  0023446667789999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhh-cCCCeEEEEecCc
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH-AAPNCKVLVVANP  133 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~~~~~~viv~sNP  133 (300)
                      +||++.-.                ....++++.+..+ .+++..++.++|.
T Consensus        69 vVilavp~----------------~~~~~v~~~l~~~~l~~~~ivi~~~~~  103 (290)
T 3b1f_A           69 VIILAVPI----------------KKTIDFIKILADLDLKEDVIITDAGST  103 (290)
T ss_dssp             EEEECSCH----------------HHHHHHHHHHHTSCCCTTCEEECCCSC
T ss_pred             EEEEcCCH----------------HHHHHHHHHHHhcCCCCCCEEEECCCC
Confidence            99998421                1124555666655 4446656655654

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.76  E-value=0.00021  Score=63.74  Aligned_cols=152  Identities=16%  Similarity=0.169  Sum_probs=87.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-----CCcccEEEeCChhh--
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-----PLLKGVVATTDAVE--   77 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-----~~~~~v~~~~~~~~--   77 (300)
                      .+++.||||+|.||..++..|++.|.-    ...|++.|++.  ++++....++.....     ....+++-..+..+  
T Consensus        33 ~k~~lVTGas~GIG~aia~~l~~~G~~----~~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~  106 (287)
T 3rku_A           33 KKTVLITGASAGIGKATALEYLEASNG----DMKLILAARRL--EKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFI  106 (287)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHHHTT----CSEEEEEESCH--HHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHH
T ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCC----CceEEEEECCH--HHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHH
Confidence            468999999999999999999887631    11688888863  445443333332100     00011111111222  


Q ss_pred             -----hcCCCcEEEEeCCCCCCC----CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHH
Q 022227           78 -----ACTGVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        78 -----a~~~aDvVi~~ag~~~~~----g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                           .+...|++|+.||.....    ..+.   ...+..|+.....+.+.+    ++..  ..++|++|+....     
T Consensus       107 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~IV~isS~~~~-----  179 (287)
T 3rku_A          107 ENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKN--SGDIVNLGSIAGR-----  179 (287)
T ss_dssp             HTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGT-----
T ss_pred             HHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEECChhhc-----
Confidence                 233689999999975311    1222   345667766655555554    4443  3468888764431     


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                          .+.|....|+.++.-...+.+.++.++.
T Consensus       180 ----~~~~~~~~Y~asKaa~~~l~~~la~e~~  207 (287)
T 3rku_A          180 ----DAYPTGSIYCASKFAVGAFTDSLRKELI  207 (287)
T ss_dssp             ----SCCTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ----CCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence                1233333456666666677888888875

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=97.76  E-value=4.7e-05  Score=66.55  Aligned_cols=153  Identities=12%  Similarity=0.084  Sum_probs=88.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHh---cccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc----c-CCcccEEEeCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIAR---GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA----F-PLLKGVVATTD   74 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~---~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~----~-~~~~~v~~~~~   74 (300)
                      ++.+++.||||+|.+|.+++..|++   .|.       +|++.|+++  ++++....++....    . ....+++-..+
T Consensus         4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~   74 (259)
T 1oaa_A            4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS-------VMLVSARSE--SMLRQLKEELGAQQPDLKVVLAAADLGTEAG   74 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-------EEEEEESCH--HHHHHHHHHHHHHCTTSEEEEEECCTTSHHH
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHhhcCCC-------eEEEEeCCH--HHHHHHHHHHHhhCCCCeEEEEecCCCCHHH
Confidence            3456799999999999999999997   564       789999863  44443333332210    0 00000000001


Q ss_pred             hhhhc---------CCCc--EEEEeCCCCCCC-----C-CcH---HHHHHhhHHHHHHHHHHHhhhcC----CCeEEEEe
Q 022227           75 AVEAC---------TGVN--IAVMVGGFPRKE-----G-MER---KDVMSKNVSIYKAQASALEQHAA----PNCKVLVV  130 (300)
Q Consensus        75 ~~~a~---------~~aD--vVi~~ag~~~~~-----g-~~r---~dl~~~N~~i~~~i~~~i~~~~~----~~~~viv~  130 (300)
                      ..+.+         ...|  ++|+.||.....     . .+.   ...+..|+.....+.+.+.+.-.    +..++|++
T Consensus        75 v~~~~~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~i  154 (259)
T 1oaa_A           75 VQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNI  154 (259)
T ss_dssp             HHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEE
T ss_pred             HHHHHHHHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEE
Confidence            11111         1347  999999974321     1 222   34577888887777777655421    12467887


Q ss_pred             cCchhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          131 ANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       131 sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      |+....         .+.|....|+.++.-...+.+.++.++.
T Consensus       155 sS~~~~---------~~~~~~~~Y~asKaa~~~~~~~la~e~~  188 (259)
T 1oaa_A          155 SSLCAL---------QPYKGWGLYCAGKAARDMLYQVLAAEEP  188 (259)
T ss_dssp             CCGGGT---------SCCTTCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             cCchhc---------CCCCCccHHHHHHHHHHHHHHHHHhhCC
Confidence            765431         1233333456666666777888888875

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=97.75  E-value=7.4e-05  Score=65.37  Aligned_cols=94  Identities=15%  Similarity=0.112  Sum_probs=61.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +.|||+|+| +|.+|+.++..|...|.+.   ..++.++|+++  ++ .               .+...++..++++++|
T Consensus         3 ~~m~i~iiG-~G~mG~~~a~~l~~~g~~~---~~~v~~~~~~~--~~-~---------------g~~~~~~~~~~~~~~D   60 (262)
T 2rcy_A            3 ENIKLGFMG-LGQMGSALAHGIANANIIK---KENLFYYGPSK--KN-T---------------TLNYMSSNEELARHCD   60 (262)
T ss_dssp             SSSCEEEEC-CSHHHHHHHHHHHHHTSSC---GGGEEEECSSC--CS-S---------------SSEECSCHHHHHHHCS
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCCC---CCeEEEEeCCc--cc-C---------------ceEEeCCHHHHHhcCC
Confidence            357999999 7999999999998876311   01588999864  22 0               1233456777889999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT  136 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~  136 (300)
                      +||++.-    + ..           ++++++.+..+.+ +..++..+|.+..
T Consensus        61 ~vi~~v~----~-~~-----------~~~v~~~l~~~l~-~~~vv~~~~gi~~   96 (262)
T 2rcy_A           61 IIVCAVK----P-DI-----------AGSVLNNIKPYLS-SKLLISICGGLNI   96 (262)
T ss_dssp             EEEECSC----T-TT-----------HHHHHHHSGGGCT-TCEEEECCSSCCH
T ss_pred             EEEEEeC----H-HH-----------HHHHHHHHHHhcC-CCEEEEECCCCCH
Confidence            9999852    1 11           2344455555544 4457777887653

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.74  E-value=0.00014  Score=64.96  Aligned_cols=105  Identities=15%  Similarity=0.220  Sum_probs=61.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhh-hhhhccC--CcccEEEeCC--hhhhc
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME-LVDAAFP--LLKGVVATTD--AVEAC   79 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~d-l~~~~~~--~~~~v~~~~~--~~~a~   79 (300)
                      +|||+|+| +|.+|+.++..|...|.       ++.++|+++  ++++..... +......  ...++..+++  ..+++
T Consensus         3 ~m~i~iiG-~G~~G~~~a~~l~~~g~-------~V~~~~r~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (316)
T 2ew2_A            3 AMKIAIAG-AGAMGSRLGIMLHQGGN-------DVTLIDQWP--AHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQN   72 (316)
T ss_dssp             -CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTS
T ss_pred             CCeEEEEC-cCHHHHHHHHHHHhCCC-------cEEEEECCH--HHHHHHHhCCEEEEeCCCeeEecceeecchhhcccC
Confidence            47999999 79999999999998764       799999863  333322110 0000000  0011222221  12234


Q ss_pred             CCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           80 TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      +++|+||++...                ..+.++++.+..+.+++..++.++|...
T Consensus        73 ~~~d~vi~~v~~----------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~  112 (316)
T 2ew2_A           73 EQVDLIIALTKA----------------QQLDAMFKAIQPMITEKTYVLCLLNGLG  112 (316)
T ss_dssp             CCCSEEEECSCH----------------HHHHHHHHHHGGGCCTTCEEEECCSSSC
T ss_pred             CCCCEEEEEecc----------------ccHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence            499999998421                1135566667766555666777788765

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.74  E-value=0.00011  Score=65.52  Aligned_cols=64  Identities=17%  Similarity=0.280  Sum_probs=48.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||+|+| +|.+|..++..|...|.       +|.++|+++  ++++.    +.+.      .+...++..+++++||+|
T Consensus         2 ~~I~iiG-~G~mG~~~a~~l~~~G~-------~V~~~dr~~--~~~~~----~~~~------g~~~~~~~~~~~~~advv   61 (287)
T 3pdu_A            2 TTYGFLG-LGIMGGPMAANLVRAGF-------DVTVWNRNP--AKCAP----LVAL------GARQASSPAEVCAACDIT   61 (287)
T ss_dssp             CCEEEEC-CSTTHHHHHHHHHHHTC-------CEEEECSSG--GGGHH----HHHH------TCEECSCHHHHHHHCSEE
T ss_pred             CeEEEEc-cCHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHHH----HHHC------CCeecCCHHHHHHcCCEE
Confidence            5899999 89999999999998874       689999864  33332    2111      233456788889999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++.
T Consensus        62 i~~v   65 (287)
T 3pdu_A           62 IAML   65 (287)
T ss_dssp             EECC
T ss_pred             EEEc
Confidence            9984

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=97.73  E-value=7.6e-05  Score=68.80  Aligned_cols=73  Identities=21%  Similarity=0.297  Sum_probs=49.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc----cCCcccEEEeCChhhhcCCC
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA----FPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~----~~~~~~v~~~~~~~~a~~~a   82 (300)
                      ||+|+| +|.+|..++..|...|.       +|.++|+++  ++++.....-....    ......+..+++..++++++
T Consensus        17 kI~iIG-~G~mG~~la~~L~~~G~-------~V~~~~r~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a   86 (366)
T 1evy_A           17 KAVVFG-SGAFGTALAMVLSKKCR-------EVCVWHMNE--EEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGA   86 (366)
T ss_dssp             EEEEEC-CSHHHHHHHHHHTTTEE-------EEEEECSCH--HHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTC
T ss_pred             eEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHcCcccccccccccccceeeeCCHHHHHcCC
Confidence            999999 79999999999987764       799999863  33332211100000    01123466677887889999


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |+||++.
T Consensus        87 DvVilav   93 (366)
T 1evy_A           87 EIILFVI   93 (366)
T ss_dssp             SSEEECC
T ss_pred             CEEEECC
Confidence            9999984

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.73  E-value=0.0003  Score=63.52  Aligned_cols=70  Identities=11%  Similarity=0.109  Sum_probs=47.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      ++++||+||| +|.+|..++..|...|. .     +|.++|+++++++.+    .+...      .+...++..+++++|
T Consensus        22 ~~~~~I~iIG-~G~mG~~~A~~L~~~G~-~-----~V~~~dr~~~~~~~~----~~~~~------g~~~~~~~~e~~~~a   84 (312)
T 3qsg_A           22 SNAMKLGFIG-FGEAASAIASGLRQAGA-I-----DMAAYDAASAESWRP----RAEEL------GVSCKASVAEVAGEC   84 (312)
T ss_dssp             ---CEEEEEC-CSHHHHHHHHHHHHHSC-C-----EEEEECSSCHHHHHH----HHHHT------TCEECSCHHHHHHHC
T ss_pred             CCCCEEEEEC-ccHHHHHHHHHHHHCCC-C-----eEEEEcCCCCHHHHH----HHHHC------CCEEeCCHHHHHhcC
Confidence            3468999999 79999999999998763 1     689999852112222    11111      233456778889999


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |+||++.
T Consensus        85 DvVi~~v   91 (312)
T 3qsg_A           85 DVIFSLV   91 (312)
T ss_dssp             SEEEECS
T ss_pred             CEEEEec
Confidence            9999975

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.73  E-value=0.00013  Score=64.93  Aligned_cols=156  Identities=12%  Similarity=0.105  Sum_probs=93.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeC-------Chhh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT-------DAVE   77 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~-------~~~~   77 (300)
                      .+.+.||||++-||..++..|++.|.       .|++.|++  +++++....++.........+++-..       ...+
T Consensus        29 gKvalVTGas~GIG~aiA~~la~~Ga-------~V~i~~r~--~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~   99 (273)
T 4fgs_A           29 AKIAVITGATSGIGLAAAKRFVAEGA-------RVFITGRR--KDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKA   99 (273)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESC--HHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHH
Confidence            45688999999999999999999885       79999986  35665444444221111101111000       1223


Q ss_pred             hcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCC
Q 022227           78 ACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAK  151 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~  151 (300)
                      .+-..|++|..||.....   ..+.   .+.+..|+...-.+++...++=.+...+|++++-...         .+.|..
T Consensus       100 ~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~---------~~~~~~  170 (273)
T 4fgs_A          100 EAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGS---------TGTPAF  170 (273)
T ss_dssp             HHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGG---------SCCTTC
T ss_pred             HcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhc---------cCCCCc
Confidence            345679999999875422   2222   3457778777766666665543334567777654331         233322


Q ss_pred             cEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          152 NITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       152 ~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      -.|+.++--...+-+.+|.+++  +..|+
T Consensus       171 ~~Y~asKaav~~ltr~lA~Ela--~~gIr  197 (273)
T 4fgs_A          171 SVYAASKAALRSFARNWILDLK--DRGIR  197 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT--TSCEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHhc--ccCeE
Confidence            2455555555677888888876  44554

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.70  E-value=0.00024  Score=63.36  Aligned_cols=68  Identities=13%  Similarity=0.242  Sum_probs=47.5

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      |+ +++||+|+| +|.+|..++..|...|.       ++.++|+++  ++++.    +.+.      .+...++..++++
T Consensus         1 M~-~~~~i~iiG-~G~~G~~~a~~l~~~g~-------~V~~~~~~~--~~~~~----~~~~------g~~~~~~~~~~~~   59 (301)
T 3cky_A            1 ME-KSIKIGFIG-LGAMGKPMAINLLKEGV-------TVYAFDLME--ANVAA----VVAQ------GAQACENNQKVAA   59 (301)
T ss_dssp             ----CCEEEEEC-CCTTHHHHHHHHHHTTC-------EEEEECSSH--HHHHH----HHTT------TCEECSSHHHHHH
T ss_pred             CC-CCCEEEEEC-ccHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHH----HHHC------CCeecCCHHHHHh
Confidence            54 457999999 79999999999987764       789999863  33332    2111      1234457778889


Q ss_pred             CCcEEEEeC
Q 022227           81 GVNIAVMVG   89 (300)
Q Consensus        81 ~aDvVi~~a   89 (300)
                      ++|+||++.
T Consensus        60 ~~D~vi~~v   68 (301)
T 3cky_A           60 ASDIIFTSL   68 (301)
T ss_dssp             HCSEEEECC
T ss_pred             CCCEEEEEC
Confidence            999999984

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.70  E-value=0.00027  Score=67.85  Aligned_cols=102  Identities=15%  Similarity=0.032  Sum_probs=64.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC-
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG-   81 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~-   81 (300)
                      |+.+||+||| +|.+|+.++..|+..|.       +|.++|+++  ++++.......      ...+..+++..+++++ 
T Consensus        13 ~~~~~IgvIG-lG~MG~~lA~~La~~G~-------~V~v~~r~~--~~~~~l~~~~~------~~gi~~~~s~~e~v~~l   76 (480)
T 2zyd_A           13 MSKQQIGVVG-MAVMGRNLALNIESRGY-------TVSIFNRSR--EKTEEVIAENP------GKKLVPYYTVKEFVESL   76 (480)
T ss_dssp             --CBSEEEEC-CSHHHHHHHHHHHTTTC-------CEEEECSSH--HHHHHHHHHST------TSCEEECSSHHHHHHTB
T ss_pred             cCCCeEEEEc-cHHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHhhCC------CCCeEEeCCHHHHHhCC
Confidence            3456899999 79999999999998774       689999863  44332211110      0235566677777776 


Q ss_pred             --CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           82 --VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        82 --aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                        +|+||++.-.    +.           .++++++.+....+++..+|..+|...
T Consensus        77 ~~aDvVil~Vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~s~g~~  117 (480)
T 2zyd_A           77 ETPRRILLMVKA----GA-----------GTDAAIDSLKPYLDKGDIIIDGGNTFF  117 (480)
T ss_dssp             CSSCEEEECSCS----SS-----------HHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             CCCCEEEEECCC----HH-----------HHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence              9999998421    11           123444555555544566777887653

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=97.70  E-value=0.00017  Score=62.96  Aligned_cols=148  Identities=13%  Similarity=0.099  Sum_probs=81.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChh-------hh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAV-------EA   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~-------~a   78 (300)
                      +++.||||+|.||.+++..|++.|. +    ..|++.+.++  ++++....++.........++.-..+..       +.
T Consensus         3 k~~lVTGas~GIG~aia~~l~~~g~-~----~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   75 (254)
T 3kzv_A            3 KVILVTGVSRGIGKSIVDVLFSLDK-D----TVVYGVARSE--APLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKG   75 (254)
T ss_dssp             CEEEECSTTSHHHHHHHHHHHHHCS-S----CEEEEEESCH--HHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHhcCC-C----eEEEEecCCH--HHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999999988642 1    1677787753  4443322222111000000100000111       22


Q ss_pred             cCCCcEEEEeCCCCCC--C--CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHHHHHHHHCCC
Q 022227           79 CTGVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEFAPS  147 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~--~--g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~~~~~~~~~~  147 (300)
                      +...|++|+.||....  +  ..+.   ...+..|+.....+.+.+    ++..   .++|++|+....         .+
T Consensus        76 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~---g~iv~isS~~~~---------~~  143 (254)
T 3kzv_A           76 HGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN---GNVVFVSSDACN---------MY  143 (254)
T ss_dssp             HSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCSCCC---------CS
T ss_pred             cCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC---CeEEEEcCchhc---------cC
Confidence            3478999999997432  1  2222   235666766555555544    5442   367777764421         12


Q ss_pred             CCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          148 IPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       148 ~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                      .|....|+.++.-...+.+.+|.++
T Consensus       144 ~~~~~~Y~asK~a~~~~~~~la~e~  168 (254)
T 3kzv_A          144 FSSWGAYGSSKAALNHFAMTLANEE  168 (254)
T ss_dssp             SCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCcchHHHHHHHHHHHHHHHHhhc
Confidence            2322345666666667777888876

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=97.69  E-value=4.3e-05  Score=69.25  Aligned_cols=154  Identities=16%  Similarity=0.073  Sum_probs=83.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC--------chhhhhhhhhhhhhhccC---CcccEEEe
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--------AAEALNGVKMELVDAAFP---LLKGVVAT   72 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~--------~~~~l~g~~~dl~~~~~~---~~~~v~~~   72 (300)
                      +.+++.||||+|.||.+++..|++.|.       +|++.|++.        ..+.++....++......   ...++.-.
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~-------~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~   98 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGA-------RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADW   98 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCH
Confidence            346799999999999999999999875       789998751        012333333333221100   00011000


Q ss_pred             CChhhh-------cCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHHhhh----cC----CCeEEEEec
Q 022227           73 TDAVEA-------CTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQH----AA----PNCKVLVVA  131 (300)
Q Consensus        73 ~~~~~a-------~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~~~----~~----~~~~viv~s  131 (300)
                      .+..+.       +...|++|+.||......   .+.   ...+..|+.....+.+.+..+    ..    +..++|++|
T Consensus        99 ~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~is  178 (322)
T 3qlj_A           99 DQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTS  178 (322)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEEC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEc
Confidence            011122       237899999999764221   222   345677877655555544322    11    124677777


Q ss_pred             CchhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          132 NPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       132 NP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      +....       .  +.+....|+.++.-...+.+.+|.+++
T Consensus       179 S~~~~-------~--~~~~~~~Y~asKaal~~l~~~la~e~~  211 (322)
T 3qlj_A          179 SGAGL-------Q--GSVGQGNYSAAKAGIATLTLVGAAEMG  211 (322)
T ss_dssp             CHHHH-------H--CBTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CHHHc-------c--CCCCCccHHHHHHHHHHHHHHHHHHhc
Confidence            64321       1  122222355566556667777777764

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.69  E-value=0.00021  Score=60.82  Aligned_cols=77  Identities=18%  Similarity=0.152  Sum_probs=52.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..+||+|+| +|.+|+.++..|...|.       ++.++|+++  +                            ++++||
T Consensus        18 ~~~~I~iiG-~G~mG~~la~~l~~~g~-------~V~~~~~~~--~----------------------------~~~~aD   59 (209)
T 2raf_A           18 QGMEITIFG-KGNMGQAIGHNFEIAGH-------EVTYYGSKD--Q----------------------------ATTLGE   59 (209)
T ss_dssp             --CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECTTC--C----------------------------CSSCCS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEcCCH--H----------------------------HhccCC
Confidence            357999999 79999999999998764       789998753  1                            467899


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      +||++.. +               ..++++++.+..+.+ +..++.++|+.+
T Consensus        60 ~vi~av~-~---------------~~~~~v~~~l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           60 IVIMAVP-Y---------------PALAALAKQYATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             EEEECSC-H---------------HHHHHHHHHTHHHHT-TSEEEECCCCBC
T ss_pred             EEEEcCC-c---------------HHHHHHHHHHHHhcC-CCEEEEECCCCC
Confidence            9999842 1               112333334433333 456788889664

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.67  E-value=0.00022  Score=64.28  Aligned_cols=65  Identities=12%  Similarity=0.174  Sum_probs=47.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .+||+|+| +|.+|+.++..|...|.       ++.++|+++  ++++.    +...      .+...++..++++++|+
T Consensus        30 ~~~I~iIG-~G~mG~~~a~~l~~~g~-------~V~~~~~~~--~~~~~----~~~~------g~~~~~~~~~~~~~~Dv   89 (316)
T 2uyy_A           30 DKKIGFLG-LGLMGSGIVSNLLKMGH-------TVTVWNRTA--EKCDL----FIQE------GARLGRTPAEVVSTCDI   89 (316)
T ss_dssp             SSCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSG--GGGHH----HHHT------TCEECSCHHHHHHHCSE
T ss_pred             CCeEEEEc-ccHHHHHHHHHHHhCCC-------EEEEEeCCH--HHHHH----HHHc------CCEEcCCHHHHHhcCCE
Confidence            47999999 79999999999988764       689999863  33332    1111      12344567788899999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      ||++.
T Consensus        90 Vi~av   94 (316)
T 2uyy_A           90 TFACV   94 (316)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            99985

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.67  E-value=0.00033  Score=62.23  Aligned_cols=79  Identities=14%  Similarity=0.101  Sum_probs=49.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEe-CCh--------
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT-TDA--------   75 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~-~~~--------   75 (300)
                      .++|.||||+|.||.+++..|+..|.       .|++.+++.  ++++....++.........-+..- ++.        
T Consensus        12 ~k~vlITGas~GIG~~~a~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~   82 (311)
T 3o26_A           12 RRCAVVTGGNKGIGFEICKQLSSNGI-------MVVLTCRDV--TKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLA   82 (311)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHH
T ss_pred             CcEEEEecCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHH
Confidence            35799999999999999999998875       799999863  444433334432210000000000 011        


Q ss_pred             ---hhhcCCCcEEEEeCCCC
Q 022227           76 ---VEACTGVNIAVMVGGFP   92 (300)
Q Consensus        76 ---~~a~~~aDvVi~~ag~~   92 (300)
                         .+.+...|++|+.||..
T Consensus        83 ~~~~~~~g~iD~lv~nAg~~  102 (311)
T 3o26_A           83 DFIKTHFGKLDILVNNAGVA  102 (311)
T ss_dssp             HHHHHHHSSCCEEEECCCCC
T ss_pred             HHHHHhCCCCCEEEECCccc
Confidence               11234789999999975

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.66  E-value=8.7e-05  Score=64.65  Aligned_cols=99  Identities=15%  Similarity=0.285  Sum_probs=61.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||+||| +|.+|..++..|...|+..   +.++.++|+++  ++++....++         .+...++..++++++|+|
T Consensus         3 ~~i~iIG-~G~mG~~~a~~l~~~g~~~---~~~V~~~~r~~--~~~~~~~~~~---------g~~~~~~~~e~~~~aDvV   67 (247)
T 3gt0_A            3 KQIGFIG-CGNMGMAMIGGMINKNIVS---SNQIICSDLNT--ANLKNASEKY---------GLTTTTDNNEVAKNADIL   67 (247)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHHHTTSSC---GGGEEEECSCH--HHHHHHHHHH---------CCEECSCHHHHHHHCSEE
T ss_pred             CeEEEEC-ccHHHHHHHHHHHhCCCCC---CCeEEEEeCCH--HHHHHHHHHh---------CCEEeCChHHHHHhCCEE
Confidence            6899999 7999999999999887532   12688999863  4443221111         233456778889999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      |++. .+   .            .+.++.+.+..+.+++..+|-.++.+.
T Consensus        68 ilav-~~---~------------~~~~v~~~l~~~l~~~~~vvs~~~gi~  101 (247)
T 3gt0_A           68 ILSI-KP---D------------LYASIINEIKEIIKNDAIIVTIAAGKS  101 (247)
T ss_dssp             EECS-CT---T------------THHHHC---CCSSCTTCEEEECSCCSC
T ss_pred             EEEe-CH---H------------HHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence            9985 11   1            133455566665555544444455443

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.66  E-value=0.00022  Score=64.60  Aligned_cols=69  Identities=13%  Similarity=0.174  Sum_probs=47.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcc-cCCCCCCeEEEEEecCCc-hhhhhhhhhhhhhhccCCcccEEEeC-ChhhhcCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGV-MLGTDQPVILHMLDIPPA-AEALNGVKMELVDAAFPLLKGVVATT-DAVEACTG   81 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~-~~~~~~~~~l~L~D~~~~-~~~l~g~~~dl~~~~~~~~~~v~~~~-~~~~a~~~   81 (300)
                      ++||+||| +|.+|..++..|+..| .       +|.++|++++ .++.+.....+...      .+  .+ +..+++++
T Consensus        24 ~m~IgvIG-~G~mG~~lA~~L~~~G~~-------~V~~~dr~~~~~~~~~~~~~~~~~~------g~--~~~s~~e~~~~   87 (317)
T 4ezb_A           24 MTTIAFIG-FGEAAQSIAGGLGGRNAA-------RLAAYDLRFNDPAASGALRARAAEL------GV--EPLDDVAGIAC   87 (317)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHTTTCS-------EEEEECGGGGCTTTHHHHHHHHHHT------TC--EEESSGGGGGG
T ss_pred             CCeEEEEC-ccHHHHHHHHHHHHcCCC-------eEEEEeCCCccccchHHHHHHHHHC------CC--CCCCHHHHHhc
Confidence            47999999 7999999999999877 4       7999998631 11222121222211      11  33 56788999


Q ss_pred             CcEEEEeC
Q 022227           82 VNIAVMVG   89 (300)
Q Consensus        82 aDvVi~~a   89 (300)
                      ||+||++.
T Consensus        88 aDvVi~av   95 (317)
T 4ezb_A           88 ADVVLSLV   95 (317)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEEec
Confidence            99999985

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.66  E-value=0.00022  Score=64.57  Aligned_cols=101  Identities=13%  Similarity=0.098  Sum_probs=61.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEec--CCchhhhhhhhhhhhhh--ccCCcccEEEeC--Chhhhc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI--PPAAEALNGVKMELVDA--AFPLLKGVVATT--DAVEAC   79 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~--~~~~~~l~g~~~dl~~~--~~~~~~~v~~~~--~~~~a~   79 (300)
                      |||+|+| +|.+|+.++..|...|.       ++.++|+  ++  ++++.....-...  .... .++..++  +..+++
T Consensus         1 m~I~iiG-~G~mG~~~a~~L~~~g~-------~V~~~~r~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~   69 (335)
T 1txg_A            1 MIVSILG-AGAMGSALSVPLVDNGN-------EVRIWGTEFDT--EILKSISAGREHPRLGVKL-NGVEIFWPEQLEKCL   69 (335)
T ss_dssp             CEEEEES-CCHHHHHHHHHHHHHCC-------EEEEECCGGGH--HHHHHHHTTCCBTTTTBCC-CSEEEECGGGHHHHH
T ss_pred             CEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEEccCCH--HHHHHHHHhCcCcccCccc-cceEEecHHhHHHHH
Confidence            4899999 79999999999988764       7999998  42  3333211100000  0001 2345555  666778


Q ss_pred             CCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           80 TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                      +++|+||++...+                .+.++++.+.. -.++..+|.++|..
T Consensus        70 ~~~D~vi~~v~~~----------------~~~~v~~~i~~-l~~~~~vv~~~ng~  107 (335)
T 1txg_A           70 ENAEVVLLGVSTD----------------GVLPVMSRILP-YLKDQYIVLISKGL  107 (335)
T ss_dssp             TTCSEEEECSCGG----------------GHHHHHHHHTT-TCCSCEEEECCCSE
T ss_pred             hcCCEEEEcCChH----------------HHHHHHHHHhc-CCCCCEEEEEcCcC
Confidence            9999999985221                12234444544 33455677777766

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=97.65  E-value=9e-05  Score=64.81  Aligned_cols=150  Identities=11%  Similarity=0.075  Sum_probs=80.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEeCChhhh-
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAVEA-   78 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~~~~~a-   78 (300)
                      ++.+++.||||+|.+|.+++..|++.|.       +|++.|+++  ++++....++.....   ....++.-..+..++ 
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~   73 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGA-------TVYITGRHL--DTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLF   73 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHH
Confidence            3456899999999999999999999875       788998863  444333333321110   000000000011111 


Q ss_pred             -------cCCCcEEEEeCC--CC------CCC--CCc---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCch
Q 022227           79 -------CTGVNIAVMVGG--FP------RKE--GME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        79 -------~~~aDvVi~~ag--~~------~~~--g~~---r~dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                             +...|++|+.||  ..      ..+  ..+   -...+..|+...    +...+.+.+..  ..++|++|+..
T Consensus        74 ~~~~~~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~  151 (260)
T 2qq5_A           74 EQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAG--QGLIVVISSPG  151 (260)
T ss_dssp             HHHHHHHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGT--CCEEEEECCGG
T ss_pred             HHHHHhcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcC--CcEEEEEcChh
Confidence                   345799999994  32      111  111   223455565444    44455555543  24688887654


Q ss_pred             hhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          135 NTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       135 ~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ..         .. ++...|+.++.-...+.+.+++++.
T Consensus       152 ~~---------~~-~~~~~Y~asK~a~~~~~~~la~e~~  180 (260)
T 2qq5_A          152 SL---------QY-MFNVPYGVGKAACDKLAADCAHELR  180 (260)
T ss_dssp             GT---------SC-CSSHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             hc---------CC-CCCCchHHHHHHHHHHHHHHHHHhc
Confidence            31         11 1112345555555566667777653

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.61  E-value=0.00034  Score=61.89  Aligned_cols=92  Identities=13%  Similarity=0.040  Sum_probs=57.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||+|+| +|.+|..++..|.. |.       ++.++|+++  ++++..    ....      +...+ ..++++++|+|
T Consensus         2 ~~i~iiG-~G~~G~~~a~~l~~-g~-------~V~~~~~~~--~~~~~~----~~~g------~~~~~-~~~~~~~~D~v   59 (289)
T 2cvz_A            2 EKVAFIG-LGAMGYPMAGHLAR-RF-------PTLVWNRTF--EKALRH----QEEF------GSEAV-PLERVAEARVI   59 (289)
T ss_dssp             CCEEEEC-CSTTHHHHHHHHHT-TS-------CEEEECSST--HHHHHH----HHHH------CCEEC-CGGGGGGCSEE
T ss_pred             CeEEEEc-ccHHHHHHHHHHhC-CC-------eEEEEeCCH--HHHHHH----HHCC------CcccC-HHHHHhCCCEE
Confidence            5899999 79999999999987 74       688999864  333321    1111      11223 55678899999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                      |++...+               ..++++.+.+.+..+++..++..+|..
T Consensus        60 i~~v~~~---------------~~~~~v~~~l~~~l~~~~~vv~~s~~~   93 (289)
T 2cvz_A           60 FTCLPTT---------------REVYEVAEALYPYLREGTYWVDATSGE   93 (289)
T ss_dssp             EECCSSH---------------HHHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred             EEeCCCh---------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            9984211               112233455555444466666667653

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.61  E-value=0.00043  Score=62.63  Aligned_cols=106  Identities=15%  Similarity=0.226  Sum_probs=62.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC--CcccEEEeCChhhhcCCCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~--~~~~v~~~~~~~~a~~~aD   83 (300)
                      |||+|+| +|.+|..++..|.+.|.       +|.++|+++ .+.++..-..+......  ....+..+++..++.+++|
T Consensus         3 mkI~IiG-aGaiG~~~a~~L~~~g~-------~V~~~~r~~-~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~D   73 (320)
T 3i83_A            3 LNILVIG-TGAIGSFYGALLAKTGH-------CVSVVSRSD-YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPD   73 (320)
T ss_dssp             CEEEEES-CCHHHHHHHHHHHHTTC-------EEEEECSTT-HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCS
T ss_pred             CEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEeCCh-HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCC
Confidence            6999999 79999999999998763       799999864 22222110001110000  0112334556655555999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT  136 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~  136 (300)
                      +||++.-    +...            .++++.+..+-.++..+|.+.|-.+.
T Consensus        74 lVilavK----~~~~------------~~~l~~l~~~l~~~t~Iv~~~nGi~~  110 (320)
T 3i83_A           74 CTLLCIK----VVEG------------ADRVGLLRDAVAPDTGIVLISNGIDI  110 (320)
T ss_dssp             EEEECCC----CCTT------------CCHHHHHTTSCCTTCEEEEECSSSSC
T ss_pred             EEEEecC----CCCh------------HHHHHHHHhhcCCCCEEEEeCCCCCh
Confidence            9999741    1111            12344455554446677888887753

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.59  E-value=0.00036  Score=62.18  Aligned_cols=64  Identities=19%  Similarity=0.292  Sum_probs=47.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+|+| +|.+|..++..|...|.       ++.++|+++  ++++.    +...      .+...++..++++++|+|
T Consensus         6 m~i~iiG-~G~~G~~~a~~l~~~g~-------~V~~~~~~~--~~~~~----~~~~------g~~~~~~~~~~~~~~D~v   65 (299)
T 1vpd_A            6 MKVGFIG-LGIMGKPMSKNLLKAGY-------SLVVSDRNP--EAIAD----VIAA------GAETASTAKAIAEQCDVI   65 (299)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSCH--HHHHH----HHHT------TCEECSSHHHHHHHCSEE
T ss_pred             ceEEEEC-chHHHHHHHHHHHhCCC-------EEEEEeCCH--HHHHH----HHHC------CCeecCCHHHHHhCCCEE
Confidence            6999999 79999999999987763       789999863  33332    1111      123455777888999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++.
T Consensus        66 i~~v   69 (299)
T 1vpd_A           66 ITML   69 (299)
T ss_dssp             EECC
T ss_pred             EEEC
Confidence            9985

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=97.59  E-value=8.6e-05  Score=67.53  Aligned_cols=150  Identities=16%  Similarity=0.164  Sum_probs=78.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC-chhhhhhhhhhhhh-----hcc-CCcccEEEeCChhhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-AAEALNGVKMELVD-----AAF-PLLKGVVATTDAVEA   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~-~~~~l~g~~~dl~~-----~~~-~~~~~v~~~~~~~~a   78 (300)
                      ++|.||||+|.||.+++..|++.|.       ++++++.+. +.+.+......+..     ... ....+++-..+..++
T Consensus         3 k~vlVTGas~GIG~ala~~L~~~G~-------~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~   75 (327)
T 1jtv_A            3 TVVLITGCSSGIGLHLAVRLASDPS-------QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAA   75 (327)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTCTT-------CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-------ceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHH
Confidence            5799999999999999999998874       355554431 11111111111100     000 000011001112223


Q ss_pred             cC-----CCcEEEEeCCCCCCC---CCc---HHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           79 CT-----GVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        79 ~~-----~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~----i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                      ++     ..|++|+.||.....   ..+   -...+..|+.....+.+.    +++..  ..++|++|+....       
T Consensus        76 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~--~g~IV~isS~~~~-------  146 (327)
T 1jtv_A           76 RERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG--SGRVLVTGSVGGL-------  146 (327)
T ss_dssp             HHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEEGGGT-------
T ss_pred             HHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEECCcccc-------
Confidence            33     489999999875321   112   234567777666666655    44443  3467777754321       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                        .+.|....|+.++.-...+.+.++.++.
T Consensus       147 --~~~~~~~~Y~aSK~a~~~~~~~la~el~  174 (327)
T 1jtv_A          147 --MGLPFNDVYCASKFALEGLCESLAVLLL  174 (327)
T ss_dssp             --SCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             --cCCCCChHHHHHHHHHHHHHHHHHHHhh
Confidence              1223223455666666666677777653

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.58  E-value=0.00019  Score=63.84  Aligned_cols=64  Identities=17%  Similarity=0.223  Sum_probs=45.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      +|||+|+| +|.+|+.++..|...|.       ++.++| ++  ++++..    ...      .+...++..++++++|+
T Consensus         3 ~m~i~iiG-~G~~G~~~a~~l~~~g~-------~V~~~~-~~--~~~~~~----~~~------g~~~~~~~~~~~~~~D~   61 (295)
T 1yb4_A            3 AMKLGFIG-LGIMGSPMAINLARAGH-------QLHVTT-IG--PVADEL----LSL------GAVNVETARQVTEFADI   61 (295)
T ss_dssp             -CEEEECC-CSTTHHHHHHHHHHTTC-------EEEECC-SS--CCCHHH----HTT------TCBCCSSHHHHHHTCSE
T ss_pred             CCEEEEEc-cCHHHHHHHHHHHhCCC-------EEEEEc-CH--HHHHHH----HHc------CCcccCCHHHHHhcCCE
Confidence            47999999 79999999999987764       788998 64  333321    111      11223467778899999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      ||++.
T Consensus        62 vi~~v   66 (295)
T 1yb4_A           62 IFIMV   66 (295)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            99985

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=97.58  E-value=0.00017  Score=63.71  Aligned_cols=100  Identities=12%  Similarity=0.159  Sum_probs=60.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-CcccEEEeCChhhhcCCCcE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-~~~~v~~~~~~~~a~~~aDv   84 (300)
                      |||+|+| +|.+|+.++..|...|.       +|.++|+++  ++++..  ........ ...++..  +..++++++|+
T Consensus         1 m~i~iiG-~G~~G~~~a~~l~~~g~-------~V~~~~r~~--~~~~~l--~~~~~~~~~~~~~~~~--~~~~~~~~~d~   66 (291)
T 1ks9_A            1 MKITVLG-CGALGQLWLTALCKQGH-------EVQGWLRVP--QPYCSV--NLVETDGSIFNESLTA--NDPDFLATSDL   66 (291)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSC--CSEEEE--EEECTTSCEEEEEEEE--SCHHHHHTCSE
T ss_pred             CeEEEEC-cCHHHHHHHHHHHhCCC-------CEEEEEcCc--cceeeE--EEEcCCCceeeeeeee--cCccccCCCCE
Confidence            4899999 69999999999998764       799999864  333211  00000000 0011222  33567889999


Q ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      ||++....     .           +.++++.+..+.+++..++..+|..+
T Consensus        67 vi~~v~~~-----~-----------~~~v~~~l~~~l~~~~~vv~~~~g~~  101 (291)
T 1ks9_A           67 LLVTLKAW-----Q-----------VSDAVKSLASTLPVTTPILLIHNGMG  101 (291)
T ss_dssp             EEECSCGG-----G-----------HHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred             EEEEecHH-----h-----------HHHHHHHHHhhCCCCCEEEEecCCCC
Confidence            99985221     0           23445556555444566777788764

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.58  E-value=0.0028  Score=55.61  Aligned_cols=158  Identities=15%  Similarity=0.138  Sum_probs=93.9

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeC----
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATT----   73 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~----   73 (300)
                      |+.+.+.+.||||++-||..++..|++.|.       .|++.|++  +++++..+.++......   ...+++-..    
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga-------~Vv~~~~~--~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~   73 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDS-------IVVAVELL--EDRLNQIVQELRGMGKEVLGVKADVSKKKDVEE   73 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESC--HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEECC--HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence            455667899999999999999999998875       79999986  45665555555432110   001111000    


Q ss_pred             ---ChhhhcCCCcEEEEeCCCCC--CC--CCcHH---HHHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHHH
Q 022227           74 ---DAVEACTGVNIAVMVGGFPR--KE--GMERK---DVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNAL  139 (300)
Q Consensus        74 ---~~~~a~~~aDvVi~~ag~~~--~~--g~~r~---dl~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~  139 (300)
                         ...+.+-..|++|..||...  .+  ..+..   ..+..|+    -..+..++.+.+..  ...+|++++-...   
T Consensus        74 ~~~~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~IVnisS~~g~---  148 (254)
T 4fn4_A           74 FVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG--KGVIVNTASIAGI---  148 (254)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---
T ss_pred             HHHHHHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEechhhc---
Confidence               12234567899999999643  22  22332   3455665    44566667776664  3578888864431   


Q ss_pred             HHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       140 ~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                            .+.|..-.|+.++--...|-+.+|.+++  +..|+
T Consensus       149 ------~~~~~~~~Y~asKaal~~ltr~lA~ela--~~gIr  181 (254)
T 4fn4_A          149 ------RGGFAGAPYTVAKHGLIGLTRSIAAHYG--DQGIR  181 (254)
T ss_dssp             ------CSSSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             ------CCCCCChHHHHHHHHHHHHHHHHHHHhh--hhCeE
Confidence                  1223222345555555567777887775  44454

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.57  E-value=0.0016  Score=56.86  Aligned_cols=160  Identities=9%  Similarity=0.069  Sum_probs=90.2

Q ss_pred             CCCCCcEEEEEcCCC--hHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc----ccEEEeC-
Q 022227            1 MAKEPVRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL----KGVVATT-   73 (300)
Q Consensus         1 m~~~~~kV~IiGAaG--~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~----~~v~~~~-   73 (300)
                      |+.+.+.+.||||+|  -||..++..|++.|.       .|++.|+++  +.++.....+.+......    .+++-.. 
T Consensus         2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-------~Vvi~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~   72 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGA-------KLVFTYRKE--RSRKELEKLLEQLNQPEAHLYQIDVQSDEE   72 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTC-------EEEEEESSG--GGHHHHHHHHGGGTCSSCEEEECCTTCHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCCcEEEEEccCCCHHH
Confidence            455778899999876  699999999999885       799999864  333333223322211100    0110000 


Q ss_pred             ------ChhhhcCCCcEEEEeCCCCCCC-------CCcHHHH---HHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhH
Q 022227           74 ------DAVEACTGVNIAVMVGGFPRKE-------GMERKDV---MSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN  137 (300)
Q Consensus        74 ------~~~~a~~~aDvVi~~ag~~~~~-------g~~r~dl---~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~  137 (300)
                            ...+.+-..|++|+.||.....       ..++.++   +..|.......++.....-++...+|++|+-... 
T Consensus        73 v~~~~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~-  151 (256)
T 4fs3_A           73 VINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGE-  151 (256)
T ss_dssp             HHHHHHHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGT-
T ss_pred             HHHHHHHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccc-
Confidence                  1123355789999999864311       1233332   3456555555555555554445678888764321 


Q ss_pred             HHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          138 ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       138 ~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                              .+.|..-.|+.++---..+-+.+|.+++  +..|+
T Consensus       152 --------~~~~~~~~Y~asKaal~~ltr~lA~Ela--~~gIr  184 (256)
T 4fs3_A          152 --------FAVQNYNVMGVAKASLEANVKYLALDLG--PDNIR  184 (256)
T ss_dssp             --------SCCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             --------cCcccchhhHHHHHHHHHHHHHHHHHhC--ccCeE
Confidence                    1223222345555555567777787765  44555

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.57  E-value=0.0008  Score=64.41  Aligned_cols=99  Identities=14%  Similarity=0.026  Sum_probs=63.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC---
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG---   81 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~---   81 (300)
                      .+||+||| +|.+|..++..|...|.       +|.++|+++  ++++.......      ...+..+++..+++++   
T Consensus         5 ~~~IgvIG-~G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l~~~~~------~~gi~~~~s~~e~v~~l~~   68 (474)
T 2iz1_A            5 QANFGVVG-MAVMGKNLALNVESRGY-------TVAIYNRTT--SKTEEVFKEHQ------DKNLVFTKTLEEFVGSLEK   68 (474)
T ss_dssp             TBSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSH--HHHHHHHHHTT------TSCEEECSSHHHHHHTBCS
T ss_pred             CCcEEEEe-eHHHHHHHHHHHHhCCC-------EEEEEcCCH--HHHHHHHHhCc------CCCeEEeCCHHHHHhhccC
Confidence            46899999 79999999999998764       689999863  44432221111      0234556677777665   


Q ss_pred             CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                      +|+||++.-.    +           ..++++++.+....+++..+|..+|..
T Consensus        69 aDvVilavp~----~-----------~~v~~vl~~l~~~l~~g~iiId~s~~~  106 (474)
T 2iz1_A           69 PRRIMLMVQA----G-----------AATDATIKSLLPLLDIGDILIDGGNTH  106 (474)
T ss_dssp             SCEEEECCCT----T-----------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             CCEEEEEccC----c-----------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            9999997421    1           122344455555554455667777765

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.55  E-value=0.00018  Score=65.50  Aligned_cols=74  Identities=20%  Similarity=0.174  Sum_probs=48.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-cccEEEeCChhhhcCCCc
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGVN   83 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-~~~v~~~~~~~~a~~~aD   83 (300)
                      ++||+|+| +|.+|+.++..|+..|.       +|.++|+++  ++++....+-.....+. ...+..+++..+ ++++|
T Consensus        14 ~~kI~iIG-~G~mG~ala~~L~~~G~-------~V~~~~r~~--~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aD   82 (335)
T 1z82_A           14 EMRFFVLG-AGSWGTVFAQMLHENGE-------EVILWARRK--EIVDLINVSHTSPYVEESKITVRATNDLEE-IKKED   82 (335)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSH--HHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTE
T ss_pred             CCcEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCC
Confidence            57999999 79999999999998764       799999863  34432221100000000 003456667767 89999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +||++-
T Consensus        83 vVil~v   88 (335)
T 1z82_A           83 ILVIAI   88 (335)
T ss_dssp             EEEECS
T ss_pred             EEEEEC
Confidence            999974

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.54  E-value=0.00026  Score=63.54  Aligned_cols=78  Identities=10%  Similarity=0.132  Sum_probs=53.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||+||||+|.+|.+++..|...|+       ++.++|.++  +                       ++..+++++||+|
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~-------~V~~~~~~~--~-----------------------~~~~~~~~~aDvV   69 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGY-------PISILDRED--W-----------------------AVAESILANADVV   69 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-------CEEEECTTC--G-----------------------GGHHHHHTTCSEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC-------eEEEEECCc--c-----------------------cCHHHHhcCCCEE
Confidence            5899999679999999999988764       688898753  1                       0345678999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEec
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA  131 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~s  131 (300)
                      |++.-..                .+.++++.+..+.++++.++.++
T Consensus        70 ilavp~~----------------~~~~vl~~l~~~l~~~~iv~~~~   99 (298)
T 2pv7_A           70 IVSVPIN----------------LTLETIERLKPYLTENMLLADLT   99 (298)
T ss_dssp             EECSCGG----------------GHHHHHHHHGGGCCTTSEEEECC
T ss_pred             EEeCCHH----------------HHHHHHHHHHhhcCCCcEEEECC
Confidence            9984211                13455556665544566455444

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.54  E-value=0.00081  Score=64.48  Aligned_cols=102  Identities=9%  Similarity=0.075  Sum_probs=63.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC--
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--   80 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~--   80 (300)
                      +.++||+||| .|.+|.+++..|...|+       +|.++|+++  ++++..    .... ....++....++.++++  
T Consensus         2 ~~~~kIgiIG-lG~MG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l----~~~g-~~g~~i~~~~s~~e~v~~l   66 (484)
T 4gwg_A            2 NAQADIALIG-LAVMGQNLILNMNDHGF-------VVCAFNRTV--SKVDDF----LANE-AKGTKVVGAQSLKEMVSKL   66 (484)
T ss_dssp             -CCBSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSST--HHHHHH----HHTT-TTTSSCEECSSHHHHHHTB
T ss_pred             CCCCEEEEEC-hhHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHH----Hhcc-cCCCceeccCCHHHHHhhc
Confidence            4557999999 89999999999998875       699999874  443322    1110 00113344456666554  


Q ss_pred             -CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           81 -GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        81 -~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                       ++|+||++.-.    +           +.++++++.+...-+++..+|..||..
T Consensus        67 ~~aDvVil~Vp~----~-----------~~v~~vl~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           67 KKPRRIILLVKA----G-----------QAVDDFIEKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             CSSCEEEECSCS----S-----------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             cCCCEEEEecCC----h-----------HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence             69999997421    1           123344455555544566677777643

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=97.54  E-value=0.0003  Score=62.66  Aligned_cols=155  Identities=15%  Similarity=0.118  Sum_probs=84.2

Q ss_pred             CCCCCcEEEEEcCC--ChHHHHHHHHHHhcccCCCCCCeEEEEEecCC---------chhhhhhhhhhhhhhc-------
Q 022227            1 MAKEPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPP---------AAEALNGVKMELVDAA-------   62 (300)
Q Consensus         1 m~~~~~kV~IiGAa--G~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~---------~~~~l~g~~~dl~~~~-------   62 (300)
                      |+++.+++.||||+  |.||.+++..|++.|.       +|++.|+++         +.++++.. .++....       
T Consensus         4 ~~l~~k~~lVTGas~~~GIG~aia~~la~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   75 (297)
T 1d7o_A            4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGA-------EILVGTWVPALNIFETSLRRGKFDQS-RVLPDGSLMEIKKV   75 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTC-------EEEEEEEHHHHHHHHHHHHTTTTTGG-GBCTTSSBCCEEEE
T ss_pred             cccCCCEEEEECCCCCCChHHHHHHHHHHCCC-------eEEEeeccccchhhhhhhhhhHhhhh-hhhccccccccccc
Confidence            34456789999998  9999999999998875       788887421         00111110 1111000       


Q ss_pred             cCCc------ccEEE------------eCChhh-------hcCCCcEEEEeCCCCC---CC--CCcH---HHHHHhhHHH
Q 022227           63 FPLL------KGVVA------------TTDAVE-------ACTGVNIAVMVGGFPR---KE--GMER---KDVMSKNVSI  109 (300)
Q Consensus        63 ~~~~------~~v~~------------~~~~~~-------a~~~aDvVi~~ag~~~---~~--g~~r---~dl~~~N~~i  109 (300)
                      .+..      ..+..            ..+..+       .+...|++|+.||...   .+  ..+.   ...+..|+..
T Consensus        76 ~~~~~~~~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g  155 (297)
T 1d7o_A           76 YPLDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYS  155 (297)
T ss_dssp             EEECTTCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHH
T ss_pred             cccceeccchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhH
Confidence            0000      00000            011222       2336899999998632   11  1222   3457789888


Q ss_pred             HHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCC-cEEeeehhhHHHHHHHHHHHc
Q 022227          110 YKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAK-NITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       110 ~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~-~i~~~t~ld~~R~~~~la~~l  172 (300)
                      ...+.+.+.++-.+..++|++|+....         .+.|.. ..|+.++.-...+.+.+|.++
T Consensus       156 ~~~l~~~~~~~m~~~g~iv~isS~~~~---------~~~~~~~~~Y~asKaa~~~~~~~la~e~  210 (297)
T 1d7o_A          156 FVSLLSHFLPIMNPGGASISLTYIASE---------RIIPGYGGGMSSAKAALESDTRVLAFEA  210 (297)
T ss_dssp             HHHHHHHHGGGEEEEEEEEEEECGGGT---------SCCTTCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCceEEEEeccccc---------cCCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            888888877652223467777764431         122322 235555555556666666654

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.53  E-value=0.0011  Score=58.39  Aligned_cols=92  Identities=20%  Similarity=0.166  Sum_probs=58.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+|+| +|.+|..++..|...|.       ++.++|.++  ++++.    +......    ....++..++ +++|+|
T Consensus         1 m~i~iiG-~G~~G~~~a~~l~~~g~-------~V~~~~~~~--~~~~~----~~~~g~~----~~~~~~~~~~-~~~D~v   61 (279)
T 2f1k_A            1 MKIGVVG-LGLIGASLAGDLRRRGH-------YLIGVSRQQ--STCEK----AVERQLV----DEAGQDLSLL-QTAKII   61 (279)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHH----HHHTTSC----SEEESCGGGG-TTCSEE
T ss_pred             CEEEEEc-CcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHH----HHhCCCC----ccccCCHHHh-CCCCEE
Confidence            4899999 79999999999988764       789999863  33332    1111100    0234566676 999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      |++...                ..+.++++.+....+++..++.++|
T Consensus        62 i~av~~----------------~~~~~~~~~l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           62 FLCTPI----------------QLILPTLEKLIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             EECSCH----------------HHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             EEECCH----------------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence            998421                1234555666665545665666644

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.53  E-value=0.00039  Score=62.29  Aligned_cols=108  Identities=17%  Similarity=0.201  Sum_probs=61.2

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhc-----c-cCCCCCCeEEEEEecCCchhhhhhhhh--hhhhhccC---CcccE
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARG-----V-MLGTDQPVILHMLDIPPAAEALNGVKM--ELVDAAFP---LLKGV   69 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~-----~-~~~~~~~~~l~L~D~~~~~~~l~g~~~--dl~~~~~~---~~~~v   69 (300)
                      |+.++|||+|+| +|.+|+.++..|.+.     | .       +|.++|+ +  ++++....  .+.-....   ...++
T Consensus         4 m~~~~m~I~iiG-~G~mG~~~a~~L~~~~~~~~g~~-------~V~~~~r-~--~~~~~l~~~~g~~~~~~~~~~~~~~~   72 (317)
T 2qyt_A            4 MNQQPIKIAVFG-LGGVGGYYGAMLALRAAATDGLL-------EVSWIAR-G--AHLEAIRAAGGLRVVTPSRDFLARPT   72 (317)
T ss_dssp             ---CCEEEEEEC-CSHHHHHHHHHHHHHHHHTTSSE-------EEEEECC-H--HHHHHHHHHTSEEEECSSCEEEECCS
T ss_pred             CCCCCCEEEEEC-cCHHHHHHHHHHHhCccccCCCC-------CEEEEEc-H--HHHHHHHhcCCeEEEeCCCCeEEecc
Confidence            666678999999 799999999999876     5 4       7999987 2  33322111  00000000   01122


Q ss_pred             EEeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh
Q 022227           70 VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT  136 (300)
Q Consensus        70 ~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~  136 (300)
                      ..+++. ++++++|+||++--..    .            +.++++.+..+-.++..+|.++|..+.
T Consensus        73 ~~~~~~-~~~~~~D~vil~vk~~----~------------~~~v~~~i~~~l~~~~~iv~~~nG~~~  122 (317)
T 2qyt_A           73 CVTDNP-AEVGTVDYILFCTKDY----D------------MERGVAEIRPMIGQNTKILPLLNGADI  122 (317)
T ss_dssp             EEESCH-HHHCCEEEEEECCSSS----C------------HHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred             eEecCc-cccCCCCEEEEecCcc----c------------HHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence            334443 5678999999984221    1            134445555543335556667887653

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.53  E-value=0.00041  Score=62.41  Aligned_cols=65  Identities=18%  Similarity=0.239  Sum_probs=48.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .+||+||| .|.+|..++..|...|+       +|.++|+++  ++++.    +...      .....++..+++++||+
T Consensus         9 ~~~IgiIG-~G~mG~~~A~~l~~~G~-------~V~~~dr~~--~~~~~----~~~~------g~~~~~~~~e~~~~aDv   68 (306)
T 3l6d_A            9 EFDVSVIG-LGAMGTIMAQVLLKQGK-------RVAIWNRSP--GKAAA----LVAA------GAHLCESVKAALSASPA   68 (306)
T ss_dssp             SCSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSH--HHHHH----HHHH------TCEECSSHHHHHHHSSE
T ss_pred             CCeEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHH----HHHC------CCeecCCHHHHHhcCCE
Confidence            46899999 89999999999998775       689999863  44332    2111      12345578888999999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      ||++.
T Consensus        69 Vi~~v   73 (306)
T 3l6d_A           69 TIFVL   73 (306)
T ss_dssp             EEECC
T ss_pred             EEEEe
Confidence            99974

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.52  E-value=0.0008  Score=64.49  Aligned_cols=102  Identities=15%  Similarity=0.080  Sum_probs=61.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC---CC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT---GV   82 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~---~a   82 (300)
                      |||+|+| +|.+|+.++..|...|.       +|.++|+++  ++++....+.  ...+...++..+++..++++   ++
T Consensus         2 MkIgVIG-~G~mG~~lA~~La~~G~-------~V~v~dr~~--~~~~~l~~~~--g~~~~~~~i~~~~~~~e~v~~l~~a   69 (478)
T 1pgj_A            2 MDVGVVG-LGVMGANLALNIAEKGF-------KVAVFNRTY--SKSEEFMKAN--ASAPFAGNLKAFETMEAFAASLKKP   69 (478)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSH--HHHHHHHHHT--TTSTTGGGEEECSCHHHHHHHBCSS
T ss_pred             CEEEEEC-hHHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhc--CCCCCCCCeEEECCHHHHHhcccCC
Confidence            5899999 79999999999998774       689999863  4443222111  10011123556667766665   59


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                      |+||++.-.    +.           .++++++.+....+++..+|..+|..
T Consensus        70 DvVilaVp~----~~-----------~v~~vl~~l~~~l~~g~iIId~sng~  106 (478)
T 1pgj_A           70 RKALILVQA----GA-----------ATDSTIEQLKKVFEKGDILVDTGNAH  106 (478)
T ss_dssp             CEEEECCCC----SH-----------HHHHHHHHHHHHCCTTCEEEECCCCC
T ss_pred             CEEEEecCC----hH-----------HHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            999998421    11           12233344444443455667677765

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.52  E-value=0.0011  Score=58.62  Aligned_cols=68  Identities=21%  Similarity=0.262  Sum_probs=46.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC-CCcE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT-GVNI   84 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~-~aDv   84 (300)
                      +||+|+| +|.+|..++..|...|.-     .+|+++|.++  ++++.    +....  .  ....+++..++++ ++|+
T Consensus         2 ~~I~iIG-~G~mG~~~a~~l~~~g~~-----~~V~~~d~~~--~~~~~----~~~~g--~--~~~~~~~~~~~~~~~aDv   65 (281)
T 2g5c_A            2 QNVLIVG-VGFMGGSFAKSLRRSGFK-----GKIYGYDINP--ESISK----AVDLG--I--IDEGTTSIAKVEDFSPDF   65 (281)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHHTTCC-----SEEEEECSCH--HHHHH----HHHTT--S--CSEEESCGGGGGGTCCSE
T ss_pred             cEEEEEe-cCHHHHHHHHHHHhcCCC-----cEEEEEeCCH--HHHHH----HHHCC--C--cccccCCHHHHhcCCCCE
Confidence            5899999 799999999999877631     2688999863  33321    11111  0  0122446677888 9999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      ||++.
T Consensus        66 Vilav   70 (281)
T 2g5c_A           66 VMLSS   70 (281)
T ss_dssp             EEECS
T ss_pred             EEEcC
Confidence            99984

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.52  E-value=0.00049  Score=60.26  Aligned_cols=146  Identities=14%  Similarity=0.083  Sum_probs=84.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEe-------CChhhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT-------TDAVEA   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~-------~~~~~a   78 (300)
                      ++|.||||++-||..++..|++.|.       .|++.|+++  ++++....+..+.. ....+++-.       ....+.
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga-------~V~~~~~~~--~~~~~~~~~~~~~~-~~~~Dv~~~~~v~~~v~~~~~~   72 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGD-------KVCFIDIDE--KRSADFAKERPNLF-YFHGDVADPLTLKKFVEYAMEK   72 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHTTCTTEE-EEECCTTSHHHHHHHHHHHHHH
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhcCCEE-EEEecCCCHHHHHHHHHHHHHH
Confidence            5799999999999999999999885       799999863  33332222111110 000000000       012344


Q ss_pred             cCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCC
Q 022227           79 CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI  148 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~  148 (300)
                      +...|++|..||.....   ..+.   ...+..|+...    +...+.+.+.   ...+|++++-...         .+.
T Consensus        73 ~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~---~G~IInisS~~~~---------~~~  140 (247)
T 3ged_A           73 LQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKN---KGRIINIASTRAF---------QSE  140 (247)
T ss_dssp             HSCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT---TCEEEEECCGGGT---------SCC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc---CCcEEEEeecccc---------cCC
Confidence            66789999999875432   2232   23456665544    4445555543   2467887764431         123


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          149 PAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      |..-.|+.++--...|-+.+|.+++
T Consensus       141 ~~~~~Y~asKaal~~ltk~lA~ela  165 (247)
T 3ged_A          141 PDSEAYASAKGGIVALTHALAMSLG  165 (247)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHC
Confidence            3222355555555677888888887

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=97.51  E-value=0.00013  Score=70.05  Aligned_cols=120  Identities=13%  Similarity=0.098  Sum_probs=71.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch-hhhhhhhhhhhhhccC---CcccEEEeCChhhhcC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-EALNGVKMELVDAAFP---LLKGVVATTDAVEACT   80 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~-~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a~~   80 (300)
                      ..++.||||+|.+|..++..|+..|.-      .|++++++... +.++....++......   ...++.-..+..+.++
T Consensus       226 ~~~vLITGgtGgIG~~la~~La~~G~~------~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~  299 (486)
T 2fr1_A          226 TGTVLVTGGTGGVGGQIARWLARRGAP------HLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLG  299 (486)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCS------EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCC------EEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHH
Confidence            468999999999999999999987741      48889886421 1122222223221100   0001100112233344


Q ss_pred             CC------cEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           81 GV------NIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        81 ~a------DvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      .+      |.|||+||.....   ..+.   ...+..|+.....+.+.+.+... + ++|++|+
T Consensus       300 ~i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~-~-~~V~~SS  361 (486)
T 2fr1_A          300 GIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDL-T-AFVLFSS  361 (486)
T ss_dssp             TSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCC-S-EEEEEEE
T ss_pred             HHHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCC-C-EEEEEcC
Confidence            44      9999999986432   1222   34566799999999998877632 3 5777775

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=97.51  E-value=0.00053  Score=60.37  Aligned_cols=150  Identities=13%  Similarity=0.072  Sum_probs=84.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEe-------
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVAT-------   72 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~-------   72 (300)
                      .+.+.+.||||++-||..++..|++.|.       .+++.|+++..  .+ ....+.....   ....+++-.       
T Consensus         5 L~gKvalVTGas~GIG~aia~~la~~Ga-------~Vv~~~r~~~~--~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v   74 (258)
T 4gkb_A            5 LQDKVVIVTGGASGIGGAISMRLAEERA-------IPVVFARHAPD--GA-FLDALAQRQPRATYLPVELQDDAQCRDAV   74 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCCC--HH-HHHHHHHHCTTCEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEECCccc--HH-HHHHHHhcCCCEEEEEeecCCHHHHHHHH
Confidence            3567899999999999999999999875       78899986422  11 1111111110   000011000       


Q ss_pred             CChhhhcCCCcEEEEeCCCCCCCC--CcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           73 TDAVEACTGVNIAVMVGGFPRKEG--MERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        73 ~~~~~a~~~aDvVi~~ag~~~~~g--~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                      ....+.+-..|++|..||......  .+..   ..+..|+.    ..+...+.+++.  + ..+|++++-...       
T Consensus        75 ~~~~~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~-G~IVnisS~~~~-------  144 (258)
T 4gkb_A           75 AQTIATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKAT--R-GAIVNISSKTAV-------  144 (258)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--T-CEEEEECCTHHH-------
T ss_pred             HHHHHHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--C-CeEEEEeehhhc-------
Confidence            012334567899999999864332  2333   23555654    345555556543  2 368888764431       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCC
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNV  174 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v  174 (300)
                      .  +.|..-.|+.++--...+-+.+|.+++-
T Consensus       145 ~--~~~~~~~Y~asKaav~~ltr~lA~ela~  173 (258)
T 4gkb_A          145 T--GQGNTSGYCASKGAQLALTREWAVALRE  173 (258)
T ss_dssp             H--CCSSCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             c--CCCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence            1  2332223555555556677778887753

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=97.49  E-value=0.00051  Score=65.41  Aligned_cols=151  Identities=22%  Similarity=0.224  Sum_probs=85.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCCh-------hh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDA-------VE   77 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~-------~~   77 (300)
                      .+.+.||||+|.||..++..|++.|.       +++++|.++..+.++....++. .. ....++.-..+.       .+
T Consensus       213 gk~~LVTGgsgGIG~aiA~~La~~Ga-------~Vvl~~r~~~~~~l~~~~~~~~-~~-~~~~Dvtd~~~v~~~~~~~~~  283 (454)
T 3u0b_A          213 GKVAVVTGAARGIGATIAEVFARDGA-------TVVAIDVDGAAEDLKRVADKVG-GT-ALTLDVTADDAVDKITAHVTE  283 (454)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEECGGGHHHHHHHHHHHT-CE-EEECCTTSTTHHHHHHHHHHH
T ss_pred             CCEEEEeCCchHHHHHHHHHHHHCCC-------EEEEEeCCccHHHHHHHHHHcC-Ce-EEEEecCCHHHHHHHHHHHHH
Confidence            46899999999999999999998875       7889988543232222111110 00 000000000111       12


Q ss_pred             hcCC-CcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEecCchhhHHHHHHHHCCCC
Q 022227           78 ACTG-VNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILKEFAPSI  148 (300)
Q Consensus        78 a~~~-aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~--~~~~viv~sNP~~~~~~~~~~~~~~~  148 (300)
                      .+.+ .|+||+.||.....   .++.   ...+..|+.....+.+.+...-.  +...||++|+-...       .  +.
T Consensus       284 ~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~-------~--g~  354 (454)
T 3u0b_A          284 HHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGI-------A--GN  354 (454)
T ss_dssp             HSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHH-------H--CC
T ss_pred             HcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhC-------C--CC
Confidence            2234 89999999986532   1222   34577898888888888766421  13467887764321       1  22


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          149 PAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      |..-.|+.++.-...+.+.++.++.
T Consensus       355 ~g~~~YaasKaal~~l~~~la~e~~  379 (454)
T 3u0b_A          355 RGQTNYATTKAGMIGLAEALAPVLA  379 (454)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            3222345555444556666776664

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.48  E-value=0.00026  Score=63.86  Aligned_cols=106  Identities=16%  Similarity=0.214  Sum_probs=62.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhh--hccCCcccEEEeCChhhhcCCCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD--AAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~--~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      |||+|+| +|.+|..++..|...|.       +|.+++.++ .+.++..-..+..  ..+. ...+..+++. ++++++|
T Consensus         3 mkI~IiG-aGaiG~~~a~~L~~~g~-------~V~~~~r~~-~~~i~~~g~~~~~~~g~~~-~~~~~~~~~~-~~~~~~D   71 (312)
T 3hn2_A            3 LRIAIVG-AGALGLYYGALLQRSGE-------DVHFLLRRD-YEAIAGNGLKVFSINGDFT-LPHVKGYRAP-EEIGPMD   71 (312)
T ss_dssp             -CEEEEC-CSTTHHHHHHHHHHTSC-------CEEEECSTT-HHHHHHTCEEEEETTCCEE-ESCCCEESCH-HHHCCCS
T ss_pred             CEEEEEC-cCHHHHHHHHHHHHCCC-------eEEEEEcCc-HHHHHhCCCEEEcCCCeEE-EeeceeecCH-HHcCCCC
Confidence            6899999 79999999999998763       689999863 2222110000110  0000 0123344555 4578999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA  138 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~  138 (300)
                      +||++.-    +..            +.++++.++.+-.++..+|.+.|-.+...
T Consensus        72 ~vilavk----~~~------------~~~~l~~l~~~l~~~~~iv~l~nGi~~~~  110 (312)
T 3hn2_A           72 LVLVGLK----TFA------------NSRYEELIRPLVEEGTQILTLQNGLGNEE  110 (312)
T ss_dssp             EEEECCC----GGG------------GGGHHHHHGGGCCTTCEEEECCSSSSHHH
T ss_pred             EEEEecC----CCC------------cHHHHHHHHhhcCCCCEEEEecCCCCcHH
Confidence            9999741    111            12445556655445667888889876443

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=97.47  E-value=0.00047  Score=68.09  Aligned_cols=152  Identities=13%  Similarity=0.074  Sum_probs=76.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC-------chhhhhhhhhhhhhhccCCcccEEEeCCh
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-------AAEALNGVKMELVDAAFPLLKGVVATTDA   75 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~-------~~~~l~g~~~dl~~~~~~~~~~v~~~~~~   75 (300)
                      .+.+.+.||||+|.||.+++..|++.|.       .|++.|+..       +.++++....++..........+.-..+.
T Consensus        17 l~gk~~lVTGas~GIG~aiA~~La~~Ga-------~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~   89 (613)
T 3oml_A           17 YDGRVAVVTGAGAGLGREYALLFAERGA-------KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDG   89 (613)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHH
Confidence            3456899999999999999999999875       788888611       12333333333332111100011000111


Q ss_pred             hh-------hcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEecCchhhHH
Q 022227           76 VE-------ACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNA  138 (300)
Q Consensus        76 ~~-------a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~~~~~~viv~sNP~~~~~  138 (300)
                      .+       .+...|++|+.||.....   ..+.   ...+..|+.....+.+.+    ++..  ..+||++|+....  
T Consensus        90 ~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~--~g~IV~isS~a~~--  165 (613)
T 3oml_A           90 AKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQN--YGRIIMTSSNSGI--  165 (613)
T ss_dssp             HHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CEEEEEECCHHHH--
T ss_pred             HHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEECCHHHc--
Confidence            22       233679999999986432   2232   234667776655555544    4443  3578888764431  


Q ss_pred             HHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       139 ~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                           .  +.+..-.|+.++.-...+.+.+|.++
T Consensus       166 -----~--~~~~~~~Y~asKaal~~lt~~la~e~  192 (613)
T 3oml_A          166 -----Y--GNFGQVNYTAAKMGLIGLANTVAIEG  192 (613)
T ss_dssp             -----H--CCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----C--CCCCChHHHHHHHHHHHHHHHHHHHh
Confidence                 1  11212234444444445555566555

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.46  E-value=0.00012  Score=67.72  Aligned_cols=75  Identities=23%  Similarity=0.243  Sum_probs=44.1

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      |+.+.|||+|+|| |+||+.++..|.+..        ++.+.|++.  ++++..    .+.......++.-...+.+.++
T Consensus        12 ~~g~~mkilvlGa-G~vG~~~~~~L~~~~--------~v~~~~~~~--~~~~~~----~~~~~~~~~d~~d~~~l~~~~~   76 (365)
T 3abi_A           12 IEGRHMKVLILGA-GNIGRAIAWDLKDEF--------DVYIGDVNN--ENLEKV----KEFATPLKVDASNFDKLVEVMK   76 (365)
T ss_dssp             ----CCEEEEECC-SHHHHHHHHHHTTTS--------EEEEEESCH--HHHHHH----TTTSEEEECCTTCHHHHHHHHT
T ss_pred             ccCCccEEEEECC-CHHHHHHHHHHhcCC--------CeEEEEcCH--HHHHHH----hccCCcEEEecCCHHHHHHHHh
Confidence            4556789999995 999999998876431        788999863  444321    1111000000000113566789


Q ss_pred             CCcEEEEeCC
Q 022227           81 GVNIAVMVGG   90 (300)
Q Consensus        81 ~aDvVi~~ag   90 (300)
                      ++|+||.+++
T Consensus        77 ~~DvVi~~~p   86 (365)
T 3abi_A           77 EFELVIGALP   86 (365)
T ss_dssp             TCSEEEECCC
T ss_pred             CCCEEEEecC
Confidence            9999999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.39  E-value=0.00024  Score=56.47  Aligned_cols=71  Identities=8%  Similarity=0.106  Sum_probs=49.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .+||+|+| +|.+|..++..|...|.       ++.++|+++  ++++..+.++.       ..+....+..++++++|+
T Consensus        21 ~~~v~iiG-~G~iG~~~a~~l~~~g~-------~v~v~~r~~--~~~~~~a~~~~-------~~~~~~~~~~~~~~~~Di   83 (144)
T 3oj0_A           21 GNKILLVG-NGMLASEIAPYFSYPQY-------KVTVAGRNI--DHVRAFAEKYE-------YEYVLINDIDSLIKNNDV   83 (144)
T ss_dssp             CCEEEEEC-CSHHHHHHGGGCCTTTC-------EEEEEESCH--HHHHHHHHHHT-------CEEEECSCHHHHHHTCSE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEcCCH--HHHHHHHHHhC-------CceEeecCHHHHhcCCCE
Confidence            47999999 69999999888776543       688999863  44443332221       123344577888999999


Q ss_pred             EEEeCCCC
Q 022227           85 AVMVGGFP   92 (300)
Q Consensus        85 Vi~~ag~~   92 (300)
                      ||.+.+.+
T Consensus        84 vi~at~~~   91 (144)
T 3oj0_A           84 IITATSSK   91 (144)
T ss_dssp             EEECSCCS
T ss_pred             EEEeCCCC
Confidence            99986554

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.38  E-value=0.00056  Score=60.17  Aligned_cols=156  Identities=14%  Similarity=0.157  Sum_probs=90.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEeC-------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATT-------   73 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~-------   73 (300)
                      +.+.+.||||++-||..++..|++.|.       .|++.|+++  ++++..+.++.....   ....+++-..       
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga-------~Vvi~~~~~--~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~   78 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA-------RVILNDIRA--TLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFS   78 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEECCSCH--HHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHH
Confidence            457889999999999999999999885       799999863  555544444433211   0111111111       


Q ss_pred             ChhhhcCCCcEEEEeCCCCCCCC---CcHH---HHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           74 DAVEACTGVNIAVMVGGFPRKEG---MERK---DVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        74 ~~~~a~~~aDvVi~~ag~~~~~g---~~r~---dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                      ...+.+-..|++|..||......   .+..   ..+..|+..    .+..++.+.+... ...+|++++-...       
T Consensus        79 ~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~-~G~IVnisS~~~~-------  150 (255)
T 4g81_D           79 KLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNS-GGKIINIGSLTSQ-------  150 (255)
T ss_dssp             HHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGT-------
T ss_pred             HHHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC-CCEEEEEeehhhc-------
Confidence            12233456899999999764322   2222   345666544    4555666654433 3578888865431       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                        .+.|..-.|+.++--...+-+.+|.+++  +..|+
T Consensus       151 --~~~~~~~~Y~asKaal~~ltr~lA~ela--~~gIr  183 (255)
T 4g81_D          151 --AARPTVAPYTAAKGGIKMLTCSMAAEWA--QFNIQ  183 (255)
T ss_dssp             --SBCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             --CCCCCchhHHHHHHHHHHHHHHHHHHhc--ccCeE
Confidence              1223222345555555567777888775  44454

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.36  E-value=0.0017  Score=56.81  Aligned_cols=154  Identities=18%  Similarity=0.152  Sum_probs=85.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEeCChhhh--
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAVEA--   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~~~~~a--   78 (300)
                      +.+.+.||||++-||..++..|++.|.       .|++.|++..++.++    .+.....   ....+++-..+..+.  
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga-------~Vvi~~r~~~~~~~~----~~~~~g~~~~~~~~Dv~d~~~v~~~~~   76 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGA-------EVVCAARRAPDETLD----IIAKDGGNASALLIDFADPLAAKDSFT   76 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSCCHHHHH----HHHHTTCCEEEEECCTTSTTTTTTSST
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCC-------EEEEEeCCcHHHHHH----HHHHhCCcEEEEEccCCCHHHHHHHHH
Confidence            356788999999999999999999885       799999875322221    1111100   000111000111111  


Q ss_pred             cCCCcEEEEeCCCCCCCC---CcHH---HHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCC
Q 022227           79 CTGVNIAVMVGGFPRKEG---MERK---DVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI  148 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~~g---~~r~---dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~  148 (300)
                      .-..|++|..||......   .+..   ..+..|+...    +..++.+.+.+. ...+|++++-...         .+.
T Consensus        77 ~g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~-~G~IVnisS~~~~---------~g~  146 (247)
T 4hp8_A           77 DAGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGR-SGKVVNIASLLSF---------QGG  146 (247)
T ss_dssp             TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGT---------SCC
T ss_pred             hCCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-CcEEEEEechhhC---------CCC
Confidence            234799999999864322   2322   3466676554    445555655543 3578888864321         122


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      |..-.|+.++--..-|-+.+|.+++  +..|+
T Consensus       147 ~~~~~Y~asKaav~~ltr~lA~Ela--~~gIr  176 (247)
T 4hp8_A          147 IRVPSYTAAKHGVAGLTKLLANEWA--AKGIN  176 (247)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHh--hcCeE
Confidence            3211244444445566777787775  34444

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.36  E-value=0.0017  Score=62.57  Aligned_cols=100  Identities=9%  Similarity=0.050  Sum_probs=63.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC---
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG---   81 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~---   81 (300)
                      +.||+||| +|.+|+.++..|+..|.       +|.++|+++  ++++.    +.....+ ...+..+++..+++++   
T Consensus        10 ~~~IgvIG-lG~MG~~lA~~La~~G~-------~V~v~dr~~--~~~~~----l~~~~~~-~~gi~~~~s~~e~v~~l~~   74 (497)
T 2p4q_A           10 SADFGLIG-LAVMGQNLILNAADHGF-------TVCAYNRTQ--SKVDH----FLANEAK-GKSIIGATSIEDFISKLKR   74 (497)
T ss_dssp             CCSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSS--HHHHH----HHHTTTT-TSSEECCSSHHHHHHTSCS
T ss_pred             CCCEEEEe-eHHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHH----HHccccc-CCCeEEeCCHHHHHhcCCC
Confidence            35899999 79999999999998875       689999864  34332    2210000 0234455677777766   


Q ss_pred             CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                      +|+||++.-.    +           ..++++++.+....+++..+|..+|..
T Consensus        75 aDvVil~Vp~----~-----------~~v~~vl~~l~~~l~~g~iIId~s~~~  112 (497)
T 2p4q_A           75 PRKVMLLVKA----G-----------APVDALINQIVPLLEKGDIIIDGGNSH  112 (497)
T ss_dssp             SCEEEECCCS----S-----------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             CCEEEEEcCC----h-----------HHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence            9999998421    1           123344556666555555677777754

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.36  E-value=0.00042  Score=63.83  Aligned_cols=104  Identities=13%  Similarity=0.126  Sum_probs=57.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcc-cCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEE-eCChhhhcCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGV-MLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA-TTDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~-~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~-~~~~~~a~~~   81 (300)
                      +++||+|+||+|.+|..++..|...+ +-+  -.++++++-...+..    ...+-.+..+.....+.. ..+ .+++++
T Consensus         8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~--~~~ei~~l~s~~~ag----k~~~~~~~~l~~~~~~~~~~~~-~~~~~~   80 (352)
T 2nqt_A            8 NATKVAVAGASGYAGGEILRLLLGHPAYAD--GRLRIGALTAATSAG----STLGEHHPHLTPLAHRVVEPTE-AAVLGG   80 (352)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHTCHHHHT--TSEEEEEEEESSCTT----SBGGGTCTTCGGGTTCBCEECC-HHHHTT
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHcCCCCCC--ccEEEEEEECCCcCC----CchhhhcccccccceeeeccCC-HHHhcC
Confidence            34799999999999999999988765 000  013677664322111    111111111000011111 123 456889


Q ss_pred             CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                      +|+||.+.|...                .+++++.+ +.   ++++|..|++.
T Consensus        81 ~DvVf~alg~~~----------------s~~~~~~~-~~---G~~vIDlSa~~  113 (352)
T 2nqt_A           81 HDAVFLALPHGH----------------SAVLAQQL-SP---ETLIIDCGADF  113 (352)
T ss_dssp             CSEEEECCTTSC----------------CHHHHHHS-CT---TSEEEECSSTT
T ss_pred             CCEEEECCCCcc----------------hHHHHHHH-hC---CCEEEEECCCc
Confidence            999999865321                23556655 43   46788888875

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.34  E-value=0.0012  Score=53.05  Aligned_cols=35  Identities=11%  Similarity=0.275  Sum_probs=29.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      +.++|+|+| +|.+|..++..|...|.       +++++|.++
T Consensus        18 ~~~~v~IiG-~G~iG~~la~~L~~~g~-------~V~vid~~~   52 (155)
T 2g1u_A           18 KSKYIVIFG-CGRLGSLIANLASSSGH-------SVVVVDKNE   52 (155)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCG
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEECCH
Confidence            457999999 69999999999988764       799999864

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.33  E-value=0.0018  Score=62.12  Aligned_cols=69  Identities=9%  Similarity=0.110  Sum_probs=47.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc---CCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC---TGV   82 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~---~~a   82 (300)
                      +||+||| +|.+|+.++..|...|.       +|.++|+++  ++++.....   .. + ...+..+++..+++   +++
T Consensus         3 m~IgvIG-~G~mG~~lA~~La~~G~-------~V~v~dr~~--~~~~~l~~~---~~-~-g~gi~~~~~~~e~v~~l~~a   67 (482)
T 2pgd_A            3 ADIALIG-LAVMGQNLILNMNDHGF-------VVCAFNRTV--SKVDDFLAN---EA-K-GTKVLGAHSLEEMVSKLKKP   67 (482)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSST--HHHHHHHHT---TT-T-TSSCEECSSHHHHHHHBCSS
T ss_pred             CeEEEEC-hHHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHhc---cc-c-CCCeEEeCCHHHHHhhccCC
Confidence            6899999 79999999999998764       689999864  443322110   00 0 02344556776665   599


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |+||++.
T Consensus        68 DvVilaV   74 (482)
T 2pgd_A           68 RRIILLV   74 (482)
T ss_dssp             CEEEECS
T ss_pred             CEEEEeC
Confidence            9999974

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=97.31  E-value=0.00093  Score=58.87  Aligned_cols=152  Identities=14%  Similarity=0.110  Sum_probs=88.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh---hhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN---GVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~---g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      +.+.+.||||++-||..++..|++.|.       .|++.|+++. +.+.   ....|+.+....  ..  ......+.+-
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga-------~V~~~~r~~~-~~~~~~~~~~~Dv~~~~~v--~~--~~~~~~~~~G   77 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGA-------QVLTTARARP-EGLPEELFVEADLTTKEGC--AI--VAEATRQRLG   77 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTC-------EEEEEESSCC-TTSCTTTEEECCTTSHHHH--HH--HHHHHHHHTS
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCC-------EEEEEECCch-hCCCcEEEEEcCCCCHHHH--HH--HHHHHHHHcC
Confidence            457899999999999999999999885       7899998642 2221   122344432210  00  0012344566


Q ss_pred             CCcEEEEeCCCCCCC-----CCcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCC
Q 022227           81 GVNIAVMVGGFPRKE-----GMERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI  148 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~-----g~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~  148 (300)
                      ..|++|..||.....     ..+..   ..+..|+.    ..+...+.+.+..  ...+|++++....         .+.
T Consensus        78 ~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~Iv~isS~~~~---------~~~  146 (261)
T 4h15_A           78 GVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARG--SGVVVHVTSIQRV---------LPL  146 (261)
T ss_dssp             SCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------SCC
T ss_pred             CCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcC--CceEEEEEehhhc---------cCC
Confidence            789999999864321     12332   34556654    4566667776664  3567887764421         122


Q ss_pred             CCCc-EEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          149 PAKN-ITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       149 p~~~-i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      |... .|+.++--...+-+.+|.+++  +..|+
T Consensus       147 ~~~~~~Y~asKaal~~lt~~lA~Ela--~~gIr  177 (261)
T 4h15_A          147 PESTTAYAAAKAALSTYSKAMSKEVS--PKGVR  177 (261)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhh--hhCeE
Confidence            3222 244455455567777787765  44454

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.25  E-value=0.0036  Score=48.52  Aligned_cols=34  Identities=21%  Similarity=0.496  Sum_probs=28.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      .|||+|+| +|++|+.++..|...+.       +++++|.++
T Consensus         4 ~m~i~IiG-~G~iG~~~a~~L~~~g~-------~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAG-IGRVGYTLAKSLSEKGH-------DIVLIDIDK   37 (140)
T ss_dssp             -CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCH
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEECCH
Confidence            47999999 69999999999988763       799999863

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.24  E-value=0.00078  Score=53.94  Aligned_cols=34  Identities=6%  Similarity=0.057  Sum_probs=28.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      ...||.|+| +|.+|+.++..|...|.       +++++|.+
T Consensus         2 ~~~~vlI~G-~G~vG~~la~~L~~~g~-------~V~vid~~   35 (153)
T 1id1_A            2 RKDHFIVCG-HSILAINTILQLNQRGQ-------NVTVISNL   35 (153)
T ss_dssp             CCSCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEECC
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHCCC-------CEEEEECC
Confidence            345899999 69999999999988764       68999985

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.23  E-value=0.0065  Score=49.87  Aligned_cols=134  Identities=16%  Similarity=0.124  Sum_probs=73.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEe--CC---hhhh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT--TD---AVEA   78 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~-~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~--~~---~~~a   78 (300)
                      .++|+|+| .|.+|..++..|... |.       +++++|.++  ++++.    +.....    .+...  ++   +.++
T Consensus        39 ~~~v~IiG-~G~~G~~~a~~L~~~~g~-------~V~vid~~~--~~~~~----~~~~g~----~~~~gd~~~~~~l~~~  100 (183)
T 3c85_A           39 HAQVLILG-MGRIGTGAYDELRARYGK-------ISLGIEIRE--EAAQQ----HRSEGR----NVISGDATDPDFWERI  100 (183)
T ss_dssp             TCSEEEEC-CSHHHHHHHHHHHHHHCS-------CEEEEESCH--HHHHH----HHHTTC----CEEECCTTCHHHHHTB
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHhccCC-------eEEEEECCH--HHHHH----HHHCCC----CEEEcCCCCHHHHHhc
Confidence            35899999 799999999999887 74       689999863  33331    111110    11110  11   2333


Q ss_pred             --cCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEee
Q 022227           79 --CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL  156 (300)
Q Consensus        79 --~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~  156 (300)
                        ++++|+||++.+..           ..|.    .++..+++.++ +..++..+|-.+.. ..+.+.  |.  ..+...
T Consensus       101 ~~~~~ad~vi~~~~~~-----------~~~~----~~~~~~~~~~~-~~~ii~~~~~~~~~-~~l~~~--G~--~~vi~p  159 (183)
T 3c85_A          101 LDTGHVKLVLLAMPHH-----------QGNQ----TALEQLQRRNY-KGQIAAIAEYPDQL-EGLLES--GV--DAAFNI  159 (183)
T ss_dssp             CSCCCCCEEEECCSSH-----------HHHH----HHHHHHHHTTC-CSEEEEEESSHHHH-HHHHHH--TC--SEEEEH
T ss_pred             cCCCCCCEEEEeCCCh-----------HHHH----HHHHHHHHHCC-CCEEEEEECCHHHH-HHHHHc--CC--CEEEch
Confidence              68899999975311           1232    33345556654 45566555543322 233333  22  344444


Q ss_pred             ehhhHHHHHHHHHHHcCCCCC
Q 022227          157 TRLDHNRALGQISEKLNVQVS  177 (300)
Q Consensus       157 t~ld~~R~~~~la~~l~v~~~  177 (300)
                      ...-..++...+.+.++.+..
T Consensus       160 ~~~~a~~l~~~~~~~~~~~~~  180 (183)
T 3c85_A          160 YSEAGSGFARHVCKQLEPQFT  180 (183)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHHHhcCCccc
Confidence            444445566666666665544

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.22  E-value=0.00049  Score=64.19  Aligned_cols=98  Identities=16%  Similarity=0.043  Sum_probs=57.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhc-ccCCCCCCeEEEEEe---cCCchhhhhhhhhhhh---hhccC-C-----cccE-EE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLD---IPPAAEALNGVKMELV---DAAFP-L-----LKGV-VA   71 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~-~~~~~~~~~~l~L~D---~~~~~~~l~g~~~dl~---~~~~~-~-----~~~v-~~   71 (300)
                      |||+|+| +|.+|..++..|... |.       +|.++|   .+  .++++.....-.   ..... .     ...+ ..
T Consensus         3 mkI~ViG-aG~~G~~~a~~La~~~G~-------~V~~~~~~~r~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   72 (404)
T 3c7a_A            3 VKVCVCG-GGNGAHTLSGLAASRDGV-------EVRVLTLFADE--AERWTKALGADELTVIVNEKDGTQTEVKSRPKVI   72 (404)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHTTSTTE-------EEEEECCSTTH--HHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEE
T ss_pred             ceEEEEC-CCHHHHHHHHHHHhCCCC-------EEEEEeCCCCc--HHHHHHHHhhccceeeeecCCCccceeeccceEE
Confidence            6999999 799999999998763 54       799999   43  233322100000   00000 0     1122 25


Q ss_pred             eCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEE
Q 022227           72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLV  129 (300)
Q Consensus        72 ~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv  129 (300)
                      +++..++++++|+||++.-..                ..+++++.+..+.+++..++.
T Consensus        73 ~~~~~~a~~~aD~Vilav~~~----------------~~~~v~~~l~~~l~~~~ivv~  114 (404)
T 3c7a_A           73 TKDPEIAISGADVVILTVPAF----------------AHEGYFQAMAPYVQDSALIVG  114 (404)
T ss_dssp             ESCHHHHHTTCSEEEECSCGG----------------GHHHHHHHHTTTCCTTCEEEE
T ss_pred             eCCHHHHhCCCCEEEEeCchH----------------HHHHHHHHHHhhCCCCcEEEE
Confidence            667778899999999984211                024566666666555553333

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=97.22  E-value=0.001  Score=58.06  Aligned_cols=145  Identities=17%  Similarity=0.202  Sum_probs=86.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh--------hhhhhhhhccCCcccEEEeCChh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG--------VKMELVDAAFPLLKGVVATTDAV   76 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g--------~~~dl~~~~~~~~~~v~~~~~~~   76 (300)
                      .+.+.||||++-||..++..|++.|.       .|++.|+++  +.++.        ...|+.+..     .+   ....
T Consensus        11 GK~alVTGas~GIG~aia~~la~~Ga-------~Vv~~~~~~--~~~~~~~~~~~~~~~~Dv~~~~-----~v---~~~~   73 (242)
T 4b79_A           11 GQQVLVTGGSSGIGAAIAMQFAELGA-------EVVALGLDA--DGVHAPRHPRIRREELDITDSQ-----RL---QRLF   73 (242)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESST--TSTTSCCCTTEEEEECCTTCHH-----HH---HHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHhhhhcCCeEEEEecCCCHH-----HH---HHHH
Confidence            46899999999999999999999885       799999864  33321        122332221     00   1234


Q ss_pred             hhcCCCcEEEEeCCCCCCC-CCcH---HHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCC
Q 022227           77 EACTGVNIAVMVGGFPRKE-GMER---KDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI  148 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~-g~~r---~dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~  148 (300)
                      +.+...|++|..||..+.. ..+.   ...+..|+...    +...+.+++.   ...+|++++-...         .+.
T Consensus        74 ~~~g~iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~---~G~IVnisS~~~~---------~~~  141 (242)
T 4b79_A           74 EALPRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQR---GGSILNIASMYST---------FGS  141 (242)
T ss_dssp             HHCSCCSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---CEEEEEECCGGGT---------SCC
T ss_pred             HhcCCCCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc---CCeEEEEeecccc---------CCC
Confidence            5577899999999986422 1222   23455565443    4444555443   3578888864321         122


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      |..-.|+.++---..+-+.+|.+++  +..|+
T Consensus       142 ~~~~~Y~asKaav~~ltr~lA~Ela--~~gIr  171 (242)
T 4b79_A          142 ADRPAYSASKGAIVQLTRSLACEYA--AERIR  171 (242)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhh--hcCeE
Confidence            3222345555555567777887775  44454

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.21  E-value=0.0011  Score=59.72  Aligned_cols=118  Identities=14%  Similarity=0.148  Sum_probs=66.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhh-h--hhhccCCcccEEEeCChhhhcCCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME-L--VDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~d-l--~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      |||+|+| +|.+|..++..|. .|.       +|.++++++  ++++....+ +  ..........+..   ..++.+++
T Consensus         3 mkI~IiG-aGa~G~~~a~~L~-~g~-------~V~~~~r~~--~~~~~l~~~G~~~~~~~~~~~~~~~~---~~~~~~~~   68 (307)
T 3ego_A            3 LKIGIIG-GGSVGLLCAYYLS-LYH-------DVTVVTRRQ--EQAAAIQSEGIRLYKGGEEFRADCSA---DTSINSDF   68 (307)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-TTS-------EEEEECSCH--HHHHHHHHHCEEEEETTEEEEECCEE---ESSCCSCC
T ss_pred             CEEEEEC-CCHHHHHHHHHHh-cCC-------ceEEEECCH--HHHHHHHhCCceEecCCCeecccccc---cccccCCC
Confidence            6999999 7999999999998 663       799999863  233221110 0  0000000001111   12456889


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE-Eeeehh
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRL  159 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i-~~~t~l  159 (300)
                      |+||++.    |+.            .+.++++.++... ++. +|.+.|-++..- .+.+   -+|.+++ ++.+..
T Consensus        69 D~vilav----K~~------------~~~~~l~~l~~~~-~~~-ivs~~nGi~~~e-~l~~---~~~~~~vl~g~~~~  124 (307)
T 3ego_A           69 DLLVVTV----KQH------------QLQSVFSSLERIG-KTN-ILFLQNGMGHIH-DLKD---WHVGHSIYVGIVEH  124 (307)
T ss_dssp             SEEEECC----CGG------------GHHHHHHHTTSSC-CCE-EEECCSSSHHHH-HHHT---CCCSCEEEEEEECC
T ss_pred             CEEEEEe----CHH------------HHHHHHHHhhcCC-CCe-EEEecCCccHHH-HHHH---hCCCCcEEEEEEee
Confidence            9999974    111            1234456666553 466 888889876432 2333   2466665 444443

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.21  E-value=0.0018  Score=50.91  Aligned_cols=38  Identities=18%  Similarity=0.217  Sum_probs=29.3

Q ss_pred             CCC-CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            1 MAK-EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         1 m~~-~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      |+. ++++|+|+| +|.+|+.++..|...|.       +++++|.++
T Consensus         1 m~~~~~~~v~I~G-~G~iG~~la~~L~~~g~-------~V~~id~~~   39 (141)
T 3llv_A            1 MTENGRYEYIVIG-SEAAGVGLVRELTAAGK-------KVLAVDKSK   39 (141)
T ss_dssp             -----CCSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEESCH
T ss_pred             CCCCCCCEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEECCH
Confidence            543 346899999 69999999999998775       699999863

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.20  E-value=0.00049  Score=60.05  Aligned_cols=67  Identities=12%  Similarity=0.172  Sum_probs=46.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ++|||+|+| +|.+|..++..|...+.       ++.++|+++  ++++.....+   .      +...++..++++++|
T Consensus         2 ~~m~i~iiG-~G~mG~~~a~~l~~~g~-------~v~~~~~~~--~~~~~~~~~~---g------~~~~~~~~~~~~~~D   62 (259)
T 2ahr_A            2 NAMKIGIIG-VGKMASAIIKGLKQTPH-------ELIISGSSL--ERSKEIAEQL---A------LPYAMSHQDLIDQVD   62 (259)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHTTSSC-------EEEEECSSH--HHHHHHHHHH---T------CCBCSSHHHHHHTCS
T ss_pred             CccEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEECCCH--HHHHHHHHHc---C------CEeeCCHHHHHhcCC
Confidence            347999999 79999999999887652       789999863  4443221111   1      112446777889999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +||++.
T Consensus        63 ~Vi~~v   68 (259)
T 2ahr_A           63 LVILGI   68 (259)
T ss_dssp             EEEECS
T ss_pred             EEEEEe
Confidence            999985

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=97.19  E-value=0.00043  Score=66.90  Aligned_cols=122  Identities=15%  Similarity=0.082  Sum_probs=70.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch-hhhhhhhhhhhhhccC---CcccEEEeCChhhhcC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-EALNGVKMELVDAAFP---LLKGVVATTDAVEACT   80 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~-~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a~~   80 (300)
                      ..+|.||||+|++|..++..|+..|.-      .+++++.+... +.++....++......   ...++.-..+..+.++
T Consensus       259 ~~~vLITGgtGgIG~~lA~~La~~G~~------~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~  332 (511)
T 2z5l_A          259 SGTVLITGGMGAIGRRLARRLAAEGAE------RLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVT  332 (511)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCS------EEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCc------EEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHh
Confidence            468999999999999999999887641      58888875311 1222222233221100   0001110112233343


Q ss_pred             --CCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCc
Q 022227           81 --GVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        81 --~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                        ..|+|||+||.....   ..+.   ...+..|+.....+.+.+.+..+.+ .+|++|+-
T Consensus       333 ~~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~-~~V~~SS~  392 (511)
T 2z5l_A          333 AYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLD-AFVLFSSV  392 (511)
T ss_dssp             HSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCC-CEEEEEEG
T ss_pred             cCCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCC-EEEEEeCH
Confidence              389999999976422   1222   3456778888888888776541223 56666653

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.19  E-value=0.00078  Score=52.58  Aligned_cols=37  Identities=24%  Similarity=0.324  Sum_probs=27.9

Q ss_pred             CCC-CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            1 MAK-EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         1 m~~-~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      |+. ++++|+|+| +|.+|+.++..|...|.       +++++|.+
T Consensus         1 m~~~~~~~v~I~G-~G~iG~~~a~~l~~~g~-------~v~~~d~~   38 (144)
T 2hmt_A            1 MGRIKNKQFAVIG-LGRFGGSIVKELHRMGH-------EVLAVDIN   38 (144)
T ss_dssp             -----CCSEEEEC-CSHHHHHHHHHHHHTTC-------CCEEEESC
T ss_pred             CCCCcCCcEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEeCC
Confidence            543 445799999 59999999999988764       58889985

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=97.19  E-value=0.0033  Score=59.37  Aligned_cols=75  Identities=16%  Similarity=0.200  Sum_probs=50.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC----------CcccEEEeCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----------LLKGVVATTD   74 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~----------~~~~v~~~~~   74 (300)
                      ..|..|+| +|++|..++..|+..|.       +|+.+|+++  ++.+.....-.....+          ...++..+++
T Consensus        11 ~~~~~ViG-lGyvGlp~A~~La~~G~-------~V~~~D~~~--~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd   80 (431)
T 3ojo_A           11 GSKLTVVG-LGYIGLPTSIMFAKHGV-------DVLGVDINQ--QTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTT   80 (431)
T ss_dssp             -CEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESS
T ss_pred             CCccEEEe-eCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCc
Confidence            36899999 89999999999998875       899999974  4443221100000000          0235666665


Q ss_pred             hhhhcCCCcEEEEeCCCCC
Q 022227           75 AVEACTGVNIAVMVGGFPR   93 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~   93 (300)
                          +++||+||++-+.|.
T Consensus        81 ----~~~aDvvii~VpTp~   95 (431)
T 3ojo_A           81 ----PEASDVFIIAVPTPN   95 (431)
T ss_dssp             ----CCCCSEEEECCCCCB
T ss_pred             ----hhhCCEEEEEeCCCc
Confidence                468999999877665

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.19  E-value=0.0012  Score=60.44  Aligned_cols=65  Identities=12%  Similarity=0.098  Sum_probs=44.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC----
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT----   80 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~----   80 (300)
                      .+||+||| .|.+|.+++..|...|.       +|.++|.++  +.++. +.++   .      +...++..++++    
T Consensus         8 ~~kIgIIG-~G~mG~slA~~L~~~G~-------~V~~~dr~~--~~~~~-a~~~---G------~~~~~~~~e~~~~a~~   67 (341)
T 3ktd_A            8 SRPVCILG-LGLIGGSLLRDLHAANH-------SVFGYNRSR--SGAKS-AVDE---G------FDVSADLEATLQRAAA   67 (341)
T ss_dssp             SSCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSCH--HHHHH-HHHT---T------CCEESCHHHHHHHHHH
T ss_pred             CCEEEEEe-ecHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHH-HHHc---C------CeeeCCHHHHHHhccc
Confidence            46999999 79999999999998774       699999863  33321 1111   1      122345666555    


Q ss_pred             CCcEEEEeC
Q 022227           81 GVNIAVMVG   89 (300)
Q Consensus        81 ~aDvVi~~a   89 (300)
                      ++|+||++.
T Consensus        68 ~aDlVilav   76 (341)
T 3ktd_A           68 EDALIVLAV   76 (341)
T ss_dssp             TTCEEEECS
T ss_pred             CCCEEEEeC
Confidence            579999974

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.17  E-value=0.00067  Score=60.37  Aligned_cols=80  Identities=10%  Similarity=0.115  Sum_probs=51.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEe--CChhhhcCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT--TDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~--~~~~~a~~~   81 (300)
                      +.+++.|+||+|.+|.+++..|+..|.       +|+++|++.  ++++..+.++.............+  .+..+++++
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~-------~V~i~~R~~--~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  188 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGA-------EVVLCGRKL--DKAQAAADSVNKRFKVNVTAAETADDASRAEAVKG  188 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHh
Confidence            457899999999999999999998874       688998863  455444434432110000011111  123566788


Q ss_pred             CcEEEEeCCCC
Q 022227           82 VNIAVMVGGFP   92 (300)
Q Consensus        82 aDvVi~~ag~~   92 (300)
                      +|+||+++|..
T Consensus       189 ~DvlVn~ag~g  199 (287)
T 1lu9_A          189 AHFVFTAGAIG  199 (287)
T ss_dssp             CSEEEECCCTT
T ss_pred             CCEEEECCCcc
Confidence            99999999753

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=97.15  E-value=0.0012  Score=59.32  Aligned_cols=153  Identities=13%  Similarity=0.102  Sum_probs=82.1

Q ss_pred             CCCcEEEEEcC--CChHHHHHHHHHHhcccCCCCCCeEEEEEecCC---------chhhhhhhhhhhhhhccCCcccEEE
Q 022227            3 KEPVRVLVTGA--AGQIGYALVPMIARGVMLGTDQPVILHMLDIPP---------AAEALNGVKMELVDAAFPLLKGVVA   71 (300)
Q Consensus         3 ~~~~kV~IiGA--aG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~---------~~~~l~g~~~dl~~~~~~~~~~v~~   71 (300)
                      ++.+++.||||  +|.||..++..|++.|.       +|++.|.++         +.++++.. .++..........+..
T Consensus         7 l~gk~~lVTGa~~s~GIG~aia~~la~~G~-------~Vv~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   78 (315)
T 2o2s_A            7 LRGQTAFVAGVADSHGYGWAIAKHLASAGA-------RVALGTWPPVLGLFQKSLQSGRLDED-RKLPDGSLIEFAGVYP   78 (315)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHTTTC-------EEEEEECHHHHHHHHHHHHHTTTHHH-HBCTTSCBCCCSCEEE
T ss_pred             CCCCEEEEeCCCCCCChHHHHHHHHHHCCC-------EEEEEecccccchhhhhhhhhhhhhh-hhhhcccccccccccc
Confidence            34568999998  79999999999998875       788887531         00111110 1111000000000000


Q ss_pred             -------------------------eCChhhh-------cCCCcEEEEeCCCCC---CC--CCcH---HHHHHhhHHHHH
Q 022227           72 -------------------------TTDAVEA-------CTGVNIAVMVGGFPR---KE--GMER---KDVMSKNVSIYK  111 (300)
Q Consensus        72 -------------------------~~~~~~a-------~~~aDvVi~~ag~~~---~~--g~~r---~dl~~~N~~i~~  111 (300)
                                               ..+..+.       +...|++|+.||...   .+  ..+.   ...+..|+....
T Consensus        79 ~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  158 (315)
T 2o2s_A           79 LDAAFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFV  158 (315)
T ss_dssp             CCTTCSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             ccccccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHH
Confidence                                     0112222       346899999998642   11  1222   345778888888


Q ss_pred             HHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCC-cEEeeehhhHHHHHHHHHHHc
Q 022227          112 AQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAK-NITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       112 ~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~-~i~~~t~ld~~R~~~~la~~l  172 (300)
                      .+.+.+..+-.+..++|++|+-...         .+.|.. ..|+.++.-...+.+.+|.++
T Consensus       159 ~l~~~~~~~m~~~g~Iv~isS~~~~---------~~~~~~~~~Y~asKaal~~l~~~la~el  211 (315)
T 2o2s_A          159 SLLQHFGPIMNEGGSAVTLSYLAAE---------RVVPGYGGGMSSAKAALESDTRTLAWEA  211 (315)
T ss_dssp             HHHHHHSTTEEEEEEEEEEEEGGGT---------SCCTTCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCEEEEEeccccc---------ccCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence            8887776542222467777754321         122322 134555555556666666665

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.13  E-value=0.0014  Score=58.89  Aligned_cols=64  Identities=17%  Similarity=0.240  Sum_probs=44.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      .||++|| .|.+|+.++..|+..|+       +|+.+|+++  ++.+.    +.+.      ......+..++++++|+|
T Consensus         6 ~kIgfIG-LG~MG~~mA~~L~~~G~-------~V~v~dr~~--~~~~~----l~~~------G~~~~~s~~e~~~~~dvv   65 (297)
T 4gbj_A            6 EKIAFLG-LGNLGTPIAEILLEAGY-------ELVVWNRTA--SKAEP----LTKL------GATVVENAIDAITPGGIV   65 (297)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEC---------CT----TTTT------TCEECSSGGGGCCTTCEE
T ss_pred             CcEEEEe-cHHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHH----HHHc------CCeEeCCHHHHHhcCCce
Confidence            5899999 89999999999999875       799999864  33331    2211      223445778899999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |.+-
T Consensus        66 i~~l   69 (297)
T 4gbj_A           66 FSVL   69 (297)
T ss_dssp             EECC
T ss_pred             eeec
Confidence            9873

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.12  E-value=0.0019  Score=58.00  Aligned_cols=65  Identities=23%  Similarity=0.445  Sum_probs=49.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      ++||.+|| .|.+|+.++..|+..|+       +++.+|+++  ++++.    +.+.      ..+...+..++++++|+
T Consensus         3 M~kIgfIG-lG~MG~~mA~~L~~~G~-------~v~v~dr~~--~~~~~----l~~~------Ga~~a~s~~e~~~~~dv   62 (300)
T 3obb_A            3 MKQIAFIG-LGHMGAPMATNLLKAGY-------LLNVFDLVQ--SAVDG----LVAA------GASAARSARDAVQGADV   62 (300)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSSH--HHHHH----HHHT------TCEECSSHHHHHTTCSE
T ss_pred             cCEEEEee-ehHHHHHHHHHHHhCCC-------eEEEEcCCH--HHHHH----HHHc------CCEEcCCHHHHHhcCCc
Confidence            35999999 99999999999998875       799999863  44432    2221      12344578889999999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      ||.+-
T Consensus        63 v~~~l   67 (300)
T 3obb_A           63 VISML   67 (300)
T ss_dssp             EEECC
T ss_pred             eeecC
Confidence            99873

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.11  E-value=0.00095  Score=58.22  Aligned_cols=65  Identities=12%  Similarity=0.138  Sum_probs=45.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+|+| +|.+|+.++..|...|.      .++.++|+++  ++++..    ....     .+...++..+++ ++|+|
T Consensus         1 m~i~iiG-~G~mG~~~a~~l~~~g~------~~v~~~~r~~--~~~~~~----~~~~-----g~~~~~~~~~~~-~~D~v   61 (263)
T 1yqg_A            1 MNVYFLG-GGNMAAAVAGGLVKQGG------YRIYIANRGA--EKRERL----EKEL-----GVETSATLPELH-SDDVL   61 (263)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHCS------CEEEEECSSH--HHHHHH----HHHT-----CCEEESSCCCCC-TTSEE
T ss_pred             CEEEEEC-chHHHHHHHHHHHHCCC------CeEEEECCCH--HHHHHH----HHhc-----CCEEeCCHHHHh-cCCEE
Confidence            4899999 79999999999987762      1789999863  444322    1110     123344566777 99999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++.
T Consensus        62 i~~v   65 (263)
T 1yqg_A           62 ILAV   65 (263)
T ss_dssp             EECS
T ss_pred             EEEe
Confidence            9984

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.11  E-value=0.0024  Score=58.34  Aligned_cols=65  Identities=14%  Similarity=0.108  Sum_probs=45.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .+||+||| +|.+|.+++..|...|+       +++++|.++.  +....+.   ..      .+... +..+++++||+
T Consensus        16 ~~~I~IIG-~G~mG~alA~~L~~~G~-------~V~~~~~~~~--~~~~~a~---~~------G~~~~-~~~e~~~~aDv   75 (338)
T 1np3_A           16 GKKVAIIG-YGSQGHAHACNLKDSGV-------DVTVGLRSGS--ATVAKAE---AH------GLKVA-DVKTAVAAADV   75 (338)
T ss_dssp             TSCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECCTTC--HHHHHHH---HT------TCEEE-CHHHHHHTCSE
T ss_pred             CCEEEEEC-chHHHHHHHHHHHHCcC-------EEEEEECChH--HHHHHHH---HC------CCEEc-cHHHHHhcCCE
Confidence            46899999 79999999999988764       5888988642  2111111   11      11233 66788999999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      ||++.
T Consensus        76 Vilav   80 (338)
T 1np3_A           76 VMILT   80 (338)
T ss_dssp             EEECS
T ss_pred             EEEeC
Confidence            99974

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=97.10  E-value=0.0014  Score=59.03  Aligned_cols=35  Identities=11%  Similarity=0.159  Sum_probs=29.4

Q ss_pred             CCCcEEEEEcC--CChHHHHHHHHHHhcccCCCCCCeEEEEEec
Q 022227            3 KEPVRVLVTGA--AGQIGYALVPMIARGVMLGTDQPVILHMLDI   44 (300)
Q Consensus         3 ~~~~kV~IiGA--aG~vG~~la~~L~~~~~~~~~~~~~l~L~D~   44 (300)
                      ++.+++.||||  ++.||..++..|++.|.       +|++.|+
T Consensus         7 l~~k~~lVTGa~~s~GIG~aia~~la~~G~-------~Vv~~~r   43 (319)
T 2ptg_A            7 LRGKTAFVAGVADSNGYGWAICKLLRAAGA-------RVLVGTW   43 (319)
T ss_dssp             CTTCEEEEECCCCTTSHHHHHHHHHHHTTC-------EEEEEEC
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHCCC-------EEEEEec
Confidence            34568999998  79999999999999875       6888874

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.08  E-value=0.00077  Score=57.43  Aligned_cols=66  Identities=15%  Similarity=0.126  Sum_probs=45.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +++||+|+| +|.+|..++..|...|.       ++.++|+++  ++++.    +.+.      .+... +..++++++|
T Consensus        27 ~~~~I~iiG-~G~~G~~la~~l~~~g~-------~V~~~~r~~--~~~~~----~~~~------g~~~~-~~~~~~~~~D   85 (215)
T 2vns_A           27 EAPKVGILG-SGDFARSLATRLVGSGF-------KVVVGSRNP--KRTAR----LFPS------AAQVT-FQEEAVSSPE   85 (215)
T ss_dssp             --CCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEESSH--HHHHH----HSBT------TSEEE-EHHHHTTSCS
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHH----HHHc------CCcee-cHHHHHhCCC
Confidence            347899999 89999999999988764       688899863  33321    2111      12222 5677899999


Q ss_pred             EEEEeCC
Q 022227           84 IAVMVGG   90 (300)
Q Consensus        84 vVi~~ag   90 (300)
                      +||++..
T Consensus        86 vVi~av~   92 (215)
T 2vns_A           86 VIFVAVF   92 (215)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9999853

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.03  E-value=0.00049  Score=61.13  Aligned_cols=79  Identities=20%  Similarity=0.207  Sum_probs=48.1

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEE-EEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC   79 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~-L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~   79 (300)
                      |.++++||+|+||+|.+|+.++..+....      ..+|+ .+|.++  +++.+  .|+..........+..++++.+.+
T Consensus         1 ~~~~~mkV~V~Ga~G~mG~~~~~~~~~~~------~~elva~~d~~~--~~~~g--~d~~~~~g~~~~~v~~~~dl~~~l   70 (273)
T 1dih_A            1 MHDANIRVAIAGAGGRMGRQLIQAALALE------GVQLGAALEREG--SSLLG--SDAGELAGAGKTGVTVQSSLDAVK   70 (273)
T ss_dssp             -CCCBEEEEETTTTSHHHHHHHHHHHHST------TEECCCEECCTT--CTTCS--CCTTCSSSSSCCSCCEESCSTTTT
T ss_pred             CCCCCcEEEEECCCCHHHHHHHHHHHhCC------CCEEEEEEecCc--hhhhh--hhHHHHcCCCcCCceecCCHHHHh
Confidence            78888999999977999999998877532      12554 778753  12111  122111100011334456777788


Q ss_pred             CCCcEEEEeC
Q 022227           80 TGVNIAVMVG   89 (300)
Q Consensus        80 ~~aDvVi~~a   89 (300)
                      +++|+||...
T Consensus        71 ~~~DvVIDft   80 (273)
T 1dih_A           71 DDFDVFIDFT   80 (273)
T ss_dssp             TSCSEEEECS
T ss_pred             cCCCEEEEcC
Confidence            8999999543

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.01  E-value=0.0037  Score=57.08  Aligned_cols=103  Identities=17%  Similarity=0.290  Sum_probs=56.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhh-hhhhhccCCcccEEEeC--Chhhhc
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM-ELVDAAFPLLKGVVATT--DAVEAC   79 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~-dl~~~~~~~~~~v~~~~--~~~~a~   79 (300)
                      +.++||+|+||+|.+|..++..|.....      +++..+...+. .+-.|... |+ +..+....++.+..  +. +++
T Consensus         2 ~~M~kv~IvGatG~vG~~l~~~L~~~p~------~el~~l~s~~~-~~saGk~~~~~-~p~~~~~~~~~v~~~~~~-~~~   72 (337)
T 3dr3_A            2 NAMLNTLIVGASGYAGAELVTYVNRHPH------MNITALTVSAQ-SNDAGKLISDL-HPQLKGIVELPLQPMSDI-SEF   72 (337)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHCTT------EEEEEEEEETT-CTTTTSBHHHH-CGGGTTTCCCBEEEESSG-GGT
T ss_pred             CCceEEEEECCCChHHHHHHHHHHhCCC------CcEEEEEecCc-hhhcCCchHHh-CccccCccceeEeccCCH-HHH
Confidence            3457999999999999999998886432      36766654320 00122211 11 11111001222222  33 446


Q ss_pred             -CCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCc
Q 022227           80 -TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        80 -~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                       +++|+||.+.+.                ...+++++.+.+.   ++++|-.|.+
T Consensus        73 ~~~~Dvvf~a~p~----------------~~s~~~~~~~~~~---g~~vIDlSa~  108 (337)
T 3dr3_A           73 SPGVDVVFLATAH----------------EVSHDLAPQFLEA---GCVVFDLSGA  108 (337)
T ss_dssp             CTTCSEEEECSCH----------------HHHHHHHHHHHHT---TCEEEECSST
T ss_pred             hcCCCEEEECCCh----------------HHHHHHHHHHHHC---CCEEEEcCCc
Confidence             899999998531                2234555555554   4667777766

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=96.98  E-value=0.00079  Score=59.81  Aligned_cols=64  Identities=17%  Similarity=0.267  Sum_probs=46.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+|+| +|.+|..++..|...|.       ++.++|+++  ++++.    +...      .+...++..++++++|+|
T Consensus         1 m~i~iiG-~G~mG~~~a~~l~~~g~-------~V~~~~~~~--~~~~~----~~~~------g~~~~~~~~~~~~~~Dvv   60 (296)
T 2gf2_A            1 MPVGFIG-LGNMGNPMAKNLMKHGY-------PLIIYDVFP--DACKE----FQDA------GEQVVSSPADVAEKADRI   60 (296)
T ss_dssp             CCEEEEC-CSTTHHHHHHHHHHTTC-------CEEEECSST--HHHHH----HHTT------TCEECSSHHHHHHHCSEE
T ss_pred             CeEEEEe-ccHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHH----HHHc------CCeecCCHHHHHhcCCEE
Confidence            4899999 79999999999988764       688999864  33331    2111      233455777888899999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++.
T Consensus        61 i~~v   64 (296)
T 2gf2_A           61 ITML   64 (296)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            9974

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.94  E-value=0.0031  Score=57.78  Aligned_cols=75  Identities=11%  Similarity=0.076  Sum_probs=41.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +++||+|+||+|.+|..++..|...+.      ++++.+-...+    .+...+-.+..+.....+... +.. +++++|
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~------~elv~v~s~~~----~g~~~~~~~~~~~g~~~~~~~-~~~-~~~~vD   70 (345)
T 2ozp_A            3 GKKTLSIVGASGYAGGEFLRLALSHPY------LEVKQVTSRRF----AGEPVHFVHPNLRGRTNLKFV-PPE-KLEPAD   70 (345)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHTCTT------EEEEEEBCSTT----TTSBGGGTCGGGTTTCCCBCB-CGG-GCCCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHcCCC------cEEEEEECchh----hCchhHHhCchhcCccccccc-chh-HhcCCC
Confidence            357999999999999999988875432      36666533221    111111111111100122222 222 478999


Q ss_pred             EEEEeCC
Q 022227           84 IAVMVGG   90 (300)
Q Consensus        84 vVi~~ag   90 (300)
                      +||++.+
T Consensus        71 vV~~a~g   77 (345)
T 2ozp_A           71 ILVLALP   77 (345)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9999864

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=96.89  E-value=0.0048  Score=55.82  Aligned_cols=72  Identities=10%  Similarity=0.046  Sum_probs=42.9

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEE-EEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVIL-HMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC   79 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l-~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~   79 (300)
                      |+|+++||+|+| +|.+|...+..|...+-      .++ .++|.++  ++++..+..+   .   ..  ...++.++.+
T Consensus         1 M~m~~~rigiiG-~G~ig~~~~~~l~~~~~------~~~~av~d~~~--~~~~~~a~~~---~---~~--~~~~~~~~ll   63 (329)
T 3evn_A            1 MSLSKVRYGVVS-TAKVAPRFIEGVRLAGN------GEVVAVSSRTL--ESAQAFANKY---H---LP--KAYDKLEDML   63 (329)
T ss_dssp             ----CEEEEEEB-CCTTHHHHHHHHHHHCS------EEEEEEECSCS--STTCC---CC---C---CS--CEESCHHHHH
T ss_pred             CCCCceEEEEEe-chHHHHHHHHHHHhCCC------cEEEEEEcCCH--HHHHHHHHHc---C---CC--cccCCHHHHh
Confidence            788889999999 79999998888775431      244 4678764  3333221111   0   00  1345777777


Q ss_pred             C--CCcEEEEeC
Q 022227           80 T--GVNIAVMVG   89 (300)
Q Consensus        80 ~--~aDvVi~~a   89 (300)
                      +  ++|+|+++.
T Consensus        64 ~~~~~D~V~i~t   75 (329)
T 3evn_A           64 ADESIDVIYVAT   75 (329)
T ss_dssp             TCTTCCEEEECS
T ss_pred             cCCCCCEEEECC
Confidence            7  789999863

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=96.88  E-value=0.005  Score=56.85  Aligned_cols=72  Identities=22%  Similarity=0.397  Sum_probs=44.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      ++||+|+||+|++|..++..|.+.+.    ...++.++....+    .|....+..      ..+.+..-..++++++|+
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~----p~~el~~~as~~s----aG~~~~~~~------~~~~~~~~~~~~~~~~Dv   67 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTL----PIDKIRYLASARS----AGKSLKFKD------QDITIEETTETAFEGVDI   67 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCC----CEEEEEEEECTTT----TTCEEEETT------EEEEEEECCTTTTTTCSE
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCC----CcEEEEEEEcccc----CCCcceecC------CCceEeeCCHHHhcCCCE
Confidence            47999999999999999988776532    1137777765322    222222211      122232222345889999


Q ss_pred             EEEeCC
Q 022227           85 AVMVGG   90 (300)
Q Consensus        85 Vi~~ag   90 (300)
                      ||.+.+
T Consensus        68 vf~a~~   73 (366)
T 3pwk_A           68 ALFSAG   73 (366)
T ss_dssp             EEECSC
T ss_pred             EEECCC
Confidence            999864

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=96.84  E-value=0.00053  Score=61.27  Aligned_cols=98  Identities=10%  Similarity=0.168  Sum_probs=58.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc-CCCcE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC-TGVNI   84 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~-~~aDv   84 (300)
                      |||+|+| +|.+|..++..|...|.       +|.++++++  +.++     +..........  ++.+..+++ +++|+
T Consensus         3 mkI~iiG-aGa~G~~~a~~L~~~g~-------~V~~~~r~~--~~~~-----~~~~~g~~~~~--~~~~~~~~~~~~~D~   65 (294)
T 3g17_A            3 LSVAIIG-PGAVGTTIAYELQQSLP-------HTTLIGRHA--KTIT-----YYTVPHAPAQD--IVVKGYEDVTNTFDV   65 (294)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHHHHCT-------TCEEEESSC--EEEE-----EESSTTSCCEE--EEEEEGGGCCSCEEE
T ss_pred             cEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEEecc--CcEE-----EEecCCeeccc--eecCchHhcCCCCCE
Confidence            6899999 79999999999988763       588898863  2222     11110011112  222444555 89999


Q ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhh
Q 022227           85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT  136 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~  136 (300)
                      ||++-    |+.            .+.++++.++.+-+++..+|.+.|-.+.
T Consensus        66 vilav----k~~------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~  101 (294)
T 3g17_A           66 IIIAV----KTH------------QLDAVIPHLTYLAHEDTLIILAQNGYGQ  101 (294)
T ss_dssp             EEECS----CGG------------GHHHHGGGHHHHEEEEEEEEECCSSCCC
T ss_pred             EEEeC----Ccc------------CHHHHHHHHHHhhCCCCEEEEeccCccc
Confidence            99973    111            1223444444443345667888888754

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=96.82  E-value=0.0019  Score=56.33  Aligned_cols=64  Identities=11%  Similarity=0.087  Sum_probs=43.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+||| +|.+|..++..|...|.       +|.++|...+.+.++    .+....      +.  ++..++++++|+|
T Consensus         1 M~I~iIG-~G~mG~~la~~l~~~g~-------~V~~~~~~~~~~~~~----~~~~~g------~~--~~~~~~~~~aDvv   60 (264)
T 1i36_A            1 LRVGFIG-FGEVAQTLASRLRSRGV-------EVVTSLEGRSPSTIE----RARTVG------VT--ETSEEDVYSCPVV   60 (264)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHHTTC-------EEEECCTTCCHHHHH----HHHHHT------CE--ECCHHHHHTSSEE
T ss_pred             CeEEEEe-chHHHHHHHHHHHHCCC-------eEEEeCCccCHHHHH----HHHHCC------Cc--CCHHHHHhcCCEE
Confidence            4899999 79999999999988764       677877632223222    122111      11  3566778999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++.
T Consensus        61 i~~v   64 (264)
T 1i36_A           61 ISAV   64 (264)
T ss_dssp             EECS
T ss_pred             EEEC
Confidence            9984

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=96.77  E-value=0.0049  Score=56.60  Aligned_cols=35  Identities=23%  Similarity=0.411  Sum_probs=26.1

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEE
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML   42 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~   42 (300)
                      -++++||+|+||+|.+|..++..|....      .++++.+
T Consensus         1 m~~~~kV~IiGAtG~iG~~llr~L~~~p------~~elvai   35 (350)
T 2ep5_A            1 MADKIKVSLLGSTGMVGQKMVKMLAKHP------YLELVKV   35 (350)
T ss_dssp             -CCCEEEEEESCSSHHHHHHHHHHTTCS------SEEEEEE
T ss_pred             CCCCcEEEEECcCCHHHHHHHHHHHhCC------CcEEEEE
Confidence            0345899999999999999998776542      2367666

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.74  E-value=0.002  Score=61.29  Aligned_cols=77  Identities=9%  Similarity=0.127  Sum_probs=46.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .++|+|+| +|++|++++..|++.|.       ++++.|++.  ++++..+..+.... ....++.-..+..++++++|+
T Consensus         3 ~k~VlViG-aG~iG~~ia~~L~~~G~-------~V~v~~R~~--~~a~~la~~~~~~~-~~~~Dv~d~~~l~~~l~~~Dv   71 (450)
T 1ff9_A            3 TKSVLMLG-SGFVTRPTLDVLTDSGI-------KVTVACRTL--ESAKKLSAGVQHST-PISLDVNDDAALDAEVAKHDL   71 (450)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHTTTC-------EEEEEESSH--HHHHHTTTTCTTEE-EEECCTTCHHHHHHHHTTSSE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCcC-------EEEEEECCH--HHHHHHHHhcCCce-EEEeecCCHHHHHHHHcCCcE
Confidence            46899999 79999999999987653       789999863  44332221111000 000000000133466789999


Q ss_pred             EEEeCCCC
Q 022227           85 AVMVGGFP   92 (300)
Q Consensus        85 Vi~~ag~~   92 (300)
                      ||++++..
T Consensus        72 VIn~a~~~   79 (450)
T 1ff9_A           72 VISLIPYT   79 (450)
T ss_dssp             EEECCC--
T ss_pred             EEECCccc
Confidence            99998753

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.74  E-value=0.0049  Score=57.89  Aligned_cols=139  Identities=12%  Similarity=0.122  Sum_probs=75.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-cccEEEeCChhhh-cCCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEA-CTGV   82 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-~~~v~~~~~~~~a-~~~a   82 (300)
                      .++|.|+| .|.+|+.++..|...|.       +++++|.++  ++++.    +.....+. ..+.+-...+.++ +++|
T Consensus         4 ~~~viIiG-~Gr~G~~va~~L~~~g~-------~vvvId~d~--~~v~~----~~~~g~~vi~GDat~~~~L~~agi~~A   69 (413)
T 3l9w_A            4 GMRVIIAG-FGRFGQITGRLLLSSGV-------KMVVLDHDP--DHIET----LRKFGMKVFYGDATRMDLLESAGAAKA   69 (413)
T ss_dssp             CCSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEECCH--HHHHH----HHHTTCCCEESCTTCHHHHHHTTTTTC
T ss_pred             CCeEEEEC-CCHHHHHHHHHHHHCCC-------CEEEEECCH--HHHHH----HHhCCCeEEEcCCCCHHHHHhcCCCcc
Confidence            46899999 79999999999998764       699999874  44332    11111110 0000000012233 7899


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC-chhhHHHHHHHHCCCCCCCcEEeeehhhH
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN-PANTNALILKEFAPSIPAKNITCLTRLDH  161 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN-P~~~~~~~~~~~~~~~p~~~i~~~t~ld~  161 (300)
                      |+||++.+.           -..|    ..++..+++..| +.++|+-++ +...  ..+.+.  |.  ..+..-+..-+
T Consensus        70 ~~viv~~~~-----------~~~n----~~i~~~ar~~~p-~~~Iiara~~~~~~--~~L~~~--Ga--d~Vi~~~~~~a  127 (413)
T 3l9w_A           70 EVLINAIDD-----------PQTN----LQLTEMVKEHFP-HLQIIARARDVDHY--IRLRQA--GV--EKPERETFEGA  127 (413)
T ss_dssp             SEEEECCSS-----------HHHH----HHHHHHHHHHCT-TCEEEEEESSHHHH--HHHHHT--TC--SSCEETTHHHH
T ss_pred             CEEEECCCC-----------hHHH----HHHHHHHHHhCC-CCeEEEEECCHHHH--HHHHHC--CC--CEEECccHHHH
Confidence            999997421           1223    345556666765 555666554 4332  222332  32  23333344444


Q ss_pred             HHHHHHHHHHcCCCCCCe
Q 022227          162 NRALGQISEKLNVQVSDV  179 (300)
Q Consensus       162 ~R~~~~la~~l~v~~~~V  179 (300)
                      .++...+-..+|+++..+
T Consensus       128 ~~la~~~L~~lg~~~~~~  145 (413)
T 3l9w_A          128 LKTGRLALESLGLGPYEA  145 (413)
T ss_dssp             HHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHH
Confidence            455555555666665443

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=96.69  E-value=0.004  Score=57.40  Aligned_cols=35  Identities=20%  Similarity=0.323  Sum_probs=26.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEec
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI   44 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~   44 (300)
                      +++||+|+||+|++|..+...|.....      +++.++..
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~------~el~~l~S   40 (359)
T 4dpk_A            6 RTLKAAILGATGLVGIEYVRMLSNHPY------IKPAYLAG   40 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSS------EEEEEEEE
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCC------ceEEEEEC
Confidence            357999999999999999987665432      37777754

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=96.69  E-value=0.004  Score=57.40  Aligned_cols=35  Identities=20%  Similarity=0.323  Sum_probs=26.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEec
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI   44 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~   44 (300)
                      +++||+|+||+|++|..+...|.....      +++.++..
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~------~el~~l~S   40 (359)
T 4dpl_A            6 RTLKAAILGATGLVGIEYVRMLSNHPY------IKPAYLAG   40 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSS------EEEEEEEE
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCC------ceEEEEEC
Confidence            357999999999999999987665432      37777754

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=96.69  E-value=0.0034  Score=60.43  Aligned_cols=119  Identities=13%  Similarity=0.113  Sum_probs=70.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC-chhhhhhhhhhhhhhccC---CcccEEEeCChhhhcC-
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-AAEALNGVKMELVDAAFP---LLKGVVATTDAVEACT-   80 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~-~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a~~-   80 (300)
                      .++.||||+|.||..++..|++.|.-      .++|.+... +.+.++....++......   ...++.-..+..+.++ 
T Consensus       240 ~~vLITGgsgGIG~alA~~La~~Ga~------~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~  313 (496)
T 3mje_A          240 GSVLVTGGTGGIGGRVARRLAEQGAA------HLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAE  313 (496)
T ss_dssp             SEEEEETCSSHHHHHHHHHHHHTTCS------EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred             CEEEEECCCCchHHHHHHHHHHCCCc------EEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence            68999999999999999999987741      578887742 112222222233221100   0000000001122222 


Q ss_pred             -----CCcEEEEeCCCC-CCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           81 -----GVNIAVMVGGFP-RKE---GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        81 -----~aDvVi~~ag~~-~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                           ..|+||++||+. ...   ..+.   ...+..|+.....+.+.+.+... + .||++|+
T Consensus       314 i~~~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~-~-~iV~~SS  375 (496)
T 3mje_A          314 LPEDAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDL-D-AFVLFSS  375 (496)
T ss_dssp             CCTTSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCC-S-EEEEEEE
T ss_pred             HHHhCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCC-C-EEEEEeC
Confidence                 479999999986 221   2232   34678899999999998887743 4 5777765

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=96.68  E-value=0.0056  Score=55.99  Aligned_cols=35  Identities=37%  Similarity=0.571  Sum_probs=26.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEe
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLD   43 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D   43 (300)
                      ++||+|+||+|.+|..++..|.+++.    ..++++++.
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~----~~~elv~i~   40 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDF----PLHRLHLLA   40 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTC----CCSCEEEEE
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCC----CcEEEEEEe
Confidence            47999999999999999998886532    112566653

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.67  E-value=0.0063  Score=51.53  Aligned_cols=33  Identities=12%  Similarity=0.243  Sum_probs=28.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      |||+|+| +|.+|+.++..|...|.       +++++|.++
T Consensus         1 M~iiIiG-~G~~G~~la~~L~~~g~-------~v~vid~~~   33 (218)
T 3l4b_C            1 MKVIIIG-GETTAYYLARSMLSRKY-------GVVIINKDR   33 (218)
T ss_dssp             CCEEEEC-CHHHHHHHHHHHHHTTC-------CEEEEESCH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEECCH
Confidence            5899999 69999999999998764       699999863

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=96.64  E-value=0.0058  Score=55.06  Aligned_cols=70  Identities=14%  Similarity=0.207  Sum_probs=49.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~-~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      ..++|+|+| +|.+|..++..|... ++ .     ++.++|+++  ++++..+.++..       ++...++..++++++
T Consensus       134 ~~~~igiIG-~G~~g~~~a~~l~~~~g~-~-----~V~v~dr~~--~~~~~l~~~~~~-------~~~~~~~~~e~v~~a  197 (312)
T 2i99_A          134 SSEVLCILG-AGVQAYSHYEIFTEQFSF-K-----EVRIWNRTK--ENAEKFADTVQG-------EVRVCSSVQEAVAGA  197 (312)
T ss_dssp             TCCEEEEEC-CSHHHHHHHHHHHHHCCC-S-----EEEEECSSH--HHHHHHHHHSSS-------CCEECSSHHHHHTTC
T ss_pred             CCcEEEEEC-CcHHHHHHHHHHHHhCCC-c-----EEEEEcCCH--HHHHHHHHHhhC-------CeEEeCCHHHHHhcC
Confidence            467999999 799999999988764 42 1     789999863  444433222211       234456788889999


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |+||++-
T Consensus       198 DiVi~at  204 (312)
T 2i99_A          198 DVIITVT  204 (312)
T ss_dssp             SEEEECC
T ss_pred             CEEEEEe
Confidence            9999874

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=96.61  E-value=0.0052  Score=56.80  Aligned_cols=71  Identities=18%  Similarity=0.224  Sum_probs=40.5

Q ss_pred             cEEEEEcCCChHHHHHHH-HHHhcccCCCCCCeEEEEEecCCchhhhhhhhhh-hhhhccCCcccEEEeCChhhhcCCCc
Q 022227            6 VRVLVTGAAGQIGYALVP-MIARGVMLGTDQPVILHMLDIPPAAEALNGVKME-LVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~-~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~d-l~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +||+|+||+|.+|..++. .|.+.++    ..++++++..+.     .|.... +...    ...+.-..+ .+.++++|
T Consensus         2 ~kVaIvGAtG~vG~~llr~ll~~~~~----~~v~i~~~~~~s-----~G~~v~~~~g~----~i~~~~~~~-~~~~~~~D   67 (367)
T 1t4b_A            2 QNVGFIGWRGMVGSVLMQRMVEERDF----DAIRPVFFSTSQ-----LGQAAPSFGGT----TGTLQDAFD-LEALKALD   67 (367)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGG----GGSEEEEEESSS-----TTSBCCGGGTC----CCBCEETTC-HHHHHTCS
T ss_pred             cEEEEECCCCHHHHHHHHHHHhcCCC----CeEEEEEEEeCC-----CCCCccccCCC----ceEEEecCC-hHHhcCCC
Confidence            699999999999999999 4444432    113777775531     122111 1100    011111112 34478999


Q ss_pred             EEEEeCC
Q 022227           84 IAVMVGG   90 (300)
Q Consensus        84 vVi~~ag   90 (300)
                      +||.+.|
T Consensus        68 vVf~a~g   74 (367)
T 1t4b_A           68 IIVTCQG   74 (367)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9999864

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=96.58  E-value=0.015  Score=57.31  Aligned_cols=123  Identities=20%  Similarity=0.217  Sum_probs=68.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC-------chhhhhhhhhhhhhhccCCcccEEEeCC--
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-------AAEALNGVKMELVDAAFPLLKGVVATTD--   74 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~-------~~~~l~g~~~dl~~~~~~~~~~v~~~~~--   74 (300)
                      +.+.+.||||++-+|..++..|+..|.       .|++.|++.       +.+.++....++..........+.-.++  
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga-------~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~   79 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGA-------KVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGD   79 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-------EEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHH
Confidence            446789999999999999999999885       788888753       1123332223332211000000000001  


Q ss_pred             -----hhhhcCCCcEEEEeCCCCCCC---CCcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           75 -----AVEACTGVNIAVMVGGFPRKE---GMERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        75 -----~~~a~~~aDvVi~~ag~~~~~---g~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                           ..+.+-..|++|..||..+..   .++..   ..+..|+.    .++...+.+++..  ...||++|+...
T Consensus        80 ~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~--~G~IVnisS~ag  153 (604)
T 2et6_A           80 KIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQK--YGRIVNTSSPAG  153 (604)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHH
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECCHHH
Confidence                 123345789999999975421   23332   34556654    4455566665543  357888886543

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.58  E-value=0.0047  Score=54.70  Aligned_cols=76  Identities=18%  Similarity=0.253  Sum_probs=47.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEE-EEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~-L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      |+++||+|+||+|.+|+.++..+.+..      ..+|+ .+|.+..  ...+  .|+.+... ....+.+++++.+.+++
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~------~~eLv~~~d~~~~--~~~G--~d~gel~g-~~~gv~v~~dl~~ll~~   73 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAP------DATLVGALDRTGS--PQLG--QDAGAFLG-KQTGVALTDDIERVCAE   73 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCT------TEEEEEEBCCTTC--TTTT--SBTTTTTT-CCCSCBCBCCHHHHHHH
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCC------CCEEEEEEEecCc--cccc--ccHHHHhC-CCCCceecCCHHHHhcC
Confidence            446899999999999999998887643      12544 4676531  1112  12221110 11144556788888889


Q ss_pred             CcEEEEeC
Q 022227           82 VNIAVMVG   89 (300)
Q Consensus        82 aDvVi~~a   89 (300)
                      +|+||...
T Consensus        74 ~DVVIDfT   81 (272)
T 4f3y_A           74 ADYLIDFT   81 (272)
T ss_dssp             CSEEEECS
T ss_pred             CCEEEEcC
Confidence            99998864

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=96.57  E-value=0.0091  Score=55.43  Aligned_cols=27  Identities=19%  Similarity=0.354  Sum_probs=22.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcc
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGV   29 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~   29 (300)
                      |+++||+|+||+|++|..+...|.+..
T Consensus        17 M~~~kVaIvGAtG~vG~ell~lL~~hp   43 (381)
T 3hsk_A           17 MSVKKAGVLGATGSVGQRFILLLSKHP   43 (381)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCS
T ss_pred             CCccEEEEECCCChHHHHHHHHHHcCC
Confidence            455799999999999999998776643

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=96.56  E-value=0.012  Score=54.47  Aligned_cols=71  Identities=17%  Similarity=0.213  Sum_probs=42.4

Q ss_pred             cEEEEEcCCChHHHHHHH-HHHhcccCCCCCCeEEEEEecCCchhhhhhhh-hhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            6 VRVLVTGAAGQIGYALVP-MIARGVMLGTDQPVILHMLDIPPAAEALNGVK-MELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~-~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~-~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +||+|+||+|++|.-+.. .|.+....    ..++.++....     .|.. .++...    ...+.-.++ .+.++++|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~----~~~l~~~ss~~-----aG~~~~~~~~~----~~~~~~~~~-~~~~~~~D   66 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFD----LIEPVFFSTSQ-----IGVPAPNFGKD----AGMLHDAFD-IESLKQLD   66 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGG----GSEEEEEESSS-----TTSBCCCSSSC----CCBCEETTC-HHHHTTCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCC----ceEEEEEeccc-----cCcCHHHhCCC----ceEEEecCC-hhHhccCC
Confidence            589999999999999998 66665431    13777775432     2221 122111    011111112 35589999


Q ss_pred             EEEEeCC
Q 022227           84 IAVMVGG   90 (300)
Q Consensus        84 vVi~~ag   90 (300)
                      +||.+.+
T Consensus        67 vvf~a~~   73 (370)
T 3pzr_A           67 AVITCQG   73 (370)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9999864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.54  E-value=0.011  Score=46.54  Aligned_cols=33  Identities=18%  Similarity=0.290  Sum_probs=28.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      .+|+|+| .|.+|+.++..|...|.       +++++|.++
T Consensus         8 ~~viIiG-~G~~G~~la~~L~~~g~-------~v~vid~~~   40 (140)
T 3fwz_A            8 NHALLVG-YGRVGSLLGEKLLASDI-------PLVVIETSR   40 (140)
T ss_dssp             SCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEESCH
T ss_pred             CCEEEEC-cCHHHHHHHHHHHHCCC-------CEEEEECCH
Confidence            5899999 79999999999998765       699999864

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=96.54  E-value=0.0028  Score=57.43  Aligned_cols=72  Identities=19%  Similarity=0.222  Sum_probs=45.6

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEE-EEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC   79 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~-L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~   79 (300)
                      |+|+++||+||| +|.+|...+..|....      ..+++ ++|.++  ++++..+..+. .  +     ...++..+.+
T Consensus         1 M~m~~~~igiiG-~G~~g~~~~~~l~~~~------~~~l~av~d~~~--~~~~~~~~~~~-~--~-----~~~~~~~~ll   63 (330)
T 3e9m_A            1 MSLDKIRYGIMS-TAQIVPRFVAGLRESA------QAEVRGIASRRL--ENAQKMAKELA-I--P-----VAYGSYEELC   63 (330)
T ss_dssp             --CCCEEEEECS-CCTTHHHHHHHHHHSS------SEEEEEEBCSSS--HHHHHHHHHTT-C--C-----CCBSSHHHHH
T ss_pred             CCCCeEEEEEEC-chHHHHHHHHHHHhCC------CcEEEEEEeCCH--HHHHHHHHHcC-C--C-----ceeCCHHHHh
Confidence            788889999999 7999999998887642      12554 778764  44432222111 0  0     1235677777


Q ss_pred             C--CCcEEEEeC
Q 022227           80 T--GVNIAVMVG   89 (300)
Q Consensus        80 ~--~aDvVi~~a   89 (300)
                      +  ++|+|+++.
T Consensus        64 ~~~~~D~V~i~t   75 (330)
T 3e9m_A           64 KDETIDIIYIPT   75 (330)
T ss_dssp             HCTTCSEEEECC
T ss_pred             cCCCCCEEEEcC
Confidence            6  799999864

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=96.53  E-value=0.0055  Score=56.81  Aligned_cols=73  Identities=15%  Similarity=0.225  Sum_probs=43.4

Q ss_pred             CCcEEEEEcCCChHHHHHHH-HHHhcccCCCCCCeEEEEEecCCchhhhhhhh-hhhhhhccCCcccEEEeCChhhhcCC
Q 022227            4 EPVRVLVTGAAGQIGYALVP-MIARGVMLGTDQPVILHMLDIPPAAEALNGVK-MELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~-~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~-~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      .++||+|+||+|++|.-++. .|.+....    .+++.++....     .|.. .++....    ..+.-.++ .+++++
T Consensus         3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~----~~~l~~~ss~~-----aG~~~~~~~~~~----~~v~~~~~-~~~~~~   68 (377)
T 3uw3_A            3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFD----LIEPVFFSTSN-----AGGKAPSFAKNE----TTLKDATS-IDDLKK   68 (377)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTGGG----GSEEEEEESSC-----TTSBCCTTCCSC----CBCEETTC-HHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCC----ceEEEEEechh-----cCCCHHHcCCCc----eEEEeCCC-hhHhcC
Confidence            35799999999999999998 66655431    13777775431     1221 1221110    11111112 355789


Q ss_pred             CcEEEEeCC
Q 022227           82 VNIAVMVGG   90 (300)
Q Consensus        82 aDvVi~~ag   90 (300)
                      +|+||.+.+
T Consensus        69 vDvvf~a~~   77 (377)
T 3uw3_A           69 CDVIITCQG   77 (377)
T ss_dssp             CSEEEECSC
T ss_pred             CCEEEECCC
Confidence            999999864

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=96.51  E-value=0.0039  Score=60.37  Aligned_cols=124  Identities=17%  Similarity=0.115  Sum_probs=70.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEE-ecCCc-----------hhhhhhhhhhhhhhccC---CcccE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPA-----------AEALNGVKMELVDAAFP---LLKGV   69 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~-D~~~~-----------~~~l~g~~~dl~~~~~~---~~~~v   69 (300)
                      ...+.||||+|.||..++..|+..|.-      .++|. +++..           .+.++....++......   ...++
T Consensus       251 ~~~vLITGgsgGIG~~lA~~La~~G~~------~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv  324 (525)
T 3qp9_A          251 DGTVLVTGAEEPAAAEAARRLARDGAG------HLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDL  324 (525)
T ss_dssp             TSEEEESSTTSHHHHHHHHHHHHHTCC------EEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCT
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCCC------EEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCC
Confidence            357999999999999999999988741      47777 76531           12222222333221100   00000


Q ss_pred             EEeCChhhhc------CCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcCC---CeEEEEecCch
Q 022227           70 VATTDAVEAC------TGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAAP---NCKVLVVANPA  134 (300)
Q Consensus        70 ~~~~~~~~a~------~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~~---~~~viv~sNP~  134 (300)
                      .-..+..+.+      ...|+|||+||+....   ..+.   ...+..|+.....+.+.+.....+   ...+|++|+-.
T Consensus       325 td~~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a  404 (525)
T 3qp9_A          325 TDAEAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVA  404 (525)
T ss_dssp             TSHHHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGG
T ss_pred             CCHHHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHH
Confidence            0001122222      3469999999986422   2222   345778998888888888776411   13577777544

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=96.50  E-value=0.013  Score=53.54  Aligned_cols=71  Identities=15%  Similarity=0.349  Sum_probs=44.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||+|+||+|.+|.-+...|.... |.   ..++.++....+    .|....+..      ..+.+..-..++++++|+|
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~-fp---~~el~~~~s~~~----aG~~~~~~~------~~~~~~~~~~~~~~~~Dvv   67 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERD-FP---ASAVRFFASARS----QGRKLAFRG------QEIEVEDAETADPSGLDIA   67 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTT-CC---EEEEEEEECTTT----SSCEEEETT------EEEEEEETTTSCCTTCSEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCC-CC---ceEEEEEECccc----CCCceeecC------CceEEEeCCHHHhccCCEE
Confidence            699999999999999998877753 21   137888765322    222222211      1223322223567899999


Q ss_pred             EEeCC
Q 022227           86 VMVGG   90 (300)
Q Consensus        86 i~~ag   90 (300)
                      |.+.+
T Consensus        68 f~a~~   72 (344)
T 3tz6_A           68 LFSAG   72 (344)
T ss_dssp             EECSC
T ss_pred             EECCC
Confidence            99864

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=96.47  E-value=0.013  Score=53.37  Aligned_cols=73  Identities=19%  Similarity=0.261  Sum_probs=42.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +++||+|+||+|.+|..++..|...+.    ..++++++....+.    |....+..      ..+.+..-..+.++++|
T Consensus         2 ~~~kV~I~GAtG~iG~~llr~L~~~~~----p~~elv~i~s~~~~----G~~~~~~~------~~i~~~~~~~~~~~~vD   67 (336)
T 2r00_A            2 QQFNVAIFGATGAVGETMLEVLQEREF----PVDELFLLASERSE----GKTYRFNG------KTVRVQNVEEFDWSQVH   67 (336)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTC----CEEEEEEEECTTTT----TCEEEETT------EEEEEEEGGGCCGGGCS
T ss_pred             CccEEEEECCCCHHHHHHHHHHhcCCC----CCEEEEEEECCCCC----CCceeecC------ceeEEecCChHHhcCCC
Confidence            357999999999999999998887521    11366666432111    11111111      12222211123567999


Q ss_pred             EEEEeCC
Q 022227           84 IAVMVGG   90 (300)
Q Consensus        84 vVi~~ag   90 (300)
                      +||.+.|
T Consensus        68 vVf~a~g   74 (336)
T 2r00_A           68 IALFSAG   74 (336)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9999854

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.40  E-value=0.009  Score=52.75  Aligned_cols=69  Identities=14%  Similarity=0.151  Sum_probs=48.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .+||+|+| +|.+|..++..|...|.       ++.++|++.  ++++..+.++         .+...++..+.++++|+
T Consensus       129 ~~~v~iiG-aG~~g~aia~~L~~~g~-------~V~v~~r~~--~~~~~l~~~~---------g~~~~~~~~~~~~~aDi  189 (275)
T 2hk9_A          129 EKSILVLG-AGGASRAVIYALVKEGA-------KVFLWNRTK--EKAIKLAQKF---------PLEVVNSPEEVIDKVQV  189 (275)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHHHHTC-------EEEEECSSH--HHHHHHTTTS---------CEEECSCGGGTGGGCSE
T ss_pred             CCEEEEEC-chHHHHHHHHHHHHcCC-------EEEEEECCH--HHHHHHHHHc---------CCeeehhHHhhhcCCCE
Confidence            47999999 79999999999988764       689999863  4333221111         12333466778899999


Q ss_pred             EEEeCCCC
Q 022227           85 AVMVGGFP   92 (300)
Q Consensus        85 Vi~~ag~~   92 (300)
                      ||.+....
T Consensus       190 Vi~atp~~  197 (275)
T 2hk9_A          190 IVNTTSVG  197 (275)
T ss_dssp             EEECSSTT
T ss_pred             EEEeCCCC
Confidence            99986543

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.37  E-value=0.002  Score=60.27  Aligned_cols=78  Identities=12%  Similarity=0.126  Sum_probs=48.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhccc-CCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEE----eCChhhhcC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVM-LGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA----TTDAVEACT   80 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~-~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~----~~~~~~a~~   80 (300)
                      +||+|+|| |.+|+.++..|++.+- +.     ++++.|++  .++++..+.++..........+..    ..+..+.++
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~-----~V~v~~r~--~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~   73 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMAMNREVFS-----HITLASRT--LSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALIN   73 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTCTTTCC-----EEEEEESC--HHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCce-----EEEEEECC--HHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHH
Confidence            59999995 9999999999987652 12     78999986  355554444443210000000011    123445566


Q ss_pred             C--CcEEEEeCCC
Q 022227           81 G--VNIAVMVGGF   91 (300)
Q Consensus        81 ~--aDvVi~~ag~   91 (300)
                      +  +|+||++++.
T Consensus        74 ~~~~DvVin~ag~   86 (405)
T 4ina_A           74 EVKPQIVLNIALP   86 (405)
T ss_dssp             HHCCSEEEECSCG
T ss_pred             hhCCCEEEECCCc
Confidence            6  8999999864

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=96.37  E-value=0.012  Score=53.89  Aligned_cols=61  Identities=20%  Similarity=0.181  Sum_probs=45.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..++|+|+| .|.||+.++..|...|+       +|..+|..+.  ...    +           .....++.+.+++||
T Consensus       170 ~gktiGIIG-lG~IG~~vA~~l~~~G~-------~V~~~dr~~~--~~~----~-----------~~~~~sl~ell~~aD  224 (340)
T 4dgs_A          170 KGKRIGVLG-LGQIGRALASRAEAFGM-------SVRYWNRSTL--SGV----D-----------WIAHQSPVDLARDSD  224 (340)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECSSCC--TTS----C-----------CEECSSHHHHHHTCS
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEcCCcc--ccc----C-----------ceecCCHHHHHhcCC
Confidence            357999999 89999999999886654       7899998642  100    0           112347888999999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +|+++.
T Consensus       225 vVil~v  230 (340)
T 4dgs_A          225 VLAVCV  230 (340)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            999974

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=96.35  E-value=0.0034  Score=54.34  Aligned_cols=36  Identities=14%  Similarity=0.117  Sum_probs=30.1

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEec
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI   44 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~   44 (300)
                      |..+.|||+||| +|.+|.+++..|...|+       +|+.+|.
T Consensus         2 ~~~~~mkI~IIG-~G~~G~sLA~~L~~~G~-------~V~~~~~   37 (232)
T 3dfu_A            2 MQAPRLRVGIFD-DGSSTVNMAEKLDSVGH-------YVTVLHA   37 (232)
T ss_dssp             -CCCCCEEEEEC-CSCCCSCHHHHHHHTTC-------EEEECSS
T ss_pred             CCCCCcEEEEEe-eCHHHHHHHHHHHHCCC-------EEEEecC
Confidence            556678999999 79999999999998874       7888875

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.34  E-value=0.005  Score=56.76  Aligned_cols=75  Identities=19%  Similarity=0.213  Sum_probs=42.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc--ccEEEeCChhhhcCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL--KGVVATTDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~--~~v~~~~~~~~a~~~   81 (300)
                      +++||+|+||+|.+|..++..|.+.+.      ++++.+....+.    +...+-.+..+...  .++... + .+.+++
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~------~elvai~~~~~~----g~~~~~~~~~~~~~v~~dl~~~-~-~~~~~~   82 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPH------FQVTLMTADRKA----GQSMESVFPHLRAQKLPTLVSV-K-DADFST   82 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSS------EEEEEEBCSTTT----TSCHHHHCGGGTTSCCCCCBCG-G-GCCGGG
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCC------cEEEEEeCchhc----CCCHHHhCchhcCcccccceec-c-hhHhcC
Confidence            447999999999999999998886532      366666432211    12222111111100  112222 1 345678


Q ss_pred             CcEEEEeCC
Q 022227           82 VNIAVMVGG   90 (300)
Q Consensus        82 aDvVi~~ag   90 (300)
                      +|+||++.+
T Consensus        83 vDvVf~atp   91 (359)
T 1xyg_A           83 VDAVFCCLP   91 (359)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEEcCC
Confidence            999999864

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.25  E-value=0.033  Score=50.76  Aligned_cols=71  Identities=11%  Similarity=0.092  Sum_probs=43.2

Q ss_pred             CCCCCcEEEEEcCCChHHH-HHHHHHHhcccCCCCCCeEE-EEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhh
Q 022227            1 MAKEPVRVLVTGAAGQIGY-ALVPMIARGVMLGTDQPVIL-HMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA   78 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~-~la~~L~~~~~~~~~~~~~l-~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a   78 (300)
                      |+|+++||+||| +|.+|. .++..|...+      ..++ .++|.++  ++++..+..+   .      +...++..+.
T Consensus        23 ~~m~~~rigiIG-~G~~g~~~~~~~l~~~~------~~~l~av~d~~~--~~~~~~a~~~---g------~~~~~~~~~l   84 (350)
T 3rc1_A           23 ANANPIRVGVIG-CADIAWRRALPALEAEP------LTEVTAIASRRW--DRAKRFTERF---G------GEPVEGYPAL   84 (350)
T ss_dssp             ---CCEEEEEES-CCHHHHHTHHHHHHHCT------TEEEEEEEESSH--HHHHHHHHHH---C------SEEEESHHHH
T ss_pred             CCCCceEEEEEc-CcHHHHHHHHHHHHhCC------CeEEEEEEcCCH--HHHHHHHHHc---C------CCCcCCHHHH
Confidence            346678999999 799998 6787777642      1255 4778763  4443222211   1      1122577777


Q ss_pred             cC--CCcEEEEeC
Q 022227           79 CT--GVNIAVMVG   89 (300)
Q Consensus        79 ~~--~aDvVi~~a   89 (300)
                      ++  ++|+|+++-
T Consensus        85 l~~~~~D~V~i~t   97 (350)
T 3rc1_A           85 LERDDVDAVYVPL   97 (350)
T ss_dssp             HTCTTCSEEEECC
T ss_pred             hcCCCCCEEEECC
Confidence            76  589999863

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=96.19  E-value=0.012  Score=53.54  Aligned_cols=70  Identities=17%  Similarity=0.310  Sum_probs=45.8

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEE-EEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC-
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVIL-HMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT-   80 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l-~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~-   80 (300)
                      ++++||+||| +|.+|...+..|....     ...++ .++|.++  ++++..+..+         .+...++..+.++ 
T Consensus        11 ~~~~rvgiiG-~G~~g~~~~~~l~~~~-----~~~~lvav~d~~~--~~~~~~~~~~---------~~~~~~~~~~ll~~   73 (354)
T 3q2i_A           11 DRKIRFALVG-CGRIANNHFGALEKHA-----DRAELIDVCDIDP--AALKAAVERT---------GARGHASLTDMLAQ   73 (354)
T ss_dssp             SSCEEEEEEC-CSTTHHHHHHHHHHTT-----TTEEEEEEECSSH--HHHHHHHHHH---------CCEEESCHHHHHHH
T ss_pred             CCcceEEEEc-CcHHHHHHHHHHHhCC-----CCeEEEEEEcCCH--HHHHHHHHHc---------CCceeCCHHHHhcC
Confidence            4568999999 7999999988887641     01254 4788863  4443222211         1234567777776 


Q ss_pred             -CCcEEEEeC
Q 022227           81 -GVNIAVMVG   89 (300)
Q Consensus        81 -~aDvVi~~a   89 (300)
                       ++|+|+++-
T Consensus        74 ~~~D~V~i~t   83 (354)
T 3q2i_A           74 TDADIVILTT   83 (354)
T ss_dssp             CCCSEEEECS
T ss_pred             CCCCEEEECC
Confidence             899999864

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=96.19  E-value=0.02  Score=52.34  Aligned_cols=70  Identities=14%  Similarity=0.218  Sum_probs=44.2

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEE-EEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVIL-HMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC   79 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l-~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~   79 (300)
                      |+|+++||+||| +|.+|...+..|....      ..++ .++|.++  ++++ .+   ...      .+...++.++.+
T Consensus         1 M~m~~~~vgiiG-~G~~g~~~~~~l~~~~------~~~l~av~d~~~--~~~~-~a---~~~------g~~~~~~~~~ll   61 (359)
T 3e18_A            1 MSLKKYQLVIVG-YGGMGSYHVTLASAAD------NLEVHGVFDILA--EKRE-AA---AQK------GLKIYESYEAVL   61 (359)
T ss_dssp             --CCCEEEEEEC-CSHHHHHHHHHHHTST------TEEEEEEECSSH--HHHH-HH---HTT------TCCBCSCHHHHH
T ss_pred             CCCCcCcEEEEC-cCHHHHHHHHHHHhCC------CcEEEEEEcCCH--HHHH-HH---Hhc------CCceeCCHHHHh
Confidence            788889999999 7999998888776542      1255 4678763  3332 11   111      112345777777


Q ss_pred             C--CCcEEEEeC
Q 022227           80 T--GVNIAVMVG   89 (300)
Q Consensus        80 ~--~aDvVi~~a   89 (300)
                      +  ++|+|+++-
T Consensus        62 ~~~~~D~V~i~t   73 (359)
T 3e18_A           62 ADEKVDAVLIAT   73 (359)
T ss_dssp             HCTTCCEEEECS
T ss_pred             cCCCCCEEEEcC
Confidence            6  789999864

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=96.18  E-value=0.009  Score=54.45  Aligned_cols=61  Identities=18%  Similarity=0.144  Sum_probs=45.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..+||+|+| .|.+|+.++..|...|+       +|..+|..+.  ...+               +....++.+.+++||
T Consensus       163 ~g~~vgIIG-~G~iG~~vA~~l~~~G~-------~V~~~dr~~~--~~~g---------------~~~~~~l~ell~~aD  217 (333)
T 3ba1_A          163 SGKRVGIIG-LGRIGLAVAERAEAFDC-------PISYFSRSKK--PNTN---------------YTYYGSVVELASNSD  217 (333)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHHTTTC-------CEEEECSSCC--TTCC---------------SEEESCHHHHHHTCS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEECCCch--hccC---------------ceecCCHHHHHhcCC
Confidence            357899999 79999999999987664       6889998642  1110               122346778899999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +|+++.
T Consensus       218 vVil~v  223 (333)
T 3ba1_A          218 ILVVAC  223 (333)
T ss_dssp             EEEECS
T ss_pred             EEEEec
Confidence            999975

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=96.15  E-value=0.021  Score=52.40  Aligned_cols=74  Identities=15%  Similarity=0.091  Sum_probs=50.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHh-cccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~-~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      +..+|+|+| +|.+|...+..|+. .+. .     ++.++|++  .++++..+.++...   ....+...++..+++++|
T Consensus       128 ~~~~v~iIG-aG~~a~~~a~al~~~~~~-~-----~V~V~~r~--~~~a~~la~~~~~~---~g~~~~~~~~~~eav~~a  195 (350)
T 1x7d_A          128 NARKMALIG-NGAQSEFQALAFHKHLGI-E-----EIVAYDTD--PLATAKLIANLKEY---SGLTIRRASSVAEAVKGV  195 (350)
T ss_dssp             TCCEEEEEC-CSTTHHHHHHHHHHHSCC-C-----EEEEECSS--HHHHHHHHHHHTTC---TTCEEEECSSHHHHHTTC
T ss_pred             cCCeEEEEC-CcHHHHHHHHHHHHhCCC-c-----EEEEEcCC--HHHHHHHHHHHHhc---cCceEEEeCCHHHHHhcC
Confidence            457999999 79999998877754 222 1     79999986  35555444443221   011244556788899999


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |+||.+-
T Consensus       196 DiVi~aT  202 (350)
T 1x7d_A          196 DIITTVT  202 (350)
T ss_dssp             SEEEECC
T ss_pred             CEEEEec
Confidence            9998874

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.14  E-value=0.0054  Score=58.54  Aligned_cols=77  Identities=8%  Similarity=0.081  Sum_probs=46.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +.+||+|+| +|.+|..++..|++.+-      .+|+++|++.  ++++..+.+ .... ....++.-..+..++++++|
T Consensus        22 ~~k~VlIiG-AGgiG~aia~~L~~~~g------~~V~v~~R~~--~ka~~la~~-~~~~-~~~~D~~d~~~l~~~l~~~D   90 (467)
T 2axq_A           22 MGKNVLLLG-SGFVAQPVIDTLAANDD------INVTVACRTL--ANAQALAKP-SGSK-AISLDVTDDSALDKVLADND   90 (467)
T ss_dssp             -CEEEEEEC-CSTTHHHHHHHHHTSTT------EEEEEEESSH--HHHHHHHGG-GTCE-EEECCTTCHHHHHHHHHTSS
T ss_pred             CCCEEEEEC-ChHHHHHHHHHHHhCCC------CeEEEEECCH--HHHHHHHHh-cCCc-EEEEecCCHHHHHHHHcCCC
Confidence            456899999 59999999999987621      2789999863  444332211 1100 00000000013456678999


Q ss_pred             EEEEeCCC
Q 022227           84 IAVMVGGF   91 (300)
Q Consensus        84 vVi~~ag~   91 (300)
                      +||.+++.
T Consensus        91 vVIn~tp~   98 (467)
T 2axq_A           91 VVISLIPY   98 (467)
T ss_dssp             EEEECSCG
T ss_pred             EEEECCch
Confidence            99999764

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=96.13  E-value=0.068  Score=42.10  Aligned_cols=61  Identities=18%  Similarity=0.303  Sum_probs=39.0

Q ss_pred             CCcEEEEEcCC---ChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            4 EPVRVLVTGAA---GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         4 ~~~kV~IiGAa---G~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      ++.+|+|+|++   |.+|..++..|...|+       ++  ++.++..+.+.               .+....+..+..+
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~-------~V--~~vnp~~~~i~---------------G~~~~~s~~el~~   68 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSKGF-------EV--LPVNPNYDEIE---------------GLKCYRSVRELPK   68 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHTTC-------EE--EEECTTCSEET---------------TEECBSSGGGSCT
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHCCC-------EE--EEeCCCCCeEC---------------CeeecCCHHHhCC
Confidence            46799999943   9999999999988765       54  44443211111               1122234555556


Q ss_pred             CCcEEEEe
Q 022227           81 GVNIAVMV   88 (300)
Q Consensus        81 ~aDvVi~~   88 (300)
                      .+|+++++
T Consensus        69 ~vDlvii~   76 (138)
T 1y81_A           69 DVDVIVFV   76 (138)
T ss_dssp             TCCEEEEC
T ss_pred             CCCEEEEE
Confidence            79999997

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.12  E-value=0.0062  Score=55.84  Aligned_cols=72  Identities=17%  Similarity=0.182  Sum_probs=44.4

Q ss_pred             CCCCCcEEEEEcCCChHHHH-HHHHHHhcccCCCCCCeEEE-EEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYA-LVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA   78 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~-la~~L~~~~~~~~~~~~~l~-L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a   78 (300)
                      |+|+++||+||| +|.+|.. ++..|....      ..+++ ++|.++  ++++..+..+        ......++.++.
T Consensus         1 M~M~~~rigiIG-~G~~g~~~~~~~l~~~~------~~~l~av~d~~~--~~~~~~a~~~--------~~~~~~~~~~~l   63 (359)
T 3m2t_A            1 MSLSLIKVGLVG-IGAQMQENLLPSLLQMQ------DIRIVAACDSDL--ERARRVHRFI--------SDIPVLDNVPAM   63 (359)
T ss_dssp             --CCCEEEEEEC-CSHHHHHTHHHHHHTCT------TEEEEEEECSSH--HHHGGGGGTS--------CSCCEESSHHHH
T ss_pred             CCCCcceEEEEC-CCHHHHHHHHHHHHhCC------CcEEEEEEcCCH--HHHHHHHHhc--------CCCcccCCHHHH
Confidence            788889999999 7999984 777776532      13554 788863  4443222111        112234577777


Q ss_pred             cC--CCcEEEEeC
Q 022227           79 CT--GVNIAVMVG   89 (300)
Q Consensus        79 ~~--~aDvVi~~a   89 (300)
                      ++  +.|+|+++.
T Consensus        64 l~~~~vD~V~i~t   76 (359)
T 3m2t_A           64 LNQVPLDAVVMAG   76 (359)
T ss_dssp             HHHSCCSEEEECS
T ss_pred             hcCCCCCEEEEcC
Confidence            76  569999863

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=96.11  E-value=0.021  Score=50.84  Aligned_cols=75  Identities=23%  Similarity=0.202  Sum_probs=46.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEE-EEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVIL-HMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l-~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      +++||+|+||+|.+|+.++..+.+..      ..+| ..+|.+..  ...|  .|+.+........+.+++++.+.++++
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~------~~eLvg~vd~~~~--~~~G--~d~gel~G~~~~gv~v~~dl~~ll~~a   89 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRK------DVELCAVLVRKGS--SFVD--KDASILIGSDFLGVRITDDPESAFSNT   89 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCS------SEEEEEEBCCTTC--TTTT--SBGGGGTTCSCCSCBCBSCHHHHTTSC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCC------CCEEEEEEecCCc--cccc--cchHHhhccCcCCceeeCCHHHHhcCC
Confidence            45799999999999999998887542      1243 45576431  1112  122221100112445667888888999


Q ss_pred             cEEEEe
Q 022227           83 NIAVMV   88 (300)
Q Consensus        83 DvVi~~   88 (300)
                      |+||-.
T Consensus        90 DVvIDF   95 (288)
T 3ijp_A           90 EGILDF   95 (288)
T ss_dssp             SEEEEC
T ss_pred             CEEEEc
Confidence            998864

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=96.09  E-value=0.013  Score=52.54  Aligned_cols=71  Identities=14%  Similarity=0.170  Sum_probs=40.2

Q ss_pred             CCCCCcEEEEEcCCChHHHH-HHHHHHhcccCCCCCCeEEE-EEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYA-LVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA   78 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~-la~~L~~~~~~~~~~~~~l~-L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a   78 (300)
                      |+|+++||+|+| +|.+|.. ++..|....      ..+++ ++|.++  ++++..+..+   ..+      ..++.++.
T Consensus         1 m~m~~~~vgiiG-~G~~g~~~~~~~l~~~~------~~~lvav~d~~~--~~~~~~~~~~---g~~------~~~~~~~l   62 (319)
T 1tlt_A            1 MSLKKLRIGVVG-LGGIAQKAWLPVLAAAS------DWTLQGAWSPTR--AKALPICESW---RIP------YADSLSSL   62 (319)
T ss_dssp             ----CEEEEEEC-CSTHHHHTHHHHHHSCS------SEEEEEEECSSC--TTHHHHHHHH---TCC------BCSSHHHH
T ss_pred             CCCCcceEEEEC-CCHHHHHHHHHHHHhCC------CeEEEEEECCCH--HHHHHHHHHc---CCC------ccCcHHHh
Confidence            888889999999 7999986 777776431      12554 888864  3333222111   101      23344332


Q ss_pred             cCCCcEEEEeC
Q 022227           79 CTGVNIAVMVG   89 (300)
Q Consensus        79 ~~~aDvVi~~a   89 (300)
                      ..++|+|+++.
T Consensus        63 ~~~~D~V~i~t   73 (319)
T 1tlt_A           63 AASCDAVFVHS   73 (319)
T ss_dssp             HTTCSEEEECS
T ss_pred             hcCCCEEEEeC
Confidence            36899999874

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=96.09  E-value=0.028  Score=55.34  Aligned_cols=147  Identities=13%  Similarity=0.092  Sum_probs=80.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccE-E----EeCChh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGV-V----ATTDAV   76 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v-~----~~~~~~   76 (300)
                      .+.+.||||++-||..++..|+..|.       .|++.|+... +.   ...++.....   ....++ .    .-....
T Consensus       322 gkvalVTGas~GIG~a~A~~la~~Ga-------~Vv~~~~~~~-~~---~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~  390 (604)
T 2et6_A          322 DKVVLITGAGAGLGKEYAKWFAKYGA-------KVVVNDFKDA-TK---TVDEIKAAGGEAWPDQHDVAKDSEAIIKNVI  390 (604)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEECSSCC-HH---HHHHHHHTTCEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCeEEEECcchHHHHHHHHHHHHCCC-------EEEEEeCccH-HH---HHHHHHhcCCeEEEEEcChHHHHHHHHHHHH
Confidence            45788999999999999999999885       7888886421 11   1222221100   000011 0    000112


Q ss_pred             hhcCCCcEEEEeCCCCCCC---CCcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           77 EACTGVNIAVMVGGFPRKE---GMERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~---g~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                      +.+-..|++|..||..+..   .++..   ..+..|+.    ..+...+.+++..  ...||++|+....         .
T Consensus       391 ~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~IVnisS~ag~---------~  459 (604)
T 2et6_A          391 DKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQ--FGRIINITSTSGI---------Y  459 (604)
T ss_dssp             HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCHHHH---------S
T ss_pred             HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECChhhc---------c
Confidence            2345789999999975422   23333   34566654    4455555555442  3578888864431         1


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      +.|..-.|+.++.-...+.+.+|.++.
T Consensus       460 ~~~~~~~Y~asKaal~~lt~~la~El~  486 (604)
T 2et6_A          460 GNFGQANYSSSKAGILGLSKTMAIEGA  486 (604)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhC
Confidence            222222345555555566666676653

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=96.08  E-value=0.025  Score=50.95  Aligned_cols=85  Identities=13%  Similarity=0.128  Sum_probs=49.0

Q ss_pred             cCCCcEEEEeCCCC---CCC--CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCC
Q 022227           79 CTGVNIAVMVGGFP---RKE--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPA  150 (300)
Q Consensus        79 ~~~aDvVi~~ag~~---~~~--g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~  150 (300)
                      +...|++|+.||..   ..+  ..+.   ...+..|+.....+.+.+..+-.+..++|++|+....         .+.|.
T Consensus       111 ~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~---------~~~~~  181 (329)
T 3lt0_A          111 YGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIMKPQSSIISLTYHASQ---------KVVPG  181 (329)
T ss_dssp             HCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT---------SCCTT
T ss_pred             cCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeCcccc---------CCCCc
Confidence            34679999999863   121  1222   3457788877777777766653323567887765431         12232


Q ss_pred             Cc-EEeeehhhHHHHHHHHHHHc
Q 022227          151 KN-ITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       151 ~~-i~~~t~ld~~R~~~~la~~l  172 (300)
                      .. .|+.++.-...+.+.++.++
T Consensus       182 ~~~~Y~asKaal~~~~~~la~el  204 (329)
T 3lt0_A          182 YGGGMSSAKAALESDTRVLAYHL  204 (329)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHh
Confidence            22 34555555555666666655

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.07  E-value=0.021  Score=52.84  Aligned_cols=110  Identities=20%  Similarity=0.279  Sum_probs=65.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC----Cchhh--hhhhhhhhhhhccCCcccEEEeCChhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP----PAAEA--LNGVKMELVDAAFPLLKGVVATTDAVE   77 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~----~~~~~--l~g~~~dl~~~~~~~~~~v~~~~~~~~   77 (300)
                      +..||+|+| +|.+|..++..|+..|. .     ++.++|++    ...+.  +......+.+....    .....++.+
T Consensus       191 ~~~kVVv~G-AGaAG~~iAkll~~~G~-~-----~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~----~~~~~~L~e  259 (388)
T 1vl6_A          191 EEVKVVVNG-IGAAGYNIVKFLLDLGV-K-----NVVAVDRKGILNENDPETCLNEYHLEIARITNP----ERLSGDLET  259 (388)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHHTC-C-----EEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT----TCCCSCHHH
T ss_pred             CCcEEEEEC-CCHHHHHHHHHHHhCCC-C-----eEEEEECCCcccCCCcccccCHHHHHHHHhhhc----cCchhhHHH
Confidence            567999999 79999999999988764 2     79999986    32111  32222223222111    112347899


Q ss_pred             hcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch-hhHHHHHHH
Q 022227           78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA-NTNALILKE  143 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~-~~~~~~~~~  143 (300)
                      +++++|++|=+.+ |.  -.+            +++++.|+   + +.+++=.+||. ......+.+
T Consensus       260 av~~ADVlIG~Sa-p~--l~t------------~emVk~Ma---~-~pIIfalSNPt~E~~p~~a~~  307 (388)
T 1vl6_A          260 ALEGADFFIGVSR-GN--ILK------------PEWIKKMS---R-KPVIFALANPVPEIDPELARE  307 (388)
T ss_dssp             HHTTCSEEEECSC-SS--CSC------------HHHHTTSC---S-SCEEEECCSSSCSSCHHHHHH
T ss_pred             HHccCCEEEEeCC-CC--ccC------------HHHHHhcC---C-CCEEEEcCCCCCCCCHHHHHH
Confidence            9999999887754 31  112            23344333   2 34677779996 333343333

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.01  E-value=0.013  Score=50.94  Aligned_cols=34  Identities=35%  Similarity=0.560  Sum_probs=29.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      .||+|+| +|.+|+.++..|+..|+ +     ++.++|.+.
T Consensus        32 ~~VlVvG-~Gg~G~~va~~La~~Gv-~-----~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVG-LGGLGCAASQYLASAGV-G-----NLTLLDFDT   65 (249)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTC-S-----EEEEECCCB
T ss_pred             CeEEEEe-eCHHHHHHHHHHHHcCC-C-----eEEEEcCCC
Confidence            6899999 79999999999998875 3     799999864

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=95.98  E-value=0.029  Score=52.72  Aligned_cols=66  Identities=20%  Similarity=0.235  Sum_probs=45.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..++|+|+| .|.||..++..|...|.       +|..+|+++  .++. .+.  .+.       +. ..++.++++++|
T Consensus       219 ~GktV~ViG-~G~IGk~vA~~Lra~Ga-------~Viv~D~dp--~ra~-~A~--~~G-------~~-v~~Leeal~~AD  277 (435)
T 3gvp_A          219 GGKQVVVCG-YGEVGKGCCAALKAMGS-------IVYVTEIDP--ICAL-QAC--MDG-------FR-LVKLNEVIRQVD  277 (435)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHH-HHH--HTT-------CE-ECCHHHHTTTCS
T ss_pred             cCCEEEEEe-eCHHHHHHHHHHHHCCC-------EEEEEeCCh--hhhH-HHH--HcC-------CE-eccHHHHHhcCC
Confidence            457999999 79999999999887664       788899863  2211 111  111       11 125788999999


Q ss_pred             EEEEeCC
Q 022227           84 IAVMVGG   90 (300)
Q Consensus        84 vVi~~ag   90 (300)
                      +||.+.|
T Consensus       278 IVi~atg  284 (435)
T 3gvp_A          278 IVITCTG  284 (435)
T ss_dssp             EEEECSS
T ss_pred             EEEECCC
Confidence            9999744

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=95.97  E-value=0.0069  Score=55.84  Aligned_cols=79  Identities=11%  Similarity=0.098  Sum_probs=46.0

Q ss_pred             CCCCCcEEEEEcCCChHHHH-HH----HHHHhcccCC----CCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEE
Q 022227            1 MAKEPVRVLVTGAAGQIGYA-LV----PMIARGVMLG----TDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA   71 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~-la----~~L~~~~~~~----~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~   71 (300)
                      |+++++||+|+|++|++|.. .+    ..+...+.+.    ....+++.++|.++  ++++..+..+.   .+     ..
T Consensus         2 ~~~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~--~~a~~~a~~~~---~~-----~~   71 (383)
T 3oqb_A            2 LTTQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSA--EKVEALAKRFN---IA-----RW   71 (383)
T ss_dssp             -CCEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSS--HHHHHHHHHTT---CC-----CE
T ss_pred             CCCceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCH--HHHHHHHHHhC---CC-----cc
Confidence            66778899999988999997 55    5555443110    00011335888864  44443322211   01     13


Q ss_pred             eCChhhhcCC--CcEEEEeC
Q 022227           72 TTDAVEACTG--VNIAVMVG   89 (300)
Q Consensus        72 ~~~~~~a~~~--aDvVi~~a   89 (300)
                      .++.++.+++  .|+|+++.
T Consensus        72 ~~~~~~ll~~~~iD~V~i~t   91 (383)
T 3oqb_A           72 TTDLDAALADKNDTMFFDAA   91 (383)
T ss_dssp             ESCHHHHHHCSSCCEEEECS
T ss_pred             cCCHHHHhcCCCCCEEEECC
Confidence            4577777764  89998864

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=95.97  E-value=0.042  Score=49.97  Aligned_cols=69  Identities=12%  Similarity=0.173  Sum_probs=44.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEE-EEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc--
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVIL-HMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC--   79 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l-~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~--   79 (300)
                      ++++||+||| +|.+|...+..|....      ..++ .++|.++  ++++..+..+   .      +...++..+.+  
T Consensus         3 ~~~~~vgiiG-~G~~g~~~~~~l~~~~------~~~lvav~d~~~--~~~~~~~~~~---g------~~~~~~~~~~l~~   64 (354)
T 3db2_A            3 YNPVGVAAIG-LGRWAYVMADAYTKSE------KLKLVTCYSRTE--DKREKFGKRY---N------CAGDATMEALLAR   64 (354)
T ss_dssp             CCCEEEEEEC-CSHHHHHHHHHHTTCS------SEEEEEEECSSH--HHHHHHHHHH---T------CCCCSSHHHHHHC
T ss_pred             CCcceEEEEc-cCHHHHHHHHHHHhCC------CcEEEEEECCCH--HHHHHHHHHc---C------CCCcCCHHHHhcC
Confidence            3458999999 7999999888776531      1354 4778863  4444322211   1      11235777777  


Q ss_pred             CCCcEEEEeC
Q 022227           80 TGVNIAVMVG   89 (300)
Q Consensus        80 ~~aDvVi~~a   89 (300)
                      .++|+|+++-
T Consensus        65 ~~~D~V~i~t   74 (354)
T 3db2_A           65 EDVEMVIITV   74 (354)
T ss_dssp             SSCCEEEECS
T ss_pred             CCCCEEEEeC
Confidence            5799999874

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=95.95  E-value=0.024  Score=54.10  Aligned_cols=69  Identities=13%  Similarity=0.068  Sum_probs=41.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhc------ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARG------VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC   79 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~------~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~   79 (300)
                      +||+||| .|.+|.+++..|...      |+       ++++.+...  ++....+.+  ....... .  ...+..+++
T Consensus        55 KkIgIIG-lGsMG~AmA~nLr~s~~~~g~G~-------~ViVg~r~~--sks~e~A~e--~G~~v~d-~--ta~s~aEAa  119 (525)
T 3fr7_A           55 KQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI-------VVKIGLRKG--SKSFDEARA--AGFTEES-G--TLGDIWETV  119 (525)
T ss_dssp             SEEEEEC-CTTHHHHHHHHHHHHHHHTTCCC-------EEEEEECTT--CSCHHHHHH--TTCCTTT-T--CEEEHHHHH
T ss_pred             CEEEEEe-EhHHHHHHHHHHHhcccccCCCC-------EEEEEeCCc--hhhHHHHHH--CCCEEec-C--CCCCHHHHH
Confidence            7999999 899999999999887      54       455444331  111111111  1110000 0  012567899


Q ss_pred             CCCcEEEEeC
Q 022227           80 TGVNIAVMVG   89 (300)
Q Consensus        80 ~~aDvVi~~a   89 (300)
                      ++||+||++.
T Consensus       120 ~~ADVVILaV  129 (525)
T 3fr7_A          120 SGSDLVLLLI  129 (525)
T ss_dssp             HHCSEEEECS
T ss_pred             hcCCEEEECC
Confidence            9999999974

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.90  E-value=0.0095  Score=54.65  Aligned_cols=74  Identities=16%  Similarity=0.202  Sum_probs=43.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeC-ChhhhcCCCc
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT-DAVEACTGVN   83 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~-~~~~a~~~aD   83 (300)
                      +.||+|+||+|.+|.-++..|.....      ++|.++....+    .|...+=.+..+.  .++.+.. +..+.++++|
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~hP~------~el~~l~S~~~----aG~~~~~~~p~~~--~~l~~~~~~~~~~~~~~D   80 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNHPE------AKITYLSSRTY----AGKKLEEIFPSTL--ENSILSEFDPEKVSKNCD   80 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTT------EEEEEEECSTT----TTSBHHHHCGGGC--CCCBCBCCCHHHHHHHCS
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcCCC------cEEEEEeCccc----ccCChHHhChhhc--cCceEEeCCHHHhhcCCC
Confidence            46999999999999999999887643      37887765321    2222220011111  1222221 3333237899


Q ss_pred             EEEEeCC
Q 022227           84 IAVMVGG   90 (300)
Q Consensus        84 vVi~~ag   90 (300)
                      +||++.+
T Consensus        81 vvf~alp   87 (351)
T 1vkn_A           81 VLFTALP   87 (351)
T ss_dssp             EEEECCS
T ss_pred             EEEECCC
Confidence            9999853

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.89  E-value=0.021  Score=52.92  Aligned_cols=78  Identities=22%  Similarity=0.232  Sum_probs=48.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-C------cccE-------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-L------LKGV-------   69 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-~------~~~v-------   69 (300)
                      ++.||+|+| +|.+|...+..+...|.       +|..+|+++  ++++. ..++- ..+. .      ....       
T Consensus       183 ~~~kV~ViG-~G~iG~~aa~~a~~lGa-------~V~v~D~~~--~~l~~-~~~lG-a~~~~l~~~~~~~~gya~~~~~~  250 (381)
T 3p2y_A          183 KPASALVLG-VGVAGLQALATAKRLGA-------KTTGYDVRP--EVAEQ-VRSVG-AQWLDLGIDAAGEGGYARELSEA  250 (381)
T ss_dssp             CCCEEEEES-CSHHHHHHHHHHHHHTC-------EEEEECSSG--GGHHH-HHHTT-CEECCCC-------------CHH
T ss_pred             CCCEEEEEC-chHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHH-HHHcC-CeEEeccccccccccchhhhhHH
Confidence            457999999 69999999998887664       789999874  33331 11110 0000 0      0000       


Q ss_pred             ---EEeCChhhhcCCCcEEEEeCCCCC
Q 022227           70 ---VATTDAVEACTGVNIAVMVGGFPR   93 (300)
Q Consensus        70 ---~~~~~~~~a~~~aDvVi~~ag~~~   93 (300)
                         ....++.+++++||+||.++..|.
T Consensus       251 ~~~~~~~~l~e~l~~aDIVI~tv~iPg  277 (381)
T 3p2y_A          251 ERAQQQQALEDAITKFDIVITTALVPG  277 (381)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCCCTT
T ss_pred             HHhhhHHHHHHHHhcCCEEEECCCCCC
Confidence               001245678999999999876663

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.88  E-value=0.032  Score=47.80  Aligned_cols=71  Identities=17%  Similarity=0.111  Sum_probs=44.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      .+.++|+|+| +|.+|...+..|+..|.       ++++++.+.. +.++    ++.+.. .  -.+....-..+.+.++
T Consensus        29 L~gk~VLVVG-gG~va~~ka~~Ll~~GA-------~VtVvap~~~-~~l~----~l~~~~-~--i~~i~~~~~~~dL~~a   92 (223)
T 3dfz_A           29 LKGRSVLVVG-GGTIATRRIKGFLQEGA-------AITVVAPTVS-AEIN----EWEAKG-Q--LRVKRKKVGEEDLLNV   92 (223)
T ss_dssp             CTTCCEEEEC-CSHHHHHHHHHHGGGCC-------CEEEECSSCC-HHHH----HHHHTT-S--CEEECSCCCGGGSSSC
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEECCCCC-HHHH----HHHHcC-C--cEEEECCCCHhHhCCC
Confidence            3557999999 69999999999988764       6888986532 2222    222111 0  0111111234678999


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |+||.+-
T Consensus        93 dLVIaAT   99 (223)
T 3dfz_A           93 FFIVVAT   99 (223)
T ss_dssp             SEEEECC
T ss_pred             CEEEECC
Confidence            9998763

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=95.85  E-value=0.037  Score=50.04  Aligned_cols=71  Identities=17%  Similarity=0.151  Sum_probs=49.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~-~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      +..+|+|+| +|.+|...+..|... +. .     ++.++|++  .++++..+.++....    ..+. .++.++++ ++
T Consensus       124 ~~~~v~iIG-aG~~a~~~~~al~~~~~~-~-----~V~v~~r~--~~~a~~la~~~~~~~----~~~~-~~~~~e~v-~a  188 (322)
T 1omo_A          124 NSSVFGFIG-CGTQAYFQLEALRRVFDI-G-----EVKAYDVR--EKAAKKFVSYCEDRG----ISAS-VQPAEEAS-RC  188 (322)
T ss_dssp             TCCEEEEEC-CSHHHHHHHHHHHHHSCC-C-----EEEEECSS--HHHHHHHHHHHHHTT----CCEE-ECCHHHHT-SS
T ss_pred             CCCEEEEEc-CcHHHHHHHHHHHHhCCc-c-----EEEEECCC--HHHHHHHHHHHHhcC----ceEE-ECCHHHHh-CC
Confidence            457999999 799999999888763 22 1     79999986  356655544443210    1234 55778889 99


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |+|+.+-
T Consensus       189 DvVi~aT  195 (322)
T 1omo_A          189 DVLVTTT  195 (322)
T ss_dssp             SEEEECC
T ss_pred             CEEEEee
Confidence            9998864

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=95.81  E-value=0.022  Score=51.67  Aligned_cols=70  Identities=23%  Similarity=0.209  Sum_probs=45.5

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEE-EEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC   79 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~-L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~   79 (300)
                      |+ +++||+||| +|.+|...+..|....-      .+++ ++|.++  ++++..+..+         .....++..+.+
T Consensus         1 M~-~~~rvgiiG-~G~~g~~~~~~l~~~~~------~~l~av~d~~~--~~~~~~a~~~---------g~~~~~~~~~~l   61 (344)
T 3euw_A            1 MS-LTLRIALFG-AGRIGHVHAANIAANPD------LELVVIADPFI--EGAQRLAEAN---------GAEAVASPDEVF   61 (344)
T ss_dssp             ---CCEEEEEEC-CSHHHHHHHHHHHHCTT------EEEEEEECSSH--HHHHHHHHTT---------TCEEESSHHHHT
T ss_pred             CC-CceEEEEEC-CcHHHHHHHHHHHhCCC------cEEEEEECCCH--HHHHHHHHHc---------CCceeCCHHHHh
Confidence            53 357999999 79999999988876421      2554 788763  4443222211         123456788888


Q ss_pred             C--CCcEEEEeC
Q 022227           80 T--GVNIAVMVG   89 (300)
Q Consensus        80 ~--~aDvVi~~a   89 (300)
                      +  ++|+|+++.
T Consensus        62 ~~~~~D~V~i~t   73 (344)
T 3euw_A           62 ARDDIDGIVIGS   73 (344)
T ss_dssp             TCSCCCEEEECS
T ss_pred             cCCCCCEEEEeC
Confidence            8  899999874

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=95.78  E-value=0.024  Score=51.11  Aligned_cols=72  Identities=13%  Similarity=0.057  Sum_probs=48.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ...+|+|+| +|.+|...+..|....-+.     +|.++|++    +++..+.++....   ...+... +.++++++||
T Consensus       120 ~~~~v~iIG-aG~~a~~~~~al~~~~~~~-----~V~v~~r~----~a~~la~~l~~~~---g~~~~~~-~~~eav~~aD  185 (313)
T 3hdj_A          120 RSSVLGLFG-AGTQGAEHAAQLSARFALE-----AILVHDPY----ASPEILERIGRRC---GVPARMA-APADIAAQAD  185 (313)
T ss_dssp             TCCEEEEEC-CSHHHHHHHHHHHHHSCCC-----EEEEECTT----CCHHHHHHHHHHH---TSCEEEC-CHHHHHHHCS
T ss_pred             CCcEEEEEC-ccHHHHHHHHHHHHhCCCc-----EEEEECCc----HHHHHHHHHHHhc---CCeEEEe-CHHHHHhhCC
Confidence            457999999 7999999998887532122     79999986    2333333343211   1233445 7889999999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +||.+-
T Consensus       186 IVi~aT  191 (313)
T 3hdj_A          186 IVVTAT  191 (313)
T ss_dssp             EEEECC
T ss_pred             EEEEcc
Confidence            999864

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=95.78  E-value=0.053  Score=49.55  Aligned_cols=69  Identities=14%  Similarity=0.170  Sum_probs=43.3

Q ss_pred             CCCCCcEEEEEcCCChHHHH-HHHHHHhcccCCCCCCeEE-EEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYA-LVPMIARGVMLGTDQPVIL-HMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA   78 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~-la~~L~~~~~~~~~~~~~l-~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a   78 (300)
                      |+|+++||+|+| +|.+|.. .+..|....      ..+| .++|.++  +++.   .++        ......++.++.
T Consensus         1 M~~~~~rvgiiG-~G~~g~~~~~~~l~~~~------~~~l~av~d~~~--~~~~---~~~--------~~~~~~~~~~~l   60 (362)
T 3fhl_A            1 MSLEIIKTGLAA-FGMSGQVFHAPFISTNP------HFELYKIVERSK--ELSK---ERY--------PQASIVRSFKEL   60 (362)
T ss_dssp             --CCCEEEEESC-CSHHHHHTTHHHHHHCT------TEEEEEEECSSC--CGGG---TTC--------TTSEEESCSHHH
T ss_pred             CCCCceEEEEEC-CCHHHHHHHHHHHhhCC------CeEEEEEEcCCH--HHHH---HhC--------CCCceECCHHHH
Confidence            888889999999 7999986 566665432      1254 5778764  2211   001        122345677787


Q ss_pred             cCC--CcEEEEeC
Q 022227           79 CTG--VNIAVMVG   89 (300)
Q Consensus        79 ~~~--aDvVi~~a   89 (300)
                      +++  .|+|+++-
T Consensus        61 l~~~~vD~V~i~t   73 (362)
T 3fhl_A           61 TEDPEIDLIVVNT   73 (362)
T ss_dssp             HTCTTCCEEEECS
T ss_pred             hcCCCCCEEEEeC
Confidence            876  89999974

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=95.76  E-value=0.031  Score=47.91  Aligned_cols=56  Identities=21%  Similarity=0.240  Sum_probs=40.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEE-EEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc-CCCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVIL-HMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC-TGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l-~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~-~~aD   83 (300)
                      |||+|+| +|.+|..++..|...++       ++ .++|.++   +++.                 ..++..+.+ .++|
T Consensus         1 m~vgiIG-~G~mG~~~~~~l~~~g~-------~lv~v~d~~~---~~~~-----------------~~~~~~~l~~~~~D   52 (236)
T 2dc1_A            1 MLVGLIG-YGAIGKFLAEWLERNGF-------EIAAILDVRG---EHEK-----------------MVRGIDEFLQREMD   52 (236)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEECSSC---CCTT-----------------EESSHHHHTTSCCS
T ss_pred             CEEEEEC-CCHHHHHHHHHHhcCCC-------EEEEEEecCc---chhh-----------------hcCCHHHHhcCCCC
Confidence            4899999 69999999988875543       55 6888753   1211                 234666666 6999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +||++.
T Consensus        53 vVv~~~   58 (236)
T 2dc1_A           53 VAVEAA   58 (236)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            999985

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=95.75  E-value=0.017  Score=51.63  Aligned_cols=61  Identities=11%  Similarity=0.034  Sum_probs=46.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..++|+|+| .|.||..++..|...|+       +|..+|..+.  ....               ....+++.+.+++||
T Consensus       121 ~g~tvGIIG-lG~IG~~vA~~l~~~G~-------~V~~~dr~~~--~~~~---------------~~~~~~l~ell~~aD  175 (290)
T 3gvx_A          121 YGKALGILG-YGGIGRRVAHLAKAFGM-------RVIAYTRSSV--DQNV---------------DVISESPADLFRQSD  175 (290)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHHTC-------EEEEECSSCC--CTTC---------------SEECSSHHHHHHHCS
T ss_pred             ecchheeec-cCchhHHHHHHHHhhCc-------EEEEEecccc--cccc---------------ccccCChHHHhhccC
Confidence            347999999 89999999999987664       7999998642  1111               112347788899999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +|+++.
T Consensus       176 iV~l~~  181 (290)
T 3gvx_A          176 FVLIAI  181 (290)
T ss_dssp             EEEECC
T ss_pred             eEEEEe
Confidence            999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	300
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	4e-57
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	7e-44
d1y7ta1	154	c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th	2e-43
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	1e-32
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	2e-32
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	8e-26
d2cmda1	145	c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi	2e-24
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	5e-22
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	7e-22
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	3e-19
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	4e-17
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	5e-17
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	1e-16
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	2e-16
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	6e-16
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	8e-16
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	1e-15
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	1e-15
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	1e-15
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	2e-15
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	7e-15
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	8e-15
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	2e-14
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	6e-14
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	5e-13
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	7e-13
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	8e-13
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	3e-12
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	4e-12
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	6e-12
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	8e-12
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	2e-11
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	4e-11
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	1e-10
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	9e-10
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	3e-09
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	5e-09
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	5e-09
d1up7a1	162	c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther	7e-09
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	8e-09
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	1e-08
d1u8xx1	167	c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase	5e-07
d1pzga1	154	c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas	7e-07
d1s6ya1	169	c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci	5e-05
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	6e-05
d1obba1	171	c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto	2e-04
d1e6ua_	315	c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras	3e-04
d1ek6a_	346	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	0.002
d1sb8a_	341	c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W	0.004

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score =  179 bits (456), Expect = 4e-57
 Identities = 68/156 (43%), Positives = 90/156 (57%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
             K+ V + V+GAAG I   L+  +A G + G DQP+ L +L    + +AL GV MEL D
Sbjct: 20  SWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELED 79

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
           + +PLL+ V    D  E    V+ A+++G  PR  GMER  ++  N  I+  Q  AL   
Sbjct: 80  SLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAV 139

Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156
           A+ N KVLVV NP NTNALI  + AP IPAKN   L
Sbjct: 140 ASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHAL 175

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  145 bits (366), Expect = 7e-44
 Identities = 81/153 (52%), Positives = 108/153 (70%)

Query: 4   EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
           EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A 
Sbjct: 2   EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 61

Query: 64  PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
           PLLK V+AT     A   +++A++VG  PR++GMERKD++  NV I+K Q +AL+++A  
Sbjct: 62  PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 121

Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCL 156
           + KV+VV NPANTN L   + APSIP +N +CL
Sbjct: 122 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCL 154

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  144 bits (363), Expect = 2e-43
 Identities = 85/152 (55%), Positives = 103/152 (67%)

Query: 3   KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
           K PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L+IP A +AL GV MEL D A
Sbjct: 2   KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61

Query: 63  FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
           FPLL G+ AT D   A    + A++VG  PRK GMER+D++  N  I+  Q  AL + A 
Sbjct: 62  FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121

Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNIT 154
            + KVLVV NPANTNALI  + AP +  +N T
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFT 153

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  116 bits (292), Expect = 1e-32
 Identities = 75/104 (72%), Positives = 82/104 (78%)

Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
           TRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDVNHA V   A E  V E VKD
Sbjct: 1   TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60

Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVL 260
           D+WL GEFITTVQQRGAA+IKARKLSSA+SAA + CDH+RD   
Sbjct: 61  DSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWF 104

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score =  116 bits (292), Expect = 2e-32
 Identities = 50/108 (46%), Positives = 65/108 (60%), Gaps = 4/108 (3%)

Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
           TRLD NRA  Q++ K  V    V NV IWGNHS++Q PD  +A ++     +PV+E++K 
Sbjct: 1   TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDG----RPVKEVIKR 56

Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPE 264
             WL  EF  TVQ+RG A+I+    SSA S A S  D I+  V  TPE
Sbjct: 57  TKWLEEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPE 104

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 98.7 bits (245), Expect = 8e-26
 Identities = 57/109 (52%), Positives = 75/109 (68%), Gaps = 5/109 (4%)

Query: 156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVK 215
           +TRLDHNRA  Q+++K    V  ++ + +WGNHSS+ +PD+ HA V+     +P  ELV 
Sbjct: 1   MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDG----RPALELVD 56

Query: 216 DDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPE 264
            + W    FI TV QRGAAII+AR  SSA SAA++A +HIRDW LGTPE
Sbjct: 57  ME-WYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPE 104

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 93.9 bits (233), Expect = 2e-24
 Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 16/160 (10%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
           +V V GAAG IG AL  ++   +  G++    L + DI P      GV ++L      + 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTP---GVAVDLSHIPTAVK 54

Query: 67  KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
               +  DA  A  G ++ ++  G  RK GM+R D+ + N  I K     + +   P   
Sbjct: 55  IKGFSGEDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKAC 113

Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG 166
           + ++ NP NT   I  E                D N+  G
Sbjct: 114 IGIITNPVNTTVAIAAEVLKK--------AGVYDKNKLFG 145

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 87.7 bits (217), Expect = 5e-22
 Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 19/161 (11%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL- 65
           +V V GA+G IG  L  ++    ++       L + DI        GV  +L        
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSR-----LTLYDIAHT----PGVAADLSHIETRAT 52

Query: 66  LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
           +KG +      +   G ++ V+  G PRK GM R D+ + N +I     +A  QH  P+ 
Sbjct: 53  VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDA 111

Query: 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG 166
            + +++NP N+   I  E                + N+  G
Sbjct: 112 MICIISNPVNSTIPITAEVFKK--------HGVYNPNKIFG 144

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score = 88.0 bits (217), Expect = 7e-22
 Identities = 53/106 (50%), Positives = 70/106 (66%), Gaps = 4/106 (3%)

Query: 158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 217
           RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D  +A +        V++++ DD
Sbjct: 2   RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQI----DGASVKDMINDD 57

Query: 218 AWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 263
           AW    F+ TV +RGAAII AR +SSA SAA++A DHI DWVLGT 
Sbjct: 58  AWNRDTFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTA 103

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 80.0 bits (197), Expect = 3e-19
 Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
           +V V GAAG +G A    IA       D    +  +DIP   +   G   +         
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALR-----DIADEVVFVDIPDKEDDTVGQAADTNHGI-AYD 55

Query: 67  KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
                     E   G ++ V+  G PR+ G  R D+   N  I +   S+L++H   +  
Sbjct: 56  SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYI 114

Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG 166
            L  +NP +     L E                   + +G
Sbjct: 115 SLTTSNPVDLLNRHLYE------------AGDRSREQVIG 142

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 74.4 bits (182), Expect = 4e-17
 Identities = 31/163 (19%), Positives = 65/163 (39%), Gaps = 22/163 (13%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
           +V + GA+G++G A   ++A+   +       L ++    +   L G++ ++ DA     
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKD-----LVLIGREHSINKLEGLREDIYDALAGTR 56

Query: 67  ---KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
                 V + + +      ++ ++  G PRKEGM R D+   N  I    A  + +    
Sbjct: 57  SDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-- 114

Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG 166
           + K+ V+ NP +                     ++ + N+  G
Sbjct: 115 DTKIFVITNPVDVMTYKALVD------------SKFERNQVFG 145

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score = 74.4 bits (182), Expect = 5e-17
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
           ++ V GA G +G      +A   +    + V+L +++  P  +AL+   M          
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQL--ARELVLLDVVEGIPQGKALD---MYESGPVGLFD 55

Query: 67  KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
             V  + D        +I ++  G PRK GM R+D++ KN  I K     + +H + N  
Sbjct: 56  TKVTGSND-YADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPI 113

Query: 127 VLVVANPANTNALILKEFA 145
           ++VV+NP +    +    +
Sbjct: 114 IIVVSNPLDIMTHVAWVRS 132

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 74.1 bits (181), Expect = 1e-16
 Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 2/110 (1%)

Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVK- 215
           T LD  R    I+++  V V +V +  I G H  S+ P    AT+               
Sbjct: 1   TNLDSARLRFLIAQQTGVNVKNV-HAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHD 59

Query: 216 DDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEV 265
                  E I    +  A  I   K ++  +   S  D I   +  T  +
Sbjct: 60  PLDADKREEIHQEVKNAAYKIINGKGATNYAIGMSGVDIIEAVLHDTNRI 109

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score = 73.3 bits (179), Expect = 2e-16
 Identities = 13/106 (12%), Positives = 27/106 (25%), Gaps = 5/106 (4%)

Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
             LD  R    + E+L V        +I   H  S     +   V +      +  L   
Sbjct: 3   CNLDSARFRYLMGERLGVHSCSCHGWVIGE-HGDSVPSVWSGMNVAS----IKLHPLDGT 57

Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGT 262
           +               +A    +       A   +   + + ++  
Sbjct: 58  NKDKQDWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAETIMKN 103

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 6e-16
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 1/109 (0%)

Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
             LD  R    ++EKL +  S   +  I G H  S     +   V   + ++   E+  D
Sbjct: 3   CNLDSARFRYLMAEKLGIHPSSC-HGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTD 61

Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEV 265
           +   N + +  +    A  +   K  +  +   S  D I   +     +
Sbjct: 62  NDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRI 110

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.4 bits (174), Expect = 8e-16
 Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 1/108 (0%)

Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
             LD  R    I EKL V  +   +  + G H  S  P  +   V     +     +  D
Sbjct: 3   CNLDSARFRYLIGEKLGVNPTSC-HGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTD 61

Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPE 264
               + + +      G   +   K  ++ +   S  D  R  +     
Sbjct: 62  KNKQHWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKR 109

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score = 71.3 bits (174), Expect = 1e-15
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA 218
           LD  R    I+ +L V + D+ N  + G H  +  P V + TV        +       A
Sbjct: 4   LDAARFRSFIAMELGVSMQDI-NACVLGGHGDAMVPVVKYTTVAGIPISDLL------PA 56

Query: 219 WLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPE 264
               + +   +  GA I++  K  SA  A +S+   + + ++   +
Sbjct: 57  ETIDKLVERTRNGGAEIVEHLKQGSAFYAPASSVVEMVESIVLDRK 102

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 71.3 bits (174), Expect = 1e-15
 Identities = 15/118 (12%), Positives = 35/118 (29%), Gaps = 12/118 (10%)

Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
           T LD  R+   ++E    Q  +V+  +I G+   +  P ++                   
Sbjct: 2   TTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGV------------SF 49

Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEVGSLLIFTPM 274
                 +    +Q  G  +++A+    + + +           L     G   +    
Sbjct: 50  TEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECA 107

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 70.0 bits (171), Expect = 1e-15
 Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 21/162 (12%)

Query: 5   PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP 64
           P ++ V GA G +G  L    A+       + +   ++    A E +    +++   +  
Sbjct: 1   PTKLAVIGA-GAVGSTLAFAAAQ-------RGIAREIVLEDIAKERVEAEVLDMQHGSSF 52

Query: 65  LLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
                +  +D  E C   ++ V+  G  +K G  R +++   V+I KA    L + A PN
Sbjct: 53  YPTVSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVA-PN 111

Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG 166
              +++ NP +    + ++            LT L  N+  G
Sbjct: 112 AIYMLITNPVDIATHVAQK------------LTGLPENQIFG 141

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 70.1 bits (171), Expect = 2e-15
 Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 11/117 (9%)

Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
           T LD  RA   ++E   +  + V   +I G+   +  P ++  T      +  +  L   
Sbjct: 2   TTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGR 61

Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEVGSLLIFTP 273
                      +Q+ G  ++KA+  + + + + +       + L     G   +   
Sbjct: 62  -----------IQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVEC 107

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 69.1 bits (168), Expect = 7e-15
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 1/102 (0%)

Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
           T LD  R    +SEKL V V +V +  I G H  SQ P  +   +      + + +   +
Sbjct: 1   TVLDSIRFRYLLSEKLGVDVKNV-HGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCN 59

Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDW 258
               + + I    +   A I   K ++    A S    +   
Sbjct: 60  FTEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETL 101

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score = 68.6 bits (167), Expect = 8e-15
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA 218
           LD  R    I+ +  V V DV   ++ G H     P    +T++     + +        
Sbjct: 4   LDAARYRTFIAMEAGVSVKDV-QAMLMGGHGDEMVPLPRFSTISGIPVSEFI------AP 56

Query: 219 WLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGT 262
               + +   ++ G  I+   K  SA  A ++A   + + VL  
Sbjct: 57  DRLAQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAVLKD 100

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 68.0 bits (165), Expect = 2e-14
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 3/140 (2%)

Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
           T LD  R    + E  +V   +V +  I G H  ++ P  + A +      K V    ++
Sbjct: 1   TILDTARFRFLLGEYFSVAPQNV-HAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEE 59

Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEVGSLLIFTPMIY 276
                 E I    +  A  I  +K ++    A       R  +     + ++  +   +Y
Sbjct: 60  AQKDL-ERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLY 118

Query: 277 TELVSWLEPWTAIVGHLGLH 296
            E   ++    A++   G+ 
Sbjct: 119 GERDVYIG-VPAVINRNGIR 137

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 66.4 bits (161), Expect = 6e-14
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
           T LD  R    I++        V +V + G H  S+ P  + A +     +   +   K 
Sbjct: 2   TVLDTARLRTLIAQHCGFSPRSV-HVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKC 60

Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDW 258
           D+ +   F     +R A  I  RK ++  + A +  D +   
Sbjct: 61  DSKILENFAEKT-KRAAYEIIERKGATHYAIALAVADIVESI 101

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 64.1 bits (155), Expect = 5e-13
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 2/103 (1%)

Query: 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA 218
           LD  R    +++ L+V   DV    + G H     P V + TVN    +K +++ V  + 
Sbjct: 4   LDSGRFRRYVADALSVSPRDV-QATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEK 62

Query: 219 WLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLG 261
            L  E     +  G  I++     SA  A +++   +    L 
Sbjct: 63  QLE-EIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLN 104

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 62.8 bits (152), Expect = 7e-13
 Identities = 24/139 (17%), Positives = 55/139 (39%), Gaps = 10/139 (7%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
           ++ + G  G++G +    +         +     M+ I    +   G  ++L+    P  
Sbjct: 2   KIGIVGL-GRVGSSTAFALLM-------KGFAREMVLIDVDKKRAEGDALDLIHGT-PFT 52

Query: 67  KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
           +             G ++ ++  G P+K G  R  ++ +N  + K  A  + ++A P+  
Sbjct: 53  RRANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSI 111

Query: 127 VLVVANPANTNALILKEFA 145
           V+VV NP +       + +
Sbjct: 112 VIVVTNPVDVLTYFFLKES 130

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 63.3 bits (153), Expect = 8e-13
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 5/118 (4%)

Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
           T LD +R    + ++ NV    V +  I G H  S++   + AT+ T    +PVR++ K+
Sbjct: 1   TSLDSSRLRVALGKQFNVDPRSV-DAYIMGEHGDSEFAAYSTATIGT----RPVRDVAKE 55

Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEVGSLLIFTPM 274
               + +                 L  A               +   E   L +   M
Sbjct: 56  QGVSDDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYM 113

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 61.4 bits (148), Expect = 3e-12
 Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 6/109 (5%)

Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
           T LD  R    + E  ++    V +    G H +SQ+   +   V      +P+  L   
Sbjct: 2   TLLDTARMQRAVGEAFDLDPRSV-SGYNLGEHGNSQFVAWSTVRVMG----QPIVTLADA 56

Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEV 265
                       ++ G  ++   K  ++   A+SA    +  +      
Sbjct: 57  GDIDLAAIEEEARKGGFTVLNG-KGYTSYGVATSAIRIAKAVMADAHAE 104

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 61.4 bits (148), Expect = 4e-12
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 1/102 (0%)

Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
           T LD  R    I+E +NV    V +  I G H  +++P  +HA +      + V+   + 
Sbjct: 1   TSLDTARFRQSIAEMVNVDARSV-HAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEI 59

Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDW 258
                 +    V+     IIK +  +    A + A       
Sbjct: 60  KEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAIL 101

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 60.6 bits (146), Expect = 6e-12
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 6/104 (5%)

Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
           T LD  R    I++   V + +V    I G H  S  P ++  ++          +  + 
Sbjct: 3   THLDSLRFKVAIAKFFGVHIDEV-RTRIIGEHGDSMVPLLSATSIG-----GIPIQKFER 56

Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVL 260
              L  + I    +     I   K  S    A++  + +R  V 
Sbjct: 57  FKELPIDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVN 100

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 59.7 bits (144), Expect = 8e-12
 Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 10/140 (7%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
           ++   GA G++G                   +  +  +  A +   G  M+L  AA  + 
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLL-------NLDVDEIALVDIAEDLAVGEAMDLAHAAAGID 53

Query: 67  KGVVAT-TDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
           K              G  I V+  G  RK GM R D+  KN  I K  A  + ++ AP  
Sbjct: 54  KYPKIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APES 112

Query: 126 KVLVVANPANTNALILKEFA 145
           K+LVV NP +    I+ + +
Sbjct: 113 KILVVTNPMDVMTYIMWKES 132

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 58.9 bits (142), Expect = 2e-11
 Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 10/139 (7%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
           +V++ G  G +G +    +A+          I     I    +         ++ A    
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQG--------IAEEFVIVDVVKDRTKGDALDLEDAQAFT 57

Query: 67  KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
                 +     C   ++ V+  G P+K G  R D+++KN++I  +    +      +  
Sbjct: 58  APKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGI 116

Query: 127 VLVVANPANTNALILKEFA 145
            LV ANP +       +F+
Sbjct: 117 FLVAANPVDILTYATWKFS 135

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 57.8 bits (139), Expect = 4e-11
 Identities = 20/164 (12%), Positives = 56/164 (34%), Gaps = 25/164 (15%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
           ++ + G  G +G A+   +         Q V    + I      +   +++  DA   L 
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIA-------QGVADDYVFIDANEAKVKADQIDFQDAMANLE 54

Query: 67  KGVVATTDAVEACTGVNIAVMVGGFPR----KEGMERKDVMSKNVSIYKAQASALEQHAA 122
                  +   A    ++ +   G  +        +R   +    S+ ++  + L++   
Sbjct: 55  AHGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG- 113

Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG 166
            +  ++V++NP +    + +             +T    ++ +G
Sbjct: 114 FHGVLVVISNPVDVITALFQH------------VTGFPAHKVIG 145

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 56.6 bits (136), Expect = 1e-10
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
           RV+V GA G +G + V  +         Q +   ++ I        G  M+         
Sbjct: 8   RVVVIGA-GFVGASYVFALMN-------QGIADEIVLIDANESKAIGDAMDFNHGKVFAP 59

Query: 67  KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
           K V       + C   ++ V+  G  +K G  R D++ KN++I+++   ++         
Sbjct: 60  KPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGL 118

Query: 127 VLVVANPANTNALILKEFA 145
            LV  NP +       +F+
Sbjct: 119 FLVATNPVDILTYATWKFS 137

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 54.5 bits (130), Expect = 9e-10
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 3/107 (2%)

Query: 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA 218
           LD +R    IS+KLNV   DV   I+ G H +       + TV     ++ +   +  DA
Sbjct: 3   LDTSRLKYYISQKLNVCPRDVNAHIV-GAHGNKMVLLKRYITVGGIPLQEFINNKLISDA 61

Query: 219 WLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEV 265
            L    I       A  I     S  ++ A++  +    ++    +V
Sbjct: 62  ELE--AIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKV 106

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (126), Expect = 3e-09
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP 64
             ++ V G  G +G A    I    + G    + L    +    + L G  ++L   +  
Sbjct: 19  RCKITVVGV-GDVGMACAISIL---LKGLADELAL----VDADTDKLRGEALDLQHGSLF 70

Query: 65  LLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
           L    +             + ++  G     G  R D++ +NV+I KA    + Q++ P+
Sbjct: 71  LSTPKIVFGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNS-PD 129

Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG 166
           CK++VV NP +    ++ +            ++     R +G
Sbjct: 130 CKIIVVTNPVDILTYVVWK------------ISGFPVGRVIG 159

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 52.4 bits (125), Expect = 5e-09
 Identities = 27/139 (19%), Positives = 60/139 (43%), Gaps = 9/139 (6%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
           ++ V G  GQ+G A    I         + +   +  +    + L G  M+L   +  L 
Sbjct: 22  KITVVGV-GQVGMACAISILG-------KSLADELALVDVLEDKLKGEMMDLQHGSLFLQ 73

Query: 67  KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
              +             I V+  G  ++EG  R +++ +NV+++K     + +++ P+C 
Sbjct: 74  TPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYS-PDCI 132

Query: 127 VLVVANPANTNALILKEFA 145
           ++VV+NP +    +  + +
Sbjct: 133 IIVVSNPVDILTYVTWKLS 151

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 51.9 bits (124), Expect = 5e-09
 Identities = 29/139 (20%), Positives = 59/139 (42%), Gaps = 10/139 (7%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
           +V + GA G +G +    +A       +    L ++D+    E   G  M++     P +
Sbjct: 3   KVAIIGA-GFVGASAAFTMALR-QTANE----LVLIDVFK--EKAIGEAMDINHGL-PFM 53

Query: 67  KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
             +             ++ V+  G  RK G  R D+  KNV I K     + ++   +  
Sbjct: 54  GQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGV 112

Query: 127 VLVVANPANTNALILKEFA 145
           +LVV+NP +    ++++++
Sbjct: 113 ILVVSNPVDIITYMIQKWS 131

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

 Score = 52.0 bits (124), Expect = 7e-09
 Identities = 14/155 (9%), Positives = 40/155 (25%), Gaps = 26/155 (16%)

Query: 14  AGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA 71
            G       P + +G++  ++   I  +   DI    +    + ++ V         V+ 
Sbjct: 8   GGSSY---TPELVKGLLDISEDVRIDEVIFYDIDEEKQ---KIVVDFVKRLVKDRFKVLI 61

Query: 72  TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS---------------- 115
           +     A       +        +G E  + +     +   + +                
Sbjct: 62  SDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVE 121

Query: 116 --ALEQHAAPNCKVLVVANPANTNALILKEFAPSI 148
                     N  ++   NP+      ++ +    
Sbjct: 122 EYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYE 156

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 51.8 bits (123), Expect = 8e-09
 Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 10/127 (7%)

Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
            RLD  R    +SE+ +  V +V    I G H  +Q P  +  +V+             +
Sbjct: 3   GRLDSARFRYVLSEEFDAPVQNV-EGTILGEHGDAQVPVFSKVSVDGT---------DPE 52

Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEVGSLLIFTPMIY 276
            +    E +    Q  A  +  RK ++    A      +   +  T EV    +     +
Sbjct: 53  FSGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEF 112

Query: 277 TELVSWL 283
               +  
Sbjct: 113 GHEDTAF 119

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score = 50.8 bits (121), Expect = 1e-08
 Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 21/161 (13%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
           ++ + GA G +G      +A          V+L +++  P  +AL+   +          
Sbjct: 3   KISIIGA-GFVGSTTAHWLAAK---ELGDIVLLDIVEGVPQGKALD---LYEASPIEGFD 55

Query: 67  KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
             V  T +        ++ V+  G PRK GM R+D++  N  I +A  S     + PN  
Sbjct: 56  VRVTGTNNY-ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAV 113

Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ 167
           +++V NP +    +  E            ++     R +GQ
Sbjct: 114 IIMVNNPLDAMTYLAAE------------VSGFPKERVIGQ 142

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

 Score = 46.5 bits (110), Expect = 5e-07
 Identities = 24/168 (14%), Positives = 51/168 (30%), Gaps = 27/168 (16%)

Query: 3   KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMELVD 60
           K+   +++ G     G    P I   ++   ++  I  L + D     +       ++  
Sbjct: 1   KKSFSIVIAGG----GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFI 56

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKN-------------- 106
                     ATTD  EA T V+  +      +       + +                 
Sbjct: 57  REKAPDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGI 116

Query: 107 ------VSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI 148
                 +         +E+++ P+  +L  +NPA   A   +   P+ 
Sbjct: 117 AYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAAIVAEATRRLRPNS 163

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 45.8 bits (108), Expect = 7e-07
 Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 25/171 (14%)

Query: 1   MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
           + +   +V + G+ G IG  +  + A        +   + + D+         + +  V 
Sbjct: 3   LVQRRKKVAMIGS-GMIGGTMGYLCALR------ELADVVLYDVVKGMPEGKALDLSHVT 55

Query: 61  AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEG-----MERKDVMSKNVSIYKAQAS 115
           +       V A      A TG +  ++  G  +  G       R D++  N  I +    
Sbjct: 56  SVVDTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQ 115

Query: 116 ALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG 166
            ++++  P   ++VV NP +    ++ E             + +  N   G
Sbjct: 116 NIKKYC-PKTFIIVVTNPLDCMVKVMCE------------ASGVPTNMICG 153

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 40.8 bits (95), Expect = 5e-05
 Identities = 19/158 (12%), Positives = 43/158 (27%), Gaps = 26/158 (16%)

Query: 14  AGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKM--ELVDAAFPLLKGV 69
            G       P +  G++    +  +  L ++DIP   E L  V    + +     +   +
Sbjct: 9   GGSSY---TPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEI 65

Query: 70  VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALE----------- 118
             T D   A  G +           E   + + +     +   + +              
Sbjct: 66  HLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPV 125

Query: 119 --------QHAAPNCKVLVVANPANTNALILKEFAPSI 148
                   +   P+  ++   NPA      +  +    
Sbjct: 126 ILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTKQE 163

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 40.1 bits (93), Expect = 6e-05
 Identities = 25/165 (15%), Positives = 62/165 (37%), Gaps = 26/165 (15%)

Query: 7   RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
           ++++ G+ G IG  +  +I +  +        + + DI         +     +      
Sbjct: 5   KIVLVGS-GMIGGVMATLIVQKNL------GDVVLFDIVKNMPHGKALDTSHTNV-MAYS 56

Query: 67  KGVVATTDAVEACTGVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEQHA 121
              V+ ++  +   G ++ ++  GF +  G       R D++  N  I       ++++ 
Sbjct: 57  NCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC 116

Query: 122 APNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG 166
            PN  ++VV NP +    +L +             + +  N+ +G
Sbjct: 117 -PNAFIIVVTNPVDVMVQLLHQ------------HSGVPKNKIIG 148

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 16/161 (9%), Positives = 37/161 (22%), Gaps = 32/161 (19%)

Query: 14  AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--FPLLKGVVA 71
           AG   ++L  +     +  T       +  +    E L+ +                   
Sbjct: 10  AGSAVFSLRLV---SDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEK 66

Query: 72  TTDAVEACTGVNIAVMVGGFPRKEGMERKDV--------------------------MSK 105
           T +  +     +  +          +E+                                
Sbjct: 67  TMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYN 126

Query: 106 NVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP 146
            +  +   A  +E+ + P    L  ANP      ++    P
Sbjct: 127 QLKYFVDIARKIEKLS-PKAWYLQAANPIFEGTTLVTRTVP 166

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 7  RVLVTGAAGQIGYALVPM-IARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP 64
          RV + G  G +G A+      RG V L       L++LD     +     +++ V  A  
Sbjct: 4  RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAA 63

Query: 65 LLKGVVATTDAVEACTGVNI 84
           + G+VA           N+
Sbjct: 64 KVGGIVANNTYPADFIYQNM 83

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)

Query: 1  MAKEPVRVLVTGAAGQIGYALV 22
          MA+   +VLVTG AG IG   V
Sbjct: 1  MAE---KVLVTGGAGYIGSHTV 19

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 1  MAKEPVRVLVTGAAGQIGYALV 22
          +  +P   L+TG AG IG  L+
Sbjct: 12 LPAQPKVWLITGVAGFIGSNLL 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	300
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	100.0
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	100.0
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	100.0
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	100.0
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	100.0
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	100.0
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	100.0
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	99.98
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.98
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	99.98
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.98
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	99.98
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.97
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.97
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.97
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.97
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.97
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.97
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.97
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.96
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.96
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.95
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	99.94
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	99.93
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.93
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	99.92
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.92
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	99.92
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.91
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.91
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.91
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.91
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	99.91
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.9
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	99.9
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	99.9
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	99.9
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.9
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.9
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	99.89
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	99.89
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	99.88
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	99.88
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	99.87
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.82
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.79
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.39
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	99.2
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	99.15
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.06
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	99.02
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.01
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.94
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	98.92
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.89
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	98.88
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.87
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	98.86
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	98.86
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	98.85
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.84
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	98.81
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.79
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	98.75
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	98.75
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.69
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.65
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	98.63
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	98.59
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	98.56
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.52
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	98.51
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	98.49
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.49
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.49
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	98.48
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	98.45
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	98.39
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.33
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	98.23
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.2
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	98.19
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.17
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.05
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	98.02
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	98.02
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	98.02
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.97
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.93
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.92
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.86
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.85
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.85
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	97.8
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.8
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.79
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	97.77
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.77
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.76
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.75
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.74
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.73
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.73
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.72
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.71
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.69
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	97.67
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	97.66
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.66
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.64
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.63
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.62
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.61
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	97.6
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.59
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.59
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.57
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.57
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.57
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.55
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.54
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.53
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.52
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.52
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.51
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.51
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.5
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.5
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.5
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.49
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.45
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.41
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	97.4
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.37
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	97.34
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.34
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.32
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.3
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.28
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.27
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.27
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.23
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.2
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	97.19
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	97.18
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	97.17
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	97.16
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.15
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.12
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	97.09
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	97.07
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.0
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.96
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.86
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.82
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.82
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.82
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.79
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.76
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	96.75
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	96.67
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.64
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.6
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.54
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.52
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.5
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	96.46
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	96.3
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	96.18
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.15
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	95.84
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	95.83
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	95.81
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	95.79
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	95.73
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.72
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.7
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	95.68
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	95.67
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	95.64
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	95.64
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	95.62
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	95.55
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	95.53
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	95.47
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	95.47
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	95.43
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.42
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	95.39
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	95.31
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	95.27
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.26
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.25
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	95.2
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.18
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	95.16
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.14
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.1
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.07
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.05
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	95.02
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.01
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	94.68
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	94.53
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	94.5
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.46
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.42
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.39
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	94.34
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	94.29
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.23
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.11
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	94.06
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.05
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.04
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	94.02
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	94.0
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	93.95
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.9
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	93.82
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	93.75
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	93.71
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	93.65
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	93.65
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.6
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	93.56
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.52
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	93.51
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.38
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	93.37
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	93.36
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	93.33
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.15
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.13
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	93.1
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.07
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	92.94
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	92.82
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	92.81
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	92.79
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.77
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	92.63
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.59
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	92.55
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.5
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.43
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	92.43
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	92.29
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.13
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.12
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	91.99
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	91.88
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	91.78
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	91.75
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.73
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	91.71
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	91.43
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	91.17
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	91.11
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	91.1
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	90.98
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	90.85
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	90.72
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	90.68
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	90.63
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	90.58
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	90.48
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	90.47
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	90.44
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	90.15
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	90.12
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	89.85
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	89.79
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	89.78
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.51
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	89.18
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	88.9
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	88.86
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	88.76
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	88.74
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	88.38
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	88.27
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	88.26
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	87.81
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	87.69
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	87.37
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	87.08
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	86.9
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	86.77
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	86.54
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	86.4
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	86.34
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	85.96
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	85.91
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	85.7
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	85.63
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	85.3
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	85.02
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	84.84
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	84.62
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	84.24
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	83.86
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	83.75
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	83.69
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	83.67
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	83.25
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	82.65
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	82.53
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	82.46
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	81.61
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	81.58
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	80.71

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=100.00  E-value=3.2e-36  Score=251.59  Aligned_cols=153  Identities=44%  Similarity=0.636  Sum_probs=145.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ++.||+|+||+|+||+++++.|+++++||.+++++++|+|+++.++++++.++|++|+++++...+..+++.+++++|+|
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD  102 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD  102 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence            46799999999999999999999999999888899999999988889999999999999888888999999999999999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEee
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL  156 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~  156 (300)
                      +||++||.||+|||+|.|++..|++|+++++++|++++|++++++++|||+|++|++++++++++|++||.++
T Consensus       103 vVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia~k~a~~ip~~~i~~m  175 (175)
T d7mdha1         103 WALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHAL  175 (175)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEEC
T ss_pred             eEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHHHHHCCCCCHHHEeCC
Confidence            9999999999999999999999999999999999999988899999999999999999998899999998764

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=5.6e-35  Score=239.70  Aligned_cols=154  Identities=53%  Similarity=0.856  Sum_probs=142.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      ++|+||+||||+|+||+++++.|+++++|+.+.+.+++|+|++++++++++..+|+.++.++....+..+++.+++++|+
T Consensus         1 s~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDL   80 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTC
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCc
Confidence            46899999998899999999999999999877788999999988888888999999998877778888889999999999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEee
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL  156 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~  156 (300)
                      |+||+++|.|+++|++|.|++..|+++++++++.|.+++|+++++|++|||+|+||++++++++++|++||.++
T Consensus        81 dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v~~k~s~g~P~~~v~~m  154 (154)
T d5mdha1          81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCL  154 (154)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEEC
T ss_pred             eEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHHHHHcCCCCHHHEeCC
Confidence            99999999999999999999999999999999999999987778899999999999999999679999998664

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3e-34  Score=235.32  Aligned_cols=153  Identities=56%  Similarity=0.801  Sum_probs=141.8

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      =++|+||+|+||+|+||+++++.|++++++++.+++.+.|+|.+.+.+++++..+|++++.++....+..+++.+++++|
T Consensus         1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (154)
T d1y7ta1           1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD   80 (154)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccc
Confidence            03578999999889999999999999999987777788899988888889999999999988888889999999999999


Q ss_pred             CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEE
Q 022227           82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNIT  154 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~  154 (300)
                      ||+||++||.+|+||++|.|++..|+++++++++.+.+++|++++++++|||+|++|++++|+++++|++||.
T Consensus        81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a~k~asg~p~~rvi  153 (154)
T d1y7ta1          81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFT  153 (154)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEE
T ss_pred             ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHHHHHcCCCcHHhcc
Confidence            9999999999999999999999999999999999999999878999999999999999999987899999975

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.5e-33  Score=227.29  Aligned_cols=142  Identities=23%  Similarity=0.301  Sum_probs=126.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      .||+|+||+|+||+++++.|+.+++++     |++|+|++..+++++|+++||.|+.. ...+.+++++.+++++|||+|
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~-----el~L~Di~~~~~~~~g~a~Dl~~~~~-~~~~~~i~~~~~~~~~~aDiV   74 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIAD-----EVVFVDIPDKEDDTVGQAADTNHGIA-YDSNTRVRQGGYEDTAGSDVV   74 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCS-----EEEEECCGGGHHHHHHHHHHHHHHHT-TTCCCEEEECCGGGGTTCSEE
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCC-----EEEEEecCCcccccceeecchhhccc-ccCCceEeeCCHHHhhhcCEE
Confidence            399999988999999999999999876     89999987666788999999999663 333444555668999999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEe
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC  155 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~  155 (300)
                      |++||.||++|++|.|++..|+++++++++.|.+++| +++++++|||+|+|++++++. +++|++|+.|
T Consensus        75 vitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p-~~i~ivvtNPvDvmt~~~~k~-sg~~~~rViG  142 (142)
T d1o6za1          75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYISLTTSNPVDLLNRHLYEA-GDRSREQVIG  142 (142)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCS-CCEEEECCSSHHHHHHHHHHH-SSSCGGGEEE
T ss_pred             EEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCC-CceEEEecChHHHHHHHHHHH-HCcCcccccC
Confidence            9999999999999999999999999999999999997 689999999999999999998 8999998754

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=100.00  E-value=1e-32  Score=222.93  Aligned_cols=140  Identities=21%  Similarity=0.363  Sum_probs=124.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-cccEEEeCChhhhcCCCc
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGVN   83 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-~~~v~~~~~~~~a~~~aD   83 (300)
                      |.||+||| +|+||+++++.|+.+++++     ||+|+|++  +++++|+++||+|..... ...+..+ +.+++++|||
T Consensus         1 p~Ki~IIG-aG~VG~~~a~~l~~~~l~~-----ElvL~D~~--~~~~~g~a~Dl~~a~~~~~~~~i~~~-~~~~~~~daD   71 (143)
T d1llda1           1 PTKLAVIG-AGAVGSTLAFAAAQRGIAR-----EIVLEDIA--KERVEAEVLDMQHGSSFYPTVSIDGS-DDPEICRDAD   71 (143)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCCS-----EEEEECSS--HHHHHHHHHHHHHTGGGSTTCEEEEE-SCGGGGTTCS
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhcCCCc-----EEEEEEec--cccchhHHHHHHhccccCCCceeecC-CCHHHhhCCc
Confidence            57999999 6999999999999999876     89999997  478899999999986443 3444444 4578899999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEe
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC  155 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~  155 (300)
                      +||++||.+++++++|.|++..|+++++++++.|++++| ++++|++|||+|+||+++++. +++|++|+.|
T Consensus        72 vVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p-~ai~ivvtNPvDvmt~~~~~~-sg~p~~rViG  141 (143)
T d1llda1          72 MVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAP-NAIYMLITNPVDIATHVAQKL-TGLPENQIFG  141 (143)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSHHHHHHHHHHH-HTCCTTSEEE
T ss_pred             EEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCC-CeEEEEeCCchHHHHHHHHHH-HCCChhhccC
Confidence            999999999999999999999999999999999999997 688999999999999999998 8999999644

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=5.8e-33  Score=225.98  Aligned_cols=145  Identities=21%  Similarity=0.318  Sum_probs=130.0

Q ss_pred             CCC-CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc
Q 022227            1 MAK-EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC   79 (300)
Q Consensus         1 m~~-~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~   79 (300)
                      |++ ...||+||| +|+||+++++.|+..++++     ||+|+|++  +++++|+++||.|+.......+.+.++.++++
T Consensus         1 m~~~~~~KI~IiG-aG~vG~~~a~~l~~~~l~~-----el~L~Di~--~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l   72 (148)
T d1ldna1           1 MKNNGGARVVVIG-AGFVGASYVFALMNQGIAD-----EIVLIDAN--ESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDC   72 (148)
T ss_dssp             CTTTTSCEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSS--HHHHHHHHHHHHHHTTSSSSCCEEEECCGGGT
T ss_pred             CCCCCCCeEEEEC-cCHHHHHHHHHHHhcCCCc-----eEEEEeec--cccccchhccHhhCccccCCCeEEEECCHHHh
Confidence            554 568999999 5999999999999998876     89999997  47889999999998765555555666678999


Q ss_pred             CCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEe
Q 022227           80 TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC  155 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~  155 (300)
                      +|||+||+++|.+++++++|.|++.+|+++++++++.|++++| ++++|++|||+|++|++++++ +++|++|+.|
T Consensus        73 ~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~~ivvtNPvd~~t~~~~k~-sg~p~~rViG  146 (148)
T d1ldna1          73 RDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGF-QGLFLVATNPVDILTYATWKF-SGLPHERVIG  146 (148)
T ss_dssp             TTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTC-CSEEEECSSSHHHHHHHHHHH-HTCCGGGEEE
T ss_pred             ccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCC-CceEEEecCccHHHHHHHHHH-HCcChhheec
Confidence            9999999999999999999999999999999999999999997 689999999999999999999 7999999644

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=100.00  E-value=1.6e-33  Score=237.63  Aligned_cols=131  Identities=40%  Similarity=0.561  Sum_probs=121.6

Q ss_pred             ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHH
Q 022227          157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAII  236 (300)
Q Consensus       157 t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~  236 (300)
                      |.||++||+++||+++|++|++|++++||||||++|||+||+++|    +|+|+.+++.++.|..+++.++++++|++|+
T Consensus         1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGds~vp~~S~a~v----~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii   76 (188)
T d7mdha2           1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKI----DGRPVKEVIKRTKWLEEEFTITVQKRGGALI   76 (188)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEE----TTEEGGGTCCCHHHHHHHHHHHHHTHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCCcEeeeeeccEe----eccchhhcccchhhhHHHHHHHHhhhHHHHH
Confidence            789999999999999999999999988899999999999999999    9999999998888888999999999999999


Q ss_pred             hcCCccccchHHHHHHHHHhhhhccCCC----------cc-ccCCCCCeEEEEeEEE--CCeeeeeee
Q 022227          237 KARKLSSALSAASSACDHIRDWVLGTPE----------VG-SLLIFTPMIYTELVSW--LEPWTAIVG  291 (300)
Q Consensus       237 ~~kg~t~~~s~a~ai~~~~~~~~~~t~~----------~g-~ygi~~~v~~s~Pv~~--~~~~~~~~~  291 (300)
                      +.||.++++|+|.|+++++++|+.++..          .| +||+|+|+|||+||++  ++.|.+|++
T Consensus        77 ~~kg~s~~~s~A~A~~~~~~ai~~~~~~~~~~s~~v~~~g~~YGi~~~v~~s~Pv~ig~~G~~~iv~~  144 (188)
T d7mdha2          77 QKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATD  144 (188)
T ss_dssp             HHTSSCCHHHHHHHHHHHHHHHHSCCCTTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCC
T ss_pred             HhhcccchhhHHHHHHHHHHHHHcCCCCCceEEEEEEeCCCccCCCCCeEEEEeeEECCCccEEEeCC
Confidence            9999999999999999999999876643          25 5999999999999999  478999874

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.9e-32  Score=221.79  Aligned_cols=142  Identities=19%  Similarity=0.340  Sum_probs=124.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc--ccEEE-eCChhhhcCCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL--KGVVA-TTDAVEACTGV   82 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~--~~v~~-~~~~~~a~~~a   82 (300)
                      |||+|+||+|+||+++++.|+.+++++     |++|+|++++.++++|+++|+.|+.....  .++.. +++.+++++||
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~-----el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~a   75 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMK-----DLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDES   75 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCC-----EEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCccc-----ccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccc
Confidence            699999977999999999999998876     89999998766788999999999765433  33333 35568999999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEe
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC  155 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~  155 (300)
                      |+||+|||.||++|++|.|++..|+++++++++.+.+++| ++ ++++|||+|+|++++++. +++|++|+.|
T Consensus        76 DvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~-~~-iivVtNPvD~mt~~~~k~-sg~p~~rViG  145 (145)
T d1hyea1          76 DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICD-TK-IFVITNPVDVMTYKALVD-SKFERNQVFG  145 (145)
T ss_dssp             SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCC-CE-EEECSSSHHHHHHHHHHH-HCCCTTSEEE
T ss_pred             eEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCC-Ce-EEEEcCchHHHHHHHHHH-HCcCcccccC
Confidence            9999999999999999999999999999999999999997 55 567899999999999998 7999999754

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.98  E-value=6.1e-32  Score=218.19  Aligned_cols=140  Identities=26%  Similarity=0.393  Sum_probs=125.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC--cccEEEeCChhhhcCCCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--LKGVVATTDAVEACTGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~--~~~v~~~~~~~~a~~~aD   83 (300)
                      |||+|+| +|+||+++++.|+.+++++     |++|+|++  +++++|+++||+|+....  ..++..+++ +++++|||
T Consensus         1 MKI~IIG-aG~VG~~~a~~l~~~~~~~-----elvL~Di~--~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~ad   71 (142)
T d1ojua1           1 MKLGFVG-AGRVGSTSAFTCLLNLDVD-----EIALVDIA--EDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSE   71 (142)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHSCCS-----EEEEECSS--HHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCS
T ss_pred             CEEEEEC-cCHHHHHHHHHHHhcCcCc-----eEEEEecc--cchhhHHHHHHhhhccccCCCCccccCCC-HHHhcccc
Confidence            6999999 6999999999999998876     89999996  578899999999987433  345555555 68999999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEee
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL  156 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~  156 (300)
                      +||++||.|+++|++|.+++.+|+++++++++.+.+++| +++++++|||+|++|+++++. +++|++|+.|+
T Consensus        72 iVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p-~aivivvtNPvD~~t~~~~k~-sg~p~~rViG~  142 (142)
T d1ojua1          72 IIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-ESKILVVTNPMDVMTYIMWKE-SGKPRNEVFGM  142 (142)
T ss_dssp             EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTST-TCEEEECSSSHHHHHHHHHHH-SCCCTTSEEEC
T ss_pred             EEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCC-CcEEEEecCChHHHHHHHHHH-HCCChhcEecC
Confidence            999999999999999999999999999999999999997 689999999999999999998 79999997653

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.98  E-value=3.6e-32  Score=219.26  Aligned_cols=139  Identities=16%  Similarity=0.341  Sum_probs=124.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+||| +|+||+++++.|+.+++.+     ||+|+|++  +++++++++|+.|+. +...+....++.+++++|||+|
T Consensus         1 mKI~IIG-aG~VG~~~a~~l~~~~l~~-----el~L~Di~--~~~~~g~~~Dl~~~~-~~~~~~~~~~~~~~~~~~adiv   71 (140)
T d1a5za1           1 MKIGIVG-LGRVGSSTAFALLMKGFAR-----EMVLIDVD--KKRAEGDALDLIHGT-PFTRRANIYAGDYADLKGSDVV   71 (140)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSS--HHHHHHHHHHHHHHG-GGSCCCEEEECCGGGGTTCSEE
T ss_pred             CEEEEEC-cCHHHHHHHHHHHhCCCCC-----EEEEEecc--cccccchhccccccc-cccccccccCCcHHHhcCCCEE
Confidence            6999999 6999999999999998865     89999997  478999999999976 3334445555678999999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEe
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC  155 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~  155 (300)
                      |++||.++++|++|.|++.+|+++++++++.|+++|| +++++++|||+|++|+++++. +++|++|+.|
T Consensus        72 vitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p-~aivivvtNPvd~~t~~~~k~-sg~p~~rViG  139 (140)
T d1a5za1          72 IVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP-DSIVIVVTNPVDVLTYFFLKE-SGMDPRKVFG  139 (140)
T ss_dssp             EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHHHHHHHHH-HTCCTTTEEE
T ss_pred             EEecccccCCCcchhhhhccccchHHHHHHHHHhcCC-CcEEEEeCCcHHHHHHHHHHH-HCcCccceeC
Confidence            9999999999999999999999999999999999997 789999999999999999998 7999988643

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.98  E-value=1e-31  Score=220.51  Aligned_cols=142  Identities=20%  Similarity=0.390  Sum_probs=127.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +..||+|+| +|+||+++++.|+.+++++     ||+|+|++  +++++|+++||+|+..+.........+.+++++|||
T Consensus        19 ~~~KV~IIG-aG~VG~~~A~~l~~~~l~~-----ElvLiD~~--~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~ad   90 (160)
T d1i0za1          19 PNNKITVVG-VGQVGMACAISILGKSLAD-----ELALVDVL--EDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSK   90 (160)
T ss_dssp             CSSEEEEEC-CSHHHHHHHHHHHHTTCCS-----EEEEECSC--HHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCS
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHhcCCCc-----EEEEEEec--cchhHHHHHHHhccccccCCCeEEeccchhhccccc
Confidence            457999999 6999999999999999887     89999996  478899999999987554444455667789999999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEe
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC  155 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~  155 (300)
                      +||++||.++++|++|.+++..|+++++++++.|++++| ++++|++|||+|+||+++++. +++|++|+.|
T Consensus        91 iVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p-~aiiivvtNPvDv~t~~~~k~-sglp~~rViG  160 (160)
T d1i0za1          91 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSP-DCIIIVVSNPVDILTYVTWKL-SGLPKHRVIG  160 (160)
T ss_dssp             EEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHHHHHHHHH-HCCCGGGEEE
T ss_pred             EEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEeCCchHHHHHHHHHH-HCcCcccccC
Confidence            999999999999999999999999999999999999997 689999999999999999998 7999998754

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.98  E-value=3.4e-32  Score=220.60  Aligned_cols=141  Identities=13%  Similarity=0.188  Sum_probs=118.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .+||+||| +|+||+++++.|+.+++.+     |++|+|++  +++++|+++||+|+......+..+.++.+++++|||+
T Consensus         1 ~kKI~IIG-aG~VG~~~a~~l~~~~~~~-----elvL~Di~--~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adi   72 (146)
T d1hyha1           1 ARKIGIIG-LGNVGAAVAHGLIAQGVAD-----DYVFIDAN--EAKVKADQIDFQDAMANLEAHGNIVINDWAALADADV   72 (146)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSS--HHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSE
T ss_pred             CCeEEEEC-cCHHHHHHHHHHHhcCCCc-----eEEEEecc--cchhhhHHHhhhccccccCCccceeccCHHHhccccE
Confidence            36999999 6999999999999998876     89999996  5789999999999875443333344456889999999


Q ss_pred             EEEeCCCCC----CCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEe
Q 022227           85 AVMVGGFPR----KEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC  155 (300)
Q Consensus        85 Vi~~ag~~~----~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~  155 (300)
                      ||++||.+|    +++++|.+++..|+++++++++.+++++| ++++|++|||+|+||+++++. +++|++++.|
T Consensus        73 VVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p-~aivivvtNPvD~~t~~~~k~-sg~p~~rViG  145 (146)
T d1hyha1          73 VISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLVVISNPVDVITALFQHV-TGFPAHKVIG  145 (146)
T ss_dssp             EEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHHHHHHHHHH-HCCCGGGEEE
T ss_pred             EEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCC-CeEEEEecCcHHHHHHHHHHH-hCCCccceeC
Confidence            999999987    67889999999999999999999999997 689999999999999999998 7999998643

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.98  E-value=6.9e-32  Score=217.94  Aligned_cols=139  Identities=22%  Similarity=0.334  Sum_probs=116.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||+||| +|+||+++++.|+.+++++     ||+|+|+++  ++++|+++||.|+. +........++.+++++|||+|
T Consensus         2 ~KI~IIG-aG~VG~~~a~~l~~~~l~~-----el~L~D~~~--~~~~g~a~Dl~~~~-~~~~~~~~~~~~~~~~~~adiv   72 (142)
T d1y6ja1           2 SKVAIIG-AGFVGASAAFTMALRQTAN-----ELVLIDVFK--EKAIGEAMDINHGL-PFMGQMSLYAGDYSDVKDCDVI   72 (142)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHHHTTCSS-----EEEEECCC-----CCHHHHHHTTSC-CCTTCEEEC--CGGGGTTCSEE
T ss_pred             CeEEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEeccC--CccceeeeeeccCc-ccCCCeeEeeCcHHHhCCCceE
Confidence            5999999 5999999999999998876     899999974  68899999999976 4444555666778999999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEe
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC  155 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~  155 (300)
                      |++||.+++++++|.+++.+|+++++++++.|.+++| ++++|++|||+|+||+++++. +++|++|+.|
T Consensus        73 vitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p-~ai~ivvtNPvdv~t~~~~k~-sg~p~~rViG  140 (142)
T d1y6ja1          73 VVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYN-HGVILVVSNPVDIITYMIQKW-SGLPVGKVIG  140 (142)
T ss_dssp             EECCCC------CHHHHHHHHHHHHHHHHHHHHHHCC-SCEEEECSSSHHHHHHHHHHH-HTCCTTTEEE
T ss_pred             EEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCC-CceEEEecChHHHHHHHHHHH-HCCCccceec
Confidence            9999999999999999999999999999999999997 689999999999999999998 7999999644

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.6e-31  Score=215.05  Aligned_cols=141  Identities=26%  Similarity=0.365  Sum_probs=121.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~-~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      |||+||||+|+||+++++.|+.+ ++..     ||+|+|++   +.++|+++||.|+.++........++.+++++|||+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~-----el~L~D~~---~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDv   72 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGS-----ELSLYDIA---PVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADV   72 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTC-----EEEEECSS---TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSE
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCc-----EEEEeccc---ccchhHHHHHHCCccccCCcEEEcCCCccccCCCCE
Confidence            69999998899999999998754 5544     89999985   357899999999876655455555667899999999


Q ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH---CCCCCCCcEEe
Q 022227           85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF---APSIPAKNITC  155 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~---~~~~p~~~i~~  155 (300)
                      ||++||.||+++++|.|++..|.+++++++++|.+++| +++++++|||+|+|++++++.   ++.+|++|+.|
T Consensus        73 vvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p-~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG  145 (145)
T d2cmda1          73 VLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCP-KACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG  145 (145)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred             EEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCC-CcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence            99999999999999999999999999999999999997 578999999999999988764   35688888643

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.3e-31  Score=219.81  Aligned_cols=143  Identities=20%  Similarity=0.364  Sum_probs=127.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      ++..||+|+| +|+||+++++.|+..++++     |++|+|++  +++++|+++||+|+...........++.+++++||
T Consensus        17 ~~~~KI~IIG-aG~VG~~~A~~l~~~~l~~-----elvL~D~~--~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~a   88 (159)
T d2ldxa1          17 LSRCKITVVG-VGDVGMACAISILLKGLAD-----ELALVDAD--TDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANS   88 (159)
T ss_dssp             CCCCEEEEEC-CSHHHHHHHHHHHTTTSCS-----EEEEECSC--HHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTE
T ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEeCC--chhhhccHHHHhCcchhcCCCeEEeccchhhhccc
Confidence            3457999999 6999999999999998876     89999996  47899999999998755444444444568999999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEe
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC  155 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~  155 (300)
                      |+||++||.+++++++|.+++..|+++++++++.+++++| +++++++|||+|+|++++++. +++|++|+.|
T Consensus        89 divvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p-~~ivivvtNPvDv~t~~~~k~-sg~p~~rV~G  159 (159)
T d2ldxa1          89 KLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSP-DCKIIVVTNPVDILTYVVWKI-SGFPVGRVIG  159 (159)
T ss_dssp             EEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHST-TCEEEECSSSHHHHHHHHHHH-HCSCTTTEEE
T ss_pred             cEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCC-CeEEEEeCCcHHHHHHHHHHH-HCcCcccccC
Confidence            9999999999999999999999999999999999999998 689999999999999999998 8999999754

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.97  E-value=2.8e-31  Score=214.58  Aligned_cols=140  Identities=22%  Similarity=0.391  Sum_probs=123.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC--CcccEEEeCChhhhcCCCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~--~~~~v~~~~~~~~a~~~aD   83 (300)
                      |||+||| +|+||+++++.|+.+++++     |++|+|+++  +++++.++|+.|....  ...+++.+ +.+++++|||
T Consensus         1 mKI~IIG-aG~VG~~la~~l~~~~l~~-----el~L~Di~~--~~~~~~~~d~~~~~~~~~~~~~i~~~-~~~~~~~dad   71 (142)
T d1guza1           1 MKITVIG-AGNVGATTAFRLAEKQLAR-----ELVLLDVVE--GIPQGKALDMYESGPVGLFDTKVTGS-NDYADTANSD   71 (142)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCCS-----EEEEECSSS--SHHHHHHHHHHTTHHHHTCCCEEEEE-SCGGGGTTCS
T ss_pred             CEEEEEC-cCHHHHHHHHHHHhCCCCc-----eEEEecccc--ccchhhhhhhhcccchhcccceEEec-CCHHHhcCCe
Confidence            6999999 6999999999999998876     899999975  6788899999887632  23445444 4578999999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEee
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL  156 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~  156 (300)
                      +||++||.|+++|++|.+++.+|+++++++++.+.++|| +++++++|||+|++++++++. +++|++|+.|+
T Consensus        72 vvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p-~aivivvtNPvd~~~~~~~~~-sg~p~~rviG~  142 (142)
T d1guza1          72 IVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLDIMTHVAWVR-SGLPKERVIGM  142 (142)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCS-SCEEEECCSSHHHHHHHHHHH-HCSCGGGEEEE
T ss_pred             EEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCC-CeEEEEecCChHHHHHHHHHH-hCCChHhEeeC
Confidence            999999999999999999999999999999999999997 789999999999999999998 79999997653

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.97  E-value=4.2e-31  Score=214.20  Aligned_cols=140  Identities=20%  Similarity=0.340  Sum_probs=114.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .+||+|+| +|+||+++++.|+++++.+     ||+|+|++  +++++|+++||+|+............ .+++++|||+
T Consensus         5 ~~KI~IIG-aG~VG~~~A~~l~~~~~~~-----elvL~D~~--~~~~~g~a~Dl~~a~~~~~~~~~~~~-d~~~~~~adi   75 (146)
T d1ez4a1           5 HQKVVLVG-DGAVGSSYAFAMAQQGIAE-----EFVIVDVV--KDRTKGDALDLEDAQAFTAPKKIYSG-EYSDCKDADL   75 (146)
T ss_dssp             BCEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSS--HHHHHHHHHHHHGGGGGSCCCEEEEC-CGGGGTTCSE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhcCCCc-----EEEEeecc--cchhHHHHHHHhccccccCCceEeec-cHHHhccccE
Confidence            57999999 6999999999999998865     89999997  47889999999998754444444444 4688999999


Q ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEe
Q 022227           85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC  155 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~  155 (300)
                      ||+++|.+++++++|.+++..|+++++++++.|.+++| +++++++|||+|++++++++. +++|++++.|
T Consensus        76 vvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p-~aivivvtNPvdv~t~~~~k~-sg~p~~rViG  144 (146)
T d1ez4a1          76 VVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGF-DGIFLVAANPVDILTYATWKF-SGFPKERVIG  144 (146)
T ss_dssp             EEECCCC----------CHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHHHHHHHHHH-HCCCGGGEEE
T ss_pred             EEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCC-CcEEEEeCCccHHHHHHHHHH-HCcCccceec
Confidence            99999999999999999999999999999999999997 679999999999999999998 7999998644

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=1.8e-30  Score=209.93  Aligned_cols=140  Identities=26%  Similarity=0.423  Sum_probs=120.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc-ccEEEeCChhhhcCCCcE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL-KGVVATTDAVEACTGVNI   84 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~-~~v~~~~~~~~a~~~aDv   84 (300)
                      .||+|+||+|+||+++++.|+.+++++     |++|+|+++    .+++++|+.|...... ..+..+++.+++++|||+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~-----elvLiDi~~----~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDi   71 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVS-----RLTLYDIAH----TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDV   71 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCS-----EEEEEESSS----HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSE
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccc-----eEEEEeccc----cchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCE
Confidence            399999977999999999999999877     899999963    4678899999875443 333445677899999999


Q ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHH---HCCCCCCCcEEe
Q 022227           85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKE---FAPSIPAKNITC  155 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~---~~~~~p~~~i~~  155 (300)
                      ||++||.||++|++|.+++..|+++++++++.|.+++| +++++++|||+|++++++++   ..+++|++|+.|
T Consensus        72 vVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p-~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG  144 (144)
T d1mlda1          72 VVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP-DAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG  144 (144)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred             EEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCC-CeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence            99999999999999999999999999999999999997 68999999999998887753   336799998644

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.97  E-value=1.1e-29  Score=207.69  Aligned_cols=145  Identities=19%  Similarity=0.283  Sum_probs=126.8

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC--CcccEEEeCChhhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEA   78 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~--~~~~v~~~~~~~~a   78 (300)
                      |-++.+||+||| +|.||+++++.|.+.++ .     |++|+|+++  ++++|+++|+.|....  ....+..+++.+++
T Consensus         3 ~~~k~~KI~IIG-aG~VG~~lA~~l~~~~~-~-----el~L~D~~~--~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~   73 (154)
T d1pzga1           3 LVQRRKKVAMIG-SGMIGGTMGYLCALREL-A-----DVVLYDVVK--GMPEGKALDLSHVTSVVDTNVSVRAEYSYEAA   73 (154)
T ss_dssp             CCSCCCEEEEEC-CSHHHHHHHHHHHHHTC-C-----EEEEECSSS--SHHHHHHHHHHHHHHHTTCCCCEEEECSHHHH
T ss_pred             cccCCCcEEEEC-CCHHHHHHHHHHHhCCC-c-----eEEEEEecc--ccchhHHHHHhhhccccCCeeEEeccCchhhh
Confidence            335678999999 59999999999988775 2     899999975  6889999999997633  33456667788889


Q ss_pred             cCCCcEEEEeCCCCCCCCC-----cHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE
Q 022227           79 CTGVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI  153 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~~g~-----~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i  153 (300)
                      ++|||+||+++|.++++|+     +|.+++..|+++++++++.+.+++| +++++++|||+|++|+++++. +++|++++
T Consensus        74 ~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p-~aiviivsNPvd~lt~~~~~~-sg~p~~rV  151 (154)
T d1pzga1          74 LTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCP-KTFIIVVTNPLDCMVKVMCEA-SGVPTNMI  151 (154)
T ss_dssp             HTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEECCSSHHHHHHHHHHH-HCCCGGGE
T ss_pred             hcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCC-CcEEEEeCCcHHHHHHHHHHH-hCcChhcE
Confidence            9999999999999999985     8999999999999999999999998 689999999999999999998 79999997


Q ss_pred             Eee
Q 022227          154 TCL  156 (300)
Q Consensus       154 ~~~  156 (300)
                      .|+
T Consensus       152 iG~  154 (154)
T d1pzga1         152 CGM  154 (154)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            663

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.97  E-value=2.6e-30  Score=208.78  Aligned_cols=138  Identities=23%  Similarity=0.348  Sum_probs=113.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC--cccEEEeCChhhhcCCCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--LKGVVATTDAVEACTGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~--~~~v~~~~~~~~a~~~aD   83 (300)
                      +||+||| +|.||+++++.|+++++.      +++|+|+++  +++++.++|+.|+....  ..+++.+.+ +++++|+|
T Consensus         2 ~KI~IIG-aG~VG~~~A~~l~~~~l~------dl~l~D~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~~d-~~~~~~ad   71 (142)
T d1uxja1           2 KKISIIG-AGFVGSTTAHWLAAKELG------DIVLLDIVE--GVPQGKALDLYEASPIEGFDVRVTGTNN-YADTANSD   71 (142)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCS------EEEEECSSS--SHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCS
T ss_pred             CeEEEEC-CCHHHHHHHHHHHhCCcc------eEEEEeecc--ccchhHHHHhhccccccCCCCEEEecCc-HHHhcCCC
Confidence            6999999 699999999999988762      799999974  68899999999986432  344555554 67899999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEe
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC  155 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~  155 (300)
                      +||++||.|++++++|.+++..|+++++++++.+.+++| +++++++|||+|+|++++++. +++|++|+.|
T Consensus        72 vvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p-~aivivvtNPvDv~t~~~~~~-sglp~~rViG  141 (142)
T d1uxja1          72 VIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSP-NAVIIMVNNPLDAMTYLAAEV-SGFPKERVIG  141 (142)
T ss_dssp             EEEECCSCC---------CHHHHHHHHHHHHHHHGGGCT-TCEEEECSSSHHHHHHHHHHH-HCCCGGGEEE
T ss_pred             EEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCC-CceEEEeCCchHHHHHHHHHH-HCcCcccccC
Confidence            999999999999999999999999999999999999997 689999999999999999998 7999999754

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.96  E-value=1.6e-29  Score=205.56  Aligned_cols=139  Identities=19%  Similarity=0.404  Sum_probs=120.6

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-Cc-ccEEEeCChhhhcCCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LL-KGVVATTDAVEACTGV   82 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-~~-~~v~~~~~~~~a~~~a   82 (300)
                      ..||+|+| +|+||+++++.|+++++ .     |++|+|+++  ++++|+++|++|.... .. ..+.. ++.+++++||
T Consensus         3 ~~KI~IIG-aG~VG~~~a~~l~~~~l-~-----el~L~Di~~--~~~~g~a~Dl~~~~~~~~~~~~v~~-~~~~~~~~~a   72 (150)
T d1t2da1           3 KAKIVLVG-SGMIGGVMATLIVQKNL-G-----DVVLFDIVK--NMPHGKALDTSHTNVMAYSNCKVSG-SNTYDDLAGA   72 (150)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTC-C-----EEEEECSSS--SHHHHHHHHHHTHHHHHTCCCCEEE-ECCGGGGTTC
T ss_pred             CCeEEEEC-CCHHHHHHHHHHHhCCC-C-----eEEEEeccC--CcceeeecchhhhccccCCCcEEEe-cccccccCCC
Confidence            46999999 69999999998888775 3     899999974  6889999999997532 22 23333 4668999999


Q ss_pred             cEEEEeCCCCCCCCCc-----HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEe
Q 022227           83 NIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC  155 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~-----r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~  155 (300)
                      |+||+++|.++++|++     |.+++..|+++++++++.++++|| +++++++|||+|+|++++++. +++|++|+.|
T Consensus        73 dvvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p-~aivivvtNPvD~~t~~~~~~-sg~p~~rViG  148 (150)
T d1t2da1          73 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP-NAFIIVVTNPVDVMVQLLHQH-SGVPKNKIIG  148 (150)
T ss_dssp             SEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSSHHHHHHHHHHH-HCCCGGGEEE
T ss_pred             cEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCC-CeEEEEecCchHHHHHHHHHH-HCCCchheec
Confidence            9999999999999875     999999999999999999999997 789999999999999999998 7999999644

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.96  E-value=1.1e-29  Score=212.87  Aligned_cols=131  Identities=60%  Similarity=0.881  Sum_probs=115.6

Q ss_pred             ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcc----cccchhHHHHHHHhHH
Q 022227          157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD----DAWLNGEFITTVQQRG  232 (300)
Q Consensus       157 t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~----~~~~~~~~~~~v~~~~  232 (300)
                      |.||++|||+++|+++|++|.+|++++||||||++|||+||+++|    +|+|+.+++.+    +.|..+++.+++++++
T Consensus         1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~s~vp~~S~a~v----~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   76 (179)
T d5mdha2           1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKV----KLQAKEVGVYEAVKDDSWLKGEFITTVQQRG   76 (179)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEE----ECSSCEEEHHHHHCCHHHHHTHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCCcccccchhcee----cCcchhhhhhhccccchhhHHHHHHHHHhcc
Confidence            789999999999999999999999988899999999999999999    99998776543    3455678999999999


Q ss_pred             HHHHhcCCccccchHHHHHHHHHhhhhccCCC----------cc-ccCCCCCeEEEEeEEE-CCeeeeeee
Q 022227          233 AAIIKARKLSSALSAASSACDHIRDWVLGTPE----------VG-SLLIFTPMIYTELVSW-LEPWTAIVG  291 (300)
Q Consensus       233 ~~i~~~kg~t~~~s~a~ai~~~~~~~~~~t~~----------~g-~ygi~~~v~~s~Pv~~-~~~~~~~~~  291 (300)
                      ++|++.||.++++++|.|+++++++|+.....          .| +||+|+|+|||+||++ .+-|..|.+
T Consensus        77 ~~i~~~~~~ss~~~~a~a~~~~~~~i~~~~~~~~~~s~~v~~~g~~yGi~~~v~~s~P~~lg~~Gv~~v~~  147 (179)
T d5mdha2          77 AAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEG  147 (179)
T ss_dssp             HHHHHHHSSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCSSSCCSSCEEEEEEEEETTEEEECCC
T ss_pred             HhhhhccCcchHHHHHHHHHHHHHHHHhhcccCCceeEEEEccCcccCCccceEEeeeEEEcCCcEEEEeC
Confidence            99999999999999999999999998754322          24 8999999999999999 588888864

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=2.1e-28  Score=203.91  Aligned_cols=130  Identities=45%  Similarity=0.684  Sum_probs=112.0

Q ss_pred             eehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHH
Q 022227          156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAI  235 (300)
Q Consensus       156 ~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i  235 (300)
                      +|.||++||++++|+++|++|.+|++++||||||++|+|+||++++    +|+|+.++..+..+. .+..++.++++.++
T Consensus         1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~s~vp~~S~~~v----~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~   75 (173)
T d1y7ta2           1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEV----DGRPALELVDMEWYE-KVFIPTVAQRGAAI   75 (173)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEE----TTEEGGGTSCHHHHH-HTHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCccEEeeeeeeeE----cCccHHHhccccccc-chhhhhhhhhHHHH
Confidence            5899999999999999999999999998899999999999999999    999999988765543 44555566667777


Q ss_pred             HhcCCccccchHHHHHHHHHhhhhccC----------CCccccCCCCCeEEEEeEEE-CCeeeeee
Q 022227          236 IKARKLSSALSAASSACDHIRDWVLGT----------PEVGSLLIFTPMIYTELVSW-LEPWTAIV  290 (300)
Q Consensus       236 ~~~kg~t~~~s~a~ai~~~~~~~~~~t----------~~~g~ygi~~~v~~s~Pv~~-~~~~~~~~  290 (300)
                      +..++.++++++|.++++++++|..++          ..+|+||+|++++||+||++ ++.|.+|.
T Consensus        76 ~~~~~~~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~v~~~g~YGi~~~~~~s~Pvi~~~gg~~~v~  141 (173)
T d1y7ta2          76 IQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVE  141 (173)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHHHTBCCTTCCEEEEEECSSGGGCCTTSEEEEEEEEETTEEEECC
T ss_pred             HHHhccCchhhHHHHHHHHHHHHhcccCCCCceeeEEEeccccCCccceeEeeeEEEeCCeEEEec
Confidence            777777777899999999999877643          33499999999999999999 78999886

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=99.94  E-value=5.2e-27  Score=194.95  Aligned_cols=130  Identities=45%  Similarity=0.716  Sum_probs=114.6

Q ss_pred             hhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHh
Q 022227          158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK  237 (300)
Q Consensus       158 ~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~  237 (300)
                      +||++|+++++|+++|++|++|++++||||||++++|+||++++    +|.|+.++..++.|..+++.+.+++++.++..
T Consensus         2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~s~vp~~S~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (171)
T d1b8pa2           2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQI----DGASVKDMINDDAWNRDTFLPTVGKRGAAIID   77 (171)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSCEE----TTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHH
T ss_pred             cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCCcEEeeeeccee----ecccchhhhhhhcchhhhHHHHHHHHHHHHHH
Confidence            69999999999999999999999988899999999999999999    99999999888777777888889999999999


Q ss_pred             cCCccccchHHHHHHHHHhhhhcc---------CCCccccCCCCCeEEEEeEEE-CCeeeeeee
Q 022227          238 ARKLSSALSAASSACDHIRDWVLG---------TPEVGSLLIFTPMIYTELVSW-LEPWTAIVG  291 (300)
Q Consensus       238 ~kg~t~~~s~a~ai~~~~~~~~~~---------t~~~g~ygi~~~v~~s~Pv~~-~~~~~~~~~  291 (300)
                      .++.+++.+++.+++.++.+|..+         +...|+||+|+|+|||+||++ ++-|..|.+
T Consensus        78 ~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~s~~~~g~yg~~~gi~fS~Pv~ig~~gve~v~~  141 (171)
T d1b8pa2          78 ARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQG  141 (171)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHHHCCTTCCEEEEEECCSGGGCCTTCEEEEEEEEETTEEEECCC
T ss_pred             HHhhhhhhhhhHHHHHHHHHHHhCCCccceeEEEEeccccccccceEEEEEEEEeCCeEEEEeC
Confidence            999888877777888888776543         334599999999999999999 688888763

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.93  E-value=4.1e-26  Score=189.41  Aligned_cols=127  Identities=21%  Similarity=0.152  Sum_probs=108.0

Q ss_pred             ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhccc------ccchhHHHHHHHh
Q 022227          157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD------AWLNGEFITTVQQ  230 (300)
Q Consensus       157 t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~------~~~~~~~~~~v~~  230 (300)
                      |.||++|+++++|+++|+++.+|+.+ ||||||++|||+||+++|    +|.|+.+++..+      .+..+++.+++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~~~vp~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~   75 (170)
T d1llda2           1 TNLDSARLRFLIAQQTGVNVKNVHAY-IAGEHGDSEVPLWESATI----GGVPMSDWTPLPGHDPLDADKREEIHQEVKN   75 (170)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECC-EEBSSSTTCEECTTSCEE----TTEEGGGCCCCTTCCCCCHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEE-EEcCCCCCcccchhhccc----CCCchhhhcccccccccchhhHHHHHHHHhh
Confidence            68999999999999999999999987 599999999999999999    999999887532      2345789999999


Q ss_pred             HHHHHHhcCCccccchHHHHHHHHHhhhhcc--------CCCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          231 RGAAIIKARKLSSALSAASSACDHIRDWVLG--------TPEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       231 ~~~~i~~~kg~t~~~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      +|++|+++||.|+ +++|.++++++++++.+        ++..|+||++ ++|||+||++  ++.+++++
T Consensus        76 ~g~~i~~~kg~t~-~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~-~i~~s~P~~lg~~Gv~~i~~  143 (170)
T d1llda2          76 AAYKIINGKGATN-YAIGMSGVDIIEAVLHDTNRILPVSSMLKDFHGIS-DICMSVPTLLNRQGVNNTIN  143 (170)
T ss_dssp             HHHHHHTSCCSCC-HHHHHHHHHHHHHHHTTCCEEEEEEEECSSBTTBC-SSEEEEEEEEETTEEECCSC
T ss_pred             hhhHHHhhhccch-hhhHHHHHHHHHHHHcCCCceeeeeccccCccCCC-CeeEeeccEEcCCeeEEEec
Confidence            9999999999776 47888888888887644        3455889985 9999999999  57676654

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.93  E-value=6.1e-26  Score=187.02  Aligned_cols=129  Identities=16%  Similarity=0.108  Sum_probs=106.3

Q ss_pred             eehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHH
Q 022227          156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAI  235 (300)
Q Consensus       156 ~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i  235 (300)
                      ||.||++||++++|+++|++|.+|+.+ |||+||++|||+||++++    +|+|+.+++.+++|..+++.+++++++++|
T Consensus         1 GT~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~~~vp~~s~~~v----~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i   75 (163)
T d1hyha2           1 GTLLDTARMQRAVGEAFDLDPRSVSGY-NLGEHGNSQFVAWSTVRV----MGQPIVTLADAGDIDLAAIEEEARKGGFTV   75 (163)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCGGGCBCC-EEBCTTTTCEECTTTCEE----TTEEGGGC-----CCHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHhCcCHHHeEEE-EEcCCCCcCccceecccc----CCchHHHHhccccchHHHHHHHHhhhHHHH
Confidence            689999999999999999999999988 589999999999999999    999999999888888889999999999999


Q ss_pred             HhcCCccccchHHHHHHHHHhhhhccCCC---ccccCCCCCeEEEEeEEEC-Ceeeeee
Q 022227          236 IKARKLSSALSAASSACDHIRDWVLGTPE---VGSLLIFTPMIYTELVSWL-EPWTAIV  290 (300)
Q Consensus       236 ~~~kg~t~~~s~a~ai~~~~~~~~~~t~~---~g~ygi~~~v~~s~Pv~~~-~~~~~~~  290 (300)
                      ++.||.+++ ++|.++.++++++......   .+.|..++++|||+||+++ +-|..|.
T Consensus        76 ~~~kg~~~~-~~a~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~Pv~ig~~Gv~~v~  133 (163)
T d1hyha2          76 LNGKGYTSY-GVATSAIRIAKAVMADAHAELVVSNRRDDMGMYLSYPAIIGRDGVLAET  133 (163)
T ss_dssp             HHHHSSCCH-HHHHHHHHHHHHHHTTCCEEEEEEEECTTTCSEEEEEEEEETTEEEEEC
T ss_pred             HHHHHhHHH-hHHHHhhHHHHHhcCCccceeeeceecCCcceEEEeEEEEcCCeEEEEe
Confidence            999997665 7787888888887655432   2567777899999999993 3354443

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.92  E-value=7.3e-26  Score=188.07  Aligned_cols=131  Identities=19%  Similarity=0.125  Sum_probs=110.2

Q ss_pred             eeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccc-----cchhHHHHHHH
Q 022227          155 CLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA-----WLNGEFITTVQ  229 (300)
Q Consensus       155 ~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~-----~~~~~~~~~v~  229 (300)
                      +||.||++|+++++|+++|+++.+|+.+ |||+||++|||+||+++|    +|.|+.+++.+..     +..+++.++++
T Consensus         1 ~GT~LDs~R~~~~lA~~lgv~~~~V~~~-ViG~Hg~~~vp~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~i~~~~~   75 (172)
T d1i0za2           1 SGCNLDSARFRYLMAEKLGIHPSSCHGW-ILGEHGDSSVAVWSGVNV----AGVSLQELNPEMGTDNDSENWKEVHKMVV   75 (172)
T ss_dssp             CTTHHHHHHHHHHHHHHHTSCGGGCBCC-EEBCSSTTCEECGGGCEE----TTEEHHHHCTTTTSSSCSSCTHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHhCcCHHHceEE-EEccCCCcccccHhhcee----CCeeHHHhhhhhccchhHHHHHHHHHHhc
Confidence            5799999999999999999999999877 599999999999999999    9999999876532     22467899999


Q ss_pred             hHHHHHHhcCCccccchHHHHHHHHHhhhhc--------cCCCccccCCCCCeEEEEeEEEC-Ceeeeeee
Q 022227          230 QRGAAIIKARKLSSALSAASSACDHIRDWVL--------GTPEVGSLLIFTPMIYTELVSWL-EPWTAIVG  291 (300)
Q Consensus       230 ~~~~~i~~~kg~t~~~s~a~ai~~~~~~~~~--------~t~~~g~ygi~~~v~~s~Pv~~~-~~~~~~~~  291 (300)
                      +++.++++.++.+.+ ++|.++++++.+++.        +....|+||+++++|||+||+++ +-|..|..
T Consensus        76 ~~~~~~~~~~~~s~~-a~a~~~~~~~~~~~~~~~~v~~~~~~~~g~YGi~~~i~~s~Pv~lg~~Gv~~v~~  145 (172)
T d1i0za2          76 ESAYEVIKLKGYTNW-AIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVIN  145 (172)
T ss_dssp             HHHHHHHHHHSSCCH-HHHHHHHHHHHHHHTTCCEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECC
T ss_pred             cceEEeeecccccch-HHHHHHHHHHHHHhcCCCcccccceeccCcCCCcCCEEEEEEEEecCCcEEEEeC
Confidence            999999999986654 777788888877653        33456999999999999999993 44766654

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.92  E-value=4.6e-26  Score=188.66  Aligned_cols=129  Identities=20%  Similarity=0.195  Sum_probs=105.8

Q ss_pred             eehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHH
Q 022227          156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAI  235 (300)
Q Consensus       156 ~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i  235 (300)
                      ||.||++||++++|+++|+++.+|+.++ |||||++|||+||++++    +|+|+.++.....+..+++.++++++++++
T Consensus         2 GT~LDs~R~~~~lA~~l~v~~~~V~~~V-iG~Hg~~~vp~~s~~~i----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (168)
T d1hyea2           2 GTHLDSLRFKVAIAKFFGVHIDEVRTRI-IGEHGDSMVPLLSATSI----GGIPIQKFERFKELPIDEIIEDVKTKGEQI   76 (168)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCGGGEECCE-EECSSTTEEECGGGCEE----TTEEGGGCGGGGGCCHHHHHHHHHHHTTSC
T ss_pred             CchHHHHHHHHHHHHHHCcCHHHeEEEE-EcCCCCccccchhheeE----CCEecccccccchhhhhhHHHHHhhhHHHH
Confidence            6899999999999999999999999875 89999999999999999    999999988766666788999999999999


Q ss_pred             HhcCCccccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          236 IKARKLSSALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       236 ~~~kg~t~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      ++.|+.+++ ++|.+++.+++++....        ...|+|+.++|+|||+||++  +++|..++
T Consensus        77 ~~~k~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~Pv~lg~~Gv~~i~~  140 (168)
T d1hyea2          77 IRLKGGSEF-GPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVS  140 (168)
T ss_dssp             CC------C-CHHHHHHHHHHHHHTTCCEEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECC
T ss_pred             HHhccCccc-cchhhhhHHHHhhhccCCCeEEEEEEEecccCCcCCEEEeeceEEcCCcEEEEec
Confidence            999887665 66667888887766433        23488888889999999999  57777765

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.92  E-value=2.5e-25  Score=184.39  Aligned_cols=126  Identities=25%  Similarity=0.205  Sum_probs=103.3

Q ss_pred             ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccc-----cchhHHHHHHHhH
Q 022227          157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA-----WLNGEFITTVQQR  231 (300)
Q Consensus       157 t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~-----~~~~~~~~~v~~~  231 (300)
                      |.||++|+++++|+++|++|.+|+.++ |||||++|+|+||++++    +|.|+.+++.+..     +..+++.+++++.
T Consensus         1 T~LDs~R~~~~la~~lgv~~~~V~~~V-iG~Hg~t~vp~~s~~~i----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (169)
T d1y6ja2           1 TVLDSIRFRYLLSEKLGVDVKNVHGYI-IGEHGDSQLPLWSCTHI----AGKNINEYIDDPKCNFTEEDKKKIAEDVKTA   75 (169)
T ss_dssp             THHHHHHHHHHHHTTTTCCTTTEECCE-EBCSSSSCEECCTTCEE----TTBCSCCC-----------CCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHceEEE-EccCCCCCccCeeeccc----CchhHHHHHHHhhhhhhHHHHHHHHHHHhhh
Confidence            689999999999999999999999885 89999999999999999    9999999886642     3347899999999


Q ss_pred             HHHHHhcCCccccchHHHHHHHHHhhhhc--------cCCCccccCCCCCeEEEEeEEE--CCeeeee
Q 022227          232 GAAIIKARKLSSALSAASSACDHIRDWVL--------GTPEVGSLLIFTPMIYTELVSW--LEPWTAI  289 (300)
Q Consensus       232 ~~~i~~~kg~t~~~s~a~ai~~~~~~~~~--------~t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~  289 (300)
                      ++++++.++.+++ ++|.++++++++++.        +++.+|+||++ |+|||+||++  ++.+..+
T Consensus        76 ~~~i~~~~~s~~~-a~a~~~~~~~~~i~~~~~~~~~~~~~~~g~yg~~-~i~~s~Pv~lg~~Gv~~i~  141 (169)
T d1y6ja2          76 GATIIKNKGATYY-GIAVSINTIVETLLKNQNTIRTVGTVINGMYGIE-DVAISLPSIVNSEGVQEVL  141 (169)
T ss_dssp             HHHHHHHTSCCCH-HHHHHHHHHHHHHHHTCCCEECCEEEECSBTTBC-SEEEECCEEEETTEEEECC
T ss_pred             hhhhhhhhhhhhh-HHHHHHHHHHHHhccCCCCceeeeeeeccccCCc-ccceeeeeEEcCCcEEEEe
Confidence            9999999987664 777788888877553        34456999997 9999999999  4544443

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.91  E-value=3.7e-25  Score=182.36  Aligned_cols=125  Identities=22%  Similarity=0.249  Sum_probs=101.7

Q ss_pred             hhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHh
Q 022227          158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK  237 (300)
Q Consensus       158 ~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~  237 (300)
                      .||++||++++|+++|+++.+|++++ |||||++|||+||++++    +|+|+.+++.++.  .+++.++++++|++|++
T Consensus         3 ~LDs~R~~~~lA~~l~v~~~~V~~~V-iG~Hg~s~vp~~s~~~i----~g~~~~~~~~~~~--~~~~~~~v~~~g~~ii~   75 (163)
T d1guza2           3 VLDAARFRSFIAMELGVSMQDINACV-LGGHGDAMVPVVKYTTV----AGIPISDLLPAET--IDKLVERTRNGGAEIVE   75 (163)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCE-EECSGGGEEECGGGCEE----TTEEHHHHSCHHH--HHHHHHHHHTHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEE-EcCCCCCcccCHhhccc----CCccccccCCHHH--HHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999885 89999999999999999    9999999875443  46899999999999998


Q ss_pred             cCCc-cccchHHHHHHHHHhhhhcc--------CCCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          238 ARKL-SSALSAASSACDHIRDWVLG--------TPEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       238 ~kg~-t~~~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      .+|. +++++++.++++++++++..        +...|+||++ |+|||+||++  +++|..+.
T Consensus        76 ~~~kgsa~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~-~~~~s~P~~lg~~Gv~~i~~  138 (163)
T d1guza2          76 HLKQGSAFYAPASSVVEMVESIVLDRKRVLPCAVGLEGQYGID-KTFVGVPVKLGRNGVEQIYE  138 (163)
T ss_dssp             HHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECC
T ss_pred             HhcCCCcchhHHHHHHHHHHheeccCCCEEEEeeeeccccCCC-CcEEEEeeEEcCCeeEEEec
Confidence            6443 33345666666655444322        2334899995 9999999999  67888775

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=6e-25  Score=182.33  Aligned_cols=130  Identities=18%  Similarity=0.091  Sum_probs=107.2

Q ss_pred             eeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccc-----cchhHHHHHHH
Q 022227          155 CLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA-----WLNGEFITTVQ  229 (300)
Q Consensus       155 ~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~-----~~~~~~~~~v~  229 (300)
                      +||.||++|+++++|+++|++|.+|+.+ |||+||++|+|+||+++|    +|.|+.+++.+..     +..+++.++.+
T Consensus         1 tGT~LD~~R~~~~vA~~l~v~~~~V~~~-ViG~Hs~~~ip~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~i~~~~~   75 (172)
T d2ldxa2           1 SGCNLDSARFRYLIGEKLGVNPTSCHGW-VLGEHGDSSVPIWSGVNV----AGVTLKSLNPAIGTDKNKQHWKNVHKQVV   75 (172)
T ss_dssp             CTTHHHHHHHHHHHHHHHTCCTTSSCCC-EEECSSSCEEECGGGCBS----SCSSSSBSTTTCSCSSSSSSCHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhCcCHHHcEEE-EEcCCCCccccceeccee----cCcchhhHHHHhhhhhhhhhhhhhhhhhc
Confidence            5799999999999999999999999877 599999999999999999    9999988765431     12356888888


Q ss_pred             hHHHHHHhcCCccccchHHHHHHHHHhhhhcc--------CCCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          230 QRGAAIIKARKLSSALSAASSACDHIRDWVLG--------TPEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       230 ~~~~~i~~~kg~t~~~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      .+++++++.|+.+. +++|.+++.++.++..+        ....|+||+++++|||+||++  ++.+.++.
T Consensus        76 ~~~~~~~~~k~~s~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ygi~~~i~~s~Pv~ig~~Gv~~v~~  145 (172)
T d2ldxa2          76 EGGYEVLDMKGYTS-WAIGLSVTDLARSILKNLKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVK  145 (172)
T ss_dssp             HHHHHHHHHHSSCC-HHHHHHHHHHHHHHHTTCCEEEEEEEECTTSTTCCSSCEEEEEEEEETTEEEEEEC
T ss_pred             cceeehhhcccchh-HHHHHHHhHHHHhhcCCCccceeeeeecccccCCcCCeEEEEEEEEcCCCEEEEec
Confidence            89999999988655 47777888888877643        234599999999999999999  35555543

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.2e-24  Score=180.78  Aligned_cols=128  Identities=16%  Similarity=0.131  Sum_probs=106.1

Q ss_pred             eehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccc----hhHHHHHHHhH
Q 022227          156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWL----NGEFITTVQQR  231 (300)
Q Consensus       156 ~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~----~~~~~~~v~~~  231 (300)
                      ||.||++||++++|+++|++|.+|+.+ |||+||++|+|+||++++    +|.|+.+++.+..+.    .+++.++++++
T Consensus         1 GT~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~t~vp~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (172)
T d1a5za2           1 GTVLDTARLRTLIAQHCGFSPRSVHVY-VIGEHGDSEVPVWSGAMI----GGIPLQNMCQVCQKCDSKILENFAEKTKRA   75 (172)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHCcCHHHeEEE-EEecCCCCcccchhhccc----CCcchhhhhhccccccHHHhhhhHHHHhcc
Confidence            689999999999999999999999877 599999999999999999    999999987654322    35788889999


Q ss_pred             HHHHHhcCCccccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          232 GAAIIKARKLSSALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       232 ~~~i~~~kg~t~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      +++|++.|+.+++ ++|.++++++.+++.++        ...|+||+ +++|||+||++  ++.+.++.
T Consensus        76 ~~~i~~~~~~~~~-~~a~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~v~~s~P~~lg~~Gv~~v~~  142 (172)
T d1a5za2          76 AYEIIERKGATHY-AIALAVADIVESIFFDEKRVLTLSVYLEDYLGV-KDLCISVPVTLGKHGVERILE  142 (172)
T ss_dssp             HHHHHHHHSCCCH-HHHHHHHHHHHHHHTTCCEEEEEEEEESSBTTB-CSEEEEEEEEEETTEEEEECC
T ss_pred             ceeEeeccccchh-hHHHHHHHHHHHHHhhcccceeeeccccccccc-CCeeEeeeEEEcCCceEEEeC
Confidence            9999999886665 77778888888876443        33488887 59999999999  35555543

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.91  E-value=2e-24  Score=179.70  Aligned_cols=130  Identities=19%  Similarity=0.203  Sum_probs=102.2

Q ss_pred             eehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccch---hHHHHHHHhHH
Q 022227          156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLN---GEFITTVQQRG  232 (300)
Q Consensus       156 ~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~---~~~~~~v~~~~  232 (300)
                      +|.||++|+++++|+++|++|.+|+.+ ||||||++|||+||++++    +|.|+.+++.+..+..   .++..+.+.+|
T Consensus         1 ~c~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~t~vp~~S~~~i----~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g   75 (174)
T d1pzga2           1 ACMLDSGRFRRYVADALSVSPRDVQAT-VIGTHGDCMVPLVRYITV----NGYPIQKFIKDGVVTEKQLEEIAEHTKVSG   75 (174)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHhCcCHHHcEEE-EEccCCCccccceeeeeE----CCEechhhccccchhhhhhhhhhheeeccc
Confidence            689999999999999999999999877 599999999999999999    9999999886654433   34555566777


Q ss_pred             HHHHhcCCc-cccchHHHHHHHHHhhhhcc--------CCCccccCCCCCeEEEEeEEEC-Ceeeeeee
Q 022227          233 AAIIKARKL-SSALSAASSACDHIRDWVLG--------TPEVGSLLIFTPMIYTELVSWL-EPWTAIVG  291 (300)
Q Consensus       233 ~~i~~~kg~-t~~~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~v~~s~Pv~~~-~~~~~~~~  291 (300)
                      .+++..++. ++++++|.++++..++++..        +...|+||++ ++|||+||+++ +-|..|.+
T Consensus        76 ~~~~~~~~~gst~~~~a~a~~~~~~~i~~~~~~~~~~s~~~~~~yGi~-~v~~s~Pv~ig~~Gi~~v~~  143 (174)
T d1pzga2          76 GEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLK-DMFIGLPAVIGGAGIERVIE  143 (174)
T ss_dssp             HHHHHHHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECC
T ss_pred             eeEeeeecccchhhhhHHHHHHHHHhhcccCCceEEeeeccccccCCC-CceeeeeeEEcCCcEEEEeC
Confidence            777764433 33457777888877766533        3445999997 79999999993 44776655

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.91  E-value=4.3e-24  Score=176.89  Aligned_cols=143  Identities=13%  Similarity=0.108  Sum_probs=112.1

Q ss_pred             CcEEEEEcCCChHHHHH--HHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc----CCcccEEEeCChhhh
Q 022227            5 PVRVLVTGAAGQIGYAL--VPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF----PLLKGVVATTDAVEA   78 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~l--a~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~----~~~~~v~~~~~~~~a   78 (300)
                      ++||+|+| +|++|...  +..+.....+.   ..+|+|+|+++  ++.++.++|+.+...    ....++..++|.+++
T Consensus         1 k~KI~iIG-aGs~~~~~~~~~l~~~~~~~~---~~eI~L~Di~e--~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~a   74 (169)
T d1s6ya1           1 RLKIATIG-GGSSYTPELVEGLIKRYHELP---VGELWLVDIPE--GKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRA   74 (169)
T ss_dssp             CEEEEEET-TTCTTHHHHHHHHHHTTTTCC---EEEEEEECCGG--GHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHH
T ss_pred             CcEEEEEC-CChhhHHHHHHHHHHhccccC---CCEEEEEcCCc--cHHHHHHHHHHHHHHHHhcCCCceeeecCCchhh
Confidence            37999999 68877543  33333322211   13899999975  455667788766431    234677888999999


Q ss_pred             cCCCcEEEEeCCCCCCCCCcHHHH--------------------HHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH
Q 022227           79 CTGVNIAVMVGGFPRKEGMERKDV--------------------MSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA  138 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~~g~~r~dl--------------------~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~  138 (300)
                      ++|||+||+++|.+++++++|.++                    +.+|+++++++++.|+++|| ++++|++|||+|++|
T Consensus        75 l~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~p-da~~i~vtNPvdv~t  153 (169)
T d1s6ya1          75 LDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCP-DAWLINFTNPAGMVT  153 (169)
T ss_dssp             HTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHHH
T ss_pred             cCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCC-CeEEEEeCChHHHHH
Confidence            999999999999998888877766                    46899999999999999997 799999999999999


Q ss_pred             HHHHHHCCCCCCCcEEeee
Q 022227          139 LILKEFAPSIPAKNITCLT  157 (300)
Q Consensus       139 ~~~~~~~~~~p~~~i~~~t  157 (300)
                      ++++|+   +|++|+.|+|
T Consensus       154 ~~~~k~---~p~~kviGlC  169 (169)
T d1s6ya1         154 EAVLRY---TKQEKVVGLC  169 (169)
T ss_dssp             HHHHHH---CCCCCEEECC
T ss_pred             HHHHHH---CCCCCEEeeC
Confidence            999998   3667887776

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.90  E-value=2e-24  Score=179.19  Aligned_cols=127  Identities=18%  Similarity=0.254  Sum_probs=105.2

Q ss_pred             ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccch---hHHHHHHHhHHH
Q 022227          157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLN---GEFITTVQQRGA  233 (300)
Q Consensus       157 t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~---~~~~~~v~~~~~  233 (300)
                      |.||++|+++++|+++|++|.+|+.+ |||+||++|+|+||++++    +|.|+.+++++..+..   .++.++++.+++
T Consensus         1 T~LD~~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~t~vp~~s~~~i----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (171)
T d1ez4a2           1 TSLDSSRLRVALGKQFNVDPRSVDAY-IMGEHGDSEFAAYSTATI----GTRPVRDVAKEQGVSDDDLAKLEDGVRNKAY   75 (171)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECC-EESSSSSSCEECGGGCEE----TTEEHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEE-EEccCCCccccccccccc----CCccceeecccccccchhhhhheeehhhhhH
Confidence            68999999999999999999999887 589999999999999999    9999999887654432   457788999999


Q ss_pred             HHHhcCCccccchHHHHHHHHHhhhhcc--------CCCccccCCCCCeEEEEeEEEC-Ceeeeee
Q 022227          234 AIIKARKLSSALSAASSACDHIRDWVLG--------TPEVGSLLIFTPMIYTELVSWL-EPWTAIV  290 (300)
Q Consensus       234 ~i~~~kg~t~~~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~v~~s~Pv~~~-~~~~~~~  290 (300)
                      +++++||.++ +++|.+++++++++..+        +...|+||+ +++|||+||+++ .-|..|.
T Consensus        76 ~i~~~k~s~~-~a~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~-~~~~~S~Pv~lg~~Gv~~v~  139 (171)
T d1ez4a2          76 DIINLKGATF-YGIGTALMRISKAILRDENAVLPVGAYMDGQYGL-NDIYIGTPAIIGGTGLKQII  139 (171)
T ss_dssp             HHHHHHSCCC-HHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEEC
T ss_pred             HHHHhhhhHh-HHHHHHHHHHHHHHhccCCceEEEEEeeccccCc-cceeeeEEEEEcCCcEEEEe
Confidence            9999998655 47888888888776543        344599999 599999999993 3344443

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=99.90  E-value=1.4e-24  Score=179.67  Aligned_cols=130  Identities=16%  Similarity=0.060  Sum_probs=105.6

Q ss_pred             eeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccc--cchhHHHHHHHhHH
Q 022227          155 CLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA--WLNGEFITTVQQRG  232 (300)
Q Consensus       155 ~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~--~~~~~~~~~v~~~~  232 (300)
                      +||.||++|++++||+++|++|.+|+.+ |||+||++|+|+||++++    +|.|+.++...+.  +...++.++.+.++
T Consensus         1 sGT~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~~~v~~~s~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (169)
T d1ldma2           1 SGCNLDSARFRYLMGERLGVHSCSCHGW-VIGEHGDSVPSVWSGMNV----ASIKLHPLDGTNKDKQDWKKLHKDVVDSA   75 (169)
T ss_dssp             CTTHHHHHHHHHHHHHHHTSCGGGCBCC-BCBCSSTTCCBCGGGCEE----TTEESHHHHSSTTTTTTTTHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHCcCHHHeEEE-EEcCCCccchhhhhhccc----CCcchHHhhcccchhhhcceeEEEecCce
Confidence            5799999999999999999999999987 589999999999999999    9999998765432  22346777788888


Q ss_pred             HHHHhcCCccccchHHHHHHHHHhhhhcc--------CCCccccCCCCCeEEEEeEEEC-Ceeeeee
Q 022227          233 AAIIKARKLSSALSAASSACDHIRDWVLG--------TPEVGSLLIFTPMIYTELVSWL-EPWTAIV  290 (300)
Q Consensus       233 ~~i~~~kg~t~~~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~v~~s~Pv~~~-~~~~~~~  290 (300)
                      .+++..++.+. +++|.+++++++++...        +...|+||+++++|||+||+++ +-|..|.
T Consensus        76 ~~~~~~~~s~~-~a~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ygi~~~i~~s~Pv~lg~~Gv~~v~  141 (169)
T d1ldma2          76 YEVIKLKGYTS-WAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIV  141 (169)
T ss_dssp             HHHHHHHSSCC-HHHHHHHHHHHHHHHTTCCEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEEC
T ss_pred             EEEeccccchh-hHHHHHHhhhhheecCCCCceeeeeeecccccCCcCCceEEeeEEEcCCcEEEEe
Confidence            89988888654 57777888888776543        3445999999999999999994 3355443

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=3.8e-24  Score=176.47  Aligned_cols=142  Identities=15%  Similarity=0.075  Sum_probs=113.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc--CCcccEEEeCChhhhcCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--PLLKGVVATTDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~--~~~~~v~~~~~~~~a~~~   81 (300)
                      +..||+|+| +|++|...+...+...... ....||+|+|++  ++++++.+.|+.+...  ....+++.++|.+++++|
T Consensus         2 k~~KI~iIG-aGsv~~~~~~~~ll~~~~~-l~~~eivL~Did--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~   77 (167)
T d1u8xx1           2 KSFSIVIAG-GGSTFTPGIVLMLLDHLEE-FPIRKLKLYDND--KERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTD   77 (167)
T ss_dssp             CCEEEEEEC-TTSSSHHHHHHHHHHTTTT-SCEEEEEEECSC--HHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSS
T ss_pred             CCceEEEEC-CChhhhHHHHHHHHhhhhh-cCCCEEEEEcCC--hhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCC
Confidence            567999999 5999887554332221110 011389999997  4788877777766542  234678888999999999


Q ss_pred             CcEEEEeCCCCCCCCCcHHHHHH--------------------hhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           82 VNIAVMVGGFPRKEGMERKDVMS--------------------KNVSIYKAQASALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        82 aDvVi~~ag~~~~~g~~r~dl~~--------------------~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                      ||+||+++|.+++++++|.+++.                    +|+++++++++.|+++|| ++++|++|||+|++|+++
T Consensus        78 AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P-~A~li~~TNPvdv~t~~~  156 (167)
T d1u8xx1          78 VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSP-DAWMLNYSNPAAIVAEAT  156 (167)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECCSCHHHHHHHH
T ss_pred             CCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCC-CeEEEEeCCHHHHHHHHH
Confidence            99999999999999999988764                    569999999999999997 799999999999999999


Q ss_pred             HHHCCCCCCCcE
Q 022227          142 KEFAPSIPAKNI  153 (300)
Q Consensus       142 ~~~~~~~p~~~i  153 (300)
                      +++   +|++|+
T Consensus       157 ~k~---~P~~rV  165 (167)
T d1u8xx1         157 RRL---RPNSKI  165 (167)
T ss_dssp             HHH---STTCCE
T ss_pred             HHH---CCcccc
Confidence            998   476675

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.90  E-value=4.7e-25  Score=183.24  Aligned_cols=127  Identities=21%  Similarity=0.215  Sum_probs=106.6

Q ss_pred             ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccc----hhHHHHHHHhHH
Q 022227          157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWL----NGEFITTVQQRG  232 (300)
Q Consensus       157 t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~----~~~~~~~v~~~~  232 (300)
                      |.||++|+++++|+++|+++.+|+.+ ||||||++|+|+||++++    +|.|+.+++.+..|.    .+++.+++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~~~vp~~s~~~i----~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   75 (172)
T d1llca2           1 TSLDTARFRQSIAEMVNVDARSVHAY-IMGEHGDTEFPVWSHANI----GGVTIAEWVKAHPEIKEDKLVKMFEDVRDAA   75 (172)
T ss_dssp             THHHHHHHHHHHHHHSCCCTTSCEEE-EEBSSSSSCEEEEEEEES----TTCCSSSSSSCSCSSSSSSSSTTTTTTGGGT
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEE-EEcCCCCcceeeeecccc----CCccHHHHHhhhhccchhHHHHHHHhhcchH
Confidence            68999999999999999999999987 589999999999999999    999999987654332    256778889999


Q ss_pred             HHHHhcCCccccchHHHHHHHHHhhhh--------ccCCCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          233 AAIIKARKLSSALSAASSACDHIRDWV--------LGTPEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       233 ~~i~~~kg~t~~~s~a~ai~~~~~~~~--------~~t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      ++++++||.+++ ++|.++++.+..+.        .++...|+||++ ++|||+||++  ++.|+.++
T Consensus        76 ~~i~~~kg~~~~-a~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ygi~-~~~~s~P~~lg~~Gv~~i~~  141 (172)
T d1llca2          76 YEIIKLKGATFY-GIATALARISKAILNDENAVLPLSVYMDGQYGIN-DLYIGTPAVINRNGIQNILE  141 (172)
T ss_dssp             TTTSSSSSCTTH-HHHHHHHHHHHHHHHTCCCCEECCCCCSSSSSCC-SSCCBCEEEEETTEEEEECC
T ss_pred             HHHHHhhhhhhh-hhHHHHHHHHHHHhcCCCCccceeeeecCccCcc-cceEEEEEEEcCCceEEEec
Confidence            999999987664 77777777776654        345667999996 7999999999  67788764

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.90  E-value=6.3e-24  Score=175.22  Aligned_cols=126  Identities=20%  Similarity=0.145  Sum_probs=107.0

Q ss_pred             hhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccch---hHHHHHHHhHHHH
Q 022227          158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLN---GEFITTVQQRGAA  234 (300)
Q Consensus       158 ~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~---~~~~~~v~~~~~~  234 (300)
                      .||++|+++++|+++|++|.+|+.+ |||+||++|+|+||++++    +|.|+.+...+..|..   +++.+++++++++
T Consensus         2 ~LD~~R~~~~la~~lgv~~~~V~~~-ViG~Hg~~~vp~~s~~~i----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (165)
T d1t2da2           2 VLDTSRLKYYISQKLNVCPRDVNAH-IVGAHGNKMVLLKRYITV----GGIPLQEFINNKLISDAELEAIFDRTVNTALE   76 (165)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHH
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEE-EEcCCCCCcccceeeccc----CCcchhhhcccchhhhhhhhhhhhhhhhhhHH
Confidence            5899999999999999999999987 589999999999999999    9999999877655543   4578889999999


Q ss_pred             HHhcCCccccchHHHHHHHHHhhhhcc--------CCCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          235 IIKARKLSSALSAASSACDHIRDWVLG--------TPEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       235 i~~~kg~t~~~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      +++.|+.+++ ++|.+++.+++++...        ++..|.||++ |+|||+||++  ++++++++
T Consensus        77 v~~~~~~~~~-a~a~a~~~~~~~i~~~~~~~~~~~v~~~g~yg~~-~v~~s~Pv~lg~~Gv~~i~~  140 (165)
T d1t2da2          77 IVNLHASPYV-APAAAIIEMAESYLKDLKKVLICSTLLEGQYGHS-DIFGGTPVVLGANGVEQVIE  140 (165)
T ss_dssp             HHHHTSSCCH-HHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECC
T ss_pred             Hhhhccceee-chhHHHHHHHHHHhhccccceeeeeccccccccC-CeeEeeeEEEcCCceEEEeC
Confidence            9999997664 7888888888776543        3445999985 9999999999  58877765

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.90  E-value=4.7e-24  Score=175.87  Aligned_cols=124  Identities=19%  Similarity=0.219  Sum_probs=101.6

Q ss_pred             hhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHHHh
Q 022227          158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK  237 (300)
Q Consensus       158 ~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i~~  237 (300)
                      .||++|+++++|+++|++|.+|++++ ||+||++|||+||++++    +|.|+.+++.++  ..+++.++++++|++|++
T Consensus         3 ~LD~~R~~~~lA~~l~v~~~~V~~~V-iG~Hg~~~v~~~s~~~i----~g~~~~~~~~~~--~~~~~~~~v~~~g~~ii~   75 (164)
T d1uxja2           3 VLDAARYRTFIAMEAGVSVKDVQAML-MGGHGDEMVPLPRFSTI----SGIPVSEFIAPD--RLAQIVERTRKGGGEIVN   75 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEECC-EECSGGGEECCGGGEEE----TTEEGGGTSCHH--HHHHHHHHHHTHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEE-EcCCCCceeeeeeeeec----CCCchhhccchh--hHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999885 89999999999999999    999999887544  356899999999999987


Q ss_pred             cCCc-cccchHHHHHHHHHhhhhcc--------CCCccccCCCCCeEEEEeEEE--CCeeeee
Q 022227          238 ARKL-SSALSAASSACDHIRDWVLG--------TPEVGSLLIFTPMIYTELVSW--LEPWTAI  289 (300)
Q Consensus       238 ~kg~-t~~~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~  289 (300)
                      .++. ++++++|.++++++++++..        ++..|+||++ +++||+||++  ++.+..+
T Consensus        76 ~~~kgs~~~a~a~a~~~i~~~i~~~~~~~~~~~~~~~g~ygi~-~~~~s~P~~ig~~Gv~~v~  137 (164)
T d1uxja2          76 LLKTGSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQYGLN-DIYFGVPVILGAGGVEKIL  137 (164)
T ss_dssp             HHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEEC
T ss_pred             HHhcCcccchHHHHHHHHHHHHhCCCCceeeeeeeeccccCCC-CceEEECeEEeCCeeEEEe
Confidence            5443 44457777777777665532        3345999995 8999999999  4644443

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=4.2e-24  Score=175.75  Aligned_cols=142  Identities=12%  Similarity=0.102  Sum_probs=109.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+|+| +|++|.+.+...+...... ..-.||+|+|+++  ++++ .+.|+.+.......++..+++.+++++|||+|
T Consensus         1 mKIaiIG-aGs~g~~~~~~~l~~~~~~-~~~~el~L~Did~--~k~~-~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvV   75 (162)
T d1up7a1           1 MRIAVIG-GGSSYTPELVKGLLDISED-VRIDEVIFYDIDE--EKQK-IVVDFVKRLVKDRFKVLISDTFEGAVVDAKYV   75 (162)
T ss_dssp             CEEEEET-TTCTTHHHHHHHHHHHTTT-SCCCEEEEECSCH--HHHH-HHHHHHHHHHTTSSEEEECSSHHHHHTTCSEE
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHhcccc-cCccEEEEEecCc--HHHH-HHHHHHHhhhccCceEEEecCcccccCCCCEE
Confidence            5999999 6999998887655433211 0112899999974  5665 46788776655566788889999999999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHh--------------------hHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHC
Q 022227           86 VMVGGFPRKEGMERKDVMSK--------------------NVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~--------------------N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                      |+++|.+++++++|.+++..                    +++.+.++.+ +.++|| ++|+|++|||+|++|++++++ 
T Consensus        76 Vita~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~~p-~a~~i~vtNPvdiit~~~~~~-  152 (162)
T d1up7a1          76 IFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRKTS-NATIVNFTNPSGHITEFVRNY-  152 (162)
T ss_dssp             EECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHHTT-CCEEEECSSSHHHHHHHHHHT-
T ss_pred             EEecccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhccCC-CeEEEEeCCHHHHHHHHHHHh-
Confidence            99999999888888777654                    4556666655 677886 799999999999999999997 


Q ss_pred             CCCCCCcEEeee
Q 022227          146 PSIPAKNITCLT  157 (300)
Q Consensus       146 ~~~p~~~i~~~t  157 (300)
                        +|++++.|+|
T Consensus       153 --~p~~rviGlC  162 (162)
T d1up7a1         153 --LEYEKFIGLC  162 (162)
T ss_dssp             --TCCSSEEECC
T ss_pred             --CCCCCEEeeC
Confidence              3667877765

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.89  E-value=4.5e-23  Score=170.25  Aligned_cols=128  Identities=18%  Similarity=0.153  Sum_probs=103.6

Q ss_pred             ehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccc----hhHHHHHHHhHH
Q 022227          157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWL----NGEFITTVQQRG  232 (300)
Q Consensus       157 t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~----~~~~~~~v~~~~  232 (300)
                      |.||++||++++|+++|+++.+|+.+ |||+||++|+|+||++++    +|.|+.+++.+..+.    .+++.++++..+
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~~~vp~~s~~~v----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   75 (168)
T d1ldna2           1 TILDTARFRFLLGEYFSVAPQNVHAY-IIGEHGDTELPVWSQAYI----GVMPIRKLVESKGEEAQKDLERIFVNVRDAA   75 (168)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGEEEE-EEBCSSTTCEEEEEEEEE----TTEESTTTSGGGTTTHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHeEEE-EEcCCCCccccchhhccc----CCcchhhhhhhhhhhhccchhhhhhhhhhhH
Confidence            68999999999999999999999987 589999999999999999    999999887654332    356778888889


Q ss_pred             HHHHhcCCccccchHHHHHHHHHhhhhcc--------CCCccccCCCCCeEEEEeEEEC-Ceeeeeee
Q 022227          233 AAIIKARKLSSALSAASSACDHIRDWVLG--------TPEVGSLLIFTPMIYTELVSWL-EPWTAIVG  291 (300)
Q Consensus       233 ~~i~~~kg~t~~~s~a~ai~~~~~~~~~~--------t~~~g~ygi~~~v~~s~Pv~~~-~~~~~~~~  291 (300)
                      +++++.|+.+. ++++.++.++++.+..+        ....|+||+ +|+|||+||+++ .-|..|.+
T Consensus        76 ~~v~~~~~~s~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~-~~v~~s~Pv~lg~~Gv~~v~~  141 (168)
T d1ldna2          76 YQIIEKKGATY-YGIAMGLARVTRAILHNENAILTVSAYLDGLYGE-RDVYIGVPAVINRNGIREVIE  141 (168)
T ss_dssp             HHHHHHHSCCC-HHHHHHHHHHHHHHHTTCCEEEEEEEEEESTTSC-EEEEEEEEEEEETTEEEEECC
T ss_pred             HHHHHhhcccc-chHHHHHhhHHHhhhcccceeeeeeeeeccccCC-CCeeecceEEEcCCeEEEEeC
Confidence            99999888555 46776777777776543        234489995 599999999993 34777654

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.88  E-value=1.3e-23  Score=170.13  Aligned_cols=115  Identities=14%  Similarity=0.040  Sum_probs=94.4

Q ss_pred             eehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHH
Q 022227          156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAI  235 (300)
Q Consensus       156 ~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i  235 (300)
                      ||.||++|||+.|++....+..  ++++ +||||++|||+||.+++    +|++.          .+++.+++|++|++|
T Consensus         1 Gt~LDsaR~r~~l~~~~~~~v~--~a~V-iGeHGds~vp~~S~~~i----~g~~~----------~~~i~~~v~~~g~eI   63 (152)
T d1ojua2           1 GNQLDSQRLKERLYNAGARNIR--RAWI-IGEHGDSMFVAKSLADF----DGEVD----------WEAVENDVRFVAAEV   63 (152)
T ss_dssp             SHHHHHHHHHHHHHHTTCBSCC--CCCE-EBCSSTTCEECGGGCCC----BSCCC----------HHHHHHHHHTTHHHH
T ss_pred             CCccHHHHHHHHHHccCCCCcc--eeEE-EecCCCccccccccccc----cCccc----------hhHhHHHHHHHHHHh
Confidence            5899999999999876654432  6785 89999999999999999    77542          357899999999999


Q ss_pred             HhcCCccccchHHHHHHHHHhhhhc--------cCCCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          236 IKARKLSSALSAASSACDHIRDWVL--------GTPEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       236 ~~~kg~t~~~s~a~ai~~~~~~~~~--------~t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      +++||+|+ +++|.++++++++++.        +++.+|+||+. |+|+|+||++  ++ +.+++
T Consensus        64 i~~kG~t~-~gia~a~~~iv~aIl~d~~~v~pvs~~l~geyG~~-dv~lsvP~vig~~G-vei~~  125 (152)
T d1ojua2          64 IKRKGATI-FGPAVAIYRMVKAVVEDTGEIIPTSMILQGEYGIE-NVAVGVPAKLGKNG-AEVAD  125 (152)
T ss_dssp             HHHHSSCC-HHHHHHHHHHHHHHHTTCCCEEEEEEEEESGGGCE-EEEEEEEEEEETTE-EEECC
T ss_pred             hhhcccee-ccHHHHHHHHHHHHHhcCCCceeeeEEeccccCCC-CEEEEeEEEECCCc-eEEEc
Confidence            99999876 5899999999988664        34556999994 9999999999  45 56554

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=2.5e-22  Score=166.40  Aligned_cols=137  Identities=14%  Similarity=0.124  Sum_probs=107.7

Q ss_pred             CCcEEEEEcCCChHHHHHHH--HHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc--CCcccEEEeCChhhhc
Q 022227            4 EPVRVLVTGAAGQIGYALVP--MIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--PLLKGVVATTDAVEAC   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~--~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~--~~~~~v~~~~~~~~a~   79 (300)
                      ++|||+||| +|++|++++.  .|+...-+.   ..||+|+|++  ++++++.+.|+.+...  ....+++.++|.++++
T Consensus         1 p~mKI~iIG-aGsvg~t~~~~~~l~~~~~l~---~~eivL~Did--~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL   74 (171)
T d1obba1           1 PSVKIGIIG-AGSAVFSLRLVSDLCKTPGLS---GSTVTLMDID--EERLDAILTIAKKYVEEVGADLKFEKTMNLDDVI   74 (171)
T ss_dssp             CCCEEEEET-TTCHHHHHHHHHHHHTCGGGT---TCEEEEECSC--HHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHH
T ss_pred             CCcEEEEEC-CCHHHhHHHHHHHHHhccccC---CCEEEEEeCC--chHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcc
Confidence            468999999 6999987543  344322111   1289999997  5789999999988653  3346788889999999


Q ss_pred             CCCcEEEEeCCC------------------CCCCCCcHHHH--------HHhhHHHHHHHHHHHhhhcCCCeEEEEecCc
Q 022227           80 TGVNIAVMVGGF------------------PRKEGMERKDV--------MSKNVSIYKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        80 ~~aDvVi~~ag~------------------~~~~g~~r~dl--------~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                      +|||+||++++.                  +++++++|.++        ..+|+++++++++.|+++|| ++++|++|||
T Consensus        75 ~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p-~a~~i~~TNP  153 (171)
T d1obba1          75 IDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSP-KAWYLQAANP  153 (171)
T ss_dssp             TTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCT-TCEEEECSSC
T ss_pred             cCCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCc-CeEEEEECCh
Confidence            999999998664                  34455666554        45799999999999999997 7999999999


Q ss_pred             hhhHHHHHHHHCCCC
Q 022227          134 ANTNALILKEFAPSI  148 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~  148 (300)
                      +|++|++++++ +++
T Consensus       154 vdv~t~~~~k~-~~~  167 (171)
T d1obba1         154 IFEGTTLVTRT-VPI  167 (171)
T ss_dssp             HHHHHHHHHHH-SCS
T ss_pred             HHHHHHHHHHh-cCC
Confidence            99999999998 443

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.87  E-value=2.2e-22  Score=164.77  Aligned_cols=124  Identities=17%  Similarity=0.143  Sum_probs=100.0

Q ss_pred             eehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHHH
Q 022227          156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAI  235 (300)
Q Consensus       156 ~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~i  235 (300)
                      ||.||++|+++++|+++|+++.+|++++ ||+||++|+|+||++++    ++.|.....    +...++.++++++++++
T Consensus         2 Gt~LD~~R~~~~lA~~l~v~~~~V~~~V-iG~Hg~~~v~~~s~~~v----~~~~~~~~~----~~~~~~~~~~~~~~~~i   72 (161)
T d1o6za2           2 GGRLDSARFRYVLSEEFDAPVQNVEGTI-LGEHGDAQVPVFSKVSV----DGTDPEFSG----DEKEQLLGDLQESAMDV   72 (161)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCGGGEECCE-EECSSTTEEECGGGCEE----TTBCCCCCH----HHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHCcCHHHeEEEE-EeCCCCceeeehhhhcc----cccccccch----HHHHHHHHHhhhhHHHH
Confidence            4899999999999999999999999885 89999999999999999    887764321    22357888999999999


Q ss_pred             HhcCCccccchHHHHHHHHHhhhhccC--------CCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          236 IKARKLSSALSAASSACDHIRDWVLGT--------PEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       236 ~~~kg~t~~~s~a~ai~~~~~~~~~~t--------~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      ++.++.+++ ++|.++++++..++...        ...|+||+ +|++||+||++  ++.++.+.
T Consensus        73 ~~~~~~s~~-~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~S~Pv~ig~~Gv~~v~~  135 (161)
T d1o6za2          73 IERKGATEW-GPARGVAHMVEAILHDTGEVLPASVKLEGEFGH-EDTAFGVPVSLGSNGVEEIVE  135 (161)
T ss_dssp             HTTTSSCCH-HHHHHHHHHHHHHHTTCCCEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECC
T ss_pred             HHhhhhhhh-HHHHhhHhhhHhhhhccccceeecccccccccc-cCceeeeeeEEcCCCEEEEeC
Confidence            999987664 67778888776655432        33477777 59999999999  56666654

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.82  E-value=1.4e-20  Score=155.37  Aligned_cols=124  Identities=15%  Similarity=0.098  Sum_probs=93.8

Q ss_pred             eehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC-CCceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHH
Q 022227          156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH-SSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAA  234 (300)
Q Consensus       156 ~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h-g~~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~  234 (300)
                      .|.||++||++++|+++|++|.+|++++ +|+| |++++|+||++.+    ++.+..+     .  .+++.+++++++++
T Consensus         1 ~T~LDs~R~~~~la~~l~v~~~~V~~~V-iGeHg~~t~vp~~s~~~~----~~~~~~~-----~--~~~l~~~v~~~~~e   68 (169)
T d1mlda2           1 VTTLDIVRANAFVAELKGLDPARVSVPV-IGGHAGKTIIPLISQCTP----KVDFPQD-----Q--LSTLTGRIQEAGTE   68 (169)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCGGGCBCCE-EECSSGGGEEECGGGCBS----CCCCCHH-----H--HHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeeEEE-EEcCCCcceeehhhhhcc----CCCCcHH-----H--HHHHHHHHHHhHHH
Confidence            3789999999999999999999999997 5777 5688998888887    5543222     1  35799999999999


Q ss_pred             HHhcCCcccc--chHHHHHHHHHhhhh--------ccCCCccccCCCCCeEEEEeEEE--CCeeeeeee
Q 022227          235 IIKARKLSSA--LSAASSACDHIRDWV--------LGTPEVGSLLIFTPMIYTELVSW--LEPWTAIVG  291 (300)
Q Consensus       235 i~~~kg~t~~--~s~a~ai~~~~~~~~--------~~t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~~  291 (300)
                      |++.|+.+++  ++.+.++++.+..+.        ..+...+.||+++++|||+||++  ++.|..+.-
T Consensus        69 ii~~k~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~v~~s~P~~ig~~Gi~~v~~l  137 (169)
T d1mlda2          69 VVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGI  137 (169)
T ss_dssp             HHHHHTTSCSCCHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECCC
T ss_pred             HHHhhcCcChHhHHHHHHHHHHHHHhccccCCceEEEEEeeccccccCCEeEeeeEEEcCCccEEEecC
Confidence            9999986543  344555555544322        12223377888889999999999  578988864

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=7.2e-20  Score=150.76  Aligned_cols=122  Identities=16%  Similarity=0.048  Sum_probs=89.9

Q ss_pred             eehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC-ceeeeccceeeeccCCCcchhhhhcccccchhHHHHHHHhHHHH
Q 022227          156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAA  234 (300)
Q Consensus       156 ~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~-~~~p~~s~a~v~~~~~g~p~~~~~~~~~~~~~~~~~~v~~~~~~  234 (300)
                      .|.||++||++++|+++|++|.+|++++ +|+||+ +++|++|++..    .+.        ..+..+++.+++|++|++
T Consensus         1 ~T~LDs~R~~~~iA~~l~v~~~~V~~~V-iGghg~~~~~p~~s~~~~----~~~--------~~~~~~~l~~~v~~~g~~   67 (167)
T d2cmda2           1 VTTLDIIRSNTFVAELKGKQPGEVEVPV-IGGHSGVTILPLLSQVPG----VSF--------TEQEVADLTKRIQNAGTE   67 (167)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGCCCCE-EECSSTTTEEECGGGCTT----CCC--------CHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeEEEE-EEcCCCceEeeecccccC----CCC--------cHHHHHHHHHHHHhhhhh
Confidence            3789999999999999999999999997 577765 56666666544    221        123457899999999999


Q ss_pred             HHhcCCc--cccchHHHHHHHHHhhhhc--------cCCCccccCCCCCeEEEEeEEE--CCeeeeee
Q 022227          235 IIKARKL--SSALSAASSACDHIRDWVL--------GTPEVGSLLIFTPMIYTELVSW--LEPWTAIV  290 (300)
Q Consensus       235 i~~~kg~--t~~~s~a~ai~~~~~~~~~--------~t~~~g~ygi~~~v~~s~Pv~~--~~~~~~~~  290 (300)
                      |++.|+.  +..+++|.++++..+.+..        +....++||.++++|||+||++  ++.|.+++
T Consensus        68 ii~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~s~P~~ig~~Gv~~v~~  135 (167)
T d2cmda2          68 VVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKS  135 (167)
T ss_dssp             HHHHHTTSCSCCHHHHHHHHHHHHHHHHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECC
T ss_pred             hhhhhccCcchHHHHHHHHHHHHHHHhccCCCceEEEEEcccccccCCCccccccEEEeCCceEEEee
Confidence            9987643  2345777776666655432        1223378999999999999999  46676654

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.20  E-value=1.7e-11  Score=110.95  Aligned_cols=175  Identities=11%  Similarity=0.093  Sum_probs=112.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +.|||+||||+||||++++..|+++|.       +|+.+|..+......    ++....+. ..++.-..+..++++++|
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-------~V~~~d~~~~~~~~~----~~~~~~~~-~~D~~~~~~~~~~~~~~d   81 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH-------YVIASDWKKNEHMTE----DMFCDEFH-LVDLRVMENCLKVTEGVD   81 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCCSSSCG----GGTCSEEE-ECCTTSHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEeCCCccchhh----hcccCcEE-EeechhHHHHHHHhhcCC
Confidence            468999999999999999999999875       788888754221111    11110000 001111113456688999


Q ss_pred             EEEEeCCCCCCC---CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHH-----------HHCCCCC
Q 022227           84 IAVMVGGFPRKE---GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK-----------EFAPSIP  149 (300)
Q Consensus        84 vVi~~ag~~~~~---g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~-----------~~~~~~p  149 (300)
                      .|||+|+.....   ..........|+.....+.+.+.+.+.+  ++|..|.... ......           +. ....
T Consensus        82 ~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk--~~i~~SS~~~-~~~~~~~~~~~~~~~~~e~-~~~~  157 (363)
T d2c5aa1          82 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK--RFFYASSACI-YPEFKQLETTNVSLKESDA-WPAE  157 (363)
T ss_dssp             EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS--EEEEEEEGGG-SCGGGSSSSSSCEECGGGG-SSBC
T ss_pred             eEeecccccccccccccccccccccccchhhHHHHhHHhhCcc--cccccccccc-ccccccccccccccccccC-CcCC
Confidence            999998765321   2344556778999999999999988532  4565554332 110000           00 0011


Q ss_pred             CCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCCceee
Q 022227          150 AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP  194 (300)
Q Consensus       150 ~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~~~~p  194 (300)
                      +...++.+++..+++...+.+..|++...++...|+|.++....+
T Consensus       158 p~~~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~  202 (363)
T d2c5aa1         158 PQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGG  202 (363)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCccccc
Confidence            234678888888888888889999999999988999987754433

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=6.9e-11  Score=105.09  Aligned_cols=168  Identities=10%  Similarity=-0.032  Sum_probs=109.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||.||||+||+|++++..|++.|.       +|+.+|.... ...+    .+.........++.-......++.++|+|
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~-------~V~~~d~~~~-~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~d~V   69 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH-------EVTVVDNFFT-GRKR----NVEHWIGHENFELINHDVVEPLYIEVDQI   69 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSS-CCGG----GTGGGTTCTTEEEEECCTTSCCCCCCSEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-------EEEEEeCCCc-CCHH----HHHHhcCCCceEEEehHHHHHHHcCCCEE
Confidence            6999999999999999999998875       7888885321 1111    11111100011222223345567799999


Q ss_pred             EEeCCCCCC--CCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH----HHHH-C---CCCCCCcEEe
Q 022227           86 VMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEF-A---PSIPAKNITC  155 (300)
Q Consensus        86 i~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~----~~~~-~---~~~p~~~i~~  155 (300)
                      ||+|+....  ...+..+.+..|+....++.+++++..   +++|.+|... +....    ..+. .   ..+.+...++
T Consensus        70 ihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~---~k~I~~SS~~-vy~~~~~~~~~e~~~~~~~~~~p~~~Y~  145 (312)
T d2b69a1          70 YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG---ARLLLASTSE-VYGDPEVHPQSEDYWGHVNPIGPRACYD  145 (312)
T ss_dssp             EECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHT---CEEEEEEEGG-GGBSCSSSSBCTTCCCBCCSSSTTHHHH
T ss_pred             EECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcC---CcEEEEEChh-eecCCCCCCCCccccCCCCCCCCccHHH
Confidence            999986432  123456678899999999999998874   4677765422 11000    0000 0   0011234678


Q ss_pred             eehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       156 ~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      .+++..+.+...+++..|++...++...|+|.+.
T Consensus       146 ~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~  179 (312)
T d2b69a1         146 EGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRM  179 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred             HHHHHHHHHHHHHHHHhCCcEEEEEeeeEECCCC
Confidence            8888888888888999999999999999999664

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=3.6e-11  Score=107.92  Aligned_cols=173  Identities=14%  Similarity=0.093  Sum_probs=102.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc----ccEEEeCChhhhcC-
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL----KGVVATTDAVEACT-   80 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~----~~v~~~~~~~~a~~-   80 (300)
                      |||.||||+||||++++..|+..|.       +|+++|......  +.....+.+......    .++.-...+.++++ 
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~-------~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~   71 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH-------DVIILDNLCNSK--RSVLPVIERLGGKHPTFVEGDIRNEALMTEILHD   71 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSCC--TTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEECCCCcc--hhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhc
Confidence            6999999999999999999998875       789998632111  001011111110000    11111113445566 


Q ss_pred             -CCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH----HHHHCCCCCCCcE
Q 022227           81 -GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEFAPSIPAKNI  153 (300)
Q Consensus        81 -~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~----~~~~~~~~p~~~i  153 (300)
                       ++|+|||+|+....+  -++..+.++.|+...+++.+.++++..+  ++|..|..+ +....    ..+..+...+...
T Consensus        72 ~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~--~~i~~Ss~~-vy~~~~~~~~~e~~~~~~p~~~  148 (338)
T d1udca_          72 HAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK--NFIFSSSAT-VYGDQPKIPYVESFPTGTPQSP  148 (338)
T ss_dssp             TTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC--EEEEEEEGG-GGCSCCSSSBCTTSCCCCCSSH
T ss_pred             cCCCEEEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCC--EEEecCcce-EEccccccccccccccCCCcch
Confidence             789999999864211  1234577889999999999999998532  455555332 21000    0000001112335


Q ss_pred             EeeehhhHHHHHHHHHHH-cCCCCCCeEEEEEecCCCC
Q 022227          154 TCLTRLDHNRALGQISEK-LNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       154 ~~~t~ld~~R~~~~la~~-l~v~~~~V~~~~V~G~hg~  190 (300)
                      ++.+.+...++....+++ .+.+...+|...|+|.+..
T Consensus       149 Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~  186 (338)
T d1udca_         149 YGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPS  186 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTT
T ss_pred             HHHHHhhhhHHHHHHHhhccCCeEEEEeeccEEeccCC
Confidence            677778777766544444 5777777888888997653

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=9.5e-11  Score=106.13  Aligned_cols=171  Identities=11%  Similarity=0.014  Sum_probs=104.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc---hhhhhhhhhhhhhhccCCcccEEE-------eCCh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA---AEALNGVKMELVDAAFPLLKGVVA-------TTDA   75 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~---~~~l~g~~~dl~~~~~~~~~~v~~-------~~~~   75 (300)
                      ++|.||||+||||++++..|++.|.       +|+.+|+..+   .++++..    .+.......++..       ..+.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-------~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~Dl~d~~~~   70 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-------EVHGIKRRASSFNTERVDHI----YQDPHTCNPKFHLHYGDLSDTSNL   70 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECC-------------------------CCEEECCCCSSCHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-------EEEEEECCCcccchhhHHHH----HhhhhhcCCCeEEEEeecCCHHHH
Confidence            4566999999999999999998875       7888887431   1111111    1100011111211       1123


Q ss_pred             hhhcCCC--cEEEEeCCCCCC--CCCcHHHHHHhhHHHHHHHHHHHhhhcCCC-eEEEEecCchhhHH---HH-HHHHCC
Q 022227           76 VEACTGV--NIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPN-CKVLVVANPANTNA---LI-LKEFAP  146 (300)
Q Consensus        76 ~~a~~~a--DvVi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~-~~viv~sNP~~~~~---~~-~~~~~~  146 (300)
                      .+.+++.  |+|+|+|+....  ...+....++.|+..+.++++++++++-+. .++|.+|... +-.   .. +.+. .
T Consensus        71 ~~~~~~~~~d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~-vYG~~~~~~~~E~-~  148 (357)
T d1db3a_          71 TRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSE-LYGLVQEIPQKET-T  148 (357)
T ss_dssp             HHHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGG-GGTTCCSSSBCTT-S
T ss_pred             HHHHhccCCCEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchh-hhCCCCCCCcCCC-C
Confidence            4555644  999999987542  234556678889999999999999875322 3566555322 100   00 0011 1


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      .+.+...++.+++..+.+...+++..+++..-++...|+|...
T Consensus       149 ~~~P~~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~  191 (357)
T d1db3a_         149 PFYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRR  191 (357)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTS
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCC
Confidence            1222456788889888888888999999999999888899653

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=8.6e-10  Score=91.57  Aligned_cols=107  Identities=19%  Similarity=0.250  Sum_probs=78.9

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhh----h---hcc------------
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELV----D---AAF------------   63 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~----~---~~~------------   63 (300)
                      |.-+||+|+| +|.+|+.+|..++..|+       +++|+|.++  +.++.....+.    .   ...            
T Consensus         2 ~~IkkvaViG-aG~mG~~iA~~~a~~G~-------~V~l~D~~~--~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~   71 (192)
T d1f0ya2           2 IIVKHVTVIG-GGLMGAGIAQVAAATGH-------TVVLVDQTE--DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVE   71 (192)
T ss_dssp             CCCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred             ceeEEEEEEC-cCHHHHHHHHHHHhCCC-------cEEEEECCh--HHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHH
Confidence            3446999999 69999999999999886       899999974  33321111111    0   000            


Q ss_pred             CCcccEEEeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        64 ~~~~~v~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      ....++..+++..+++++||+|+.+.              .+|.++.+++.+.+++++++++  |++||.+.
T Consensus        72 ~~l~~i~~~~d~~~a~~~ad~ViEav--------------~E~l~~K~~v~~~l~~~~~~~~--ilasnTS~  127 (192)
T d1f0ya2          72 KTLSTIATSTDAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEHT--IFASNTSS  127 (192)
T ss_dssp             HHHHTEEEESCHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTTC--EEEECCSS
T ss_pred             HHHhhccccchhHhhhcccceehhhc--------------ccchhHHHHHHHHHhhhcccCc--eeeccCcc
Confidence            01246788889999999999999984              3567888999999999998874  77888764

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.6e-09  Score=90.30  Aligned_cols=102  Identities=15%  Similarity=0.186  Sum_probs=68.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhh--------hhhhhhhccCCcccEEEeCCh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGV--------KMELVDAAFPLLKGVVATTDA   75 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~--------~~dl~~~~~~~~~~v~~~~~~   75 (300)
                      .++||+|+||+|++|++++..|+..|+       +++++++++  +++...        ..|+.+.           .+.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~-------~V~~~~R~~--~~~~~~~~~~~~~~~gD~~d~-----------~~l   61 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGY-------EVTVLVRDS--SRLPSEGPRPAHVVVGDVLQA-----------ADV   61 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCG--GGSCSSSCCCSEEEESCTTSH-----------HHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEEcCh--hhcccccccccccccccccch-----------hhH
Confidence            345999999999999999999998875       788888753  333211        1122211           246


Q ss_pred             hhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           76 VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      .++++++|+||+++|........     ..+....+++++++++.+-+  ++|.+|.
T Consensus        62 ~~al~~~d~vi~~~g~~~~~~~~-----~~~~~~~~~l~~aa~~~~v~--r~i~~ss  111 (205)
T d1hdoa_          62 DKTVAGQDAVIVLLGTRNDLSPT-----TVMSEGARNIVAAMKAHGVD--KVVACTS  111 (205)
T ss_dssp             HHHHTTCSEEEECCCCTTCCSCC-----CHHHHHHHHHHHHHHHHTCC--EEEEECC
T ss_pred             HHHhcCCCEEEEEeccCCchhhh-----hhhHHHHHHHHHHHHhcCCC--eEEEEee
Confidence            78899999999998864322111     23456778888888887542  4565553

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.92  E-value=1.3e-09  Score=99.31  Aligned_cols=177  Identities=14%  Similarity=0.168  Sum_probs=103.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch--------hhh---hhhhhhhhhhccCCcccEE-EeC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--------EAL---NGVKMELVDAAFPLLKGVV-ATT   73 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~--------~~l---~g~~~dl~~~~~~~~~~v~-~~~   73 (300)
                      |||.||||+||||++++..|++.|+       +|+.+|.....        +.+   ......+.........++. +..
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~-------~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   74 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNY-------EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVG   74 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEES
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-------EEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEc
Confidence            7999999999999999999999875       79999831000        000   0000000000000001111 111


Q ss_pred             C------hhhhcCC--CcEEEEeCCCCCCC--CCc---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH-H
Q 022227           74 D------AVEACTG--VNIAVMVGGFPRKE--GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA-L  139 (300)
Q Consensus        74 ~------~~~a~~~--aDvVi~~ag~~~~~--g~~---r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~-~  139 (300)
                      |      ..+++++  .|+|||+|+....+  ..+   ..+....|+..+.++.+.+.+++. ..+++..|....... .
T Consensus        75 Dl~d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~-~~~~i~~ss~~~~~~~~  153 (393)
T d1i24a_          75 DICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGE-ECHLVKLGTMGEYGTPN  153 (393)
T ss_dssp             CTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEEECCGGGGCCCS
T ss_pred             cCCCHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhcc-ccceeeccccccccccc
Confidence            2      3445553  59999999764311  112   235678899999999999999976 334454443322100 0


Q ss_pred             HHHHHC------C--------CCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          140 ILKEFA------P--------SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       140 ~~~~~~------~--------~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                      .-....      .        ...+...++.+++..+.+...+++..+++...++...|+|...+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~  218 (393)
T d1i24a_         154 IDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTD  218 (393)
T ss_dssp             SCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCT
T ss_pred             cccccccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCcc
Confidence            000000      0        01112346778888888888888999999999999899996543

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.89  E-value=3.3e-10  Score=101.71  Aligned_cols=176  Identities=13%  Similarity=0.067  Sum_probs=106.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-cccEEEeCChhhhcCCCc
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGVN   83 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-~~~v~~~~~~~~a~~~aD   83 (300)
                      +|||.||||+||||++++..|++.|.     .+.++.+|......... ....+......+ ..++.-.....+++++.|
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~-----~v~v~~~d~~~~~~~~~-~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~~   75 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHP-----DVHVTVLDKLTYAGNKA-NLEAILGDRVELVVGDIADAELVDKLAAKAD   75 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCT-----TCEEEEEECCCTTCCGG-GTGGGCSSSEEEEECCTTCHHHHHHHHTTCS
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCC-----CeEEEEEeCCCccccHH-HHHHhhcCCeEEEEccCCCHHHHHHHHhhhh
Confidence            47999999999999999999998764     23566666421000000 000010000000 001101123567788999


Q ss_pred             EEEEeCCCCCCCC--CcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHC--------------CC
Q 022227           84 IAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFA--------------PS  147 (300)
Q Consensus        84 vVi~~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~--------------~~  147 (300)
                      .|++.|+......  .+..+.+..|+..+.++++.+.+...   ++++++...-.-.....+..              ..
T Consensus        76 ~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~---k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~  152 (346)
T d1oc2a_          76 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI---RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETN  152 (346)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC---EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSC
T ss_pred             hhhhhhhcccccchhhCcccceeeehHhHHhhhhhhccccc---cccccccceEecccCccccccccccCcccccccCCC
Confidence            9999987654221  23356778899999999999988853   45555432210000000000              00


Q ss_pred             CCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       148 ~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      .-+...++.+.+..+++...+.+..+++..-++...|+|.+.
T Consensus       153 ~~p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~  194 (346)
T d1oc2a_         153 YNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ  194 (346)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCC
Confidence            112245778889988888888899999999999999999654

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=5.7e-10  Score=98.46  Aligned_cols=157  Identities=13%  Similarity=0.183  Sum_probs=101.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhh--cCCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA--CTGV   82 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a--~~~a   82 (300)
                      .+||.||||+||||++++..|++.|.       +++++|...+        .|+.+..           ...+.  ..+.
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~-------~vi~~~~~~~--------~~~~~~~-----------~~~~~~~~~~~   55 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGD-------VELVLRTRDE--------LNLLDSR-----------AVHDFFASERI   55 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT-------EEEECCCTTT--------CCTTCHH-----------HHHHHHHHHCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcC-------EEEEecCchh--------ccccCHH-----------HHHHHHhhcCC
Confidence            35999999999999999999998764       4556665321        1222221           11111  2357


Q ss_pred             cEEEEeCCCCCCC---CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH----HHHHC----CCCCCC
Q 022227           83 NIAVMVGGFPRKE---GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEFA----PSIPAK  151 (300)
Q Consensus        83 DvVi~~ag~~~~~---g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~----~~~~~----~~~p~~  151 (300)
                      |+|+|+|+.....   ..+..+.+..|+....++++.+.++.-+  ++|.+|. ..+....    +.+..    +..|++
T Consensus        56 d~v~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~--~~i~~SS-~~vyg~~~~~~~~E~~~~~~~~~~~~  132 (315)
T d1e6ua_          56 DQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN--KLLFLGS-SCIYPKLAKQPMAESELLQGTLEPTN  132 (315)
T ss_dssp             SEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC--EEEEECC-GGGSCTTCCSSBCGGGTTSSCCCGGG
T ss_pred             CEEEEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCC--EEEEECC-ceEcCCCCCCCccCCccccCCCCCCC
Confidence            8999988654211   1234566788999999999999888532  4565553 3321100    00000    001122


Q ss_pred             cEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          152 NITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       152 ~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                      ..++.+++..+++...+++..|++..-+|...|+|.++.
T Consensus       133 ~~Y~~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~  171 (315)
T d1e6ua_         133 EPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDN  171 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCC
Confidence            357888899999988889999999999999999998764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.87  E-value=4.8e-09  Score=86.47  Aligned_cols=150  Identities=17%  Similarity=0.166  Sum_probs=97.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhh---hhh-hhhhc----c------CCcccE
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGV---KME-LVDAA----F------PLLKGV   69 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~---~~d-l~~~~----~------~~~~~v   69 (300)
                      +-.||+|+| +|.+|+.++..++..|+       +++++|+++  +.++..   ..+ +.+..    .      ....++
T Consensus         3 ~I~~vaViG-aG~mG~~iA~~~a~~G~-------~V~l~D~~~--~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i   72 (186)
T d1wdka3           3 DVKQAAVLG-AGIMGGGIAYQSASKGT-------PILMKDINE--HGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGI   72 (186)
T ss_dssp             CCSSEEEEC-CHHHHHHHHHHHHHTTC-------CEEEECSSH--HHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHE
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEECCH--HHHhhhhhhhhhhHHhhhcccccchhhhhhhhcee
Confidence            456899999 69999999999998886       799999974  333211   111 11110    0      012456


Q ss_pred             EEeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCC--
Q 022227           70 VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS--  147 (300)
Q Consensus        70 ~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~--  147 (300)
                      ..+++ .+++.+||+||.+.              .+|.++.+++.+.+.+++++++  |++||.+.....-+......  
T Consensus        73 ~~~~~-~~~~~~adlViEav--------------~E~l~~K~~lf~~l~~~~~~~~--IiaSnTS~l~i~~la~~~~~p~  135 (186)
T d1wdka3          73 RPTLS-YGDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDA--ILASNTSTISISLLAKALKRPE  135 (186)
T ss_dssp             EEESS-STTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTC--EEEECCSSSCHHHHGGGCSCGG
T ss_pred             ecccc-cccccccceeeeee--------------cchHHHHHHHHHHHHhhcCCCe--eEEeccccccHHHHHHhccCch
Confidence            66665 46799999999974              2467888999999999999875  78888765333333332221  


Q ss_pred             --------CCCCc-----EEe--eehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          148 --------IPAKN-----ITC--LTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       148 --------~p~~~-----i~~--~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                              .|++.     +..  .|.-++......+++.+|..|--|+
T Consensus       136 r~~g~Hf~nP~~~~~lVEiv~~~~T~~~~~~~~~~~~~~lgk~pv~v~  183 (186)
T d1wdka3         136 NFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVN  183 (186)
T ss_dssp             GEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             heEeeccccCcccCCeEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence                    13331     222  3666666667778888887775443

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.86  E-value=4.2e-10  Score=100.04  Aligned_cols=186  Identities=14%  Similarity=0.091  Sum_probs=111.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhh-hhccCC-cccEEEeCChhhhcCCCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELV-DAAFPL-LKGVVATTDAVEACTGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~-~~~~~~-~~~v~~~~~~~~a~~~aD   83 (300)
                      |||.||||+||||++++..|++.|.-- ....+++.+|......... ....+. +..... ...............+.|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v-~~~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d   78 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPD-VPADEVIVLDSLTYAGNRA-NLAPVDADPRLRFVHGDIRDAGLLARELRGVD   78 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTT-SCCSEEEEEECCCTTCCGG-GGGGGTTCTTEEEEECCTTCHHHHHHHTTTCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCc-cCCceEEEEeCCCccccHh-HhhhhhcCCCeEEEEeccccchhhhccccccc
Confidence            599999999999999999999887521 0112677787642111111 001111 000000 000000112345678999


Q ss_pred             EEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH---HHHHHCCCCCCCcEEeeeh
Q 022227           84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL---ILKEFAPSIPAKNITCLTR  158 (300)
Q Consensus        84 vVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~---~~~~~~~~~p~~~i~~~t~  158 (300)
                      +|+|+|+.+...  ..+..+.+..|+.++.++++.+.++..+  ++|..|+..-.-..   -..+. ....+...++.+.
T Consensus        79 ~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~--~~I~~Ss~~~yg~~~~~~~~E~-~~~~p~~~Y~~sK  155 (322)
T d1r6da_          79 AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG--RVVHVSTNQVYGSIDSGSWTES-SPLEPNSPYAASK  155 (322)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC--EEEEEEEGGGGCCCSSSCBCTT-SCCCCCSHHHHHH
T ss_pred             eEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCc--eEEEeecceeecCCCCCCCCCC-CCCCCCCHHHHHH
Confidence            999998765422  1233456788999999999999988642  56666543211000   00011 0112234577888


Q ss_pred             hhHHHHHHHHHHHcCCCCCCeEEEEEecCCC--Cceeeec
Q 022227          159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHS--SSQYPDV  196 (300)
Q Consensus       159 ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg--~~~~p~~  196 (300)
                      +..+.+...++++.+++...+|...|+|.+.  +..+|.+
T Consensus       156 ~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~  195 (322)
T d1r6da_         156 AGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLF  195 (322)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHH
Confidence            8888888888999999999999999999654  3455554

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=2e-09  Score=96.12  Aligned_cols=171  Identities=13%  Similarity=0.083  Sum_probs=103.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCC-hhhhcCCCcE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD-AVEACTGVNI   84 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~-~~~a~~~aDv   84 (300)
                      |||+||||+||||++++..|+..+.      .+|+.+|...  .... ...+.....+ ...+++...+ .+.+++++|+
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~------~~V~~ld~~~--~~~~-~~~~~~~~~~-i~~Di~~~~~~~~~~~~~~d~   70 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDH------YEVYGLDIGS--DAIS-RFLNHPHFHF-VEGDISIHSEWIEYHVKKCDV   70 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTT------CEEEEEESCC--GGGG-GGTTCTTEEE-EECCTTTCSHHHHHHHHHCSE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC------CEEEEEeCCC--cchh-hhccCCCeEE-EECccCChHHHHHHHHhCCCc
Confidence            5999999999999999999987763      1788888753  1111 0011000000 0001111112 2236778999


Q ss_pred             EEEeCCCCCCCC--CcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH---HHHHHCCC------CCCCcE
Q 022227           85 AVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL---ILKEFAPS------IPAKNI  153 (300)
Q Consensus        85 Vi~~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~---~~~~~~~~------~p~~~i  153 (300)
                      |||+|+......  .+.......|+....++++.+.+..   .+.++++.....-..   ...+..+.      ..++..
T Consensus        71 Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~---~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  147 (342)
T d2blla1          71 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR---KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWI  147 (342)
T ss_dssp             EEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT---CEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGH
T ss_pred             cccccccccccccccCCcccccccccccccccccccccc---ccccccccccccccccccccccccccccccccCCCcch
Confidence            999998654222  1234567899999999999998874   345555543321000   00000000      011235


Q ss_pred             EeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          154 TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       154 ~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ++.+++..+++....++..|++..-++...+.|...
T Consensus       148 Y~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~  183 (342)
T d2blla1         148 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRL  183 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSC
T ss_pred             hhhcccchhhhhhhhhcccCceeEEeeccccccccc
Confidence            777888888998899999999988887777777543

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=98.85  E-value=8.1e-10  Score=97.78  Aligned_cols=173  Identities=11%  Similarity=0.103  Sum_probs=99.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh-ccCC-cccEEEeCChhhhcCCC--
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFPL-LKGVVATTDAVEACTGV--   82 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~-~~~~-~~~v~~~~~~~~a~~~a--   82 (300)
                      ||.||||+||||++++..|+++|+       +|+.+|........... ..+... .... ..++.-..++.++++++  
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~-------~V~~id~~~~~~~~~~~-~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~   73 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI-------DLIVFDNLSRKGATDNL-HWLSSLGNFEFVHGDIRNKNDVTRLITKYMP   73 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSTTHHHHH-HHHHTTCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC-------EEEEEECCCcccchhHH-HHhhccCCcEEEEcccCCHHHHHHHHHhcCC
Confidence            899999999999999999998875       78888843211111110 011110 0000 01111111345566654  


Q ss_pred             cEEEEeCCCCCCCC--CcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH----------------
Q 022227           83 NIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF----------------  144 (300)
Q Consensus        83 DvVi~~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~----------------  144 (300)
                      |+|||+|+......  .+..+....|+..++++++.+.+...+  +++++++........ ...                
T Consensus        74 d~Vih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~--~~i~~sS~~~~~~~~-~~~~~~~~~~~~~~~~~~~  150 (338)
T d1orra_          74 DSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSN--CNIIYSSTNKVYGDL-EQYKYNETETRYTCVDKPN  150 (338)
T ss_dssp             SEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTT--CEEEEEEEGGGGTTC-TTSCEEECSSCEEETTCTT
T ss_pred             ceEEeecccccccccccChHHHHHHHHHHHHHHHHhhhccccc--ccccccccccccccc-ccccccccccccccccccc
Confidence            99999997654221  244667888999999999999998653  345555433211100 000                


Q ss_pred             ----CCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          145 ----APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       145 ----~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                          ...+.+...++.+.+....+....++..+.....++...++|.++.
T Consensus       151 ~~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
T d1orra_         151 GYDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQF  200 (338)
T ss_dssp             CBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCC
T ss_pred             CcccCCccccccccccccchhhhhhhhhhhccCcccccccccceeecccc
Confidence                0000011223445556666677777888888877777767776654

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.84  E-value=6.2e-10  Score=100.90  Aligned_cols=178  Identities=13%  Similarity=0.082  Sum_probs=107.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEE-eCC------hhhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA-TTD------AVEA   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~-~~~------~~~a   78 (300)
                      |||.||||+||||++++..|+..+.-      .++++|........+    .+.+..  ...++.. ..|      ..+.
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~------vv~~~d~~~~~~~~~----~~~~~~--~~~~~~~~~~Dl~d~~~l~~~   68 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQD------TVVNIDKLTYAGNLE----SLSDIS--ESNRYNFEHADICDSAEITRI   68 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC------EEEEEECCCTTCCGG----GGTTTT--TCTTEEEEECCTTCHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC------EEEEEeCCCccccHH----HHHhhh--hcCCcEEEEccCCCHHHHHHH
Confidence            59999999999999999999987641      467787532111111    111110  0111111 112      2333


Q ss_pred             cC--CCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCC-------CeEEEEecCchhhHHHHH--H--H
Q 022227           79 CT--GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAP-------NCKVLVVANPANTNALIL--K--E  143 (300)
Q Consensus        79 ~~--~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~-------~~~viv~sNP~~~~~~~~--~--~  143 (300)
                      ++  ++|+|||+|+....+  ..+..+.+..|+..+.++.+.+.++...       ..++|.+|... +.....  .  +
T Consensus        69 ~~~~~~d~VihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~  147 (361)
T d1kewa_          69 FEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDE-VYGDLPHPDEVE  147 (361)
T ss_dssp             HHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGG-GGCCCCCGGGSC
T ss_pred             HHhCCCCEEEECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccce-eeCCCccCCccc
Confidence            33  589999999864311  1133556788999999999988776321       12456555422 110000  0  0


Q ss_pred             HC---------CCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC--ceeeec
Q 022227          144 FA---------PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS--SQYPDV  196 (300)
Q Consensus       144 ~~---------~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~--~~~p~~  196 (300)
                      ..         ...-+...++.+.+..+++...+++..+++...++...|+|.++.  +.+|.+
T Consensus       148 ~~~~~~~~~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~  211 (361)
T d1kewa_         148 NSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLV  211 (361)
T ss_dssp             TTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHH
T ss_pred             cccCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHHH
Confidence            00         001123457888899999999999999999999999999998764  455654

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=6e-09  Score=88.40  Aligned_cols=111  Identities=14%  Similarity=0.193  Sum_probs=74.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch---hhhhhh---hhhhhhhccCCcccEEEeCChh
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA---EALNGV---KMELVDAAFPLLKGVVATTDAV   76 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~---~~l~g~---~~dl~~~~~~~~~~v~~~~~~~   76 (300)
                      |+.+||.|+||+|++|++++..|++.+.+.     +|.++++++..   +.....   ..|+.+           ..+..
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~-----~v~~~~R~~~~~~~~~~~~i~~~~~D~~~-----------~~~~~   75 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFS-----KVTLIGRRKLTFDEEAYKNVNQEVVDFEK-----------LDDYA   75 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCS-----EEEEEESSCCCCCSGGGGGCEEEECCGGG-----------GGGGG
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCC-----EEEEEecChhhhcccccceeeeeeecccc-----------ccccc
Confidence            345699999999999999999999887543     68888875321   111100   011111           12567


Q ss_pred             hhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      ++++++|+||+++|... ...+..++...|.....++++.+.+...+  +++.+|.
T Consensus        76 ~~~~~~d~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~v~--~fi~~Ss  128 (232)
T d2bkaa1          76 SAFQGHDVGFCCLGTTR-GKAGAEGFVRVDRDYVLKSAELAKAGGCK--HFNLLSS  128 (232)
T ss_dssp             GGGSSCSEEEECCCCCH-HHHHHHHHHHHHTHHHHHHHHHHHHTTCC--EEEEECC
T ss_pred             ccccccccccccccccc-cccchhhhhhhcccccceeeecccccCcc--ccccCCc
Confidence            88999999999987642 12234556778999999999998876532  4555553

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.79  E-value=3.1e-09  Score=96.53  Aligned_cols=177  Identities=17%  Similarity=0.143  Sum_probs=105.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHh-cccCCCCCCeEEEEEecCC-c------hhhhhhhhhhhhhhcc--C--CcccEE-E
Q 022227            5 PVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPP-A------AEALNGVKMELVDAAF--P--LLKGVV-A   71 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~-~~~~~~~~~~~l~L~D~~~-~------~~~l~g~~~dl~~~~~--~--~~~~v~-~   71 (300)
                      -|||.||||+||||++++..|++ .+.       +|+.+|... .      .+..+.....+.....  +  ....+. .
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~-------~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNH-------SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALE   74 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC-------EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCC-------EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEE
Confidence            37999999999999999999986 443       789998411 0      0111111111221111  1  111111 1


Q ss_pred             eCC------hhh---hcCCCcEEEEeCCCCCCCC--CcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhH---
Q 022227           72 TTD------AVE---ACTGVNIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN---  137 (300)
Q Consensus        72 ~~~------~~~---a~~~aDvVi~~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~---  137 (300)
                      ..|      +.+   ..+++|+|||+|+......  .........|+....++.+.+.+...+  +++..+.....-   
T Consensus        75 ~~Di~d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~--~~~~~~s~~~~~~~~  152 (383)
T d1gy8a_          75 VGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCD--KIIFSSSAAIFGNPT  152 (383)
T ss_dssp             ESCTTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC--EEEEEEEGGGTBSCC
T ss_pred             ECcccCHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCc--ccccccccccccccc
Confidence            222      222   3357899999998653221  123445678999999999999988653  344444332210   


Q ss_pred             -HHHHHHHC-----CCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          138 -ALILKEFA-----PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       138 -~~~~~~~~-----~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                       -....+..     ....+...++.+.+...++...+++..|++...++...|+|....
T Consensus       153 ~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~  211 (383)
T d1gy8a_         153 MGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHED  211 (383)
T ss_dssp             C-----CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTT
T ss_pred             cccccccccccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCcc
Confidence             00000000     011123467888888889999999999999999999999996544

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=98.75  E-value=7e-08  Score=86.09  Aligned_cols=116  Identities=14%  Similarity=0.113  Sum_probs=72.5

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC------cccEEEeCChhhh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL------LKGVVATTDAVEA   78 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~------~~~v~~~~~~~~a   78 (300)
                      .+||+||||+||||++++..|++.|+       +|+...++.  ++...... +.+.....      ..++.-.....++
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~-------~V~~~vR~~--~~~~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~   80 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGY-------KVRGTARSA--SKLANLQK-RWDAKYPGRFETAVVEDMLKQGAYDEV   80 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHH-HHHHHSTTTEEEEECSCTTSTTTTTTT
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEeCCc--hhHHHHHH-hhhccccccccEEEeccccchhhhhhh
Confidence            36999999999999999999999875       665544432  22221110 11111000      0111111245578


Q ss_pred             cCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           79 CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      ++++|.|++.++... ...+.......|+..+.++.+.+.++.. --+++..|.
T Consensus        81 ~~~~~~v~~~a~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~~-v~~~i~~SS  132 (342)
T d1y1pa1          81 IKGAAGVAHIASVVS-FSNKYDEVVTPAIGGTLNALRAAAATPS-VKRFVLTSS  132 (342)
T ss_dssp             TTTCSEEEECCCCCS-CCSCHHHHHHHHHHHHHHHHHHHHTCTT-CCEEEEECC
T ss_pred             cccchhhhhhccccc-ccccccccccchhhhHHHHHHhhhcccc-ccccccccc
Confidence            999999999987653 3345566677899999999999988742 124444443

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.75  E-value=8.2e-09  Score=92.10  Aligned_cols=175  Identities=15%  Similarity=0.125  Sum_probs=108.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc--hhhhhhhhhhhhhhccCCcccEEEe-----CChh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA--AEALNGVKMELVDAAFPLLKGVVAT-----TDAV   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~--~~~l~g~~~dl~~~~~~~~~~v~~~-----~~~~   76 (300)
                      ++++|.||||+||+|++++..|.+.|.       +|..+|....  .+.+............... ++...     ....
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~d~~~~~   86 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ-------KVVGLDNFATGHQRNLDEVRSLVSEKQWSNF-KFIQGDIRNLDDCN   86 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSCCHHHHHHHHHHSCHHHHTTE-EEEECCTTSHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC-------EEEEEECCCCcchhhHHHHHHhhhhcccCCe-eEEeeccccccccc
Confidence            567999999999999999999998875       7888886321  1111111000000000000 11110     1233


Q ss_pred             hhcCCCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH----HHHHCCCCCC
Q 022227           77 EACTGVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEFAPSIPA  150 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~----~~~~~~~~p~  150 (300)
                      ....+.+.|++++....-+  ..+.......|+....++.+.+.+... . ++|..|... +...-    ..+..+ ..+
T Consensus        87 ~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~-~~i~~SS~~-vyg~~~~~~~~E~~~-~~p  162 (341)
T d1sb8a_          87 NACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKV-Q-SFTYAASSS-TYGDHPGLPKVEDTI-GKP  162 (341)
T ss_dssp             HHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-S-EEEEEEEGG-GGTTCCCSSBCTTCC-CCC
T ss_pred             cccccccccccccccccccccccCccchhheeehhHHHHHHHHHhcCC-c-eEEEcccce-eeCCCCCCCccCCCC-CCC
Confidence            4567889999987654311  234456788899999999999998753 2 455555322 11000    000001 112


Q ss_pred             CcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          151 KNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       151 ~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                      ...++.+.+..+++...+++..+++...+|...|+|.+.+
T Consensus       163 ~~~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~  202 (341)
T d1sb8a_         163 LSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQD  202 (341)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCC
T ss_pred             CCcchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcC
Confidence            3467888999999999999999999999997777897654

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=4e-09  Score=94.53  Aligned_cols=172  Identities=15%  Similarity=0.098  Sum_probs=97.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhh--hhhhhhhccCC-cccEEEeCChhhhcC--
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGV--KMELVDAAFPL-LKGVVATTDAVEACT--   80 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~--~~dl~~~~~~~-~~~v~~~~~~~~a~~--   80 (300)
                      +.|.||||+||||++++..|+..|.       +|+.+|.... ......  ...+.+..... ..++.-..+...+++  
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-------~V~~~d~~~~-~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~   73 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-------DCVVADNLSN-STYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEY   73 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSS-CCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-------eEEEEECCCC-cchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhcc
Confidence            3589999999999999999998874       7888885321 111100  00111110000 000000012233333  


Q ss_pred             CCcEEEEeCCCCCC--CCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH--------CCCCCC
Q 022227           81 GVNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF--------APSIPA  150 (300)
Q Consensus        81 ~aDvVi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~--------~~~~p~  150 (300)
                      +.|+|||+|+....  ..+........|+....++.+++++...+  ++|+.|...- .... .+.        .....+
T Consensus        74 ~~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~--~~i~~SS~~v-yg~~-~~~~~~~~~~e~~~~~p  149 (347)
T d1z45a2          74 KIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS--KFVFSSSATV-YGDA-TRFPNMIPIPEECPLGP  149 (347)
T ss_dssp             CCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC--EEEEEEEGGG-GCCG-GGSTTCCSBCTTSCCCC
T ss_pred             CCCEEEEccccccccccccCcccccccchhhhHHHHHHHHhcccc--eEEeecceee-ecCc-ccCCCCCccccccCCCC
Confidence            78999999986531  12344566778999999999999987532  4566554332 1100 000        000112


Q ss_pred             CcEEeeehhhHHHHHHHHHH--HcCCCCCCeEEEEEecCCC
Q 022227          151 KNITCLTRLDHNRALGQISE--KLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       151 ~~i~~~t~ld~~R~~~~la~--~l~v~~~~V~~~~V~G~hg  189 (300)
                      ...++.++...+++...+.+  ..+.+...++...|+|.+.
T Consensus       150 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~  190 (347)
T d1z45a2         150 TNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHP  190 (347)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCT
T ss_pred             CChhHhHHHHHHHHHHHHHHhhccCCcEEEEeecceEeecC
Confidence            34577778877776666544  3456666777777787653

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=5.5e-09  Score=93.35  Aligned_cols=179  Identities=13%  Similarity=0.027  Sum_probs=98.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch----hhhhhhhhhhhhhccCCcccEEE----eCChhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA----EALNGVKMELVDAAFPLLKGVVA----TTDAVE   77 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~----~~l~g~~~dl~~~~~~~~~~v~~----~~~~~~   77 (300)
                      +||.||||+||||++++..|++.|.       +++.+|.....    .........+.........-+..    ...+.+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~-------~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~   75 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY-------LPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQR   75 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC-------CEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHH
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC-------EEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeeccccccccc
Confidence            5899999999999999999998875       67888742110    00000000011111011100011    011233


Q ss_pred             hcC--CCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH---C-CCCC
Q 022227           78 ACT--GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF---A-PSIP  149 (300)
Q Consensus        78 a~~--~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~---~-~~~p  149 (300)
                      ++.  +.|+|+|+|+.+...  ..++.+....|+....++.+++++++.+  +++..|.... ...--...   . +...
T Consensus        76 ~~~~~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~--~~i~~ss~~~-~~~~~~~~~~~~~~~~~  152 (346)
T d1ek6a_          76 LFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK--NLVFSSSATV-YGNPQYLPLDEAHPTGG  152 (346)
T ss_dssp             HHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC--EEEEEEEGGG-GCSCSSSSBCTTSCCCC
T ss_pred             cccccccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcc--ccccccccee-eeccccccccccccccc
Confidence            444  455788898865311  1134566888999999999999988642  4555543322 11000000   0 0011


Q ss_pred             CCcEEeeehhhHHHHHHHHHHH-cCCCCCCeEEEEEecCCCCceee
Q 022227          150 AKNITCLTRLDHNRALGQISEK-LNVQVSDVKNVIIWGNHSSSQYP  194 (300)
Q Consensus       150 ~~~i~~~t~ld~~R~~~~la~~-l~v~~~~V~~~~V~G~hg~~~~p  194 (300)
                      +...++.+.+-..+....+++. .+.+...++...++|.+....+.
T Consensus       153 ~~~~Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~  198 (346)
T d1ek6a_         153 CTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIG  198 (346)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCC
T ss_pred             cCChHHHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcC
Confidence            1224566666666665555554 58888888888889987654443

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.3e-09  Score=93.83  Aligned_cols=171  Identities=12%  Similarity=-0.020  Sum_probs=102.4

Q ss_pred             cEE-EEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch---hhhhhhhhhhhhhccCCcccEEE-eCC------
Q 022227            6 VRV-LVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA---EALNGVKMELVDAAFPLLKGVVA-TTD------   74 (300)
Q Consensus         6 ~kV-~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~---~~l~g~~~dl~~~~~~~~~~v~~-~~~------   74 (300)
                      +|| .||||+||||++++..|+..|+       +|+-+|+..+.   .+++...   .+.......++.. ..|      
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~-------~V~~i~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Dl~d~~~   70 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY-------EVHGIVRRSSSFNTGRIEHLY---KNPQAHIEGNMKLHYGDLTDSTC   70 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSSCCCTTTGGGC------------CEEEEECCTTCHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC-------EEEEEECCCcccchhhHHHHh---hchhhhccCCcEEEEeecCCchh
Confidence            489 7999999999999999999876       78888875321   1111110   1111011112211 112      


Q ss_pred             hhhhcC--CCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCC-eEEEEecCchhhHHH----HHHHHC
Q 022227           75 AVEACT--GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPN-CKVLVVANPANTNAL----ILKEFA  145 (300)
Q Consensus        75 ~~~a~~--~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~-~~viv~sNP~~~~~~----~~~~~~  145 (300)
                      ...+++  +.++|++.++.....  .....+..+.|+..+.++.+.+++++..+ .++|.+|. +.+.-.    -+.+. 
T Consensus        71 ~~~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS-~~vyg~~~~~~~~E~-  148 (347)
T d1t2aa_          71 LVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAST-SELYGKVQEIPQKET-  148 (347)
T ss_dssp             HHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEE-GGGTCSCSSSSBCTT-
T ss_pred             hHHHHhhcccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecc-hheecCCCCCCCCCC-
Confidence            222332  556888877654311  12345567889999999999999876433 35565553 221000    00011 


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      ....+...++.+++..+++...+++..+++...++...|+|..
T Consensus       149 ~~~~P~~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~  191 (347)
T d1t2aa_         149 TPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR  191 (347)
T ss_dssp             SCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCC
Confidence            1122345688889988888888888999998888888888864

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.59  E-value=4.6e-09  Score=93.25  Aligned_cols=174  Identities=9%  Similarity=-0.054  Sum_probs=101.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc---hhhhhhhhhhhhhhccCCcccEEE-eCC------h
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA---AEALNGVKMELVDAAFPLLKGVVA-TTD------A   75 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~---~~~l~g~~~dl~~~~~~~~~~v~~-~~~------~   75 (300)
                      +|+.||||+||||++++..|++.|+       +|+.+|...+   .+++.....+..+..   ...+.. ..|      .
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Di~~~~~~   71 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY-------EVHGLIRRSSNFNTQRINHIYIDPHNVN---KALMKLHYADLTDASSL   71 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSSCCCTTTTTTC-----------CCEEEEECCTTCHHHH
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC-------EEEEEECCCcccchhhhhhhhhhhhhcc---ccceEEEEccccCHHHH
Confidence            5899999999999999999999886       7888887421   122221111111110   011111 111      2


Q ss_pred             hhhc--CCCcEEEEeCCCCCCCC--CcHHHHHHhhHHHHHHHHHHHhhhcCC--CeEEEEecCchhhHHHH---HHHHCC
Q 022227           76 VEAC--TGVNIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAP--NCKVLVVANPANTNALI---LKEFAP  146 (300)
Q Consensus        76 ~~a~--~~aDvVi~~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~~~--~~~viv~sNP~~~~~~~---~~~~~~  146 (300)
                      ..++  .+.|+|||+|+......  .+..+....|......+.+++++.+..  ....++.++.+......   ..+. .
T Consensus        72 ~~~~~~~~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~E~-~  150 (339)
T d1n7ha_          72 RRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSET-T  150 (339)
T ss_dssp             HHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBCTT-S
T ss_pred             HHHHhhhccchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCCCCCCCC-C
Confidence            2223  36799999998753221  234456777888888887777654311  11234444333211100   0000 0


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                      ...+...++.+.+..+.+....++..+++...+|...|+|.++.
T Consensus       151 ~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~  194 (339)
T d1n7ha_         151 PFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRG  194 (339)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCC
Confidence            12234467888998888888888999999999999889997643

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=98.56  E-value=2.8e-08  Score=85.90  Aligned_cols=101  Identities=19%  Similarity=0.197  Sum_probs=68.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC--CCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--GVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~--~aD   83 (300)
                      |||.||||+||||++++..|...+        +++.+|....  .   ...|+.+..           ...+.++  +.|
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g--------~~v~~~~~~~--~---~~~Dl~~~~-----------~~~~~i~~~~~D   56 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG--------NLIALDVHSK--E---FCGDFSNPK-----------GVAETVRKLRPD   56 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS--------EEEEECTTCS--S---SCCCTTCHH-----------HHHHHHHHHCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC--------CEEEEECCCc--c---ccCcCCCHH-----------HHHHHHHHcCCC
Confidence            699999999999999999887765        4556666431  1   223444322           2334454  359


Q ss_pred             EEEEeCCCCC--CCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCc
Q 022227           84 IAVMVGGFPR--KEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP  133 (300)
Q Consensus        84 vVi~~ag~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP  133 (300)
                      +|||+||...  ....+.......|......+.+.+++.+   .+++++|+.
T Consensus        57 ~Vih~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~~ss~  105 (298)
T d1n2sa_          57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETG---AWVVHYSTD  105 (298)
T ss_dssp             EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT---CEEEEEEEG
T ss_pred             EEEEecccccccccccCccccccccccccccchhhhhccc---ccccccccc
Confidence            9999998653  1223455567889999999999988774   456666654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.52  E-value=1.2e-06  Score=72.40  Aligned_cols=79  Identities=16%  Similarity=0.196  Sum_probs=56.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhh--------hhhhcc--CCcccEEEeCCh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME--------LVDAAF--PLLKGVVATTDA   75 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~d--------l~~~~~--~~~~~v~~~~~~   75 (300)
                      |||+|+| +|+||..+|..|+..|.       +|..+|+++  ++.+.....        +.+...  ....++..+++.
T Consensus         1 MkI~ViG-lG~vGl~~a~~la~~g~-------~V~g~D~n~--~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~   70 (202)
T d1mv8a2           1 MRISIFG-LGYVGAVCAGCLSARGH-------EVIGVDVSS--TKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDF   70 (202)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCH
T ss_pred             CEEEEEC-CCHhHHHHHHHHHhCCC-------cEEEEeCCH--HHHHHhcccCCcccchhhhhhhhhhhcccccccCCCH
Confidence            6999999 89999999999998875       899999963  443322110        000000  012467788899


Q ss_pred             hhhcCCCcEEEEeCCCCCC
Q 022227           76 VEACTGVNIAVMVGGFPRK   94 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~   94 (300)
                      .+++++||+++++.+.|..
T Consensus        71 ~~~i~~~d~i~i~VpTP~~   89 (202)
T d1mv8a2          71 KKAVLDSDVSFICVGTPSK   89 (202)
T ss_dssp             HHHHHTCSEEEECCCCCBC
T ss_pred             HHHHhhCCEEEEecCcccc
Confidence            9999999999999887753

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.51  E-value=2.4e-07  Score=76.84  Aligned_cols=165  Identities=16%  Similarity=0.111  Sum_probs=92.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ++++|+||||+|++|++++..|++.|.     .+.++.+.++  .+++..    +.........++.-..+..++++++|
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~-----~v~v~~~~R~--~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~d   70 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSD-----KFVAKGLVRS--AQGKEK----IGGEADVFIGDITDADSINPAFQGID   70 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTT-----TCEEEEEESC--HHHHHH----TTCCTTEEECCTTSHHHHHHHHTTCS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-----cEEEEEEcCC--HHHHHh----ccCCcEEEEeeeccccccccccccce
Confidence            356999999999999999999998763     1234444443  222221    11100000001111124567899999


Q ss_pred             EEEEeCCCCCCC---------------CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCC
Q 022227           84 IAVMVGGFPRKE---------------GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI  148 (300)
Q Consensus        84 vVi~~ag~~~~~---------------g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~  148 (300)
                      .||++++.....               ..........|+...+.++........ . .....+....        ..+..
T Consensus        71 ~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~s~~~~--------~~~~~  140 (252)
T d2q46a1          71 ALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGV-K-HIVVVGSMGG--------TNPDH  140 (252)
T ss_dssp             EEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTC-S-EEEEEEETTT--------TCTTC
T ss_pred             eeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccccc-c-cccccccccc--------CCCCc
Confidence            999998753210               011223355677788888888777764 2 2333332111        00111


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      |..............+...+.+..|++..-++...|+|..+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilRp~~v~g~~~  181 (252)
T d2q46a1         141 PLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEG  181 (252)
T ss_dssp             GGGGGGGCCHHHHHHHHHHHHHHSSSCEEEEEECEEECSCT
T ss_pred             ccccccccchhhhhhhhhhhhhcccccceeecceEEECCCc
Confidence            21111222334445566677788898888888777888764

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.49  E-value=1.8e-07  Score=77.49  Aligned_cols=108  Identities=21%  Similarity=0.164  Sum_probs=68.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch--hhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--EALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~--~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      ++||+|+||+|++|++++..|++.+...     ++....+++..  ++++....|+.+.             ......+.
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~-----~v~~~~r~~~~~~~~~~~~~~d~~~~-------------~~~~~~~~   63 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLA-----KVIAPARKALAEHPRLDNPVGPLAEL-------------LPQLDGSI   63 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCC-----EEECCBSSCCCCCTTEECCBSCHHHH-------------GGGCCSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeE-----EEEEEeCCchhhcccccccccchhhh-------------hhccccch
Confidence            6899999999999999999999877421     45544433211  1111111111110             12223467


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      |.||+++|..........++...|.....++++.+++...+  +++.+|.
T Consensus        64 d~vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~--~~i~~Ss  111 (212)
T d2a35a1          64 DTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGAR--HYLVVSA  111 (212)
T ss_dssp             SEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCC--EEEEECC
T ss_pred             heeeeeeeeeccccccccccccchhhhhhhccccccccccc--ccccccc
Confidence            99999988765444455667788999999999998886532  4565553

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.49  E-value=4.1e-07  Score=73.45  Aligned_cols=102  Identities=15%  Similarity=0.097  Sum_probs=66.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhh-hhhhccC----CcccEEEeCChhhhc
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME-LVDAAFP----LLKGVVATTDAVEAC   79 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~d-l~~~~~~----~~~~v~~~~~~~~a~   79 (300)
                      ++||+|+| +|.+|+.++..|.+.|+       ++.++|+++  ++++..... ......+    .......+++..+++
T Consensus         1 sk~iaIiG-aG~~G~~~A~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~   70 (184)
T d1bg6a2           1 SKTYAVLG-LGNGGHAFAAYLALKGQ-------SVLAWDIDA--QRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV   70 (184)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH
T ss_pred             CCEEEEEC-ccHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh
Confidence            36999999 79999999999999875       899999863  333322110 0000011    113344567889999


Q ss_pred             CCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           80 TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        80 ~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      +++|+||++.-.                ....+++++++.+-.++..++...|
T Consensus        71 ~~aD~iii~v~~----------------~~~~~~~~~i~~~l~~~~~iv~~~g  107 (184)
T d1bg6a2          71 KDADVILIVVPA----------------IHHASIAANIASYISEGQLIILNPG  107 (184)
T ss_dssp             TTCSEEEECSCG----------------GGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred             cCCCEEEEEEch----------------hHHHHHHHHhhhccCCCCEEEEeCC
Confidence            999999997311                1234677777777666665544434

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.49  E-value=7e-07  Score=71.29  Aligned_cols=92  Identities=20%  Similarity=0.199  Sum_probs=59.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+||| +|.+|++++..|.+.|+       +|..+|+++  +.++ .+.+..  .    .. ... +..+++++||+|
T Consensus         1 MkI~iIG-~G~mG~~lA~~l~~~g~-------~V~~~d~~~--~~~~-~a~~~~--~----~~-~~~-~~~~~~~~~DiI   61 (165)
T d2f1ka2           1 MKIGVVG-LGLIGASLAGDLRRRGH-------YLIGVSRQQ--STCE-KAVERQ--L----VD-EAG-QDLSLLQTAKII   61 (165)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHH-HHHHTT--S----CS-EEE-SCGGGGTTCSEE
T ss_pred             CEEEEEe-ecHHHHHHHHHHHHCCC-------EEEEEECCc--hHHH-HHHHhh--c----cc-eee-eecccccccccc
Confidence            6999999 79999999999988775       799999863  3332 111110  0    00 122 345789999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      |++.  |              ...+.++.+.+..+-+++..++..++
T Consensus        62 ilav--p--------------~~~~~~vl~~l~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          62 FLCT--P--------------IQLILPTLEKLIPHLSPTAIVTDVAS   92 (165)
T ss_dssp             EECS--C--------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             cccC--c--------------Hhhhhhhhhhhhhhcccccceeeccc
Confidence            9863  2              13344666667666655665555543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.48  E-value=7.9e-08  Score=84.44  Aligned_cols=167  Identities=13%  Similarity=-0.007  Sum_probs=99.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEE-eCC------hhhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA-TTD------AVEA   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~-~~~------~~~a   78 (300)
                      +||.||||+||||++++..|+.+|+       +|+.+|......... .   +.+...  ..++.. ..|      ..+.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~-------~V~~~~r~~~~~~~~-~---l~~~~~--~~~~~~~~~Dl~d~~~~~~~   67 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY-------RVHGLVARRSSDTRW-R---LRELGI--EGDIQYEDGDMADACSVQRA   67 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSSCCCH-H---HHHTTC--GGGEEEEECCTTCHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEECCCCcccHH-H---HHHhcc--cCCcEEEEccccChHHhhhh
Confidence            4899999999999999999998875       788888753211111 0   111100  001111 111      1111


Q ss_pred             c--CCCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH----HHHHCCCCCC
Q 022227           79 C--TGVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEFAPSIPA  150 (300)
Q Consensus        79 ~--~~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~----~~~~~~~~p~  150 (300)
                      +  ...++++++|+.....  ..+..+.+..|+....++++.+.++..+ .+++..| ........    ..+. ....+
T Consensus        68 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~-~~~i~~S-s~~~~~~~~~~~~~E~-~~~~p  144 (321)
T d1rpna_          68 VIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPE-TRFYQAS-TSEMFGLIQAERQDEN-TPFYP  144 (321)
T ss_dssp             HHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTT-SEEEEEE-EGGGGCSCSSSSBCTT-SCCCC
T ss_pred             hccccccccccccccccccccccchHHHHhhhhhchHHHHHHHHHhCCC-ccccccc-chhhcCcccCCCCCCC-CCccc
Confidence            2  2456777776554321  2345667889999999999999998753 2344443 33211000    0000 00112


Q ss_pred             CcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          151 KNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       151 ~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      ...++.+.+...++...+++..+++...++...|+|..
T Consensus       145 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~  182 (321)
T d1rpna_         145 RSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPL  182 (321)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             cChhHHHHHHHHHHHHHHHhhcCCcEEEEEEecccCCC
Confidence            23567788888888888888999998888877788853

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=5e-08  Score=84.45  Aligned_cols=165  Identities=16%  Similarity=0.158  Sum_probs=102.2

Q ss_pred             EEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh-hhhhhhhhhccCCcccEEEeCChhhhcCCCcEEE
Q 022227            8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN-GVKMELVDAAFPLLKGVVATTDAVEACTGVNIAV   86 (300)
Q Consensus         8 V~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~-g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvVi   86 (300)
                      |+||||+||||++++..|++.|..      +|+.+|......+.. ....++.+..  ..............+.++++|+
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~------~V~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~   73 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGIT------DILVVDNLKDGTKFVNLVDLNIADYM--DKEDFLIQIMAGEEFGDVEAIF   73 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCC------CEEEEECCSSGGGGHHHHTSCCSEEE--EHHHHHHHHHTTCCCSSCCEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCC------eEEEEECCCCcchhhcccccchhhhc--cchHHHHHHhhhhcccchhhhh
Confidence            789999999999999999988742      577787422111111 0001111000  0000000001123457889999


Q ss_pred             EeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCC-------CCCCcEEeeehh
Q 022227           87 MVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS-------IPAKNITCLTRL  159 (300)
Q Consensus        87 ~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~-------~p~~~i~~~t~l  159 (300)
                      +.|+...............|......+.+...+..   +++++.+.......     ..+.       .++...++.+.+
T Consensus        74 ~~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---i~~v~~ss~~~~~~-----~~~~~~~~~~~~~~~~~Y~~~K~  145 (307)
T d1eq2a_          74 HEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE---IPFLYASSAATYGG-----RTSDFIESREYEKPLNVYGYSKF  145 (307)
T ss_dssp             ECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHT---CCEEEEEEGGGGTT-----CCSCBCSSGGGCCCSSHHHHHHH
T ss_pred             hhccccccccccccccccccccccccccccccccc---cccccccccccccc-----ccccccccccccccccccccccc
Confidence            99987665555666677778899999998888874   34666664432110     0000       112235677888


Q ss_pred             hHHHHHHHHHHHcCCCCCCeEEEEEecCC
Q 022227          160 DHNRALGQISEKLNVQVSDVKNVIIWGNH  188 (300)
Q Consensus       160 d~~R~~~~la~~l~v~~~~V~~~~V~G~h  188 (300)
                      ...++...+++..+.+...++...|+|..
T Consensus       146 ~~e~~~~~~~~~~~~~~~~~r~~~vyGp~  174 (307)
T d1eq2a_         146 LFDEYVRQILPEANSQIVGFRYFNVYGPR  174 (307)
T ss_dssp             HHHHHHHHHGGGCSSCEEEEEECEEESSS
T ss_pred             hhhhhccccccccccccccccceeEeecc
Confidence            88888888889999999999999899953

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=98.39  E-value=2.1e-07  Score=82.75  Aligned_cols=117  Identities=16%  Similarity=0.097  Sum_probs=69.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhh--hhhhhccCCcccEEEeCChhhhcC--
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM--ELVDAAFPLLKGVVATTDAVEACT--   80 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~--dl~~~~~~~~~~v~~~~~~~~a~~--   80 (300)
                      .+||.||||+||||++++..|++.|.       +|+.+|+...  .......  ...+.......++.-.....++++  
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~-------~V~~~~r~~~--~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~   78 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGA-------TVKGYSLTAP--TVPSLFETARVADGMQSEIGDIRDQNKLLESIREF   78 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCS--SSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCCC--ccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhc
Confidence            47999999999999999999999875       7888987542  1111100  000000000000000011234444  


Q ss_pred             CCcEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           81 GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      ..|+|+++|+.+...  .....+....|+....++.+++.+....  .+++++.
T Consensus        79 ~~~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~--~~~~~~s  130 (356)
T d1rkxa_          79 QPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGV--KAVVNIT  130 (356)
T ss_dssp             CCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCC--CEEEEEC
T ss_pred             hhhhhhhhhccccccccccCCccccccccccchhhhhhhhccccc--ccccccc
Confidence            458999998764311  1123456778999999999999998643  3444443

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.33  E-value=7.5e-07  Score=72.43  Aligned_cols=101  Identities=10%  Similarity=0.051  Sum_probs=64.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChhhhcCCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEACTGV   82 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~~a~~~a   82 (300)
                      |||+|+| +|..|+++|..|...+.       ++.|+.+..+++..+.....-.+....   ....+..+++..++++++
T Consensus         1 MkI~ViG-aG~~GtalA~~la~~g~-------~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a   72 (180)
T d1txga2           1 MIVSILG-AGAMGSALSVPLVDNGN-------EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENA   72 (180)
T ss_dssp             CEEEEES-CCHHHHHHHHHHHHHCC-------EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTC
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhcc
Confidence            6999999 79999999999998763       788987643333222211111111111   124566678889999999


Q ss_pred             cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEec
Q 022227           83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA  131 (300)
Q Consensus        83 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~s  131 (300)
                      |+||++-  |              ...++++++.+..+-++. .+++++
T Consensus        73 d~Ii~av--p--------------s~~~~~~~~~l~~~l~~~-~ii~~t  104 (180)
T d1txga2          73 EVVLLGV--S--------------TDGVLPVMSRILPYLKDQ-YIVLIS  104 (180)
T ss_dssp             SEEEECS--C--------------GGGHHHHHHHHTTTCCSC-EEEECC
T ss_pred             chhhccc--c--------------hhhhHHHHHhhccccccc-eecccc
Confidence            9999963  2              133456777777776543 445444

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=6.3e-06  Score=64.59  Aligned_cols=99  Identities=12%  Similarity=0.114  Sum_probs=59.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||+|+||+|.||+-+...|++...+.   ..+++++.....    .+.........     .........++++++|++
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p---~~~l~~~~ss~s----~g~~~~~~~~~-----~~~~~~~~~~~~~~~Div   69 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFD---AIRPVFFSTSQL----GQAAPSFGGTT-----GTLQDAFDLEALKALDII   69 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGG---GSEEEEEESSST----TSBCCGGGTCC-----CBCEETTCHHHHHTCSEE
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCC---eeEEEEeecccc----ccccccccCCc-----eeeecccchhhhhcCcEE
Confidence            499999999999999998777653322   127888865432    11111111111     011122234578999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      |++++                .+..+++++.+.+.+.   ..+|++|.++
T Consensus        70 F~a~~----------------~~~s~~~~~~~~~~g~---~~~VID~Ss~  100 (146)
T d1t4ba1          70 VTCQG----------------GDYTNEIYPKLRESGW---QGYWIDAASS  100 (146)
T ss_dssp             EECSC----------------HHHHHHHHHHHHHTTC---CCEEEECSST
T ss_pred             EEecC----------------chHHHHhhHHHHhcCC---CeecccCCcc
Confidence            99863                2445567777766643   3467787766

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=1.2e-06  Score=69.33  Aligned_cols=101  Identities=12%  Similarity=0.126  Sum_probs=64.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+|+| +|.+|+.++..|.+.|.       ++.++++.+  +..+...  ........ .......+..+++.++|+|
T Consensus         1 MkI~IiG-aG~iG~~~a~~L~~~G~-------~V~~~~r~~--~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~D~i   67 (167)
T d1ks9a2           1 MKITVLG-CGALGQLWLTALCKQGH-------EVQGWLRVP--QPYCSVN--LVETDGSI-FNESLTANDPDFLATSDLL   67 (167)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSC--CSEEEEE--EECTTSCE-EEEEEEESCHHHHHTCSEE
T ss_pred             CEEEEEC-cCHHHHHHHHHHHHCCC-------ceEEEEcCH--HHhhhhc--cccCCccc-cccccccchhhhhcccceE
Confidence            6999999 69999999999998875       799999864  2222111  11111111 1222333556788999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      |++.-.+                -+.+..+.+..+-.++..++.+.|=.+
T Consensus        68 ii~vka~----------------~~~~~~~~l~~~~~~~~~Iv~~qNG~~  101 (167)
T d1ks9a2          68 LVTLKAW----------------QVSDAVKSLASTLPVTTPILLIHNGMG  101 (167)
T ss_dssp             EECSCGG----------------GHHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred             EEeeccc----------------chHHHHHhhccccCcccEEeeccCccc
Confidence            9984221                123556666666555677888888664

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.19  E-value=1.2e-06  Score=74.94  Aligned_cols=149  Identities=13%  Similarity=0.129  Sum_probs=84.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC--CCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--GVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~--~aD   83 (300)
                      |||.||||+||+|++++..|...|+       +++.+|+.+         .|+.+..           +..+.++  +.|
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~-------~Vi~~~r~~---------~D~~d~~-----------~~~~~l~~~~~d   54 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV-------EVIPTDVQD---------LDITNVL-----------AVNKFFNEKKPN   54 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE-------EEEEECTTT---------CCTTCHH-----------HHHHHHHHHCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-------EEEEeechh---------ccCCCHH-----------HHHHHHHHcCCC
Confidence            7999999999999999999988775       788888752         2333322           2233443  569


Q ss_pred             EEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCC--CCcE-Eeeeh
Q 022227           84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIP--AKNI-TCLTR  158 (300)
Q Consensus        84 vVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p--~~~i-~~~t~  158 (300)
                      +||++|+.....  ..........|......+.+.......   .++..+... +..     .....|  .... ...+.
T Consensus        55 ~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~---~~~~~ss~~-v~~-----~~~~~~~~e~~~~~~~~~  125 (281)
T d1vl0a_          55 VVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA---EIVQISTDY-VFD-----GEAKEPITEFDEVNPQSA  125 (281)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC---EEEEEEEGG-GSC-----SCCSSCBCTTSCCCCCSH
T ss_pred             EEEeeccccccccccccchhhcccccccccccccccccccc---cccccccce-eee-----ccccccccccccccchhh
Confidence            999998765311  112344556677777777777766632   334433221 100     000000  0001 01111


Q ss_pred             hh-HHHHHHHHHHHcCCCCCCeEEEEEecCCCC
Q 022227          159 LD-HNRALGQISEKLNVQVSDVKNVIIWGNHSS  190 (300)
Q Consensus       159 ld-~~R~~~~la~~l~v~~~~V~~~~V~G~hg~  190 (300)
                      .. +......+.+..+.+..-++...|+|..++
T Consensus       126 ~~~~k~~~e~~~~~~~~~~~i~R~~~vyG~~~~  158 (281)
T d1vl0a_         126 YGKTKLEGENFVKALNPKYYIVRTAWLYGDGNN  158 (281)
T ss_dssp             HHHHHHHHHHHHHHHCSSEEEEEECSEESSSSC
T ss_pred             hhhhhhHHHHHHHHhCCCccccceeEEeCCCcc
Confidence            11 112233445566777777888788887543

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.17  E-value=2e-06  Score=70.51  Aligned_cols=75  Identities=20%  Similarity=0.277  Sum_probs=53.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc----cCCcccEEEeCChhhhc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA----FPLLKGVVATTDAVEAC   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~----~~~~~~v~~~~~~~~a~   79 (300)
                      .+.||+|+| +|..|++++..|...+.       +|.|+++++  +.++.....=.+..    ..+..++..++++.+++
T Consensus         6 ~m~KI~ViG-aG~wGtAlA~~La~~g~-------~V~l~~r~~--~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~   75 (189)
T d1n1ea2           6 YLNKAVVFG-SGAFGTALAMVLSKKCR-------EVCVWHMNE--EEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAY   75 (189)
T ss_dssp             CEEEEEEEC-CSHHHHHHHHHHHTTEE-------EEEEECSCH--HHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHH
T ss_pred             eeceEEEEC-CCHHHHHHHHHHHHcCC-------eEEEEEecH--HHHHHHhhcccccccccccccccccccchhhhhcc
Confidence            345899999 79999999999987753       799999863  43332111101111    12346888999999999


Q ss_pred             CCCcEEEEe
Q 022227           80 TGVNIAVMV   88 (300)
Q Consensus        80 ~~aDvVi~~   88 (300)
                      ++||+||++
T Consensus        76 ~~ad~iiia   84 (189)
T d1n1ea2          76 NGAEIILFV   84 (189)
T ss_dssp             TTCSCEEEC
T ss_pred             CCCCEEEEc
Confidence            999999997

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.05  E-value=9.7e-06  Score=64.28  Aligned_cols=64  Identities=19%  Similarity=0.292  Sum_probs=48.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+||| .|.+|+.++..|+..|+       ++..+|+++  ++++.    +...      ......+..++++++|+|
T Consensus         1 MkIgiIG-lG~MG~~~A~~L~~~G~-------~V~~~d~~~--~~~~~----~~~~------~~~~~~~~~e~~~~~d~i   60 (161)
T d1vpda2           1 MKVGFIG-LGIMGKPMSKNLLKAGY-------SLVVSDRNP--EAIAD----VIAA------GAETASTAKAIAEQCDVI   60 (161)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSCH--HHHHH----HHHT------TCEECSSHHHHHHHCSEE
T ss_pred             CEEEEEe-hhHHHHHHHHHHHHCCC-------eEEEEeCCc--chhHH----HHHh------hhhhcccHHHHHhCCCeE
Confidence            5999999 89999999999998875       799999863  33332    2221      122345778899999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++-
T Consensus        61 i~~v   64 (161)
T d1vpda2          61 ITML   64 (161)
T ss_dssp             EECC
T ss_pred             EEEc
Confidence            9973

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=0.0001  Score=62.78  Aligned_cols=162  Identities=14%  Similarity=0.196  Sum_probs=95.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-----cccEEEeC-----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-----LKGVVATT-----   73 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-----~~~v~~~~-----   73 (300)
                      +.+.+.||||++-||.+++..|++.|.       .|++.|++  +++++..+.++.......     ..+++-..     
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~-------~Vv~~~r~--~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~   79 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGL-------KVVGCART--VGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSM   79 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESC--HHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHH
Confidence            456799999999999999999999885       79999986  456665555554332110     01111000     


Q ss_pred             --ChhhhcCCCcEEEEeCCCCCCC---CCcHH---HHHHhh----HHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           74 --DAVEACTGVNIAVMVGGFPRKE---GMERK---DVMSKN----VSIYKAQASALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        74 --~~~~a~~~aDvVi~~ag~~~~~---g~~r~---dl~~~N----~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                        ...+.+...|++|+.||.....   ..+..   ..+..|    .-..+.+++.+++...++..+|+++.....     
T Consensus        80 v~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~-----  154 (257)
T d1xg5a_          80 FSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGH-----  154 (257)
T ss_dssp             HHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGT-----
T ss_pred             HHHHHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhc-----
Confidence              1233356789999999875422   12222   234445    445566677766654334578887765531     


Q ss_pred             HHHCCCCCCCc--EEeeehhhHHHHHHHHHHHcCCCCCCeEEEE
Q 022227          142 KEFAPSIPAKN--ITCLTRLDHNRALGQISEKLNVQVSDVKNVI  183 (300)
Q Consensus       142 ~~~~~~~p~~~--i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~  183 (300)
                          ...|...  .++.++--...+.+.+|.++.-.+..|+.-.
T Consensus       155 ----~~~p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~  194 (257)
T d1xg5a_         155 ----RVLPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATC  194 (257)
T ss_dssp             ----SCCSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             ----CCCCCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEE
Confidence                1222211  2455555556677778887744455666333

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=98.02  E-value=2.8e-06  Score=73.17  Aligned_cols=160  Identities=12%  Similarity=0.050  Sum_probs=82.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh-hhhh-hhhhhccC-CcccEEEeCChhhhcC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN-GVKM-ELVDAAFP-LLKGVVATTDAVEACT   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~-g~~~-dl~~~~~~-~~~~v~~~~~~~~a~~   80 (300)
                      +++||.||||+|++|++++..|+..|.       +|+.+++++...... .... .+.+.... ...++.-.....++++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~-------~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~   74 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH-------PTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK   74 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-------CEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-------EEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhcc
Confidence            457899999999999999999998874       577777643211111 0101 11111000 0011111123567789


Q ss_pred             CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehhh
Q 022227           81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD  160 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld  160 (300)
                      +++.++++++.....         .|......+...+.+...  .++++.|.-...      ......+ .. ...+...
T Consensus        75 ~~~~~~~~~~~~~~~---------~~~~~~~~~l~~a~~~~~--~~~v~~Ss~g~~------~~~~~~~-~~-~~~~~~~  135 (312)
T d1qyda_          75 QVDVVISALAGGVLS---------HHILEQLKLVEAIKEAGN--IKRFLPSEFGMD------PDIMEHA-LQ-PGSITFI  135 (312)
T ss_dssp             TCSEEEECCCCSSSS---------TTTTTHHHHHHHHHHSCC--CSEEECSCCSSC------TTSCCCC-CS-STTHHHH
T ss_pred             Ccchhhhhhhhcccc---------cchhhhhHHHHHHHHhcC--CcEEEEeecccc------CCCcccc-cc-hhhhhhH
Confidence            999999987543211         122223445555555542  356666532110      0000111 11 1222334


Q ss_pred             HHHHHHHHHHHcCCCCCCeEEEEEecCCC
Q 022227          161 HNRALGQISEKLNVQVSDVKNVIIWGNHS  189 (300)
Q Consensus       161 ~~R~~~~la~~l~v~~~~V~~~~V~G~hg  189 (300)
                      ..+......+..+++..-++...++|...
T Consensus       136 ~~~~~~~~~~~~~~~~~i~r~~~~~g~~~  164 (312)
T d1qyda_         136 DKRKVRRAIEAASIPYTYVSSNMFAGYFA  164 (312)
T ss_dssp             HHHHHHHHHHHTTCCBCEEECCEEHHHHT
T ss_pred             HHHHHHHhhcccccceEEeccceeecCCc
Confidence            44445555677788887777766667543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.02  E-value=8.3e-06  Score=69.72  Aligned_cols=159  Identities=20%  Similarity=0.208  Sum_probs=93.0

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeC-------
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT-------   73 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~-------   73 (300)
                      |+-+.+++.||||++-||..++..|++.|.       +|++.|++  .++++....++.........+++-..       
T Consensus         1 M~L~gK~alVTGas~GIG~aia~~la~~Ga-------~V~~~~r~--~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~   71 (256)
T d1k2wa_           1 MRLDGKTALITGSARGIGRAFAEAYVREGA-------RVAIADIN--LEAARATAAEIGPAACAIALDVTDQASIDRCVA   71 (256)
T ss_dssp             CTTTTEEEEEETCSSHHHHHHHHHHHHTTE-------EEEEEESC--HHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHH
Confidence            666778899999999999999999999885       79999986  45665544444221111111111001       


Q ss_pred             ChhhhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           74 DAVEACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        74 ~~~~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                      ...+.+...|++|+.||......   .+.   ...+..|+.    ..+..++.+.+... ...+|++|.....       
T Consensus        72 ~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~-~g~Iv~isS~~~~-------  143 (256)
T d1k2wa_          72 ELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGR-GGKIINMASQAGR-------  143 (256)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGT-------
T ss_pred             HHHHHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhcc-CCccccccchhhc-------
Confidence            11223457899999999754221   222   234566654    34445555555443 3578888765431       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                        .+.|..-.|+.++---..+-+.+|.+++  +..|+
T Consensus       144 --~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIr  176 (256)
T d1k2wa_         144 --RGEALVGVYCATKAAVISLTQSAGLNLI--RHGIN  176 (256)
T ss_dssp             --SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             --cccccccchhhhhhHHHHHHHHHHHHhc--ccCeE
Confidence              1223222345555555667778888775  34454

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.97  E-value=4.8e-05  Score=60.35  Aligned_cols=96  Identities=19%  Similarity=0.199  Sum_probs=57.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||+||| +|.+|++++..|...++.     .+|+.+|.++  +.++ .+.+..-      .....+........++|+|
T Consensus         2 k~I~IIG-~G~mG~sla~~L~~~g~~-----~~I~~~D~~~--~~~~-~a~~~~~------~~~~~~~~~~~~~~~~dlI   66 (171)
T d2g5ca2           2 QNVLIVG-VGFMGGSFAKSLRRSGFK-----GKIYGYDINP--ESIS-KAVDLGI------IDEGTTSIAKVEDFSPDFV   66 (171)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHHTTCC-----SEEEEECSCH--HHHH-HHHHTTS------CSEEESCGGGGGGTCCSEE
T ss_pred             CEEEEEc-cCHHHHHHHHHHHhcCCC-----eEEEEEECCh--HHHH-HHHHhhc------chhhhhhhhhhhccccccc
Confidence            4799999 799999999999987752     2788899863  3322 1111110      1111222334455689999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      |++.  |              ...+.++.+.+..+-+++..++-+++
T Consensus        67 ila~--p--------------~~~~~~vl~~l~~~~~~~~ii~d~~s   97 (171)
T d2g5ca2          67 MLSS--P--------------VRTFREIAKKLSYILSEDATVTDQGS   97 (171)
T ss_dssp             EECS--C--------------HHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             cccC--C--------------chhhhhhhhhhhcccccccccccccc
Confidence            9874  1              12334555566666555665555554

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.93  E-value=6.5e-06  Score=69.44  Aligned_cols=161  Identities=15%  Similarity=0.098  Sum_probs=90.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC--C
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--G   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~--~   81 (300)
                      +.++|.||||+|.+|..++..|++.|.       +|.++|..++++.......++..........+  .....+.+.  .
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   71 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNW-------WVASIDVVENEEASASVIVKMTDSFTEQADQV--TAEVGKLLGDQK   71 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEESSCCTTSSEEEECCCCSCHHHHHHHH--HHHHHHHHTTCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCccccccccceeecccCcHHHHHHH--HHHHHHHhCCCC
Confidence            357999999999999999999998875       78899986533222111111100000000000  001112222  4


Q ss_pred             CcEEEEeCCCCC--CC-CCcH----HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEE
Q 022227           82 VNIAVMVGGFPR--KE-GMER----KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNIT  154 (300)
Q Consensus        82 aDvVi~~ag~~~--~~-g~~r----~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~  154 (300)
                      .|++|+.||...  .+ .+..    ...+..|+.......+.+.++-.++..+|++++-...         .+.|..-.|
T Consensus        72 iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~---------~~~~~~~~Y  142 (236)
T d1dhra_          72 VDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL---------DGTPGMIGY  142 (236)
T ss_dssp             EEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG---------SCCTTBHHH
T ss_pred             ceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHc---------CCccCCccc
Confidence            799999998522  11 1111    2345667766666666655543335677777754321         123322245


Q ss_pred             eeehhhHHHHHHHHHHHcCCCCCCeEEE
Q 022227          155 CLTRLDHNRALGQISEKLNVQVSDVKNV  182 (300)
Q Consensus       155 ~~t~ld~~R~~~~la~~l~v~~~~V~~~  182 (300)
                      +.++---..+.+.+|.+++-.+..|+..
T Consensus       143 ~asKaal~~lt~~la~El~~~~~gI~vn  170 (236)
T d1dhra_         143 GMAKGAVHQLCQSLAGKNSGMPSGAAAI  170 (236)
T ss_dssp             HHHHHHHHHHHHHHTSTTSSCCTTCEEE
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCcEEEE
Confidence            6666666778888888876545667643

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=4.2e-05  Score=64.73  Aligned_cols=158  Identities=15%  Similarity=0.167  Sum_probs=92.8

Q ss_pred             CCC--CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEe---CCh
Q 022227            1 MAK--EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT---TDA   75 (300)
Q Consensus         1 m~~--~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~---~~~   75 (300)
                      |++  +.+++.||||++-||..++..|++.|.       +|++.|++  +++++....++.... ....++.-.   ...
T Consensus         1 M~~~L~GK~~lITGas~GIG~aia~~la~~G~-------~V~~~~r~--~~~l~~~~~~~~~~~-~~~~Dv~d~~~v~~~   70 (244)
T d1pr9a_           1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGA-------RVVAVSRT--QADLDSLVRECPGIE-PVCVDLGDWEATERA   70 (244)
T ss_dssp             CCCCCTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESC--HHHHHHHHHHSTTCE-EEECCTTCHHHHHHH
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEECC--HHHHHHHHHhcCCCe-EEEEeCCCHHHHHHH
Confidence            554  668999999999999999999999885       79999986  355554433332211 000010000   012


Q ss_pred             hhhcCCCcEEEEeCCCCCCCC---CcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHC
Q 022227           76 VEACTGVNIAVMVGGFPRKEG---MERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~~g---~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                      .+.+...|++|..||......   .+..   ..+..|+.    ..+.+++.+.+... ...+|+++.-...         
T Consensus        71 ~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~-~g~Ii~isS~~~~---------  140 (244)
T d1pr9a_          71 LGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGV-PGAIVNVSSQCSQ---------  140 (244)
T ss_dssp             HTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGT---------
T ss_pred             HHHhCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCC-cceEeeccccccc---------
Confidence            334567899999998764321   2222   34555554    44555555444333 3567777754421         


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      .+.|..-.|+.++--...+-+.+|.+++  +..|+
T Consensus       141 ~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIr  173 (244)
T d1pr9a_         141 RAVTNHSVYCSTKGALDMLTKVMALELG--PHKIR  173 (244)
T ss_dssp             SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             ccccchhhhhhhHHHHHHHHHHHHHHhC--CCcEE
Confidence            1233222355555556677888888875  45565

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=4.6e-05  Score=64.40  Aligned_cols=158  Identities=13%  Similarity=0.084  Sum_probs=90.5

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeC---Chhh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT---DAVE   77 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~---~~~~   77 (300)
                      |+-+.+++.||||++-||..++..|++.|.       .|++.|+++  ++++....++..... ...++.-..   ...+
T Consensus         1 mdl~GK~alITGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~l~~~~~~~~~~~~-~~~Dv~~~~~v~~~~~   70 (242)
T d1cyda_           1 LNFSGLRALVTGAGKGIGRDTVKALHASGA-------KVVAVTRTN--SDLVSLAKECPGIEP-VCVDLGDWDATEKALG   70 (242)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHSTTCEE-EECCTTCHHHHHHHHT
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHhcCCCeE-EEEeCCCHHHHHHHHH
Confidence            666778999999999999999999999885       799999863  455443333322110 000100000   1223


Q ss_pred             hcCCCcEEEEeCCCCCCC---CCcHH---HHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCC
Q 022227           78 ACTGVNIAVMVGGFPRKE---GMERK---DVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS  147 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~---g~~r~---dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~  147 (300)
                      .+...|++|+.||.....   ..+..   ..+..|+..    .+...+.+.+... ...+|+++.....         .+
T Consensus        71 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~-~g~ii~isS~~~~---------~~  140 (242)
T d1cyda_          71 GIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGV-PGSIVNVSSMVAH---------VT  140 (242)
T ss_dssp             TCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGT---------SC
T ss_pred             HcCCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcc-cCcccccchhhcc---------cc
Confidence            355789999999975422   12222   345556544    4444555444433 3467777764421         12


Q ss_pred             CCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       148 ~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      .|..-.|+.++---..+.+.+|.+++  +..|+
T Consensus       141 ~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIr  171 (242)
T d1cyda_         141 FPNLITYSSTKGAMTMLTKAMAMELG--PHKIR  171 (242)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             CCccccccchHHHHHHHHHHHHHHhC--ccCee
Confidence            23222345555555667777888765  44555

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.85  E-value=2.5e-05  Score=66.25  Aligned_cols=155  Identities=17%  Similarity=0.151  Sum_probs=91.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeC-------Chh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT-------DAV   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~-------~~~   76 (300)
                      +.+.+.||||++-||..++..|++.|.       +|++.|+++  ++++....++.+.......+++-..       ...
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   75 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGA-------KVVFGDILD--EEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAV   75 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHH
Confidence            456888999999999999999999885       799999863  5666555555432211111110000       122


Q ss_pred             hhcCCCcEEEEeCCCCCCC---CCcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           77 EACTGVNIAVMVGGFPRKE---GMERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~---g~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                      +.+...|++|+.||.....   ..+..   +.+..|+.    .++...+.+.+..  ...+|++++....         .
T Consensus        76 ~~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~Ii~isS~~~~---------~  144 (244)
T d1nffa_          76 TAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG--RGSIINISSIEGL---------A  144 (244)
T ss_dssp             HHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------S
T ss_pred             HHhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcC--cceEEeccccccc---------c
Confidence            3345789999999875422   22322   34555644    4445556666553  3578888875531         1


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      +.|..-.|+.++--...+.+.+|.++.  +..|+
T Consensus       145 ~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIr  176 (244)
T d1nffa_         145 GTVACHGYTATKFAVRGLTKSTALELG--PSGIR  176 (244)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHhc--ccCEE
Confidence            223222355555556677777888775  34454

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.85  E-value=3.1e-05  Score=63.00  Aligned_cols=81  Identities=10%  Similarity=0.101  Sum_probs=55.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc--ccEEEeCChhhhcC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL--KGVVATTDAVEACT   80 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~--~~v~~~~~~~~a~~   80 (300)
                      .+.++|.||||+|.+|..++..|++.|.       +++++|++.  ++++.....+........  ..+....+..+++.
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   91 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGA-------EVVLCGRKL--DKAQAAADSVNKRFKVNVTAAETADDASRAEAVK   91 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhcc-------chhhcccch--HHHHHHHHHHHhccchhhhhhhcccHHHHHHHhc
Confidence            3567999999999999999999999875       799999963  555544433332211111  11111234567789


Q ss_pred             CCcEEEEeCCCC
Q 022227           81 GVNIAVMVGGFP   92 (300)
Q Consensus        81 ~aDvVi~~ag~~   92 (300)
                      ++|++|++||..
T Consensus        92 ~iDilin~Ag~g  103 (191)
T d1luaa1          92 GAHFVFTAGAIG  103 (191)
T ss_dssp             TCSEEEECCCTT
T ss_pred             CcCeeeecCccc
Confidence            999999998864

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=97.80  E-value=6.1e-05  Score=64.83  Aligned_cols=152  Identities=19%  Similarity=0.167  Sum_probs=89.2

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEe-------C
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT-------T   73 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~-------~   73 (300)
                      |+.+.+.+.||||++-||..++..|++.|.       +|++.|++  .++++....++.........+++-.       .
T Consensus         1 M~L~gK~alITGas~GIG~aia~~la~~Ga-------~V~i~~r~--~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~   71 (276)
T d1bdba_           1 MKLKGEAVLITGGASGLGRALVDRFVAEGA-------KVAVLDKS--AERLAELETDHGDNVLGIVGDVRSLEDQKQAAS   71 (276)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESC--HHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHHcCCCeeEEecccccHHHHHHHHH
Confidence            777778999999999999999999999885       79999986  3556544444332211111111000       0


Q ss_pred             ChhhhcCCCcEEEEeCCCCCCC-------CCc-H---HHHHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHH
Q 022227           74 DAVEACTGVNIAVMVGGFPRKE-------GME-R---KDVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNA  138 (300)
Q Consensus        74 ~~~~a~~~aDvVi~~ag~~~~~-------g~~-r---~dl~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~  138 (300)
                      ...+.+...|++|..||.....       .+. .   ...+..|+    ...+...+.+++..  . .+|++++....  
T Consensus        72 ~~~~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~--g-~iI~i~S~~~~--  146 (276)
T d1bdba_          72 RCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR--G-NVIFTISNAGF--  146 (276)
T ss_dssp             HHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--C-EEEEECCGGGT--
T ss_pred             HHHHHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC--C-Cceeeeechhc--
Confidence            1233456789999999864321       111 1   23355554    44556666666542  3 45555543321  


Q ss_pred             HHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       139 ~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                             .+.|..-.|+.++--...+-+.+|.+++
T Consensus       147 -------~~~~~~~~Y~asKaal~~ltr~lA~ela  174 (276)
T d1bdba_         147 -------YPNGGGPLYTAAKHAIVGLVRELAFELA  174 (276)
T ss_dssp             -------STTSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -------cCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence                   1223222355555556677888898886

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.80  E-value=9.4e-05  Score=57.57  Aligned_cols=39  Identities=13%  Similarity=0.304  Sum_probs=33.5

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      |+...+||+|||+.|.+|.+++..|.+.|+       ++..+|++.
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~-------~V~~~d~~~   43 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGY-------PISILDRED   43 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTC-------CEEEECTTC
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCC-------CcEeccccc
Confidence            455667999999789999999999998876       799999863

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=3.6e-05  Score=65.17  Aligned_cols=160  Identities=16%  Similarity=0.146  Sum_probs=92.9

Q ss_pred             CCC-CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc-ccEEEeCChhhh
Q 022227            1 MAK-EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL-KGVVATTDAVEA   78 (300)
Q Consensus         1 m~~-~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~-~~v~~~~~~~~a   78 (300)
                      |.+ +.+++.||||++.+|..++..|+..|.       +|++.|+++  ++++.............. ..-.......+.
T Consensus         1 m~~l~gK~alITGas~GIG~aia~~la~~G~-------~Vi~~~r~~--~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~   71 (245)
T d2ag5a1           1 MGRLDGKVIILTAAAQGIGQAAALAFAREGA-------KVIATDINE--SKLQELEKYPGIQTRVLDVTKKKQIDQFANE   71 (245)
T ss_dssp             CCTTTTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHGGGGGSTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHhccCCceeeeeccccccccccccc
Confidence            553 567899999999999999999999885       799999863  445432211110000000 000000112344


Q ss_pred             cCCCcEEEEeCCCCCCC---CCcHHH---HHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCC
Q 022227           79 CTGVNIAVMVGGFPRKE---GMERKD---VMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI  148 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~~---g~~r~d---l~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~  148 (300)
                      +...|++|+.||.....   ..+..+   .+..|+    ...+.+.+.+.+..  ...+|++++....       . .+.
T Consensus        72 ~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~--~g~Ii~isS~~~~-------~-~~~  141 (245)
T d2ag5a1          72 VERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK--SGNIINMSSVASS-------V-KGV  141 (245)
T ss_dssp             CSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCSBTT-------T-BCC
T ss_pred             cccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCC--Cceeeeeechhhc-------c-CCc
Confidence            56889999999986532   123322   344443    44555566666553  4578888765431       0 223


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEE
Q 022227          149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVKN  181 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~  181 (300)
                      +..-.|+.++--...+.+.+|.+++  +..|+.
T Consensus       142 ~~~~~Y~~sKaal~~l~r~lA~e~~--~~gIrv  172 (245)
T d2ag5a1         142 VNRCVYSTTKAAVIGLTKSVAADFI--QQGIRC  172 (245)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHhh--hhCcEE
Confidence            3223456666666778888888876  445653

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.77  E-value=2e-05  Score=66.15  Aligned_cols=158  Identities=11%  Similarity=0.080  Sum_probs=88.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhh--hhhhhhccCCcccEEEeCChhhh--cC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK--MELVDAAFPLLKGVVATTDAVEA--CT   80 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~--~dl~~~~~~~~~~v~~~~~~~~a--~~   80 (300)
                      ..||.||||++-+|..++..|++.|.       +|+++|+++++.......  .|..+...  ...  ......+.  ..
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~g   70 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGY-------TVLNIDLSANDQADSNILVDGNKNWTEQ--EQS--ILEQTASSLQGS   70 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-------EEEEEESSCCTTSSEEEECCTTSCHHHH--HHH--HHHHHHHHHTTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCchhcccccceeccccCchhH--HHH--HHHHHHHHhcCC
Confidence            35899999999999999999999886       799999875321111000  00000000  000  00011122  23


Q ss_pred             CCcEEEEeCCCCCC--C-CCc---H-HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcE
Q 022227           81 GVNIAVMVGGFPRK--E-GME---R-KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI  153 (300)
Q Consensus        81 ~aDvVi~~ag~~~~--~-g~~---r-~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i  153 (300)
                      .-|++|+.||....  + .++   . ...+..|+.....+.+.+..+-.++..++++|.....         .+.|..-.
T Consensus        71 ~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~---------~~~~~~~~  141 (235)
T d1ooea_          71 QVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM---------GPTPSMIG  141 (235)
T ss_dssp             CEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG---------SCCTTBHH
T ss_pred             CeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhc---------CCcccccc
Confidence            46999999986321  1 111   1 2246677766555555555543334567777654321         12332223


Q ss_pred             EeeehhhHHHHHHHHHHHcCCCCCCeEEE
Q 022227          154 TCLTRLDHNRALGQISEKLNVQVSDVKNV  182 (300)
Q Consensus       154 ~~~t~ld~~R~~~~la~~l~v~~~~V~~~  182 (300)
                      |+.++--...|.+.+|.+++-.+..|+..
T Consensus       142 Y~asKaal~~l~~~la~e~~~~~~~i~v~  170 (235)
T d1ooea_         142 YGMAKAAVHHLTSSLAAKDSGLPDNSAVL  170 (235)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSSCCTTCEEE
T ss_pred             hHHHHHHHHHHHHHHHHHhccCCCceEEE
Confidence            55666666778888888887555666533

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.77  E-value=0.0002  Score=60.18  Aligned_cols=158  Identities=18%  Similarity=0.135  Sum_probs=93.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeC-------Chh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT-------DAV   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~-------~~~   76 (300)
                      +.+++.||||++.+|..++..|+..|.       +|++.+++.  ++++....++.........+++-..       ...
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~   74 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGA-------SLVAVDREE--RLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEAL   74 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHH
Confidence            456899999999999999999999886       799999863  5554333333221111000110000       123


Q ss_pred             hhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCC
Q 022227           77 EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPA  150 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~  150 (300)
                      +.+...|++|+.||.....   ..+.   .+.+..|+.....+.+....+..+...+++.|.......          |.
T Consensus        75 ~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~----------~~  144 (241)
T d2a4ka1          75 EEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA----------FG  144 (241)
T ss_dssp             HHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH----------HH
T ss_pred             HHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccc----------cC
Confidence            3356789999988865322   1222   345677888777777777666544444555554332110          11


Q ss_pred             CcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          151 KNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       151 ~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      ...++.++--...+.+.+|++++-.--.|.
T Consensus       145 ~~~Y~~sK~al~~lt~~lA~el~~~gIrvN  174 (241)
T d2a4ka1         145 LAHYAAGKLGVVGLARTLALELARKGVRVN  174 (241)
T ss_dssp             HHHHHHCSSHHHHHHHHHHHHHTTTTCEEE
T ss_pred             ccccchhhHHHHHHHHHHHHHHhHhCCEEe
Confidence            112455566667888899999875444444

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=0.00044  Score=58.53  Aligned_cols=156  Identities=17%  Similarity=0.148  Sum_probs=92.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeC------
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATT------   73 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~------   73 (300)
                      -+.+++.||||++-||..++..|++.|.       .|++.|++  +++++....++......   ...+++-..      
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~Ga-------~V~~~~r~--~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~   79 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATAGA-------SVVVSDIN--ADAANHVVDEIQQLGGQAFACRCDITSEQELSALA   79 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTC-------EEEEEESC--HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHH
Confidence            3567899999999999999999998885       79999986  45665554455432110   001110000      


Q ss_pred             -ChhhhcCCCcEEEEeCCCCCCC--CCcHHH---HHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           74 -DAVEACTGVNIAVMVGGFPRKE--GMERKD---VMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        74 -~~~~a~~~aDvVi~~ag~~~~~--g~~r~d---l~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                       ...+.+...|++|+.||.....  ..+..+   .+..|+    ...+..++.+.+..  ...+|++++-...       
T Consensus        80 ~~~~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~g~Ii~isS~~~~-------  150 (255)
T d1fmca_          80 DFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG--GGVILTITSMAAE-------  150 (255)
T ss_dssp             HHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT-------
T ss_pred             HHHHHHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc--ccccccccccchh-------
Confidence             1123345789999999875432  223332   355554    44556667776664  3466777654321       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                        .+.|..-.|+.++--...+.+.+|.+++  +..|+
T Consensus       151 --~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIr  183 (255)
T d1fmca_         151 --NKNINMTSYASSKAAASHLVRNMAFDLG--EKNIR  183 (255)
T ss_dssp             --CCCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEE
T ss_pred             --ccccccccchhHHHHHHHHHHHHHHHhC--ccCeE
Confidence              1223222355555566677788888875  34555

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=4.1e-05  Score=64.76  Aligned_cols=155  Identities=16%  Similarity=0.163  Sum_probs=91.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEe-------CChh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT-------TDAV   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~-------~~~~   76 (300)
                      +.+.+.||||++-+|..++..|++.|.       .|++.|++  +++++..+.++.........+++-.       ....
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-------~Vv~~~r~--~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   73 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-------KVIGTATS--ENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIR   73 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESS--HHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEeCC--HHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhh
Confidence            446788999999999999999999886       79999986  3555544433322111100011000       0122


Q ss_pred             hhcCCCcEEEEeCCCCCCCC---CcHH---HHHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           77 EACTGVNIAVMVGGFPRKEG---MERK---DVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~g---~~r~---dl~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                      +.+...|++|..||......   .+..   ..+..|+    ..++...+.+.+..  ...+|++|+....       .  
T Consensus        74 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~II~isS~~~~-------~--  142 (243)
T d1q7ba_          74 AEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKR--HGRIITIGSVVGT-------M--  142 (243)
T ss_dssp             HHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHH-------H--
T ss_pred             cccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcC--CCEeeeecchhhc-------C--
Confidence            33457899999998754322   1222   3355554    45556666666653  3578888864421       1  


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      +.|..-.|+.++--...+.+.+|.+++  +..|+
T Consensus       143 ~~~~~~~Y~asKaal~~lt~~lA~ela--~~gIr  174 (243)
T d1q7ba_         143 GNGGQANYAAAKAGLIGFSKSLAREVA--SRGIT  174 (243)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhC--ccCeE
Confidence            223222456666666678888888875  44555

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.74  E-value=2.6e-05  Score=61.20  Aligned_cols=65  Identities=11%  Similarity=0.167  Sum_probs=46.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+||| +|.+|++++..|...+.       ++.++|.+  .++++.....+         .+....+..++++++|+|
T Consensus         1 MkIg~IG-~G~mG~al~~~l~~~~~-------~i~v~~r~--~~~~~~l~~~~---------g~~~~~~~~~~~~~~dvI   61 (152)
T d2ahra2           1 MKIGIIG-VGKMASAIIKGLKQTPH-------ELIISGSS--LERSKEIAEQL---------ALPYAMSHQDLIDQVDLV   61 (152)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHTTSSC-------EEEEECSS--HHHHHHHHHHH---------TCCBCSSHHHHHHTCSEE
T ss_pred             CEEEEEe-ccHHHHHHHHHHHhCCC-------eEEEEcCh--HHhHHhhcccc---------ceeeechhhhhhhcccee
Confidence            6999999 79999999999887653       78999875  34444222211         112344778889999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++.
T Consensus        62 ilav   65 (152)
T d2ahra2          62 ILGI   65 (152)
T ss_dssp             EECS
T ss_pred             eeec
Confidence            9874

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.73  E-value=0.00035  Score=58.71  Aligned_cols=157  Identities=18%  Similarity=0.124  Sum_probs=88.0

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc----ccEE-EeCCh
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL----KGVV-ATTDA   75 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~----~~v~-~~~~~   75 (300)
                      |+.+.+++.||||++-||..++..|++.|.       +|++.|+++  ++++....++........    ..+. .-...
T Consensus         1 M~L~gK~~lITGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   71 (242)
T d1ulsa_           1 MRLKDKAVLITGAAHGIGRATLELFAKEGA-------RLVACDIEE--GPLREAAEAVGAHPVVMDVADPASVERGFAEA   71 (242)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTTTCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHcCCeEEEEecCCHHHHHHHHHHH
Confidence            777888999999999999999999999885       799999863  455433222211000000    0000 00012


Q ss_pred             hhhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHC
Q 022227           76 VEACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                      .+.+...|++|+.||......   .+.   ...+..|+...    +...+.+.+..  ...+++.+. ...         
T Consensus        72 ~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~~~i~~~ss-~~~---------  139 (242)
T d1ulsa_          72 LAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN--PGSIVLTAS-RVY---------  139 (242)
T ss_dssp             HHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--CEEEEEECC-GGG---------
T ss_pred             HHhcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccc--cceeeeecc-ccc---------
Confidence            334557899999999764321   222   23455565444    44455555443  334555443 211         


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      .+.|..-.|+.++---..+-+.+|.+++  +..|+
T Consensus       140 ~~~~~~~~Y~asKaal~~ltk~lA~ela--~~gIr  172 (242)
T d1ulsa_         140 LGNLGQANYAASMAGVVGLTRTLALELG--RWGIR  172 (242)
T ss_dssp             GCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             cCCCCCcchHHHHHHHHHHHHHHHHHHh--hhCcE
Confidence            1223222355555555667777887775  44555

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.73  E-value=0.0001  Score=62.63  Aligned_cols=155  Identities=15%  Similarity=0.089  Sum_probs=91.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeC-------Chh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT-------DAV   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~-------~~~   76 (300)
                      +.+++.||||++-||..++..|++.|.       .|++.|+++  ++++....++.........+++-..       ...
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   74 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA-------RVVLADVLD--EEGAATARELGDAARYQHLDVTIEEDWQRVVAYAR   74 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHH
Confidence            457899999999999999999999885       799999863  5555444444322111101110000       122


Q ss_pred             hhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           77 EACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                      +.+...|++|..||......   .+.   ...+..|+.    ..+.+.+.+++..  ...+|++++-...         .
T Consensus        75 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~--~G~II~isS~~~~---------~  143 (254)
T d1hdca_          75 EEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG--GGSIVNISSAAGL---------M  143 (254)
T ss_dssp             HHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------S
T ss_pred             HHcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcC--CCeecccccchhc---------c
Confidence            33567899999998754221   222   234556654    4455555655553  4578888865431         1


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      +.|..-.|+.++--...+-+.+|.+++  +..|+
T Consensus       144 ~~~~~~~Y~asKaal~~lt~~lA~e~a--~~gIr  175 (254)
T d1hdca_         144 GLALTSSYGASKWGVRGLSKLAAVELG--TDRIR  175 (254)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHhC--CCceE
Confidence            223222455555556677777887765  33444

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.72  E-value=0.0002  Score=60.62  Aligned_cols=153  Identities=12%  Similarity=0.121  Sum_probs=87.8

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC----CcccEEEeC----
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----LLKGVVATT----   73 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~----~~~~v~~~~----   73 (300)
                      +.+.+.+.||||++.||..++..|++.|.       .|++.|+++  ++++....++.+....    ...+++-..    
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga-------~V~i~~r~~--~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~   72 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGC-------SVVVASRNL--EEASEAAQKLTEKYGVETMAFRCDVSNYEEVKK   72 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHH
Confidence            44667899999999999999999999885       799999863  5554444444332100    001110000    


Q ss_pred             ---ChhhhcCCCcEEEEeCCCCCCCC---CcHH---HHHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH
Q 022227           74 ---DAVEACTGVNIAVMVGGFPRKEG---MERK---DVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        74 ---~~~~a~~~aDvVi~~ag~~~~~g---~~r~---dl~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                         ...+.+...|++|+.||......   .+..   ..+..|+    ...+..++.+++..  ...+|++++-...    
T Consensus        73 ~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~Ii~i~S~~~~----  146 (251)
T d1vl8a_          73 LLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD--NPSIINIGSLTVE----  146 (251)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS--SCEEEEECCGGGT----
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccc--cccccccccchhc----
Confidence               11233457899999999754322   2322   2355554    45555666666553  3467777653210    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                         . .+.|..-.|+.++--...+.+.+|.+++
T Consensus       147 ---~-~~~~~~~~Y~asKaal~~lt~~lA~e~~  175 (251)
T d1vl8a_         147 ---E-VTMPNISAYAASKGGVASLTKALAKEWG  175 (251)
T ss_dssp             ---C-CCSSSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ---c-ccCccccchHHHHHhHHHHHHHHHHHhc
Confidence               0 1222111355555555667777787765

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.71  E-value=0.00038  Score=58.88  Aligned_cols=154  Identities=18%  Similarity=0.201  Sum_probs=89.2

Q ss_pred             cEE-EEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEe-------CC
Q 022227            6 VRV-LVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVAT-------TD   74 (300)
Q Consensus         6 ~kV-~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~-------~~   74 (300)
                      +|| .||||++-||..++..|++.|.       .|++.|++  +++++..+.++.+....   ...+++-.       ..
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga-------~V~~~~r~--~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~   71 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF-------AVAIADYN--DATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQ   71 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESC--HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHH
Confidence            365 7889999999999999999885       79999986  46666555555432110   00111000       01


Q ss_pred             hhhhcCCCcEEEEeCCCCCCC---CCcH---HHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           75 AVEACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~---g~~r---~dl~~~N~~i~----~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                      ..+.+...|++|+.||.....   ..+.   ...+..|+...    +..++.+.+.+. ...++++++....        
T Consensus        72 ~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-~g~Iv~isS~~~~--------  142 (255)
T d1gega_          72 ARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGH-GGKIINACSQAGH--------  142 (255)
T ss_dssp             HHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGT--------
T ss_pred             HHHHhCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhcc-ccccccccchhhc--------
Confidence            223356789999999875422   1232   23455665444    444555556554 4566776654421        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                       .+.|..-.|+.++--...+.+.+|.+++  +..|+
T Consensus       143 -~~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIr  175 (255)
T d1gega_         143 -VGNPELAVYSSSKFAVRGLTQTAARDLA--PLGIT  175 (255)
T ss_dssp             -SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             -ccCcccccchhCHHHHHhhHHHHHHHhh--hhCcE
Confidence             1223222345555555677778888775  44555

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.69  E-value=3.2e-05  Score=60.50  Aligned_cols=64  Identities=14%  Similarity=0.089  Sum_probs=44.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+||| .|.+|+.++..|.+.|+       ++..+|..+. .....    .....     .+  ..+..++++++|+|
T Consensus         1 MkIgiIG-~G~mG~~ia~~l~~~g~-------~v~~~~~~~~-~~~~~----~~~~~-----~~--~~~~~e~~~~~diI   60 (152)
T d1i36a2           1 LRVGFIG-FGEVAQTLASRLRSRGV-------EVVTSLEGRS-PSTIE----RARTV-----GV--TETSEEDVYSCPVV   60 (152)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHHTTC-------EEEECCTTCC-HHHHH----HHHHH-----TC--EECCHHHHHTSSEE
T ss_pred             CEEEEEc-HHHHHHHHHHHHHHCCC-------eEEEEcCchh-HHHHH----hhhcc-----cc--cccHHHHHhhcCeE
Confidence            5999999 89999999999999875       7888887542 11111    11111     11  12456889999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++-
T Consensus        61 i~~v   64 (152)
T d1i36a2          61 ISAV   64 (152)
T ss_dssp             EECS
T ss_pred             EEEe
Confidence            9873

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.67  E-value=0.00019  Score=62.60  Aligned_cols=160  Identities=13%  Similarity=0.149  Sum_probs=91.1

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCch-------hhhhhhhhhhhhhccCCcccEEEeC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-------EALNGVKMELVDAAFPLLKGVVATT   73 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~-------~~l~g~~~dl~~~~~~~~~~v~~~~   73 (300)
                      |.-+.+.+.||||++-||..++..|++.|.       .|++.|++.+.       +.++....++..........+.-..
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga-------~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~   75 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGA-------LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVE   75 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGG
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHH
Confidence            444567899999999999999999999886       79999875421       1222222222211100000000001


Q ss_pred             C-------hhhhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhh
Q 022227           74 D-------AVEACTGVNIAVMVGGFPRKEG---MER---KDVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANT  136 (300)
Q Consensus        74 ~-------~~~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~  136 (300)
                      +       ..+.+...|++|..||..+...   .+.   ...+..|+    ..++...+.+++..  ...||++++... 
T Consensus        76 ~~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~IV~isS~~~-  152 (302)
T d1gz6a_          76 AGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN--YGRIIMTASASG-  152 (302)
T ss_dssp             GHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECCHHH-
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC--CcEEEEeCChhh-
Confidence            1       1234557899999999865321   222   23455565    45566666676664  357888886443 


Q ss_pred             HHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       137 ~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                            ..  +.|..-.|+.++--...+.+.+|.++.  +..|+
T Consensus       153 ------~~--~~~~~~~Y~asKaal~~lt~~la~E~~--~~gIr  186 (302)
T d1gz6a_         153 ------IY--GNFGQANYSAAKLGLLGLANTLVIEGR--KNNIH  186 (302)
T ss_dssp             ------HH--CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEE
T ss_pred             ------cC--CCCCcHHHHHHHHHHHHHHHHHHHHHh--ccCCc
Confidence                  11  223222455566666677777888764  44454

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=97.66  E-value=0.00022  Score=60.61  Aligned_cols=156  Identities=12%  Similarity=0.094  Sum_probs=91.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc----cCCcccEEEeC------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA----FPLLKGVVATT------   73 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~----~~~~~~v~~~~------   73 (300)
                      +.+.+.||||++-||..++..|++.|.       .|++.|+++ .+.++....++....    .....+++-..      
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga-------~V~~~~r~~-~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~   74 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA-------DIVLNGFGD-AAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLV   74 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEECCSC-HHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCc-HHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence            456889999999999999999999885       799999864 334443333332211    00001111001      


Q ss_pred             -ChhhhcCCCcEEEEeCCCCCCCC---CcHH---HHHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           74 -DAVEACTGVNIAVMVGGFPRKEG---MERK---DVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        74 -~~~~a~~~aDvVi~~ag~~~~~g---~~r~---dl~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                       ...+.+-..|++|+.||......   .+..   ..+..|+    ..++...+.+++..  ...+|+++.....      
T Consensus        75 ~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Iv~isS~~~~------  146 (260)
T d1x1ta1          75 DNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG--FGRIINIASAHGL------  146 (260)
T ss_dssp             HHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT------
T ss_pred             HHHHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcC--CceEeecccccce------
Confidence             12233457899999999764321   2222   3455554    45566677777664  3578888765531      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                         .+.|..-.|+.++--...+.+.+|.+++  +..|+
T Consensus       147 ---~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIr  179 (260)
T d1x1ta1         147 ---VASANKSAYVAAKHGVVGFTKVTALETA--GQGIT  179 (260)
T ss_dssp             ---SCCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEE
T ss_pred             ---eccCCcchhhhhhhhHHHhHHHHHHHhc--hhCcE
Confidence               1223222355566566677888888876  44454

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.66  E-value=8.2e-05  Score=62.60  Aligned_cols=153  Identities=16%  Similarity=0.215  Sum_probs=89.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc-hhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA-AEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~-~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      +.+++.||||++-||..++..|++.|.       +|++.|+++. .+.+.....|+.+....  ..+  -....+.+...
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga-------~V~~~~r~~~~~~~~~~~~~Dv~~~~~v--~~~--~~~~~~~~g~i   74 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH-------KVAVTHRGSGAPKGLFGVEVDVTDSDAV--DRA--FTAVEEHQGPV   74 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSSCCCTTSEEEECCTTCHHHH--HHH--HHHHHHHHSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCcchhcCceEEEEecCCHHHH--HHH--HHHHHHhcCCc
Confidence            457899999999999999999999885       7999998642 12222334555543310  000  01234456689


Q ss_pred             cEEEEeCCCCCCC---CCcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCc
Q 022227           83 NIAVMVGGFPRKE---GMERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN  152 (300)
Q Consensus        83 DvVi~~ag~~~~~---g~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~  152 (300)
                      |++|+.||.....   ..+..   +.++.|+.    ..+..++.+.+..  ..++|+++.-....         +.|..-
T Consensus        75 DiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~g~Iv~isS~~~~~---------~~~~~~  143 (237)
T d1uzma1          75 EVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK--FGRMIFIGSVSGLW---------GIGNQA  143 (237)
T ss_dssp             SEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCCCC--------------CCH
T ss_pred             eEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccC--CCceEEEcchhhcc---------CCcccH
Confidence            9999999975422   22332   34555544    4556666776664  35788887644311         112112


Q ss_pred             EEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          153 ITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       153 i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      .|+.++--...+.+.+|.++.  +..|+
T Consensus       144 ~Y~asKaal~~lt~~lA~e~~--~~gIr  169 (237)
T d1uzma1         144 NYAASKAGVIGMARSIARELS--KANVT  169 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             HHHHHHHHHHHHHHHHHhhhh--cCCce
Confidence            344555555567777888765  34454

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.64  E-value=0.00017  Score=56.13  Aligned_cols=99  Identities=14%  Similarity=0.128  Sum_probs=59.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||+|+||+|++|+-++..|+...-+.   ..++.++.....    .+...++...     ..........+.++++|+|
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p---~~~i~~~ss~~~----~gk~~~~~~~-----~~~~~~~~~~~~~~~~Dvv   68 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFD---LIEPVFFSTSQI----GVPAPNFGKD-----AGMLHDAFDIESLKQLDAV   68 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGG---GSEEEEEESSCC----SSBCCCSSSC-----CCBCEETTCHHHHTTCSEE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCC---ceEEEEeccccc----cccccccCCc-----ceeeecccchhhhccccEE
Confidence            699999999999999998777532111   137777754322    2222111110     0111122335678999999


Q ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        86 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      |++..                -...+++++.+.+.+.   +.+|+.|++|
T Consensus        69 F~alp----------------~~~s~~~~~~l~~~g~---~~~VIDlSsd   99 (147)
T d1mb4a1          69 ITCQG----------------GSYTEKVYPALRQAGW---KGYWIDAAST   99 (147)
T ss_dssp             EECSC----------------HHHHHHHHHHHHHTTC---CSEEEESSST
T ss_pred             EEecC----------------chHHHHHhHHHHHcCC---ceEEEeCCcc
Confidence            99852                1334577777777754   2466777776

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.63  E-value=0.00013  Score=59.18  Aligned_cols=77  Identities=16%  Similarity=0.212  Sum_probs=49.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhh--------hhhhhccCCcccEEEeCChhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM--------ELVDAAFPLLKGVVATTDAVE   77 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~--------dl~~~~~~~~~~v~~~~~~~~   77 (300)
                      |||+|+| .|+||..+|..+. .|.       +++.+|+++  ++++....        ++.+.......+++.+++...
T Consensus         1 MkI~ViG-lG~vGl~~a~~~a-~g~-------~V~g~Din~--~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~   69 (196)
T d1dlja2           1 MKIAVAG-SGYVGLSLGVLLS-LQN-------EVTIVDILP--SKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKA   69 (196)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHT-TTS-------EEEEECSCH--HHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHH
T ss_pred             CEEEEEC-CChhHHHHHHHHH-CCC-------cEEEEECCH--HHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhh
Confidence            6999999 8999999986554 453       799999974  33332111        111111011235566677888


Q ss_pred             hcCCCcEEEEeCCCCC
Q 022227           78 ACTGVNIAVMVGGFPR   93 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~   93 (300)
                      +.+++|+++++-..|.
T Consensus        70 ~~~~~~ii~v~vpt~~   85 (196)
T d1dlja2          70 AYKEAELVIIATPTNY   85 (196)
T ss_dssp             HHHHCSEEEECCCCCE
T ss_pred             hhhccccccccCCccc
Confidence            8999999988765543

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.62  E-value=0.00031  Score=55.25  Aligned_cols=64  Identities=20%  Similarity=0.394  Sum_probs=47.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      +||++|| .|.+|+.++..|++.|+       ++..+|+++  ++.+    ++....      .....+..++++++|+|
T Consensus         2 ~kIg~IG-lG~MG~~iA~~L~~~g~-------~v~~~d~~~--~~~~----~~~~~~------~~~~~~~~e~~~~~dii   61 (162)
T d3cuma2           2 KQIAFIG-LGHMGAPMATNLLKAGY-------LLNVFDLVQ--SAVD----GLVAAG------ASAARSARDAVQGADVV   61 (162)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSSH--HHHH----HHHHTT------CEECSSHHHHHTSCSEE
T ss_pred             CEEEEEE-EHHHHHHHHHHHHHCCC-------eEEEEECch--hhhh----hhhhhh------ccccchhhhhccccCee
Confidence            6899999 89999999999999875       799999863  3332    222211      12334678999999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      +.+-
T Consensus        62 i~~v   65 (162)
T d3cuma2          62 ISML   65 (162)
T ss_dssp             EECC
T ss_pred             eecc
Confidence            8874

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.61  E-value=0.00024  Score=59.36  Aligned_cols=145  Identities=15%  Similarity=0.155  Sum_probs=86.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhh-----hhhhhhccCCcccEEEeCChhhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK-----MELVDAAFPLLKGVVATTDAVEA   78 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~-----~dl~~~~~~~~~~v~~~~~~~~a   78 (300)
                      +.+++.||||++-||..++..|++.|.       +|++.|+++  +.++...     .|+.+.          .....+.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga-------~V~~~~r~~--~~l~~~~~~~~~~Dv~~~----------~~~~~~~   63 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA-------EVTICARNE--ELLKRSGHRYVVCDLRKD----------LDLLFEK   63 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHTCSEEEECCTTTC----------HHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHhcCCcEEEcchHHH----------HHHHHHH
Confidence            456899999999999999999999885       799999863  4443211     122110          0124456


Q ss_pred             cCCCcEEEEeCCCCCCCC---CcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCC
Q 022227           79 CTGVNIAVMVGGFPRKEG---MERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI  148 (300)
Q Consensus        79 ~~~aDvVi~~ag~~~~~g---~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~  148 (300)
                      +...|++|+.||.+....   .+..   ..+..|+.    ..+.+.+.+++..  ...+|++++....         .+.
T Consensus        64 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~--~G~ii~i~S~~~~---------~~~  132 (234)
T d1o5ia_          64 VKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG--WGRIVAITSFSVI---------SPI  132 (234)
T ss_dssp             SCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------SCC
T ss_pred             hCCCcEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccc--ccccccccccccc---------ccc
Confidence            778999999999764321   2322   23445544    5566666666653  3467777654321         122


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      |..-.++.++---..+-+.+|.+++  +..|+
T Consensus       133 ~~~~~Y~asKaal~~ltk~lA~ela--~~gIr  162 (234)
T d1o5ia_         133 ENLYTSNSARMALTGFLKTLSFEVA--PYGIT  162 (234)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             cccccchhHHHHHHHHHHHHHHHhc--ccCeE
Confidence            2112334444444566777787775  34454

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=97.60  E-value=2e-05  Score=66.95  Aligned_cols=82  Identities=18%  Similarity=0.100  Sum_probs=48.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC----cccEEEeCChhhhc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL----LKGVVATTDAVEAC   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~----~~~v~~~~~~~~a~   79 (300)
                      +++||+||||+|++|++++..|++.|.       +|+.++++............+.......    ..++.......+++
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~-------~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   74 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGH-------PTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAV   74 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-------CEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-------eEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhh
Confidence            357999999999999999999998874       6888887542211111111111111000    01111111345678


Q ss_pred             CCCcEEEEeCCCC
Q 022227           80 TGVNIAVMVGGFP   92 (300)
Q Consensus        80 ~~aDvVi~~ag~~   92 (300)
                      +++|.|++.++..
T Consensus        75 ~~~~~vi~~~~~~   87 (307)
T d1qyca_          75 KNVDVVISTVGSL   87 (307)
T ss_dssp             HTCSEEEECCCGG
T ss_pred             hhceeeeeccccc
Confidence            8999999987543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00011  Score=62.42  Aligned_cols=153  Identities=14%  Similarity=0.146  Sum_probs=89.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEe-------CChh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT-------TDAV   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~-------~~~~   76 (300)
                      +.+.+.||||++-||..++..|++.|.       +|++.|++  +++++....++.+..+ ...+++-.       ....
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga-------~V~i~~r~--~~~~~~~~~~~~~~~~-~~~Dvs~~~~v~~~~~~~~   74 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-------RVVICDKD--ESGGRALEQELPGAVF-ILCDVTQEDDVKTLVSETI   74 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESC--HHHHHHHHHHCTTEEE-EECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHhcCCCeE-EEccCCCHHHHHHHHHHHH
Confidence            456899999999999999999999885       79999986  3555544433332111 00000000       0123


Q ss_pred             hhcCCCcEEEEeCCCCCCCC----CcHH---HHHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHC
Q 022227           77 EACTGVNIAVMVGGFPRKEG----MERK---DVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~g----~~r~---dl~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                      +.+...|++|+.||.....+    .+..   ..+..|+    ..++...+.+++.  + ..+|++++....       . 
T Consensus        75 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~-G~Ii~isS~~~~-------~-  143 (250)
T d1ydea1          75 RRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--Q-GNVINISSLVGA-------I-  143 (250)
T ss_dssp             HHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--T-CEEEEECCHHHH-------H-
T ss_pred             HhcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC--C-CCCccccccccc-------c-
Confidence            34557899999998643221    2322   3345554    4556666666654  2 367887765431       1 


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                       +.|..-.|+.++--...+.+.+|.+++  +..|+
T Consensus       144 -~~~~~~~Y~asKaal~~lt~~lA~e~a--~~gIr  175 (250)
T d1ydea1         144 -GQAQAVPYVATKGAVTAMTKALALDES--PYGVR  175 (250)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred             -cccCcchhHHHHhhHHHHHHHHHHHhc--ccCeE
Confidence             223222455565556677778888875  34444

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.59  E-value=7.9e-05  Score=58.20  Aligned_cols=65  Identities=14%  Similarity=0.181  Sum_probs=45.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      |||++|| +|.+|++++..|+..+.      .++.++|+++  ++++....++         .+...++. ++++++|+|
T Consensus         1 MkI~fIG-~G~MG~ai~~~l~~~~~------~~i~v~~r~~--~~~~~l~~~~---------~~~~~~~~-~~v~~~Div   61 (152)
T d1yqga2           1 MNVYFLG-GGNMAAAVAGGLVKQGG------YRIYIANRGA--EKRERLEKEL---------GVETSATL-PELHSDDVL   61 (152)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHCS------CEEEEECSSH--HHHHHHHHHT---------CCEEESSC-CCCCTTSEE
T ss_pred             CEEEEEc-CcHHHHHHHHHHHHCCC------CcEEEEeCCh--hHHHHhhhhc---------cccccccc-ccccccceE
Confidence            5999999 79999999999887652      1789999863  4443222211         12334443 568999999


Q ss_pred             EEeC
Q 022227           86 VMVG   89 (300)
Q Consensus        86 i~~a   89 (300)
                      |++-
T Consensus        62 ~lav   65 (152)
T d1yqga2          62 ILAV   65 (152)
T ss_dssp             EECS
T ss_pred             EEec
Confidence            9873

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.57  E-value=0.00049  Score=58.38  Aligned_cols=153  Identities=16%  Similarity=0.191  Sum_probs=88.5

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC---cccEEEeCC----
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTD----   74 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~---~~~v~~~~~----   74 (300)
                      +.+.+++.||||++.||..++..|++.|.       .|++.|+++  ++++....++.+.....   ..+++-..+    
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~-------~V~i~~r~~--~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~   73 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGA-------RVYTCSRNE--KELDECLEIWREKGLNVEGSVCDLLSRTERDKL   73 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCCceEEEeecCCHHHHHHH
Confidence            34567899999999999999999999886       799999863  55554333333221110   001100001    


Q ss_pred             ---hhhhcC-CCcEEEEeCCCCCCC---CCcHH---HHHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH
Q 022227           75 ---AVEACT-GVNIAVMVGGFPRKE---GMERK---DVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        75 ---~~~a~~-~aDvVi~~ag~~~~~---g~~r~---dl~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                         ..+.+. ..|++|..||.....   ..+..   ..+..|+    ..++.+.+.+.+..  ...+|+++.....    
T Consensus        74 ~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~--~g~ii~isS~~~~----  147 (258)
T d1ae1a_          74 MQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ--NGNVIFLSSIAGF----  147 (258)
T ss_dssp             HHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--SEEEEEECCGGGT----
T ss_pred             HHHHHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccc--ccccccccccccc----
Confidence               112232 378999998875432   12222   2344443    44555566666654  3467777765541    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCC
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNV  174 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v  174 (300)
                           .+.|..-.++.++--...+.+.+|++++-
T Consensus       148 -----~~~~~~~~Y~~sK~al~~lt~~lA~el~~  176 (258)
T d1ae1a_         148 -----SALPSVSLYSASKGAINQMTKSLACEWAK  176 (258)
T ss_dssp             -----SCCTTCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             -----cccccchhHHHHHHHHHHHHHHHHHhcCc
Confidence                 22332223555555566778888888874

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.57  E-value=0.0013  Score=55.72  Aligned_cols=157  Identities=11%  Similarity=0.098  Sum_probs=90.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEeC-------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATT-------   73 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~-------   73 (300)
                      +.+.+.||||++-||..++..|++.|.       .|++.|++. ++.++....++.....   ....+++-..       
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~-------~Vv~~~r~~-~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~   77 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKA-------KVVVNYRSK-EDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQ   77 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCc-HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence            457889999999999999999999885       799999863 3444444334432210   0000110000       


Q ss_pred             ChhhhcCCCcEEEEeCCCCCCCC---CcHH---HHHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           74 DAVEACTGVNIAVMVGGFPRKEG---MERK---DVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        74 ~~~~a~~~aDvVi~~ag~~~~~g---~~r~---dl~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                      ...+.+...|++|+.||......   .+..   ..+..|+    ...+..++.+.+... ...++++|.....       
T Consensus        78 ~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-g~~Iv~isS~~~~-------  149 (261)
T d1geea_          78 SAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDI-KGTVINMSSVHEK-------  149 (261)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-CCEEEEECCGGGT-------
T ss_pred             HHHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccc-cccccccccchhc-------
Confidence            11223457899999998764221   2332   3355564    445666677766543 3356667754431       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                        .+.|..-.|+.++---..+.+.+|.+++  +..|+
T Consensus       150 --~~~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIr  182 (261)
T d1geea_         150 --IPWPLFVHYAASKGGMKLMTETLALEYA--PKGIR  182 (261)
T ss_dssp             --SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred             --ccCccccccccCCccchhhHHHHHHHhh--hhCcE
Confidence              1233222355555556677788888775  34454

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.57  E-value=0.00023  Score=60.11  Aligned_cols=151  Identities=17%  Similarity=0.150  Sum_probs=88.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh--------hhhhhhhhccCCcccEEEeCCh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG--------VKMELVDAAFPLLKGVVATTDA   75 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g--------~~~dl~~~~~~~~~~v~~~~~~   75 (300)
                      +.+.+.||||++-||..++..|++.|.       .|++.|++++  .++-        ...|+.+...  ..++  ....
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~-------~V~~~~~~~~--~~~~~~~~~~~~~~~Dv~~~~~--v~~~--~~~~   70 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGA-------LVALCDLRPE--GKEVAEAIGGAFFQVDLEDERE--RVRF--VEEA   70 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSTT--HHHHHHHHTCEEEECCTTCHHH--HHHH--HHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCHH--HHHHHHHcCCeEEEEeCCCHHH--HHHH--HHHH
Confidence            346899999999999999999999885       7999998742  2221        0112211110  0000  0112


Q ss_pred             hhhcCCCcEEEEeCCCCCCC---CCcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHC
Q 022227           76 VEACTGVNIAVMVGGFPRKE---GMERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~~---g~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                      .+.+...|++|+.||.....   ..+..   ..+..|+.    ..+...+.+++..  ...+|+++.....         
T Consensus        71 ~~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~Ii~isS~~~~---------  139 (248)
T d2d1ya1          71 AYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG--GGAIVNVASVQGL---------  139 (248)
T ss_dssp             HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT--CEEEEEECCGGGT---------
T ss_pred             HHhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccc--ccccccccccccc---------
Confidence            34456789999999875421   22322   24555644    4555566665553  3578888765431         


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      .+.|..-.|+.++--...+-+.+|++++  +..|+
T Consensus       140 ~~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIr  172 (248)
T d2d1ya1         140 FAEQENAAYNASKGGLVNLTRSLALDLA--PLRIR  172 (248)
T ss_dssp             SBCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhh--hhCcE
Confidence            1223222355555556677788888876  44555

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.55  E-value=0.00037  Score=58.87  Aligned_cols=158  Identities=8%  Similarity=0.036  Sum_probs=89.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhc--cCCcccEEEeC-------C
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--FPLLKGVVATT-------D   74 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~--~~~~~~v~~~~-------~   74 (300)
                      +.+.+.||||++-||..++..|++.|.       .|++.|++  .++++....++....  .....+++-..       .
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga-------~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   75 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGA-------KVMITGRH--SDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDA   75 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESC--HHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHH
Confidence            456888999999999999999999885       79999986  355554433332111  00000100000       1


Q ss_pred             hhhhcCCCcEEEEeCCCCCCC---CCcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           75 AVEACTGVNIAVMVGGFPRKE---GMERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~---g~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                      ..+.+...|++|..||.....   ..+..   +.+..|+.    ..+..++.+.+... +..+|++++....        
T Consensus        76 ~~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~-gg~Ii~isS~~~~--------  146 (251)
T d1zk4a1          76 TEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGL-GASIINMSSIEGF--------  146 (251)
T ss_dssp             HHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSS-CEEEEEECCGGGT--------
T ss_pred             HHHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCC-CCceEeeecccee--------
Confidence            223355789999999875422   22333   34555654    45555666666543 4567777764431        


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                       .+.|..-.|+.++--...+.+.+|.++...+..|+
T Consensus       147 -~~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIr  181 (251)
T d1zk4a1         147 -VGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVR  181 (251)
T ss_dssp             -SCCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred             -ccCCCchhHHHHHHHHhcchHHHHHHHhcCCCcEE
Confidence             12232223455554455566677766444455565

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.54  E-value=0.00028  Score=59.55  Aligned_cols=156  Identities=15%  Similarity=0.124  Sum_probs=87.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeC-------Chh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT-------DAV   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~-------~~~   76 (300)
                      +.+.+.||||++-||..++..|++.|.       .|++.|+++. +.++....++.........+++-..       ...
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-------~V~~~~~~~~-~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~   75 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGA-------DIAIADLVPA-PEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVI   75 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCC-HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCch-HHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHH
Confidence            456889999999999999999999885       7999998753 2222111111100000001111000       122


Q ss_pred             hhcCCCcEEEEeCCCCCCCC---CcHH---HHHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           77 EACTGVNIAVMVGGFPRKEG---MERK---DVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~g---~~r~---dl~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                      +.+...|++|..||......   .+..   ..+..|+    -..+.+.+.+++..  ...+|++|+....         .
T Consensus        76 ~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~Iv~isS~~~~---------~  144 (247)
T d2ew8a1          76 STFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG--WGRIINLTSTTYW---------L  144 (247)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGG---------S
T ss_pred             HHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC--CCCccccccchhc---------c
Confidence            33557899999999754221   2222   3355554    45556666666664  3568888765431         1


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      +.|..-.|+.++---..+-+.+|.+++  +..|+
T Consensus       145 ~~~~~~~Y~asKaal~~ltk~lA~ela--~~gIr  176 (247)
T d2ew8a1         145 KIEAYTHYISTKAANIGFTRALASDLG--KDGIT  176 (247)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             cCcccccchhhhccHHHHHHHHHHHhc--ccCeE
Confidence            223222355555555567777887774  44454

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.53  E-value=0.00011  Score=62.37  Aligned_cols=156  Identities=13%  Similarity=0.084  Sum_probs=89.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeC-------Chh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT-------DAV   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~-------~~~   76 (300)
                      +.+++.||||++-||..++..|++.|.       .|++.|++  +++++....++.........+++-..       ...
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga-------~V~~~~~~--~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~   75 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGA-------KVAFSDIN--EAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQ   75 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEECSC--HHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHH
Confidence            456889999999999999999999885       79999986  35555444444322211111110000       122


Q ss_pred             hhcCCCcEEEEeCCCCCCC---CCcHH---HHHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           77 EACTGVNIAVMVGGFPRKE---GMERK---DVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~---g~~r~---dl~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                      +.+...|++|..||.....   ..+..   ..+..|+    -..+...+.+++.   ...+|++++....         .
T Consensus        76 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~---~G~Iv~isS~~~~---------~  143 (253)
T d1hxha_          76 RRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET---GGSIINMASVSSW---------L  143 (253)
T ss_dssp             HHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT---CEEEEEECCGGGT---------S
T ss_pred             HHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc---CCceecccchhhh---------c
Confidence            3355789999999975422   22322   3455564    4455566666543   3578888765431         1


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      +.|..-.|+.++--...+-+.+|.+++-....|+
T Consensus       144 ~~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~Ir  177 (253)
T d1hxha_         144 PIEQYAGYSASKAAVSALTRAAALSCRKQGYAIR  177 (253)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             CccccccccchhHHHHHHHHHHHHHHhhcCCCEE
Confidence            2232223455554455666667766643323344

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.52  E-value=0.00053  Score=58.15  Aligned_cols=152  Identities=16%  Similarity=0.126  Sum_probs=83.6

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeC-----
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATT-----   73 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~-----   73 (300)
                      +.+.+++.||||++-||..++..|+..|.       .|++.|++  +++++....++......   ...+++-..     
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga-------~V~~~~r~--~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~   75 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGA-------VIHTCARN--EYELNECLSKWQKKGFQVTGSVCDASLRPEREKL   75 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESC--HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHH
Confidence            34567899999999999999999999885       79999986  35565444444332110   000110000     


Q ss_pred             --ChhhhcC-CCcEEEEeCCCCCCC---CCcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHH
Q 022227           74 --DAVEACT-GVNIAVMVGGFPRKE---GMERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        74 --~~~~a~~-~aDvVi~~ag~~~~~---g~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                        ...+.+. ..|++|..||.....   ..+..   ..+..|+.    .++...+.+++..  ...+|+++......   
T Consensus        76 ~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Iv~isS~~~~~---  150 (259)
T d1xq1a_          76 MQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG--CGNIIFMSSIAGVV---  150 (259)
T ss_dssp             HHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SCEEEEEC---------
T ss_pred             HHHHHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc--cccccccccccccc---
Confidence              1122233 379999999875421   22332   34555554    4455556666554  34677777544211   


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                            +.|..-.|+.++--...+.+.+|.+++
T Consensus       151 ------~~~~~~~Y~asKaal~~lt~~lA~e~~  177 (259)
T d1xq1a_         151 ------SASVGSIYSATKGALNQLARNLACEWA  177 (259)
T ss_dssp             ----------CCHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ------cccccccccccccchhhhhHHHHHHhc
Confidence                  122222355555555667777888775

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.52  E-value=0.00065  Score=57.57  Aligned_cols=155  Identities=17%  Similarity=0.205  Sum_probs=91.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeC-------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATT-------   73 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~-------   73 (300)
                      +.+.+.||||++-||..++..|+..|.       .|++.|++  +++++....++.+....   ...+++-..       
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-------~V~~~~r~--~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~   74 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT-------AIALLDMN--REALEKAEASVREKGVEARSYVCDVTSEEAVIGTVD   74 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESC--HHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence            456889999999999999999999885       79999986  45665554445432110   000110000       


Q ss_pred             ChhhhcCCCcEEEEeCCCCCC--C--CCcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           74 DAVEACTGVNIAVMVGGFPRK--E--GMERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        74 ~~~~a~~~aDvVi~~ag~~~~--~--g~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                      ...+.+...|++|+.||....  +  ..+..   ..+..|+.    .++...+.+.+..  ...+|++++....      
T Consensus        75 ~~~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~--~G~II~isS~~~~------  146 (260)
T d1zema1          75 SVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN--YGRIVNTASMAGV------  146 (260)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHH------
T ss_pred             HHHHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhc--CCCCCeeechhhc------
Confidence            112334578999999986532  2  12322   33455544    4555556665543  4578888764421      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                         .+.|..-.|+.++--...+.+.+|.+++  +..|+
T Consensus       147 ---~~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIr  179 (260)
T d1zema1         147 ---KGPPNMAAYGTSKGAIIALTETAALDLA--PYNIR  179 (260)
T ss_dssp             ---SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             ---cCCcchHHHHHHHHHHHHHHHHHHHHhh--hhCCE
Confidence               1233222456666666677888888875  44555

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.51  E-value=0.00093  Score=56.82  Aligned_cols=155  Identities=14%  Similarity=0.079  Sum_probs=88.0

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC---cccEEEe-------
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVAT-------   72 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~---~~~v~~~-------   72 (300)
                      .+.+++.||||++-||..++..|+..|.       +|++.|.+. .+.++....++.......   ..++.-.       
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga-------~Vvi~~~~~-~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~   87 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGC-------KVIVNYANS-TESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMF   87 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEeCCc-hHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHH
Confidence            3457899999999999999999999885       788998864 344443333333211000   0000000       


Q ss_pred             CChhhhcCCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           73 TDAVEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        73 ~~~~~a~~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                      ....+.+...|++|+.+|......   .+   -.+.+..|+.....+.+.+.++-.+...++++++....        ..
T Consensus        88 ~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~--------~~  159 (272)
T d1g0oa_          88 EEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQ--------AK  159 (272)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGT--------CS
T ss_pred             HHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccccc--------cc
Confidence            012334567899999988754321   22   23445667666666666655544334456666654321        01


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      ..+..-.++.++--...+.+.+|.+++
T Consensus       160 ~~~~~~~Y~asKaal~~ltk~lA~e~~  186 (272)
T d1g0oa_         160 AVPKHAVYSGSKGAIETFARCMAIDMA  186 (272)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHhc
Confidence            122112345555555567778888876

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.51  E-value=0.00081  Score=56.96  Aligned_cols=157  Identities=15%  Similarity=0.165  Sum_probs=91.0

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCC----
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTD----   74 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~----   74 (300)
                      +.+.+.+.||||++-||..++..|++.|.       .|++.|++  +++++....++......   ...+++-..+    
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga-------~V~~~~r~--~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~   75 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGA-------SVYTCSRN--QKELNDCLTQWRSKGFKVEASVCDLSSRSERQEL   75 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESC--HHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHH
Confidence            44567899999999999999999999885       79999986  45665444444332110   0001100000    


Q ss_pred             ---hhhhcC-CCcEEEEeCCCCCCCC---CcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHH
Q 022227           75 ---AVEACT-GVNIAVMVGGFPRKEG---MERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        75 ---~~~a~~-~aDvVi~~ag~~~~~g---~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                         ..+.+. ..|++|..||......   .+..   ..+..|+.    ..+...+.+.+..  ...+|++++-...    
T Consensus        76 ~~~~~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~Ii~isS~~~~----  149 (259)
T d2ae2a_          76 MNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASE--RGNVVFISSVSGA----  149 (259)
T ss_dssp             HHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTS--SEEEEEECCGGGT----
T ss_pred             HHHHHHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhc--ccccccccccccc----
Confidence               112233 4799999999754322   2222   34566654    3455555555543  3567887764431    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                           .+.|..-.|+.++--...+-+.+|.+++  +..|+
T Consensus       150 -----~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIr  182 (259)
T d2ae2a_         150 -----LAVPYEAVYGATKGAMDQLTRCLAFEWA--KDNIR  182 (259)
T ss_dssp             -----SCCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEE
T ss_pred             -----cccccccchHHHHHHHHHHHHHHHHHhC--cCceE
Confidence                 1223222345555555667788888875  44555

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.50  E-value=0.0022  Score=54.15  Aligned_cols=155  Identities=14%  Similarity=0.132  Sum_probs=88.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-----CcccEEEeC-----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-----LLKGVVATT-----   73 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-----~~~~v~~~~-----   73 (300)
                      +.+.+.||||++-||..++..|++.|.       .|++.|+++  ++++....++......     ...+++-..     
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-------~V~i~~r~~--~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~   73 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-------KLSLVDVSS--EGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAY   73 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHH
Confidence            346889999999999999999999885       799999863  5555444444322110     000110000     


Q ss_pred             --ChhhhcCCCcEEEEeCCCCC--CC--CCcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHH
Q 022227           74 --DAVEACTGVNIAVMVGGFPR--KE--GMERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        74 --~~~~a~~~aDvVi~~ag~~~--~~--g~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                        ...+.+...|++|..||...  .+  ..+..   ..+..|+.    ..+...+.+++..  ...+|++++....    
T Consensus        74 ~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Ii~isS~~~~----  147 (258)
T d1iy8a_          74 VTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG--SGMVVNTASVGGI----  147 (258)
T ss_dssp             HHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGT----
T ss_pred             HHHHHHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhc--CCCCcccccHhhc----
Confidence              11233457899999999642  22  22332   34555644    4445555555554  3467887764431    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                           .+.|..-.|+.++--...+-+.+|.+++  +.+|+
T Consensus       148 -----~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIr  180 (258)
T d1iy8a_         148 -----RGIGNQSGYAAAKHGVVGLTRNSAVEYG--RYGIR  180 (258)
T ss_dssp             -----SBCSSBHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred             -----cCCCCchHHHHHHHHHHHHHHHHHHHhC--ccCce
Confidence                 1223222345555555667777888775  44454

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.001  Score=55.95  Aligned_cols=121  Identities=20%  Similarity=0.162  Sum_probs=74.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCC------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTD------   74 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~------   74 (300)
                      ..+.+.||||++-||..++..|++.|.       .|++.|++  +++++..+.++......   ...+++-..+      
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~-------~V~l~~r~--~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~   76 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS-------KLVLWDIN--KHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAK   76 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESC--HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHH
Confidence            456788999999999999999999885       79999996  46676555555432110   0001100001      


Q ss_pred             -hhhhcCCCcEEEEeCCCCCCCCC--c----HHHHHHhh----HHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           75 -AVEACTGVNIAVMVGGFPRKEGM--E----RKDVMSKN----VSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        75 -~~~a~~~aDvVi~~ag~~~~~g~--~----r~dl~~~N----~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                       ..+.+...|++|+.||.......  .    -.+.+..|    .-.++.+.+.+.+..  ..++|++++...
T Consensus        77 ~i~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~--~G~Iv~isS~~~  146 (244)
T d1yb1a_          77 KVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN--HGHIVTVASAAG  146 (244)
T ss_dssp             HHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCCC-
T ss_pred             HHHHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcC--CceEEEeecchh
Confidence             12345578999999988643221  1    12344445    345566677776654  357787776553

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.50  E-value=0.00062  Score=57.41  Aligned_cols=155  Identities=16%  Similarity=0.202  Sum_probs=91.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeC-------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATT-------   73 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~-------   73 (300)
                      +.+.+.||||++-||..++..|++.|.       .|++.|++  +++++..+.++......   ...+++-..       
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga-------~V~~~~r~--~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~   79 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVS-------HVICISRT--QKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVIN   79 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-------EEEEEESS--HHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEECC--HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence            445777999999999999999998875       79999986  45666555555432110   001111000       


Q ss_pred             ChhhhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHH
Q 022227           74 DAVEACTGVNIAVMVGGFPRKEG---MER---KDVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNALILKE  143 (300)
Q Consensus        74 ~~~~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~  143 (300)
                      ...+.+...|++|..||......   .+.   ...+..|+    ...+..++.+.+..  ...+|++|+....       
T Consensus        80 ~~~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~IVnisS~~~~-------  150 (251)
T d2c07a1          80 KILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR--YGRIINISSIVGL-------  150 (251)
T ss_dssp             HHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT--CEEEEEECCTHHH-------
T ss_pred             HHHHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCC--CeEEEEECCHHhc-------
Confidence            11233467899999998754322   222   23345554    44456666666654  3578888865431       


Q ss_pred             HCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       144 ~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      .  +.|..-.|+.++---..+-+.+|.+++  +..|+
T Consensus       151 ~--~~~~~~~Y~asKaal~~ltr~lA~el~--~~gIr  183 (251)
T d2c07a1         151 T--GNVGQANYSSSKAGVIGFTKSLAKELA--SRNIT  183 (251)
T ss_dssp             H--CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             C--CCCCCHHHHHHHHHHHHHHHHHHHHhh--hhCeE
Confidence            1  123222355566556677788888775  44555

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.49  E-value=0.0016  Score=55.45  Aligned_cols=150  Identities=12%  Similarity=0.135  Sum_probs=85.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEE-EeC---------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVV-ATT---------   73 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~-~~~---------   73 (300)
                      +.+.+.||||++-||..++..|++.|.       .|++.|++  +++++....++....... .++. +..         
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-------~V~l~~r~--~~~l~~~~~~l~~~~~~~-~~~~~~~~Dvs~~~~v~   73 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA-------NVTITGRS--SERLEETRQIILKSGVSE-KQVNSVVADVTTEDGQD   73 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESC--HHHHHHHHHHHHTTTCCG-GGEEEEECCTTSHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHHHHhcCCCC-CceEEEEccCCCHHHHH
Confidence            346889999999999999999999885       79999986  456665555554322110 0110 111         


Q ss_pred             ----ChhhhcCCCcEEEEeCCCCCCCC-------CcH---HHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           74 ----DAVEACTGVNIAVMVGGFPRKEG-------MER---KDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        74 ----~~~~a~~~aDvVi~~ag~~~~~g-------~~r---~dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                          ...+.+...|++|+.||......       ++.   ...+..|+.    .++...+.+++.  +.. +|++++...
T Consensus        74 ~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~--~g~-iI~~~Ss~a  150 (272)
T d1xkqa_          74 QIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS--KGE-IVNVSSIVA  150 (272)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCE-EEEECCGGG
T ss_pred             HHHHHHHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc--CCc-cccccchhc
Confidence                12233457899999998754211       121   223455654    445555666554  233 455554322


Q ss_pred             hHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCC
Q 022227          136 TNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNV  174 (300)
Q Consensus       136 ~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v  174 (300)
                      .        ..+.|..-.|+.++--...+-+.+|.+++-
T Consensus       151 ~--------~~~~~~~~~Y~asKaal~~ltk~lA~el~~  181 (272)
T d1xkqa_         151 G--------PQAQPDFLYYAIAKAALDQYTRSTAIDLAK  181 (272)
T ss_dssp             S--------SSCCCSSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             c--------ccCCCCcchhhhHHHHHHHHHHHHHHHhcc
Confidence            0        012332223555555566777778877753

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.45  E-value=0.0014  Score=55.85  Aligned_cols=149  Identities=14%  Similarity=0.151  Sum_probs=83.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccE-EEeCC--------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGV-VATTD--------   74 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v-~~~~~--------   74 (300)
                      +.+++.||||++-||..++..|++.|.       .|++.|++  +++++..+.++.....+. .++ .+..|        
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-------~V~~~~r~--~~~l~~~~~~i~~~~~~~-~~~~~~~~Dv~~~~~v~   72 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-------QVTITGRN--EDRLEETKQQILKAGVPA-EKINAVVADVTEASGQD   72 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESC--HHHHHHHHHHHHHTTCCG-GGEEEEECCTTSHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHHHHHcCCCC-cceEEEEeeCCCHHHHH
Confidence            356899999999999999999999885       79999986  456665555554322110 011 01111        


Q ss_pred             -----hhhhcCCCcEEEEeCCCCCCCC-----CcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhH
Q 022227           75 -----AVEACTGVNIAVMVGGFPRKEG-----MERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTN  137 (300)
Q Consensus        75 -----~~~a~~~aDvVi~~ag~~~~~g-----~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~  137 (300)
                           ..+.+...|++|..||.....+     ++..   ..+..|+.    ..+...+.+.+..  ...+++.|.-... 
T Consensus        73 ~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~g~ii~~ss~~~~-  149 (274)
T d1xhla_          73 DIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK--GEIVNVSSIVAGP-  149 (274)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECCGGGSS-
T ss_pred             HHHHHHHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccc--cccccchhhhhcc-
Confidence                 1223446899999998643221     1222   23455544    4555566665543  3445544421110 


Q ss_pred             HHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          138 ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       138 ~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                              .+.|..-.|+.++---..+-+.+|.+++
T Consensus       150 --------~~~~~~~~Y~asKaal~~ltk~lA~ela  177 (274)
T d1xhla_         150 --------QAHSGYPYYACAKAALDQYTRCTAIDLI  177 (274)
T ss_dssp             --------SCCTTSHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             --------ccCCCCceehhhhhHHHHHHHHHHHHHh
Confidence                    1222122344455455567777887775

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.41  E-value=0.00071  Score=57.54  Aligned_cols=155  Identities=15%  Similarity=0.120  Sum_probs=89.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC--CcccEEEeCC-------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTD-------   74 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~--~~~~v~~~~~-------   74 (300)
                      +.+.+.||||++-||..++..|++.|.       +|++.|++  +++++..+.++......  ...+++-..+       
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga-------~V~i~~r~--~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~   75 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA-------KVVIADIA--DDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDT   75 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESC--HHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHH
Confidence            456899999999999999999999885       79999986  45665444444321100  0001100001       


Q ss_pred             hhhhcCCCcEEEEeCCCCCC-C----CCcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           75 AVEACTGVNIAVMVGGFPRK-E----GMERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~-~----g~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                      ..+.+...|++|..||.... +    ..+..   ..+..|+.    .++..++.+.+..  ...+|++++....      
T Consensus        76 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~g~ii~iss~~~~------  147 (268)
T d2bgka1          76 TIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK--KGSIVFTASISSF------  147 (268)
T ss_dssp             HHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT--CEEEEEECCGGGT------
T ss_pred             HHHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC--CCCcccccccccc------
Confidence            12334578999999986432 1    22222   34555654    4555566666553  3467777765431      


Q ss_pred             HHCCCCCCCc-EEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          143 EFAPSIPAKN-ITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       143 ~~~~~~p~~~-i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                         ...+... .|+.++--...+.+.+|.+++  +..|+
T Consensus       148 ---~~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIr  181 (268)
T d2bgka1         148 ---TAGEGVSHVYTATKHAVLGLTTSLCTELG--EYGIR  181 (268)
T ss_dssp             ---CCCTTSCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             ---ccccccccccchhHHHHHhCHHHHHHHhC--hhCeE
Confidence               1112122 345555556677778888875  34454

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=97.40  E-value=0.00015  Score=63.85  Aligned_cols=103  Identities=16%  Similarity=0.130  Sum_probs=59.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEE---eC---Chhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA---TT---DAVE   77 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~---~~---~~~~   77 (300)
                      +.++|+||||+|++|++++..|++.|+       +|+.+-++.+..+..    .+...  +.. .+..   .+   ....
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~-------~V~~l~R~~~~~~~~----~~~~~--~~v-~~~~gD~~d~~~~~~~   67 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH-------HVRAQVHSLKGLIAE----ELQAI--PNV-TLFQGPLLNNVPLMDT   67 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC-------CEEEEESCSCSHHHH----HHHTS--TTE-EEEESCCTTCHHHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC-------eEEEEECCcchhhhh----hhccc--CCC-EEEEeeCCCcHHHHHH
Confidence            457899999999999999999998875       566664443211111    11110  000 0100   11   1346


Q ss_pred             hcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      +++++|.+++.....          ...+....++++++..+.+-  .+++++|.
T Consensus        68 a~~~~~~~~~~~~~~----------~~~~~~~~~~~~~aa~~agv--~~~v~~Ss  110 (350)
T d1xgka_          68 LFEGAHLAFINTTSQ----------AGDEIAIGKDLADAAKRAGT--IQHYIYSS  110 (350)
T ss_dssp             HHTTCSEEEECCCST----------TSCHHHHHHHHHHHHHHHSC--CSEEEEEE
T ss_pred             HhcCCceEEeecccc----------cchhhhhhhHHHHHHHHhCC--CceEEEee
Confidence            788999988864321          11344555677888877753  24555554

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.0032  Score=52.83  Aligned_cols=120  Identities=19%  Similarity=0.156  Sum_probs=71.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-----CcccEEEeC-----
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-----LLKGVVATT-----   73 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-----~~~~v~~~~-----   73 (300)
                      +.+.+.||||++-||..++..|++.|.       .|++.|+++  ++++....++......     ...+++-..     
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-------~V~i~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~   72 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-------KVALVDWNL--EAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDT   72 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHH
Confidence            346789999999999999999999885       799999863  5554444444321100     000110000     


Q ss_pred             --ChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhH----HHHHHHHHHHhhhcC-CCeEEEEecCch
Q 022227           74 --DAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNV----SIYKAQASALEQHAA-PNCKVLVVANPA  134 (300)
Q Consensus        74 --~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~----~i~~~i~~~i~~~~~-~~~~viv~sNP~  134 (300)
                        ...+.+...|++|..||......  -.+.+..|+    ...+..++.+.+... ....+|++++..
T Consensus        73 ~~~~~~~~G~iDilVnnAg~~~~~~--~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~  138 (254)
T d2gdza1          73 FRKVVDHFGRLDILVNNAGVNNEKN--WEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA  138 (254)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCSSS--HHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred             HHHHHHHcCCcCeeccccccccccc--chheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHh
Confidence              11233457899999999865332  334455554    455666666655432 125678877654

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.34  E-value=0.00062  Score=57.55  Aligned_cols=154  Identities=14%  Similarity=0.104  Sum_probs=84.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEe-------CC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVAT-------TD   74 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~-------~~   74 (300)
                      .+.+.||||++-||..++..|++.|.       +|++.+... ++.++....++.+....   ...+++-.       ..
T Consensus         6 GK~alITGas~GIG~aia~~la~~G~-------~Vvi~~~~~-~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~   77 (259)
T d1ja9a_           6 GKVALTTGAGRGIGRGIAIELGRRGA-------SVVVNYGSS-SKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDK   77 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEcCCC-hHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHH
Confidence            46789999999999999999999886       677765442 34444333333322100   00000000       01


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCC
Q 022227           75 AVEACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI  148 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~  148 (300)
                      ..+.+-.-|++|+.||......   .+.   ...+..|+...-.+.+.+.++-.++..++++++....        ..+.
T Consensus        78 ~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~--------~~~~  149 (259)
T d1ja9a_          78 AVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAV--------MTGI  149 (259)
T ss_dssp             HHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGT--------CCSC
T ss_pred             HHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccccc--------ccCC
Confidence            2233456799999998753221   122   2345566654444444444433223345555544321        1234


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHcCC
Q 022227          149 PAKNITCLTRLDHNRALGQISEKLNV  174 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l~v  174 (300)
                      |..-.|+.++--...+.+.+|.+++-
T Consensus       150 ~~~~~Y~asK~al~~l~r~lA~e~~~  175 (259)
T d1ja9a_         150 PNHALYAGSKAAVEGFCRAFAVDCGA  175 (259)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHhh
Confidence            43334566666666788888888863

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.34  E-value=0.002  Score=54.40  Aligned_cols=149  Identities=14%  Similarity=0.173  Sum_probs=83.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEE-EeC---------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVV-ATT---------   73 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~-~~~---------   73 (300)
                      +.+.+.||||++-||..++..|++.|.       +|++.|++  +++++..+.++....... .++. +..         
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-------~V~~~~r~--~~~l~~~~~~l~~~~~~~-~~~~~~~~Dvt~~~~v~   73 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA-------KVTITGRH--AERLEETRQQILAAGVSE-QNVNSVVADVTTDAGQD   73 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESC--HHHHHHHHHHHHHTTCCG-GGEEEEECCTTSHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHHHHhcCCCc-CceEEEEccCCCHHHHH
Confidence            345678999999999999999999885       79999986  456665555554322110 0110 111         


Q ss_pred             ----ChhhhcCCCcEEEEeCCCCCC-----C--CCcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           74 ----DAVEACTGVNIAVMVGGFPRK-----E--GMERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        74 ----~~~~a~~~aDvVi~~ag~~~~-----~--g~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                          ...+.+...|++|..||....     +  .++..   ..+..|+.    .++...+.+++..  . .+|++++...
T Consensus        74 ~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~--g-~iI~~~S~~~  150 (264)
T d1spxa_          74 EILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--G-EIVNISSIAS  150 (264)
T ss_dssp             HHHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--C-EEEEECCTTS
T ss_pred             HHHHHHHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCcccccc--C-cceeeeeecc
Confidence                112234578999999986421     1  11222   23455544    5566666665542  3 3555554332


Q ss_pred             hHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          136 TNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       136 ~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                      .       . .+.|..-.|+.++--...+-+.+|.+++
T Consensus       151 ~-------~-~~~~~~~~Y~asKaal~~lt~~lA~el~  180 (264)
T d1spxa_         151 G-------L-HATPDFPYYSIAKAAIDQYTRNTAIDLI  180 (264)
T ss_dssp             S-------S-SCCTTSHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             c-------c-ccCCCchhhhhhhhhHHHHHHHHHHHhc
Confidence            0       0 1223222355555555677777888775

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.32  E-value=0.0041  Score=52.21  Aligned_cols=154  Identities=16%  Similarity=0.149  Sum_probs=90.9

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeC-------Chh
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATT-------DAV   76 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~-------~~~   76 (300)
                      .+.||||++-||..++..|++.|.       .|++.|++  +++++....++.+....   ...+++-..       ...
T Consensus         4 ValITGas~GIG~aia~~la~~Ga-------~V~i~~r~--~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~   74 (257)
T d2rhca1           4 VALVTGATSGIGLEIARRLGKEGL-------RVFVCARG--EEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVV   74 (257)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESC--HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            347999999999999999999886       79999986  45666555555432110   000110000       122


Q ss_pred             hhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHHHHHHHHHHHhhh----cCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           77 EACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQH----AAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~~~----~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                      +.+...|++|..||......   .+.   .+.+..|+.....+.+.+.++    ......+|+++.....         .
T Consensus        75 ~~~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~---------~  145 (257)
T d2rhca1          75 ERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGK---------Q  145 (257)
T ss_dssp             HHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGT---------S
T ss_pred             HHhCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccc---------c
Confidence            33456899999999864321   222   345677877777776655432    1123456776654321         2


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      +.|..-.|+.++--...+.+.+|.+++  +..|+
T Consensus       146 ~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIr  177 (257)
T d2rhca1         146 GVVHAAPYSASKHGVVGFTKALGLELA--RTGIT  177 (257)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHTT--TSEEE
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHhh--hhCcE
Confidence            233222355566566678888898876  44455

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.30  E-value=0.00046  Score=54.97  Aligned_cols=98  Identities=7%  Similarity=0.020  Sum_probs=59.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc--ccEEEeCChhhhcCCCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL--KGVVATTDAVEACTGVN   83 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~--~~v~~~~~~~~a~~~aD   83 (300)
                      .+|+||| .|.+|+.++..|+..|+       +++.+|+++  ++++.    +........  .......+..+++.++|
T Consensus         3 ~nIg~IG-lG~MG~~mA~~L~~~G~-------~V~v~dr~~--~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~   68 (176)
T d2pgda2           3 ADIALIG-LAVMGQNLILNMNDHGF-------VVCAFNRTV--SKVDD----FLANEAKGTKVLGAHSLEEMVSKLKKPR   68 (176)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSST--HHHHH----HHHTTTTTSSCEECSSHHHHHHHBCSSC
T ss_pred             CcEEEEe-EhHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHHH----HHHhccccccccchhhhhhhhhhhcccc
Confidence            3699999 89999999999999876       699999974  44432    221111100  00111224567788999


Q ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        84 vVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      .++.+.-.               .+.+.++.+.+.....++..+|..|+
T Consensus        69 ~ii~~~~~---------------~~~v~~v~~~l~~~~~~g~iiid~sT  102 (176)
T d2pgda2          69 RIILLVKA---------------GQAVDNFIEKLVPLLDIGDIIIDGGN  102 (176)
T ss_dssp             EEEECSCT---------------THHHHHHHHHHHHHCCTTCEEEECSC
T ss_pred             eEEEecCc---------------hHHHHHHHHHHHhccccCcEEEecCc
Confidence            99987411               13333444555555555555555553

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.003  Score=54.40  Aligned_cols=154  Identities=18%  Similarity=0.176  Sum_probs=89.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-CcccEE-EeCC-------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVV-ATTD-------   74 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-~~~~v~-~~~~-------   74 (300)
                      +.+.+.||||++-||..++..|+..|.       .|++.|++  .++++..+.++...... ...++. +..|       
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga-------~Vvi~~r~--~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v   81 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGS-------NVVIASRK--LERLKSAADELQANLPPTKQARVIPIQCNIRNEEEV   81 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESC--HHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHH
Confidence            456899999999999999999999885       79999986  35665555555421100 011111 1111       


Q ss_pred             ------hhhhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHH
Q 022227           75 ------AVEACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNA  138 (300)
Q Consensus        75 ------~~~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~  138 (300)
                            ..+.+...|++|+.||......   .+.   ...+..|+.    .++..++.+.+..  ...+|+++....   
T Consensus        82 ~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~g~Ii~~ss~~~---  156 (297)
T d1yxma1          82 NNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH--GGSIVNIIVPTK---  156 (297)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH--CEEEEEECCCCT---
T ss_pred             HHHHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccc--cccccccccccc---
Confidence                  1223457899999998754221   122   234556644    4455555655554  345666654321   


Q ss_pred             HHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       139 ~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                             ...|..-.++.++--...+.+.+|.+++  +..|+
T Consensus       157 -------~~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIr  189 (297)
T d1yxma1         157 -------AGFPLAVHSGAARAGVYNLTKSLALEWA--CSGIR  189 (297)
T ss_dssp             -------TCCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEE
T ss_pred             -------ccccccccchhHHHHHHHHHHHHHHHhc--ccCce
Confidence                   1233222344455555677788888875  44454

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00091  Score=56.81  Aligned_cols=149  Identities=17%  Similarity=0.161  Sum_probs=84.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeC----------
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT----------   73 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~----------   73 (300)
                      +.+++.||||++-+|..++..|++.|.       .|++.|++  +++++....++..........+....          
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~-------~Vil~~r~--~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   83 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGA-------HVVVTARS--KETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFV   83 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESC--HHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHH
Confidence            456899999999999999999999885       79999986  46666554444322111000000000          


Q ss_pred             -ChhhhcCCCcEEEEeCCCCCCC---CCcHH---HHHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHH
Q 022227           74 -DAVEACTGVNIAVMVGGFPRKE---GMERK---DVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNALILK  142 (300)
Q Consensus        74 -~~~~a~~~aDvVi~~ag~~~~~---g~~r~---dl~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~  142 (300)
                       ...+.+...|+++..||.....   ..+..   ..+..|+    ..++.+.+.+++.   +..+|++++....      
T Consensus        84 ~~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~---~G~ii~isS~~~~------  154 (269)
T d1xu9a_          84 AQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS---NGSIVVVSSLAGK------  154 (269)
T ss_dssp             HHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEEEEGGGT------
T ss_pred             HHHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc---CCcceEeccchhc------
Confidence             1122345679999988764321   12222   2344553    4555666666543   2356676654431      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHcC
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN  173 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~  173 (300)
                         .+.|..-.|+.++---..+.+.++.++.
T Consensus       155 ---~~~p~~~~Y~asKaal~~~~~~La~El~  182 (269)
T d1xu9a_         155 ---VAYPMVAAYSASKFALDGFFSSIRKEYS  182 (269)
T ss_dssp             ---SCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence               2334223455555555566666666654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.27  E-value=0.00091  Score=56.56  Aligned_cols=164  Identities=11%  Similarity=0.039  Sum_probs=85.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc----CCcccEEEeC-----
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF----PLLKGVVATT-----   73 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~----~~~~~v~~~~-----   73 (300)
                      -+.+++.||||++-||..++..|++.|.       .|++.|+++  +++.....++.....    ....+++-..     
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga-------~V~i~~r~~--~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~   77 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-------NVAVIYRSA--ADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKT   77 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE-------EEEEEESSC--TTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHH
Confidence            3567899999999999999999999886       799999874  333333333322110    0000110000     


Q ss_pred             --ChhhhcCCCcEEEEeCCCCCCCC---CcHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEecCchhhHHHHH
Q 022227           74 --DAVEACTGVNIAVMVGGFPRKEG---MERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALIL  141 (300)
Q Consensus        74 --~~~~a~~~aDvVi~~ag~~~~~g---~~r~---dl~~~N~~----i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~  141 (300)
                        ...+.+...|++|+.||......   .+..   +.+..|+.    ..+.+.+.+.+... ...+++.+..........
T Consensus        78 ~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-~g~i~~~~s~~~~~~~~~  156 (260)
T d1h5qa_          78 IQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQ-KGSIVVTSSMSSQIINQS  156 (260)
T ss_dssp             HHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTSCCEE
T ss_pred             HHHHHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhccccccccc-ceEEEEeecccccccccc
Confidence              12233557899999998754221   2222   34556654    44556666655543 344555444332100000


Q ss_pred             HHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       142 ~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                       .. .+.|..-.|+.++--...+.+.+|.+++  +..|+
T Consensus       157 -~~-~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIr  191 (260)
T d1h5qa_         157 -SL-NGSLTQVFYNSSKAACSNLVKGLAAEWA--SAGIR  191 (260)
T ss_dssp             -ET-TEECSCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             -cc-ccCccccchhhhhhhHHHHHHHHHHHhc--hhCeE
Confidence             00 0001111234444445566777777775  44454

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.23  E-value=0.00033  Score=53.11  Aligned_cols=37  Identities=19%  Similarity=0.481  Sum_probs=31.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN   52 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~   52 (300)
                      |||.|+| .|.+|+.++..|...|.       +++++|.++  ++++
T Consensus         1 M~IvI~G-~G~~G~~la~~L~~~g~-------~v~vid~d~--~~~~   37 (132)
T d1lssa_           1 MYIIIAG-IGRVGYTLAKSLSEKGH-------DIVLIDIDK--DICK   37 (132)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCC-------CcceecCCh--hhhh
Confidence            6999999 69999999999988764       899999864  4444

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.20  E-value=0.0041  Score=53.03  Aligned_cols=154  Identities=6%  Similarity=0.005  Sum_probs=82.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEe-C----------C
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT-T----------D   74 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~-~----------~   74 (300)
                      +.+.||||+|.||..++..|+..|.       +|++.|+++  ++++..+.++.........-+..- +          .
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga-------~Vii~~r~~--~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~   96 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGA-------QCVIASRKM--DVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSE   96 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEECCH--HHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhh
Confidence            6799999999999999999999885       799999863  555544444433210000000000 0          1


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCC---Cc---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHH
Q 022227           75 AVEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEF  144 (300)
Q Consensus        75 ~~~a~~~aDvVi~~ag~~~~~g---~~---r~dl~~~N~~i----~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~  144 (300)
                      ..+.+...|++|..||......   .+   ..+.+..|...    .+..+........ ...+++.++....       .
T Consensus        97 ~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~i~~~ss~~~~-------~  168 (294)
T d1w6ua_          97 LIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQK-GAAFLSITTIYAE-------T  168 (294)
T ss_dssp             HHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CEEEEEECCTHHH-------H
T ss_pred             hhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccc-cccccccccchhh-------h
Confidence            2233457899999998754322   11   12233334333    2333333333332 3345555543321       1


Q ss_pred             CCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       145 ~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                        ..|..-.|+.++---..+.+.+|.+++  +..|+
T Consensus       169 --~~~~~~~YsasKaal~~ltk~lA~ela--~~gIr  200 (294)
T d1w6ua_         169 --GSGFVVPSASAKAGVEAMSKSLAAEWG--KYGMR  200 (294)
T ss_dssp             --CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             --cccccchHHHHHHHHHHHHHHHHHHHh--HhCeE
Confidence              112112245555555667778888876  44454

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=97.19  E-value=0.0016  Score=54.84  Aligned_cols=151  Identities=11%  Similarity=0.073  Sum_probs=81.9

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC-----CcccEE-----
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-----LLKGVV-----   70 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~-----~~~~v~-----   70 (300)
                      |+.+.+.|.||||++-||..++..|+..|.       .+++++.+.  ++++.. .++......     ....++     
T Consensus         1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~-------~vii~~r~~--~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~   70 (254)
T d1sbya1           1 MDLTNKNVIFVAALGGIGLDTSRELVKRNL-------KNFVILDRV--ENPTAL-AELKAINPKVNITFHTYDVTVPVAE   70 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCC-------SEEEEEESS--CCHHHH-HHHHHHCTTSEEEEEECCTTSCHHH
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCC-------EEEEEECCc--ccHHHH-HHHHhhCCCCCEEEEEeecCCCHHH
Confidence            777788999999999999999999999875       455554332  122211 111111100     000000     


Q ss_pred             E---eCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHH----HHHHHHHHHhhhc-CCCeEEEEecCchhhHHHHHH
Q 022227           71 A---TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS----IYKAQASALEQHA-APNCKVLVVANPANTNALILK  142 (300)
Q Consensus        71 ~---~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~----i~~~i~~~i~~~~-~~~~~viv~sNP~~~~~~~~~  142 (300)
                      .   .....+.+...|++|..||......  -...++.|+.    .++.+.+.+.+.. .+...+|+++.-+..      
T Consensus        71 ~~~~~~~~~~~~g~iDilvnnAG~~~~~~--~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~------  142 (254)
T d1sbya1          71 SKKLLKKIFDQLKTVDILINGAGILDDHQ--IERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGF------  142 (254)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCTTC--HHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT------
T ss_pred             HHHHHHHHHHHcCCCCEEEeCCCCCCHHH--HHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhc------
Confidence            0   0012233467899999999764332  2345566654    5566666775542 123567777654431      


Q ss_pred             HHCCCCCCCcEEeeehhhHHHHHHHHHHHc
Q 022227          143 EFAPSIPAKNITCLTRLDHNRALGQISEKL  172 (300)
Q Consensus       143 ~~~~~~p~~~i~~~t~ld~~R~~~~la~~l  172 (300)
                         .+.|..-.|+.++--...|.+.+|.++
T Consensus       143 ---~~~~~~~~Y~asKaal~~~t~~la~el  169 (254)
T d1sbya1         143 ---NAIHQVPVYSASKAAVVSFTNSLAKLA  169 (254)
T ss_dssp             ---SCCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---cCCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence               122222234555545556666666665

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.18  E-value=0.0003  Score=59.36  Aligned_cols=157  Identities=15%  Similarity=0.183  Sum_probs=87.1

Q ss_pred             CCCcEEEEEcCCC--hHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc-C--CcccEEEe-----
Q 022227            3 KEPVRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-P--LLKGVVAT-----   72 (300)
Q Consensus         3 ~~~~kV~IiGAaG--~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~-~--~~~~v~~~-----   72 (300)
                      .+.+++.||||+|  -+|..++..|++.|.       +|++.|+++   ++.....++..... .  ...+++-.     
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga-------~V~i~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   75 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA-------EVALSYQAE---RLRPEAEKLAEALGGALLFRADVTQDEELDA   75 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTC-------EEEEEESSG---GGHHHHHHHHHHTTCCEEEECCTTCHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC-------EEEEEeCcH---HHHHHHHHhhhccCcccccccccCCHHHHHH
Confidence            3567899999887  599999999999885       788888863   22212222211110 0  00000000     


Q ss_pred             --CChhhhcCCCcEEEEeCCCCCC-------CCCcHHH---HHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHH
Q 022227           73 --TDAVEACTGVNIAVMVGGFPRK-------EGMERKD---VMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI  140 (300)
Q Consensus        73 --~~~~~a~~~aDvVi~~ag~~~~-------~g~~r~d---l~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~  140 (300)
                        ....+.+...|++|+.||....       ...+..+   .+..|+.....+++.....-.++..+|++++....    
T Consensus        76 ~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~----  151 (256)
T d1ulua_          76 LFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE----  151 (256)
T ss_dssp             HHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT----
T ss_pred             HHHHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhc----
Confidence              0122334568999999986431       1122222   45667766666666655443334567777754321    


Q ss_pred             HHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       141 ~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                           .+.|....|+.++--...+.+.+|.+++  +..|+
T Consensus       152 -----~~~~~~~~Y~asKaal~~ltr~lA~ela--~~gIr  184 (256)
T d1ulua_         152 -----KVVPKYNVMAIAKAALEASVRYLAYELG--PKGVR  184 (256)
T ss_dssp             -----SBCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred             -----CCCCCchHHHHHHHHHHHHHHHHHHHhc--ccCCE
Confidence                 1223222345555555667777888875  44454

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.17  E-value=0.0051  Score=51.16  Aligned_cols=159  Identities=18%  Similarity=0.245  Sum_probs=90.4

Q ss_pred             E-EEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeC-------Ch
Q 022227            7 R-VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATT-------DA   75 (300)
Q Consensus         7 k-V~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~-------~~   75 (300)
                      + |.||||++-||..++..|++.|.--......+++.|++  .++++....++......   ...+++-..       ..
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~--~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~   79 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRT--AADLEKISLECRAEGALTDTITADISDMADVRRLTTHI   79 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESC--HHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCC--HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence            5 56899999999999999998875110111248888886  45565555555432100   000110000       12


Q ss_pred             hhhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHC
Q 022227           76 VEACTGVNIAVMVGGFPRKEG---MER---KDVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFA  145 (300)
Q Consensus        76 ~~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~  145 (300)
                      .+.+...|++|..||......   .+.   ...+..|+    ..++...+.+++..  ...+|++++-...         
T Consensus        80 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Ii~isS~~~~---------  148 (240)
T d2bd0a1          80 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH--SGHIFFITSVAAT---------  148 (240)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------
T ss_pred             HHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcC--CCceEEEechhhc---------
Confidence            334557899999998764321   122   23455564    45666677776653  3578888765431         


Q ss_pred             CCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       146 ~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      .+.|..-.|+.++--...|.+.+|.++.  +.+|+
T Consensus       149 ~~~~~~~~Y~asK~al~~lt~~la~el~--~~gIr  181 (240)
T d2bd0a1         149 KAFRHSSIYCMSKFGQRGLVETMRLYAR--KCNVR  181 (240)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEE
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHHhC--cCCeE
Confidence            2334222455555555667777787775  34455

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=97.16  E-value=0.0032  Score=52.64  Aligned_cols=153  Identities=14%  Similarity=0.141  Sum_probs=88.7

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhcc---CCcccEEEeC-------Chh
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATT-------DAV   76 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~---~~~~~v~~~~-------~~~   76 (300)
                      =|.||||++-+|..++..|++.|.       .|++.|.+. ++.++....++.....   ....+++-..       ...
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga-------~V~i~~~~~-~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~   74 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC-------KVLVNYARS-AKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAI   74 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence            467999999999999999999885       788877653 3444433333332110   0000110000       122


Q ss_pred             hhcCCCcEEEEeCCCCCCCC---CcH---HHHHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCC
Q 022227           77 EACTGVNIAVMVGGFPRKEG---MER---KDVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP  146 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~  146 (300)
                      +.+...|++|+.||......   .+.   ...+..|+    ...+..++.+.+..  ...+|++|+-...       .  
T Consensus        75 ~~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~IVnisS~~~~-------~--  143 (244)
T d1edoa_          75 DAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR--KGRIINIASVVGL-------I--  143 (244)
T ss_dssp             HHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHH-------H--
T ss_pred             HHcCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcC--CcEEEEEcChhhc-------C--
Confidence            33457899999998764321   222   23455554    45566666666653  4578888864431       1  


Q ss_pred             CCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       147 ~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      +.|..-.|+.++--...|-+.+|.+++  +..|+
T Consensus       144 ~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIr  175 (244)
T d1edoa_         144 GNIGQANYAAAKAGVIGFSKTAAREGA--SRNIN  175 (244)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEE
T ss_pred             CCCCCHHHHHHHHHHHHChHHHHHHHh--hhCcE
Confidence            233222456666666778888888875  44555

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.15  E-value=0.0013  Score=52.08  Aligned_cols=38  Identities=21%  Similarity=0.201  Sum_probs=32.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN   52 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~   52 (300)
                      .|||.||| .|.+|+.++..|+..|+       +|..+|+++  ++++
T Consensus         1 ~MkIGvIG-lG~MG~~ma~~L~~~G~-------~V~~~dr~~--~~~~   38 (178)
T d1pgja2           1 SMDVGVVG-LGVMGANLALNIAEKGF-------KVAVFNRTY--SKSE   38 (178)
T ss_dssp             CBSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSH--HHHH
T ss_pred             CCEEEEEe-ehHHHHHHHHHHHHCCC-------eEEEEECCH--HHHH
Confidence            37899999 89999999999998875       799999863  4443

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.12  E-value=0.00033  Score=55.33  Aligned_cols=46  Identities=20%  Similarity=0.164  Sum_probs=36.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD   60 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~   60 (300)
                      |||+|+||+|.+|++++..|+..|.       +|++.+++  +++++....++..
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~-------~V~l~~R~--~e~~~~l~~~i~~   46 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH-------EIVVGSRR--EEKAEAKAAEYRR   46 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEESS--HHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC-------EEEEEECC--HHHHHHHHHHHHh
Confidence            6999997689999999999998875       89999986  4666655555543

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.09  E-value=0.00033  Score=56.45  Aligned_cols=77  Identities=17%  Similarity=0.158  Sum_probs=44.0

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhh-hhhhhccCCcccEEEeCChhhhcC
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM-ELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~-dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      ++++.||+|+||+|++|.-++..|.....      +++..+--+.+.    |... +..... .............+.++
T Consensus         2 s~~kikVaIlGATGyvG~elirLL~~HP~------~ei~~l~S~~~a----G~~~~~~~~~~-~~~~~~~~~~~~~~~~~   70 (183)
T d2cvoa1           2 SGEEVRIAVLGASGYTGAEIVRLLANHPQ------FRIKVMTADRKA----GEQFGSVFPHL-ITQDLPNLVAVKDADFS   70 (183)
T ss_dssp             CSSCEEEEEESCSSHHHHHHHHHHTTCSS------EEEEEEECSTTT----TSCHHHHCGGG-TTSCCCCCBCGGGCCGG
T ss_pred             CCCccEEEEECcccHHHHHHHHHHHhCCC------ceEEEEeccccC----CCccccccccc-cccccccchhhhhhhhc
Confidence            35678999999999999999988876533      367666433221    2211 111111 00001111122345578


Q ss_pred             CCcEEEEeC
Q 022227           81 GVNIAVMVG   89 (300)
Q Consensus        81 ~aDvVi~~a   89 (300)
                      ++|+||.+.
T Consensus        71 ~~Dvvf~al   79 (183)
T d2cvoa1          71 NVDAVFCCL   79 (183)
T ss_dssp             GCSEEEECC
T ss_pred             ccceeeecc
Confidence            999999874

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=97.07  E-value=0.00033  Score=59.21  Aligned_cols=37  Identities=16%  Similarity=0.242  Sum_probs=30.7

Q ss_pred             CCCcEEEEEcCCCh--HHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            3 KEPVRVLVTGAAGQ--IGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         3 ~~~~kV~IiGAaG~--vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      ++.+++.||||+|.  +|..++..|++.|.       +|+|.+.++
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga-------~Vil~~~~~   42 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGA-------QLVLTGFDR   42 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTC-------EEEEEECSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCC-------EEEEEeCCh
Confidence            35579999998775  99999999999885       789998864

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.00  E-value=0.00023  Score=56.00  Aligned_cols=74  Identities=8%  Similarity=0.045  Sum_probs=46.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .+||+|+| +|.+|++++..|...|+       +|+++|++  .++++..+..+....... ..........+.+...|+
T Consensus         2 ~K~IliiG-aG~~G~~~a~~L~~~g~-------~V~v~dr~--~~~a~~l~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~   70 (182)
T d1e5qa1           2 TKSVLMLG-SGFVTRPTLDVLTDSGI-------KVTVACRT--LESAKKLSAGVQHSTPIS-LDVNDDAALDAEVAKHDL   70 (182)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHTTTC-------EEEEEESC--HHHHHHHHTTCTTEEEEE-CCTTCHHHHHHHHTTSSE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEECC--hHHHHHHHhccccccccc-ccccchhhhHhhhhccce
Confidence            46999999 69999999999998775       79999996  355553333222111000 000001134455778888


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      ++.+.
T Consensus        71 ~i~~~   75 (182)
T d1e5qa1          71 VISLI   75 (182)
T ss_dssp             EEECS
T ss_pred             eEeec
Confidence            87653

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.96  E-value=0.0019  Score=51.51  Aligned_cols=78  Identities=15%  Similarity=0.247  Sum_probs=44.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC--CcccEEEeCChhhhcCCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEACTGV   82 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~--~~~~v~~~~~~~~a~~~a   82 (300)
                      |+||+|+||+|++|.-+...|.....      +++.-+-.... +...|....-.+....  ....+....+.....+++
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~------~ei~~l~~~s~-~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPH------MTITALTVSAQ-SNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADV   73 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTT------EEEEEEEEETT-CTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTC
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCC------CceEeeEeecc-cccccccccccccccccccccccccchhhhhhhccc
Confidence            47999999999999999998887543      25543322110 1112222211111111  122333444555667899


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |++|.+.
T Consensus        74 dvvf~al   80 (179)
T d2g17a1          74 DVVFLAT   80 (179)
T ss_dssp             CEEEECS
T ss_pred             ceeeccc
Confidence            9999974

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.86  E-value=0.0074  Score=50.68  Aligned_cols=79  Identities=13%  Similarity=0.104  Sum_probs=48.7

Q ss_pred             CCcEEEEEcCCC--hHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc---ccEEE-------
Q 022227            4 EPVRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL---KGVVA-------   71 (300)
Q Consensus         4 ~~~kV~IiGAaG--~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~---~~v~~-------   71 (300)
                      +.+++.||||+|  -||..++..|+..|.       +|++.|+++.   ++....++........   ..+..       
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga-------~V~i~~r~~~---~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~   73 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-------TLAFTYLNES---LEKRVRPIAQELNSPYVYELDVSKEEHFKSL   73 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-------EEEEEESSTT---THHHHHHHHHHTTCCCEEECCTTCHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCC-------EEEEEeCCHH---HHHHHHHHHhhCCceeEeeecccchhhHHHH
Confidence            457899999887  599999999999886       8999998742   2222223322211100   00000       


Q ss_pred             eCChhhhcCCCcEEEEeCCCC
Q 022227           72 TTDAVEACTGVNIAVMVGGFP   92 (300)
Q Consensus        72 ~~~~~~a~~~aDvVi~~ag~~   92 (300)
                      .....+.+...|++|+.+|..
T Consensus        74 ~~~~~~~~g~id~lV~nag~~   94 (274)
T d2pd4a1          74 YNSVKKDLGSLDFIVHSVAFA   94 (274)
T ss_dssp             HHHHHHHTSCEEEEEECCCCC
T ss_pred             HHHHHHHcCCCCeEEeecccc
Confidence            012234456789999998864

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.82  E-value=0.00087  Score=51.74  Aligned_cols=71  Identities=24%  Similarity=0.342  Sum_probs=43.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      ++||+|+||+|++|.-++..|.+++.    ...++.++-...+    .|......      ...........+.++++|+
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~h----P~~~l~~~~s~~~----~Gk~i~~~------~~~~~~~~~~~~~~~~~d~   67 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDF----PLHRLHLLASAES----AGQRMGFA------ESSLRVGDVDSFDFSSVGL   67 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTC----CCSCEEEEECTTT----TTCEEEET------TEEEECEEGGGCCGGGCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC----CceEEEEEeeccc----CCcceeec------cccchhccchhhhhccceE
Confidence            58999999999999999988865431    1126777755422    22221111      1222333333456789999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      +|+++
T Consensus        68 vf~a~   72 (144)
T d2hjsa1          68 AFFAA   72 (144)
T ss_dssp             EEECS
T ss_pred             EEecC
Confidence            99875

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.0056  Score=50.96  Aligned_cols=155  Identities=18%  Similarity=0.169  Sum_probs=87.0

Q ss_pred             CCcEEEEEcCCC--hHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEE-eC-------
Q 022227            4 EPVRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA-TT-------   73 (300)
Q Consensus         4 ~~~kV~IiGAaG--~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~-~~-------   73 (300)
                      +.++|.||||+|  -+|+.++..|++.|.       +|++.|+++   ++.....++....... ..... .+       
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~-------~V~i~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   72 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGA-------ELAFTYQND---KLKGRVEEFAAQLGSD-IVLQCDVAEDASIDT   72 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-------EEEEEESST---TTHHHHHHHHHHTTCC-CEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCC-------EEEEEeCCH---HHHHHHHHHHhhcCCc-ceeecccchHHHHHH
Confidence            457899999877  589999999999885       799999863   2222222222211000 00000 00       


Q ss_pred             ---ChhhhcCCCcEEEEeCCCCCCCC---C-----cH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHH
Q 022227           74 ---DAVEACTGVNIAVMVGGFPRKEG---M-----ER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL  139 (300)
Q Consensus        74 ---~~~~a~~~aDvVi~~ag~~~~~g---~-----~r---~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~  139 (300)
                         ...+.+...|++|+.++......   .     ..   ...+..|...+..+.+.+..+-.+...++++|.....   
T Consensus        73 ~~~~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~---  149 (258)
T d1qsga_          73 MFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE---  149 (258)
T ss_dssp             HHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT---
T ss_pred             HHHHhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhc---
Confidence               11222345689999887642211   1     11   1223455666666666666554334456666654421   


Q ss_pred             HHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       140 ~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                            .+.|..-.|+.++--...+.+.+|++++  +..|+
T Consensus       150 ------~~~~~~~~Y~~sKaal~~ltr~lA~el~--~~gIr  182 (258)
T d1qsga_         150 ------RAIPNYNVMGLAKASLEANVRYMANAMG--PEGVR  182 (258)
T ss_dssp             ------SBCTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEE
T ss_pred             ------cCCCCcHHHHHHHHHHHHHHHHHHHHhC--ccCce
Confidence                  2334333466666667788889999987  45565

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.82  E-value=0.0019  Score=50.52  Aligned_cols=73  Identities=18%  Similarity=0.219  Sum_probs=50.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +..||+|+| +|.+|..++..|...+. .     ++.++.+.  .++++..+..+..       ....-.++.+++.++|
T Consensus        23 ~~~~ilviG-aG~~g~~v~~~L~~~g~-~-----~i~v~nRt--~~ka~~l~~~~~~-------~~~~~~~~~~~l~~~D   86 (159)
T d1gpja2          23 HDKTVLVVG-AGEMGKTVAKSLVDRGV-R-----AVLVANRT--YERAVELARDLGG-------EAVRFDELVDHLARSD   86 (159)
T ss_dssp             TTCEEEEES-CCHHHHHHHHHHHHHCC-S-----EEEEECSS--HHHHHHHHHHHTC-------EECCGGGHHHHHHTCS
T ss_pred             ccCeEEEEC-CCHHHHHHHHHHHhcCC-c-----EEEEEcCc--HHHHHHHHHhhhc-------ccccchhHHHHhccCC
Confidence            457999999 69999999999998764 1     68888775  3555444333321       1111236788899999


Q ss_pred             EEEEeCCCC
Q 022227           84 IAVMVGGFP   92 (300)
Q Consensus        84 vVi~~ag~~   92 (300)
                      +||.+-+.+
T Consensus        87 ivi~atss~   95 (159)
T d1gpja2          87 VVVSATAAP   95 (159)
T ss_dssp             EEEECCSSS
T ss_pred             EEEEecCCC
Confidence            999986544

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0068  Score=50.26  Aligned_cols=157  Identities=15%  Similarity=0.088  Sum_probs=85.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEE-------eCChh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA-------TTDAV   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~-------~~~~~   76 (300)
                      +.+.+.||||++-+|..++..|++.|.       .|++.|+++  ++++....++..........+..       .....
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   74 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGA-------SAVLLDLPN--SGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAK   74 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECTT--SSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHHhCCCcccccccccccccccccccccc
Confidence            556788999999999999999999886       799999864  45554444443221100000000       00112


Q ss_pred             hhcCCCcEEEEeCCCCCC-------CC--Cc---HHHHHHhhHHHHHHHHHHH----hhhc----CCCeEEEEecCchhh
Q 022227           77 EACTGVNIAVMVGGFPRK-------EG--ME---RKDVMSKNVSIYKAQASAL----EQHA----APNCKVLVVANPANT  136 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~~~~-------~g--~~---r~dl~~~N~~i~~~i~~~i----~~~~----~~~~~viv~sNP~~~  136 (300)
                      ......|..+..++....       +.  .+   -...+..|+...-.+.+.+    .+..    .+...+|++|.....
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~  154 (248)
T d2o23a1          75 GKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAF  154 (248)
T ss_dssp             HHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH
T ss_pred             cccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhc
Confidence            334557888876654221       11  11   1234566655544444443    3221    123467777765431


Q ss_pred             HHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       137 ~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                             .  +.|..-.|+.++--...+.+.+|.+++  +..|+
T Consensus       155 -------~--~~~~~~~Y~asKaal~~lt~~la~e~~--~~gIr  187 (248)
T d2o23a1         155 -------E--GQVGQAAYSASKGGIVGMTLPIARDLA--PIGIR  187 (248)
T ss_dssp             -------H--CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             -------c--CCCCchHHHHHHHHHHHHHHHHHHHhc--ccCcc
Confidence                   1  223222355555556677788888875  44454

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.76  E-value=0.0027  Score=49.21  Aligned_cols=60  Identities=17%  Similarity=0.180  Sum_probs=37.4

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEEE
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAV   86 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvVi   86 (300)
                      ||++|| .|.+|+.++..|+..+.       .++ ++...  ++....   ......        .....+.+.++|++|
T Consensus         2 kIg~IG-lG~MG~~ma~~L~~~g~-------~~~-~~~~~--~~~~~~---~~~~~~--------~~~~~~~~~~~~~~i   59 (156)
T d2cvza2           2 KVAFIG-LGAMGYPMAGHLARRFP-------TLV-WNRTF--EKALRH---QEEFGS--------EAVPLERVAEARVIF   59 (156)
T ss_dssp             CEEEEC-CSTTHHHHHHHHHTTSC-------EEE-ECSST--HHHHHH---HHHHCC--------EECCGGGGGGCSEEE
T ss_pred             eEEEEe-HHHHHHHHHHHHHhCCC-------EEE-EeCCH--HHHHHH---HHHcCC--------cccccccccceeEEE
Confidence            799999 89999999999987653       444 44432  222211   111110        113346678899988


Q ss_pred             Ee
Q 022227           87 MV   88 (300)
Q Consensus        87 ~~   88 (300)
                      .+
T Consensus        60 ~~   61 (156)
T d2cvza2          60 TC   61 (156)
T ss_dssp             EC
T ss_pred             ec
Confidence            86

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.75  E-value=0.0054  Score=51.34  Aligned_cols=157  Identities=10%  Similarity=0.043  Sum_probs=87.1

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCC-------hhhhc
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD-------AVEAC   79 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~-------~~~a~   79 (300)
                      ...||||++.+|..++..|++.|.       .|++.|++.  ++++.... +......  .++.-..+       ..+.+
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga-------~V~i~~r~~--~~~~~~~~-~~~~~~~--~dv~~~~~~~~~~~~~~~~~   69 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH-------TVACHDESF--KQKDELEA-FAETYPQ--LKPMSEQEPAELIEAVTSAY   69 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC-------EEEECCGGG--GSHHHHHH-HHHHCTT--SEECCCCSHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHh-hhCcEEE--eccCCHHHHHHHHHHHHHHc
Confidence            578999999999999999999885       799999853  33321111 1111100  11111112       23345


Q ss_pred             CCCcEEEEeCCCCC--CC--CCcHHH---HHHhh----HHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCC
Q 022227           80 TGVNIAVMVGGFPR--KE--GMERKD---VMSKN----VSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI  148 (300)
Q Consensus        80 ~~aDvVi~~ag~~~--~~--g~~r~d---l~~~N----~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~  148 (300)
                      -..|++|..||...  ++  ..+..+   .+..|    ...++.+.+.+++..  ...+|++|+-...         .+.
T Consensus        70 G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~--~G~IV~isS~~~~---------~~~  138 (252)
T d1zmta1          70 GQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK--SGHIIFITSATPF---------GPW  138 (252)
T ss_dssp             SCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCSTTT---------SCC
T ss_pred             CCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc--cceeecccccccc---------ccc
Confidence            57899999888642  22  123332   33444    455667777777764  3467777754421         122


Q ss_pred             CCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEEEEEecC
Q 022227          149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN  187 (300)
Q Consensus       149 p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~~~V~G~  187 (300)
                      |..-.|+.++--...+-+.+|++++-.--.|..+. .|.
T Consensus       139 ~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~-PG~  176 (252)
T d1zmta1         139 KELSTYTSARAGACTLANALSKELGEYNIPVFAIG-PNY  176 (252)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEE-ESS
T ss_pred             ccccccccccccHHHHHHHHHHHhcccCcEEEEEe-cCC
Confidence            32223555555556677778888753333444333 453

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.0038  Score=52.85  Aligned_cols=121  Identities=17%  Similarity=0.096  Sum_probs=72.8

Q ss_pred             CcEE-EEEcCCChHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC---cccEEEe-------
Q 022227            5 PVRV-LVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVAT-------   72 (300)
Q Consensus         5 ~~kV-~IiGAaG~vG~~la~~L~~~-~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~---~~~v~~~-------   72 (300)
                      .++| .||||++-||..++..|++. +.       .|++.+++  .++++..+.+|.......   ..++.-.       
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~-------~Vi~~~r~--~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~   72 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSG-------DVVLTARD--VTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALR   72 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-------EEEEEESS--HHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCC-------EEEEEECC--HHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHH
Confidence            3567 58899999999999999875 53       79999986  456665555554321100   0000000       


Q ss_pred             CChhhhcCCCcEEEEeCCCCCCC---CCcHH---HHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCch
Q 022227           73 TDAVEACTGVNIAVMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA  134 (300)
Q Consensus        73 ~~~~~a~~~aDvVi~~ag~~~~~---g~~r~---dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~  134 (300)
                      ....+.+...|++|..||.....   ..+..   ..+..|.-....+.+.+...-.+..++|++++-.
T Consensus        73 ~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~  140 (275)
T d1wmaa1          73 DFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIM  140 (275)
T ss_dssp             HHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHH
T ss_pred             HHHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence            01223345789999999975322   12222   3466787777777776665433346788887643

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.64  E-value=0.0021  Score=50.74  Aligned_cols=78  Identities=15%  Similarity=0.170  Sum_probs=51.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +|-||+|+| +|.+|..-+......|-       ++..+|.+.  ++++.....+....   .........+.+++++||
T Consensus        31 ~pa~V~ViG-aGvaG~~A~~~A~~lGA-------~V~~~D~~~--~~l~~l~~~~~~~~---~~~~~~~~~l~~~~~~aD   97 (168)
T d1pjca1          31 KPGKVVILG-GGVVGTEAAKMAVGLGA-------QVQIFDINV--ERLSYLETLFGSRV---ELLYSNSAEIETAVAEAD   97 (168)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHGGGS---EEEECCHHHHHHHHHTCS
T ss_pred             CCcEEEEEC-CChHHHHHHHHHhhCCC-------EEEEEeCcH--HHHHHHHHhhcccc---eeehhhhhhHHHhhccCc
Confidence            578999999 79999998887776653       799999963  55543322221110   000011124578899999


Q ss_pred             EEEEeCCCCCC
Q 022227           84 IAVMVGGFPRK   94 (300)
Q Consensus        84 vVi~~ag~~~~   94 (300)
                      +||-++-.|-+
T Consensus        98 ivI~aalipG~  108 (168)
T d1pjca1          98 LLIGAVLVPGR  108 (168)
T ss_dssp             EEEECCCCTTS
T ss_pred             EEEEeeecCCc
Confidence            99999877644

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0018  Score=45.76  Aligned_cols=73  Identities=15%  Similarity=0.133  Sum_probs=48.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +.+||+|+| .|-.|.+++..|.+.|.       ++.++|...+.+..    .++.+     ...+.........+.++|
T Consensus         4 ~~K~v~ViG-lG~sG~s~a~~L~~~g~-------~v~~~D~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~~d   66 (93)
T d2jfga1           4 QGKNVVIIG-LGLTGLSCVDFFLARGV-------TPRVMDTRMTPPGL----DKLPE-----AVERHTGSLNDEWLMAAD   66 (93)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHHHTTC-------CCEEEESSSSCTTG----GGSCT-----TSCEEESBCCHHHHHHCS
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHHCCC-------EEEEeeCCcCchhH----HHHhh-----ccceeecccchhhhccCC
Confidence            456899999 79999999999998875       68899986432211    11111     112222223355678999


Q ss_pred             EEEEeCCCCC
Q 022227           84 IAVMVGGFPR   93 (300)
Q Consensus        84 vVi~~ag~~~   93 (300)
                      +||.+-|+|.
T Consensus        67 ~vi~SPGi~~   76 (93)
T d2jfga1          67 LIVASPGIAL   76 (93)
T ss_dssp             EEEECTTSCT
T ss_pred             EEEECCCCCC
Confidence            9999977763

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.54  E-value=0.0029  Score=47.45  Aligned_cols=33  Identities=24%  Similarity=0.279  Sum_probs=28.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      +|++|+| .|.+|+.++..|...|.       +++++|.++
T Consensus         1 k~~iIiG-~G~~G~~la~~L~~~g~-------~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIG-LGRFGGSIVKELHRMGH-------EVLAVDINE   33 (134)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHHHTTC-------CCEEEESCH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEecCcH
Confidence            4689999 79999999999998875       689999864

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.52  E-value=0.0018  Score=51.65  Aligned_cols=74  Identities=16%  Similarity=0.158  Sum_probs=42.1

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      ++||+|+||+|++|.-++..|.....      +++..+--+.    ..|...+-.+........ ....+.++..+++|+
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~------~ei~~l~s~~----~aG~~i~~~~p~~~~~~~-~~~~~~~~~~~~~dv   69 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPE------AKITYLSSRT----YAGKKLEEIFPSTLENSI-LSEFDPEKVSKNCDV   69 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTT------EEEEEEECST----TTTSBHHHHCGGGCCCCB-CBCCCHHHHHHHCSE
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCC------ceEEEeeccc----cCCCcccccCchhhcccc-ccccCHhHhccccce
Confidence            37999999999999999988876432      3665553221    122222111111110111 112345555678999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      ||.+.
T Consensus        70 vf~a~   74 (176)
T d1vkna1          70 LFTAL   74 (176)
T ss_dssp             EEECC
T ss_pred             EEEcc
Confidence            99875

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.50  E-value=0.016  Score=42.14  Aligned_cols=71  Identities=8%  Similarity=0.077  Sum_probs=45.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      .+.+||.|+| +|.+|..-+..|+..|.       .+.+++....++ +.    .+.+..   .-.+....-..+++.++
T Consensus        10 l~~k~vlVvG-~G~va~~ka~~ll~~ga-------~v~v~~~~~~~~-~~----~~~~~~---~i~~~~~~~~~~dl~~~   73 (113)
T d1pjqa1          10 LRDRDCLIVG-GGDVAERKARLLLEAGA-------RLTVNALTFIPQ-FT----VWANEG---MLTLVEGPFDETLLDSC   73 (113)
T ss_dssp             CBTCEEEEEC-CSHHHHHHHHHHHHTTB-------EEEEEESSCCHH-HH----HHHTTT---SCEEEESSCCGGGGTTC
T ss_pred             eCCCEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEeccCChH-HH----HHHhcC---CceeeccCCCHHHhCCC
Confidence            3567999999 79999999999998764       788888754322 11    111111   00111122235679999


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      ++|+.+.
T Consensus        74 ~lv~~at   80 (113)
T d1pjqa1          74 WLAIAAT   80 (113)
T ss_dssp             SEEEECC
T ss_pred             cEEeecC
Confidence            9988863

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.0043  Score=48.68  Aligned_cols=75  Identities=19%  Similarity=0.174  Sum_probs=45.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEE-EEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVIL-HMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l-~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      +.+||+|.||+|.+|+.++..+.+..-      .++ ..+|.... +.+   -.|+..........+..+.+..+.++++
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~------~~lv~~~~~~~~-~~~---g~d~~~~~~~~~~~~~~~~~~~~~~~~~   72 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEG------VQLGAALEREGS-SLL---GSDAGELAGAGKTGVTVQSSLDAVKDDF   72 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTT------EECCCEECCTTC-TTC---SCCTTCSSSSSCCSCCEESCSTTTTTSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC------CEEEEEEecccc-hhc---cchhhhhhccccCCceeeccHHHHhccc
Confidence            568999999999999999998876531      132 44565421 111   1122222111123455667788888999


Q ss_pred             cEEEEe
Q 022227           83 NIAVMV   88 (300)
Q Consensus        83 DvVi~~   88 (300)
                      |+||=.
T Consensus        73 DViIDF   78 (162)
T d1diha1          73 DVFIDF   78 (162)
T ss_dssp             SEEEEC
T ss_pred             ceEEEe
Confidence            987653

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.30  E-value=0.0028  Score=52.12  Aligned_cols=35  Identities=26%  Similarity=0.274  Sum_probs=30.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA   47 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~   47 (300)
                      +++.||||++-||..++..|++.|.       +|++.|++++
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga-------~V~i~~~~~~   36 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGY-------RVVVLDLRRE   36 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC-------EEEEEESSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCcc
Confidence            4688999999999999999999885       7999998753

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.18  E-value=0.0017  Score=54.37  Aligned_cols=165  Identities=15%  Similarity=0.102  Sum_probs=81.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeC-------Chh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT-------DAV   76 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~-------~~~   76 (300)
                      +++.|.||||++-||..++..|+..|..     ..|++.++++  ++++...............+++-..       ...
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~-----~~Vi~~~R~~--~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~   74 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNI-----RHIIATARDV--EKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVG   74 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTC-----CEEEEEESSG--GGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCC-----CEEEEEeCCH--HHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHH
Confidence            4468999999999999999999987631     1567776653  4443221100000000000000000       011


Q ss_pred             hhcC--CCcEEEEeCCCCCC--C--CCcH---HHHHHhhHHH----HHHHHHHHhhhcCC---------CeEEEEecCch
Q 022227           77 EACT--GVNIAVMVGGFPRK--E--GMER---KDVMSKNVSI----YKAQASALEQHAAP---------NCKVLVVANPA  134 (300)
Q Consensus        77 ~a~~--~aDvVi~~ag~~~~--~--g~~r---~dl~~~N~~i----~~~i~~~i~~~~~~---------~~~viv~sNP~  134 (300)
                      +.+.  +.|++|..||....  +  ..+.   ...+..|+..    ++.+.+.+++...+         ...++.++...
T Consensus        75 ~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~  154 (250)
T d1yo6a1          75 EIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGL  154 (250)
T ss_dssp             HHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGG
T ss_pred             HHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceecccccccccc
Confidence            1222  48999999997422  1  2222   2345566544    44555555544211         23456555443


Q ss_pred             hhHHHHHHHHCCCCCCC-c-EEeeehhhHHHHHHHHHHHcCCCCCCeEE
Q 022227          135 NTNALILKEFAPSIPAK-N-ITCLTRLDHNRALGQISEKLNVQVSDVKN  181 (300)
Q Consensus       135 ~~~~~~~~~~~~~~p~~-~-i~~~t~ld~~R~~~~la~~l~v~~~~V~~  181 (300)
                      ......    ..+.+.. . -|+.++.-...+.+.+|+++.  +..|+.
T Consensus       155 ~~~~~~----~~~~~~~~~~aY~aSKaal~~l~~~la~el~--~~gI~v  197 (250)
T d1yo6a1         155 GSITDN----TSGSAQFPVLAYRMSKAAINMFGRTLAVDLK--DDNVLV  197 (250)
T ss_dssp             GCSTTC----CSTTSSSCBHHHHHHHHHHHHHHHHHHHHTG--GGTCEE
T ss_pred             ccccCC----cccccchhHHHHHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence            321110    0111111 1 255566666677788888864  455653

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.15  E-value=0.037  Score=42.72  Aligned_cols=67  Identities=19%  Similarity=0.323  Sum_probs=39.0

Q ss_pred             CcEEEEEcCCChHHHH-HHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC-CC
Q 022227            5 PVRVLVTGAAGQIGYA-LVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT-GV   82 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~-la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~-~a   82 (300)
                      .+||+|+| +|.+|.. .+..|...+      ..+++++|.++  ++++..+-++....        ..++.++.++ +.
T Consensus         1 tirvgiiG-~G~~~~~~~~~~l~~~~------~~~~~~~d~~~--~~~~~~~~~~~~~~--------~~~~~~~ll~~~i   63 (167)
T d1xeaa1           1 SLKIAMIG-LGDIAQKAYLPVLAQWP------DIELVLCTRNP--KVLGTLATRYRVSA--------TCTDYRDVLQYGV   63 (167)
T ss_dssp             CEEEEEEC-CCHHHHHTHHHHHTTST------TEEEEEECSCH--HHHHHHHHHTTCCC--------CCSSTTGGGGGCC
T ss_pred             CeEEEEEc-CCHHHHHHHHHHHHhCC------CcEEEEEECCH--HHHHHHHHhccccc--------ccccHHHhccccc
Confidence            37999999 7999976 455544332      23788888753  44443322221110        1234445454 68


Q ss_pred             cEEEEe
Q 022227           83 NIAVMV   88 (300)
Q Consensus        83 DvVi~~   88 (300)
                      |+|+++
T Consensus        64 D~V~I~   69 (167)
T d1xeaa1          64 DAVMIH   69 (167)
T ss_dssp             SEEEEC
T ss_pred             ceeccc
Confidence            999886

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.84  E-value=0.13  Score=42.10  Aligned_cols=79  Identities=14%  Similarity=0.074  Sum_probs=48.2

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCc----ccEEEeCC--------
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL----KGVVATTD--------   74 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~----~~v~~~~~--------   74 (300)
                      -..||||++-+|..++..|++.|.       +|++.|++. ++.++....++........    .......+        
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~-------~Vvi~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF-------RVVVHYRHS-EGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDI   74 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCc-hHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHH
Confidence            357999999999999999999886       899999874 3333333333432211000    00000001        


Q ss_pred             ---hhhhcCCCcEEEEeCCCCC
Q 022227           75 ---AVEACTGVNIAVMVGGFPR   93 (300)
Q Consensus        75 ---~~~a~~~aDvVi~~ag~~~   93 (300)
                         ..+.+...|++|..||...
T Consensus        75 ~~~~~~~~g~iDilvnnAG~~~   96 (266)
T d1mxha_          75 IDCSFRAFGRCDVLVNNASAYY   96 (266)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHhCCCCEEEECCccCC
Confidence               1223456899999998753

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.83  E-value=0.058  Score=40.12  Aligned_cols=24  Identities=13%  Similarity=0.325  Sum_probs=20.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGV   29 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~   29 (300)
                      |||+|.||+|.+|+.++..+...+
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~   24 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKG   24 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCC
Confidence            599999999999999987776654

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.81  E-value=0.021  Score=47.18  Aligned_cols=157  Identities=15%  Similarity=0.109  Sum_probs=79.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHh---cccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccC---CcccEEEeCChh---
Q 022227            6 VRVLVTGAAGQIGYALVPMIAR---GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV---   76 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~---~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~---~~~~v~~~~~~~---   76 (300)
                      ++|.||||++-||..++..|+.   .|.       .|++.++++  ++++.. .++......   ...+++-..+..   
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~-------~V~~~~r~~--~~~~~~-~~~~~~~~~~~~~~~Dvs~~~~v~~~~   72 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQ-------HLFTTCRNR--EQAKEL-EDLAKNHSNIHILEIDLRNFDAYDKLV   72 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCS-------EEEEEESCT--TSCHHH-HHHHHHCTTEEEEECCTTCGGGHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHH-HHHHhcCCcEEEEEEEeccHHHHHHHH
Confidence            5799999999999999998874   332       788988864  444422 122211100   000110000111   


Q ss_pred             h------hcCCCcEEEEeCCCCCCCC----CcHH---HHHHhhHH----HHHHHHHHHhhhc---------CCCeEEEEe
Q 022227           77 E------ACTGVNIAVMVGGFPRKEG----MERK---DVMSKNVS----IYKAQASALEQHA---------APNCKVLVV  130 (300)
Q Consensus        77 ~------a~~~aDvVi~~ag~~~~~g----~~r~---dl~~~N~~----i~~~i~~~i~~~~---------~~~~~viv~  130 (300)
                      +      .....|++|..||.....+    .+..   +.+..|+.    .++.+.+.+++..         .....+|++
T Consensus        73 ~~i~~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i  152 (248)
T d1snya_          73 ADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINM  152 (248)
T ss_dssp             HHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEE
T ss_pred             hhhHHHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccc
Confidence            1      1245899999998743221    1222   34555643    3445555555431         112357777


Q ss_pred             cCchhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          131 ANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       131 sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                      ++-+..+.     . ...|..-.|+.++.-...+.+.+|.++.  +..|+
T Consensus       153 ~S~~g~~~-----~-~~~~~~~~Y~aSKaal~~lt~~la~e~~--~~gI~  194 (248)
T d1snya_         153 SSILGSIQ-----G-NTDGGMYAYRTSKSALNAATKSLSVDLY--PQRIM  194 (248)
T ss_dssp             CCGGGCST-----T-CCSCCCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred             cccccccC-----C-CCCCChHHHHHHHHHHHHHHHHHHHHhC--CCCeE
Confidence            75443210     0 0111111245555555667777777764  34455

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.028  Score=43.77  Aligned_cols=71  Identities=8%  Similarity=0.073  Sum_probs=46.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +.++|+|+| +|-.+.++++.|...+.       ++.+++++  .++++..+..+.+.     ..+............+|
T Consensus        17 ~~k~vlIlG-aGGaarai~~al~~~g~-------~i~I~nRt--~~ka~~l~~~~~~~-----~~~~~~~~~~~~~~~~d   81 (170)
T d1nyta1          17 PGLRILLIG-AGGASRGVLLPLLSLDC-------AVTITNRT--VSRAEELAKLFAHT-----GSIQALSMDELEGHEFD   81 (170)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSS--HHHHHHHHHHTGGG-----SSEEECCSGGGTTCCCS
T ss_pred             CCCEEEEEC-CcHHHHHHHHHhcccce-------EEEeccch--HHHHHHHHHHHhhc-----ccccccccccccccccc
Confidence            457999999 69999999999988763       68888875  35555433333221     12333323333456799


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +||.+-
T Consensus        82 liIN~T   87 (170)
T d1nyta1          82 LIINAT   87 (170)
T ss_dssp             EEEECC
T ss_pred             eeeccc
Confidence            999873

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.056  Score=45.69  Aligned_cols=151  Identities=16%  Similarity=0.175  Sum_probs=77.8

Q ss_pred             cEEE-EEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEec---CC-chhhhhhhhhhhhhhccCCcccEE-EeCC-----
Q 022227            6 VRVL-VTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI---PP-AAEALNGVKMELVDAAFPLLKGVV-ATTD-----   74 (300)
Q Consensus         6 ~kV~-IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~---~~-~~~~l~g~~~dl~~~~~~~~~~v~-~~~~-----   74 (300)
                      +||+ ||||++-||..++..|++.|.       .+++++.   +. ..+++.....++...    ..++. +..|     
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga-------~v~~v~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~Dv~~~~   70 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPS-------QSFKVYATLRDLKTQGRLWEAARALACP----PGSLETLQLDVRDSK   70 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT-------CCEEEEEEESCGGGTHHHHHHHHHTTCC----TTSEEEEECCTTCHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCC-------CeEEEEEecCChhhhHHHHHHHHHHhcc----CCceEEEeccccchH
Confidence            5765 679999999999999998774       2333332   21 111121111111110    00111 1111     


Q ss_pred             -hhh---hc--CCCcEEEEeCCCCCCCC---CcH---HHHHHhhH----HHHHHHHHHHhhhcCCCeEEEEecCchhhHH
Q 022227           75 -AVE---AC--TGVNIAVMVGGFPRKEG---MER---KDVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNA  138 (300)
Q Consensus        75 -~~~---a~--~~aDvVi~~ag~~~~~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~  138 (300)
                       ..+   .+  ...|++|..||......   .+.   ...+..|+    ...+.+.+.+.+..  ...+|++|+-...  
T Consensus        71 ~~~~~~~~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~--~G~Iv~isS~~g~--  146 (285)
T d1jtva_          71 SVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG--SGRVLVTGSVGGL--  146 (285)
T ss_dssp             HHHHHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEEGGGT--
T ss_pred             hhhhhhhhccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC--CCceEEEechhhc--
Confidence             111   11  35799999988754321   122   23455564    45666677777764  3467777654331  


Q ss_pred             HHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeE
Q 022227          139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK  180 (300)
Q Consensus       139 ~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~  180 (300)
                             .+.|..-.|+.++---..+.+.+|.++.  +.+|+
T Consensus       147 -------~~~~~~~~Y~asKaal~~l~~~la~El~--~~gIr  179 (285)
T d1jtva_         147 -------MGLPFNDVYCASKFALEGLCESLAVLLL--PFGVH  179 (285)
T ss_dssp             -------SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred             -------CCCCCchHHHHHHHHHHHHHHHHHHHhh--ccCcE
Confidence                   1233223455565556677777777764  34454

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.72  E-value=0.0069  Score=49.37  Aligned_cols=34  Identities=32%  Similarity=0.466  Sum_probs=29.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      +.+||+||| +|..|.+.|+.|.++|.       +|.|+|.+
T Consensus         5 ~~~kVvVIG-aGiaGl~~A~~L~~~G~-------~V~vier~   38 (268)
T d1c0pa1           5 SQKRVVVLG-SGVIGLSSALILARKGY-------SVHILARD   38 (268)
T ss_dssp             CSCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESS
T ss_pred             CCCcEEEEC-ccHHHHHHHHHHHHCCC-------CEEEEeCC
Confidence            457999999 79999999999999875       79999874

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.70  E-value=0.022  Score=44.49  Aligned_cols=65  Identities=17%  Similarity=0.245  Sum_probs=41.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEE-EEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVIL-HMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l-~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      |+++||+|+| +|++|+..+..|.+..      .+++ .++|.++  +....             ..+....+..+...+
T Consensus         1 M~kirvgiiG-~G~ig~~~~~~l~~~~------~~elvav~~~~~--~~~~~-------------~~~~~~~~~~~~~~~   58 (170)
T d1f06a1           1 MTNIRVAIVG-YGNLGRSVEKLIAKQP------DMDLVGIFSRRA--TLDTK-------------TPVFDVADVDKHADD   58 (170)
T ss_dssp             CCCEEEEEEC-CSHHHHHHHHHHTTCS------SEEEEEEEESSS--CCSSS-------------SCEEEGGGGGGTTTT
T ss_pred             CCcceEEEEC-ChHHHHHHHHHHHhCC------CcEEEEEEeccc--ccccc-------------cccccchhhhhhccc
Confidence            4568999999 7999999888876532      2344 4566643  21110             112233355666789


Q ss_pred             CcEEEEeC
Q 022227           82 VNIAVMVG   89 (300)
Q Consensus        82 aDvVi~~a   89 (300)
                      .|+|+++.
T Consensus        59 ~D~Vvi~t   66 (170)
T d1f06a1          59 VDVLFLCM   66 (170)
T ss_dssp             CSEEEECS
T ss_pred             cceEEEeC
Confidence            99999874

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.68  E-value=0.021  Score=47.09  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=29.1

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      -|.||||++-||..++..|++.|.       +|++.|+++
T Consensus         3 VvlITGas~GIG~aiA~~la~~Ga-------~V~~~~~~~   35 (257)
T d1fjha_           3 IIVISGCATGIGAATRKVLEAAGH-------QIVGIDIRD   35 (257)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCh
Confidence            468999999999999999999886       799999864

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.67  E-value=0.013  Score=49.58  Aligned_cols=38  Identities=16%  Similarity=0.179  Sum_probs=31.3

Q ss_pred             CCCCCcEEEEEcCCC--hHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            1 MAKEPVRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         1 m~~~~~kV~IiGAaG--~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      |+.+.+++.||||+|  -||..++..|++.|.       +|++.+.+
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga-------~Vvi~~~~   43 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGA-------EILVGTWV   43 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTC-------EEEEEEEH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCC-------EEEEEeCc
Confidence            344678999999877  699999999999885       78888764

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.021  Score=44.48  Aligned_cols=68  Identities=26%  Similarity=0.286  Sum_probs=48.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..++|+|+| .|.+|..+|..+...|.       .+..+|+++. ..+++. +|-..          + ...++++..+|
T Consensus        23 ~Gk~v~V~G-yG~iG~g~A~~~rg~G~-------~V~v~e~dp~-~al~A~-~dG~~----------v-~~~~~a~~~ad   81 (163)
T d1li4a1          23 AGKVAVVAG-YGDVGKGCAQALRGFGA-------RVIITEIDPI-NALQAA-MEGYE----------V-TTMDEACQEGN   81 (163)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCHH-HHHHHH-HTTCE----------E-CCHHHHTTTCS
T ss_pred             cCCEEEEec-cccccHHHHHHHHhCCC-------eeEeeecccc-hhHHhh-cCceE----------e-eehhhhhhhcc
Confidence            356899999 89999999999987764       7999999752 233322 22111          1 25789999999


Q ss_pred             EEEEeCCCC
Q 022227           84 IAVMVGGFP   92 (300)
Q Consensus        84 vVi~~ag~~   92 (300)
                      +||.+-|..
T Consensus        82 ivvtaTGn~   90 (163)
T d1li4a1          82 IFVTTTGCI   90 (163)
T ss_dssp             EEEECSSCS
T ss_pred             EEEecCCCc
Confidence            998886643

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.64  E-value=0.18  Score=41.56  Aligned_cols=152  Identities=15%  Similarity=0.125  Sum_probs=79.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHh---cccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEE-EeCC---h---
Q 022227            6 VRVLVTGAAGQIGYALVPMIAR---GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVV-ATTD---A---   75 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~---~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~-~~~~---~---   75 (300)
                      +.+.||||++-||..++..|++   .|.       .|++.|++  +++++..+.++.... +. .++. +..|   .   
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~-------~Vv~~~r~--~~~l~~~~~~l~~~~-~~-~~~~~~~~Dvs~~~~v   75 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGS-------VMLVSARS--ESMLRQLKEELGAQQ-PD-LKVVLAAADLGTEAGV   75 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTC-------EEEEEESC--HHHHHHHHHHHHHHC-TT-SEEEEEECCTTSHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCC-------EEEEEECC--HHHHHHHHHHHHhhc-CC-ceEEEEEccCCCHHHH
Confidence            3455679999999999999985   343       79999986  466665555554321 10 0110 1111   1   


Q ss_pred             hhh---c--------CCCcEEEEeCCCCCC--C----CCcH---HHHHHhhHHHHHHHHHHHhhhcC----CCeEEEEec
Q 022227           76 VEA---C--------TGVNIAVMVGGFPRK--E----GMER---KDVMSKNVSIYKAQASALEQHAA----PNCKVLVVA  131 (300)
Q Consensus        76 ~~a---~--------~~aDvVi~~ag~~~~--~----g~~r---~dl~~~N~~i~~~i~~~i~~~~~----~~~~viv~s  131 (300)
                      .+.   +        -+.|++|..||....  .    ..+.   ...+..|+.....+.+.+.++-.    +...+|+++
T Consensus        76 ~~l~~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~is  155 (259)
T d1oaaa_          76 QRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNIS  155 (259)
T ss_dssp             HHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEEC
T ss_pred             HHHHHHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccc
Confidence            111   1        134677777775321  1    1222   23466776665555555544321    124567666


Q ss_pred             CchhhHHHHHHHHCCCCCCCcEEeeehhhHHHHHHHHHHHcCCCCCCeEE
Q 022227          132 NPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN  181 (300)
Q Consensus       132 NP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~~~~la~~l~v~~~~V~~  181 (300)
                      .-...         .+.|..-.|+.++---..+.+.+|.+    +..|+.
T Consensus       156 S~~~~---------~~~~~~~~Y~asKaal~~lt~~la~e----~~gIrV  192 (259)
T d1oaaa_         156 SLCAL---------QPYKGWGLYCAGKAARDMLYQVLAAE----EPSVRV  192 (259)
T ss_dssp             CGGGT---------SCCTTCHHHHHHHHHHHHHHHHHHHH----CTTEEE
T ss_pred             ccccc---------CCCccchHHHHHHHHHHHHHHHHHhC----CCCCEE
Confidence            53321         12232223444444445566667765    356763

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=95.62  E-value=0.05  Score=42.61  Aligned_cols=70  Identities=9%  Similarity=0.019  Sum_probs=40.7

Q ss_pred             CCCcEEEEEcCCChHHHH-HHHHHHhcccCCCCCCeEEE-EEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            3 KEPVRVLVTGAAGQIGYA-LVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~-la~~L~~~~~~~~~~~~~l~-L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      |+++||+|+| +|.+|.. .+..+....     ...+++ ++|.++  ++++....++.        .....++.++.++
T Consensus         1 MkkirigiIG-~G~~g~~~h~~~l~~~~-----~~~~i~~v~d~~~--~~~~~~~~~~~--------~~~~~~~~~ell~   64 (181)
T d1zh8a1           1 LRKIRLGIVG-CGIAARELHLPALKNLS-----HLFEITAVTSRTR--SHAEEFAKMVG--------NPAVFDSYEELLE   64 (181)
T ss_dssp             CCCEEEEEEC-CSHHHHHTHHHHHHTTT-----TTEEEEEEECSSH--HHHHHHHHHHS--------SCEEESCHHHHHH
T ss_pred             CCCcEEEEEc-CCHHHHHHHHHHHHhCC-----CCeEEEEEEeccH--hhhhhhhcccc--------ccceeeeeecccc
Confidence            4568999999 7999986 455555421     112444 778753  44432222211        1123457777665


Q ss_pred             --CCcEEEEe
Q 022227           81 --GVNIAVMV   88 (300)
Q Consensus        81 --~aDvVi~~   88 (300)
                        +.|+|+++
T Consensus        65 ~~~id~v~I~   74 (181)
T d1zh8a1          65 SGLVDAVDLT   74 (181)
T ss_dssp             SSCCSEEEEC
T ss_pred             ccccceeecc
Confidence              57888886

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.55  E-value=0.011  Score=45.68  Aligned_cols=71  Identities=21%  Similarity=0.309  Sum_probs=42.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA   85 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvV   85 (300)
                      -||+|+||+|++|.-+...|..... .   ..++.++...+    -.|...  ...    .............+.++|++
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~f-p---~~~l~~~~s~~----s~G~~~--~~~----~~~~~~~~~~~~~~~~~d~~   67 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTL-P---IDKIRYLASAR----SAGKSL--KFK----DQDITIEETTETAFEGVDIA   67 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCS-C---EEEEEEEECGG----GTTCEE--EET----TEEEEEEECCTTTTTTCSEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCC-C---ceEEEEecccc----cccccc--ccc----CCcccccccchhhhhhhhhh
Confidence            4899999999999999987766531 1   12677775432    122211  111    11122222345668899999


Q ss_pred             EEeCC
Q 022227           86 VMVGG   90 (300)
Q Consensus        86 i~~ag   90 (300)
                      +++++
T Consensus        68 f~~~~   72 (154)
T d2gz1a1          68 LFSAG   72 (154)
T ss_dssp             EECSC
T ss_pred             hhccC
Confidence            99863

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=95.53  E-value=0.0018  Score=49.91  Aligned_cols=62  Identities=6%  Similarity=0.011  Sum_probs=34.8

Q ss_pred             EEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcEEEE
Q 022227            8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVM   87 (300)
Q Consensus         8 V~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDvVi~   87 (300)
                      |.+|| +|.+|++++..|...+.       ...+++++  .++++..+.....          ...+..++++.+|+||+
T Consensus         2 IgfIG-~G~mg~~l~~~L~~~~~-------~~~v~~R~--~~~~~~l~~~~~~----------~~~~~~~~~~~~DiVil   61 (153)
T d2i76a2           2 LNFVG-TGTLTRFFLECLKDRYE-------IGYILSRS--IDRARNLAEVYGG----------KAATLEKHPELNGVVFV   61 (153)
T ss_dssp             CEEES-CCHHHHHHHHTTC-----------CCCEECSS--HHHHHHHHHHTCC----------CCCSSCCCCC---CEEE
T ss_pred             EEEEe-CcHHHHHHHHHHHhCCC-------EEEEEeCC--hhhhcchhhcccc----------cccchhhhhccCcEEEE
Confidence            67999 89999999987754321       23467764  3555433222111          01245678899999998


Q ss_pred             eC
Q 022227           88 VG   89 (300)
Q Consensus        88 ~a   89 (300)
                      +.
T Consensus        62 ~v   63 (153)
T d2i76a2          62 IV   63 (153)
T ss_dssp             CS
T ss_pred             ec
Confidence            84

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=95.47  E-value=0.017  Score=46.13  Aligned_cols=66  Identities=23%  Similarity=0.243  Sum_probs=45.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..++|+|+| .|.||..++..|..-+.       ++..+|.....+.   ...+.         .+....++++.+++||
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~~fg~-------~v~~~d~~~~~~~---~~~~~---------~~~~~~~l~~~l~~sD  102 (188)
T d2naca1          43 EAMHVGTVA-AGRIGLAVLRRLAPFDV-------HLHYTDRHRLPES---VEKEL---------NLTWHATREDMYPVCD  102 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTC-------EEEEECSSCCCHH---HHHHH---------TCEECSSHHHHGGGCS
T ss_pred             cccceeecc-ccccchhhhhhhhccCc-------eEEEEeecccccc---ccccc---------cccccCCHHHHHHhcc
Confidence            357999999 79999999988876443       7899987532111   10000         1223447889999999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +|++..
T Consensus       103 ~v~~~~  108 (188)
T d2naca1         103 VVTLNC  108 (188)
T ss_dssp             EEEECS
T ss_pred             chhhcc
Confidence            998875

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=95.47  E-value=0.055  Score=44.67  Aligned_cols=120  Identities=13%  Similarity=0.070  Sum_probs=66.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC-chhhhhhhhhhhhhhccC---CcccEEEeCC---hhh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-AAEALNGVKMELVDAAFP---LLKGVVATTD---AVE   77 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~-~~~~l~g~~~dl~~~~~~---~~~~v~~~~~---~~~   77 (300)
                      ...+.||||+|.||..++..|++.|.-      .|+|+.++. +.+.++....++......   ...++.-..+   ..+
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~------~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~   82 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAP------HLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLG   82 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCS------EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCC------EEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhc
Confidence            357999999999999999999988741      578876532 112222222233221100   0000000000   111


Q ss_pred             hcC---CCcEEEEeCCCCCCCC---CcHH---HHHHhhHHHHHHHHHHHhhhcCCCeEEEEecC
Q 022227           78 ACT---GVNIAVMVGGFPRKEG---MERK---DVMSKNVSIYKAQASALEQHAAPNCKVLVVAN  132 (300)
Q Consensus        78 a~~---~aDvVi~~ag~~~~~g---~~r~---dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sN  132 (300)
                      .+.   ..|.||+.+|......   ++..   ..+..|+.....+.+.+....  ...+|++|+
T Consensus        83 ~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~--~~~iv~~SS  144 (259)
T d2fr1a1          83 GIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELD--LTAFVLFSS  144 (259)
T ss_dssp             TSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSC--CSEEEEEEE
T ss_pred             cccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccC--CceEeeecc
Confidence            122   4788999998764322   2222   235678888777877776653  235666664

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=95.43  E-value=0.013  Score=47.10  Aligned_cols=65  Identities=11%  Similarity=0.061  Sum_probs=45.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .++|+|+| .|.||+.++..|..-|+       ++..+|.....+.  ....           .+....++++.++.||+
T Consensus        49 gktvgIiG-~G~IG~~va~~l~~fg~-------~v~~~d~~~~~~~--~~~~-----------~~~~~~~l~~ll~~sD~  107 (193)
T d1mx3a1          49 GETLGIIG-LGRVGQAVALRAKAFGF-------NVLFYDPYLSDGV--ERAL-----------GLQRVSTLQDLLFHSDC  107 (193)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECTTSCTTH--HHHH-----------TCEECSSHHHHHHHCSE
T ss_pred             CceEEEec-cccccccceeeeecccc-------ceeeccCcccccc--hhhh-----------ccccccchhhccccCCE
Confidence            46999999 89999999998876553       7889997532110  0000           11223478888999999


Q ss_pred             EEEeCC
Q 022227           85 AVMVGG   90 (300)
Q Consensus        85 Vi~~ag   90 (300)
                      |++..-
T Consensus       108 i~~~~p  113 (193)
T d1mx3a1         108 VTLHCG  113 (193)
T ss_dssp             EEECCC
T ss_pred             EEEeec
Confidence            999753

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.42  E-value=0.037  Score=40.67  Aligned_cols=35  Identities=23%  Similarity=0.470  Sum_probs=29.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      ++.+|+|+| +|++|.-+|..|.+.|.       ++.|++..+
T Consensus        29 ~~~~vvIIG-gG~iG~E~A~~l~~~g~-------~Vtli~~~~   63 (121)
T d1d7ya2          29 PQSRLLIVG-GGVIGLELAATARTAGV-------HVSLVETQP   63 (121)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESSS
T ss_pred             cCCeEEEEC-cchhHHHHHHHhhcccc-------eEEEEeecc
Confidence            357999999 79999999999998764       899998753

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=95.39  E-value=0.1  Score=43.27  Aligned_cols=43  Identities=23%  Similarity=0.251  Sum_probs=31.8

Q ss_pred             EEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhh
Q 022227            8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL   58 (300)
Q Consensus         8 V~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl   58 (300)
                      +.||||++-||..++..|++.|.       .|++.|.+. ++.++....++
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga-------~V~i~~~~~-~~~~~~~~~~l   47 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGY-------AVCLHYHRS-AAEANALSATL   47 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCC-------EEEEEeCCC-HHHHHHHHHHH
Confidence            46789999999999999999885       788877653 34444444444

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=95.31  E-value=0.033  Score=48.60  Aligned_cols=74  Identities=19%  Similarity=0.181  Sum_probs=50.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ....++|+| +|..+..-+..+...  ++.   .+++++|+++  ++.+..+.++.+   .....+....+.++++++||
T Consensus       127 da~~l~iiG-~G~QA~~~~~a~~~v--~~i---~~V~v~~r~~--~~~~~~~~~l~~---~~g~~v~~~~s~~eav~~AD  195 (340)
T d1x7da_         127 NARKMALIG-NGAQSEFQALAFHKH--LGI---EEIVAYDTDP--LATAKLIANLKE---YSGLTIRRASSVAEAVKGVD  195 (340)
T ss_dssp             TCCEEEEEC-CSTTHHHHHHHHHHH--SCC---CEEEEECSSH--HHHHHHHHHHTT---CTTCEEEECSSHHHHHTTCS
T ss_pred             CCceEEEEc-ccHHHHHHHHHHhhh--cce---eeeEEEecCh--HHHHHHHHhhhh---ccCCCceecCCHHHHHhcCC
Confidence            457899999 799888777665532  221   1899999963  444444444432   12345677788999999999


Q ss_pred             EEEEe
Q 022227           84 IAVMV   88 (300)
Q Consensus        84 vVi~~   88 (300)
                      +|+.+
T Consensus       196 Ii~t~  200 (340)
T d1x7da_         196 IITTV  200 (340)
T ss_dssp             EEEEC
T ss_pred             ceeec
Confidence            98874

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.27  E-value=0.035  Score=44.08  Aligned_cols=77  Identities=17%  Similarity=0.067  Sum_probs=47.2

Q ss_pred             CCcEEEEEc-CCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTG-AAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiG-AaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      +..||+++| +...|..+++..+..-|+       +++++-.+.- ..-+....++..........++.+.+.+++++++
T Consensus         4 ~~lkia~vGD~~nnV~~Sli~~~~~~G~-------~l~l~~P~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~a   75 (185)
T d1dxha2           4 HDISYAYLGDARNNMGNSLLLIGAKLGM-------DVRIAAPKAL-WPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGV   75 (185)
T ss_dssp             GGCEEEEESCCSSHHHHHHHHHHHHTTC-------EEEEECCGGG-SCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTC
T ss_pred             CCCEEEEEcCCcchHHHHHHHHHHHcCC-------EEEEEccHHH-HhhhHHHHHHHHHhhccCCeEEEEeChhhccccc
Confidence            357999999 323788888877776553       7888865320 0001111111111111235677888999999999


Q ss_pred             cEEEEe
Q 022227           83 NIAVMV   88 (300)
Q Consensus        83 DvVi~~   88 (300)
                      |+|...
T Consensus        76 DvVyt~   81 (185)
T d1dxha2          76 DFVHTD   81 (185)
T ss_dssp             SEEEEC
T ss_pred             cEEEee
Confidence            998775

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.26  E-value=0.018  Score=42.25  Aligned_cols=34  Identities=21%  Similarity=0.255  Sum_probs=29.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      .+.||+|+| +|++|.-+|..|...|.       +++|++..
T Consensus        21 ~p~~v~IiG-gG~iG~E~A~~l~~~g~-------~Vtlv~~~   54 (117)
T d1onfa2          21 ESKKIGIVG-SGYIAVELINVIKRLGI-------DSYIFARG   54 (117)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECSS
T ss_pred             CCCEEEEEC-CchHHHHHHHHHHhccc-------cceeeehh
Confidence            468999999 69999999999987664       89999874

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.25  E-value=0.096  Score=40.87  Aligned_cols=69  Identities=9%  Similarity=0.030  Sum_probs=42.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEE-EEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc--CCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC--TGV   82 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~-L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~--~~a   82 (300)
                      +||+||| +|.+|...+..|...+-      .+++ ++|.+  .++++..+...     .........++.++.+  .+.
T Consensus         2 iki~iIG-~G~~g~~~~~~l~~~~~------~~i~ai~d~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~ll~~~~i   67 (184)
T d1ydwa1           2 IRIGVMG-CADIARKVSRAIHLAPN------ATISGVASRS--LEKAKAFATAN-----NYPESTKIHGSYESLLEDPEI   67 (184)
T ss_dssp             EEEEEES-CCTTHHHHHHHHHHCTT------EEEEEEECSS--HHHHHHHHHHT-----TCCTTCEEESSHHHHHHCTTC
T ss_pred             eEEEEEc-CCHHHHHHHHHHHhCCC------CEEEEEEeCC--ccccccchhcc-----ccccceeecCcHHHhhhcccc
Confidence            6999999 79999998888765421      2554 66775  34443222111     1112333456776665  467


Q ss_pred             cEEEEe
Q 022227           83 NIAVMV   88 (300)
Q Consensus        83 DvVi~~   88 (300)
                      |+|+++
T Consensus        68 D~v~I~   73 (184)
T d1ydwa1          68 DALYVP   73 (184)
T ss_dssp             CEEEEC
T ss_pred             ceeeec
Confidence            999886

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.20  E-value=0.017  Score=45.91  Aligned_cols=60  Identities=22%  Similarity=0.153  Sum_probs=43.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..++|+|+| .|.||..++..+..-|.       ++..+|..+.+.       +.   .        ...++++.+++||
T Consensus        41 ~gk~vgIiG-~G~IG~~va~~l~~~g~-------~v~~~d~~~~~~-------~~---~--------~~~~l~ell~~sD   94 (181)
T d1qp8a1          41 QGEKVAVLG-LGEIGTRVGKILAALGA-------QVRGFSRTPKEG-------PW---R--------FTNSLEEALREAR   94 (181)
T ss_dssp             TTCEEEEES-CSTHHHHHHHHHHHTTC-------EEEEECSSCCCS-------SS---C--------CBSCSHHHHTTCS
T ss_pred             cCceEEEec-cccccccceeeeecccc-------cccccccccccc-------ce---e--------eeechhhhhhccc
Confidence            346899999 79999999988876554       788998754210       00   0        1236789999999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +|++..
T Consensus        95 iv~~~~  100 (181)
T d1qp8a1          95 AAVCAL  100 (181)
T ss_dssp             EEEECC
T ss_pred             hhhccc
Confidence            999864

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.18  E-value=0.046  Score=43.30  Aligned_cols=35  Identities=29%  Similarity=0.414  Sum_probs=28.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      +|-||+|+| +|.+|.+-+......|-       .+..+|++.
T Consensus        28 ~pa~VvViG-aGvaG~~Aa~~A~~lGA-------~V~v~D~~~   62 (183)
T d1l7da1          28 PPARVLVFG-VGVAGLQAIATAKRLGA-------VVMATDVRA   62 (183)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCS
T ss_pred             CCcEEEEEc-CcHHHHHHHHHHHHcCC-------EEEEEeccH
Confidence            467999999 79999988877766553       799999975

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.16  E-value=0.039  Score=43.82  Aligned_cols=64  Identities=13%  Similarity=0.049  Sum_probs=45.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..++|+|+| .|.||..++..+..-++       ++..+|......  .      ..        .....++++.++.||
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~~fg~-------~v~~~d~~~~~~--~------~~--------~~~~~~l~ell~~sD   98 (188)
T d1sc6a1          43 RGKKLGIIG-YGHIGTQLGILAESLGM-------YVYFYDIENKLP--L------GN--------ATQVQHLSDLLNMSD   98 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSCCCC--C------TT--------CEECSCHHHHHHHCS
T ss_pred             cceEEEEee-cccchhhhhhhcccccc-------eEeeccccccch--h------hh--------hhhhhhHHHHHhhcc
Confidence            347999999 89999999998876553       789998753111  0      00        011236788899999


Q ss_pred             EEEEeCCC
Q 022227           84 IAVMVGGF   91 (300)
Q Consensus        84 vVi~~ag~   91 (300)
                      +|++..-.
T Consensus        99 ii~i~~pl  106 (188)
T d1sc6a1          99 VVSLHVPE  106 (188)
T ss_dssp             EEEECCCS
T ss_pred             ceeecccC
Confidence            99997643

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.14  E-value=0.03  Score=43.84  Aligned_cols=71  Identities=8%  Similarity=0.059  Sum_probs=47.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +.++|.|+| +|-.+.++++.|.+++  .     ++.+++++  .++++..+..+....     ++.........+.++|
T Consensus        17 ~~k~vlIlG-aGGaarai~~aL~~~~--~-----~i~I~nR~--~~~a~~l~~~~~~~~-----~~~~~~~~~~~~~~~d   81 (171)
T d1p77a1          17 PNQHVLILG-AGGATKGVLLPLLQAQ--Q-----NIVLANRT--FSKTKELAERFQPYG-----NIQAVSMDSIPLQTYD   81 (171)
T ss_dssp             TTCEEEEEC-CSHHHHTTHHHHHHTT--C-----EEEEEESS--HHHHHHHHHHHGGGS-----CEEEEEGGGCCCSCCS
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHcccC--c-----eeeeccch--HHHHHHHHHHHhhcc-----ccchhhhccccccccc
Confidence            456999999 7999999999998643  1     79999886  456665544443221     2222222234578999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +||.+.
T Consensus        82 iiIN~t   87 (171)
T d1p77a1          82 LVINAT   87 (171)
T ss_dssp             EEEECC
T ss_pred             eeeecc
Confidence            999984

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.10  E-value=0.014  Score=47.77  Aligned_cols=35  Identities=14%  Similarity=0.191  Sum_probs=30.6

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      .+..||+||| +|..|..+|..|.+.|+       +++++|..
T Consensus         2 ~~~~kV~IiG-aG~aGl~~A~~L~~~G~-------~v~v~Er~   36 (265)
T d2voua1           2 PTTDRIAVVG-GSISGLTAALMLRDAGV-------DVDVYERS   36 (265)
T ss_dssp             CCCSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSS
T ss_pred             CCCCcEEEEC-cCHHHHHHHHHHHHCCC-------CEEEEeCC
Confidence            4568999999 79999999999998875       89999874

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.07  E-value=0.019  Score=46.19  Aligned_cols=62  Identities=15%  Similarity=0.113  Sum_probs=43.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .++|+|+| .|.||+.++..|..-|+       ++..+|...+..    ...   +..        ...++.+.++.||+
T Consensus        43 gk~vgIiG-~G~IG~~va~~l~~fg~-------~V~~~d~~~~~~----~~~---~~~--------~~~~l~~~l~~sDi   99 (197)
T d1j4aa1          43 DQVVGVVG-TGHIGQVFMQIMEGFGA-------KVITYDIFRNPE----LEK---KGY--------YVDSLDDLYKQADV   99 (197)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSCCHH----HHH---TTC--------BCSCHHHHHHHCSE
T ss_pred             CCeEEEec-ccccchhHHHhHhhhcc-------cccccCcccccc----ccc---cee--------eecccccccccccc
Confidence            47999999 89999999999876443       788899753211    101   111        12367888999999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      |++..
T Consensus       100 i~~~~  104 (197)
T d1j4aa1         100 ISLHV  104 (197)
T ss_dssp             EEECS
T ss_pred             ccccC
Confidence            99875

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.05  E-value=0.031  Score=43.82  Aligned_cols=74  Identities=15%  Similarity=0.141  Sum_probs=49.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCC-cccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~-~~~v~~~~~~~~a~~~a   82 (300)
                      +.++|+|+| +|.++.++++.|...+        +|.+++++  .++++..+.++....... ...+.. .+....+.++
T Consensus        17 ~~k~vlIlG-aGG~arai~~aL~~~~--------~i~I~nR~--~~ka~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   84 (177)
T d1nvta1          17 KDKNIVIYG-AGGAARAVAFELAKDN--------NIIIANRT--VEKAEALAKEIAEKLNKKFGEEVKF-SGLDVDLDGV   84 (177)
T ss_dssp             CSCEEEEEC-CSHHHHHHHHHHTSSS--------EEEEECSS--HHHHHHHHHHHHHHHTCCHHHHEEE-ECTTCCCTTC
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHcccc--------ceeeehhh--hhHHHHHHHHHHHhhchhhhhhhhh-hhhhhccchh
Confidence            456899999 7999999998885432        78999885  466665555565432221 122222 2455667889


Q ss_pred             cEEEEeC
Q 022227           83 NIAVMVG   89 (300)
Q Consensus        83 DvVi~~a   89 (300)
                      |++|.+-
T Consensus        85 dliIn~t   91 (177)
T d1nvta1          85 DIIINAT   91 (177)
T ss_dssp             CEEEECS
T ss_pred             hhhccCC
Confidence            9999874

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=95.02  E-value=0.045  Score=42.13  Aligned_cols=66  Identities=11%  Similarity=0.080  Sum_probs=39.5

Q ss_pred             CcEEEEEcCCChHHHH-HHHHHHhcccCCCCCCeE-EEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            5 PVRVLVTGAAGQIGYA-LVPMIARGVMLGTDQPVI-LHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~-la~~L~~~~~~~~~~~~~-l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      .+||+|+| +|.+|.. .+..+....      .++ +.++|.++  ++++...-++   .      +...++..+.+++.
T Consensus         1 Kiri~iIG-~G~~g~~~~~~~l~~~~------~~~i~~v~d~~~--~~~~~~~~~~---~------~~~~~~~~~l~~~~   62 (164)
T d1tlta1           1 KLRIGVVG-LGGIAQKAWLPVLAAAS------DWTLQGAWSPTR--AKALPICESW---R------IPYADSLSSLAASC   62 (164)
T ss_dssp             CEEEEEEC-CSTHHHHTHHHHHHSCS------SEEEEEEECSSC--TTHHHHHHHH---T------CCBCSSHHHHHTTC
T ss_pred             CCEEEEEc-CCHHHHHHHHHHHHhCC------CcEEEEEEechh--Hhhhhhhhcc---c------ccccccchhhhhhc
Confidence            36999999 7999975 455555422      124 46778764  3333222211   1      11234566667899


Q ss_pred             cEEEEe
Q 022227           83 NIAVMV   88 (300)
Q Consensus        83 DvVi~~   88 (300)
                      |+|+++
T Consensus        63 D~V~I~   68 (164)
T d1tlta1          63 DAVFVH   68 (164)
T ss_dssp             SEEEEC
T ss_pred             cccccc
Confidence            999887

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.01  E-value=0.013  Score=49.26  Aligned_cols=34  Identities=24%  Similarity=0.415  Sum_probs=30.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      +++||+||| +|..|.+.|..|.+.|+       +|.|+|..
T Consensus        29 ~pkkV~IIG-aG~aGLsaA~~L~~~G~-------~V~vlE~~   62 (370)
T d2iida1          29 NPKHVVIVG-AGMAGLSAAYVLAGAGH-------QVTVLEAS   62 (370)
T ss_dssp             SCCEEEEEC-CBHHHHHHHHHHHHHTC-------EEEEECSS
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHCCC-------CEEEEeCC
Confidence            568999999 79999999999999885       79999864

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=94.68  E-value=0.03  Score=44.79  Aligned_cols=65  Identities=15%  Similarity=0.031  Sum_probs=44.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .++|.|+| .|.||+.++..+..-|+       ++..+|......  .   .+....       .....++.+.++.||+
T Consensus        47 g~tvgIiG-~G~IG~~va~~l~~fg~-------~v~~~d~~~~~~--~---~~~~~~-------~~~~~~l~~ll~~sD~  106 (191)
T d1gdha1          47 NKTLGIYG-FGSIGQALAKRAQGFDM-------DIDYFDTHRASS--S---DEASYQ-------ATFHDSLDSLLSVSQF  106 (191)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECSSCCCH--H---HHHHHT-------CEECSSHHHHHHHCSE
T ss_pred             ccceEEee-cccchHHHHHHHHhhcc-------cccccccccccc--c---hhhccc-------ccccCCHHHHHhhCCe
Confidence            47999999 79999999988775443       788999753211  1   111111       1123467889999999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      |++..
T Consensus       107 v~l~~  111 (191)
T d1gdha1         107 FSLNA  111 (191)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            98875

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=94.53  E-value=0.038  Score=42.70  Aligned_cols=37  Identities=24%  Similarity=0.456  Sum_probs=24.1

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHh-cccCCCCCCeEEEEE-ecC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHML-DIP   45 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~-~~~~~~~~~~~l~L~-D~~   45 (300)
                      |+ +++||+|+| +|.+|..+...+++ ...      .|++++ |++
T Consensus         1 M~-kkirvaIIG-aG~ig~~~~~~~l~~~~~------~el~avas~~   39 (157)
T d1nvmb1           1 MN-QKLKVAIIG-SGNIGTDLMIKVLRNAKY------LEMGAMVGID   39 (157)
T ss_dssp             CC-SCEEEEEEC-CSHHHHHHHHHHHHHCSS------EEEEEEECSC
T ss_pred             CC-CCcEEEEEc-CcHHHHHHHHHHHhhCCc------ceEEEEEecc
Confidence            65 458999999 89999865444443 222      366555 665

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=94.50  E-value=0.12  Score=40.49  Aligned_cols=76  Identities=12%  Similarity=0.110  Sum_probs=46.3

Q ss_pred             CCcEEEEEcCCC--hHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            4 EPVRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiGAaG--~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      +..||+++| -|  .|..+++..+..-|+       +++++-.++-. .-+.....+..........+..+.+..+++++
T Consensus         4 ~~l~i~~vG-D~~nnv~~Sli~~~~~~g~-------~l~~~~P~~~~-~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~   74 (183)
T d1duvg2           4 NEMTLVYAG-DARNNMGNSMLEAAALTGL-------DLRLVAPQACW-PEAALVTECRALAQQNGGNITLTEDVAKGVEG   74 (183)
T ss_dssp             GGCEEEEES-CTTSHHHHHHHHHHHHHCC-------EEEEECCGGGC-CCHHHHHHHHHHHHHTTCEEEEESCHHHHHTT
T ss_pred             CCCEEEEEc-CCccHHHHHHHHHHHHcCC-------EEEEEechHhh-hhHHHHHHHHHHHHhcCCceEEEechhhcccc
Confidence            357999999 34  577777776665553       78888653210 00111111111111123567788899999999


Q ss_pred             CcEEEEe
Q 022227           82 VNIAVMV   88 (300)
Q Consensus        82 aDvVi~~   88 (300)
                      +|+|...
T Consensus        75 aDvvyt~   81 (183)
T d1duvg2          75 ADFIYTD   81 (183)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEE
Confidence            9998875

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.46  E-value=0.061  Score=42.14  Aligned_cols=80  Identities=20%  Similarity=0.163  Sum_probs=44.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEE-EEecCCchhhhhhhhhh--hhhhccC-----CcccEEEeCChh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKME--LVDAAFP-----LLKGVVATTDAV   76 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~-L~D~~~~~~~l~g~~~d--l~~~~~~-----~~~~v~~~~~~~   76 (300)
                      ++||+|.| .|.||..++..|..++      .++++ +-|..++.........+  +.+....     ....+....+..
T Consensus         2 ~irIaING-fGRIGR~v~Ral~~~~------dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (172)
T d2czca2           2 KVKVGVNG-YGTIGKRVAYAVTKQD------DMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLN   74 (172)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCT------TEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHH
T ss_pred             cEEEEEEC-CCHHHHHHHHHHHhCC------CceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhh
Confidence            46999999 8999999988887543      23554 44654322111111111  1000000     011233344566


Q ss_pred             hhcCCCcEEEEeCCC
Q 022227           77 EACTGVNIAVMVGGF   91 (300)
Q Consensus        77 ~a~~~aDvVi~~ag~   91 (300)
                      +.++++|+||-+-|.
T Consensus        75 ~~~~~vDvViEcTG~   89 (172)
T d2czca2          75 DLLEKVDIIVDATPG   89 (172)
T ss_dssp             HHHTTCSEEEECCST
T ss_pred             hhhccCCEEEECCCC
Confidence            677899999998664

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.15  Score=39.25  Aligned_cols=39  Identities=26%  Similarity=0.302  Sum_probs=29.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN   52 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~   52 (300)
                      ..+|+|+| +|.+|...+..+...|.-      .++..|.++  ++++
T Consensus        27 gd~VlI~G-~G~iG~~~~~~a~~~G~~------~Vi~~d~~~--~rl~   65 (171)
T d1pl8a2          27 GHKVLVCG-AGPIGMVTLLVAKAMGAA------QVVVTDLSA--TRLS   65 (171)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHTTCS------EEEEEESCH--HHHH
T ss_pred             CCEEEEEC-CCccHHHHHHHHHHcCCc------eEEeccCCH--HHHH
Confidence            46899999 699999888877776641      688999863  4443

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.39  E-value=0.21  Score=38.10  Aligned_cols=35  Identities=29%  Similarity=0.231  Sum_probs=27.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      +..+|+|+| +|.+|...+..+...|.       +++.+|.++
T Consensus        26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga-------~vi~v~~~~   60 (170)
T d1e3ja2          26 LGTTVLVIG-AGPIGLVSVLAAKAYGA-------FVVCTARSP   60 (170)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCH
T ss_pred             CCCEEEEEc-ccccchhhHhhHhhhcc-------cccccchHH
Confidence            346899999 79999998877776663       688899863

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=94.34  E-value=0.13  Score=41.58  Aligned_cols=73  Identities=10%  Similarity=0.079  Sum_probs=41.6

Q ss_pred             CCcEEEEEcCCChHHH-HHHHHHHhcccCCCCCCeEE-EEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC-
Q 022227            4 EPVRVLVTGAAGQIGY-ALVPMIARGVMLGTDQPVIL-HMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT-   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~-~la~~L~~~~~~~~~~~~~l-~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~-   80 (300)
                      ++.||+||| +|.+|. +++..+...+      ..+| .++|+++  ++++....++. .   ....+...++..+.++ 
T Consensus        32 ~~iriaiIG-~G~~~~~~~~~~~~~~~------~~~ivav~d~~~--~~a~~~~~~~~-i---~~~~~~~~~d~~ell~~   98 (221)
T d1h6da1          32 RRFGYAIVG-LGKYALNQILPGFAGCQ------HSRIEALVSGNA--EKAKIVAAEYG-V---DPRKIYDYSNFDKIAKD   98 (221)
T ss_dssp             CCEEEEEEC-CSHHHHHTHHHHTTTCS------SEEEEEEECSCH--HHHHHHHHHTT-C---CGGGEECSSSGGGGGGC
T ss_pred             CCEEEEEEc-CcHHHHHHHHHHHHhCC------CceEEEEecCCH--HHHHHHHHhhc-c---ccccccccCchhhhccc
Confidence            457999999 799996 4555443321      2355 4889863  44443322211 0   1123334456666665 


Q ss_pred             -CCcEEEEeC
Q 022227           81 -GVNIAVMVG   89 (300)
Q Consensus        81 -~aDvVi~~a   89 (300)
                       +.|+|+++.
T Consensus        99 ~~iD~V~I~t  108 (221)
T d1h6da1          99 PKIDAVYIIL  108 (221)
T ss_dssp             TTCCEEEECS
T ss_pred             ccceeeeecc
Confidence             578898863

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.29  E-value=0.061  Score=46.39  Aligned_cols=71  Identities=15%  Similarity=0.185  Sum_probs=47.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      .+.+++|+| +|..+...+..|...--+.     ++.+++++  .++.+..+.++.+..    ..  ...+..+++++||
T Consensus       124 ~~~~l~iiG-aG~QA~~~~~al~~~~~i~-----~i~v~~r~--~e~~~~~~~~~~~~~----~~--~~~~~~~a~~~aD  189 (320)
T d1omoa_         124 NSSVFGFIG-CGTQAYFQLEALRRVFDIG-----EVKAYDVR--EKAAKKFVSYCEDRG----IS--ASVQPAEEASRCD  189 (320)
T ss_dssp             TCCEEEEEC-CSHHHHHHHHHHHHHSCCC-----EEEEECSS--HHHHHHHHHHHHHTT----CC--EEECCHHHHTSSS
T ss_pred             CccEEEEec-CcccHHHHHHHHHHHhhhh-----hcccccCC--HHHHHHHHHHHHhcC----Cc--cccchhhhhcccc
Confidence            457899999 7999988887766431112     79999986  466665655555432    11  2235578899999


Q ss_pred             EEEEe
Q 022227           84 IAVMV   88 (300)
Q Consensus        84 vVi~~   88 (300)
                      +|+.+
T Consensus       190 iV~ta  194 (320)
T d1omoa_         190 VLVTT  194 (320)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            88764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.23  E-value=0.29  Score=36.70  Aligned_cols=33  Identities=9%  Similarity=0.137  Sum_probs=27.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      .+|.|+| .|.+|..++..|...+.       +++++|.++
T Consensus         4 nHiII~G-~g~~g~~l~~~L~~~~~-------~v~vId~d~   36 (153)
T d1id1a_           4 DHFIVCG-HSILAINTILQLNQRGQ-------NVTVISNLP   36 (153)
T ss_dssp             SCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEECCC
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHcCC-------CEEEEeccc
Confidence            4799999 79999999999988764       688888764

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.11  E-value=0.037  Score=43.04  Aligned_cols=65  Identities=17%  Similarity=0.137  Sum_probs=42.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      +..||+|+| +|-++.++++.|...|. .     +|.+++++  .++.+..+..+...         .....  ...++|
T Consensus        16 ~~~~vlIlG-aGGaarai~~aL~~~g~-~-----~I~I~nR~--~~ka~~L~~~~~~~---------~~~~~--~~~~~D   75 (167)
T d1npya1          16 KNAKVIVHG-SGGMAKAVVAAFKNSGF-E-----KLKIYARN--VKTGQYLAALYGYA---------YINSL--ENQQAD   75 (167)
T ss_dssp             TTSCEEEEC-SSTTHHHHHHHHHHTTC-C-----CEEEECSC--HHHHHHHHHHHTCE---------EESCC--TTCCCS
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHCCC-C-----EEEEeccc--HHHHHHHHHhhhhh---------hhhcc--cccchh
Confidence            456899999 69999999999998764 2     68889875  35544333222111         11111  235789


Q ss_pred             EEEEe
Q 022227           84 IAVMV   88 (300)
Q Consensus        84 vVi~~   88 (300)
                      +||.+
T Consensus        76 liINa   80 (167)
T d1npya1          76 ILVNV   80 (167)
T ss_dssp             EEEEC
T ss_pred             hheec
Confidence            99886

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=94.06  E-value=0.067  Score=42.79  Aligned_cols=111  Identities=14%  Similarity=0.218  Sum_probs=60.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhh----hhhhcc--------CCcc---cEE
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME----LVDAAF--------PLLK---GVV   70 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~d----l~~~~~--------~~~~---~v~   70 (300)
                      +||.|+| .|.-|.+++..+...++-    .++...+|.+.  +.|.....+    +-....        |...   --.
T Consensus         1 ~kI~viG-vGGaG~n~v~~l~~~~~~----~v~~iainTD~--~~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e   73 (194)
T d1w5fa1           1 LKIKVIG-VGGAGNNAINRMIEIGIH----GVEFVAVNTDL--QVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALE   73 (194)
T ss_dssp             CCEEEEE-EHHHHHHHHHHHHHHCCT----TEEEEEEESCH--HHHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHH
T ss_pred             CeEEEEE-eCchHHHHHHHHHHcCCC----ceEEEEEcCCH--HHHhcCCcceEEecccccCCCcccccCchhhHhHHHH
Confidence            4899999 899999999999887653    25788888753  333211000    000000        0000   000


Q ss_pred             EeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           71 ATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        71 ~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      ......+.++++|+||++||.--..|       ..-++.+.+++   +++..  ..+-++|=|-.
T Consensus        74 ~~~~I~~~l~~~d~vfi~AGlGGgTG-------tgaapviA~~a---ke~g~--lvv~ivtlPF~  126 (194)
T d1w5fa1          74 SEEKIREVLQDTHMVFITAGFGGGTG-------TGASPVIAKIA---KEMGI--LTVAIVTTPFY  126 (194)
T ss_dssp             THHHHHHHTTTCSEEEEEEETTSSHH-------HHHHHHHHHHH---HHTTC--EEEEEEEECCG
T ss_pred             HHHHHHHHhcCCCeEEEEEecCCCcc-------cchHHHHHHHH---HHcCC--ceEEEEeechh
Confidence            01135667899999999998753221       12234444444   44432  34566676754

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.05  E-value=0.049  Score=39.45  Aligned_cols=36  Identities=25%  Similarity=0.271  Sum_probs=30.3

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      ..|.+|+|+| +|++|.-+|..|...|.       ++.+++..+
T Consensus        20 ~~p~~v~IiG-gG~ig~E~A~~l~~~G~-------~Vtlve~~~   55 (117)
T d1ebda2          20 EVPKSLVVIG-GGYIGIELGTAYANFGT-------KVTILEGAG   55 (117)
T ss_dssp             SCCSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESSS
T ss_pred             hcCCeEEEEC-CCccceeeeeeeccccc-------EEEEEEecc
Confidence            3568999999 69999999999988774       799998653

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.04  E-value=0.047  Score=40.08  Aligned_cols=36  Identities=22%  Similarity=0.426  Sum_probs=30.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      ..|.|++|+| +|++|.-+|..|...|.       ++.+++..+
T Consensus        21 ~~p~~~vIiG-~G~ig~E~A~~l~~lG~-------~Vtii~~~~   56 (122)
T d1v59a2          21 EIPKRLTIIG-GGIIGLEMGSVYSRLGS-------KVTVVEFQP   56 (122)
T ss_dssp             SCCSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSS
T ss_pred             cCCCeEEEEC-CCchHHHHHHHHHhhCc-------ceeEEEecc
Confidence            3478999999 79999999999998764       899998753

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.02  E-value=0.043  Score=43.45  Aligned_cols=64  Identities=16%  Similarity=0.032  Sum_probs=43.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..+++.|+| .|.+|+.++..+..-++       ++..+|.....+.    ..+.   .      +. ..+.++.++.||
T Consensus        43 ~~k~vgiiG-~G~IG~~va~~~~~fg~-------~v~~~d~~~~~~~----~~~~---~------~~-~~~l~ell~~sD  100 (184)
T d1ygya1          43 FGKTVGVVG-LGRIGQLVAQRIAAFGA-------YVVAYDPYVSPAR----AAQL---G------IE-LLSLDDLLARAD  100 (184)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECTTSCHHH----HHHH---T------CE-ECCHHHHHHHCS
T ss_pred             cceeeeecc-ccchhHHHHHHhhhccc-------eEEeecCCCChhH----Hhhc---C------ce-eccHHHHHhhCC
Confidence            347899999 79999999988765442       7889987532111    1111   1      11 136788999999


Q ss_pred             EEEEeC
Q 022227           84 IAVMVG   89 (300)
Q Consensus        84 vVi~~a   89 (300)
                      +|++..
T Consensus       101 iv~~~~  106 (184)
T d1ygya1         101 FISVHL  106 (184)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999875

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=94.00  E-value=0.065  Score=42.07  Aligned_cols=78  Identities=12%  Similarity=0.043  Sum_probs=46.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCc-hhhhhhhhhhhhhhccCCcccEEEeC---Chhhhc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA-AEALNGVKMELVDAAFPLLKGVVATT---DAVEAC   79 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~-~~~l~g~~~dl~~~~~~~~~~v~~~~---~~~~a~   79 (300)
                      +.++|+|+| +|..|.++++.|...+.-      ++++++++.+ .+++...+..+.... .....+.--.   +..+.+
T Consensus        17 ~~k~vlIlG-aGGaarai~~al~~~g~~------~i~i~nR~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~   88 (182)
T d1vi2a1          17 KGKTMVLLG-AGGASTAIGAQGAIEGLK------EIKLFNRRDEFFDKALAFAQRVNENT-DCVVTVTDLADQQAFAEAL   88 (182)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCS------EEEEEECSSTTHHHHHHHHHHHHHHS-SCEEEEEETTCHHHHHHHH
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHhhcCCc------eEeeeccchHHHHHHHHHHHHHHhhc-CcceEeeecccccchhhhh
Confidence            346999999 699999999999987641      7999998641 122222222222111 1111111111   234557


Q ss_pred             CCCcEEEEeC
Q 022227           80 TGVNIAVMVG   89 (300)
Q Consensus        80 ~~aDvVi~~a   89 (300)
                      .++|+||.+-
T Consensus        89 ~~~diiIN~T   98 (182)
T d1vi2a1          89 ASADILTNGT   98 (182)
T ss_dssp             HTCSEEEECS
T ss_pred             cccceecccc
Confidence            8999999974

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.95  E-value=0.093  Score=40.30  Aligned_cols=76  Identities=16%  Similarity=0.077  Sum_probs=46.9

Q ss_pred             CCcEEEEEc-CCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhh-hhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            4 EPVRVLVTG-AAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG-VKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiG-AaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g-~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      +..||+++| +...|..+++..+..-|+       ++++.-.++-  .... ...............+..+++..+++++
T Consensus         2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~-------~i~~~~P~~~--~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~   72 (161)
T d1vlva2           2 KGVKVVFMGDTRNNVATSLMIACAKMGM-------NFVACGPEEL--KPRSDVFKRCQEIVKETDGSVSFTSNLEEALAG   72 (161)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHTTC-------EEEEESCGGG--CCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTT
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCC-------EEEEecchhh--hhhhhHHHHHHHHHhhcCCceEEEecHHHhhhh
Confidence            457999999 334688888777766553       7877754320  0111 1111111111123577888899999999


Q ss_pred             CcEEEEe
Q 022227           82 VNIAVMV   88 (300)
Q Consensus        82 aDvVi~~   88 (300)
                      +|+|...
T Consensus        73 aDviyt~   79 (161)
T d1vlva2          73 ADVVYTD   79 (161)
T ss_dssp             CSEEEEC
T ss_pred             hhheecc
Confidence            9999875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.90  E-value=0.032  Score=45.58  Aligned_cols=32  Identities=25%  Similarity=0.267  Sum_probs=28.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      +||+||| +|.-|.+.|..|.+.|+       ++.++|..
T Consensus         2 KkV~IIG-aG~aGL~aA~~La~~G~-------~V~vlE~~   33 (373)
T d1seza1           2 KRVAVIG-AGVSGLAAAYKLKIHGL-------NVTVFEAE   33 (373)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHTTSC-------EEEEECSS
T ss_pred             CEEEEEC-cCHHHHHHHHHHHhCCC-------CEEEEeCC
Confidence            6999999 79999999999998875       78999864

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.03  Score=47.78  Aligned_cols=111  Identities=17%  Similarity=0.234  Sum_probs=61.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccC-CCCC---CeEEEEEecCCchhhh-hhhhhhhhh--hccCCcccEEEeCChhhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVML-GTDQ---PVILHMLDIPPAAEAL-NGVKMELVD--AAFPLLKGVVATTDAVEA   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~-~~~~---~~~l~L~D~~~~~~~l-~g~~~dl~~--~~~~~~~~v~~~~~~~~a   78 (300)
                      .||+|.| +|.-|..++..|...+.- +...   ...+.++|.+.   .+ ++..-++..  ..+.....-....++.++
T Consensus        26 ~kiv~~G-AGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~G---lv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~  101 (294)
T d1pj3a1          26 HKILFLG-AGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYG---LLVKGRKAKIDSYQEPFTHSAPESIPDTFEDA  101 (294)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTE---ECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHH
T ss_pred             cEEEEEC-ccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCC---CccCCCCcccHHHHHHhhccccccchhHHHHH
Confidence            5899999 799999999887643220 1000   01599999743   11 111001111  111111010112357777


Q ss_pred             cC--CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           79 CT--GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        79 ~~--~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      ++  +.|++|-+.|.+.   -           ..+++++.|.+.++ +.+|+-.|||..
T Consensus       102 i~~~kptvliG~S~~~g---~-----------ft~evi~~Ma~~~~-~PIIFaLSNPt~  145 (294)
T d1pj3a1         102 VNILKPSTIIGVAGAGR---L-----------FTPDVIRAMASINE-RPVIFALSNPTA  145 (294)
T ss_dssp             HHHHCCSEEEECCCSSC---C-----------SCHHHHHHHHHHCS-SCEEEECCSSGG
T ss_pred             HHhcCCceEEEecCCCC---c-----------CCHHHHHHHHhcCC-CcEEEEccCCCC
Confidence            65  7888877765432   1           11466677777876 567888899964

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=93.75  E-value=0.046  Score=43.15  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=30.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      +++||+||| +|..|...|..|.++|+       ++.|+|..+
T Consensus        42 ~~k~V~IIG-aGPAGL~AA~~la~~G~-------~Vtl~E~~~   76 (179)
T d1ps9a3          42 QKKNLAVVG-AGPAGLAFAINAAARGH-------QVTLFDAHS   76 (179)
T ss_dssp             SCCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEEESSS
T ss_pred             CCcEEEEEC-ccHHHHHHHHHHHhhcc-------ceEEEeccC
Confidence            468999999 79999999999998886       899999753

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=93.71  E-value=0.022  Score=46.64  Aligned_cols=32  Identities=22%  Similarity=0.254  Sum_probs=28.0

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      |||+||| +|..|.+.|..|.+.|+       ++.|++..
T Consensus         1 m~V~IIG-aG~aGL~aA~~L~~~G~-------~V~vlE~~   32 (347)
T d2ivda1           1 MNVAVVG-GGISGLAVAHHLRSRGT-------DAVLLESS   32 (347)
T ss_dssp             CCEEEEC-CBHHHHHHHHHHHTTTC-------CEEEECSS
T ss_pred             CeEEEEC-CCHHHHHHHHHHHhCCC-------CEEEEecC
Confidence            5899999 79999999999998875       68888864

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.65  E-value=0.063  Score=38.93  Aligned_cols=36  Identities=33%  Similarity=0.365  Sum_probs=30.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      .-|.||+|+| +|++|.-+|..|.+.|.       ++.+++..+
T Consensus        19 ~~p~~vvIiG-gG~ig~E~A~~l~~~G~-------~Vtlve~~~   54 (116)
T d1gesa2          19 ALPERVAVVG-AGYIGVELGGVINGLGA-------KTHLFEMFD   54 (116)
T ss_dssp             SCCSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSS
T ss_pred             hCCCEEEEEC-CChhhHHHHHHhhcccc-------EEEEEeecc
Confidence            3468999999 79999999999988764       789998753

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.65  E-value=0.027  Score=43.98  Aligned_cols=34  Identities=15%  Similarity=0.248  Sum_probs=29.0

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      ++||+||| +|..|...|..|.+.|+-      ++.++|..
T Consensus         4 ~~kVaIIG-aGpaGl~aA~~l~~~G~~------~V~v~E~~   37 (196)
T d1gtea4           4 SAKIALLG-AGPASISCASFLARLGYS------DITIFEKQ   37 (196)
T ss_dssp             GCCEEEEC-CSHHHHHHHHHHHHTTCC------CEEEEESS
T ss_pred             CCEEEEEC-ChHHHHHHHHHHHHCCCC------eEEEEEec
Confidence            57999999 799999999999988751      48889875

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.60  E-value=0.063  Score=39.38  Aligned_cols=34  Identities=29%  Similarity=0.395  Sum_probs=29.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      ++.+|+|+| +|++|.-+|..|.+.|.       ++++++..
T Consensus        29 ~~k~vvViG-gG~iG~E~A~~l~~~g~-------~Vtlie~~   62 (123)
T d1nhpa2          29 EVNNVVVIG-SGYIGIEAAEAFAKAGK-------KVTVIDIL   62 (123)
T ss_dssp             TCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESS
T ss_pred             CCCEEEEEC-ChHHHHHHHHHhhccce-------EEEEEEec
Confidence            457999999 79999999999998874       79999875

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.56  E-value=0.041  Score=47.18  Aligned_cols=43  Identities=21%  Similarity=0.398  Sum_probs=33.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME   57 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~d   57 (300)
                      +++||+||| ||.-|.+.|..|.+.|.       +|.+++..   +.+-|.+.+
T Consensus         1 k~KKI~IIG-aG~sGL~aA~~L~k~G~-------~V~viEk~---~~iGG~~~t   43 (314)
T d2bi7a1           1 KSKKILIVG-AGFSGAVIGRQLAEKGH-------QVHIIDQR---DHIGGNSYD   43 (314)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEEESS---SSSSGGGCE
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHhCCC-------CEEEEECC---CCCcCeeeE
Confidence            357999999 79999999999998764       78999875   345565443

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.14  Score=39.93  Aligned_cols=56  Identities=14%  Similarity=0.173  Sum_probs=40.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..++|+|+|.+.-||..++..|.+.+.       .+..++...                          .++.+.+++||
T Consensus        38 ~Gk~vvVIGrS~iVGrPLa~lL~~~ga-------tVt~~~~~t--------------------------~~l~~~~~~aD   84 (170)
T d1a4ia1          38 AGRHAVVVGRSKIVGAPMHDLLLWNNA-------TVTTCHSKT--------------------------AHLDEEVNKGD   84 (170)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTC-------EEEEECTTC--------------------------SSHHHHHTTCS
T ss_pred             ccceEEEEecCCccchHHHHHHHhccC-------ceEEEeccc--------------------------ccHHHHHhhcc
Confidence            457999999888899999999998764       677877632                          13344466777


Q ss_pred             EEEEeCCCC
Q 022227           84 IAVMVGGFP   92 (300)
Q Consensus        84 vVi~~ag~~   92 (300)
                      +||.+.|.|
T Consensus        85 ivi~a~G~~   93 (170)
T d1a4ia1          85 ILVVATGQP   93 (170)
T ss_dssp             EEEECCCCT
T ss_pred             chhhccccc
Confidence            777776655

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=93.51  E-value=0.029  Score=48.16  Aligned_cols=111  Identities=16%  Similarity=0.218  Sum_probs=59.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccC-CCCC---CeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVML-GTDQ---PVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~-~~~~---~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      .||+|.| +|..|..++..|+....- |...   ...++++|.+.   .+.....|+.+...++..+..-..++.+.++.
T Consensus        26 ~kivi~G-AGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~G---lv~~~r~d~~~~k~~~a~~~~~~~~l~~~i~~  101 (308)
T d1o0sa1          26 EKYLFFG-AGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDG---LVTKNRKEMNPRHVQFAKDMPETTSILEVIRA  101 (308)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTE---ECBTTCSSCCGGGTTTCBSSCCCCCHHHHHHH
T ss_pred             cEEEEEC-cCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCC---CccCCCcccCHHHHHHHHhcccCCcHHHHHhc
Confidence            5899999 799999988887643210 1000   01499999753   22111123332222222222122345555543


Q ss_pred             C--cEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           82 V--NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        82 a--DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      +  +++|-+.+.+   |.           ..+++++.+.++++ +.+|+-.|||..
T Consensus       102 ~kptvliG~s~~~---g~-----------ft~evv~~Ma~~~~-~PIIFaLSNPtp  142 (308)
T d1o0sa1         102 ARPGALIGASTVR---GA-----------FNEEVIRAMAEINE-RPIIFALSNPTS  142 (308)
T ss_dssp             HCCSEEEECSSCT---TC-----------SCHHHHHHHHHHCS-SCEEEECCSSGG
T ss_pred             cccccEEeccccc---CC-----------CCHHHHHHHHhhCC-CcEEEEccCCCC
Confidence            3  4555554443   21           11355667777776 567888899974

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.38  E-value=0.34  Score=33.74  Aligned_cols=72  Identities=15%  Similarity=0.214  Sum_probs=47.6

Q ss_pred             CCcEEEEEcCCChHH-HHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCC
Q 022227            4 EPVRVLVTGAAGQIG-YALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG-~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~a   82 (300)
                      ..+||-++| -|-+| +++|..|..+|+       +|.-.|...+.     ....|.+..    ..+....+ .+.++++
T Consensus         7 ~~~~ihfiG-igG~GMs~LA~~L~~~G~-------~VsGSD~~~~~-----~~~~L~~~G----i~v~~g~~-~~~i~~~   68 (96)
T d1p3da1           7 RVQQIHFIG-IGGAGMSGIAEILLNEGY-------QISGSDIADGV-----VTQRLAQAG----AKIYIGHA-EEHIEGA   68 (96)
T ss_dssp             TCCEEEEET-TTSTTHHHHHHHHHHHTC-------EEEEEESCCSH-----HHHHHHHTT----CEEEESCC-GGGGTTC
T ss_pred             hCCEEEEEE-ECHHHHHHHHHHHHhCCC-------EEEEEeCCCCh-----hhhHHHHCC----CeEEECCc-cccCCCC
Confidence            457999999 57677 567888998886       79999986432     112233221    12333333 4558999


Q ss_pred             cEEEEeCCCCC
Q 022227           83 NIAVMVGGFPR   93 (300)
Q Consensus        83 DvVi~~ag~~~   93 (300)
                      |+||.+.+++.
T Consensus        69 d~vV~S~AI~~   79 (96)
T d1p3da1          69 SVVVVSSAIKD   79 (96)
T ss_dssp             SEEEECTTSCT
T ss_pred             CEEEECCCcCC
Confidence            99999987764

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=93.37  E-value=0.14  Score=41.08  Aligned_cols=35  Identities=29%  Similarity=0.401  Sum_probs=30.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      +.++|+|.| .|.||++++..|.+.|.       .|+..|++.
T Consensus        26 ~gk~v~IqG-~G~VG~~~A~~L~~~Ga-------kvvv~d~d~   60 (201)
T d1c1da1          26 DGLTVLVQG-LGAVGGSLASLAAEAGA-------QLLVADTDT   60 (201)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEecchH
Confidence            457999999 89999999999998874       788999863

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=93.36  E-value=0.056  Score=43.34  Aligned_cols=61  Identities=13%  Similarity=0.035  Sum_probs=43.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      .++|+|+| .|.||+.++..|..-|+       ++..+|......    ...           .+. ..++++.++.||+
T Consensus        45 ~ktvgIiG-~G~IG~~va~~l~~fg~-------~v~~~d~~~~~~----~~~-----------~~~-~~~l~~l~~~~D~  100 (199)
T d1dxya1          45 QQTVGVMG-TGHIGQVAIKLFKGFGA-------KVIAYDPYPMKG----DHP-----------DFD-YVSLEDLFKQSDV  100 (199)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSCCSS----CCT-----------TCE-ECCHHHHHHHCSE
T ss_pred             ceeeeeee-cccccccccccccccce-------eeeccCCccchh----hhc-----------chh-HHHHHHHHHhccc
Confidence            36999999 89999999998876543       789999753211    000           011 1267888899999


Q ss_pred             EEEeC
Q 022227           85 AVMVG   89 (300)
Q Consensus        85 Vi~~a   89 (300)
                      |++..
T Consensus       101 v~~~~  105 (199)
T d1dxya1         101 IDLHV  105 (199)
T ss_dssp             EEECC
T ss_pred             ceeee
Confidence            99974

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=93.33  E-value=0.11  Score=40.22  Aligned_cols=68  Identities=16%  Similarity=0.171  Sum_probs=48.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..++++|+| -|.+|..+|..+...|.       .+...++++ ...|++. |   |.       +.+ ....++++.+|
T Consensus        22 aGk~vvV~G-YG~vGrG~A~~~rg~Ga-------~V~V~E~DP-i~alqA~-m---dG-------f~v-~~~~~a~~~aD   80 (163)
T d1v8ba1          22 SGKIVVICG-YGDVGKGCASSMKGLGA-------RVYITEIDP-ICAIQAV-M---EG-------FNV-VTLDEIVDKGD   80 (163)
T ss_dssp             TTSEEEEEC-CSHHHHHHHHHHHHHTC-------EEEEECSCH-HHHHHHH-T---TT-------CEE-CCHHHHTTTCS
T ss_pred             cCCEEEEec-ccccchhHHHHHHhCCC-------EEEEEecCc-hhhHHHH-h---cC-------Ccc-CchhHccccCc
Confidence            357999999 69999999999987764       788898875 2233321 1   21       112 25789999999


Q ss_pred             EEEEeCCCC
Q 022227           84 IAVMVGGFP   92 (300)
Q Consensus        84 vVi~~ag~~   92 (300)
                      ++|.+-|..
T Consensus        81 i~vTaTGn~   89 (163)
T d1v8ba1          81 FFITCTGNV   89 (163)
T ss_dssp             EEEECCSSS
T ss_pred             EEEEcCCCC
Confidence            998876543

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.15  E-value=0.059  Score=46.17  Aligned_cols=36  Identities=11%  Similarity=0.209  Sum_probs=28.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      .+||+||| +|..|...|..|++.+...     ++++++...
T Consensus         4 ~KrVaIIG-aG~sGl~~A~~L~~~~~~~-----~v~vfEk~~   39 (335)
T d2gv8a1           4 IRKIAIIG-AGPSGLVTAKALLAEKAFD-----QVTLFERRG   39 (335)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHTTTCCS-----EEEEECSSS
T ss_pred             CCeEEEEC-cCHHHHHHHHHHHHhCCCC-----CEEEEECCC
Confidence            36899999 7999999999888766432     789998753

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.13  E-value=0.045  Score=45.11  Aligned_cols=33  Identities=36%  Similarity=0.576  Sum_probs=29.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      .||+|+| +|.+|+.++..|+..|+ +     +++|+|-+
T Consensus        31 ~~VliiG-~GglGs~va~~La~~Gv-g-----~i~lvD~D   63 (247)
T d1jw9b_          31 SRVLIVG-LGGLGCAASQYLASAGV-G-----NLTLLDFD   63 (247)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTC-S-----EEEEECCC
T ss_pred             CCEEEEC-CCHHHHHHHHHHHHcCC-C-----eEEEECCc
Confidence            5999999 79999999999999886 4     89999975

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=93.10  E-value=0.06  Score=44.86  Aligned_cols=114  Identities=13%  Similarity=0.158  Sum_probs=68.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      ..||++||.     ...+..+..++.       ++..+|.++.       ..|+.+.            ..++.+..||+
T Consensus       122 g~kV~vIG~-----~P~v~~l~~~~~-------~~~VlE~~p~-------~gd~p~~------------~~~~lLp~aD~  170 (251)
T d2h1qa1         122 GKKVGVVGH-----FPHLESLLEPIC-------DLSILEWSPE-------EGDYPLP------------ASEFILPECDY  170 (251)
T ss_dssp             TSEEEEESC-----CTTHHHHHTTTS-------EEEEEESSCC-------TTCEEGG------------GHHHHGGGCSE
T ss_pred             CCEEEEEec-----chhHHHHHhcCC-------cEEEEeCCCC-------CCCCCch------------HHHHhhhcCCE
Confidence            469999994     144555555442       7888988642       1233221            34677899999


Q ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHHHHHHHHCCCCCCCcEEeeehhhHHHH
Q 022227           85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRA  164 (300)
Q Consensus        85 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~~~~~~~~~~~p~~~i~~~t~ld~~R~  164 (300)
                      ||+|+.          -++.       .-.+.+-+.+++ ++.+++.-|+..+.+.+.+    ..-+.+++.-..|..++
T Consensus       171 viiTGs----------TlvN-------~Tl~~LL~~~~~-a~~vvl~GPS~p~~P~lf~----~Gv~~lag~~v~d~~~~  228 (251)
T d2h1qa1         171 VYITCA----------SVVD-------KTLPRLLELSRN-ARRITLVGPGTPLAPVLFE----HGLQELSGFMVKDNARA  228 (251)
T ss_dssp             EEEETH----------HHHH-------TCHHHHHHHTTT-SSEEEEESTTCCCCGGGGG----TTCSEEEEEEESCHHHH
T ss_pred             EEEEec----------hhhc-------CCHHHHHHhCCc-CCEEEEECCCcccCHHHHh----cCCceEeEEEEeCHHHH
Confidence            999962          1233       333444455653 4455555577655544322    23335667678899999


Q ss_pred             HHHHHHH
Q 022227          165 LGQISEK  171 (300)
Q Consensus       165 ~~~la~~  171 (300)
                      .+.+++-
T Consensus       229 ~~~i~~G  235 (251)
T d2h1qa1         229 FRIVAGA  235 (251)
T ss_dssp             HHHHTTS
T ss_pred             HHHHHcC
Confidence            9888753

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=93.07  E-value=0.1  Score=40.49  Aligned_cols=57  Identities=11%  Similarity=0.107  Sum_probs=42.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCc
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN   83 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aD   83 (300)
                      ..++|+|+|.+.-+|..++..|.+.+.       .+...+...                          .++.+.+++||
T Consensus        36 ~GK~v~VIGrS~~VG~Pla~lL~~~ga-------tVt~~h~~t--------------------------~~l~~~~~~AD   82 (166)
T d1b0aa1          36 FGLNAVVIGASNIVGRPMSMELLLAGC-------TTTVTHRFT--------------------------KNLRHHVENAD   82 (166)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTTC-------EEEEECSSC--------------------------SCHHHHHHHCS
T ss_pred             ccceEEEEeccccccHHHHHHHHHhhc-------ccccccccc--------------------------chhHHHHhhhh
Confidence            457999999877899999999887763       677766431                          14455577888


Q ss_pred             EEEEeCCCCC
Q 022227           84 IAVMVGGFPR   93 (300)
Q Consensus        84 vVi~~ag~~~   93 (300)
                      +||.++|.|.
T Consensus        83 ivI~a~G~p~   92 (166)
T d1b0aa1          83 LLIVAVGKPG   92 (166)
T ss_dssp             EEEECSCCTT
T ss_pred             HhhhhccCcc
Confidence            8888888663

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.94  E-value=0.052  Score=43.61  Aligned_cols=41  Identities=15%  Similarity=0.323  Sum_probs=31.0

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      +|.||+||| +|.-|.+.|..|.+.|.-......++.++|..
T Consensus         1 rp~~VaVIG-aGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~   41 (239)
T d1lqta2           1 RPYYIAIVG-SGPSAFFAAASLLKAADTTEDLDMAVDMLEML   41 (239)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHHHHHHSTTCCEEEEEEESS
T ss_pred             CCcEEEEEC-cCHHHHHHHHHHHHcCCccccCCCceEEEecC
Confidence            367999999 79999999999998774111112378999875

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=92.82  E-value=0.042  Score=45.29  Aligned_cols=31  Identities=23%  Similarity=0.327  Sum_probs=27.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      -|+||| +|.+|.++|+.|+++|.       +|.++|..
T Consensus         6 DvvIIG-aGi~Gls~A~~La~~G~-------~V~vlE~~   36 (276)
T d1ryia1           6 EAVVIG-GGIIGSAIAYYLAKENK-------NTALFESG   36 (276)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCC-------cEEEEeCC
Confidence            599999 79999999999999875       69999874

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.81  E-value=0.07  Score=43.53  Aligned_cols=35  Identities=20%  Similarity=0.386  Sum_probs=29.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      |+||+||| +|..|.++|..|.+.|+-      .+.+++..+
T Consensus         1 ~~~V~IvG-aG~aGl~~A~~L~~~Gi~------~V~V~Er~~   35 (288)
T d3c96a1           1 PIDILIAG-AGIGGLSCALALHQAGIG------KVTLLESSS   35 (288)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCS------EEEEEESSS
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHhCCCC------eEEEEeCCC
Confidence            68999999 799999999999988741      578888754

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.79  E-value=0.25  Score=37.95  Aligned_cols=77  Identities=10%  Similarity=0.009  Sum_probs=46.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhh-ccCCcccEEEeCChhhhcCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~-~~~~~~~v~~~~~~~~a~~~   81 (300)
                      .+..||+++|-...|..+++..|..-|+       ++.++-.+.-  .+.....+.... .......+..+.+..+++++
T Consensus         2 l~gl~Ia~VGD~~nv~~Sli~~l~~~g~-------~v~~~~P~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~   72 (163)
T d1pvva2           2 IKGVKVVYVGDGNNVAHSLMIAGTKLGA-------DVVVATPEGY--EPDEKVIKWAEQNAAESGGSFELLHDPVKAVKD   72 (163)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHTTC-------EEEEECCTTC--CCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTT
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHcCC-------eEEEeccccc--CCChHHHHHHHHhhhcccceEEEecCHHHHhhh
Confidence            4568999999766677777766665443       7888865321  011111111111 10112466778899999999


Q ss_pred             CcEEEEe
Q 022227           82 VNIAVMV   88 (300)
Q Consensus        82 aDvVi~~   88 (300)
                      ||+|..+
T Consensus        73 adviy~~   79 (163)
T d1pvva2          73 ADVIYTD   79 (163)
T ss_dssp             CSEEEEC
T ss_pred             ccEEeec
Confidence            9998875

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=92.77  E-value=0.16  Score=39.49  Aligned_cols=79  Identities=16%  Similarity=0.129  Sum_probs=43.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEE-ecCCchhhhhhhhhhhhhhc-cC------CcccEEEeCChhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMELVDAA-FP------LLKGVVATTDAVE   77 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~-D~~~~~~~l~g~~~dl~~~~-~~------~~~~v~~~~~~~~   77 (300)
                      .||+|-| -|.||..++..|..++      .++++.+ |+.+..........|..... .+      ....+.+..+...
T Consensus         2 ~~VgING-fGRIGR~v~R~l~~~~------di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~   74 (171)
T d1cf2o1           2 KAVAING-YGTVGKRVADAIAQQD------DMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDD   74 (171)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHTSS------SEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHH
T ss_pred             eEEEEEc-CcHHHHHHHHHHHhCC------CceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhH
Confidence            6999999 8999999888776653      1355544 54432211111111111100 00      0112333335566


Q ss_pred             hcCCCcEEEEeCCC
Q 022227           78 ACTGVNIAVMVGGF   91 (300)
Q Consensus        78 a~~~aDvVi~~ag~   91 (300)
                      +++++|+||-+-|.
T Consensus        75 ~~~~vDvViEcTG~   88 (171)
T d1cf2o1          75 MLDEADIVIDCTPE   88 (171)
T ss_dssp             HHHTCSEEEECCST
T ss_pred             hhcCCCEEEEccCC
Confidence            77899999998654

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=92.63  E-value=0.06  Score=45.90  Aligned_cols=110  Identities=12%  Similarity=0.169  Sum_probs=58.6

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhc----ccCCCCC-CeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARG----VMLGTDQ-PVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT   80 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~----~~~~~~~-~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~   80 (300)
                      .||+|.| +|..|..++..|+..    |+ .+++ ...+.|+|.+.   .+.....|+.+...++.....-..++.+.++
T Consensus        26 ~kiV~~G-AGsAg~gia~~l~~~~~~~G~-~~~~a~~~i~l~D~kG---lv~~~R~~l~~~k~~~a~~~~~~~~l~~~i~  100 (298)
T d1gq2a1          26 HTVLFQG-AGEAALGIANLIVMAMQKEGV-SKEEAIKRIWMVDSKG---LIVKGRASLTPEKEHFAHEHCEMKNLEDIVK  100 (298)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHHHHHHHHTC-CHHHHHTTEEEEETTE---ECBTTCSSCCTTGGGGCBSCCCCCCHHHHHH
T ss_pred             cEEEEEC-ccHHHHHHHHHHHHHHHHcCC-ChhhccceEEEEeCCC---cccCCCcccCHHHHHHHHHhhhhhhhHHHhh
Confidence            5899999 799999988887532    32 1000 01599999753   2211122333222121111111224444444


Q ss_pred             C--CcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           81 G--VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        81 ~--aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      .  .+++|-+.+.+   |-           ..+++.+.+.++++ +.+|+-.|||..
T Consensus       101 ~vkptvliG~s~~~---g~-----------ft~evv~~ma~~~~-~PIIFaLSNPt~  142 (298)
T d1gq2a1         101 DIKPTVLIGVAAIG---GA-----------FTQQILQDMAAFNK-RPIIFALSNPTS  142 (298)
T ss_dssp             HHCCSEEEECSCCT---TC-----------SCHHHHHHHHHHCS-SCEEEECCSSGG
T ss_pred             ccChheeEeccccc---Cc-----------CCHHHHHHHHhhCC-CCEEEEccCCCC
Confidence            2  55666655443   21           11345566777776 567888899964

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.59  E-value=0.021  Score=44.89  Aligned_cols=80  Identities=9%  Similarity=0.086  Sum_probs=47.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEE--eCChhhhcCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA--TTDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~--~~~~~~a~~~   81 (300)
                      +.++|+|+|.+.-||..++..|++++.       .+.+.+.+...+........+.+..   ...+..  .+...+....
T Consensus        28 ~GK~vvVIGrS~iVG~Pla~lL~~~ga-------TVt~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~lk~~~~~   97 (171)
T d1edza1          28 YGKKCIVINRSEIVGRPLAALLANDGA-------TVYSVDVNNIQKFTRGESLKLNKHH---VEDLGEYSEDLLKKCSLD   97 (171)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSC-------EEEEECSSEEEEEESCCCSSCCCCE---EEEEEECCHHHHHHHHHH
T ss_pred             CCCEEEEECCccccHHHHHHHHHHCCC-------EEEEeccccccccccccceeeeeec---cccccccchhHHhhcccc
Confidence            457999999777789999999998763       6778876421110011111111111   111111  1125666778


Q ss_pred             CcEEEEeCCCCC
Q 022227           82 VNIAVMVGGFPR   93 (300)
Q Consensus        82 aDvVi~~ag~~~   93 (300)
                      ||+||...|.|.
T Consensus        98 aDIvIsavG~p~  109 (171)
T d1edza1          98 SDVVITGVPSEN  109 (171)
T ss_dssp             CSEEEECCCCTT
T ss_pred             CCEEEEccCCCc
Confidence            999999988765

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.55  E-value=0.066  Score=44.18  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=29.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      .+..||+||| +|.-|-+.|..|.+.|+       +|.+++..
T Consensus         3 ~~~~kViVIG-aG~aGL~aA~~L~~~G~-------~V~VlEa~   37 (449)
T d2dw4a2           3 KKTGKVIIIG-SGVSGLAAARQLQSFGM-------DVTLLEAR   37 (449)
T ss_dssp             SCCCEEEEEC-CBHHHHHHHHHHHHTTC-------EEEEECSS
T ss_pred             CCCCcEEEEC-CCHHHHHHHHHHHhCCC-------CEEEEeCC
Confidence            3567999999 79999999999999875       78888753

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.50  E-value=0.1  Score=37.60  Aligned_cols=34  Identities=21%  Similarity=0.276  Sum_probs=29.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      .|.|++|+| +|++|.-+|..|...|.       ++.|++..
T Consensus        20 ~p~~vvIiG-gG~~G~E~A~~l~~~g~-------~Vtlve~~   53 (115)
T d1lvla2          20 LPQHLVVVG-GGYIGLELGIAYRKLGA-------QVSVVEAR   53 (115)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHHTC-------EEEEECSS
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHhhccc-------ceEEEeee
Confidence            468999999 79999999999988774       79999874

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.43  E-value=0.1  Score=38.70  Aligned_cols=34  Identities=26%  Similarity=0.458  Sum_probs=29.6

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      ++.||+|+| +|++|.-+|..|...|.       ++.+++..
T Consensus        34 ~~k~v~VIG-gG~iG~E~A~~l~~~g~-------~Vtvie~~   67 (133)
T d1q1ra2          34 ADNRLVVIG-GGYIGLEVAATAIKANM-------HVTLLDTA   67 (133)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSS
T ss_pred             cCCEEEEEC-CchHHHHHHHHHHhhCc-------ceeeeeec
Confidence            457999999 79999999999998764       89999875

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.43  E-value=0.12  Score=37.42  Aligned_cols=36  Identities=31%  Similarity=0.317  Sum_probs=29.5

Q ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         2 ~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      +..|.|++|+| +|++|.-+|..|...|.       ++.++...
T Consensus        19 ~~~p~~i~IiG-~G~ig~E~A~~l~~~G~-------~Vtiv~~~   54 (119)
T d3lada2          19 QNVPGKLGVIG-AGVIGLELGSVWARLGA-------EVTVLEAM   54 (119)
T ss_dssp             SSCCSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESS
T ss_pred             ccCCCeEEEEC-CChHHHHHHHHHHHcCC-------ceEEEEee
Confidence            34578999999 79999999999998764       77787754

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.29  E-value=0.077  Score=38.88  Aligned_cols=35  Identities=17%  Similarity=0.151  Sum_probs=28.2

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      ..|.|++|+| +|++|.-+|..|...|.       ++.++..+
T Consensus        18 ~~P~~vvIIG-gG~iG~E~A~~l~~lG~-------~Vtii~~~   52 (122)
T d1h6va2          18 YCPGKTLVVG-ASYVALECAGFLAGIGL-------DVTVMVRS   52 (122)
T ss_dssp             SCCCSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEESS
T ss_pred             cCCCeEEEEC-CCccHHHHHHHHhhcCC-------eEEEEEec
Confidence            3567999999 79999999999988764       57777653

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.13  E-value=0.091  Score=41.26  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=27.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      |||+|+| +|++|..+|..|...+-     ..+|.+++..
T Consensus         1 ~KVvIIG-gG~~G~e~A~~l~~~~~-----~~~V~v~~~~   34 (198)
T d1nhpa1           1 MKVIVLG-SSHGGYEAVEELLNLHP-----DAEIQWYEKG   34 (198)
T ss_dssp             CEEEEEC-SSHHHHHHHHHHHHHCT-----TSEEEEEESS
T ss_pred             CEEEEEC-CcHHHHHHHHHHHhcCC-----CCeEEEEeCC
Confidence            6999999 69999999999876531     1378899864

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.12  E-value=0.1  Score=42.22  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=30.2

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      .+.||+||| +|..|.+.|..|.+.|+       ++.++|...
T Consensus        48 ~~k~VvIIG-aGpAGl~aA~~l~~~G~-------~v~l~E~~~   82 (233)
T d1djqa3          48 NKDSVLIVG-AGPSGSEAARVLMESGY-------TVHLTDTAE   82 (233)
T ss_dssp             SCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSS
T ss_pred             CCceEEEEc-ccHHHHHHHHHHHHhcc-------ceeeEeecc
Confidence            457999999 79999999999998875       799998753

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.99  E-value=0.92  Score=36.55  Aligned_cols=102  Identities=21%  Similarity=0.294  Sum_probs=60.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC----c--hhhhhhhhhhhhhhccCCcccEEEeCChhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP----A--AEALNGVKMELVDAAFPLLKGVVATTDAVE   77 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~----~--~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~   77 (300)
                      +-.||++.| +|..|..++..|+..+. .     ++.++|.+.    +  ...+.....++.+...+    -....++.+
T Consensus        25 ~d~riv~~G-AGsAg~gia~~l~~~~~-~-----~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~----~~~~~~l~~   93 (222)
T d1vl6a1          25 EEVKVVVNG-IGAAGYNIVKFLLDLGV-K-----NVVAVDRKGILNENDPETCLNEYHLEIARITNP----ERLSGDLET   93 (222)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHHTC-C-----EEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT----TCCCSCHHH
T ss_pred             hhcEEEEEC-hHHHHHHHHHHHHHhcc-c-----ceEeecceeEEEcCcccccccHHHHHHHhhhcc----hhhhcchHh
Confidence            346999999 79999999999987664 2     799999752    1  11122222222221111    112336788


Q ss_pred             hcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        78 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      +++++++++-+..    ++.-+.              +.+++.++ ..+++-.|||..
T Consensus        94 ~l~g~~~~~g~~~----~~~~~~--------------e~m~~~~~-rPIIFpLSNPt~  132 (222)
T d1vl6a1          94 ALEGADFFIGVSR----GNILKP--------------EWIKKMSR-KPVIFALANPVP  132 (222)
T ss_dssp             HHTTCSEEEECSC----SSCSCH--------------HHHTTSCS-SCEEEECCSSSC
T ss_pred             hccCcceeccccc----cccccH--------------HHHhhcCC-CCEEEecCCCcc
Confidence            9999998766642    222111              23455565 456888899963

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.15  Score=37.23  Aligned_cols=34  Identities=18%  Similarity=0.199  Sum_probs=29.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      -|+||+|+| +|++|.-+|..|...|.       ++.+++..
T Consensus        21 ~pk~vvIvG-gG~iG~E~A~~l~~~G~-------~Vtlv~~~   54 (125)
T d3grsa2          21 LPGRSVIVG-AGYIAVEMAGILSALGS-------KTSLMIRH   54 (125)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSS
T ss_pred             cCCEEEEEc-CCccHHHHHHHHhcCCc-------EEEEEeec
Confidence            467999999 79999999999988764       79999875

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=91.78  E-value=0.11  Score=39.38  Aligned_cols=36  Identities=17%  Similarity=0.222  Sum_probs=28.7

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      .+||+|+| +|++|..++..|...+-     ..+|+|+|..+
T Consensus         2 gkrivIvG-gG~~G~e~A~~l~~~~~-----~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVG-GGTGGATAAKYIKLADP-----SIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHCT-----TSEEEEECSCS
T ss_pred             CCcEEEEC-ccHHHHHHHHHHHHcCC-----CCcEEEEECCC
Confidence            36999999 69999999999987642     23899998654

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=91.75  E-value=0.16  Score=38.65  Aligned_cols=50  Identities=24%  Similarity=0.334  Sum_probs=33.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhh
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL   58 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl   58 (300)
                      .|++|+|.|++|+||.+...-+.+..     ..++|..+--..+-++|..++.++
T Consensus         1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~-----d~f~v~~lsa~~N~~~L~~q~~ef   50 (150)
T d1r0ka2           1 QPRTVTVLGATGSIGHSTLDLIERNL-----DRYQVIALTANRNVKDLADAAKRT   50 (150)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTG-----GGEEEEEEEESSCHHHHHHHHHHT
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCC-----CCcEEEEEEeCCCHHHHHHHHHhh
Confidence            36899999999999999877665431     123676666555555555444433

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.73  E-value=0.1  Score=41.05  Aligned_cols=79  Identities=19%  Similarity=0.175  Sum_probs=44.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEE-ecCCchhhhhhhhhhh-hhhccC-----CcccEEEeCChhhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMEL-VDAAFP-----LLKGVVATTDAVEA   78 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~-D~~~~~~~l~g~~~dl-~~~~~~-----~~~~v~~~~~~~~a   78 (300)
                      .||+|.| .|.||..++..|.+++      .++++-+ |..+..........+. .+....     ....+.+..+....
T Consensus         2 IKVaING-fGRIGR~v~Ral~~~~------dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~   74 (178)
T d1b7go1           2 VNVAVNG-YGTIGKRVADAIIKQP------DMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDL   74 (178)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHTCT------TEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHH
T ss_pred             eEEEEEC-CCHHHHHHHHHHHhCC------CCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhh
Confidence            6999999 8999999998888653      2355554 5543211110000000 000000     01233344566777


Q ss_pred             cCCCcEEEEeCCC
Q 022227           79 CTGVNIAVMVGGF   91 (300)
Q Consensus        79 ~~~aDvVi~~ag~   91 (300)
                      +.++|+||-+-|.
T Consensus        75 ~~~vDiViecTG~   87 (178)
T d1b7go1          75 IKTSDIVVDTTPN   87 (178)
T ss_dssp             HHHCSEEEECCST
T ss_pred             hhcCCEEEECCCC
Confidence            7899999998653

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.71  E-value=0.28  Score=36.77  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=28.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEec
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI   44 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~   44 (300)
                      .+.++|+|+| +|.+|..-+..|+..|.       ++++++.
T Consensus        11 l~gkrvLViG-gG~va~~ka~~Ll~~GA-------~VtVvap   44 (150)
T d1kyqa1          11 LKDKRILLIG-GGEVGLTRLYKLMPTGC-------KLTLVSP   44 (150)
T ss_dssp             CTTCEEEEEE-ESHHHHHHHHHHGGGTC-------EEEEEEE
T ss_pred             eCCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEeC
Confidence            4567999999 69999999999998774       7888854

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.43  E-value=0.052  Score=43.52  Aligned_cols=24  Identities=38%  Similarity=0.499  Sum_probs=21.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhccc
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVM   30 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~   30 (300)
                      |||+||| +|-+|.+.|+.|++.|.
T Consensus         1 mkV~VIG-aGi~GlstA~~L~~~G~   24 (246)
T d1kifa1           1 MRVVVIG-AGVIGLSTALCIHERYH   24 (246)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHHT
T ss_pred             CEEEEEC-chHHHHHHHHHHHHCCC
Confidence            6999999 79999999999998874

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.17  E-value=0.086  Score=41.65  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=27.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      .||+||| +|..|.+.|..|.+.|+-      +|.+++..
T Consensus         1 P~V~IIG-aG~aGL~aA~~L~~~G~~------~V~vlE~~   33 (347)
T d1b5qa1           1 PRVIVVG-AGMSGISAAKRLSEAGIT------DLLILEAT   33 (347)
T ss_dssp             CCEEEEC-CBHHHHHHHHHHHHTTCC------CEEEECSS
T ss_pred             CCEEEEC-CcHHHHHHHHHHHhCCCC------cEEEEECC
Confidence            3799999 799999999999988752      48888864

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.11  E-value=0.21  Score=35.93  Aligned_cols=34  Identities=21%  Similarity=0.267  Sum_probs=28.8

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      ..||.|+| +|++|.-++......|+       +++.+|.++
T Consensus        11 ~~kigIlG-gGQL~rMla~aA~~lG~-------~v~v~d~~~   44 (111)
T d1kjqa2          11 ATRVMLLG-SGELGKEVAIECQRLGV-------EVIAVDRYA   44 (111)
T ss_dssp             CCEEEEES-CSHHHHHHHHHHHTTTC-------EEEEEESST
T ss_pred             CCEEEEEe-CCHHHHHHHHHHHHCCC-------EEEEEcCCC
Confidence            46999999 79999999988777665       789999865

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=91.10  E-value=0.17  Score=39.27  Aligned_cols=36  Identities=17%  Similarity=0.082  Sum_probs=26.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      +..+|+|+| +|.||...+..+...|..      .|+..|.++
T Consensus        27 ~g~~VlI~G-aG~vGl~~~q~ak~~Ga~------~Vi~~d~~~   62 (174)
T d1jqba2          27 MGSSVVVIG-IGAVGLMGIAGAKLRGAG------RIIGVGSRP   62 (174)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHHTTTCS------CEEEECCCH
T ss_pred             CCCEEEEEc-CCcchhhhhhhhhccccc------ccccccchh
Confidence            345899999 699999887777655531      588899863

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.98  E-value=0.21  Score=37.97  Aligned_cols=35  Identities=20%  Similarity=0.233  Sum_probs=27.4

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      +..+|+|+| +|.+|...+..+...|.       +++.+|.++
T Consensus        27 ~g~~VlV~G-aG~vG~~~~~~ak~~G~-------~Vi~~~~~~   61 (166)
T d1llua2          27 PGQWVAISG-IGGLGHVAVQYARAMGL-------HVAAIDIDD   61 (166)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCH
T ss_pred             CCCEEEEee-ccccHHHHHHHHHHcCC-------ccceecchh
Confidence            346899999 69999988877776663       788899863

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=90.85  E-value=0.88  Score=34.42  Aligned_cols=130  Identities=12%  Similarity=0.091  Sum_probs=64.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCC---hhhhcC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD---AVEACT   80 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~---~~~a~~   80 (300)
                      +..+|+|+| +|.+|...+..+...|.       +++.+|.++  ++++ .+..+-  +    ..+.-..+   .....+
T Consensus        30 ~G~~VlI~G-aG~vG~~a~qlak~~Ga-------~~i~~~~~~--~~~~-~a~~lG--a----d~~i~~~~~~~~~~~~~   92 (168)
T d1uufa2          30 PGKKVGVVG-IGGLGHMGIKLAHAMGA-------HVVAFTTSE--AKRE-AAKALG--A----DEVVNSRNADEMAAHLK   92 (168)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESSG--GGHH-HHHHHT--C----SEEEETTCHHHHHTTTT
T ss_pred             CCCEEEEec-cchHHHHHHHHhhcccc-------cchhhccch--hHHH-HHhccC--C----cEEEECchhhHHHHhcC
Confidence            346899999 69999988877776654       456677653  3332 222221  0    00111111   223346


Q ss_pred             CCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchhhHH-HHHHHHCCCCCCCcE-Ee--e
Q 022227           81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA-LILKEFAPSIPAKNI-TC--L  156 (300)
Q Consensus        81 ~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~~~~-~~~~~~~~~~p~~~i-~~--~  156 (300)
                      +.|+||.+.|.+.    +    +          -..+.-..+ +.+++.++-|.+... .......  +...++ +.  +
T Consensus        93 ~~D~vid~~g~~~----~----~----------~~~~~~l~~-~G~iv~~G~~~~~~~~~~~~~l~--~k~~~i~Gs~~~  151 (168)
T d1uufa2          93 SFDFILNTVAAPH----N----L----------DDFTTLLKR-DGTMTLVGAPATPHKSPEVFNLI--MKRRAIAGSMIG  151 (168)
T ss_dssp             CEEEEEECCSSCC----C----H----------HHHHTTEEE-EEEEEECCCC-------CHHHHH--TTTCEEEECCSC
T ss_pred             CCceeeeeeecch----h----H----------HHHHHHHhc-CCEEEEeccCCCCcccccHHHHH--HCCcEEEEEeec
Confidence            7999999876542    1    1          111223333 457888776544221 1111110  111234 32  4


Q ss_pred             ehhhHHHHHHHHHHH
Q 022227          157 TRLDHNRALGQISEK  171 (300)
Q Consensus       157 t~ld~~R~~~~la~~  171 (300)
                      +.-|..++..+++++
T Consensus       152 ~~~d~~e~l~l~a~~  166 (168)
T d1uufa2         152 GIPETQEMLDFCAEH  166 (168)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHc
Confidence            677777777776653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=90.72  E-value=0.1  Score=43.61  Aligned_cols=33  Identities=24%  Similarity=0.343  Sum_probs=27.9

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      .+|+||| +|-+|.++|+.|.++|.-      +|+|+|..
T Consensus         2 ~dViIIG-aGi~G~s~A~~La~~G~~------~V~liE~~   34 (305)
T d1pj5a2           2 PRIVIIG-AGIVGTNLADELVTRGWN------NITVLDQG   34 (305)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHHHTTCC------CEEEECSS
T ss_pred             CCEEEEC-cCHHHHHHHHHHHHcCCC------cEEEEeCC
Confidence            4799999 799999999999988741      58999875

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.68  E-value=0.21  Score=33.62  Aligned_cols=33  Identities=21%  Similarity=0.193  Sum_probs=27.1

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      ++|+|+| +|+.|.-++.....-|+       +++.+|.++
T Consensus         2 k~vgIlG-~GQLgrMl~~Aa~~LG~-------~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLG-NGQLGRMLRQAGEPLGI-------AVWPVGLDA   34 (78)
T ss_dssp             EEEEEEB-CSHHHHHHHHHHGGGTE-------EEEEECTTS
T ss_pred             CEEEEEc-CCHHHHHHHHHHHHcCC-------EEEEEcCCC
Confidence            6899999 79999988877666664       899999864

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.63  E-value=0.075  Score=43.00  Aligned_cols=37  Identities=14%  Similarity=0.226  Sum_probs=29.9

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      ...||.|+| .|.-|..++..+...++-+    ++...+|.+
T Consensus        14 ~~~ki~ViG-vGGaG~n~v~~l~~~~~~~----v~~iainTD   50 (209)
T d2vapa1          14 TKAKITVVG-CGGAGNNTITRLKMEGIEG----AKTVAINTD   50 (209)
T ss_dssp             TCCCEEEEE-EHHHHHHHHHHHHHHTCTT----EEEEEEESB
T ss_pred             cCCcEEEEE-eCChHHHHHHHHHHcCCCc----eEEEEEeCC
Confidence            346999999 8999999999998877532    477888875

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.58  E-value=0.15  Score=40.77  Aligned_cols=35  Identities=11%  Similarity=0.230  Sum_probs=27.8

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      .||+||| +|..|.+.|..|.+.+. +    .+|.++|..+
T Consensus         2 ~kv~iIG-aGpaGl~aA~~L~~~~~-~----~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVG-SGPAGFYTAQHLLKHHS-R----AHVDIYEKQL   36 (230)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHCS-S----CEEEEECSSS
T ss_pred             CeEEEEC-ccHHHHHHHHHHHhcCC-C----CeEEEEeCCC
Confidence            5999999 79999999999876532 1    2799998753

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=90.48  E-value=0.43  Score=36.05  Aligned_cols=71  Identities=18%  Similarity=0.163  Sum_probs=42.6

Q ss_pred             CCcEEEEEcCCCh--HHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            4 EPVRVLVTGAAGQ--IGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiGAaG~--vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      +..||+++|=..+  |..+++..+..-|.       +++++-.++   ..... .++.+   ....+++.+++..+++++
T Consensus         2 ~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~-------~~~~~~p~~---~~~~~-~~~~~---~~~~~~~~~~d~~eai~~   67 (153)
T d1pg5a2           2 DGLVFALLGDLKYARTVNSLLRILTRFRP-------KLVYLISPQ---LLRAR-KEILD---ELNYPVKEVENPFEVINE   67 (153)
T ss_dssp             TTCEEEEEECCSSCHHHHHHHHHGGGSCC-------SEEEEECCG---GGCCC-HHHHT---TCCSCEEEESCGGGTGGG
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHHHcCC-------eeEEEeccc---ccccc-hhhcc---cCCCeEEEEeCHHHHhhc
Confidence            4579999994323  88888777665442       444443321   11100 01111   123467788899999999


Q ss_pred             CcEEEEe
Q 022227           82 VNIAVMV   88 (300)
Q Consensus        82 aDvVi~~   88 (300)
                      ||+|..+
T Consensus        68 aDvvy~~   74 (153)
T d1pg5a2          68 VDVLYVT   74 (153)
T ss_dssp             CSEEEEE
T ss_pred             CCeEEEe
Confidence            9998876

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=90.47  E-value=0.24  Score=36.28  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=29.5

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      ..|.+++|+| +|++|.-+|..+...|.       ++++++..
T Consensus        24 ~~p~~vvIiG-gG~IG~E~A~~~~~~G~-------~Vtive~~   58 (125)
T d1ojta2          24 EVPGKLLIIG-GGIIGLEMGTVYSTLGS-------RLDVVEMM   58 (125)
T ss_dssp             CCCSEEEEES-CSHHHHHHHHHHHHHTC-------EEEEECSS
T ss_pred             ccCCeEEEEC-CCHHHHHHHHHhhcCCC-------EEEEEEee
Confidence            3578999999 79999999999888774       78899764

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.44  E-value=0.33  Score=37.33  Aligned_cols=78  Identities=17%  Similarity=0.090  Sum_probs=43.4

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhc-ccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~-~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      .+..||+++|= +   ++++.+++.. ..+|    .++.++-...... ......++.........+++.+.+..+++++
T Consensus         2 l~gl~I~~vGD-~---~nV~~Sli~~~~~~g----~~~~~~~P~~~~p-~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~   72 (170)
T d1otha2           2 LKGLTLSWIGD-G---NNILHSIMMSAAKFG----MHLQAATPKGYEP-DASVTKLAEQYAKENGTKLLLTNDPLEAAHG   72 (170)
T ss_dssp             CTTCEEEEESC-S---SHHHHHHHTTTGGGT----CEEEEECCTTCCC-CHHHHHHHHHHHHHHTCCEEEESCHHHHHTT
T ss_pred             CCCCEEEEEcC-c---hhHHHHHHHHHHHcC----CEEEEEeccccCC-chHHHHHHHHHHhccCCEEEEEcCHHHHHhh
Confidence            46789999994 4   3455555432 1122    2677775432110 0111111111111124577888899999999


Q ss_pred             CcEEEEeC
Q 022227           82 VNIAVMVG   89 (300)
Q Consensus        82 aDvVi~~a   89 (300)
                      +|+|...-
T Consensus        73 advi~~~~   80 (170)
T d1otha2          73 GNVLITDT   80 (170)
T ss_dssp             CSEEEECC
T ss_pred             hhheeeec
Confidence            99998864

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.15  E-value=0.2  Score=36.30  Aligned_cols=34  Identities=18%  Similarity=0.296  Sum_probs=28.9

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      +.+|+|+| +|++|.-+|..|...|.       +++|++..+
T Consensus        32 ~~~vvIiG-gG~iG~E~A~~l~~~g~-------~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIG-GGFIGLELAGNLAEAGY-------HVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEE-CSHHHHHHHHHHHHTTC-------EEEEECSSS
T ss_pred             CCcEEEEC-CcHHHHHHHHHhhcccc-------eEEEEeccc
Confidence            36899999 69999999999998764       789998753

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.12  E-value=0.81  Score=31.28  Aligned_cols=70  Identities=11%  Similarity=0.101  Sum_probs=45.8

Q ss_pred             cEEEEEcCCChHHH-HHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCCCcE
Q 022227            6 VRVLVTGAAGQIGY-ALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI   84 (300)
Q Consensus         6 ~kV~IiGAaG~vG~-~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~aDv   84 (300)
                      |||=++| -|-+|. .+|..|.+.|+       .|.-.|..++ +..    ..|+....    .+... ...+-++++|+
T Consensus         2 ~~ihfiG-IgG~GMs~LA~~L~~~G~-------~VsGSD~~~~-~~t----~~L~~~Gi----~i~~g-h~~~~i~~~d~   63 (89)
T d1j6ua1           2 MKIHFVG-IGGIGMSAVALHEFSNGN-------DVYGSNIEET-ERT----AYLRKLGI----PIFVP-HSADNWYDPDL   63 (89)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTC-------EEEEECSSCC-HHH----HHHHHTTC----CEESS-CCTTSCCCCSE
T ss_pred             cEEEEEe-ECHHHHHHHHHHHHhCCC-------eEEEEeCCCC-hhH----HHHHHCCC----eEEee-ecccccCCCCE
Confidence            6899999 677775 57888888886       7899998643 111    12333221    22222 22455789999


Q ss_pred             EEEeCCCCC
Q 022227           85 AVMVGGFPR   93 (300)
Q Consensus        85 Vi~~ag~~~   93 (300)
                      ||.+.+++.
T Consensus        64 vV~SsAI~~   72 (89)
T d1j6ua1          64 VIKTPAVRD   72 (89)
T ss_dssp             EEECTTCCT
T ss_pred             EEEecCcCC
Confidence            999988764

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.85  E-value=0.11  Score=43.03  Aligned_cols=32  Identities=22%  Similarity=0.322  Sum_probs=28.3

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      ||+|+| +|.+|.++|..|.+.|+       ++.++|..+
T Consensus         4 ~V~IvG-aGp~Gl~~A~~L~~~G~-------~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIG-AGPSGLLLGQLLHKAGI-------DNVILERQT   35 (292)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHHTC-------CEEEECSSC
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCC-------CEEEEeCCC
Confidence            799999 69999999999999886       689998754

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=89.79  E-value=0.3  Score=35.04  Aligned_cols=35  Identities=14%  Similarity=-0.005  Sum_probs=28.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      ++++|+|+| +|++|.-+|..|...+.       ++.+++..+
T Consensus        21 ~~~~vvVvG-gG~ig~E~A~~l~~~g~-------~vt~i~~~~   55 (121)
T d1mo9a2          21 PGSTVVVVG-GSKTAVEYGCFFNATGR-------RTVMLVRTE   55 (121)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhcch-------hheEeeccc
Confidence            357999999 79999999999887663       788888753

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=89.78  E-value=0.37  Score=36.66  Aligned_cols=48  Identities=13%  Similarity=0.210  Sum_probs=32.7

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL   58 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl   58 (300)
                      +||+|.|++|+||.+...-+.+..     ..+++..+--..+-+.|..++.++
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~-----d~f~v~~Lsa~~N~~~L~~q~~~f   49 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNP-----EHFRVVALVAGKNVTRMVEQCLEF   49 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCT-----TTEEEEEEEESSCHHHHHHHHHHH
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCC-----CCcEEEEEEecCcHHHHHHHHHHH
Confidence            579999999999999887765531     124666665555556665555544

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.51  E-value=0.22  Score=36.18  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=30.1

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      ..|.+++|+| +|++|.-+|..+...|.       ++.++...+
T Consensus        23 ~~p~~~viiG-~G~iglE~A~~~~~~G~-------~Vtvi~~~~   58 (123)
T d1dxla2          23 EIPKKLVVIG-AGYIGLEMGSVWGRIGS-------EVTVVEFAS   58 (123)
T ss_dssp             SCCSEEEESC-CSHHHHHHHHHHHHHTC-------EEEEECSSS
T ss_pred             ccCCeEEEEc-cchHHHHHHHHHHhcCC-------eEEEEEEcc
Confidence            3468999999 79999999999998774       788887643

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=89.18  E-value=0.15  Score=41.96  Aligned_cols=31  Identities=29%  Similarity=0.350  Sum_probs=27.1

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      -|+||| +|.+|.++|+.|.++|+       +++|+|..
T Consensus         5 DvvIIG-aGi~Gls~A~~La~~G~-------~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVG-AGSMGMAAGYQLAKQGV-------KTLLVDAF   35 (281)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCC-------cEEEEeCC
Confidence            489999 79999999999999875       68999864

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.90  E-value=0.61  Score=37.01  Aligned_cols=110  Identities=18%  Similarity=0.222  Sum_probs=60.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhh----h----hhhhhcc----CCcc---cEEE
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK----M----ELVDAAF----PLLK---GVVA   71 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~----~----dl~~~~~----~~~~---~v~~   71 (300)
                      +|.|+| -|..|.+++..|...++.    .+++..+|.+.  +.|....    .    ++....-    |-..   --..
T Consensus         3 ~IkViG-vGGaG~n~v~~~~~~~~~----~v~~iainTD~--~~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~   75 (198)
T d1ofua1           3 VIKVIG-VGGGGGNAVNHMAKNNVE----GVEFICANTDA--QALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALED   75 (198)
T ss_dssp             CEEEEE-EHHHHHHHHHHHHHTTCC----SEEEEEEESBT--GGGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHT
T ss_pred             eEEEEE-ECchHHHHHHHHHHcCCC----CeEEEEEeCcH--HHHhcCCccceeccccccccCCCCCCChHHHHHHHHHH
Confidence            578999 899999999999887652    35788888864  3332100    0    0000000    0000   0000


Q ss_pred             eCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        72 ~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      .....+.++++|+||++||.--..|       ..-++.+.+++   ++.+.  ..+-++|=|-.
T Consensus        76 ~~~I~~~l~~~d~vfi~AGlGGGTG-------tgaapviA~~a---ke~g~--lvvaivtlPF~  127 (198)
T d1ofua1          76 RERISEVLEGADMVFITTGMGGGTG-------TGAAPIIAEVA---KEMGI--LTVAVVTRPFP  127 (198)
T ss_dssp             HHHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHH---HHTTC--EEEEEEEECCG
T ss_pred             HHHHHHHhCCCCeEEEEecCCCCcc-------ccHHHHHHHHH---HHcCC--CEEEEEecchH
Confidence            1124667899999999998753222       12345544444   44432  34666676753

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.86  E-value=0.14  Score=39.47  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=19.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHh
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIAR   27 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~   27 (300)
                      +.++||+|+| +|.+|...+..|..
T Consensus         5 ~~k~kv~iIG-~G~~g~~h~~~l~~   28 (172)
T d1lc0a1           5 SGKFGVVVVG-VGRAGSVRLRDLKD   28 (172)
T ss_dssp             CCSEEEEEEC-CSHHHHHHHHHHTS
T ss_pred             CCCcEEEEEc-CCHHHHHHHHHHHh
Confidence            4568999999 79999988877654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.76  E-value=0.2  Score=39.13  Aligned_cols=31  Identities=19%  Similarity=0.221  Sum_probs=27.3

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      -|+||| +|..|.+.|..|.+.|.       +|.++|..
T Consensus         7 DviViG-aG~~Gl~~A~~La~~G~-------~V~vlE~~   37 (297)
T d2bcgg1           7 DVIVLG-TGITECILSGLLSVDGK-------KVLHIDKQ   37 (297)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCC-------CEEEEcCC
Confidence            489999 79999999999998875       68999875

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.74  E-value=0.75  Score=36.46  Aligned_cols=110  Identities=20%  Similarity=0.199  Sum_probs=60.8

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhh-hhccCCccc--------------EEE
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELV-DAAFPLLKG--------------VVA   71 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~-~~~~~~~~~--------------v~~   71 (300)
                      +|-|+| -|-.|.+++..+...++.    .++...+|.+.  ..|.....+-. .........              ...
T Consensus         3 ~IkViG-vGGaG~n~vn~~~~~~~~----~v~~iainTD~--~~L~~~~~~~ki~iG~~~t~G~Gagg~p~~g~~aa~e~   75 (198)
T d1rq2a1           3 VIKVVG-IGGGGVNAVNRMIEQGLK----GVEFIAINTDA--QALLMSDADVKLDVGRDSTRGLGAGADPEVGRKAAEDA   75 (198)
T ss_dssp             CEEEEE-EHHHHHHHHHHHHHTTCC----SEEEEEEESCH--HHHHHCCCSEEEECCTTTC-----CCCHHHHHHHHHHT
T ss_pred             eEEEEE-eCchHHHHHHHHHHcCCC----CceEEEEcchH--HHHhcCCcchhhccccccccCCCcCcChhhhHhhHHHH
Confidence            577899 899999999999987753    25778888752  22211000000 000000000              000


Q ss_pred             eCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEecCchh
Q 022227           72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN  135 (300)
Q Consensus        72 ~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~sNP~~  135 (300)
                      .....++++++|+||++||.--..|       ..-++++.++++..   +.  ..+-++|-|-.
T Consensus        76 ~~~I~~~l~~~d~vfi~AGlGGgTG-------tGaaPviA~iake~---g~--l~v~ivt~PF~  127 (198)
T d1rq2a1          76 KDEIEELLRGADMVFVTAGEGGGTG-------TGGAPVVASIARKL---GA--LTVGVVTRPFS  127 (198)
T ss_dssp             HHHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHH---TC--EEEEEEEECCG
T ss_pred             HHHHHHHhcCCCEEEEEEecCCCCC-------cchHHHHHHHHHHc---CC--cEEEEEecChH
Confidence            1135677899999999998753222       12356666665543   21  34666777754

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=88.38  E-value=0.43  Score=38.64  Aligned_cols=72  Identities=13%  Similarity=0.116  Sum_probs=38.2

Q ss_pred             CCCcEEEEEcCCCh----HHHHHHHHHHhcccCCCCCCeEEE-EEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhh
Q 022227            3 KEPVRVLVTGAAGQ----IGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE   77 (300)
Q Consensus         3 ~~~~kV~IiGAaG~----vG~~la~~L~~~~~~~~~~~~~l~-L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~   77 (300)
                      .+++||+||| +|.    ++...+..+....     ...+|+ ++|.+.  ++++.....+   .   .......++.++
T Consensus        14 ~k~irvgiIG-~G~~~~~~~~~h~~ai~~~~-----~~~~ivav~d~~~--~~~~~~~~~~---~---~~~~~~~~~~~~   79 (237)
T d2nvwa1          14 SRPIRVGFVG-LTSGKSWVAKTHFLAIQQLS-----SQFQIVALYNPTL--KSSLQTIEQL---Q---LKHATGFDSLES   79 (237)
T ss_dssp             GCCEEEEEEC-CCSTTSHHHHTHHHHHHHTT-----TTEEEEEEECSCH--HHHHHHHHHT---T---CTTCEEESCHHH
T ss_pred             CCCeEEEEEe-cCccccHHHHHHHHHHHhcC-----CCeEEEEEEcCCH--HHHHHHHHhc---c---cccceeecchhh
Confidence            4678999999 565    4444444554321     113554 788753  4433222111   1   112233456666


Q ss_pred             hcC--CCcEEEEe
Q 022227           78 ACT--GVNIAVMV   88 (300)
Q Consensus        78 a~~--~aDvVi~~   88 (300)
                      .++  +.|+|+++
T Consensus        80 l~~~~~iD~V~i~   92 (237)
T d2nvwa1          80 FAQYKDIDMIVVS   92 (237)
T ss_dssp             HHHCTTCSEEEEC
T ss_pred             cccccccceeecc
Confidence            664  57788886

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.26  E-value=0.15  Score=45.55  Aligned_cols=34  Identities=32%  Similarity=0.569  Sum_probs=29.4

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      .||+|+| +|.+|+.++..|+..|+ +     ++.|+|.+.
T Consensus        38 ~kVlvvG-~GglG~ei~k~L~~~Gv-g-----~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIG-AGGLGCELLKNLALSGF-R-----QIHVIDMDT   71 (426)
T ss_dssp             CCEEEEC-SSTTHHHHHHHHHTTTC-C-----CEEEECCCB
T ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCC-C-----eEEEEECCC
Confidence            5899999 69999999999998885 4     699999753

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=87.81  E-value=2.1  Score=31.57  Aligned_cols=34  Identities=6%  Similarity=0.010  Sum_probs=27.8

Q ss_pred             CcEEEEEcCC---ChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            5 PVRVLVTGAA---GQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         5 ~~kV~IiGAa---G~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      ++.|+|+||+   +..|+.++..|...|+       +++++..+
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~-------~v~pVnP~   55 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGY-------DVYPVNPK   55 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC-------EEEEECTT
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCC-------EEEEECCc
Confidence            5689999987   5789999999988775       68888653

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=87.69  E-value=1.1  Score=36.23  Aligned_cols=67  Identities=21%  Similarity=0.152  Sum_probs=43.5

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhc-CCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC-TGV   82 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~-~~a   82 (300)
                      +.++|+|-| .|.||++++..|.+.|.       .++..|.+.  +.+.....+.  ..       ... +..+.+ .+|
T Consensus        38 ~g~~v~IqG-~GnVG~~~a~~L~~~Ga-------kvv~~d~~~--~~~~~~~~~~--g~-------~~~-~~~~~~~~~c   97 (230)
T d1leha1          38 EGLAVSVQG-LGNVAKALCKKLNTEGA-------KLVVTDVNK--AAVSAAVAEE--GA-------DAV-APNAIYGVTC   97 (230)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHH--CC-------EEC-CGGGTTTCCC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEeecccH--HHHHHHHHhc--CC-------ccc-CCcccccccc
Confidence            457999999 89999999999998874       688888863  3332211111  11       111 222333 489


Q ss_pred             cEEEEeCC
Q 022227           83 NIAVMVGG   90 (300)
Q Consensus        83 DvVi~~ag   90 (300)
                      |+.+-+|.
T Consensus        98 DIl~PcA~  105 (230)
T d1leha1          98 DIFAPCAL  105 (230)
T ss_dssp             SEEEECSC
T ss_pred             cEeccccc
Confidence            99988874

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.37  E-value=0.24  Score=41.63  Aligned_cols=41  Identities=10%  Similarity=0.191  Sum_probs=31.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhh
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME   57 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~d   57 (300)
                      .+|+||| ||..|.++|..|.+.|.       +|.+++..   +.+-|.+.+
T Consensus         2 ~dv~IIG-aG~sGl~~A~~L~~~g~-------~V~iiEk~---~~iGG~~~t   42 (298)
T d1i8ta1           2 YDYIIVG-SGLFGAVCANELKKLNK-------KVLVIEKR---NHIGGNAYT   42 (298)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHGGGTC-------CEEEECSS---SSSSGGGCE
T ss_pred             ccEEEEC-CcHHHHHHHHHHHhCCC-------cEEEEECC---CCcccceEE
Confidence            5799999 79999999999988764       68888874   344454433

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.08  E-value=0.61  Score=35.67  Aligned_cols=35  Identities=20%  Similarity=0.212  Sum_probs=26.1

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      +..+|+|+| +|.+|...+..+...|..      .+...|.+
T Consensus        28 ~g~~VlI~G-~G~iG~~~~~~ak~~g~~------~v~~~~~~   62 (174)
T d1f8fa2          28 PASSFVTWG-AGAVGLSALLAAKVCGAS------IIIAVDIV   62 (174)
T ss_dssp             TTCEEEEES-CSHHHHHHHHHHHHHTCS------EEEEEESC
T ss_pred             CCCEEEEeC-CCHHHhhhhhcccccccc------eeeeeccH
Confidence            346899999 599999888777666531      56777875

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.90  E-value=0.14  Score=40.02  Aligned_cols=37  Identities=14%  Similarity=0.166  Sum_probs=29.4

Q ss_pred             CCCCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         1 m~~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      |+....+|+||| +|..|...|..|.+.++       +++++|..
T Consensus         1 m~~~~~~VvIIG-gGpaGl~aA~~~ar~g~-------~v~vie~~   37 (192)
T d1vdca1           1 LETHNTRLCIVG-SGPAAHTAAIYAARAEL-------KPLLFEGW   37 (192)
T ss_dssp             CEEEEEEEEEEC-CSHHHHHHHHHHHHTTC-------CCEEECCS
T ss_pred             CCcccceEEEEC-CCHHHHHHHHHHHHcCC-------cEEEEEee
Confidence            444567999999 69999999998888775       57778753

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.54  E-value=0.74  Score=32.79  Aligned_cols=38  Identities=18%  Similarity=0.148  Sum_probs=27.7

Q ss_pred             CCCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         3 ~~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      ..|.+|+|+| +|++|.-+|..|...+..+    .++.|++..
T Consensus        18 ~~p~~v~ivG-gG~ig~E~A~~l~~l~~~~----~~Vtli~~~   55 (117)
T d1aoga2          18 EPPRRVLTVG-GGFISVEFAGIFNAYKPKD----GQVTLCYRG   55 (117)
T ss_dssp             SCCSEEEEEC-SSHHHHHHHHHHHHHCCTT----CEEEEEESS
T ss_pred             hcCCeEEEEC-CcHHHHHHHHHhhhcccCC----cEEEEEecc
Confidence            3468999999 6999999997776543211    278888764

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.40  E-value=0.35  Score=36.32  Aligned_cols=31  Identities=19%  Similarity=0.462  Sum_probs=24.5

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      .||+|+| +|++|..++..|.+ +.       ++.+++..
T Consensus         1 ~rVvIIG-gG~~G~e~A~~l~~-~~-------~Vtvv~~~   31 (167)
T d1xhca1           1 SKVVIVG-NGPGGFELAKQLSQ-TY-------EVTVIDKE   31 (167)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHTT-TS-------EEEEECSS
T ss_pred             CeEEEEC-CcHHHHHHHHHHHc-CC-------CEEEEecc
Confidence            3899999 79999999988854 22       68888753

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=86.34  E-value=1.4  Score=32.97  Aligned_cols=73  Identities=12%  Similarity=0.062  Sum_probs=44.8

Q ss_pred             CCcEEEEEcCC--ChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            4 EPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiGAa--G~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      +..||+++|=.  +.|..+++..+..-|.       +++++-.+.  -.......+...   .....+..+.++.+++++
T Consensus         3 ~gl~i~~vGD~~~srV~~Sli~~~~~~g~-------~~~~~~P~~--~~~~~~~~~~~~---~~~~~~~~~~d~~~av~~   70 (157)
T d1ml4a2           3 DGLKIGLLGDLKYGRTVHSLAEALTFYDV-------ELYLISPEL--LRMPRHIVEELR---EKGMKVVETTTLEDVIGK   70 (157)
T ss_dssp             SSEEEEEESCTTTCHHHHHHHHHGGGSCE-------EEEEECCGG--GCCCHHHHHHHH---HTTCCEEEESCTHHHHTT
T ss_pred             CCCEEEEEcCCccChHHHHHHHHHHhcCC-------cEEEEccch--hhcchHHHHHHH---hhcccceeecCHHHhhcc
Confidence            46799999932  5788888777655442       677775432  111111111111   123466778899999999


Q ss_pred             CcEEEEe
Q 022227           82 VNIAVMV   88 (300)
Q Consensus        82 aDvVi~~   88 (300)
                      +|+|...
T Consensus        71 aDvvy~~   77 (157)
T d1ml4a2          71 LDVLYVT   77 (157)
T ss_dssp             CSEEEEC
T ss_pred             CcEEEee
Confidence            9988775

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.96  E-value=4.5  Score=33.84  Aligned_cols=31  Identities=10%  Similarity=0.266  Sum_probs=24.2

Q ss_pred             EEEEcCCC--hHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            8 VLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         8 V~IiGAaG--~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      ..||||++  -||..++..|++.|.       +|+|.+..
T Consensus         5 AlITGaa~s~GIG~aiA~~la~~GA-------~V~i~~~~   37 (329)
T d1uh5a_           5 CFIAGIGDTNGYGWGIAKELSKRNV-------KIIFGIWP   37 (329)
T ss_dssp             EEEECCSSSSSHHHHHHHHHHHTTC-------EEEEEECG
T ss_pred             EEEeCCCCCChHHHHHHHHHHHcCC-------EEEEEeCc
Confidence            45888543  699999999999885       78887754

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.91  E-value=0.7  Score=34.72  Aligned_cols=34  Identities=21%  Similarity=0.175  Sum_probs=25.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      +..+|+|.| +|.+|...+..+...+.       ++...|.+
T Consensus        27 ~g~~vlv~G-~G~iG~~a~~~a~~~g~-------~v~~~~~~   60 (168)
T d1rjwa2          27 PGEWVAIYG-IGGLGHVAVQYAKAMGL-------NVVAVDIG   60 (168)
T ss_dssp             TTCEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSC
T ss_pred             CCCEEEEee-cccchhhhhHHHhcCCC-------eEeccCCC
Confidence            346899998 69999987777666553       68888875

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=85.70  E-value=0.42  Score=36.83  Aligned_cols=35  Identities=20%  Similarity=0.198  Sum_probs=27.3

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      ..+|+|+| +|.||...+..+...|. .     .|+.+|.++
T Consensus        29 G~~VlV~G-aG~iG~~~~~~ak~~Ga-~-----~Vi~~~~~~   63 (182)
T d1vj0a2          29 GKTVVIQG-AGPLGLFGVVIARSLGA-E-----NVIVIAGSP   63 (182)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHTTB-S-----EEEEEESCH
T ss_pred             CCEEEEEC-CCccchhheeccccccc-c-----ccccccccc
Confidence            46899999 69999988877776664 1     688999863

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=85.63  E-value=0.18  Score=35.80  Aligned_cols=22  Identities=27%  Similarity=0.298  Sum_probs=19.2

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHh
Q 022227            5 PVRVLVTGAAGQIGYALVPMIAR   27 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~   27 (300)
                      .++|+|+| +|.-|.-++..|..
T Consensus        32 gK~VlVVG-~g~Sa~dia~~l~~   53 (107)
T d2gv8a2          32 GESVLVVG-GASSANDLVRHLTP   53 (107)
T ss_dssp             TCCEEEEC-SSHHHHHHHHHHTT
T ss_pred             CCeEEEEC-CCCCHHHHHHHHHH
Confidence            47899999 79999999998864

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=85.30  E-value=1.4  Score=33.10  Aligned_cols=63  Identities=10%  Similarity=0.080  Sum_probs=41.4

Q ss_pred             CCcEEEEEcC--CChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            4 EPVRVLVTGA--AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiGA--aG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      +.+||+++|=  -+.+..+++..+..-|.       ++++...++    +.   .+        ...+....+..+++++
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~-------~~~i~~P~~----~~---~~--------~~~~~~~~~~~ea~~~   59 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGA-------RVLFSGPSE----WQ---DE--------ENTFGTYVSMDEAVES   59 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCC-------cccccCCch----hh---cc--------ccceeEEEechhcccc
Confidence            3579999994  25688888887776543       566665431    11   00        1133455678899999


Q ss_pred             CcEEEEe
Q 022227           82 VNIAVMV   88 (300)
Q Consensus        82 aDvVi~~   88 (300)
                      +|+|..+
T Consensus        60 aDviy~~   66 (151)
T d2at2a2          60 SDVVMLL   66 (151)
T ss_pred             Cceeeee
Confidence            9998875

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=85.02  E-value=0.99  Score=31.95  Aligned_cols=37  Identities=19%  Similarity=0.212  Sum_probs=26.7

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      .|.+|+|+| +|++|.-+|..|....-.+    .++.+++..
T Consensus        17 ~p~~v~IiG-gG~ig~E~A~~l~~~~~~g----~~Vtli~~~   53 (117)
T d1feca2          17 APKRALCVG-GGYISIEFAGIFNAYKARG----GQVDLAYRG   53 (117)
T ss_dssp             CCSEEEEEC-SSHHHHHHHHHHHHHSCTT----CEEEEEESS
T ss_pred             cCCeEEEEC-CChHHHHHHHHhHhhcccc----cccceeccc
Confidence            468999999 6999999987665432111    278888764

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.84  E-value=0.72  Score=35.22  Aligned_cols=35  Identities=26%  Similarity=0.205  Sum_probs=26.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      +..+|+|+||+|.+|...+..+...|.       +++..+..
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~-------~vi~~~~~   61 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGL-------RVLAAASR   61 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTC-------EEEEEESS
T ss_pred             CCCEEEEEeccccchhhhhhhhccccc-------cccccccc
Confidence            446899999889999988877777664       56666654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=84.62  E-value=0.46  Score=39.98  Aligned_cols=33  Identities=27%  Similarity=0.302  Sum_probs=28.3

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      ..|+||| ||..|-..+..|.+.|+       +++++|..+
T Consensus         8 ~dV~IIG-AG~sGl~~a~~L~~~G~-------~v~i~Ek~~   40 (298)
T d1w4xa1           8 VDVLVVG-AGFSGLYALYRLRELGR-------SVHVIETAG   40 (298)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSS
T ss_pred             CCEEEEC-ccHHHHHHHHHHHhCCC-------CEEEEEcCC
Confidence            5799999 79999999999998775       688998753

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=84.24  E-value=1.8  Score=32.48  Aligned_cols=74  Identities=15%  Similarity=0.112  Sum_probs=43.7

Q ss_pred             CCcEEEEEcCC--ChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcccEEEeCChhhhcCC
Q 022227            4 EPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG   81 (300)
Q Consensus         4 ~~~kV~IiGAa--G~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~~v~~~~~~~~a~~~   81 (300)
                      +..||+++|=.  |.|..+++..+..-+.      ..+++.-...  ........+..+.   ....+..+.++.+++++
T Consensus         3 ~gl~i~~vGD~~nsrv~~Sli~~l~~~~~------~~~~~~~P~~--~~~~~~~~~~~~~---~~~~~~~~~d~~~a~~~   71 (160)
T d1ekxa2           3 DNLHVAMVGDLKYGRTVHSLTQALAKFDG------NRFYFIAPDA--LAMPQYILDMLDE---KGIAWSLHSSIEEVMAE   71 (160)
T ss_dssp             SSCEEEEESCTTTCHHHHHHHHHHTTSSS------CEEEEECCGG--GCCCHHHHHHHHH---TTCCEEECSCSTTTGGG
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHHHHcCC------CeEEeeccch--hhhhHHHHHHHhh---hccccccccCHHHHhCc
Confidence            46799999932  3388777766654332      1456664321  1111122222222   23466778899999999


Q ss_pred             CcEEEEe
Q 022227           82 VNIAVMV   88 (300)
Q Consensus        82 aDvVi~~   88 (300)
                      ||+|..+
T Consensus        72 aDvvy~~   78 (160)
T d1ekxa2          72 VDILYMT   78 (160)
T ss_dssp             CSEEEEC
T ss_pred             CceEEee
Confidence            9998865

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.86  E-value=0.64  Score=34.49  Aligned_cols=22  Identities=41%  Similarity=0.616  Sum_probs=19.6

Q ss_pred             EEEEEcCCChHHHHHHHHHHhc
Q 022227            7 RVLVTGAAGQIGYALVPMIARG   28 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~   28 (300)
                      ||+|+||+|.+|+.++..+...
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~   22 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAA   22 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHS
T ss_pred             CEEEECCCCHHHHHHHHHHHhC
Confidence            8999999999999999887764

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=83.75  E-value=0.51  Score=37.71  Aligned_cols=32  Identities=25%  Similarity=0.213  Sum_probs=27.5

Q ss_pred             EEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         7 kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      -|+||| +|..|...|..|.+.|+       ++.|+|..+
T Consensus         4 DViIIG-aG~aGl~aA~~la~~G~-------~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIG-GGPSGLMAAIGAAEEGA-------NVLLLDKGN   35 (251)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCC-------cEEEEeCCC
Confidence            389999 79999999999998875       689998753

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.69  E-value=0.47  Score=39.29  Aligned_cols=30  Identities=23%  Similarity=0.376  Sum_probs=26.3

Q ss_pred             EEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         8 V~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      |+||| +|..|.+.|..|.+.|+       ++.+++..
T Consensus         2 ViVIG-aG~aGL~aA~~L~~~G~-------~V~VlE~~   31 (383)
T d2v5za1           2 VVVVG-GGISGMAAAKLLHDSGL-------NVVVLEAR   31 (383)
T ss_dssp             EEEEC-CBHHHHHHHHHHHHTTC-------CEEEEESS
T ss_pred             EEEEC-CCHHHHHHHHHHHhCCC-------CEEEEecC
Confidence            78999 79999999999999875       68888864

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.67  E-value=3.8  Score=29.62  Aligned_cols=36  Identities=22%  Similarity=0.384  Sum_probs=26.9

Q ss_pred             CCcEEEEEcCC---ChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            4 EPVRVLVTGAA---GQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         4 ~~~kV~IiGAa---G~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      +|+.|+|+||+   +..|..+...|...+ -+     +|+.+...
T Consensus         7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g-----~v~pVnP~   45 (129)
T d2csua1           7 NPKGIAVIGASNDPKKLGYEVFKNLKEYK-KG-----KVYPVNIK   45 (129)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCC-SS-----EEEEECSS
T ss_pred             CCCeEEEEccCCCCCCcHHHHHHHHHHcC-CC-----cEEEeccC
Confidence            57899999987   788988888876543 22     78888654

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=83.25  E-value=1.9  Score=34.48  Aligned_cols=70  Identities=17%  Similarity=0.275  Sum_probs=43.0

Q ss_pred             CCcEEEEEcC----------------CChHHHHHHHHHHhcccCCCCCCeEEEEEecCCchhhhhhhhhhhhhhccCCcc
Q 022227            4 EPVRVLVTGA----------------AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLK   67 (300)
Q Consensus         4 ~~~kV~IiGA----------------aG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~~~~~l~g~~~dl~~~~~~~~~   67 (300)
                      +.+||+||+|                +|.+|..+|..+..+|.       +|.|+--+.+.....            ...
T Consensus         5 ~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga-------~V~li~g~~~~~~p~------------~~~   65 (223)
T d1u7za_           5 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGA-------NVTLVSGPVSLPTPP------------FVK   65 (223)
T ss_dssp             TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTC-------EEEEEECSCCCCCCT------------TEE
T ss_pred             CCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCC-------chhhhhcccccCccc------------ccc
Confidence            4568888764                68999999999998875       788875432111100            001


Q ss_pred             cEEEeC------ChhhhcCCCcEEEEeCCCC
Q 022227           68 GVVATT------DAVEACTGVNIAVMVGGFP   92 (300)
Q Consensus        68 ~v~~~~------~~~~a~~~aDvVi~~ag~~   92 (300)
                      .+.+.+      ...+.++++|++|++|.+.
T Consensus        66 ~~~~~t~~~m~~~~~~~~~~~D~~i~aAAvs   96 (223)
T d1u7za_          66 RVDVMTALEMEAAVNASVQQQNIFIGCAAVA   96 (223)
T ss_dssp             EEECCSHHHHHHHHHHHGGGCSEEEECCBCC
T ss_pred             cceehhhHHHHHHHHhhhccceeEeeeechh
Confidence            111111      1234467899999998764

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=82.65  E-value=0.31  Score=35.67  Aligned_cols=36  Identities=22%  Similarity=0.443  Sum_probs=24.8

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCe-EEEEEecCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPV-ILHMLDIPP   46 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~-~l~L~D~~~   46 (300)
                      ++.+|+|+| ||..|..++..+...      .+. -+.++|.++
T Consensus         2 ~~~~v~I~G-aG~~G~~l~~~l~~~------~~~~iv~fiDdd~   38 (126)
T d2dt5a2           2 RKWGLCIVG-MGRLGSALADYPGFG------ESFELRGFFDVDP   38 (126)
T ss_dssp             SCEEEEEEC-CSHHHHHHHHCSCCC------SSEEEEEEEESCT
T ss_pred             CCceEEEEc-CCHHHHHHHHhHhhc------CCcEEEEEEeCch
Confidence            356899999 799999887654321      122 467888764

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.53  E-value=1.1  Score=34.19  Aligned_cols=34  Identities=24%  Similarity=0.177  Sum_probs=25.4

Q ss_pred             CcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         5 ~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      ..+|.|+||+|.+|...+..+...|.       +++..+.+
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~-------~vi~~~~~   59 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGA-------RIYTTAGS   59 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTC-------EEEEEESS
T ss_pred             CCEEEEECCCCCcccccchhhccccc-------cceeeecc
Confidence            46899999999999998887766653       55555543

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=82.46  E-value=0.37  Score=39.08  Aligned_cols=33  Identities=18%  Similarity=0.215  Sum_probs=28.2

Q ss_pred             cEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         6 ~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      ..|+||| +|..|...|..|.+.|.       ++.|+|..+
T Consensus         5 ~DViIIG-aG~aGl~aA~~la~~G~-------~V~vlEk~~   37 (253)
T d2gqfa1           5 SENIIIG-AGAAGLFCAAQLAKLGK-------SVTVFDNGK   37 (253)
T ss_dssp             CSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSS
T ss_pred             CcEEEEC-cCHHHHHHHHHHHHCCC-------cEEEEecCC
Confidence            4699999 79999999999998875       689998753

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=81.61  E-value=2.7  Score=30.76  Aligned_cols=34  Identities=9%  Similarity=-0.011  Sum_probs=26.8

Q ss_pred             CcEEEEEcCC---ChHHHHHHHHHHhcccCCCCCCeEEEEEecC
Q 022227            5 PVRVLVTGAA---GQIGYALVPMIARGVMLGTDQPVILHMLDIP   45 (300)
Q Consensus         5 ~~kV~IiGAa---G~vG~~la~~L~~~~~~~~~~~~~l~L~D~~   45 (300)
                      ++.|+|+||+   +..|..++..|.+.|+       .+.++-.+
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~-------~~~~v~~~   49 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY-------RVLPVNPR   49 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTC-------EEEEECGG
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCC-------CceEEEec
Confidence            5789999976   3588989988888876       67787654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.58  E-value=1.5  Score=33.12  Aligned_cols=35  Identities=14%  Similarity=0.027  Sum_probs=27.3

Q ss_pred             CCcEEEEEcCCChHHHHHHHHHHhcccCCCCCCeEEEEEecCC
Q 022227            4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP   46 (300)
Q Consensus         4 ~~~kV~IiGAaG~vG~~la~~L~~~~~~~~~~~~~l~L~D~~~   46 (300)
                      +..+|+|+| +|.+|...+..+...|.       +++.+|.++
T Consensus        27 ~g~~vlI~G-aG~vG~~a~q~ak~~G~-------~vi~~~~~~   61 (168)
T d1piwa2          27 PGKKVGIVG-LGGIGSMGTLISKAMGA-------ETYVISRSS   61 (168)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHHTC-------EEEEEESSS
T ss_pred             CCCEEEEEC-CCCcchhHHHHhhhccc-------cccccccch
Confidence            346899999 69999988877666664       688889864

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=80.71  E-value=3.7  Score=33.25  Aligned_cols=49  Identities=16%  Similarity=0.104  Sum_probs=33.7

Q ss_pred             cEEEeCChhhhcCCCcEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEec
Q 022227           68 GVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA  131 (300)
Q Consensus        68 ~v~~~~~~~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~~~viv~s  131 (300)
                      .++++++..+++++||+||.+--.+               +...++++.|..+.++++.++..|
T Consensus       128 Gv~v~~d~~Eav~~ADiII~~vP~~---------------~~v~~Vi~~I~~~l~~g~Iiid~S  176 (242)
T d2b0ja2         128 GLKVTSDDREAVEGADIVITWLPKG---------------NKQPDIIKKFADAIPEGAIVTHAC  176 (242)
T ss_dssp             TCEEESCHHHHHTTCSEEEECCTTC---------------TTHHHHHHHHGGGSCTTCEEEECS
T ss_pred             CCEEECCHHHHHhcCCeEEEeeecH---------------HHHHHHHHHHHhhCCCCcEEEecC
Confidence            4778899999999999999874111               223455677777777776554444