Citrus Sinensis ID: 022263

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKRAWKN
Secondary Structure (PSIPRED)
ccccHHHHHHccccccccccccccccccccEEEEccccccHHHHHHHHHHcccccEEEEEEccccccHHHHcccccccccEEEEEccccHHHHcccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccHHHHHHHHHHHHcccHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHHcccccEEEEEEcccHHHHHHHHcccccccEEEEEEcHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHccccHHHcEccEEEcccHHHEEEcHHHcEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccEEEEcccccc
Coil and Loop (DISEMBL)
MRSSVLRSVKTLakpagargyssesvpdrKVAVLGaaggigqpLALLMKLNPLVSRLALydiantpgvaadvgHINTRSevagymgndqlgqaledsdvviipagvprkpgmtrddlfniNAGIVKDLCSAIAKYCPNAIVNmisnpvnstvPIAAEVFKkagtynekklfgvTTLDVVRAKtfyagkanvnvaevnvpvvgghagitilplfsqatpkanlaDEDIKALTKRTQDGGTEVVeakagkgsatLSMAYAGAIFADACLkglngvpdvvECSFVQSTVtelpffaskRAWKN
Flexible Loop (DISEMBL)
mrssvlrsvktlakpagargyssesvpdRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKagtynekklfgvttLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTkrtqdggtevveakagkgsATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTvtelpffaskrawkn
Low Complexity Region (SEG)
MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYagkanvnvaevnvpvvggHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKRAWKN
Disordered region (IsUnstruct)
*****************************KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQAT*********************************ATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFAS******
Disordered Region (DISOPRED)
*****************************KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKRAWK*
Disordered Region (DISEMBL)
********VKTLA************VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKRAWKN
Disordered Region (DISPRO)
****VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKRA***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKRAWKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	300	2.2.26 [Sep-21-2011]
Q9LKA3	341	Malate dehydrogenase 2, m	yes	no	1.0	0.879	0.830	1e-145
P17783	347	Malate dehydrogenase, mit	N/A	no	0.916	0.792	0.905	1e-145
Q9ZP06	341	Malate dehydrogenase 1, m	no	no	1.0	0.879	0.817	1e-143
P83373	339	Malate dehydrogenase, mit	N/A	no	0.976	0.864	0.848	1e-143
P46487	347	Malate dehydrogenase, mit	N/A	no	0.983	0.850	0.867	1e-143
Q43744	341	Malate dehydrogenase, mit	N/A	no	1.0	0.879	0.797	1e-136
Q42686	373	Malate dehydrogenase, mit	N/A	no	0.883	0.710	0.726	1e-110
Q42972	356	Malate dehydrogenase, gly	no	no	0.93	0.783	0.691	1e-107
P46488	356	Malate dehydrogenase, gly	N/A	no	0.966	0.814	0.66	1e-105
P19446	356	Malate dehydrogenase, gly	N/A	no	0.966	0.814	0.65	1e-104

>sp|Q9LKA3|MDHM2_ARATH Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1

 Score =  514 bits (1323), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 250/301 (83%), Positives = 280/301 (93%), Gaps = 1/301 (0%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS ++RS   + +    RG++SESVPDRKV +LGAAGGIGQPL+LLMKLNPLVS L+LY
Sbjct: 2   FRSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRS+V+GYMG+D LG+ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+L  AIAKYCP A+VNMISNPVNSTVPIAAE+FKKAGTY+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           A+TFYAGK++VNVAEVNVPVVGGHAGITILPLFSQA+P+ANL+D+ I+ALTKRTQDGGTE
Sbjct: 182 ARTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQANLSDDLIRALTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK-RAWK 299
           VVEAKAGKGSATLSMAYAGA+FADACLKGLNGVP+VVECSFVQST+TELPFFASK R  K
Sbjct: 242 VVEAKAGKGSATLSMAYAGALFADACLKGLNGVPNVVECSFVQSTITELPFFASKVRLGK 301

Query: 300 N 300
           N
Sbjct: 302 N 302

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|P17783|MDHM_CITLA Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1

 Score =  513 bits (1322), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 249/275 (90%), Positives = 267/275 (97%)

Query: 21  YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE 80
           +++ESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDIA TPGVAADVGH+NTRSE
Sbjct: 27  FATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSE 86

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
           V GY+G +QLG+ALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPNA+
Sbjct: 87  VTGYVGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNAL 146

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPV 200
           +NMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVTTLDVVRAKTFYAGKANV VAEVNVPV
Sbjct: 147 INMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPV 206

Query: 201 VGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA 260
           +GGHAGITILPLFSQATP+ANL+D+ I ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA
Sbjct: 207 IGGHAGITILPLFSQATPRANLSDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA 266

Query: 261 IFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 295
           +FADACLKGLNGVPDVVECSFVQSTVTELPFFASK
Sbjct: 267 LFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 301

Citrullus lanatus (taxid: 3654)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP06|MDHM1_ARATH Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1

 Score =  507 bits (1305), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/301 (81%), Positives = 276/301 (91%), Gaps = 1/301 (0%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS ++RS  +  +    R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LY
Sbjct: 2   FRSMLVRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRSEV GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+LC+AIAKYCP+A++NMISNPVNSTVPIAAE+FKKAG Y+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           A+TFYAGKANV VAEVNVPV+GGHAG+TILPLFSQATP+ANL+ + + ALTKRTQDGGTE
Sbjct: 182 ARTFYAGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK-RAWK 299
           VVEAKAGKGSATLSMAYAGA+FADACLKGLNGVPDV+ECS+VQST+TELPFFASK R  K
Sbjct: 242 VVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQSTITELPFFASKVRLGK 301

Query: 300 N 300
           N
Sbjct: 302 N 302

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P83373|MDHM_FRAAN Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1

 Score =  506 bits (1304), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 253/298 (84%), Positives = 273/298 (91%), Gaps = 5/298 (1%)

Query: 4   SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63
           S++RSV  +A+    RGYSSESVP RKVAVLGAAGGIGQPLALLMKLNPLVS+L+LYDIA
Sbjct: 6   SLIRSVSRVAR----RGYSSESVPQRKVAVLGAAGGIGQPLALLMKLNPLVSQLSLYDIA 61

Query: 64  NTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAG 123
            TPGVAADV HINTRSEV GY G +QLG+ALE  DVVIIPAGVPRKPGMTRDDLFNINAG
Sbjct: 62  GTPGVAADVSHINTRSEVKGYAGEEQLGEALEGCDVVIIPAGVPRKPGMTRDDLFNINAG 121

Query: 124 IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKT 183
           IV+ L +AIAKYCP+AI+NMISNPVNSTVPIA+EV KKAG Y+EKKLFGVTTLDVVRAKT
Sbjct: 122 IVRSLTAAIAKYCPHAIINMISNPVNSTVPIASEVLKKAGVYDEKKLFGVTTLDVVRAKT 181

Query: 184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVE 243
           FYAGKA V VAEVNVPVVGGHAGITILPLFSQATPKANL+D+ IKALTKRTQDGGTEVVE
Sbjct: 182 FYAGKAGVPVAEVNVPVVGGHAGITILPLFSQATPKANLSDDYIKALTKRTQDGGTEVVE 241

Query: 244 AKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK-RAWKN 300
           AKAGKGSATLSMAYAGA+FADACL GLNGVPDVVECS+VQS++TELPFFASK R  KN
Sbjct: 242 AKAGKGSATLSMAYAGALFADACLXGLNGVPDVVECSYVQSSITELPFFASKVRLGKN 299

Fragaria ananassa (taxid: 3747)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P46487|MDHM_EUCGU Malate dehydrogenase, mitochondrial OS=Eucalyptus gunnii GN=MDH PE=2 SV=1

 Score =  506 bits (1303), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 262/302 (86%), Positives = 278/302 (92%), Gaps = 7/302 (2%)

Query: 1   MRSSVLRSVKTLAKPAGAR------GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLV 54
           MR+S+LR +++ +  A  R       Y SESVP+RKVAVLGAAGGIGQPLALLMKLNPLV
Sbjct: 1   MRASMLRLIRSRSSSAAPRPHLLRRAYGSESVPERKVAVLGAAGGIGQPLALLMKLNPLV 60

Query: 55  SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTR 114
           S+LALYDIA TPGVAADVGHINTRSEVAGY+G +QLGQALE SDVVIIPAGVPRKPGMTR
Sbjct: 61  SQLALYDIAGTPGVAADVGHINTRSEVAGYVGEEQLGQALEGSDVVIIPAGVPRKPGMTR 120

Query: 115 DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT 174
           DDLFNINAGIVK LC+AIAKYCPNA+VNMISNPVNSTVPIAAE+FKKAGTYNEKKL GVT
Sbjct: 121 DDLFNINAGIVKSLCTAIAKYCPNAVVNMISNPVNSTVPIAAEIFKKAGTYNEKKLLGVT 180

Query: 175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRT 234
           TLDVVRAKTFYAGKA V V EVNVPVVGGHAGITILPLFSQA PKANLADEDIKALTKRT
Sbjct: 181 TLDVVRAKTFYAGKAKVPVEEVNVPVVGGHAGITILPLFSQAVPKANLADEDIKALTKRT 240

Query: 235 QDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQST-VTELPFFA 293
           QDGGTEVVEAKAGKGSATLSMAYAGA+FADACLKGLNGVPDVVECSFVQS+ +TELPFFA
Sbjct: 241 QDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSSIITELPFFA 300

Query: 294 SK 295
           SK
Sbjct: 301 SK 302

Eucalyptus gunnii (taxid: 3933)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q43744|MDHM_BRANA Malate dehydrogenase, mitochondrial OS=Brassica napus GN=MDH PE=2 SV=1

 Score =  483 bits (1244), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/301 (79%), Positives = 268/301 (89%), Gaps = 1/301 (0%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS+++RS  +  +    R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LY
Sbjct: 2   FRSALVRSSASAKQSLLRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRS+V GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSQVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+L SAIAKYCP+A+VNMISNPVNSTVPIAAE+FKKAG Y+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLWSAIAKYCPHALVNMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
            KT YAGKANV VAEVNVP + GHAG+TILPLFSQATP+A L+ + +   TKRTQDGGTE
Sbjct: 182 VKTSYAGKANVPVAEVNVPAIVGHAGVTILPLFSQATPQAILSGDALTVTTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK-RAWK 299
           V EAKAGKGSATLSMAYAGA+FADACLKGLNGVPDVVECS+VQST+TELPFFASK R  K
Sbjct: 242 VEEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSYVQSTITELPFFASKVRLGK 301

Query: 300 N 300
           N
Sbjct: 302 N 302

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q42686|MDHM_CHLRE Malate dehydrogenase, mitochondrial OS=Chlamydomonas reinhardtii PE=3 SV=1

 Score =  398 bits (1023), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/267 (72%), Positives = 232/267 (86%), Gaps = 2/267 (0%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
           RKVAVLGAAGGIGQPL++LMK+N  VS L+LYDIA TPGVAADV HINT+++V G+   D
Sbjct: 63  RKVAVLGAAGGIGQPLSMLMKMNSQVSSLSLYDIAGTPGVAADVSHINTKAQVKGF-DKD 121

Query: 89  QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV 148
            L +AL   D+VIIPAGVPRKPGMTRDDLF INAGIV+DL +A+ ++CP A++N+ISNPV
Sbjct: 122 GLAEALRGCDLVIIPAGVPRKPGMTRDDLFKINAGIVRDLVTAVGQHCPGAVLNIISNPV 181

Query: 149 NSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGIT 208
           NSTVPIAAE  KK G Y+++K+ GVTTLDVVRAKTFYA K  ++VA V+VPVVGGHAG+T
Sbjct: 182 NSTVPIAAEQLKKMGVYDKRKVMGVTTLDVVRAKTFYAEKNGLDVASVDVPVVGGHAGVT 241

Query: 209 ILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLK 268
           ILPLFSQATPKA ++ E + ALTKRTQDGGTEVV+AKAGKGSATLSMAYA A+FAD+CL+
Sbjct: 242 ILPLFSQATPKATMSAEVLDALTKRTQDGGTEVVQAKAGKGSATLSMAYAAALFADSCLR 301

Query: 269 GLNGVPDVVECSFVQSTVTELPFFASK 295
           GLNG P VVEC++V+STVT+ P+FASK
Sbjct: 302 GLNGAP-VVECTYVESTVTDAPYFASK 327

Chlamydomonas reinhardtii (taxid: 3055)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3

 Score =  388 bits (996), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/279 (69%), Positives = 221/279 (79%)

Query: 17  GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN 76
           G+   +  + P  KVA+LGA+GGIGQPLALLMK+NPLVS L LYD+ NTPGV AD+ H+N
Sbjct: 33  GSNCRAKGAAPGFKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMN 92

Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           T + V G++G  QL  AL   D+VIIPAGVPRKPGMTRDDLFNINAGIV+ LC  IAK C
Sbjct: 93  TGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC 152

Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV 196
           PNAIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVTTLDVVRA TF A    ++  +V
Sbjct: 153 PNAIVNVISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGLDPRDV 212

Query: 197 NVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           NVPV+GGHAG+TILPL SQ  P  +   E+I  LT R Q+GGTEVVEAKAG GSATLSMA
Sbjct: 213 NVPVIGGHAGVTILPLLSQVNPPCSFTSEEISYLTTRIQNGGTEVVEAKAGAGSATLSMA 272

Query: 257 YAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 295
           YA + FADACL+GL G   +VECSFV S VTELPFFASK
Sbjct: 273 YAASKFADACLRGLRGDAGIVECSFVASQVTELPFFASK 311

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1

 Score =  382 bits (980), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/300 (66%), Positives = 227/300 (75%), Gaps = 10/300 (3%)

Query: 2   RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61
            SSVLR     AK  GA G+        KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD
Sbjct: 27  ESSVLRRANCRAK-GGAPGF--------KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYD 77

Query: 62  IANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
           + N PGV AD+ H++T + V G++G  QL +AL   D+V+IPAGVPRKPGMTRDDLF IN
Sbjct: 78  VVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPAGVPRKPGMTRDDLFKIN 137

Query: 122 AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
           AGIVK LC  IAK CP AIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA
Sbjct: 138 AGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRA 197

Query: 182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
            TF A    ++  +VNVPVVGGHAG+TILPL SQ  P ++   E+I  LT R Q+GGTEV
Sbjct: 198 NTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQEEINYLTDRIQNGGTEV 257

Query: 242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK-RAWKN 300
           VEAKAG GSATLSMAYA   FADACL+GL G   VVEC+FV S VTELPFFA+K R  +N
Sbjct: 258 VEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVSSQVTELPFFATKVRLGRN 317

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1

 Score =  378 bits (970), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/300 (65%), Positives = 225/300 (75%), Gaps = 10/300 (3%)

Query: 2   RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61
            SS LR     AK  GA G+        KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD
Sbjct: 27  ESSALRRANCRAK-GGAPGF--------KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYD 77

Query: 62  IANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
           + N PGV AD+ H++T + V G++G  QL  AL   D++I+PAGVPRKPGMTRDDLF IN
Sbjct: 78  VVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKIN 137

Query: 122 AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
           AGIVK LC  IAK CP AIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA
Sbjct: 138 AGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRA 197

Query: 182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
            TF A    ++  +V+VPVVGGHAG+TILPL SQ  P ++   E+I  LT R Q+GGTEV
Sbjct: 198 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEV 257

Query: 242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK-RAWKN 300
           VEAKAG GSATLSMAYA   FADACL+GL G   V+EC+FV S VTELPFFASK R  +N
Sbjct: 258 VEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRN 317

Citrullus lanatus (taxid: 3654)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
255566555	345	malate dehydrogenase, putative [Ricinus	1.0	0.869	0.875	1e-148
449438883	347	PREDICTED: malate dehydrogenase, mitocho	0.923	0.798	0.913	1e-144
224114557	341	predicted protein [Populus trichocarpa]	0.986	0.868	0.857	1e-143
15232468	341	malate dehydrogenase 2 [Arabidopsis thal	1.0	0.879	0.830	1e-143
126896	347	RecName: Full=Malate dehydrogenase, mito	0.916	0.792	0.905	1e-143
350536645	346	mitochondrial malate dehydrogenase [Sola	1.0	0.867	0.839	1e-143
21388544	346	putative mitochondrial NAD-dependent mal	1.0	0.867	0.833	1e-143
255563084	343	malate dehydrogenase, putative [Ricinus	0.943	0.825	0.880	1e-143
145332399	316	malate dehydrogenase 2 [Arabidopsis thal	0.983	0.933	0.837	1e-143
5929964	345	malate dehydrogenase [Glycine max]	0.983	0.855	0.849	1e-143

>gi|255566555|ref|XP_002524262.1| malate dehydrogenase, putative [Ricinus communis] gi|223536453|gb|EEF38101.1| malate dehydrogenase, putative [Ricinus communis]

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 268/306 (87%), Positives = 280/306 (91%), Gaps = 6/306 (1%)

Query: 1   MRSSVLRSVKTLAKPAGA-----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS 55
           MRSS+ RSVK L   + +     RGY+SE+VPDRKVAVLGAAGGIGQPLALLMKLNPLVS
Sbjct: 1   MRSSLFRSVKALGSTSSSSHLLRRGYASEAVPDRKVAVLGAAGGIGQPLALLMKLNPLVS 60

Query: 56  RLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRD 115
            LALYDIANTPGVAADV HINTRS+V GY+G DQLG+ALE SDVVIIPAGVPRKPGMTRD
Sbjct: 61  NLALYDIANTPGVAADVSHINTRSDVKGYVGEDQLGKALEGSDVVIIPAGVPRKPGMTRD 120

Query: 116 DLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT 175
           DLFNINAGIVK LC AIAKYCPNA+VNMISNPVNSTVPIAAEVFKKAGTY+EK+LFGVTT
Sbjct: 121 DLFNINAGIVKGLCEAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTT 180

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQ 235
           LDVVRAKTFYAGKA V VAEVNVPVVGGHAGITILPL SQATPKANL DE+I ALTKRTQ
Sbjct: 181 LDVVRAKTFYAGKAKVPVAEVNVPVVGGHAGITILPLLSQATPKANLPDEEIVALTKRTQ 240

Query: 236 DGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 295
           DGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK
Sbjct: 241 DGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 300

Query: 296 -RAWKN 300
            R  KN
Sbjct: 301 VRLGKN 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438883|ref|XP_004137217.1| PREDICTED: malate dehydrogenase, mitochondrial-like [Cucumis sativus] gi|449483204|ref|XP_004156521.1| PREDICTED: malate dehydrogenase, mitochondrial-like [Cucumis sativus]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 253/277 (91%), Positives = 266/277 (96%)

Query: 19  RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR 78
           R +++ESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDI  TPGVAADVGH+NTR
Sbjct: 25  RTFATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIGATPGVAADVGHVNTR 84

Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
           SEV GYMG +QLG+ALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPN
Sbjct: 85  SEVTGYMGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPN 144

Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNV 198
           A+VNMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVTTLDVVRAKTFYAGKANV VAEVNV
Sbjct: 145 ALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNV 204

Query: 199 PVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYA 258
           PVVGGHAGITILPLFSQATPKANL D+ I ALTKRTQDGGTEVVEAKAGKGSATLSMAYA
Sbjct: 205 PVVGGHAGITILPLFSQATPKANLTDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMAYA 264

Query: 259 GAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 295
           GA+FADACLKGLNGVPDVVECSFVQSTVTELPFFASK
Sbjct: 265 GALFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 301

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114557|ref|XP_002316794.1| predicted protein [Populus trichocarpa] gi|118484579|gb|ABK94163.1| unknown [Populus trichocarpa] gi|222859859|gb|EEE97406.1| predicted protein [Populus trichocarpa]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/301 (85%), Positives = 276/301 (91%), Gaps = 5/301 (1%)

Query: 5   VLRSVKTLAKPAGA----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
           +LRS+K+LA    +    RGY+SE+VPDRKVAVLGAAGGIGQPLALLMKLNPLVS LALY
Sbjct: 2   MLRSIKSLATSPSSHILRRGYASEAVPDRKVAVLGAAGGIGQPLALLMKLNPLVSSLALY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADV HINTRSEV+GY G  +LG+ALE +DVVIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVSHINTRSEVSGYSGEAELGKALEGADVVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK LC AIAKYCP+A+VNMISNPVNSTVPIAAEVFKKAGTY+ K+LFGVTTLDVVR
Sbjct: 122 NAGIVKGLCQAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDPKRLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           AKTFYAGKA V VAEVNVPVVGGHAGITILPLFSQATPKANL+D +I ALTKRTQDGGTE
Sbjct: 182 AKTFYAGKAKVPVAEVNVPVVGGHAGITILPLFSQATPKANLSDAEITALTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK-RAWK 299
           VVEAKAGKGSATLSMAYAGAIFADACLKGLNG PDVVECS+VQST+TELPFFASK R  K
Sbjct: 242 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGAPDVVECSYVQSTITELPFFASKVRLGK 301

Query: 300 N 300
           N
Sbjct: 302 N 302

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232468|ref|NP_188120.1| malate dehydrogenase 2 [Arabidopsis thaliana] gi|75311246|sp|Q9LKA3.1|MDHM2_ARATH RecName: Full=Malate dehydrogenase 2, mitochondrial; AltName: Full=mNAD-MDH 2; Flags: Precursor gi|8777485|dbj|BAA97065.1| NAD-dependent malate dehydrogenase [Arabidopsis thaliana] gi|15010582|gb|AAK73950.1| AT3g15020/K15M2_16 [Arabidopsis thaliana] gi|20147389|gb|AAM10404.1| AT3g15020/K15M2_16 [Arabidopsis thaliana] gi|332642083|gb|AEE75604.1| malate dehydrogenase 2 [Arabidopsis thaliana]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/301 (83%), Positives = 280/301 (93%), Gaps = 1/301 (0%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS ++RS   + +    RG++SESVPDRKV +LGAAGGIGQPL+LLMKLNPLVS L+LY
Sbjct: 2   FRSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRS+V+GYMG+D LG+ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+L  AIAKYCP A+VNMISNPVNSTVPIAAE+FKKAGTY+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           A+TFYAGK++VNVAEVNVPVVGGHAGITILPLFSQA+P+ANL+D+ I+ALTKRTQDGGTE
Sbjct: 182 ARTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQANLSDDLIRALTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK-RAWK 299
           VVEAKAGKGSATLSMAYAGA+FADACLKGLNGVP+VVECSFVQST+TELPFFASK R  K
Sbjct: 242 VVEAKAGKGSATLSMAYAGALFADACLKGLNGVPNVVECSFVQSTITELPFFASKVRLGK 301

Query: 300 N 300
           N
Sbjct: 302 N 302

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126896|sp|P17783.1|MDHM_CITLA RecName: Full=Malate dehydrogenase, mitochondrial; Flags: Precursor gi|18297|emb|CAA35239.1| unnamed protein product [Citrullus lanatus subsp. vulgaris]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 249/275 (90%), Positives = 267/275 (97%)

Query: 21  YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE 80
           +++ESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDIA TPGVAADVGH+NTRSE
Sbjct: 27  FATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSE 86

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
           V GY+G +QLG+ALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPNA+
Sbjct: 87  VTGYVGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNAL 146

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPV 200
           +NMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVTTLDVVRAKTFYAGKANV VAEVNVPV
Sbjct: 147 INMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPV 206

Query: 201 VGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA 260
           +GGHAGITILPLFSQATP+ANL+D+ I ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA
Sbjct: 207 IGGHAGITILPLFSQATPRANLSDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA 266

Query: 261 IFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 295
           +FADACLKGLNGVPDVVECSFVQSTVTELPFFASK
Sbjct: 267 LFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 301

Source: Citrullus lanatus subsp. vulgaris

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536645|ref|NP_001234001.1| mitochondrial malate dehydrogenase [Solanum lycopersicum] gi|52139816|gb|AAU29198.1| mitochondrial malate dehydrogenase [Solanum lycopersicum]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 257/306 (83%), Positives = 278/306 (90%), Gaps = 6/306 (1%)

Query: 1   MRSSVLRSVKTLAKPAGA-----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS 55
           MR+S+L+S+   +  AGA     RG++S S P+RKVAVLGAAGGIGQPL+LLMKLNPLVS
Sbjct: 1   MRTSMLKSIVRRSSTAGASYVSRRGFASGSAPERKVAVLGAAGGIGQPLSLLMKLNPLVS 60

Query: 56  RLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRD 115
            L+LYDIA TPGVAADV HINTRSEVAG+ G +QLGQALE +DVVIIPAGVPRKPGMTRD
Sbjct: 61  SLSLYDIAGTPGVAADVSHINTRSEVAGFAGEEQLGQALEGADVVIIPAGVPRKPGMTRD 120

Query: 116 DLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT 175
           DLFNINAGIVK LC+AIAKYCPNA+VNMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVT 
Sbjct: 121 DLFNINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTM 180

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQ 235
           LDVVRAKTFYAGKA VNVAEVN+PVVGGHAGITILPLFSQATPKANL+ E+I ALTKRTQ
Sbjct: 181 LDVVRAKTFYAGKAKVNVAEVNLPVVGGHAGITILPLFSQATPKANLSYEEIVALTKRTQ 240

Query: 236 DGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 295
           DGGTEVVEAKAGKGS TLS+AYAGAIFADACLKGLNGVPDVVEC+FVQS VTELPFFASK
Sbjct: 241 DGGTEVVEAKAGKGSXTLSIAYAGAIFADACLKGLNGVPDVVECAFVQSNVTELPFFASK 300

Query: 296 -RAWKN 300
            R  KN
Sbjct: 301 VRLGKN 306

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21388544|emb|CAD33240.1| putative mitochondrial NAD-dependent malate dehydrogenase [Solanum tuberosum]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 255/306 (83%), Positives = 278/306 (90%), Gaps = 6/306 (1%)

Query: 1   MRSSVLRSVKTLAKPAGA-----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS 55
           MR+S+L+S+   +  AG      RG++S S P+RKVAVLGAAGGIGQPL+LLMKLNPLVS
Sbjct: 1   MRTSMLKSIVRRSSTAGESYVSRRGFASGSAPERKVAVLGAAGGIGQPLSLLMKLNPLVS 60

Query: 56  RLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRD 115
            L+LYDIA TPGVAADV HINTRSEV G+ G +QLG+ALE +D+VIIPAGVPRKPGMTRD
Sbjct: 61  SLSLYDIAGTPGVAADVSHINTRSEVVGFAGEEQLGKALEGADIVIIPAGVPRKPGMTRD 120

Query: 116 DLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT 175
           DLFNINAGIVK LC+AIAKYCPNA+VNMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVT 
Sbjct: 121 DLFNINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTM 180

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQ 235
           LDVVRAKTFYAGKA VNVAEVN+PVVGGHAGITILPLFSQATPKANL++E+I ALTKRTQ
Sbjct: 181 LDVVRAKTFYAGKAKVNVAEVNLPVVGGHAGITILPLFSQATPKANLSNEEIVALTKRTQ 240

Query: 236 DGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 295
           DGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVEC+FVQS VTELPFFASK
Sbjct: 241 DGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECAFVQSNVTELPFFASK 300

Query: 296 -RAWKN 300
            R  KN
Sbjct: 301 VRLGKN 306

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563084|ref|XP_002522546.1| malate dehydrogenase, putative [Ricinus communis] gi|223538237|gb|EEF39846.1| malate dehydrogenase, putative [Ricinus communis]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 251/285 (88%), Positives = 270/285 (94%), Gaps = 2/285 (0%)

Query: 18  ARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT 77
           AR YSSES P+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LYDIANTPGVAADV HIN+
Sbjct: 19  ARSYSSESQPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVSHINS 78

Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
           R++V+GY G +QLGQALE SD+VIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCP
Sbjct: 79  RAQVSGYAGEEQLGQALEGSDIVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCP 138

Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN 197
           NA+VNMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVTTLDVVRAKTFY GKA V VAEV+
Sbjct: 139 NALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYGGKAKVAVAEVD 198

Query: 198 VPVVGGHAGITILPLFSQATPKAN-LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           VPVVGGHAGITILPLFSQATPK+N L++EDIKALTKRTQDGGTEVVEAKAGKGSATLSMA
Sbjct: 199 VPVVGGHAGITILPLFSQATPKSNGLSNEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 258

Query: 257 YAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK-RAWKN 300
           YAGA+FADACLKGLNGVPD+VECSFVQS+VTELPFFASK R  KN
Sbjct: 259 YAGAVFADACLKGLNGVPDIVECSFVQSSVTELPFFASKVRLGKN 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145332399|ref|NP_001078156.1| malate dehydrogenase 2 [Arabidopsis thaliana] gi|332642084|gb|AEE75605.1| malate dehydrogenase 2 [Arabidopsis thaliana]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 247/295 (83%), Positives = 277/295 (93%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS ++RS   + +    RG++SESVPDRKV +LGAAGGIGQPL+LLMKLNPLVS L+LY
Sbjct: 2   FRSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRS+V+GYMG+D LG+ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+L  AIAKYCP A+VNMISNPVNSTVPIAAE+FKKAGTY+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           A+TFYAGK++VNVAEVNVPVVGGHAGITILPLFSQA+P+ANL+D+ I+ALTKRTQDGGTE
Sbjct: 182 ARTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQANLSDDLIRALTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 295
           VVEAKAGKGSATLSMAYAGA+FADACLKGLNGVP+VVECSFVQST+TELPFFASK
Sbjct: 242 VVEAKAGKGSATLSMAYAGALFADACLKGLNGVPNVVECSFVQSTITELPFFASK 296

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5929964|gb|AAD56659.1| malate dehydrogenase [Glycine max]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 254/299 (84%), Positives = 276/299 (92%), Gaps = 4/299 (1%)

Query: 1   MRSSVLRSVKTLAKPAGA----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSR 56
           M+ S+LRS+ + A    +    RGY+SE VP+RKVAVLGAAGGIGQPL+LLMKLNPLVS 
Sbjct: 2   MKPSMLRSLHSAATRGASHLFRRGYASEPVPERKVAVLGAAGGIGQPLSLLMKLNPLVSS 61

Query: 57  LALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDD 116
           L+LYDIA TPGVAAD+ HINTRSEV GY G+++LG+ALE +DVVIIPAGVPRKPGMTRDD
Sbjct: 62  LSLYDIAGTPGVAADISHINTRSEVVGYQGDEELGKALEGADVVIIPAGVPRKPGMTRDD 121

Query: 117 LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL 176
           LFNINAGIVK LC+AIAKYCP+A+VNMISNPVNSTVPIAAEVFKKAGTY+EK+LFGVTTL
Sbjct: 122 LFNINAGIVKTLCTAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTL 181

Query: 177 DVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQD 236
           DVVRAKTFYAGKANV VA VNVPVVGGHAGITILPLFSQATPKANL D+ IKALTKRTQD
Sbjct: 182 DVVRAKTFYAGKANVPVAGVNVPVVGGHAGITILPLFSQATPKANLDDDVIKALTKRTQD 241

Query: 237 GGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 295
           GGTEVVEAKAGKGSATLSMAYAGA+FADACLKGLNGVPDVVECSFVQSTVTELPFFASK
Sbjct: 242 GGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
TAIR|locus:2086340	341	mMDH2 "mitochondrial malate de	0.996	0.876	0.78	6.7e-120
TAIR|locus:2009605	341	mMDH1 "mitochondrial malate de	0.996	0.876	0.766	2e-118
TAIR|locus:2062240	354	PMDH1 "peroxisomal NAD-malate	0.896	0.759	0.661	1.6e-88
TAIR|locus:2079177	403	MDH "malate dehydrogenase" [Ar	0.993	0.739	0.591	3e-85
TAIR|locus:2144781	363	PMDH2 "peroxisomal NAD-malate	0.866	0.716	0.661	8e-85
FB|FBgn0262559	336	Mdh2 "Malate dehydrogenase 2"	0.963	0.860	0.594	1e-84
UNIPROTKB|I3LP41	338	MDH2 "Malate dehydrogenase" [S	0.953	0.846	0.577	1.3e-82
MGI|MGI:97050	338	Mdh2 "malate dehydrogenase 2,	0.953	0.846	0.584	1.3e-82
UNIPROTKB|P00346	338	MDH2 "Malate dehydrogenase, mi	0.953	0.846	0.577	1.7e-82
RGD|619719	338	Mdh2 "malate dehydrogenase 2,	0.953	0.846	0.577	2.8e-82

TAIR|locus:2086340 mMDH2 "mitochondrial malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1180 (420.4 bits), Expect = 6.7e-120, P = 6.7e-120
 Identities = 234/300 (78%), Positives = 262/300 (87%)

Query:     2 RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61
             RS ++RS   + +    RG++SESVPDRKV +LGAAGGIGQPL+LLMKLNPLVS L+LYD
Sbjct:     3 RSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLYD 62

Query:    62 IANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
             IANTPGVAADVGHINTRS+V+GYMG+D LG+ALE +D+VIIPAGVPRKPGMTRDDLFNIN
Sbjct:    63 IANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNIN 122

Query:   122 AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
             AGIVK+L  AIAKYCP A+VNMISNPVNSTVPIAAE+FKKAGTY+EKKLFGVTTLDVVRA
Sbjct:   123 AGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVRA 182

Query:   182 KTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
             +TFY                  HAGITILPLFSQA+P+ANL+D+ I+ALTKRTQDGGTEV
Sbjct:   183 RTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQANLSDDLIRALTKRTQDGGTEV 242

Query:   242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK-RAWKN 300
             VEAKAGKGSATLSMAYAGA+FADACLKGLNGVP+VVECSFVQST+TELPFFASK R  KN
Sbjct:   243 VEAKAGKGSATLSMAYAGALFADACLKGLNGVPNVVECSFVQSTITELPFFASKVRLGKN 302

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IGI

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

TAIR|locus:2009605 mMDH1 "mitochondrial malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
 Identities = 230/300 (76%), Positives = 259/300 (86%)

Query:     2 RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61
             RS ++RS  +  +    R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LYD
Sbjct:     3 RSMLVRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYD 62

Query:    62 IANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
             IANTPGVAADVGHINTRSEV GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNIN
Sbjct:    63 IANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNIN 122

Query:   122 AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
             AGIVK+LC+AIAKYCP+A++NMISNPVNSTVPIAAE+FKKAG Y+EKKLFGVTTLDVVRA
Sbjct:   123 AGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRA 182

Query:   182 KTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
             +TFY                  HAG+TILPLFSQATP+ANL+ + + ALTKRTQDGGTEV
Sbjct:   183 RTFYAGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTEV 242

Query:   242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK-RAWKN 300
             VEAKAGKGSATLSMAYAGA+FADACLKGLNGVPDV+ECS+VQST+TELPFFASK R  KN
Sbjct:   243 VEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQSTITELPFFASKVRLGKN 302

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IMP

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

TAIR|locus:2062240 PMDH1 "peroxisomal NAD-malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
 Identities = 178/269 (66%), Positives = 205/269 (76%)

Query:    27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG 86
             P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+AN PGV AD+ H++T + V G++G
Sbjct:    41 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLG 100

Query:    87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
               QL +AL   D+VIIPAGVPRKPGMTRDDLFNINAGIV+ L  AIAK CP AIVN+ISN
Sbjct:   101 QPQLEEALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISN 160

Query:   147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
             PVNSTVPIAAEVFKKAGT++ KKL GVT LDVVRA TF                   HAG
Sbjct:   161 PVNSTVPIAAEVFKKAGTFDPKKLMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAG 220

Query:   207 ITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC 266
             +TILPL SQ  P  +   ++I+ LT R Q+GGTEVVEAKAG GSATLSMAYA   FADAC
Sbjct:   221 VTILPLLSQVKPPCSFTQKEIEYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADAC 280

Query:   267 LKGLNGVPDVVECSFVQSTVTELPFFASK 295
             L+GL G  ++VEC++V S VTELPFFASK
Sbjct:   281 LRGLRGDANIVECAYVASHVTELPFFASK 309

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2079177 MDH "malate dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
 Identities = 177/299 (59%), Positives = 213/299 (71%)

Query:     3 SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62
             +  LR   T A+ +  + Y  +     KVAVLGAAGGIGQPL+LL+K++PLVS L LYDI
Sbjct:    57 AKTLRGSVTKAQTSDKKPYGFKINASYKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDI 116

Query:    63 ANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINA 122
             AN  GVAAD+ H NT S+V  + G  +L   L+D +VV+IPAGVPRKPGMTRDDLFNINA
Sbjct:   117 ANVKGVAADLSHCNTPSQVRDFTGPSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINA 176

Query:   123 GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
              IVK L  A+A+ CPNA +++ISNPVNSTVPIAAEV KK G Y+ KKLFGVTTLDVVRA 
Sbjct:   177 NIVKTLVEAVAENCPNAFIHIISNPVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRAN 236

Query:   183 TFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVV 242
             TF                   HAGITILPL S+  P  N  DE+I+ LT R Q+ GTEVV
Sbjct:   237 TFVSQKKNLKLIDVDVPVIGGHAGITILPLLSKTKPSVNFTDEEIQELTVRIQNAGTEVV 296

Query:   243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK-RAWKN 300
             +AKAG GSATLSMAYA A F ++ L+ L+G  DV ECSFV+ST+T+LPFFAS+ +  KN
Sbjct:   297 DAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSFVESTLTDLPFFASRVKIGKN 355

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2144781 PMDH2 "peroxisomal NAD-malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 172/260 (66%), Positives = 195/260 (75%)

Query:    27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG 86
             P  KVA+LGAAGGIGQ L+LLMK+NPLVS L LYD+ N PGV ADV H++T + V G++G
Sbjct:    41 PGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLG 100

Query:    87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
               QL  AL   D+VIIPAG+PRKPGMTRDDLF INAGIVK LC  +AK CPNAIVN+ISN
Sbjct:   101 AKQLEDALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISN 160

Query:   147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
             PVNSTVPIAAEVFKKAGTY+ KKL GVTTLDV RA TF                   HAG
Sbjct:   161 PVNSTVPIAAEVFKKAGTYDPKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAG 220

Query:   207 ITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC 266
             +TILPL SQ  P ++   ++I+ LT R Q+GGTEVVEAKAG GSATLSMAYA A FADAC
Sbjct:   221 VTILPLLSQVKPPSSFTPQEIEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADAC 280

Query:   267 LKGLNGVPDVVECSFVQSTV 286
             L+GL G  +VVECSFV S V
Sbjct:   281 LRGLRGDANVVECSFVASQV 300

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0048046 "apoplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0042579 "microbody" evidence=ISS

FB|FBgn0262559 Mdh2 "Malate dehydrogenase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
 Identities = 173/291 (59%), Positives = 218/291 (74%)

Query:     5 VLRSV-KTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63
             +L+ V K LA   G R +S     + KV V GAAGGIGQPL+LL+K NPLV+ LALYDI 
Sbjct:     1 MLKQVTKQLALQ-GVRTFSVGQQNNYKVTVCGAAGGIGQPLSLLLKQNPLVTDLALYDIV 59

Query:    64 NTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAG 123
             +TPGVAAD+ HI+T+S+ AG++G DQLG +L+ SDVV+IPAGVPRKPGMTRDDLFN+NAG
Sbjct:    60 HTPGVAADLSHIDTKSKTAGFIGADQLGDSLKGSDVVVIPAGVPRKPGMTRDDLFNVNAG 119

Query:   124 IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKT 183
             I+KD+ ++IAK CP A+V +I+NPVN+ VPIAAE+ KKAG Y+ K+LFGV+TLDVVRA+ 
Sbjct:   120 IIKDISNSIAKNCPKALVAIITNPVNTCVPIAAEILKKAGVYDPKRLFGVSTLDVVRARA 179

Query:   184 FYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVE 243
             F                   H+G+TILP+ SQ+ P      + I+ LT R Q+ GTEVV+
Sbjct:   180 FIGHALGVDPQTVQIPVIGGHSGVTILPVLSQSQPLFKGNQDTIEKLTVRIQEAGTEVVK 239

Query:   244 AKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFAS 294
             AKAG GSATLSMAYAGA FA + LKGLNG  +V+ECS+VQSTVTE  FF++
Sbjct:   240 AKAGAGSATLSMAYAGARFAGSLLKGLNGEKNVIECSYVQSTVTEATFFST 290

GO:0005739 "mitochondrion" evidence=IDA;TAS

GO:0030060 "L-malate dehydrogenase activity" evidence=ISS;TAS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035070 "salivary gland histolysis" evidence=IMP

GO:0016615 "malate dehydrogenase activity" evidence=IDA

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0035209 "pupal development" evidence=IMP

UNIPROTKB|I3LP41 MDH2 "Malate dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 167/289 (57%), Positives = 208/289 (71%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+PAGA   R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPAGAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP+A++ +ISNPVNST+PI AEVFKK G YN  K+FGVTTLD+VRA  F 
Sbjct:   122 ATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFV 181

Query:   186 XXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
                               HAG TI+PL SQ TPK +   + +  LT R Q+ GTEVV+AK
Sbjct:   182 AELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAK 241

Query:   246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFAS 294
             AG GSATLSMAYAGA F  + +  +NG   VVECSFV+S  T+ P+F++
Sbjct:   242 AGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFST 290

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:97050 Mdh2 "malate dehydrogenase 2, NAD (mitochondrial)" [Mus musculus (taxid:10090)]

 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 169/289 (58%), Positives = 207/289 (71%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+PAGA   R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPAGAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP A+V +I+NPVNST+PI AEVFKK G YN  K+FGVTTLD+VRA TF 
Sbjct:   122 ATLTAACAQHCPEAMVCIIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFV 181

Query:   186 XXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
                               HAG TI+PL SQ TPK +   + +  LT R Q+ GTEVV+AK
Sbjct:   182 AELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAK 241

Query:   246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFAS 294
             AG GSATLSMAYAGA F  + +  +NG   VVECSFVQS  TE  +F++
Sbjct:   242 AGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVQSKETECTYFST 290

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;ISA;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=ISO

GO:0006107 "oxaloacetate metabolic process" evidence=ISO

GO:0006108 "malate metabolic process" evidence=ISO;ISA

GO:0006475 "internal protein amino acid acetylation" evidence=ISO

GO:0006734 "NADH metabolic process" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=ISO;ISA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=ISO;IDA

GO:0043621 "protein self-association" evidence=ISO

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0046554 "malate dehydrogenase (NADP+) activity" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISA;IDA

UNIPROTKB|P00346 MDH2 "Malate dehydrogenase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
 Identities = 167/289 (57%), Positives = 207/289 (71%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+PAGA   R +S+    + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPAGAALRRSFSTSXQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP+A++ +ISNPVNST+PI AEVFKK G YN  K+FGVTTLD+VRA  F 
Sbjct:   122 ATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFV 181

Query:   186 XXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
                               HAG TI+PL SQ TPK +   + +  LT R Q+ GTEVV+AK
Sbjct:   182 AELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAK 241

Query:   246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFAS 294
             AG GSATLSMAYAGA F  + +  +NG   VVECSFV+S  T+ P+F++
Sbjct:   242 AGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFST 290

GO:0006475 "internal protein amino acid acetylation" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

RGD|619719 Mdh2 "malate dehydrogenase 2, NAD (mitochondrial)" [Rattus norvegicus (taxid:10116)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 167/289 (57%), Positives = 206/289 (71%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+P GA   R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPVGAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP A++ +ISNPVNST+PI AEVFKK G YN  K+FGVTTLD+VRA TF 
Sbjct:   122 ATLTAACAQHCPEAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFV 181

Query:   186 XXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
                               HAG TI+PL SQ TPK +   + +  LT R Q+ GTEVV+AK
Sbjct:   182 AELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAK 241

Query:   246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFAS 294
             AG GSATLSMAYAGA F  + +  +NG   V+ECSFVQS  TE  +F++
Sbjct:   242 AGAGSATLSMAYAGARFVFSLVDAMNGKEGVIECSFVQSKETECTYFST 290

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006099 "tricarboxylic acid cycle" evidence=IDA

GO:0006107 "oxaloacetate metabolic process" evidence=IDA

GO:0006108 "malate metabolic process" evidence=ISO;IDA

GO:0006475 "internal protein amino acid acetylation" evidence=ISO;ISS

GO:0006734 "NADH metabolic process" evidence=IDA

GO:0016615 "malate dehydrogenase activity" evidence=IDA

GO:0030060 "L-malate dehydrogenase activity" evidence=ISO;IDA

GO:0043621 "protein self-association" evidence=IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0046554 "malate dehydrogenase (NADP+) activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q43744	MDHM_BRANA	1, ., 1, ., 1, ., 3, 7	0.7973	1.0	0.8797	N/A	no
Q0HZ38	MDH_SHESR	1, ., 1, ., 1, ., 3, 7	0.5730	0.8766	0.8456	yes	no
Q5NVR2	MDHM_PONAB	1, ., 1, ., 1, ., 3, 7	0.6153	0.9433	0.8372	yes	no
A1S3C4	MDH_SHEAM	1, ., 1, ., 1, ., 3, 7	0.5955	0.8766	0.8456	yes	no
P08249	MDHM_MOUSE	1, ., 1, ., 1, ., 3, 7	0.6223	0.9433	0.8372	yes	no
B5XSQ7	MDH_KLEP3	1, ., 1, ., 1, ., 3, 7	0.5692	0.8766	0.8429	yes	no
P46487	MDHM_EUCGU	1, ., 1, ., 1, ., 3, 7	0.8675	0.9833	0.8501	N/A	no
P83373	MDHM_FRAAN	1, ., 1, ., 1, ., 3, 7	0.8489	0.9766	0.8643	N/A	no
Q9LKA3	MDHM2_ARATH	1, ., 1, ., 1, ., 3, 7	0.8305	1.0	0.8797	yes	no
A3QB91	MDH_SHELP	1, ., 1, ., 1, ., 3, 7	0.5767	0.8766	0.8456	yes	no
P46488	MDHG_CUCSA	1, ., 1, ., 1, ., 3, 7	0.66	0.9666	0.8146	N/A	no
P17783	MDHM_CITLA	1, ., 1, ., 1, ., 3, 7	0.9054	0.9166	0.7925	N/A	no
B4F2A1	MDH_PROMH	1, ., 1, ., 1, ., 3, 7	0.5729	0.8966	0.8621	yes	no
Q9ZP06	MDHM1_ARATH	1, ., 1, ., 1, ., 3, 7	0.8172	1.0	0.8797	no	no
Q8DEC2	MDH_VIBVU	1, ., 1, ., 1, ., 3, 7	0.5955	0.8733	0.8451	yes	no
Q32LG3	MDHM_BOVIN	1, ., 1, ., 1, ., 3, 7	0.6153	0.9433	0.8372	yes	no
A4YAE8	MDH_SHEPC	1, ., 1, ., 1, ., 3, 7	0.5730	0.8766	0.8456	yes	no
Q7MP97	MDH_VIBVY	1, ., 1, ., 1, ., 3, 7	0.5955	0.8733	0.8451	yes	no
A8H0U0	MDH_SHEPA	1, ., 1, ., 1, ., 3, 7	0.5767	0.8766	0.8456	yes	no
Q0HEW2	MDH_SHESM	1, ., 1, ., 1, ., 3, 7	0.5730	0.8766	0.8456	yes	no
B0TUH8	MDH_SHEHH	1, ., 1, ., 1, ., 3, 7	0.5805	0.8766	0.8456	yes	no
P82177	MDH_SHEON	1, ., 1, ., 1, ., 3, 7	0.5730	0.8766	0.8456	yes	no
A6TEQ3	MDH_KLEP7	1, ., 1, ., 1, ., 3, 7	0.5730	0.8766	0.8429	yes	no
Q9KUT3	MDH_VIBCH	1, ., 1, ., 1, ., 3, 7	0.5955	0.8766	0.8456	yes	no
Q7MYW9	MDH_PHOLL	1, ., 1, ., 1, ., 3, 7	0.5693	0.8966	0.8621	yes	no
O02640	MDHM_CAEEL	1, ., 1, ., 1, ., 3, 7	0.5655	0.9466	0.8328	yes	no
Q9Y7R8	MDHM_SCHPO	1, ., 1, ., 1, ., 3, 7	0.5551	0.9166	0.8064	yes	no
P40926	MDHM_HUMAN	1, ., 1, ., 1, ., 3, 7	0.6118	0.9433	0.8372	yes	no
B1KGG7	MDH_SHEWM	1, ., 1, ., 1, ., 3, 7	0.5805	0.8766	0.8456	yes	no
P17505	MDHM_YEAST	1, ., 1, ., 1, ., 3, 7	0.5587	0.9166	0.8233	yes	no
P04636	MDHM_RAT	1, ., 1, ., 1, ., 3, 7	0.6153	0.9433	0.8372	yes	no
P19446	MDHG_CITLA	1, ., 1, ., 1, ., 3, 7	0.65	0.9666	0.8146	N/A	no
Q42686	MDHM_CHLRE	1, ., 1, ., 1, ., 3, 7	0.7265	0.8833	0.7104	N/A	no
A0L113	MDH_SHESA	1, ., 1, ., 1, ., 3, 7	0.5767	0.8766	0.8456	yes	no
Q12R11	MDH_SHEDO	1, ., 1, ., 1, ., 3, 7	0.5842	0.8766	0.8456	yes	no
P00346	MDHM_PIG	1, ., 1, ., 1, ., 3, 7	0.6118	0.9433	0.8372	yes	no
B8EB55	MDH_SHEB2	1, ., 1, ., 1, ., 3, 7	0.5692	0.8766	0.8456	yes	no
A1RFX8	MDH_SHESW	1, ., 1, ., 1, ., 3, 7	0.5730	0.8766	0.8456	yes	no
A7MWD3	MDH_VIBHB	1, ., 1, ., 1, ., 3, 7	0.5842	0.8766	0.8456	yes	no
B7VID0	MDH_VIBSL	1, ., 1, ., 1, ., 3, 7	0.5842	0.8766	0.8456	yes	no
Q87SU7	MDH_VIBPA	1, ., 1, ., 1, ., 3, 7	0.5767	0.8766	0.8456	yes	no
B8CSY7	MDH_SHEPW	1, ., 1, ., 1, ., 3, 7	0.5767	0.8766	0.8456	yes	no
Q4R568	MDHM_MACFA	1, ., 1, ., 1, ., 3, 7	0.6083	0.9433	0.8372	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.983
3rd Layer	1.1.1.37	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	300
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	0.0
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	1e-180
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	1e-132
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	1e-127
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	1e-119
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	2e-74
pfam00056	142	pfam00056, Ldh_1_N, lactate/malate dehydrogenase,	1e-57
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	1e-47
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	4e-45
pfam02866	173	pfam02866, Ldh_1_C, lactate/malate dehydrogenase,	4e-37
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	2e-36
PTZ00117	319	PTZ00117, PTZ00117, malate dehydrogenase; Provisio	1e-33
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	4e-30
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	8e-29
cd05294	309	cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas	3e-28
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	7e-28
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	1e-21
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	3e-21
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	1e-20
TIGR01759	323	TIGR01759, MalateDH-SF1, malate dehydrogenase	9e-18
cd00704	323	cd00704, MDH, Malate dehydrogenase	1e-17
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	2e-16
cd05290	307	cd05290, LDH_3, A subgroup of L-lactate dehydrogen	2e-16
cd01336	325	cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an	2e-15
cd01338	322	cd01338, MDH_choloroplast_like, Chloroplast-like m	2e-14
TIGR01758	324	TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-	2e-13
TIGR01756	313	TIGR01756, LDH_protist, lactate dehydrogenase	6e-13
PRK05442	326	PRK05442, PRK05442, malate dehydrogenase; Provisio	2e-12
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	3e-12
PLN00135	309	PLN00135, PLN00135, malate dehydrogenase	2e-10
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	9e-10
PLN00112	444	PLN00112, PLN00112, malate dehydrogenase (NADP); P	1e-06
TIGR01757	387	TIGR01757, Malate-DH_plant, malate dehydrogenase,	3e-06

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score =  565 bits (1458), Expect = 0.0
 Identities = 213/278 (76%), Positives = 239/278 (85%)

Query: 18  ARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT 77
               +    P  KVAVLGAAGGIGQPL+LLMK+NPLVS L LYDIANTPGVAADV HINT
Sbjct: 8   RACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINT 67

Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
            ++V G++G+DQLG AL+ +D+VIIPAGVPRKPGMTRDDLFNINAGIVK LC A+AK+CP
Sbjct: 68  PAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCP 127

Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN 197
           NA+VN+ISNPVNSTVPIAAEV KKAG Y+ KKLFGVTTLDVVRA TF A K  ++ A+V+
Sbjct: 128 NALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKGLDPADVD 187

Query: 198 VPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257
           VPVVGGHAGITILPL SQATPK +  DE+I+ALTKR Q+GGTEVVEAKAG GSATLSMAY
Sbjct: 188 VPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAY 247

Query: 258 AGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 295
           A A FADACL+GLNG  DVVECS+VQS VTELPFFASK
Sbjct: 248 AAARFADACLRGLNGEADVVECSYVQSEVTELPFFASK 285

Length = 323

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score =  497 bits (1283), Expect = e-180
 Identities = 184/266 (69%), Positives = 221/266 (83%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGAAGGIGQPL+LL+KLNPLVS LALYDI NTPGVAAD+ HINT ++V GY+G ++
Sbjct: 2   KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEE 61

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L +AL+ +DVV+IPAGVPRKPGMTRDDLFNINAGIV+DL +A+AK CP A++ +ISNPVN
Sbjct: 62  LKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVN 121

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITI 209
           STVPIAAEV KKAG Y+ K+LFGVTTLDVVRA TF A    ++ A+VNVPV+GGH+G+TI
Sbjct: 122 STVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELLGLDPAKVNVPVIGGHSGVTI 181

Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKG 269
           LPL SQ  P      E+I+ALT R Q GG EVV+AKAG GSATLSMAYAGA FA++ L+G
Sbjct: 182 LPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLRG 241

Query: 270 LNGVPDVVECSFVQSTVTELPFFASK 295
           L G   V+EC++V+S VTE PFFA+ 
Sbjct: 242 LKGEKGVIECAYVESDVTEAPFFATP 267

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score =  377 bits (969), Expect = e-132
 Identities = 166/266 (62%), Positives = 204/266 (76%), Gaps = 1/266 (0%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGAAGGIGQPL+LL+KL P VS L+LYDIA   GVAAD+ HI T + V G+ G + 
Sbjct: 1   KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEG 60

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L  AL+ +DVV+IPAGVPRKPGMTRDDLFN+NAGIVKDL +A+A+ CP A++ +I+NPVN
Sbjct: 61  LENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVN 120

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITI 209
           STVPIAAEV KK G Y+  KLFGVTTLD+VRA TF A     +  EVNVPV+GGH+G TI
Sbjct: 121 STVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELKGKDPMEVNVPVIGGHSGETI 180

Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKG 269
           +PL SQ   K    ++ ++AL  R Q+ GTEVV+AKAG GSATLSMA+AGA F  + ++G
Sbjct: 181 IPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG 240

Query: 270 LNGVPDVVECSFVQS-TVTELPFFAS 294
           L G   VVEC++V+S  VTE  FFA+
Sbjct: 241 LKGEEGVVECAYVESDGVTEATFFAT 266

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score =  365 bits (938), Expect = e-127
 Identities = 153/266 (57%), Positives = 188/266 (70%), Gaps = 4/266 (1%)

Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  D-PTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGI 207
           VN+TV IAAEV KKAG Y++ KLFGVTTLDV+R++TF A        EV VPV+GGH+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + +
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239

Query: 268 KGLNGVPDVVECSFVQSTVTELPFFA 293
           + L G   VVEC++V+       FFA
Sbjct: 240 RALQGEQGVVECAYVEGDGKYARFFA 265

Length = 312

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score =  344 bits (885), Expect = e-119
 Identities = 162/266 (60%), Positives = 201/266 (75%), Gaps = 3/266 (1%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGAAGGIGQPL+LL+K NP VS L+LYDI   PGVAAD+ HI+T ++V GY   + 
Sbjct: 10  KVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGEL 69

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
             +AL  +D+V+I AGVPRKPGMTRDDLFN NA IV+DL +A+A   P AIV ++SNPVN
Sbjct: 70  WEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVN 129

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITI 209
           STVPIAAE  KKAG Y+ +KLFGVTTLDVVRA+ F A    +N  +VNVPVVGGH+G+TI
Sbjct: 130 STVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEALGMNPYDVNVPVVGGHSGVTI 189

Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKG 269
           +PL SQ T  + L +E ++ +T R Q GG EVV+AK G GSATLSMAYA A ++ + LK 
Sbjct: 190 VPLLSQ-TGLS-LPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTSVLKA 247

Query: 270 LNGVPDVVECSFVQSTVT-ELPFFAS 294
           L G   +VEC+FV+S +  E PFF+S
Sbjct: 248 LRGDKGIVECAFVESDMRPECPFFSS 273

Length = 321

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score =  230 bits (589), Expect = 2e-74
 Identities = 100/265 (37%), Positives = 141/265 (53%), Gaps = 19/265 (7%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
            KVAV+GA G +G  LA L+ L  L S L L DI      GVA D+ H          + 
Sbjct: 1   MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKIT 59

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
            D   + L+ +D+V+I AGVPRKPGMTR DL   NA IVKD+  AIAKY P+AIV +++N
Sbjct: 60  GDGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTN 119

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG 206
           PV+    IA +    +G    + +   T LD  R +TF A K  V+  +V+  V+G H G
Sbjct: 120 PVDILTYIAMKF---SGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEH-G 175

Query: 207 ITILPLFSQAT----PKANLA----DEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYA 258
            T++PL+SQAT    P   L     +ED++ L +R ++ G E++EAK          A A
Sbjct: 176 DTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK--GAGTYYGPAAA 233

Query: 259 GAIFADACLKGLNGVPDVVECSFVQ 283
            A   +A L+    V  +    ++ 
Sbjct: 234 LARMVEAILRDEKRV--LPVSVYLD 256

Length = 313

>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain

 Score =  181 bits (462), Expect = 1e-57
 Identities = 71/146 (48%), Positives = 90/146 (61%), Gaps = 6/146 (4%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTRSEVAGYMG 86
            KVAV+GA GG+G  LA  + L  L   L L DI      GVA D+ H +T   V G +G
Sbjct: 1   VKVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVG 60

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
            D   +AL+D+DVV+I AGVPRKPGMTR DL N NAGI KD+  AIAK  P+AIV ++SN
Sbjct: 61  GDD-YEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSN 119

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFG 172
           PV+    IA +V   +G   E+ +  
Sbjct: 120 PVDILTYIAWKV---SGLPPERVIGS 142

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score =  161 bits (410), Expect = 1e-47
 Identities = 92/251 (36%), Positives = 141/251 (56%), Gaps = 24/251 (9%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGH----INTRSEVAG 83
           K++++GA G +G  LA L+ L  L   + L+DI    P G A D+          +++ G
Sbjct: 4   KISIIGA-GNVGATLAHLLALKELGD-VVLFDIVEGVPQGKALDIAEAAPVEGFDTKITG 61

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
              ND   + +  SDVV+I AGVPRKPGM+RDDL  INA I+KD+   I KY P+AIV +
Sbjct: 62  --TNDY--EDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIV 117

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT-LDVVRAKTFYAGKANVNVAEVNVPVVG 202
           ++NPV++   +A     K   + + ++ G+   LD  R +TF A + NV+V +V   V+G
Sbjct: 118 VTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLG 173

Query: 203 GHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257
           GH G +++PL   +T    P  +L + E +  + +RT+ GG E+V      GSA  + A 
Sbjct: 174 GH-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA 231

Query: 258 AGAIFADACLK 268
           + A   +A LK
Sbjct: 232 SIAEMVEAILK 242

Length = 307

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score =  154 bits (392), Expect = 4e-45
 Identities = 90/250 (36%), Positives = 135/250 (54%), Gaps = 24/250 (9%)

Query: 31  VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGH----INTRSEVAGY 84
           ++++GA G +G  LA L+ L  L   + L DI    P G A D+      + + ++V G 
Sbjct: 1   ISIIGA-GNVGATLAQLLALKELGD-VVLLDIVEGLPQGKALDISQAAPILGSDTKVTG- 57

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144
             ND   + +  SDVV+I AG+PRKPGM+RDDL   NA IVK++   I KY PNAIV ++
Sbjct: 58  -TNDY--EDIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV 114

Query: 145 SNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGG 203
           +NP++        V  KA  +   ++ G+   LD  R + F A +  V+V +V   V+GG
Sbjct: 115 TNPLDVMT----YVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGG 170

Query: 204 HAGITILPLFSQAT-----PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYA 258
           H G T++PL   +T         +  E+I  + +RT++GG E+V      GSA  + A A
Sbjct: 171 H-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAA 228

Query: 259 GAIFADACLK 268
            A   +A LK
Sbjct: 229 IAEMVEAILK 238

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain

 Score =  130 bits (328), Expect = 4e-37
 Identities = 52/134 (38%), Positives = 69/134 (51%), Gaps = 16/134 (11%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG----------ITILPLFSQATPKANLA 223
           TTLD  RA+TF A K  V+   VNV V+G H+G          +TI+PL SQ        
Sbjct: 1   TTLDTARARTFLAEKFGVDPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKDT 60

Query: 224 DEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGV--PDVVECSF 281
           D +++ L +R Q+ G EV+EAKA  GS T SMAYA A  A A L+G  GV    V    +
Sbjct: 61  DWELEELIERVQNAGYEVIEAKA--GSTTYSMAYAAARIAKAILRGTGGVLSVGVYLDGY 118

Query: 282 VQSTVTELPFFASK 295
                 +  +F+  
Sbjct: 119 YG--SPDDIYFSVP 130

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score =  130 bits (329), Expect = 2e-36
 Identities = 67/192 (34%), Positives = 97/192 (50%), Gaps = 9/192 (4%)

Query: 31  VAVLGAAGGIGQPLALLM--KLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYMG 86
           +AV+GA G +G  LA  +      L   L LYDI      GVA D+              
Sbjct: 1   IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI 60

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
            D   +A +D+DVVII AGV RKPGM R DL   N  IVK++   I KY P+A + ++SN
Sbjct: 61  TDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG 206
           PV+    I   +  +     ++K+ G+ TLD +R +   A K  V+  +V V ++G H G
Sbjct: 121 PVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRILAEKLGVDPDDVKVYILGEHGG 176

Query: 207 ITILPLFSQATP 218
            + +P +S    
Sbjct: 177 -SQVPDWSTVRI 187

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional

 Score =  125 bits (315), Expect = 1e-33
 Identities = 84/257 (32%), Positives = 132/257 (51%), Gaps = 21/257 (8%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTP-GVAADVGHINTRSEVAGYMGN 87
           K++++GA G IG  +ALL+    L   + LYD+    P G A D+ H +T       +  
Sbjct: 7   KISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILG 64

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
               + ++DSDVV+I AGV RK  MTR+DL  IN  I+K +  ++ KYCPNA V  ++NP
Sbjct: 65  TNNYEDIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNP 124

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG 206
           ++       +VF++       K+ G+   LD  R +   A K  V+  +V+  V+GGH G
Sbjct: 125 LD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGH-G 179

Query: 207 ITILPL----------FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
             ++PL           S    K  + +++I  + K+T++ G E+V+    KGSA  + A
Sbjct: 180 DLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKL-LKKGSAFFAPA 238

Query: 257 YAGAIFADACLKGLNGV 273
            A     +A LK    V
Sbjct: 239 AAIVAMIEAYLKDEKRV 255

Length = 319

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score =  115 bits (290), Expect = 4e-30
 Identities = 91/278 (32%), Positives = 145/278 (52%), Gaps = 37/278 (13%)

Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TR 78
            +  RK++++G+ G IG  +A L+ L  L   + L+DI  N P G A D+ H N    + 
Sbjct: 3   MIKRRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSN 60

Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIA 133
           S+V G   N+   + +  SDVVI+ AG+ ++PG +     RDDL  +NA I+ ++   I 
Sbjct: 61  SKVIG--TNNY--EDIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIK 116

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYAGKANVN 192
           KYCPNA V +I+NP++  V    ++ ++     + K+ G+   LD  R +T+ A K  VN
Sbjct: 117 KYCPNAFVIVITNPLDVMV----KLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVN 172

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVV 242
             +V+  V+G H G  ++PL    T           K  +  E+I  + +RT++ G E+V
Sbjct: 173 PRDVHASVIGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIV 231

Query: 243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS 280
           +   G GSA  + A A    A+A LK       V+ CS
Sbjct: 232 DL-LGTGSAYFAPAAAAIEMAEAYLKDKK---RVLPCS 265

Length = 321

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score =  111 bits (280), Expect = 8e-29
 Identities = 75/259 (28%), Positives = 119/259 (45%), Gaps = 32/259 (12%)

Query: 31  VAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYMGND 88
           + ++GA G +G  +A  +    L S L L D+      G A D+ H       A      
Sbjct: 1   ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSH-------ASAFLAT 52

Query: 89  Q---LGQALED---SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
                G    D   +D+V+I AG PRKPG TR DL N NA I++ + + + KY P+AI+ 
Sbjct: 53  GTIVRGGDYADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIIL 112

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           ++SNPV+    I   V +K     + ++ G  T LD  R ++  A K +V+   V+  V+
Sbjct: 113 VVSNPVD----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVL 168

Query: 202 GGHAGITILPLFSQAT-------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLS 254
           G H G + +  +S AT         A     D++A+ +  +  G E++     KG+    
Sbjct: 169 GEH-GDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIR---LKGATNYG 224

Query: 255 MAYAGAIFADACLKGLNGV 273
           +A A A    + L     V
Sbjct: 225 IATAIADIVKSILLDERRV 243

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

 Score =  110 bits (276), Expect = 3e-28
 Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 43/243 (17%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNP------LVSR-----------LALYDIANTPGVAADV 72
           KV+++GA+G +G   ALL+          L+SR           L +YD     G+ A++
Sbjct: 2   KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI 61

Query: 73  GHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI 132
              +  S+VAG             SD+VII AGVPRK GM+R DL   NA IVK     I
Sbjct: 62  KISSDLSDVAG-------------SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQI 108

Query: 133 AKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT-LDVVRAKTFYAGKANV 191
           A++ P+  + +++NPV+     A    K++G +++ ++FG+ T LD +R K   A   NV
Sbjct: 109 AEFAPDTKILVVTNPVDVMTYKA---LKESG-FDKNRVFGLGTHLDSLRFKVAIAKHFNV 164

Query: 192 NVAEVNVPVVGGHAGITILPLFSQAT----PKANLA---DEDIKALTKRTQDGGTEVVEA 244
           +++EV+  ++G H G +++PL S  +    P        D D++ + +  ++ G  ++  
Sbjct: 165 HISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL 223

Query: 245 KAG 247
           K G
Sbjct: 224 KGG 226

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score =  109 bits (273), Expect = 7e-28
 Identities = 87/253 (34%), Positives = 140/253 (55%), Gaps = 26/253 (10%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAAD------VGHINTRSE 80
           +K++V+GA G +G   A  +    L + L L D+      G A D      VG  +T+  
Sbjct: 2   KKISVIGA-GFVGATTAFRLAEKEL-ADLVLLDVVEGIPQGKALDMYEASPVGGFDTK-- 57

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
           V G   N+    A  +SD+V+I AG+PRKPGM+R+DL ++NAGIV+++   I ++ PN I
Sbjct: 58  VTG--TNNYADTA--NSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPI 113

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPV 200
           + ++SNP+++   +A +   K+G   E+ +     LD  R +TF A +  V+V +V   V
Sbjct: 114 IVVVSNPLDAMTYVAWQ---KSGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACV 170

Query: 201 VGGHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
           +GGH G  ++PL   +T    P A+L + E I  + +RT+ GG E+V     +GSA  + 
Sbjct: 171 LGGH-GDAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNL-LKQGSAYYAP 228

Query: 256 AYAGAIFADACLK 268
           A +     +A LK
Sbjct: 229 AASVVEMVEAILK 241

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score = 92.2 bits (230), Expect = 1e-21
 Identities = 68/244 (27%), Positives = 107/244 (43%), Gaps = 37/244 (15%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGH----INTRSEVA 82
            KVA++GA G +G   A  + L  L S + L DI  A   G A D+ H    +      A
Sbjct: 1   MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA 59

Query: 83  G-YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           G Y          + +DVV+I AG  +KPG TR DL   N  I K++   I KY P+AI+
Sbjct: 60  GDY-------ADCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAIL 112

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPV 200
            +++NPV+    +   V  K       ++ G  T LD  R +        V+   V+  +
Sbjct: 113 LVVTNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYI 168

Query: 201 VGGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
           +G H G + + ++S A                   +E  + + +  ++   E++E    K
Sbjct: 169 IGEH-GDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIE---RK 224

Query: 249 GSAT 252
           G AT
Sbjct: 225 G-AT 227

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score = 90.7 bits (226), Expect = 3e-21
 Identities = 67/257 (26%), Positives = 110/257 (42%), Gaps = 35/257 (13%)

Query: 37  AGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEV--AGYMGND 88
           AG +G   A  +    +   + L DI      G A D+ H    + T  ++    Y    
Sbjct: 4   AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDY---- 59

Query: 89  QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV 148
                 +D+D+V+I AG P+KPG TR +L   N  I+K +   + K   + I  + +NPV
Sbjct: 60  ---SDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPV 116

Query: 149 NSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGI 207
           +    I   V  K   + + ++ G  T LD  R +   A K  V+   V+  ++G H G 
Sbjct: 117 D----ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEH-GD 171

Query: 208 TILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           + +P++S AT            K    D D++ + K  +D   E++     KG+    + 
Sbjct: 172 SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIIN---RKGATYYGIG 228

Query: 257 YAGAIFADACLKGLNGV 273
            A A   +A L   N V
Sbjct: 229 MAVARIVEAILHDENRV 245

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score = 89.4 bits (223), Expect = 1e-20
 Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 20/230 (8%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
           RKV ++GA G +G   A  +    +   L L DI N      +   +             
Sbjct: 1   RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDI-NEEKAEGEALDLEDALAFLPSPVKI 58

Query: 89  QLG--QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
           + G     +D+D+V+I AG P+KPG TR DL   NA I+K +   I     + I  + SN
Sbjct: 59  KAGDYSDCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHA 205
           PV+    +   V +K     + ++ G  T+LD  R +   A K NV+   V+  V+G H 
Sbjct: 119 PVD----VITYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGEH- 173

Query: 206 GITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAK 245
           G +    +S  T           +  L++ D+  + +  +  G E++  K
Sbjct: 174 GDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGK 223

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase

 Score = 81.6 bits (202), Expect = 9e-18
 Identities = 83/253 (32%), Positives = 108/253 (42%), Gaps = 37/253 (14%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG IG  L        L  K  P+V  L L DI         V       E  
Sbjct: 5   RVAVTGAAGQIGYSLLFRIASGELFGKDQPVV--LHLLDIPPAMKALEGV-----AMELE 57

Query: 81  ------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                 +AG +      +A +D D  ++    PRKPGM R DL + N  I K+   A+ K
Sbjct: 58  DCAFPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNK 117

Query: 135 YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
               +  V ++ NP N+   IA+   K A     K    +T LD  RAK   A KA V V
Sbjct: 118 VAKKDVKVLVVGNPANTNALIAS---KNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPV 174

Query: 194 AEV-NVPVVGGHAGITILPLFSQATPKANLADEDIK-------ALTKRTQDGGTEVVEAK 245
           ++V NV + G H+  T +P F+ AT       E IK             Q  G  V+EA+
Sbjct: 175 SDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEAR 233

Query: 246 AGKGSATLSMAYA 258
            G  SA  S A A
Sbjct: 234 -GASSA-ASAANA 244

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323

>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase

 Score = 81.6 bits (202), Expect = 1e-17
 Identities = 68/205 (33%), Positives = 88/205 (42%), Gaps = 28/205 (13%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
            V + GAAG IG  L        L     P++  L L DI   P + A  G      E  
Sbjct: 2   HVLITGAAGQIGYNLLFLIASGELFGDDQPVI--LHLLDI--PPAMKALEG---VVMELQ 54

Query: 81  ------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                 + G +      +A +D DV I+    PRKPGM R DL   NA I K+   A+ K
Sbjct: 55  DCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNK 114

Query: 135 YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
              P   V ++ NP N+   IA    K A     K    +T LD  RAK   A K  V V
Sbjct: 115 VAKPTVKVLVVGNPANTNALIAL---KNAPNLPPKNFTALTRLDHNRAKAQVARKLGVRV 171

Query: 194 AEV-NVPVVGGHAGITILPLFSQAT 217
           ++V NV + G H+  T +P  S A 
Sbjct: 172 SDVKNVIIWGNHSN-TQVPDLSNAV 195

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score = 77.6 bits (192), Expect = 2e-16
 Identities = 62/244 (25%), Positives = 97/244 (39%), Gaps = 48/244 (19%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHI-----NTRSEV 81
            KV ++G  G +G   A  +    +   L + DI      G A D+ H       T+   
Sbjct: 7   NKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA 65

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
             Y          +D+D+V+I AG P+KPG TR DL   N  I K +   +     + I 
Sbjct: 66  GDY-------SDCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIF 118

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV---------TTLDVVRAKTFYAGKANVN 192
            + SNPV+              TY   KL G          T+LD  R +   + K +V+
Sbjct: 119 LVASNPVDIL------------TYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVD 166

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEV 241
              V+  ++G H G T  P++S A                  +ED+  + +  +D   E+
Sbjct: 167 PRSVHAYIIGEH-GDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEI 225

Query: 242 VEAK 245
           +E K
Sbjct: 226 IEKK 229

Length = 315

>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 71/258 (27%), Positives = 102/258 (39%), Gaps = 45/258 (17%)

Query: 30  KVAVLGAAGGIG-QPLALLMKLNPLVSRLALYDIANTPGVAA----DVGH-------INT 77
           K+ V+GA G +G   L   + L  L S + L D+    GVA     D  H        NT
Sbjct: 1   KLVVIGA-GHVGSAVLNYALALG-LFSEIVLIDV--NEGVAEGEALDFHHATALTYSTNT 56

Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT--RDDLFNINAGIVKDLCSAIAKY 135
           +     Y           D+D+++I AG    PG T  R DL   NA I++++   I K 
Sbjct: 57  KIRAGDY-------DDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV 109

Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVA 194
              A++ +I+NP++  V IAA  F     Y   K+ G  T LD  R +   A K  V+  
Sbjct: 110 TKEAVIILITNPLDIAVYIAATEFD----YPANKVIGTGTMLDTARLRRIVADKYGVDPK 165

Query: 195 EVNVPVVGGHAGITILPLFSQATPKANLADE----------DIKALTKRTQDGGTEVVEA 244
            V   V+G H G    P++S         DE          D   L +       +V   
Sbjct: 166 NVTGYVLGEH-GSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNR 224

Query: 245 K----AGKGSATLSMAYA 258
           K    AG   +   +  A
Sbjct: 225 KGWTNAGIAKSASRLIKA 242

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307

>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 72/261 (27%), Positives = 106/261 (40%), Gaps = 49/261 (18%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSR-----------LALYDIANTPGVAADVGHINTR 78
           +V V GAAG I   L       P++++           L L DI         V      
Sbjct: 4   RVLVTGAAGQIAYSLL------PMIAKGDVFGPDQPVILHLLDIPPALKALEGV-----V 52

Query: 79  SE--------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCS 130
            E        +   +      +A +D DV I+   +PRK GM R DL   N  I K+   
Sbjct: 53  MELQDCAFPLLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGE 112

Query: 131 AIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKA 189
           A+ KY   N  V ++ NP N+   I     K A +  ++    +T LD  RAK+  A K 
Sbjct: 113 ALDKYAKKNVKVLVVGNPANTNALILL---KYAPSIPKENFTALTRLDHNRAKSQIALKL 169

Query: 190 NVNVAEV-NVPVVGGHAGITILPLFSQATPKANLADEDIKALTK-----------RTQDG 237
            V V++V NV + G H+  T  P  + AT + N   +  +   K             Q  
Sbjct: 170 GVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKR 228

Query: 238 GTEVVEAKAGKGSATLSMAYA 258
           G  V++A+  K S+ +S A A
Sbjct: 229 GAAVIKAR--KLSSAMSAAKA 247

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325

>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases

 Score = 71.8 bits (177), Expect = 2e-14
 Identities = 71/247 (28%), Positives = 99/247 (40%), Gaps = 38/247 (15%)

Query: 30  KVAVLGAAGGIGQPLALLMKL---------NPLVSRLALYDIANT----PGVA---ADVG 73
           +VAV GAAG IG   +LL ++          P++  L L ++        GVA    D  
Sbjct: 4   RVAVTGAAGQIGY--SLLFRIASGEMFGPDQPVI--LQLLELPQALKALEGVAMELEDCA 59

Query: 74  HINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
                  V      D    A +D+D  ++    PR PGM R DL   N  I      A+ 
Sbjct: 60  FPLLAEIVIT----DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALN 115

Query: 134 KYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
                +  V ++ NP N+   IA    K A          +T LD  RAK+  A KA V 
Sbjct: 116 DVASRDVKVLVVGNPCNTNALIAM---KNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVP 172

Query: 193 VAEV-NVPVVGGHAGITILPLFSQATPKANLADEDI-------KALTKRTQDGGTEVVEA 244
           V +V N+ + G H+  T  P F+ AT     A E I              Q  G  +++A
Sbjct: 173 VTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKA 231

Query: 245 KAGKGSA 251
           + G  SA
Sbjct: 232 R-GASSA 237

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322

>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent

 Score = 69.5 bits (170), Expect = 2e-13
 Identities = 72/257 (28%), Positives = 103/257 (40%), Gaps = 41/257 (15%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV- 81
           +V V GAAG IG  L        +L K  P++  L L DI     V   V       E+ 
Sbjct: 1   RVVVTGAAGQIGYALLPMIARGRMLGKDQPII--LHLLDIPPAMKVLEGV-----VMELM 53

Query: 82  -------AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                   G +       A  D DV I+    PRK GM R DL + N  I K+   A+ K
Sbjct: 54  DCAFPLLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDK 113

Query: 135 YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
               +  V ++ NP N+   + +     A +   K    +T LD  RA    A +A V V
Sbjct: 114 LAKKDCKVLVVGNPANTNALVLSNY---APSIPPKNFSALTRLDHNRALAQVAERAGVPV 170

Query: 194 AEV-NVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR-----------TQDGGTEV 241
           ++V NV + G H+  T  P  + AT       + ++   K             Q  G  +
Sbjct: 171 SDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAI 229

Query: 242 VEAKAGKGSATLSMAYA 258
           + A+  K S+ LS A A
Sbjct: 230 IRAR--KLSSALSAAKA 244

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324

>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase

 Score = 67.6 bits (165), Expect = 6e-13
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNA 139
           +AG +   +L +A +D D   + A VP KPG  R DL   N  I K    A+++Y  P  
Sbjct: 45  LAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTV 104

Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVP 199
            V +I NPVN+   +A      A   + +    +  LD  RA +  A K  V V  +   
Sbjct: 105 KVLVIGNPVNTNCLVA---MLHAPKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHV 161

Query: 200 VVGGHAGITILPLFSQAT 217
           VV G+   +++   + A 
Sbjct: 162 VVWGNHAESMVADLTHAE 179

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313

>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional

 Score = 66.4 bits (163), Expect = 2e-12
 Identities = 78/250 (31%), Positives = 106/250 (42%), Gaps = 44/250 (17%)

Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG IG  L        +L K  P+   L L +I   P + A  G      E  
Sbjct: 6   RVAVTGAAGQIGYSLLFRIASGDMLGKDQPV--ILQLLEI--PPALKALEG---VVMELD 58

Query: 81  ------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                 +AG +  D    A +D+DV ++    PR PGM R DL   N  I      A+ +
Sbjct: 59  DCAFPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNE 118

Query: 135 YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
               +  V ++ NP N+   IA    K A     +    +T LD  RA +  A KA V V
Sbjct: 119 VAARDVKVLVVGNPANTNALIAM---KNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPV 175

Query: 194 AEV-NVPVVGGHAGITILPLFSQAT----PKAN-------LADEDIKALTKRTQDGGTEV 241
           A++  + V G H+  T  P F  AT    P A        L D  I  + KR    G  +
Sbjct: 176 ADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKR----GAAI 230

Query: 242 VEAKAGKGSA 251
           +EA+ G  SA
Sbjct: 231 IEAR-GASSA 239

Length = 326

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score = 65.7 bits (161), Expect = 3e-12
 Identities = 68/266 (25%), Positives = 109/266 (40%), Gaps = 39/266 (14%)

Query: 30  KVAVLGA-AGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           KV V+G    G+   +++L K   L   L L D+      G A D+ H       + ++ 
Sbjct: 5   KVTVVGVGQVGMACAISILAK--GLADELVLVDVVEDKLKGEAMDLQH------GSAFLK 56

Query: 87  N-----DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           N     D+      +S VVI+ AG  +  G +R DL   N  I K +   + KY PNAI+
Sbjct: 57  NPKIEADKDYSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAIL 116

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPV 200
            ++SNPV+    I   V  K     + ++ G    LD  R +   A +  V  + V+  +
Sbjct: 117 LVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHGWI 172

Query: 201 VGGH-------------AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAG 247
           +G H             AG+ +  L        +   E  K + K+  D   EV+     
Sbjct: 173 IGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKD--PEKWKEVHKQVVDSAYEVI---KL 227

Query: 248 KGSATLSMAYAGAIFADACLKGLNGV 273
           KG  + ++  + A   DA L+    V
Sbjct: 228 KGYTSWAIGLSVADLVDAILRNTGRV 253

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 19/180 (10%)

Query: 92  QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS 150
           +A +  ++ ++  G PRK GM R D+ + N  I K   SA+ K+  P+  V +++NP N+
Sbjct: 54  EACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANT 113

Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITI 209
              I  E    A +  EK +  +T LD  RA    + +  V V++V NV + G H+  T 
Sbjct: 114 NALILKEF---APSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS-TQ 169

Query: 210 LPLFSQATPKANLADEDIKALT-----------KRTQDGGTEVVEAKAGKGSATLSMAYA 258
            P  + AT K    ++ ++ L               Q  G  +++A+  K S+ LS A +
Sbjct: 170 YPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASS 227

Length = 309

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score = 58.2 bits (141), Expect = 9e-10
 Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 17/201 (8%)

Query: 22  SSESVPDR---KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGH-- 74
           SS   P R   KV+V+G  G +G  +A  +    L   LAL D+      G   D+ H  
Sbjct: 28  SSPPSPTRRHTKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA 86

Query: 75  -INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
               R+++               SD+ I+ AG  + PG +R +L   N  + + +   +A
Sbjct: 87  AFLPRTKILA----STDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELA 142

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
           KY P+ I+ ++SNPV+    +A   +K +G    + +   T LD  R +   A   +VN 
Sbjct: 143 KYSPDTILLIVSNPVDVLTYVA---WKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVNA 199

Query: 194 AEVNVPVVGGHAGITILPLFS 214
            +V   +VG H G + + L+S
Sbjct: 200 QDVQAYIVGEH-GDSSVALWS 219

Length = 350

>gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 47/155 (30%), Positives = 67/155 (43%), Gaps = 7/155 (4%)

Query: 95  EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYCPNAIVNMISNPVNSTVP 153
           +D++  ++    PR PGM R DL +IN  I  +   A+      N  V ++ NP N+   
Sbjct: 175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNAL 234

Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPL 212
           I     K A     K    +T LD  RAK   A KA V   +V NV + G H+  T +P 
Sbjct: 235 IC---LKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHS-TTQVPD 290

Query: 213 FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAG 247
           F  A        E I    K  ++  T  V+ + G
Sbjct: 291 FLNAKINGLPVKEVITD-HKWLEEEFTPKVQKRGG 324

Length = 444

>gnl|CDD|130818 TIGR01757, Malate-DH_plant, malate dehydrogenase, NADP-dependent

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 52/158 (32%), Positives = 70/158 (44%), Gaps = 7/158 (4%)

Query: 92  QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS 150
           +  ED+D  ++    PR PGM R DL +IN  I  D   A+      N  V ++ NP N+
Sbjct: 116 EVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNT 175

Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITI 209
              IA    K A     K    +T LD  RAK   A K+      V NV + G H+  T 
Sbjct: 176 NALIA---MKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHS-TTQ 231

Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAG 247
           +P F  A      A E IK  TK  ++  T  V+ + G
Sbjct: 232 VPDFVNAKIGGRPAKEVIKD-TKWLEEEFTPTVQKRGG 268

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. Length = 387

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	100.0
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	100.0
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
PLN00106	323	malate dehydrogenase	100.0
PTZ00325	321	malate dehydrogenase; Provisional	100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	100.0
KOG1495	332	consensus Lactate dehydrogenase [Energy production	100.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	100.0
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	100.0
PRK05086	312	malate dehydrogenase; Provisional	100.0
PRK05442	326	malate dehydrogenase; Provisional	100.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	100.0
PLN02602	350	lactate dehydrogenase	100.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	100.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	100.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	100.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	100.0
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	100.0
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	100.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	100.0
PTZ00117	319	malate dehydrogenase; Provisional	100.0
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	100.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	100.0
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	100.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	100.0
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	100.0
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	100.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	100.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	100.0
PLN00135	309	malate dehydrogenase	100.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	100.0
PRK06223	307	malate dehydrogenase; Reviewed	100.0
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	100.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	100.0
KOG1496	332	consensus Malate dehydrogenase [Energy production	100.0
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	100.0
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	99.95
PRK15076	431	alpha-galactosidase; Provisional	99.92
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	99.91
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	99.9
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	99.9
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.86
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	99.78
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	99.76
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.88
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	98.87
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	98.82
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.72
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.63
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.63
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.61
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.52
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.52
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.52
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.49
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.47
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.47
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.45
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.44
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.42
PLN02166	436	dTDP-glucose 4,6-dehydratase	98.38
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.36
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.35
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	98.34
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.31
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.29
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.26
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.25
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.24
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.23
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	98.22
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.21
PLN02427	386	UDP-apiose/xylose synthase	98.21
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.2
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.19
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	98.18
PLN02572	442	UDP-sulfoquinovose synthase	98.15
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.13
PLN02206	442	UDP-glucuronate decarboxylase	98.12
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.1
PLN00198	338	anthocyanidin reductase; Provisional	98.09
CHL00194	317	ycf39 Ycf39; Provisional	98.06
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	98.04
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.04
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.03
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	98.03
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.02
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.01
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	97.99
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	97.98
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	97.98
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	97.97
PLN02650	351	dihydroflavonol-4-reductase	97.95
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	97.95
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	97.93
PLN02214	342	cinnamoyl-CoA reductase	97.93
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	97.92
PLN02695	370	GDP-D-mannose-3',5'-epimerase	97.91
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.91
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	97.9
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	97.9
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.9
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.87
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	97.85
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	97.84
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.84
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.84
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.83
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.83
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	97.83
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.82
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.81
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	97.79
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	97.79
PLN02896	353	cinnamyl-alcohol dehydrogenase	97.76
PLN02778	298	3,5-epimerase/4-reductase	97.75
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	97.73
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	97.71
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	97.71
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.68
PLN03209	576	translocon at the inner envelope of chloroplast su	97.68
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.66
PRK10675	338	UDP-galactose-4-epimerase; Provisional	97.66
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	97.66
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	97.63
PLN02583	297	cinnamoyl-CoA reductase	97.63
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	97.6
PLN02260	668	probable rhamnose biosynthetic enzyme	97.59
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.57
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.57
PRK06194	287	hypothetical protein; Provisional	97.54
PRK07201	657	short chain dehydrogenase; Provisional	97.53
PLN02653	340	GDP-mannose 4,6-dehydratase	97.53
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	97.51
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.48
PRK12480	330	D-lactate dehydrogenase; Provisional	97.45
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	97.45
PLN02688	266	pyrroline-5-carboxylate reductase	97.45
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.44
PRK07680	273	late competence protein ComER; Validated	97.4
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.4
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	97.34
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	97.34
PLN02240	352	UDP-glucose 4-epimerase	97.32
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.31
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	97.31
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.3
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	97.3
PRK12320	699	hypothetical protein; Provisional	97.29
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.28
PRK05865	854	hypothetical protein; Provisional	97.27
PRK08655	437	prephenate dehydrogenase; Provisional	97.27
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.27
PRK07417	279	arogenate dehydrogenase; Reviewed	97.26
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.25
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.23
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.22
PRK06545	359	prephenate dehydrogenase; Validated	97.21
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.2
PLN02686	367	cinnamoyl-CoA reductase	97.19
PRK12367	245	short chain dehydrogenase; Provisional	97.17
PLN02253	280	xanthoxin dehydrogenase	97.17
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.16
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.16
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	97.15
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.15
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.15
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.14
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	97.12
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.09
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.07
PRK08605	332	D-lactate dehydrogenase; Validated	97.07
PRK13243	333	glyoxylate reductase; Reviewed	97.07
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.06
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.06
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.04
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.04
PRK08267	260	short chain dehydrogenase; Provisional	97.04
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.04
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	97.03
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	97.03
COG2910	211	Putative NADH-flavin reductase [General function p	97.03
TIGR01746	367	Thioester-redct thioester reductase domain. It has	97.02
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.02
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.0
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	96.98
PRK14982	340	acyl-ACP reductase; Provisional	96.98
PRK08643	256	acetoin reductase; Validated	96.95
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.95
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.94
PRK05717	255	oxidoreductase; Validated	96.94
KOG0409	327	consensus Predicted dehydrogenase [General functio	96.94
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	96.93
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	96.92
PRK06924	251	short chain dehydrogenase; Provisional	96.92
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	96.91
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.91
PRK15059	292	tartronate semialdehyde reductase; Provisional	96.91
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	96.91
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.9
PLN02256	304	arogenate dehydrogenase	96.9
PRK07574	385	formate dehydrogenase; Provisional	96.9
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	96.89
PRK06182	273	short chain dehydrogenase; Validated	96.88
PRK07806	248	short chain dehydrogenase; Provisional	96.88
PRK10538	248	malonic semialdehyde reductase; Provisional	96.87
PRK07069	251	short chain dehydrogenase; Validated	96.87
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	96.87
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	96.86
PRK08213	259	gluconate 5-dehydrogenase; Provisional	96.85
PRK08507	275	prephenate dehydrogenase; Validated	96.85
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.85
PRK07102	243	short chain dehydrogenase; Provisional	96.84
PRK06180	277	short chain dehydrogenase; Provisional	96.82
PRK12829	264	short chain dehydrogenase; Provisional	96.8
PRK13304	265	L-aspartate dehydrogenase; Reviewed	96.8
PLN02996	491	fatty acyl-CoA reductase	96.79
PRK07814	263	short chain dehydrogenase; Provisional	96.76
PRK08278	273	short chain dehydrogenase; Provisional	96.76
PRK12828	239	short chain dehydrogenase; Provisional	96.75
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	96.74
PRK07774	250	short chain dehydrogenase; Provisional	96.74
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.73
PRK07067	257	sorbitol dehydrogenase; Provisional	96.73
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	96.72
PLN02260	668	probable rhamnose biosynthetic enzyme	96.72
PRK06482	276	short chain dehydrogenase; Provisional	96.71
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	96.71
PRK07326	237	short chain dehydrogenase; Provisional	96.7
PLN02712	667	arogenate dehydrogenase	96.7
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	96.7
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	96.7
PRK07856	252	short chain dehydrogenase; Provisional	96.69
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.68
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.68
PLN03139	386	formate dehydrogenase; Provisional	96.67
COG0300	265	DltE Short-chain dehydrogenases of various substra	96.67
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.66
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	96.64
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	96.63
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	96.63
PRK05875	276	short chain dehydrogenase; Provisional	96.62
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	96.62
PRK07831	262	short chain dehydrogenase; Provisional	96.62
PLN00016	378	RNA-binding protein; Provisional	96.61
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.6
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.6
PRK08818	370	prephenate dehydrogenase; Provisional	96.6
PRK12939	250	short chain dehydrogenase; Provisional	96.59
PRK06398	258	aldose dehydrogenase; Validated	96.57
PRK08340	259	glucose-1-dehydrogenase; Provisional	96.57
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.56
PLN02928	347	oxidoreductase family protein	96.56
PRK05993	277	short chain dehydrogenase; Provisional	96.56
PRK06101	240	short chain dehydrogenase; Provisional	96.53
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.52
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.51
PRK08219	227	short chain dehydrogenase; Provisional	96.51
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	96.5
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.5
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.47
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	96.47
PRK12937	245	short chain dehydrogenase; Provisional	96.45
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	96.44
PRK06179	270	short chain dehydrogenase; Provisional	96.44
PRK07832	272	short chain dehydrogenase; Provisional	96.43
PRK07023	243	short chain dehydrogenase; Provisional	96.43
PRK09291	257	short chain dehydrogenase; Provisional	96.42
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.41
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.41
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	96.41
PRK06181	263	short chain dehydrogenase; Provisional	96.4
PRK07890	258	short chain dehydrogenase; Provisional	96.39
PLN02712	667	arogenate dehydrogenase	96.37
PLN02383	344	aspartate semialdehyde dehydrogenase	96.37
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.37
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	96.36
PRK06914	280	short chain dehydrogenase; Provisional	96.35
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.34
PRK06197	306	short chain dehydrogenase; Provisional	96.32
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.31
PRK08251	248	short chain dehydrogenase; Provisional	96.31
PRK08263	275	short chain dehydrogenase; Provisional	96.31
PRK12827	249	short chain dehydrogenase; Provisional	96.3
PRK09135	249	pteridine reductase; Provisional	96.3
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	96.29
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	96.28
PRK05650	270	short chain dehydrogenase; Provisional	96.27
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.26
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.26
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	96.26
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.25
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	96.25
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	96.25
PRK05876	275	short chain dehydrogenase; Provisional	96.25
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.24
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	96.24
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	96.23
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	96.22
PRK06198	260	short chain dehydrogenase; Provisional	96.22
PRK05693	274	short chain dehydrogenase; Provisional	96.22
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.21
PRK06138	252	short chain dehydrogenase; Provisional	96.21
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.21
PRK05866	293	short chain dehydrogenase; Provisional	96.19
PRK12742	237	oxidoreductase; Provisional	96.19
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.19
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	96.18
PRK07060	245	short chain dehydrogenase; Provisional	96.17
TIGR02415	254	23BDH acetoin reductases. One member of this famil	96.16
PRK06128	300	oxidoreductase; Provisional	96.15
PRK06057	255	short chain dehydrogenase; Provisional	96.15
PRK07024	257	short chain dehydrogenase; Provisional	96.14
PRK06841	255	short chain dehydrogenase; Provisional	96.14
PRK08085	254	gluconate 5-dehydrogenase; Provisional	96.14
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	96.12
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	96.12
PRK06953	222	short chain dehydrogenase; Provisional	96.1
PRK06196	315	oxidoreductase; Provisional	96.1
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.09
PRK07454	241	short chain dehydrogenase; Provisional	96.09
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	96.09
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.07
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	96.07
PRK07576	264	short chain dehydrogenase; Provisional	96.07
PLN02503	605	fatty acyl-CoA reductase 2	96.07
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.06
PRK09009	235	C factor cell-cell signaling protein; Provisional	96.06
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.06
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.04
PRK06701	290	short chain dehydrogenase; Provisional	96.03
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.03
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	96.03
PRK05854	313	short chain dehydrogenase; Provisional	96.03
PRK06523	260	short chain dehydrogenase; Provisional	96.03
PRK06172	253	short chain dehydrogenase; Provisional	96.0
PRK07453	322	protochlorophyllide oxidoreductase; Validated	95.99
PRK05855	582	short chain dehydrogenase; Validated	95.98
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	95.98
PLN02780	320	ketoreductase/ oxidoreductase	95.98
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.97
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	95.97
PRK05884	223	short chain dehydrogenase; Provisional	95.96
PRK08265	261	short chain dehydrogenase; Provisional	95.96
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.95
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	95.95
PRK07063	260	short chain dehydrogenase; Provisional	95.95
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.94
PRK07340	304	ornithine cyclodeaminase; Validated	95.94
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.94
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	95.93
PRK12743	256	oxidoreductase; Provisional	95.92
PRK08264	238	short chain dehydrogenase; Validated	95.92
PRK07677	252	short chain dehydrogenase; Provisional	95.92
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	95.91
PRK06436	303	glycerate dehydrogenase; Provisional	95.91
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	95.9
PRK08177	225	short chain dehydrogenase; Provisional	95.9
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	95.9
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.89
PRK08589	272	short chain dehydrogenase; Validated	95.89
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.88
PRK09242	257	tropinone reductase; Provisional	95.87
PRK07074	257	short chain dehydrogenase; Provisional	95.87
PRK07904	253	short chain dehydrogenase; Provisional	95.87
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.86
PRK07577	234	short chain dehydrogenase; Provisional	95.85
PRK06949	258	short chain dehydrogenase; Provisional	95.85
PRK05867	253	short chain dehydrogenase; Provisional	95.85
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	95.85
PRK07097	265	gluconate 5-dehydrogenase; Provisional	95.84
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.84
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.83
PRK12935	247	acetoacetyl-CoA reductase; Provisional	95.81
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	95.81
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.79
PRK06500	249	short chain dehydrogenase; Provisional	95.76
PRK12746	254	short chain dehydrogenase; Provisional	95.75
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	95.74
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	95.73
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.73
PRK09186	256	flagellin modification protein A; Provisional	95.71
PRK08226	263	short chain dehydrogenase; Provisional	95.71
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.71
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	95.7
PRK09072	263	short chain dehydrogenase; Provisional	95.7
PRK09496	453	trkA potassium transporter peripheral membrane com	95.69
PRK08936	261	glucose-1-dehydrogenase; Provisional	95.69
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	95.68
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	95.68
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	95.65
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.64
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.63
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	95.62
PRK07825	273	short chain dehydrogenase; Provisional	95.61
PRK07062	265	short chain dehydrogenase; Provisional	95.6
PRK07985	294	oxidoreductase; Provisional	95.58
PLN02306	386	hydroxypyruvate reductase	95.57
PRK08324	681	short chain dehydrogenase; Validated	95.57
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	95.55
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.54
PRK07478	254	short chain dehydrogenase; Provisional	95.54
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.54
PRK07109	334	short chain dehydrogenase; Provisional	95.53
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.53
PRK06444	197	prephenate dehydrogenase; Provisional	95.53
PRK08703	239	short chain dehydrogenase; Provisional	95.53
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.51
PRK06124	256	gluconate 5-dehydrogenase; Provisional	95.5
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.5
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.5
PRK12824	245	acetoacetyl-CoA reductase; Provisional	95.49
PRK07578	199	short chain dehydrogenase; Provisional	95.49
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.48
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.47
PRK06407	301	ornithine cyclodeaminase; Provisional	95.44
PRK12744	257	short chain dehydrogenase; Provisional	95.44
PRK06141	314	ornithine cyclodeaminase; Validated	95.44
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	95.44
PRK08618	325	ornithine cyclodeaminase; Validated	95.43
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.42
PRK07775	274	short chain dehydrogenase; Provisional	95.42
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	95.39
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	95.39
PRK13303	265	L-aspartate dehydrogenase; Provisional	95.39
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.38
PRK09496	453	trkA potassium transporter peripheral membrane com	95.37
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.36
COG2344	211	AT-rich DNA-binding protein [General function pred	95.36
PRK05599	246	hypothetical protein; Provisional	95.35
PRK07035	252	short chain dehydrogenase; Provisional	95.35
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	95.35
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.34
PRK08339	263	short chain dehydrogenase; Provisional	95.33
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.32
PRK08628	258	short chain dehydrogenase; Provisional	95.31
TIGR00036	266	dapB dihydrodipicolinate reductase.	95.3
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	95.3
PLN02858	1378	fructose-bisphosphate aldolase	95.3
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	95.29
PRK12747	252	short chain dehydrogenase; Provisional	95.29
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	95.25
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.24
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.24
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	95.22
PRK08291	330	ectoine utilization protein EutC; Validated	95.22
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.22
PRK06940	275	short chain dehydrogenase; Provisional	95.22
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	95.2
PRK06823	315	ornithine cyclodeaminase; Validated	95.18
PRK06139	330	short chain dehydrogenase; Provisional	95.17
PRK05872	296	short chain dehydrogenase; Provisional	95.15
PRK06932	314	glycerate dehydrogenase; Provisional	95.12
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	95.11
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.1
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	95.1
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	95.1
PRK08223	287	hypothetical protein; Validated	95.1
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.09
PRK09134	258	short chain dehydrogenase; Provisional	95.06
PRK08017	256	oxidoreductase; Provisional	95.05
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.03
PRK07589	346	ornithine cyclodeaminase; Validated	95.02
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	94.99
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	94.99
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	94.97
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.96
PRK06487	317	glycerate dehydrogenase; Provisional	94.96
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	94.94
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	94.94
PRK06947	248	glucose-1-dehydrogenase; Provisional	94.93
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	94.92
PRK06114	254	short chain dehydrogenase; Provisional	94.91
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	94.87
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	94.86
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	94.86
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.84
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.84
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.84
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.83
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	94.81
PLN00203	519	glutamyl-tRNA reductase	94.8
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.79
PRK06483	236	dihydromonapterin reductase; Provisional	94.78
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	94.78
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.77
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	94.76
PLN02858	1378	fructose-bisphosphate aldolase	94.75
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	94.7
PRK07201	657	short chain dehydrogenase; Provisional	94.7
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	94.66
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.65
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	94.65
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	94.58
PRK06125	259	short chain dehydrogenase; Provisional	94.57
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.53
PRK13403	335	ketol-acid reductoisomerase; Provisional	94.52
PRK07877	722	hypothetical protein; Provisional	94.48
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.43
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.42

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=100.00  E-value=1e-67  Score=488.77  Aligned_cols=272  Identities=68%  Similarity=1.047  Sum_probs=248.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~  108 (300)
                      |||+||||+|+||+++|+.|+.+++++||+|+|++.++|+++||+|+..+..++...+++|++++++|||+||++||.|+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            69999996699999999999999999999999999779999999999754456543234456789999999999999999


Q ss_pred             CCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHHHHHHHH
Q 022263          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGK  188 (300)
Q Consensus       109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~~~la~~  188 (300)
                      +||++|+|++..|.++++++++.|++++|++|+|++|||+|+||++++++.++.+++|++||+|+|.|||+|+++++|++
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~  160 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL  160 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988777777999999999999999999999999


Q ss_pred             cCCCCCceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHHHHHHHHHHc
Q 022263          189 ANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLK  268 (300)
Q Consensus       189 l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i~ai~~  268 (300)
                      +|+++++|+++|||||+|++|||+||++.+..+++++++++|.++++++|++|+++|.|||+|+||+|.|+++++++|++
T Consensus       161 l~v~~~~V~~~v~GeHsGds~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl~  240 (310)
T cd01337         161 LGLDPAKVNVPVIGGHSGVTILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLR  240 (310)
T ss_pred             hCcCHHHEEEEEEecCCCCceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHHH
Confidence            99999999999999996689999999998866666667899999999999999998657899999999999999999999


Q ss_pred             cCCCCCCceeeeeeeCCCCCcCEEEEeEEecC
Q 022263          269 GLNGVPDVVECSFVQSTVTELPFFASKRAWKN  300 (300)
Q Consensus       269 ~~~~~~~v~~~s~v~~~~~~~~~~S~Pv~lg~  300 (300)
                      |+++++.+++|++++++..+++|||+||++|+
T Consensus       241 ~~~~~~~~~~~s~~~~~g~~~v~~s~P~~ig~  272 (310)
T cd01337         241 GLKGEKGVIECAYVESDVTEAPFFATPVELGK  272 (310)
T ss_pred             hcCCCcceEEEEEEeccCCCceEEEEEEEEeC
Confidence            87778889999988877456899999999985

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=1.3e-66  Score=482.11  Aligned_cols=271  Identities=61%  Similarity=0.942  Sum_probs=246.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRK  109 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~~  109 (300)
                      ||+||||+|+||+++|+.|+.+++++||+|+|++++.|+++||+|...+..+..+.+.++++++++|||+||++||.|++
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            79999977999999999999999999999999988899999999987444455432223456899999999999999999


Q ss_pred             CCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHHHHHHHHc
Q 022263          110 PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKA  189 (300)
Q Consensus       110 ~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~~~la~~l  189 (300)
                      ||++|+|++..|.+|+++++++|++++|++++|++|||+|+|++++++++++.+++|++||||+|.|||+||++++|+++
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l  160 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK  160 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999988777779999999998899999999999999


Q ss_pred             CCCCCceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHHHHHHHHHHcc
Q 022263          190 NVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKG  269 (300)
Q Consensus       190 ~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i~ai~~~  269 (300)
                      ++++++|+++||||||++||||+||+++....++++++++|.++++++|++|+++|.|||+|+||+|.|+++++++|+++
T Consensus       161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~  240 (312)
T TIGR01772       161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG  240 (312)
T ss_pred             CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHh
Confidence            99999999999999976699999999985444666668999999999999999975579999999999999999999987


Q ss_pred             CCCCCCceeeeeeeCCC-CCcCEEEEeEEecC
Q 022263          270 LNGVPDVVECSFVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       270 ~~~~~~v~~~s~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                      +.+++.++||++++|+| .+++|||+||++|+
T Consensus       241 ~~d~~~v~~~s~~~g~yg~~~v~~s~P~~ig~  272 (312)
T TIGR01772       241 LKGEEGVVECAYVESDGVTEATFFATPLLLGK  272 (312)
T ss_pred             hCCCccEEEEEEEccCCCcCceEEEEEEEEcC
Confidence            66788999999999998 57999999999985

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=2.4e-64  Score=462.20  Aligned_cols=259  Identities=41%  Similarity=0.598  Sum_probs=230.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCC--cEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~--~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +||+|||| |+||+++++.|+++++.+||+|+|+++  ++|.++||.|+.++.  ..+... +.+ +++++|||+||++|
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~-~~~-y~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG-DGD-YEDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEec-CCC-hhhhcCCCEEEEeC
Confidence            59999997 999999999998888877999999974  689999999997643  334332 234 48899999999999


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHH
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~  183 (300)
                      |.||||||+|+||+..|++|+++++++|+++|||++++++|||+|+|||++   ++.++ +|++|+||+ |.|||+||++
T Consensus        78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~---~k~sg-~p~~rvig~gt~LDsaR~~~  153 (313)
T COG0039          78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIA---MKFSG-FPKNRVIGSGTVLDSARFRT  153 (313)
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHH---HHhcC-CCccceecccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999877663   45555 999999999 7999999999


Q ss_pred             HHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----C----CCHHHHHHHHHHHhchhhhhhhhccCCCCCccch
Q 022263          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM  255 (300)
Q Consensus       184 ~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----~----~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~  255 (300)
                      +||+++++++++|++||+||| |+||||+||++++++    +    .+++++++|.++||++|++|+++| |.| |+||+
T Consensus       154 ~lae~~~v~~~~V~~~ViGeH-Gdt~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~  230 (313)
T COG0039         154 FLAEKLGVSPKDVHAYVIGEH-GDTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP  230 (313)
T ss_pred             HHHHHhCCChhHceeeEeccC-CCceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence            999999999999999999999 689999999999764    1    223567899999999999999976 444 99999


Q ss_pred             HHHHHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263          256 AYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       256 A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                      |.|+++++++|++|   +++|+|+| |++|+| .+++||++||++|+
T Consensus       231 A~a~a~~~~ail~d---~~~vl~~s~~l~G~yg~~dv~~gvP~~lg~  274 (313)
T COG0039         231 AAALARMVEAILRD---EKRVLPVSVYLDGEYGVEDVYFGVPAVLGK  274 (313)
T ss_pred             HHHHHHHHHHHHcC---CCceEEEEEeecCccCcCCeEEEeeEEEcC
Confidence            99999999999998   57899988 799999 78999999999994

>PLN00106 malate dehydrogenase

Probab=100.00  E-value=2.8e-63  Score=461.59  Aligned_cols=274  Identities=78%  Similarity=1.162  Sum_probs=251.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      .+.||+||||+|+||+++++.|+.+++++||+|+|+++++++++||+|+..+..+..+.+++|++++++|||+||++||.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~   96 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV   96 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence            45699999977999999999999999999999999988899999999998765666544566788999999999999999


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHHHHHH
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA  186 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~~~la  186 (300)
                      |++||++|+|++..|.++++++++++++++|+++++++|||+|.++++++++.++.+++||+|++|++.||++||++++|
T Consensus        97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LDs~Rl~~~lA  176 (323)
T PLN00106         97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVA  176 (323)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988998866666679999999999999999999999


Q ss_pred             HHcCCCCCceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHHHHHHHHH
Q 022263          187 GKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC  266 (300)
Q Consensus       187 ~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i~ai  266 (300)
                      +++|+++.+|+++|+|||||++|||+||++++...++++++++|.++++++|++|+++|.|||+|+||+|.++++++++|
T Consensus       177 ~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~a~~~ii~ai  256 (323)
T PLN00106        177 EKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAYAAARFADAC  256 (323)
T ss_pred             HHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHHHHHHHHHHH
Confidence            99999999999999999988899999999987655666678999999999999999975578999999999999999999


Q ss_pred             HccCCCCCCceeeeeeeCCCCCcCEEEEeEEecC
Q 022263          267 LKGLNGVPDVVECSFVQSTVTELPFFASKRAWKN  300 (300)
Q Consensus       267 ~~~~~~~~~v~~~s~v~~~~~~~~~~S~Pv~lg~  300 (300)
                      ++|+++++.++|||++++++.+++|||+||++|+
T Consensus       257 l~~~~~~~~v~~~s~~~~~~~~~v~~s~P~~ig~  290 (323)
T PLN00106        257 LRGLNGEADVVECSYVQSEVTELPFFASKVRLGR  290 (323)
T ss_pred             HhccCCCceEEEEEEECcccCCceEEEEEEEEcC
Confidence            9998888899999998887643499999999985

>PTZ00325 malate dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-60  Score=441.88  Aligned_cols=273  Identities=59%  Similarity=0.889  Sum_probs=241.8

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      -.+|+||+||||+|+||+++++.|+..++++||+|+|+++++++++||+|+.....+.......+++++++|||+||+++
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita   84 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA   84 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence            35788999999779999999999998899999999999778999999999875433443221123358999999999999


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHHHH
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTF  184 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~~~  184 (300)
                      |.+++++++|.+++..|++++++++++|++++|+++++++|||+|.|+++..+..++.+++||+||||++.|||+||+++
T Consensus        85 G~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~  164 (321)
T PTZ00325         85 GVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKF  164 (321)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988877643333444599999999988999999999


Q ss_pred             HHHHcCCCCCceEEEEEecCCCC-ceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHHHHHH
Q 022263          185 YAGKANVNVAEVNVPVVGGHAGI-TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFA  263 (300)
Q Consensus       185 la~~l~v~~~~V~~~v~G~h~g~-t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i  263 (300)
                      +|++++++|++|++|||||| |+ +|||+||++  +..++++++++|.++++++|++|+++|.|||+|+||||.++++++
T Consensus       165 la~~l~v~~~~V~~~VlGeH-Gd~s~v~~~S~~--g~~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~  241 (321)
T PTZ00325        165 VAEALGMNPYDVNVPVVGGH-SGVTIVPLLSQT--GLSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWS  241 (321)
T ss_pred             HHHHhCcChhheEEEEEeec-CCcccccchhcc--CCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHH
Confidence            99999999999999999999 56 899999999  445667779999999999999999987677999999999999999


Q ss_pred             HHHHccCCCCCCceeeeeeeCCCC-CcCEEEEeEEecC
Q 022263          264 DACLKGLNGVPDVVECSFVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       264 ~ai~~~~~~~~~v~~~s~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      ++|++|+++++.+++|++++|+|+ +++|||.||++|+
T Consensus       242 ~ail~~~~~~~~v~~~~~~~g~yg~~~v~~s~P~~ig~  279 (321)
T PTZ00325        242 TSVLKALRGDKGIVECAFVESDMRPECPFFSSPVELGK  279 (321)
T ss_pred             HHHHhhcCCCCCeEEEEEEecCCCCCCeEEEEEEEEcC
Confidence            999998777889999999999995 7999999999985

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=2.3e-60  Score=440.36  Aligned_cols=256  Identities=24%  Similarity=0.325  Sum_probs=227.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC---CcEEEEecCCccccccCCCCEEEEcC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR---SEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~---~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|+...   ..++.+.  .| +++++|||+||++|
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~-y~~~~~aDivvita   76 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GD-YDDCADADIIVITA   76 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CC-HHHhCCCCEEEECC
Confidence            7999996 999999999999999999999999965  68999999997542   2455553  35 48899999999999


Q ss_pred             CCCCCCCCc--chhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHH
Q 022263          105 GVPRKPGMT--RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (300)
Q Consensus       105 g~~~~~g~~--r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~  181 (300)
                      |.|++||++  |+|++..|++|++++++++++++|++++|++|||+|+|||++   ++.++ ||++|+||+ |.|||+||
T Consensus        77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~---~k~sg-~p~~rviG~gt~LDs~R~  152 (307)
T cd05290          77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA---ATEFD-YPANKVIGTGTMLDTARL  152 (307)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH---HHHhC-cChhheecccchHHHHHH
Confidence            999999999  699999999999999999999999999999999999776653   44555 999999999 89999999


Q ss_pred             HHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCCC----------CCHHHHHHHHHHHhchhhhhhhhccCCCCC
Q 022263          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN----------LADEDIKALTKRTQDGGTEVVEAKAGKGSA  251 (300)
Q Consensus       182 ~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~----------~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t  251 (300)
                      ++++|+++++++++|++|||||| |++|||+||++++++.          .++.++++|.++++++|++|++   +||+|
T Consensus       153 ~~~la~~l~v~~~~V~~~ViGeH-Gds~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~KG~t  228 (307)
T cd05290         153 RRIVADKYGVDPKNVTGYVLGEH-GSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFN---RKGWT  228 (307)
T ss_pred             HHHHHHHhCCCcccEEEEEEecC-CCceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH---ccCee
Confidence            99999999999999999999999 6899999999987641          1233478999999999999998   57899


Q ss_pred             ccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263          252 TLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       252 ~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                      +||+|.++++++++|+.|   ++.++|+| +++|+| ++++|||+||++|+
T Consensus       229 ~~~ia~a~~~ii~ail~d---~~~v~~vsv~~~G~yg~~~v~~svP~~ig~  276 (307)
T cd05290         229 NAGIAKSASRLIKAILLD---ERSILPVCTLLSGEYGLSDVALSLPTVIGA  276 (307)
T ss_pred             hHHHHHHHHHHHHHHHhC---CCeEEEEEEeeCCccCCCCEEEEEEEEEeC
Confidence            999999999999999987   57899988 688888 57899999999985

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2.8e-60  Score=417.92  Aligned_cols=258  Identities=25%  Similarity=0.406  Sum_probs=231.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC---CcEEEEecCCccccccCCCCEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR---SEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~---~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      +..||.|+|+ |+||.++|+.++.+++.+||+|+|.++  .+|++|||+|....   +++..   ..|+ .+.+++++||
T Consensus        19 ~~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~---~~Dy-~~sa~S~lvI   93 (332)
T KOG1495|consen   19 KHNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVA---SKDY-SVSANSKLVI   93 (332)
T ss_pred             cCceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEe---cCcc-cccCCCcEEE
Confidence            3569999996 999999999999999999999999964  69999999998742   23332   3465 7899999999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHH
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR  180 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R  180 (300)
                      +|||..+++|++|++++++|+.|++.+.+++.+|.||++++++|||+|.|||+   +|+.+| ||++|+||. |.|||+|
T Consensus        94 iTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv---~wKLSg-fP~nRViGsGcnLDsaR  169 (332)
T KOG1495|consen   94 ITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYV---TWKLSG-FPKNRVIGSGCNLDSAR  169 (332)
T ss_pred             EecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHH---HHHHcC-CcccceeccCcCccHHH
Confidence            99999999999999999999999999999999999999999999999976665   466665 999999999 8999999


Q ss_pred             HHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC------------CCCHHHHHHHHHHHhchhhhhhhhccCC
Q 022263          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEVVEAKAGK  248 (300)
Q Consensus       181 ~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~------------~~~~~~~~~i~~~v~~~g~~i~~~~~gk  248 (300)
                      ||++++++||++|+++++||+||| ||+.||+||.+++.+            ..+++.|+++-+++.+.++||+++   |
T Consensus       170 FryLi~~~Lg~~pss~hgwIiGEH-GdSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayevikl---K  245 (332)
T KOG1495|consen  170 FRYLIGNRLGVHPSSCHGWIIGEH-GDSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKL---K  245 (332)
T ss_pred             HHHHHHHHhCCCcccceEEEeecc-CCccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHh---c
Confidence            999999999999999999999999 689999999997652            356788999999999999999996   5


Q ss_pred             CCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263          249 GSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWKN  300 (300)
Q Consensus       249 g~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg~  300 (300)
                      |+|+|++|.++++++++|++|+   +.+.|+| -++|.|  .+++|||+||.||+
T Consensus       246 GyTswaIglsva~l~~ail~n~---~~i~~Vst~~kg~~gI~~dVflSlPc~l~~  297 (332)
T KOG1495|consen  246 GYTSWAIGLSVADLAQAILRNL---RRIHPVSTMVKGLYGIDDDVFLSLPCLLGA  297 (332)
T ss_pred             CchHHHHHHHHHHHHHHHHhCc---CceeeeeeccccccCCCCceEEecceeecC
Confidence            9999999999999999999984   5688888 589888  47999999999985

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=100.00  E-value=5.5e-60  Score=440.12  Aligned_cols=264  Identities=30%  Similarity=0.379  Sum_probs=229.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecCC----cccHHHHhccccCCC--cEEEEecCCcccccc
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTRS--EVAGYMGNDQLGQAL   94 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~~~--~v~~~~~t~d~~~a~   94 (300)
                      ++|.||+||||+|+||+++++.|+.+++++     ||+|+|+++    ++|+++||+|+..+.  .+...  +.+ ++++
T Consensus         1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~   77 (323)
T TIGR01759         1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--TDP-EEAF   77 (323)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--cCh-HHHh
Confidence            368899999977999999999999999999     999999943    689999999997431  23332  233 5899


Q ss_pred             CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      +|||+||++||.+++|||+|+|++..|++|+++++++|++++| +++++++|||+|+|||++   ++.+++||++||||+
T Consensus        78 ~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~k~s~g~p~~rViG~  154 (323)
T TIGR01759        78 KDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA---SKNAPDIPPKNFSAM  154 (323)
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH---HHHcCCCCHHHEEEe
Confidence            9999999999999999999999999999999999999999998 999999999999777663   455515999999999


Q ss_pred             eehhHHHHHHHHHHHcCCCCCceE-EEEEecCCCCceeeccCcCcCCC----C-CCHH-H-HHHHHHHHhchhhhhhhhc
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA----N-LADE-D-IKALTKRTQDGGTEVVEAK  245 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h~g~t~vp~~S~~~~~~----~-~~~~-~-~~~i~~~v~~~g~~i~~~~  245 (300)
                      |.|||+||++++|++++++|++|+ .+||||| |++|+|+||++++++    . ++++ + +++|.++++++|++|++  
T Consensus       155 t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~--  231 (323)
T TIGR01759       155 TRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNH-SNTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIE--  231 (323)
T ss_pred             eHHHHHHHHHHHHHHhCcChHHeEEeEEEecC-CCceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHh--
Confidence            999999999999999999999995 5699999 579999999998764    2 2333 2 68999999999999998  


Q ss_pred             cCCCCCccc-hHHHHHHHHHHHHccCCCCCCceeee-eeeC-CC--CCcCEEEEeEEecC
Q 022263          246 AGKGSATLS-MAYAGAIFADACLKGLNGVPDVVECS-FVQS-TV--TELPFFASKRAWKN  300 (300)
Q Consensus       246 ~gkg~t~~~-~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~-~~--~~~~~~S~Pv~lg~  300 (300)
                       +||+|+|+ +|.|+++++++|++|++. +.++||| |++| +|  |+++|||+||+||+
T Consensus       232 -~kG~t~~~~~a~a~~~iv~ail~~~~~-~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~  289 (323)
T TIGR01759       232 -ARGASSAASAANAAIDHVRDWVTGTPE-GDWVSMGVYSDGNPYGIPEGIIFSFPVTCKG  289 (323)
T ss_pred             -ccCCcchHHHHHHHHHHHHHHHcCCCC-CcEEEEEEEeCCcccCCCCCeEEEEEEEEcC
Confidence             47899995 779999999999998531 6799999 7899 88  47999999999995

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=4.8e-60  Score=418.30  Aligned_cols=287  Identities=70%  Similarity=1.035  Sum_probs=275.7

Q ss_pred             cccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccc
Q 022263           14 KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA   93 (300)
Q Consensus        14 ~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a   93 (300)
                      ++.-.|.|+....++.||+|.||+|-+|+.+.++|.++++.+++.|||+....|.+.||+|...+..+..+.+...++++
T Consensus        14 ~~~~~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~a   93 (345)
T KOG1494|consen   14 SSGPKRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENA   93 (345)
T ss_pred             ccCCcccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHH
Confidence            44567789999999999999999999999999999999999999999999899999999999988889998888889999


Q ss_pred             cCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      +++||+|||-||+||||||+|+||+..|+.|+++++..+.++||+|.+.++|||+|+.++++++++++.|.|+|+|++|+
T Consensus        94 l~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGV  173 (345)
T KOG1494|consen   94 LKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGV  173 (345)
T ss_pred             hcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceece
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eehhHHHHHHHHHHHcCCCC-CceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCc
Q 022263          174 TTLDVVRAKTFYAGKANVNV-AEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~-~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~  252 (300)
                      |.||..|.++++++.++++| ++++++|+|+|.|.|++|++|+.++...+++++++.++.+++.+|.|+.+.|.|+||+.
T Consensus       174 TtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSAT  253 (345)
T KOG1494|consen  174 TTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAGSAT  253 (345)
T ss_pred             ehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCCCchh
Confidence            99999999999999999999 55999999999999999999999998889999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHccCCCCCCceeeeeeeCCCCCcCEEEEeEEecC
Q 022263          253 LSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKRAWKN  300 (300)
Q Consensus       253 ~~~A~a~~~~i~ai~~~~~~~~~v~~~s~v~~~~~~~~~~S~Pv~lg~  300 (300)
                      +|+|+|.++++.+.+++++++..++.|+||++...+..||++|++||+
T Consensus       254 LSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~~fFaspv~Lg~  301 (345)
T KOG1494|consen  254 LSMAYAGAKFADSLLRGLNGDEDVVECAFVASPVTELPFFATPVTLGK  301 (345)
T ss_pred             hhHHHHHHHHHHHHHHHhCCCCCeEEEeEEeccccCccceeceEEecC
Confidence            999999999999999999999999999999998767789999999996

>PRK05086 malate dehydrogenase; Provisional

Probab=100.00  E-value=2.8e-59  Score=434.54  Aligned_cols=270  Identities=56%  Similarity=0.855  Sum_probs=239.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHh-CCCCCEEEEEecCC-cccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~-~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      |||+||||+|.+|+++++.|.. .+...+++|+|+++ ..++++|++|......+... ..+|++++++|+|+||+++|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~-~~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEe-CCCCHHHHcCCCCEEEEcCCC
Confidence            7999999889999999998865 56678999999865 46778999985322234431 134666899999999999999


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHHHHHH
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA  186 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~~~la  186 (300)
                      +++++++|.|++..|+++++++++.|++++|+++++++|||+|+||+++++.+++.+++|++||||+|.|||+|+++++|
T Consensus        80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia  159 (312)
T PRK05086         80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA  159 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988776666669999999999999999999999


Q ss_pred             HHcCCCCCceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHHHHHHHHH
Q 022263          187 GKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC  266 (300)
Q Consensus       187 ~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i~ai  266 (300)
                      +++++++++|+++||||||+++|||+||++ .+..++++++++|.++++++|++|++.|.|||+|+||+|.|+++++++|
T Consensus       160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai  238 (312)
T PRK05086        160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL  238 (312)
T ss_pred             HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHH
Confidence            999999999999999999877999999999 4456777779999999999999999976577999999999999999999


Q ss_pred             HccCCCCCCceeeeeeeCCCCCcCEEEEeEEecC
Q 022263          267 LKGLNGVPDVVECSFVQSTVTELPFFASKRAWKN  300 (300)
Q Consensus       267 ~~~~~~~~~v~~~s~v~~~~~~~~~~S~Pv~lg~  300 (300)
                      ++++++++.++|+++++++..+++|||+||++|+
T Consensus       239 ~~~~~~~~~v~~~~~~~~~g~~~v~~s~P~~ig~  272 (312)
T PRK05086        239 VRALQGEQGVVECAYVEGDGKYARFFAQPVLLGK  272 (312)
T ss_pred             HhcCCCCCcEEEEEEEeccCCcceEEEEEEEEcC
Confidence            9998888899998888887446899999999985

>PRK05442 malate dehydrogenase; Provisional

Probab=100.00  E-value=8.3e-60  Score=439.43  Aligned_cols=263  Identities=27%  Similarity=0.340  Sum_probs=229.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecCC----cccHHHHhccccCC--CcEEEEecCCcccccc
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQAL   94 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~   94 (300)
                      ++|+||+||||+|+||+++++.|...++++     ||+|+|+++    ++|+++||+|+.++  ..++..  +.+ ++++
T Consensus         2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~   78 (326)
T PRK05442          2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAF   78 (326)
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHh
Confidence            367899999977999999999999999998     999999943    68999999998733  233332  233 5899


Q ss_pred             CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      +|||+||++||.+++||++|+|++..|++|+++++++|++++ |++++|++|||+|+|||++   ++.+|+||++||||+
T Consensus        79 ~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~k~s~g~p~~rViG~  155 (326)
T PRK05442         79 KDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA---MKNAPDLPAENFTAM  155 (326)
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH---HHHcCCCCHHHEEee
Confidence            999999999999999999999999999999999999999988 7999999999999877663   466646999999999


Q ss_pred             eehhHHHHHHHHHHHcCCCCCceEEE-EEecCCCCceeeccCcCcCCC----C-CCH-HH-HHHHHHHHhchhhhhhhhc
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVNVP-VVGGHAGITILPLFSQATPKA----N-LAD-ED-IKALTKRTQDGGTEVVEAK  245 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~~~-v~G~h~g~t~vp~~S~~~~~~----~-~~~-~~-~~~i~~~v~~~g~~i~~~~  245 (300)
                      |.|||+||+++||++++++|++|+++ ||||| |++|||+||++++++    + +++ +| +++|.++++++|++|++  
T Consensus       156 t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeH-G~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~--  232 (326)
T PRK05442        156 TRLDHNRALSQLAAKAGVPVADIKKMTVWGNH-SATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIE--  232 (326)
T ss_pred             eHHHHHHHHHHHHHHhCcChHHeEEeEEEECC-cCceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHh--
Confidence            99999999999999999999999996 58999 579999999999874    1 333 32 67999999999999998  


Q ss_pred             cCCCCCccchHHH-HHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEec
Q 022263          246 AGKGSATLSMAYA-GAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWK  299 (300)
Q Consensus       246 ~gkg~t~~~~A~a-~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg  299 (300)
                       +||+|+|++|.+ +++++++|++|.+ ++.++||| +++|+|  |+++|||+||+||
T Consensus       233 -~kG~t~~~~a~~~~~~iv~ail~~~~-~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig  288 (326)
T PRK05442        233 -ARGASSAASAANAAIDHVRDWVLGTP-EGDWVSMGVPSDGSYGIPEGLIFGFPVTCE  288 (326)
T ss_pred             -CcCCccHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEEecCccCCcCCeEEEEEEEEc
Confidence             578999999999 5999999999853 46799999 578998  4899999999998

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=2.7e-59  Score=434.25  Aligned_cols=260  Identities=26%  Similarity=0.360  Sum_probs=228.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC-CcEEEEecCCccccccCCCCEEEEc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      +.+||+|||| |+||+++++.|+.+++.+||+|+|+++  ++|+++||+|+... ...... .++|+ ++++|||+||++
T Consensus         2 ~~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~-~~~dy-~~~~~adivvit   78 (312)
T cd05293           2 PRNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIE-ADKDY-SVTANSKVVIVT   78 (312)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEE-ECCCH-HHhCCCCEEEEC
Confidence            4579999996 999999999999999999999999965  68999999999732 112222 24566 579999999999


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHH
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~  182 (300)
                      ||.+++|||+|+|++..|+++++++++.|++++|++++|++|||+|.|+++    +++.+++|++|+||+ |.||++|++
T Consensus        79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~----~~k~sg~p~~~viG~gt~Ld~~R~~  154 (312)
T cd05293          79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYV----AWKLSGLPKHRVIGSGCNLDSARFR  154 (312)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHH----HHHHhCCCHHHEEecCchHHHHHHH
Confidence            999999999999999999999999999999999999999999999965554    334445999999999 899999999


Q ss_pred             HHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCCC------------CCHHHHHHHHHHHhchhhhhhhhccCCCC
Q 022263          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN------------LADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (300)
Q Consensus       183 ~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~------------~~~~~~~~i~~~v~~~g~~i~~~~~gkg~  250 (300)
                      +++|+++++++++|+++||||| |++|||+||++++++.            .+++++++|.++++++|++|++   +||+
T Consensus       155 ~~la~~l~v~~~~v~~~v~GeH-G~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~  230 (312)
T cd05293         155 YLIAERLGVAPSSVHGWIIGEH-GDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIK---LKGY  230 (312)
T ss_pred             HHHHHHhCCChhhEEEEEeecC-CCCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHH---hcCC
Confidence            9999999999999999999999 6899999999987631            1234588999999999999998   5789


Q ss_pred             CccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263          251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWKN  300 (300)
Q Consensus       251 t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg~  300 (300)
                      |+||+|.++++++++|++|   ++.+++++ +++|+|  ++++|||+||++|+
T Consensus       231 t~~~~a~a~~~ii~ail~d---~~~~~~vsv~~~g~yg~~~d~~~svP~~ig~  280 (312)
T cd05293         231 TSWAIGLSVADLVDAILRN---TGRVHSVSTLVKGLHGIEDEVFLSLPCILGE  280 (312)
T ss_pred             chHHHHHHHHHHHHHHHcC---CCeEEEEEEEeCCccCCCCCeEEEEeEEEeC
Confidence            9999999999999999987   56789988 688888  47999999999985

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02602 lactate dehydrogenase

Probab=100.00  E-value=6.4e-59  Score=436.71  Aligned_cols=258  Identities=24%  Similarity=0.402  Sum_probs=229.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC-CcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      +||+|||| |+||+++++.|+..++++||+|+|+++  ++|+++||+|+... ...+.. ++.|+ ++++|||+||++||
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~-~~~dy-~~~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL-ASTDY-AVTAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE-eCCCH-HHhCCCCEEEECCC
Confidence            69999996 999999999999999999999999965  58999999998632 123333 23455 67999999999999


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHHH
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~~  184 (300)
                      .+++||++|.|++..|++|+++++++|+++||++++|++|||+|++|+++   ++.+| ||++||||+ |.||++|++++
T Consensus       115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~---~k~sg-~p~~rviG~gt~LDs~R~r~~  190 (350)
T PLN02602        115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVA---WKLSG-FPANRVIGSGTNLDSSRFRFL  190 (350)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH---HHHhC-CCHHHEEeecchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999776653   55666 999999999 59999999999


Q ss_pred             HHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC------------CCCHHHHHHHHHHHhchhhhhhhhccCCCCCc
Q 022263          185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (300)
Q Consensus       185 la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~------------~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~  252 (300)
                      +|+++++++++|+++||||| |+++||+||++++++            .+++++++++.++++++|++|++   +||+|+
T Consensus       191 lA~~l~v~~~~V~~~ViGeH-Gds~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~---~KG~t~  266 (350)
T PLN02602        191 IADHLDVNAQDVQAYIVGEH-GDSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIK---LKGYTS  266 (350)
T ss_pred             HHHHhCCCccceeeeEEecC-CCceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHh---cCCccH
Confidence            99999999999999999999 589999999998642            24456689999999999999998   578999


Q ss_pred             cchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC---CcCEEEEeEEecC
Q 022263          253 LSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT---ELPFFASKRAWKN  300 (300)
Q Consensus       253 ~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~---~~~~~S~Pv~lg~  300 (300)
                      ||+|.++++++++|++|   ++.++||| +++|+|+   +++|||+||++|+
T Consensus       267 ~gia~a~a~ii~ail~d---~~~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~  315 (350)
T PLN02602        267 WAIGYSVASLVRSLLRD---QRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGR  315 (350)
T ss_pred             HHHHHHHHHHHHHHHhc---CCCeEEEEEecccccCCCCCCcEEEEEEEEeC
Confidence            99999999999999997   57899999 5788883   7899999999985

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=100.00  E-value=5.4e-59  Score=430.08  Aligned_cols=253  Identities=25%  Similarity=0.403  Sum_probs=223.8

Q ss_pred             EEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCC--cEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (300)
Q Consensus        33 IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~--~v~~~~~t~d~~~a~~~aDiVIi~ag~~~  108 (300)
                      |||+ |+||+++++.|+..++++||+|+|+++  ++|+++||+|+....  .++..  ..+ +++++|||+||++||.|+
T Consensus         1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~daDivVitag~~r   76 (299)
T TIGR01771         1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR--SGD-YSDCKDADLVVITAGAPQ   76 (299)
T ss_pred             CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe--cCC-HHHHCCCCEEEECCCCCC
Confidence            6895 999999999999999999999999965  689999999987432  34433  234 478999999999999999


Q ss_pred             CCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHHHHHH
Q 022263          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAG  187 (300)
Q Consensus       109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~~la~  187 (300)
                      +|||+|.|++..|++++++++++|++++|++++|++|||+|+||+++   ++.+ ++|++||||+ |.|||+|+++++|+
T Consensus        77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~---~~~s-g~p~~~viG~gt~LDs~R~~~~la~  152 (299)
T TIGR01771        77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVA---WKLS-GFPKNRVIGSGTVLDTARLRYLLAE  152 (299)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH---HHHh-CCCHHHEEeccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999665543   3444 5999999999 79999999999999


Q ss_pred             HcCCCCCceEEEEEecCCCCceeeccCcCcCCC----CC-------CHHHHHHHHHHHhchhhhhhhhccCCCCCccchH
Q 022263          188 KANVNVAEVNVPVVGGHAGITILPLFSQATPKA----NL-------ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (300)
Q Consensus       188 ~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----~~-------~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A  256 (300)
                      ++++++++|+++||||| |++|||+||++++++    .+       +++++++|.++++++|++|++   +||+|+||+|
T Consensus       153 ~l~v~~~~V~~~v~GeH-G~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kG~t~~~~a  228 (299)
T TIGR01771       153 KLGVDPQSVHAYIIGEH-GDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIIN---RKGATYYGIG  228 (299)
T ss_pred             HhCcCcCeEEEEEEecC-CCceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhh---cCCeeeHHHH
Confidence            99999999999999999 689999999998754    11       133578999999999999998   5789999999


Q ss_pred             HHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          257 YAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       257 ~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      .|+++++++|++|   ++.++||| +++|+|+ +++|||+||++|+
T Consensus       229 ~a~~~~i~ail~d---~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~  271 (299)
T TIGR01771       229 MAVARIVEAILHD---ENRVLPVSAYLDGEYGIKDVYIGVPAVLGR  271 (299)
T ss_pred             HHHHHHHHHHHcC---CCcEEEEEEEecccCCCCCEEEEEEEEEeC
Confidence            9999999999997   57899998 7899984 6899999999985

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>cd00704 MDH Malate dehydrogenase

Probab=100.00  E-value=2.7e-58  Score=429.26  Aligned_cols=261  Identities=30%  Similarity=0.369  Sum_probs=226.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecCC----cccHHHHhccccCC--CcEEEEecCCccccccCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDS   97 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~~a   97 (300)
                      .||+||||+|+||+++++.|+++++++     +|+|+|+++    ++|+++||.|+.++  ......   .+.+++++||
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~---~~~~~~~~~a   77 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT---TDPEEAFKDV   77 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe---cChHHHhCCC
Confidence            489999977999999999999999988     599999975    58999999998632  122322   2345899999


Q ss_pred             CEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeh
Q 022263           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL  176 (300)
Q Consensus        98 DiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~L  176 (300)
                      |+||++||.|++||++|+|++..|++|+++++++|++++ |++++|++|||+|+||++   +++.+|.+|++||||+|.|
T Consensus        78 DiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~---~~k~sg~~p~~~vig~t~L  154 (323)
T cd00704          78 DVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALI---ALKNAPNLPPKNFTALTRL  154 (323)
T ss_pred             CEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHH---HHHHcCCCCHHHEEEeeHH
Confidence            999999999999999999999999999999999999996 999999999999977665   3555653599999999999


Q ss_pred             hHHHHHHHHHHHcCCCCCce-EEEEEecCCCCceeeccCcCcCCCC---------CCHHH-HHHHHHHHhchhhhhhhhc
Q 022263          177 DVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKAN---------LADED-IKALTKRTQDGGTEVVEAK  245 (300)
Q Consensus       177 ds~R~~~~la~~l~v~~~~V-~~~v~G~h~g~t~vp~~S~~~~~~~---------~~~~~-~~~i~~~v~~~g~~i~~~~  245 (300)
                      ||+|||++||++++++|++| +++||||| |++++|+||++++++.         +++++ .++|.++++++|++|++  
T Consensus       155 Ds~R~r~~la~~l~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~--  231 (323)
T cd00704         155 DHNRAKAQVARKLGVRVSDVKNVIIWGNH-SNTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIK--  231 (323)
T ss_pred             HHHHHHHHHHHHhCcCHHHceeeeEEecc-cCceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHh--
Confidence            99999999999999999999 56899999 5699999999987641         34442 68999999999999998  


Q ss_pred             cCCCCCccc-hHHHHHHHHHHHHccCCCCCCceeee-eeeCCC---CCcCEEEEeEEecC
Q 022263          246 AGKGSATLS-MAYAGAIFADACLKGLNGVPDVVECS-FVQSTV---TELPFFASKRAWKN  300 (300)
Q Consensus       246 ~gkg~t~~~-~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~---~~~~~~S~Pv~lg~  300 (300)
                       +||+|+|+ +|.|+++++++|++|.++. .++||| +++|+|   |+++|||+||+||+
T Consensus       232 -~kg~t~~~~~a~a~~~iv~ail~~~~~~-~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~  289 (323)
T cd00704         232 -KRGASSAASAAKAIADHVKDWLFGTPPG-EIVSMGVYSPGNPYGIPPGIVFSFPCTCKG  289 (323)
T ss_pred             -ccCcchhHHHHHHHHHHHHHHHhCCCCC-cEEEEEEEeCCccCCCCCceEEEEEEEEcC
Confidence             46889997 6999999999999985433 799998 789988   37899999999995

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=100.00  E-value=3.3e-58  Score=440.80  Aligned_cols=264  Identities=27%  Similarity=0.272  Sum_probs=228.1

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhC-------CCCCEEEEEecCC--cccHHHHhccccCCC--cEEEEecCCccccc
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLN-------PLVSRLALYDIAN--TPGVAADVGHINTRS--EVAGYMGNDQLGQA   93 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~-------~~~~el~L~D~~~--~~g~~~dl~~~~~~~--~v~~~~~t~d~~~a   93 (300)
                      .+++.||+||||+|+||+++++.|+.+       ++++||+|+|+++  ++|++|||+|+.++.  .+...  +.+ +++
T Consensus        97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~--~~~-ye~  173 (444)
T PLN00112         97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG--IDP-YEV  173 (444)
T ss_pred             CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe--cCC-HHH
Confidence            356789999997799999999999998       6667999999965  689999999987432  33322  334 589


Q ss_pred             cCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHh-hCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-YCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~-~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG  172 (300)
                      ++|||+||++||.|++|||+|.|++..|++|+++++++|++ ++|++++|++|||+|+||+++   ++.+| ++++|+||
T Consensus       174 ~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~---~k~sg-~~~~rViG  249 (444)
T PLN00112        174 FQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALIC---LKNAP-NIPAKNFH  249 (444)
T ss_pred             hCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHH---HHHcC-CCCcceEE
Confidence            99999999999999999999999999999999999999999 599999999999999877663   45555 89999999


Q ss_pred             e-eehhHHHHHHHHHHHcCCCCCce-EEEEEecCCCCceeeccCcCcCCC-C----CCH-HH-HHHHHHHHhchhhhhhh
Q 022263          173 V-TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA-N----LAD-ED-IKALTKRTQDGGTEVVE  243 (300)
Q Consensus       173 ~-t~Lds~R~~~~la~~l~v~~~~V-~~~v~G~h~g~t~vp~~S~~~~~~-~----~~~-~~-~~~i~~~v~~~g~~i~~  243 (300)
                      + |.|||+||+++||+++++++++| +++||||| |++|||+||++++++ .    +++ ++ +++|.++++++|++|++
T Consensus       250 tgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeH-Gdsqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~  328 (444)
T PLN00112        250 ALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNH-STTQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIK  328 (444)
T ss_pred             eeccHHHHHHHHHHHHHhCcCHHHcccceEEecC-CCceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHh
Confidence            9 79999999999999999999999 56999999 579999999999864 1    222 22 68999999999999998


Q ss_pred             hccCCCCCcc-chHHHHHHHHHHHHccCCCCCCceeee-eeeCC-C--CCcCEEEEeEEecC
Q 022263          244 AKAGKGSATL-SMAYAGAIFADACLKGLNGVPDVVECS-FVQST-V--TELPFFASKRAWKN  300 (300)
Q Consensus       244 ~~~gkg~t~~-~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~-~--~~~~~~S~Pv~lg~  300 (300)
                         +||+|+| ++|.++++++++|+++. +++.|+||| +++|+ |  ++++|||+||++|+
T Consensus       329 ---~kG~t~~~s~a~ai~~~I~ail~~~-d~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~  386 (444)
T PLN00112        329 ---KWGRSSAASTAVSIADAIKSLVTPT-PEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKG  386 (444)
T ss_pred             ---ccCchhHHHHHHHHHHHHHHHHcCC-CCCeEEEEEEEeCCcccCCCCCeEEEeEEEEeC
Confidence               4677877 99999999999999543 378999999 67884 8  48999999999984

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=100.00  E-value=1.5e-57  Score=423.49  Aligned_cols=260  Identities=27%  Similarity=0.415  Sum_probs=230.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC-CcEEEEecCCccccccCCCCEEEE
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      +.++||+|||| |+||+++++.|+..++++||+|+|+++  ++|+++||+|+... ..+....  +++ ++++|||+||+
T Consensus         4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~--~~~-~~~~~adivIi   79 (315)
T PRK00066          4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA--GDY-SDCKDADLVVI   79 (315)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe--CCH-HHhCCCCEEEE
Confidence            34579999996 999999999999999999999999965  58999999998632 2344432  344 78999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHH
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~  181 (300)
                      +||.|++||++|.|++..|+++++++++++++++|+++++++|||+|+|++++   ++.++ +|++||||+ |.|||+|+
T Consensus        80 tag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~---~k~sg-~p~~~viG~gt~LDs~R~  155 (315)
T PRK00066         80 TAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYAT---WKLSG-FPKERVIGSGTSLDSARF  155 (315)
T ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHH---HHHhC-CCHHHEeecCchHHHHHH
Confidence            99999999999999999999999999999999999999999999999766653   45555 999999999 69999999


Q ss_pred             HHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-----------CCCHHHHHHHHHHHhchhhhhhhhccCCCC
Q 022263          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----------NLADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (300)
Q Consensus       182 ~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-----------~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~  250 (300)
                      ++++|+++++++++|+++||||| |++++|+||++++++           .+++++++++.++++++|++|++   +||+
T Consensus       156 ~~~la~~l~v~~~~V~~~viGeH-G~s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kg~  231 (315)
T PRK00066        156 RYMLSEKLDVDPRSVHAYIIGEH-GDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIE---KKGA  231 (315)
T ss_pred             HHHHHHHhCCCcccEEEEEEecC-CCcceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHh---cCCe
Confidence            99999999999999999999999 689999999998753           13445688999999999999998   5789


Q ss_pred             CccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263          251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       251 t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                      |+||+|.++++++++|+++   ++.++|+| +++|+| ++++|||+||++|+
T Consensus       232 t~~~~a~~~~~i~~ail~~---~~~v~~~sv~~~g~yg~~~v~~S~Pv~ig~  280 (315)
T PRK00066        232 TYYGIAMALARITKAILNN---ENAVLPVSAYLEGQYGEEDVYIGVPAVVNR  280 (315)
T ss_pred             ehHHHHHHHHHHHHHHHcC---CCeEEEEEEEeccccCCCCEEEEeEEEEeC
Confidence            9999999999999999996   67899999 688888 57999999999985

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=100.00  E-value=6.9e-58  Score=432.71  Aligned_cols=265  Identities=28%  Similarity=0.289  Sum_probs=226.1

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEE--ecCC--cccHHHHhccccCC--CcEEEEecCCcccc
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALY--DIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQ   92 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~--D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~   92 (300)
                      ...+|.||+||||+|+||+++|+.|+.+++++     +|+|+  |+++  ++|+++||+|+.++  ..+...  +.+ ++
T Consensus        40 ~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~-y~  116 (387)
T TIGR01757        40 SWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDP-YE  116 (387)
T ss_pred             cCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCC-HH
Confidence            34567899999977999999999999999998     57777  5543  68999999998743  233322  234 58


Q ss_pred             ccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEE
Q 022263           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF  171 (300)
Q Consensus        93 a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kvi  171 (300)
                      +++|||+||++||.|++||++|.|++..|++|++++++.|++++ |++++|++|||+|+||+++   ++.++ +||+|+|
T Consensus       117 ~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~---~k~sg-~~~~rvi  192 (387)
T TIGR01757       117 VFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIA---MKNAP-NIPRKNF  192 (387)
T ss_pred             HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHH---HHHcC-CCcccEE
Confidence            99999999999999999999999999999999999999999987 9999999999999877663   45555 8999999


Q ss_pred             Ee-eehhHHHHHHHHHHHcCCCCCce-EEEEEecCCCCceeeccCcCcCCC-C----CCH-H-HHHHHHHHHhchhhhhh
Q 022263          172 GV-TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA-N----LAD-E-DIKALTKRTQDGGTEVV  242 (300)
Q Consensus       172 G~-t~Lds~R~~~~la~~l~v~~~~V-~~~v~G~h~g~t~vp~~S~~~~~~-~----~~~-~-~~~~i~~~v~~~g~~i~  242 (300)
                      |+ |.|||+||+++||+++++++++| +++||||| |++|||+||++++++ .    +++ + .+++|.++++++|++|+
T Consensus       193 G~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeH-Gds~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi  271 (387)
T TIGR01757       193 HALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNH-STTQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALI  271 (387)
T ss_pred             EecchhHHHHHHHHHHHHHCcChhHcceeEEEecC-CCcEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHH
Confidence            99 89999999999999999999999 59999999 589999999998764 1    222 2 26899999999999999


Q ss_pred             hhccCCCCCcc-chHHHHHHHHHHHHccCCCCCCceeee-eeeCC-C--CCcCEEEEeEEecC
Q 022263          243 EAKAGKGSATL-SMAYAGAIFADACLKGLNGVPDVVECS-FVQST-V--TELPFFASKRAWKN  300 (300)
Q Consensus       243 ~~~~gkg~t~~-~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~-~--~~~~~~S~Pv~lg~  300 (300)
                      +   +||+|+| ++|.++++++++|+++. +++.++|+| +++|+ |  ++++|||+||++|+
T Consensus       272 ~---~KG~t~~~s~a~ai~~~i~ai~~g~-d~~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~  330 (387)
T TIGR01757       272 K---KWGRSSAASTAVSIADAIKSLVVPT-PEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKG  330 (387)
T ss_pred             h---ccCchhHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEEeCCcccCCCCCEEEEEEEEEeC
Confidence            8   4677777 99999999999999543 267899999 57885 8  48999999999984

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=100.00  E-value=2.4e-57  Score=422.71  Aligned_cols=263  Identities=26%  Similarity=0.324  Sum_probs=229.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecC--C--cccHHHHhccccCC--CcEEEEecCCccccccC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIA--N--TPGVAADVGHINTR--SEVAGYMGNDQLGQALE   95 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~--~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~   95 (300)
                      +|+||+||||+|+||+++++.|+++++++     ||+|+|++  .  ++|+++||+|+.++  ..++..  +.+ +++++
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~   77 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFK   77 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhC
Confidence            46899999977999999999999999999     99999994  3  68999999998743  234433  234 58999


Q ss_pred             CCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee
Q 022263           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t  174 (300)
                      |||+||++||.|++||++|+|++..|++|+++++++|++++ |++++|++|||+|+|||++   ++.+|++|+++|+|+|
T Consensus        78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~---~k~sg~~p~~~ViG~t  154 (322)
T cd01338          78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA---MKNAPDIPPDNFTAMT  154 (322)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH---HHHcCCCChHheEEeh
Confidence            99999999999999999999999999999999999999999 5999999999999877663   4566469999999999


Q ss_pred             ehhHHHHHHHHHHHcCCCCCceEE-EEEecCCCCceeeccCcCcCCC-C----CCHH--HHHHHHHHHhchhhhhhhhcc
Q 022263          175 TLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKA-N----LADE--DIKALTKRTQDGGTEVVEAKA  246 (300)
Q Consensus       175 ~Lds~R~~~~la~~l~v~~~~V~~-~v~G~h~g~t~vp~~S~~~~~~-~----~~~~--~~~~i~~~v~~~g~~i~~~~~  246 (300)
                      .||++||++++|+++++++++|++ +||||| |++++|+||++++.+ .    +.+.  ++++|.++++++|++|++   
T Consensus       155 ~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeH-G~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~---  230 (322)
T cd01338         155 RLDHNRAKSQLAKKAGVPVTDVKNMVIWGNH-SPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIK---  230 (322)
T ss_pred             HHHHHHHHHHHHHHhCcChhHeEEEEEEeCC-cccEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHh---
Confidence            999999999999999999999998 569999 579999999998763 1    3333  268999999999999998   


Q ss_pred             CCCCCccchH-HHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263          247 GKGSATLSMA-YAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWKN  300 (300)
Q Consensus       247 gkg~t~~~~A-~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg~  300 (300)
                      +||+|+|++| .|+++++++|++|.+ .+.++||| +++|+|  |+++|||+||++|+
T Consensus       231 ~kG~t~~~~~a~a~~~iv~ail~~~~-~~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~  287 (322)
T cd01338         231 ARGASSAASAANAAIDHMRDWVLGTP-EGDWFSMAVPSDGSYGIPEGLIFSFPVRSKG  287 (322)
T ss_pred             CcCCccHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEccCccCCCCCeEEEEEEEEeC
Confidence            5789999999 599999999999854 24799999 578898  48999999999985

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=100.00  E-value=2e-56  Score=415.02  Aligned_cols=257  Identities=28%  Similarity=0.400  Sum_probs=225.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC--CcEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +||+|||+ |.+|+++++.|+..++..+|+|+|+++  +++.++||+|+...  .......  .++ +++++||+||+++
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~--~~~-~~l~~aDIVIita   76 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA--GDY-SDCKDADIVVITA   76 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc--CCH-HHhCCCCEEEEcc
Confidence            38999995 999999999999999888999999965  57889999998642  2333332  344 6799999999999


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHH
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~  183 (300)
                      |.|++|||+|.|++.+|++++++++++|++++|++++|++|||+|+||++    +++.+++|++||||+ |.||++|+++
T Consensus        77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~----~~~~~g~p~~~v~g~gt~LDs~R~~~  152 (306)
T cd05291          77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYV----VQKLSGLPKNRVIGTGTSLDTARLRR  152 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHH----HHHHhCcCHHHEeeccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999965554    334455999999999 6999999999


Q ss_pred             HHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----------CCCHHHHHHHHHHHhchhhhhhhhccCCCCCcc
Q 022263          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEAKAGKGSATL  253 (300)
Q Consensus       184 ~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----------~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~  253 (300)
                      ++|+++++++++|+++||||| |++++|+||++++++          .+.+++++++.++++++|++|++   +||+|+|
T Consensus       153 ~la~~l~v~~~~v~~~V~G~H-g~s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~---~kg~t~~  228 (306)
T cd05291         153 ALAEKLNVDPRSVHAYVLGEH-GDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIIN---GKGATYY  228 (306)
T ss_pred             HHHHHHCCCcccceEEEEecC-CCceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHH---ccCccHH
Confidence            999999999999999999999 589999999998753          13355688999999999999998   5789999


Q ss_pred             chHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263          254 SMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       254 ~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                      ++|.|+++++++|+++   ++.++||| +++|+| .+++|||+||++|+
T Consensus       229 ~~a~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~v~~s~P~~ig~  274 (306)
T cd05291         229 GIATALARIVKAILND---ENAILPVSAYLDGEYGEKDVYIGVPAIIGR  274 (306)
T ss_pred             HHHHHHHHHHHHHHcC---CCEEEEEEEEeccccCCCCEEEEEEEEEeC
Confidence            9999999999999997   67899999 688888 57899999999985

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PTZ00117 malate dehydrogenase; Provisional

Probab=100.00  E-value=2.1e-55  Score=410.02  Aligned_cols=262  Identities=33%  Similarity=0.551  Sum_probs=229.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCC--cEEEEecCCccccccCCCCEEE
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~--~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      .+.+||+|||| |+||+++++.++..++ .+|+|+|+++  ++++++|+.|.....  ..+. .+++|+ ++++|||+||
T Consensus         3 ~~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i-~~~~d~-~~l~~ADiVV   78 (319)
T PTZ00117          3 VKRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI-LGTNNY-EDIKDSDVVV   78 (319)
T ss_pred             CCCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEE-EeCCCH-HHhCCCCEEE
Confidence            35579999996 9999999999999887 5899999976  578899999985322  2232 234576 4899999999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-ehhHHH
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVR  180 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t-~Lds~R  180 (300)
                      +++|.++++|++|.|++..|.++++++++.|+++||++|+|++|||+|.++++    +++.+++|++||+|+| .||++|
T Consensus        79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~----~~~~s~~p~~rviG~gt~lds~R  154 (319)
T PTZ00117         79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKV----FQEKSGIPSNKICGMAGVLDSSR  154 (319)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHH----HHHhhCCCcccEEEecchHHHHH
Confidence            99999999999999999999999999999999999999999999999965543    3344459999999996 899999


Q ss_pred             HHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----------CCCHHHHHHHHHHHhchhhhhhhhccCCCC
Q 022263          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (300)
Q Consensus       181 ~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----------~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~  250 (300)
                      +++++|+++++++++|+++|+||| |+++||+||++++++          .+++++++++.++++++|++|++.+ |||+
T Consensus       155 ~~~~la~~l~v~~~~v~~~viGeH-g~~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~  232 (319)
T PTZ00117        155 FRCNLAEKLGVSPGDVSAVVIGGH-GDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGS  232 (319)
T ss_pred             HHHHHHHHhCCCcccceEEEeecC-CCcEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCC
Confidence            999999999999999999999999 689999999998753          1455668899999999999999976 7899


Q ss_pred             CccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       251 t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      |+||+|.++++++++|++|   ++.++|+| +++|+|+ +++|||+||+||+
T Consensus       233 t~~~~a~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~  281 (319)
T PTZ00117        233 AFFAPAAAIVAMIEAYLKD---EKRVLVCSVYLNGQYNCKNLFVGVPVVIGG  281 (319)
T ss_pred             hHHHHHHHHHHHHHHHhcC---CCeEEEEEEEeccccCCCCeEEEEEEEEeC
Confidence            9999999999999999997   57899999 7899984 5899999999985

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=100.00  E-value=9.3e-56  Score=409.33  Aligned_cols=256  Identities=29%  Similarity=0.416  Sum_probs=225.5

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC-CcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      |+|||+ |.||+++++.|+..++++||+|+|+++  .+|+++||+|...+ ...+... ++|+ +++++||+||+++|.|
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~~-~~l~~aDiVIitag~p   77 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGDY-ADAADADIVVITAGAP   77 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCCH-HHhCCCCEEEEcCCCC
Confidence            689996 999999999999999999999999965  58999999998754 2233332 3454 7899999999999999


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHHHHH
Q 022263          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYA  186 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~~la  186 (300)
                      ++|||+|.|++.+|++++++++++|+++||++++|++|||+|.++++   +++.+| +|++||+|+ |.|||+|+++++|
T Consensus        78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~---~~~~sg-~~~~kviG~gt~lDs~r~~~~la  153 (300)
T cd00300          78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYV---AQKLSG-LPKNRVIGSGTLLDSARFRSLLA  153 (300)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHH---HHHHhC-cCHHHEEecCCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999965554   244555 999999999 6999999999999


Q ss_pred             HHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-C------CCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHH
Q 022263          187 GKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N------LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAG  259 (300)
Q Consensus       187 ~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-~------~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~  259 (300)
                      +++++++++|+++|+||| |+++||+||++++++ +      .+++.++++.++++++|++|++   +||+|+||+|.++
T Consensus       154 ~~l~v~~~~v~~~viGeH-g~s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~---~kg~t~~~~a~a~  229 (300)
T cd00300         154 EKLDVDPQSVHAYVLGEH-GDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIR---LKGATNYGIATAI  229 (300)
T ss_pred             HHhCCCcccEEEEEEecc-CCceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHH---ccCcchHHHHHHH
Confidence            999999999999999999 689999999998764 1      1234578999999999999998   5789999999999


Q ss_pred             HHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263          260 AIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       260 ~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                      ++++++|+++   ++.++||| +++|+| .+++|||+||+||+
T Consensus       230 ~~~~~ai~~~---~~~v~~~s~~~~g~yg~~~~~~s~Pv~ig~  269 (300)
T cd00300         230 ADIVKSILLD---ERRVLPVSAVQEGQYGIEDVALSVPAVVGR  269 (300)
T ss_pred             HHHHHHHHcC---CCeEEEEEEEecCccCCCCEEEEEEEEEeC
Confidence            9999999997   57899999 578888 57999999999985

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=6.4e-55  Score=406.62  Aligned_cols=261  Identities=33%  Similarity=0.571  Sum_probs=228.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccC--CCcEEEEecCCccccccCCCCEEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      +.+||+|||| |+||+++++.++..++. +|+|+|+++  ++++++|+.|...  ....+.. .++|+ ++++|||+||+
T Consensus         5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~-~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~~~d~-~~l~~aDiVI~   80 (321)
T PTZ00082          5 KRRKISLIGS-GNIGGVMAYLIVLKNLG-DVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-GTNNY-EDIAGSDVVIV   80 (321)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-ECCCH-HHhCCCCEEEE
Confidence            3469999995 99999999999998884 699999976  4678999999753  1223332 34576 68999999999


Q ss_pred             cCCCCCCCCC-----cchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-eh
Q 022263          103 PAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TL  176 (300)
Q Consensus       103 ~ag~~~~~g~-----~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t-~L  176 (300)
                      ++|.+++||+     +|.+++..|.+++++++++|+++||++++|++|||+|.+++.    +.+.+++|++||+|+| .|
T Consensus        81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~----~~~~sg~p~~rviGlgt~l  156 (321)
T PTZ00082         81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKL----LQEHSGLPKNKVCGMAGVL  156 (321)
T ss_pred             CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHH----HHHhcCCChhhEEEecCcc
Confidence            9999999999     999999999999999999999999999999999999965544    3344459999999996 89


Q ss_pred             hHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----------CCCHHHHHHHHHHHhchhhhhhhhcc
Q 022263          177 DVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEAKA  246 (300)
Q Consensus       177 ds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----------~~~~~~~~~i~~~v~~~g~~i~~~~~  246 (300)
                      |++|+++++|+++++++++|+++|+||| |+++||+||++++++          .++++++++|.++++++|++|++++ 
T Consensus       157 ds~R~~~~la~~l~v~~~~v~~~viGeH-g~s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~-  234 (321)
T PTZ00082        157 DSSRLRTYIAEKLGVNPRDVHASVIGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL-  234 (321)
T ss_pred             cHHHHHHHHHHHhCCCcccceeeEEecC-CCceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-
Confidence            9999999999999999999999999999 689999999998753          1456668999999999999999986 


Q ss_pred             CCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          247 GKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       247 gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      |||+|+||+|.++++++++|++|   ++.++||| +++|+|+ +++|||.||++|+
T Consensus       235 gkg~t~~~ia~a~~~i~~ail~d---~~~v~~vs~~~~g~yg~~~v~~s~P~~ig~  287 (321)
T PTZ00082        235 GTGSAYFAPAAAAIEMAEAYLKD---KKRVLPCSAYLEGQYGHKDIYMGTPAVIGA  287 (321)
T ss_pred             CCCccHHHHHHHHHHHHHHHHcC---CCcEEEEEEEecccCCCCCeEEEEEEEEeC
Confidence            79999999999999999999997   67899999 7899995 6899999999985

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=4.2e-55  Score=405.52  Aligned_cols=257  Identities=32%  Similarity=0.554  Sum_probs=226.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC----CcEEEEecCCccccccCCCCEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR----SEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~----~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      |||+|||+ |.||+.+|+.++..++. +++|+|+.+  .+++++|+.|....    ..++   .++|+ +++++||+||+
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~-~~~~~aDiVIi   75 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNY-ADTANSDIVVI   75 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCH-HHhCCCCEEEE
Confidence            69999996 99999999999998887 799999965  36778888876432    1233   24576 45999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-ehhHHHH
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRA  181 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t-~Lds~R~  181 (300)
                      ++|.|+++|++|+|++..|.+++++++++|.+++|++++|++|||+|.|++++   ++.+| +|++||||+| .|||+|+
T Consensus        76 tag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~---~~~sg-~~~~rviG~g~~lds~R~  151 (305)
T TIGR01763        76 TAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA---WQKSG-FPKERVIGQAGVLDSARF  151 (305)
T ss_pred             cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHHC-cCHHHEEEeccchHHHHH
Confidence            99999999999999999999999999999999999999999999999766553   45555 9999999995 8999999


Q ss_pred             HHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-C----CCHHHHHHHHHHHhchhhhhhhhccCCCCCccchH
Q 022263          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (300)
Q Consensus       182 ~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-~----~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A  256 (300)
                      ++++|+++++++++|+++||||| |+++||+||++++++ .    ++++++++|.++++++|++|++++ |||+|+||+|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~GeH-g~s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a  229 (305)
T TIGR01763       152 RTFIAMELGVSVQDVTACVLGGH-GDAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPA  229 (305)
T ss_pred             HHHHHHHhCcCHHHeeeeEEecC-CCcEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHH
Confidence            99999999999999999999999 689999999998764 1    345558999999999999999986 7999999999


Q ss_pred             HHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          257 YAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       257 ~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      .++++++++|++|   ++.++|+| +++++|+ +++|||+||++|+
T Consensus       230 ~~~~~i~~ai~~~---~~~v~~~s~~~~~~yg~~~v~~s~P~~ig~  272 (305)
T TIGR01763       230 ASVVEMVEAILKD---RKRVLPCAAYLDGQYGIDGIYVGVPVILGK  272 (305)
T ss_pred             HHHHHHHHHHhCC---CCeEEEEEEEecccCCCCceEEEEEEEEeC
Confidence            9999999999997   57899999 6899994 7999999999985

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=5.9e-55  Score=406.96  Aligned_cols=262  Identities=27%  Similarity=0.306  Sum_probs=222.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecCC----cccHHHHhccccCCCcEEEEecCCccccccCCCCEE
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiV  100 (300)
                      ||+||||+|+||+++++.|..+++++     +|+|+|+++    ++++++||.|+..+...... .+++.+++++|||+|
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~-~~~~~~~~~~~aDiV   79 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVV-PTHDPAVAFTDVDVA   79 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCcee-ccCChHHHhCCCCEE
Confidence            69999977999999999999988885     799999943    57999999999743221112 233445899999999


Q ss_pred             EEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhH
Q 022263          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDV  178 (300)
Q Consensus       101 Ii~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds  178 (300)
                      |++||.|+++|++|.+++..|++|+++++++|++++ |++++|++|||+|+||+++   ++.++ ++|+++||+ |.|||
T Consensus        80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~~~sg-~~~~~vig~gt~LDs  155 (324)
T TIGR01758        80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL---SNYAP-SIPPKNFSALTRLDH  155 (324)
T ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH---HHHcC-CCCcceEEEeeehHH
Confidence            999999999999999999999999999999999996 9999999999999776653   45555 666679999 79999


Q ss_pred             HHHHHHHHHHcCCCCCceE-EEEEecCCCCceeeccCcCcCC-C----C----CCHH-H-HHHHHHHHhchhhhhhhhcc
Q 022263          179 VRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPK-A----N----LADE-D-IKALTKRTQDGGTEVVEAKA  246 (300)
Q Consensus       179 ~R~~~~la~~l~v~~~~V~-~~v~G~h~g~t~vp~~S~~~~~-~----~----~~~~-~-~~~i~~~v~~~g~~i~~~~~  246 (300)
                      +||+++||++++++|++|+ ++||||| |++|||+||+++++ +    .    ++++ + +++|.++++++|++|++.| 
T Consensus       156 ~R~r~~la~~l~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k-  233 (324)
T TIGR01758       156 NRALAQVAERAGVPVSDVKNVIIWGNH-SSTQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR-  233 (324)
T ss_pred             HHHHHHHHHHhCCChhhceEeEEEECC-CCCcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc-
Confidence            9999999999999999996 6999999 57999999999987 4    2    2222 2 5789999999999999963 


Q ss_pred             CCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCC-C--CCcCEEEEeEEecC
Q 022263          247 GKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQST-V--TELPFFASKRAWKN  300 (300)
Q Consensus       247 gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~-~--~~~~~~S~Pv~lg~  300 (300)
                       +|+|+||+|.++++++++|+.+. +++.++||| +++|+ |  ++++|||+||++|+
T Consensus       234 -~~~t~~~ia~~~~~i~~ai~~~~-~~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~  289 (324)
T TIGR01758       234 -KLSSALSAAKAAVDQMHDWVLGT-PEGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKN  289 (324)
T ss_pred             -CCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEeecCCcccCCCCceEEEEEEEEcC
Confidence             46899999999999999999443 367899999 67888 8  47999999999984

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=100.00  E-value=5.7e-55  Score=407.59  Aligned_cols=263  Identities=29%  Similarity=0.342  Sum_probs=225.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecCC----cccHHHHhccccCCC--cEEEEecCCccccccC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTRS--EVAGYMGNDQLGQALE   95 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~~~--~v~~~~~t~d~~~a~~   95 (300)
                      +|.||+||||+|+||+++++.|+.+++++     ||+|+|+++    ++++++|+.|+..+.  .+..   +.+++++++
T Consensus         1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~   77 (325)
T cd01336           1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK   77 (325)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence            46899999988999999999999988875     999999943    578889999986331  2322   346678999


Q ss_pred             CCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-
Q 022263           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-  173 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-  173 (300)
                      |||+||++||.+++++++|.+++..|++|++++++.|++++ |++++|++|||+|.|++++   ++.++++|+++ ||+ 
T Consensus        78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~---~k~~~~~~~~~-ig~g  153 (325)
T cd01336          78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALIL---LKYAPSIPKEN-FTAL  153 (325)
T ss_pred             CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH---HHHcCCCCHHH-EEee
Confidence            99999999999999999999999999999999999999997 7999999999999776653   44546688888 777 


Q ss_pred             eehhHHHHHHHHHHHcCCCCCceEE-EEEecCCCCceeeccCcCcCC----C-C----CCHH-H-HHHHHHHHhchhhhh
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPK----A-N----LADE-D-IKALTKRTQDGGTEV  241 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~~-~v~G~h~g~t~vp~~S~~~~~----~-~----~~~~-~-~~~i~~~v~~~g~~i  241 (300)
                      |.||++|+++++|+++++++++|+. +||||| |++|||+||+++++    + .    ++++ + +++|.++++++|++|
T Consensus       154 t~LDs~R~r~~la~~l~v~~~~v~~~~V~GeH-G~s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~I  232 (325)
T cd01336         154 TRLDHNRAKSQIALKLGVPVSDVKNVIIWGNH-SSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAV  232 (325)
T ss_pred             ehHHHHHHHHHHHHHhCcChhhceEeEEEEcC-CCCeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHH
Confidence            8999999999999999999999975 599999 56999999999886    3 1    2222 2 689999999999999


Q ss_pred             hhhccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263          242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWKN  300 (300)
Q Consensus       242 ~~~~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg~  300 (300)
                      ++++  ||+|+||+|.++++++++|++|.+ ++.++||| +++|+|  ++++|||+||+||+
T Consensus       233 i~~~--~g~t~~~~a~~~~~i~~ail~~~~-~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~  291 (325)
T cd01336         233 IKAR--KLSSAMSAAKAICDHVHDWWFGTP-EGEFVSMGVYSDGSYGVPEGLIFSFPVTCKN  291 (325)
T ss_pred             HHcc--ccchHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEecCCCcCCCCceEEEEEEEEeC
Confidence            9963  689999999999999999999742 46899999 579998  47999999999985

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05295 MDH_like Malate dehydrogenase-like

Probab=100.00  E-value=5.2e-55  Score=418.57  Aligned_cols=261  Identities=18%  Similarity=0.140  Sum_probs=226.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecC--C--cccHHHHhccccCCC--cEEEEecCCcccccc
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIA--N--TPGVAADVGHINTRS--EVAGYMGNDQLGQAL   94 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~--~--~~g~~~dl~~~~~~~--~v~~~~~t~d~~~a~   94 (300)
                      .+|.+|+|+||+|++|+++.+.++.+++++     .|+|+|+.  +  ++|++|||+|+.++.  .+...   ++.+++|
T Consensus       121 ~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~---~~~~ea~  197 (452)
T cd05295         121 INPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT---TDLDVAF  197 (452)
T ss_pred             CCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE---ECCHHHh
Confidence            457899999999999999999999987764     69999994  3  589999999997542  24443   2346899


Q ss_pred             CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC--CeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP--NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p--~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG  172 (300)
                      +|||+||+++|.|++|||+|.|++..|.+|+++++++|++++|  ++++|++|||+|+||+++   ++.++++|++||+|
T Consensus       198 ~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~---~k~apgiP~~rVig  274 (452)
T cd05295         198 KDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSIL---IKYAPSIPRKNIIA  274 (452)
T ss_pred             CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHH---HHHcCCCCHHHEEE
Confidence            9999999999999999999999999999999999999999999  999999999999888764   56674699999999


Q ss_pred             eeehhHHHHHHHHHHHcCCCCCce-EEEEEecCCCCceeeccCcCcCCC-------------C----C-CHHH-HHHHHH
Q 022263          173 VTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA-------------N----L-ADED-IKALTK  232 (300)
Q Consensus       173 ~t~Lds~R~~~~la~~l~v~~~~V-~~~v~G~h~g~t~vp~~S~~~~~~-------------~----~-~~~~-~~~i~~  232 (300)
                      ++.||++|++++||+++++++++| +++||||| |+||||+||++++++             .    + ++++ .+++.+
T Consensus       275 ~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeH-G~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~  353 (452)
T cd05295         275 VARLQENRAKALLARKLNVNSAGIKDVIVWGNI-GGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVA  353 (452)
T ss_pred             ecchHHHHHHHHHHHHhCcCHHHceeeEEEEcc-CCceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHH
Confidence            988999999999999999999999 67999999 579999999998753             1    1 2232 367889


Q ss_pred             HHhchhhhhhhhccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263          233 RTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWKN  300 (300)
Q Consensus       233 ~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg~  300 (300)
                      .++++++   +   +||+|+||+|.|+++++++|++|.+ ++.++||| +++|+|  |+++|||+||++|+
T Consensus       354 ~v~~rg~---~---rkgsT~~siA~A~~~iv~ail~~t~-~~~ilsvsv~sdG~YGip~gv~~S~Pviig~  417 (452)
T cd05295         354 TLKSLSS---S---LNHEAAISPAHAIATTLSYWYHGSP-PGEIFSLGVISEGWYGIPEGIVFSMPVKFQN  417 (452)
T ss_pred             HHHHHHH---h---ccCChHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeeccccCCcCCEEEEEEEEEeC
Confidence            9999998   2   5799999999999999999999864 35799999 679999  58999999999985

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=8e-54  Score=397.77  Aligned_cols=257  Identities=28%  Similarity=0.410  Sum_probs=227.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC-CcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |||+|||+ |.||+++++.|+..++..+++|+|+++  .+++++|+.|.... .....+  ++|+ +++++||+||++++
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d~-~~l~~aDiViita~   76 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGDY-ADCKGADVVVITAG   76 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCCH-HHhCCCCEEEEccC
Confidence            69999996 999999999999999888999999976  57899999998532 223333  3455 78999999999999


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHHH
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~~  184 (300)
                      .+++++++|.|++..|+++++++++.|++++|+++++++|||+|.|++++   ++.+| ||++||||+ |.|||+|++++
T Consensus        77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~---~~~sg-~p~~~viG~gt~LDs~R~~~~  152 (308)
T cd05292          77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVA---YKLSG-LPPNRVIGSGTVLDTARFRYL  152 (308)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHHC-cCHHHeecccchhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999766653   34454 999999999 79999999999


Q ss_pred             HHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC------------CCCHHHHHHHHHHHhchhhhhhhhccCCCCCc
Q 022263          185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (300)
Q Consensus       185 la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~------------~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~  252 (300)
                      +|+++++++++|+++||||| |+++||+||++++++            .++++++++|.++++++|++|++   +||+|+
T Consensus       153 la~~~~v~~~~v~~~viGeH-g~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~---~kg~t~  228 (308)
T cd05292         153 LGEHLGVDPRSVHAYIIGEH-GDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIE---RKGATY  228 (308)
T ss_pred             HHHHhCCCccceeceeeccC-CCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHH---cCCccH
Confidence            99999999999999999999 689999999998653            23345588999999999999998   468999


Q ss_pred             cchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          253 LSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       253 ~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      ||+|.++++++++|++|   ++.++||| +++|+|+ +++|||.||+||+
T Consensus       229 ~~~a~a~~~i~~ail~~---~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~  275 (308)
T cd05292         229 YAIGLALARIVEAILRD---ENSVLTVSSLLDGQYGIKDVALSLPCIVGR  275 (308)
T ss_pred             HHHHHHHHHHHHHHHcC---CCcEEEEEEEEcccCCCCCEEEEEEEEEeC
Confidence            99999999999999997   67899998 6899984 6899999999985

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=100.00  E-value=9.3e-52  Score=382.80  Aligned_cols=257  Identities=35%  Similarity=0.579  Sum_probs=224.1

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC--CcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      |+|||| |+||+.+++.++..++. +|+|+|+++  ++++++|+.|....  ...+.. .++|+ ++++|||+||+++|.
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~-~t~d~-~~l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVT-GTNDY-EDIAGSDVVVITAGI   76 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEE-EcCCH-HHhCCCCEEEEecCC
Confidence            689996 99999999999998888 999999976  46777888886422  122322 24565 679999999999999


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-ehhHHHHHHHH
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFY  185 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t-~Lds~R~~~~l  185 (300)
                      |+++|++|.+++.+|++++++++++|++++|++++|++|||+|.+++++   ++.+ ++||+||+|+| .||++|+++++
T Consensus        77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~---~~~s-~~~~~rviGlgt~lds~r~~~~l  152 (300)
T cd01339          77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVA---YKAS-GFPRNRVIGMAGVLDSARFRYFI  152 (300)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHh-CCCHHHEEEecchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999655543   3444 59999999996 89999999999


Q ss_pred             HHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-C----CCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHHH
Q 022263          186 AGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA  260 (300)
Q Consensus       186 a~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-~----~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~  260 (300)
                      |++|++++++|+++|+||| |++++|+||++++++ .    +++++++++.++++++|++|++.| |||+|+||+|.+++
T Consensus       153 a~~l~v~~~~v~~~v~G~h-g~~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~  230 (300)
T cd01339         153 AEELGVSVKDVQAMVLGGH-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIA  230 (300)
T ss_pred             HHHhCCCccceEEEEEeCC-CCcceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHH
Confidence            9999999999999999999 689999999998764 1    344558999999999999999986 78999999999999


Q ss_pred             HHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          261 IFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       261 ~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      +++++|++|   ++.++|+| +++|+|+ +++|||+||++|+
T Consensus       231 ~i~~ail~~---~~~i~~~s~~~~g~yg~~~~~~s~P~~ig~  269 (300)
T cd01339         231 EMVEAILKD---KKRVLPCSAYLEGEYGIKDIFVGVPVVLGK  269 (300)
T ss_pred             HHHHHHHcC---CCcEEEEEEEeccccCCCCeEEEEEEEEeC
Confidence            999999997   57899999 6899983 5899999999985

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PLN00135 malate dehydrogenase

Probab=100.00  E-value=7.5e-52  Score=382.89  Aligned_cols=234  Identities=24%  Similarity=0.290  Sum_probs=202.4

Q ss_pred             EEEEEecCC----cccHHHHhccccCC--CcEEEEecCCccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHH
Q 022263           56 RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLC  129 (300)
Q Consensus        56 el~L~D~~~----~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~  129 (300)
                      .|+|+|+++    ++|+++||.|+..+  ..+..   +++.+++++|||+||++||.|++||++|.|++..|++|+++++
T Consensus        15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~   91 (309)
T PLN00135         15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA   91 (309)
T ss_pred             EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence            799999955    58999999998733  12321   3454589999999999999999999999999999999999999


Q ss_pred             HHHHhh-CCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHHHHHHHcCCCCCce-EEEEEecCCC
Q 022263          130 SAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAG  206 (300)
Q Consensus       130 ~~i~~~-~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~~la~~l~v~~~~V-~~~v~G~h~g  206 (300)
                      ++|+++ +|++++|++|||+|+|||++   ++.++ +|++|+||+ |.|||+||+++||+++++++++| ++|||||| |
T Consensus        92 ~~i~~~~~p~aivivvsNPvDv~t~~~---~~~sg-~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeH-G  166 (309)
T PLN00135         92 SALEKHAAPDCKVLVVANPANTNALIL---KEFAP-SIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNH-S  166 (309)
T ss_pred             HHHHHhcCCCeEEEEeCCcHHHHHHHH---HHHcC-CCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcC-C
Confidence            999996 89999999999999776653   45555 999999999 79999999999999999999999 79999999 5


Q ss_pred             CceeeccCcCcC----CC-C----CCHHH--HHHHHHHHhchhhhhhhhccCCCCCccchHHHHHHHHHHHHccCCCCCC
Q 022263          207 ITILPLFSQATP----KA-N----LADED--IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPD  275 (300)
Q Consensus       207 ~t~vp~~S~~~~----~~-~----~~~~~--~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~  275 (300)
                      ++|||+||++++    ++ .    +.+++  .++|.++++++|++|++++  ||+|+||+|.|+++++++|++++ +++.
T Consensus       167 ~s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~--kg~t~~~ia~a~~~iv~ai~~~~-~~~~  243 (309)
T PLN00135        167 STQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIRDWVLGT-PEGT  243 (309)
T ss_pred             CceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHHHHhCC-cCCe
Confidence            699999999998    43 1    22332  6899999999999999963  78999999999999999999954 2578


Q ss_pred             ceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263          276 VVECS-FVQSTV--TELPFFASKRAWKN  300 (300)
Q Consensus       276 v~~~s-~v~~~~--~~~~~~S~Pv~lg~  300 (300)
                      ++|+| +++|+|  ++++|||+||++|+
T Consensus       244 v~~vsv~~~g~YGi~~~v~~s~P~vlg~  271 (309)
T PLN00135        244 WVSMGVYSDGSYGVPPGLIYSFPVTCEK  271 (309)
T ss_pred             EEEEEEEecCccCCcCCeEEEEEEEEEC
Confidence            99999 689999  48999999999985

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=100.00  E-value=3.8e-51  Score=379.79  Aligned_cols=259  Identities=27%  Similarity=0.440  Sum_probs=225.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC----cccHHHHhccccCC--CcEEEEecCCccccccCCCCEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~----~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      |||+|+||+|.+|++++..|+..++.++|+|+|+++    .++.++|++|....  ...+.. .++|+ +++++||+||+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~-~~~d~-~~l~~aDiVii   78 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIK-ISSDL-SDVAGSDIVII   78 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEE-ECCCH-HHhCCCCEEEE
Confidence            799999977999999999999999988999999943    47889999987432  122322 24454 67999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHH
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~  181 (300)
                      ++|.|+++|++|.|++..|+++++++++.|++++|++++|+++||+|.+|++   +++.++ +|++|+||+ |.|||+|+
T Consensus        79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~---~~~~~g-~~~~~viG~gt~LDs~R~  154 (309)
T cd05294          79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYK---ALKESG-FDKNRVFGLGTHLDSLRF  154 (309)
T ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHH---HHHhcC-CCHHHEeeccchHHHHHH
Confidence            9999999999999999999999999999999999999999999999976655   345666 999999999 68999999


Q ss_pred             HHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-C------CCHHHHHHHHHHHhchhhhhhhhccCCCCCccc
Q 022263          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N------LADEDIKALTKRTQDGGTEVVEAKAGKGSATLS  254 (300)
Q Consensus       182 ~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-~------~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~  254 (300)
                      +++||+++++++++|+++|+||| |++|||+||++++.+ .      .++.+++++.++++++|++|++.   ||+|+||
T Consensus       155 ~~~la~~l~v~~~~v~~~viGeH-g~s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~---kg~t~~~  230 (309)
T cd05294         155 KVAIAKHFNVHISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL---KGGSEYG  230 (309)
T ss_pred             HHHHHHHHCcChHHeEEEEEecC-CCceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHh---cCCchhh
Confidence            99999999999999999999999 689999999998764 1      22445789999999999999984   6789999


Q ss_pred             hHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-C-CcCEEEEeEEecC
Q 022263          255 MAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-T-ELPFFASKRAWKN  300 (300)
Q Consensus       255 ~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~-~~~~~S~Pv~lg~  300 (300)
                      +|.++++++++|++|   ++.++|++ +.+|+| . +++|||.||++|+
T Consensus       231 ~a~~~~~ii~ail~~---~~~v~~vsv~~~g~~~~~~~~~~svP~~ig~  276 (309)
T cd05294         231 PASAISNLVRTIAND---ERRILTVSTYLEGEIDGIRDVCIGVPVKLGK  276 (309)
T ss_pred             HHHHHHHHHHHHHCC---CCeEEEEEEEECCccCCCCCeEEEeEEEEcC
Confidence            999999999999987   56799988 578887 2 4899999999985

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK06223 malate dehydrogenase; Reviewed

Probab=100.00  E-value=3.4e-51  Score=379.99  Aligned_cols=260  Identities=35%  Similarity=0.589  Sum_probs=227.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCC--cEEEEecCCccccccCCCCEEEEc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~--~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      ||||+|||| |+||+++++.++..++. ||+|+|+++  .++.++|+.|.....  ..+.. .++|+ +++++||+||++
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~-~~~d~-~~~~~aDiVii~   77 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKIT-GTNDY-EDIAGSDVVVIT   77 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEE-eCCCH-HHHCCCCEEEEC
Confidence            689999996 99999999999998887 999999965  477888988875321  12222 24566 679999999999


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-ehhHHHHH
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAK  182 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t-~Lds~R~~  182 (300)
                      +|.|+++|++|.|++.+|++++++++++|++++|++++|++|||+|+||+++   ++.+ ++|++||+|+| .||++|++
T Consensus        78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~---~~~s-~~~~~~viG~gt~lds~r~~  153 (307)
T PRK06223         78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA---LKES-GFPKNRVIGMAGVLDSARFR  153 (307)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHh-CCCcccEEEeCCCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999766653   3444 59999999995 89999999


Q ss_pred             HHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-----CCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHH
Q 022263          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----NLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY  257 (300)
Q Consensus       183 ~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-----~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~  257 (300)
                      ++||+++++++++|+++|+||| |++++|+||++++.+     .++++++++|.+++++++++|++.. +||+++|++|.
T Consensus       154 ~~la~~l~v~~~~v~~~viGeh-g~s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~  231 (307)
T PRK06223        154 TFIAEELNVSVKDVTAFVLGGH-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA  231 (307)
T ss_pred             HHHHHHhCcChhhCcccEEcCC-CCcceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHH
Confidence            9999999999999999999999 579999999998753     1556678999999999999999974 68999999999


Q ss_pred             HHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          258 AGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       258 a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      ++++++++|+.|   ++.++|++ +++|+|+ +++|||+||++|+
T Consensus       232 ~~~~ii~ail~~---~~~~~~~~v~~~g~yg~~~~~~s~P~~i~~  273 (307)
T PRK06223        232 SIAEMVEAILKD---KKRVLPCSAYLEGEYGVKDVYVGVPVKLGK  273 (307)
T ss_pred             HHHHHHHHHHcC---CCcEEEEEEEecCcCCCCCeEEEeEEEEeC
Confidence            999999999986   57899988 6788884 7899999999985

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=100.00  E-value=9.5e-51  Score=376.39  Aligned_cols=234  Identities=23%  Similarity=0.253  Sum_probs=198.9

Q ss_pred             EEEEEecCC----cccHHHHhccccCC-CcEEEEecCCccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHH
Q 022263           56 RLALYDIAN----TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCS  130 (300)
Q Consensus        56 el~L~D~~~----~~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~  130 (300)
                      .|+|+|+++    ++|+++||.|+.++ ......  ++|++++++|||+||++||.|++||++|.|++..|++|++++++
T Consensus        17 ~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~--~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~   94 (313)
T TIGR01756        17 CLHLLEIPPALNRLEALAMELEDCAFPNLAGTIV--TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGE   94 (313)
T ss_pred             EEEEecCCCccchhHhHHHHHHHhccccCCceEe--cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence            799999965    58999999999732 122222  35666899999999999999999999999999999999999999


Q ss_pred             HHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHHHHHHHcCCCCCceEEE-EEecCCCC
Q 022263          131 AIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP-VVGGHAGI  207 (300)
Q Consensus       131 ~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~~la~~l~v~~~~V~~~-v~G~h~g~  207 (300)
                      +|++++| ++++|++|||+|+||+++   +++.+++|++ +||+ |.|||+||+++||++++++|++|+.+ ||||| |+
T Consensus        95 ~i~~~a~~~~ivivvtNPvDv~t~v~---~~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeH-G~  169 (313)
T TIGR01756        95 ALSEYAKPTVKVLVIGNPVNTNCLVA---MLHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNH-AE  169 (313)
T ss_pred             HHHhhCCCCeEEEEeCCchHHHHHHH---HHHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECC-CC
Confidence            9999996 588999999999776653   1355569999 9999 79999999999999999999999655 99999 57


Q ss_pred             ceeeccCcCcC--CC-C------CCHH-HHHHHHHHHhchhhhhhhhccCCCCCccchH-HHHHHHHHHHHccCCCCCCc
Q 022263          208 TILPLFSQATP--KA-N------LADE-DIKALTKRTQDGGTEVVEAKAGKGSATLSMA-YAGAIFADACLKGLNGVPDV  276 (300)
Q Consensus       208 t~vp~~S~~~~--~~-~------~~~~-~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A-~a~~~~i~ai~~~~~~~~~v  276 (300)
                      +|||+||++++  .+ .      ++++ .+++|.++++++|++|++   +||+|+|++| .|+++++++|++|.+ ++.+
T Consensus       170 s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~t~~~~~a~ai~~iv~ail~~~~-~~~i  245 (313)
T TIGR01756       170 SMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILE---MRGFTSAASPVKASLQHMKAWLFGTR-PGEV  245 (313)
T ss_pred             ceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHh---CcCCcchHHHHHHHHHHHHHHhcCCC-CCeE
Confidence            99999999988  53 1      2332 368999999999999998   5789999988 699999999999653 5689


Q ss_pred             eeeee-eeC--CCC--CcCEEEEeEEecC
Q 022263          277 VECSF-VQS--TVT--ELPFFASKRAWKN  300 (300)
Q Consensus       277 ~~~s~-v~~--~~~--~~~~~S~Pv~lg~  300 (300)
                      +|||. +++  +|+  +++|||+||++|+
T Consensus       246 ~pvsv~l~~~g~YGi~~~v~~s~P~vig~  274 (313)
T TIGR01756       246 LSMGIPVPEGNPYGIKPGVIFSFPCTVDE  274 (313)
T ss_pred             EEEEEEecCCCccCCCCCEEEEEEEEEeC
Confidence            99994 653  784  6999999999984

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=100.00  E-value=5.8e-46  Score=338.00  Aligned_cols=224  Identities=30%  Similarity=0.431  Sum_probs=197.4

Q ss_pred             EEEEcCCCChHHHHHHHHHhCC--CCCEEEEEecCC--cccHHHHhccccCCC-cEEEEecCCccccccCCCCEEEEcCC
Q 022263           31 VAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIAN--TPGVAADVGHINTRS-EVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~--~~~el~L~D~~~--~~g~~~dl~~~~~~~-~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |+||||+|.+|+++++.|++.+  ...||+|+|+++  .++.++|++|..... ..+.. .++|++++++|||+||+++|
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~-~~~d~~~~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS-ITDDPYEAFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE-ECCchHHHhCCCCEEEECCC
Confidence            6899966999999999999988  667999999965  578899999986442 23333 36687899999999999999


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHHHHH
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY  185 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~~~l  185 (300)
                      .++++|++|.+++.+|++++++++++|+++||++|+|++|||+|.+|+++   ++.+ ++|++|+||+|.||++|+++++
T Consensus        80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~---~~~s-g~~~~kviG~~~ld~~r~~~~l  155 (263)
T cd00650          80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLV---WRYS-GLPKEKVIGLGTLDPIRFRRIL  155 (263)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHh-CCCchhEEEeecchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999665543   3444 5999999999769999999999


Q ss_pred             HHHcCCCCCceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHHHHHHHH
Q 022263          186 AGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADA  265 (300)
Q Consensus       186 a~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i~a  265 (300)
                      |+++++++++|+++|||+|| ++++|+||+++                                     +|.++++++++
T Consensus       156 a~~l~v~~~~v~~~v~G~hg-~~~~~~~s~~~-------------------------------------~a~~~~~ii~a  197 (263)
T cd00650         156 AEKLGVDPDDVKVYILGEHG-GSQVPDWSTVR-------------------------------------IATSIADLIRS  197 (263)
T ss_pred             HHHhCCCccceEEEEEEcCC-CceEeccccch-------------------------------------HHHHHHHHHHH
Confidence            99999999999999999995 68999999864                                     78999999999


Q ss_pred             HHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263          266 CLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWKN  300 (300)
Q Consensus       266 i~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg~  300 (300)
                      |++|   ++.++|++ +.+|+|  ++++|||+||++|+
T Consensus       198 i~~~---~~~~~~v~v~~~g~ygi~~~~~~s~P~~i~~  232 (263)
T cd00650         198 LLND---EGEILPVGVRNNGQIGIPDDVVVSVPCIVGK  232 (263)
T ss_pred             HHcC---CCEEEEEEEEeCCccCCcCCEEEEEEEEEeC
Confidence            9997   56789988 578888  48999999999985

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2.7e-46  Score=324.71  Aligned_cols=265  Identities=29%  Similarity=0.349  Sum_probs=234.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecCC----cccHHHHhccccCCCcEEEEecCCccccccCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~a   97 (300)
                      ++.+|.|.||+|++|+++.+.++....++     .++|+|+.+    .+|..|+|+|+.+| .++....++|..++|+|.
T Consensus         3 epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~P-lL~~Vvattd~~~afkdv   81 (332)
T KOG1496|consen    3 EPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALP-LLKGVVATTDEVEAFKDV   81 (332)
T ss_pred             CceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhh-HHHhhhcccChhhhhccC
Confidence            57899999999999999999999765442     799999976    48899999999887 344434467888999999


Q ss_pred             CEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeh
Q 022263           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL  176 (300)
Q Consensus        98 DiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~L  176 (300)
                      |+.|+..+.||++||+|.|++..|.+|+++.+..+++|+ |++.++++.||+|+++.++.   ++++++|.+++-++|.|
T Consensus        82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTRL  158 (332)
T KOG1496|consen   82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTRL  158 (332)
T ss_pred             cEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhhh
Confidence            999999999999999999999999999999999999997 79999999999999998864   56778999999999999


Q ss_pred             hHHHHHHHHHHHcCCCCCce-EEEEEecCCCCceeeccCcCcCCC---------C-CCHHHH-HHHHHHHhchhhhhhhh
Q 022263          177 DVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA---------N-LADEDI-KALTKRTQDGGTEVVEA  244 (300)
Q Consensus       177 ds~R~~~~la~~l~v~~~~V-~~~v~G~h~g~t~vp~~S~~~~~~---------~-~~~~~~-~~i~~~v~~~g~~i~~~  244 (300)
                      |++|+..++|.++|++.++| ++++||+|+ .||+|+..++++..         . -++.|+ .++++.|++||..+++.
T Consensus       159 DhNRA~~QlA~klgv~~~~VkNviIWGNHS-sTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~a  237 (332)
T KOG1496|consen  159 DHNRALAQLALKLGVPVSDVKNVIIWGNHS-STQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKA  237 (332)
T ss_pred             chhhHHHHHHHhhCCchhhcceeEEecccc-cccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhh
Confidence            99999999999999999999 799999996 59999999998752         1 234554 59999999999999997


Q ss_pred             ccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEec
Q 022263          245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWK  299 (300)
Q Consensus       245 ~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg  299 (300)
                      +  |-|+.+|.|.|++++++.|+.+.+ +.++++++ |.+|+|  |++..||+||++.
T Consensus       238 r--k~SSA~SaA~aacDhi~dw~~gTp-eG~fvSmgV~sDGsYgip~gli~SfPv~~k  292 (332)
T KOG1496|consen  238 R--KLSSAMSAAKAACDHIRDWWFGTP-EGTFVSMGVYSDGSYGIPDGLIFSFPVTIK  292 (332)
T ss_pred             h--hhhhhhhHHHhHhhhhhheecCCC-CccEEEEeeecCCCCCCCCCeEEEcceEec
Confidence            5  678999999999999999999987 56899999 579999  7899999999874

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=1.4e-33  Score=233.74  Aligned_cols=139  Identities=42%  Similarity=0.643  Sum_probs=120.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      |||+||||+|+||+++++.|+++++.+||+|+|+++  ++|+++||+|+..+......... +.+++++|||+||+++|.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~~~~~~~~aDivvitag~   79 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS-GDYEALKDADIVVITAGV   79 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE-SSGGGGTTESEEEETTST
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc-ccccccccccEEEEeccc
Confidence            799999977999999999999999999999999974  68999999999765433332222 335899999999999999


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG  172 (300)
                      +++||++|.|++..|++++++++++|++++|+++++++|||+|.|+    +++++.+++||+|+||
T Consensus        80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t----~~~~~~s~~~~~kviG  141 (141)
T PF00056_consen   80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMT----YVAQKYSGFPPNKVIG  141 (141)
T ss_dssp             SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHH----HHHHHHHTSSGGGEEE
T ss_pred             cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHH----HHHHHhhCcCcccCcC
Confidence            9999999999999999999999999999999999999999999544    4444445599999998

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=99.95  E-value=4.3e-28  Score=207.67  Aligned_cols=121  Identities=32%  Similarity=0.479  Sum_probs=108.4

Q ss_pred             eehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-----------CCCHHHHHHHHHHHhchhhhhh
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----------NLADEDIKALTKRTQDGGTEVV  242 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-----------~~~~~~~~~i~~~v~~~g~~i~  242 (300)
                      |.||++||++++|++++++|+++++|||||| |+++||+||++++..           .++++++++|.++++++|++|+
T Consensus         1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeH-g~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii   79 (174)
T PF02866_consen    1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEH-GDSQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII   79 (174)
T ss_dssp             THHHHHHHHHHHHHHHTSGGGGEEEEEEBSS-STTEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCccceEEEEEecC-CcceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence            6799999999999999999999999999999 579999999998752           3667778999999999999999


Q ss_pred             hhccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC--Cc-CEEEEeEEecC
Q 022263          243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT--EL-PFFASKRAWKN  300 (300)
Q Consensus       243 ~~~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~--~~-~~~S~Pv~lg~  300 (300)
                      +.| + |+|+||+|.|+++++++|++|.   +.++|+| +++|+|+  ++ +|||+||+||+
T Consensus        80 ~~k-~-g~t~~s~A~a~~~~v~ail~~~---~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~  136 (174)
T PF02866_consen   80 KAK-G-GSTSYSIAAAAARIVEAILKDE---RRILPVSVYLDGEYGIPDGCVYFSVPVVIGK  136 (174)
T ss_dssp             HHH-S-SSCHHHHHHHHHHHHHHHHTTH---TEEEEEEEEEESGGGEESSSEEEEEEEEEET
T ss_pred             eec-c-ccCcCCHHHHHHHHHHHHhhcc---cccccceeccccccCcccccceecceEEEcC
Confidence            975 2 8999999999999999999984   6799998 5788883  34 99999999995

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>PRK15076 alpha-galactosidase; Provisional

Probab=99.92  E-value=5.9e-25  Score=212.45  Aligned_cols=164  Identities=21%  Similarity=0.265  Sum_probs=129.2

Q ss_pred             CceEEEEcCCCChHHHHHH--HHH-hCCCCC-EEEEEecCCc--c-cHHHHhcccc--CCCcEEEEecCCccccccCCCC
Q 022263           28 DRKVAVLGAAGGIGQPLAL--LMK-LNPLVS-RLALYDIANT--P-GVAADVGHIN--TRSEVAGYMGNDQLGQALEDSD   98 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~--~L~-~~~~~~-el~L~D~~~~--~-g~~~dl~~~~--~~~~v~~~~~t~d~~~a~~~aD   98 (300)
                      |+||+|||| |++|.+.++  .++ ..++.+ ||+|+|+++.  + +..+ +++..  .....+.. .|+|++++++|||
T Consensus         1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~-~ttD~~eal~dAD   77 (431)
T PRK15076          1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKIT-ATTDRREALQGAD   77 (431)
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEE-EECCHHHHhCCCC
Confidence            579999996 999988877  565 345554 9999999763  2 3333 33332  11123332 3578789999999


Q ss_pred             EEEEcCCCC-CCCC--------------Ccchhh--------hhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHH
Q 022263           99 VVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA  155 (300)
Q Consensus        99 iVIi~ag~~-~~~g--------------~~r~dl--------~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~  155 (300)
                      +||++++++ ++++              ++|.|.        +.+|++++++++++|+++||+||+|++|||+|    ++
T Consensus        78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~d----iv  153 (431)
T PRK15076         78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMA----MN  153 (431)
T ss_pred             EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHH----HH
Confidence            999999987 4555              567788        89999999999999999999999999999999    55


Q ss_pred             HHHHHHhCCCCCCcEEEee--ehhHHHHHHHHHHHcCCCCCceEEEEEe-cC
Q 022263          156 AEVFKKAGTYNEKKLFGVT--TLDVVRAKTFYAGKANVNVAEVNVPVVG-GH  204 (300)
Q Consensus       156 ~~~~~~~~~~~~~kviG~t--~Lds~R~~~~la~~l~v~~~~V~~~v~G-~h  204 (300)
                      |+++.   ++|+.||||+|  .+|+.   +.+|+.+|+++++|++++.| +|
T Consensus       154 t~~~~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH  199 (431)
T PRK15076        154 TWAMN---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINH  199 (431)
T ss_pred             HHHHh---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecc
Confidence            55555   38899999997  57765   78999999999999999999 55

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=99.91  E-value=4.4e-24  Score=205.85  Aligned_cols=175  Identities=21%  Similarity=0.210  Sum_probs=128.9

Q ss_pred             ceEEEEcCCCChHHH--HHHHHHhCC--C-CCEEEEEecCCcc-----cHHHHhccccCCCcEEEEecCCccccccCCCC
Q 022263           29 RKVAVLGAAGGIGQP--LALLMKLNP--L-VSRLALYDIANTP-----GVAADVGHINTRSEVAGYMGNDQLGQALEDSD   98 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~--~a~~L~~~~--~-~~el~L~D~~~~~-----g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aD   98 (300)
                      |||+|||| |+. .+  +...|+...  + .+||+|+|+++.+     ..+..+.+.... .++.. .|+|+++|++|||
T Consensus         1 ~KI~iIGg-GS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~-~~~v~-~ttD~~~Al~gAD   76 (425)
T cd05197           1 VKIAIIGG-GSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGA-DIKFE-KTMDLEDAIIDAD   76 (425)
T ss_pred             CEEEEECC-chH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCC-CeEEE-EeCCHHHHhCCCC
Confidence            69999997 654 22  223444333  3 3799999998631     112223222221 34433 3689999999999


Q ss_pred             EEEEcCCCC------------CCCCCc--------chhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHH
Q 022263           99 VVIIPAGVP------------RKPGMT--------RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (300)
Q Consensus        99 iVIi~ag~~------------~~~g~~--------r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~  158 (300)
                      +||.+..+.            .+.|.-        -.-...+|+++++++++.|+++||+||+|++|||+|.    +|++
T Consensus        77 fVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di----~t~a  152 (425)
T cd05197          77 FVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGE----VTEA  152 (425)
T ss_pred             EEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHH----HHHH
Confidence            999986432            233211        1224568999999999999999999999999999994    5555


Q ss_pred             HHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEEe-cCCCCceeeccCcCcCC
Q 022263          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAGITILPLFSQATPK  219 (300)
Q Consensus       159 ~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G-~h~g~t~vp~~S~~~~~  219 (300)
                      .++.  +|+.|+||+|.. +.|+++++|+.+|+++++|+++++| ||+     |+||++++.
T Consensus       153 ~~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg-----~~~s~~~~~  206 (425)
T cd05197         153 VRRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHG-----IWLNRVRYN  206 (425)
T ss_pred             HHHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCe-----EeeEeEEEC
Confidence            5443  478999999977 9999999999999999999999999 994     899998764

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=99.90  E-value=1.6e-23  Score=201.58  Aligned_cols=166  Identities=19%  Similarity=0.225  Sum_probs=126.2

Q ss_pred             ceEEEEcCCCChHH-HHHHHHHhC-C-C-CCEEEEEecC-Ccc-----cHHHHhccccCCCcEEEEecCCccccccCCCC
Q 022263           29 RKVAVLGAAGGIGQ-PLALLMKLN-P-L-VSRLALYDIA-NTP-----GVAADVGHINTRSEVAGYMGNDQLGQALEDSD   98 (300)
Q Consensus        29 ~KI~IIGaaG~VG~-~~a~~L~~~-~-~-~~el~L~D~~-~~~-----g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aD   98 (300)
                      |||+|||| |+... .+...|++. . + .+||+|+|++ +.+     ..+..+.+... ..++.. .|+|+++|++|||
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~-~~~~v~-~t~d~~~al~gad   77 (419)
T cd05296           1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAG-LPIKVH-LTTDRREALEGAD   77 (419)
T ss_pred             CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhC-CCeEEE-EeCCHHHHhCCCC
Confidence            69999997 76522 122344442 2 3 3799999998 431     11122222222 134433 3679999999999


Q ss_pred             EEEEcCCCCCCCCCcchhh--------------------hhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHH
Q 022263           99 VVIIPAGVPRKPGMTRDDL--------------------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (300)
Q Consensus        99 iVIi~ag~~~~~g~~r~dl--------------------~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~  158 (300)
                      +||+++++++.+++++++.                    ..+|++++++++++|+++||+||+|++|||+|    ++|++
T Consensus        78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~----ivt~a  153 (419)
T cd05296          78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG----IVTEA  153 (419)
T ss_pred             EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH----HHHHH
Confidence            9999999887777666553                    56899999999999999999999999999999    56666


Q ss_pred             HHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEEe-cCC
Q 022263          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHA  205 (300)
Q Consensus       159 ~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G-~h~  205 (300)
                      .++.+   +.|+||+|.. +.|+++++|+.+|+++++|+++++| ||-
T Consensus       154 ~~k~~---~~rviGlc~~-~~r~~~~ia~~lg~~~~~v~~~v~GlNH~  197 (419)
T cd05296         154 VLRHT---GDRVIGLCNV-PIGLQRRIAELLGVDPEDVFIDYAGLNHL  197 (419)
T ss_pred             HHHhc---cCCEEeeCCc-HHHHHHHHHHHhCCCHHHceEEEEecccc
Confidence            66543   7899999987 4899999999999999999999999 873

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=99.90  E-value=5.8e-22  Score=191.53  Aligned_cols=163  Identities=20%  Similarity=0.254  Sum_probs=117.1

Q ss_pred             ceEEEEcCCCChHHH--HHHHHHhC--CC-CCEEEEEecCCcc-----cHHHHhccccCCCcEEEEecCCccccccCCCC
Q 022263           29 RKVAVLGAAGGIGQP--LALLMKLN--PL-VSRLALYDIANTP-----GVAADVGHINTRSEVAGYMGNDQLGQALEDSD   98 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~--~a~~L~~~--~~-~~el~L~D~~~~~-----g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aD   98 (300)
                      |||+|||| |+. .+  +...|++.  .+ .+||+|+|+++.+     ..+..+.+... ..++.. .|+|+++|++|||
T Consensus         1 ~KI~iIGa-GS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g-~~~~v~-~Ttdr~eAl~gAD   76 (437)
T cd05298           1 FKIVIAGG-GST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENY-PEIKFV-YTTDPEEAFTDAD   76 (437)
T ss_pred             CeEEEECC-cHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhC-CCeEEE-EECCHHHHhCCCC
Confidence            79999997 654 22  22344444  23 3799999998631     12222222211 234443 3689999999999


Q ss_pred             EEEEcCCCC------------CCCCC---c-----chhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHH
Q 022263           99 VVIIPAGVP------------RKPGM---T-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (300)
Q Consensus        99 iVIi~ag~~------------~~~g~---~-----r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~  158 (300)
                      +||.+..+.            .+.|.   +     -.-...+|++++.++++.|+++||+||+|++|||+|    ++|++
T Consensus        77 fVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~----~vt~~  152 (437)
T cd05298          77 FVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAA----IVAEA  152 (437)
T ss_pred             EEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHH
Confidence            999986532            23332   1     122456899999999999999999999999999999    45555


Q ss_pred             HHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEEe
Q 022263          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (300)
Q Consensus       159 ~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G  202 (300)
                      .++.  +|+.|++|+|+--. .++..+|+.+|+++++++..+.|
T Consensus       153 ~~~~--~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~~G  193 (437)
T cd05298         153 LRRL--FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDYFG  193 (437)
T ss_pred             HHHH--CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEEEe
Confidence            5543  77899999997544 46888999999999999999998

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.86  E-value=3.9e-21  Score=185.89  Aligned_cols=166  Identities=22%  Similarity=0.179  Sum_probs=127.3

Q ss_pred             ceEEEEcCCCChHHHHHH--HHHhC-CCC-CEEEEEecCCc--ccHHHHhcccc--CCCcEEEEecCCccccccCCCCEE
Q 022263           29 RKVAVLGAAGGIGQPLAL--LMKLN-PLV-SRLALYDIANT--PGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVV  100 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~--~L~~~-~~~-~el~L~D~~~~--~g~~~dl~~~~--~~~~v~~~~~t~d~~~a~~~aDiV  100 (300)
                      +||+|||| |.+|++.+.  .++.. .+. .+|+|+|+++.  +....++.+..  .....+.. .|+|++++++|||+|
T Consensus         1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~-~ttD~~eal~~AD~V   78 (423)
T cd05297           1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIE-ATTDRREALDGADFV   78 (423)
T ss_pred             CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEE-EeCCHHHHhcCCCEE
Confidence            58999996 999999876  45433 343 39999999763  33444444332  11122322 357888999999999


Q ss_pred             EEcCCCCCCCCCcc----------------------hhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHH
Q 022263          101 IIPAGVPRKPGMTR----------------------DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (300)
Q Consensus       101 Ii~ag~~~~~g~~r----------------------~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~  158 (300)
                      |++++.+..++.++                      .....+|++++.++++.++++||++|++++|||++    ++|++
T Consensus        79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~----i~t~~  154 (423)
T cd05297          79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMA----ELTWA  154 (423)
T ss_pred             EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHH----HHHHH
Confidence            99998766666554                      33557899999999999999999999999999999    55555


Q ss_pred             HHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEEe-cC
Q 022263          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GH  204 (300)
Q Consensus       159 ~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G-~h  204 (300)
                      ..+..   ..|++|+|.- +.|+++.+|+.+++++++|+++++| +|
T Consensus       155 ~~k~~---~~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH  197 (423)
T cd05297         155 LNRYT---PIKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINH  197 (423)
T ss_pred             HHHhC---CCCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeecc
Confidence            55543   2799999865 7889999999999999999999999 44

linked to 3D####ucture

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=99.78  E-value=2.8e-18  Score=147.11  Aligned_cols=152  Identities=22%  Similarity=0.264  Sum_probs=101.0

Q ss_pred             eEEEEcCCCChHHHHHH--HHHhCCCC--CEEEEEecCCcc-----cHHHHhccccCCCcEEEEecCCccccccCCCCEE
Q 022263           30 KVAVLGAAGGIGQPLAL--LMKLNPLV--SRLALYDIANTP-----GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~--~L~~~~~~--~el~L~D~~~~~-----g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiV  100 (300)
                      ||+|||| |++-.+...  .+...+-.  +||+|+|+++.+     ..+..+.+... ..++.. .|+|+++|++|||+|
T Consensus         1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~-~~~~v~-~ttd~~eAl~gADfV   77 (183)
T PF02056_consen    1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAG-ADLKVE-ATTDRREALEGADFV   77 (183)
T ss_dssp             EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCT-TSSEEE-EESSHHHHHTTESEE
T ss_pred             CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcC-CCeEEE-EeCCHHHHhCCCCEE
Confidence            8999997 887765432  33443332  599999998631     12222222221 133332 267999999999999


Q ss_pred             EEcCCC------------CCCCCCcc----------hhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHH
Q 022263          101 IIPAGV------------PRKPGMTR----------DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (300)
Q Consensus       101 Ii~ag~------------~~~~g~~r----------~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~  158 (300)
                      |.+..+            |.+.|..-          .-...++++.+.++++.|+++|||||++++|||+.    +++++
T Consensus        78 i~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~----~vt~a  153 (183)
T PF02056_consen   78 INQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMG----IVTEA  153 (183)
T ss_dssp             EE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHH----HHHHH
T ss_pred             EEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHH----HHHHH
Confidence            998653            44554321          22456899999999999999999999999999999    56666


Q ss_pred             HHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCC
Q 022263          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANV  191 (300)
Q Consensus       159 ~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v  191 (300)
                      ..+.  +|..|++|+|+-- .-+...+|+.||+
T Consensus       154 ~~r~--~~~~k~vGlCh~~-~~~~~~la~~L~~  183 (183)
T PF02056_consen  154 LSRY--TPKIKVVGLCHGP-QGTRRQLAKLLGM  183 (183)
T ss_dssp             HHHH--STTSEEEEE-SHH-HHHHHHHHHHHT-
T ss_pred             HHHh--CCCCCEEEECCCH-HHHHHHHHHHhCc
Confidence            6553  5568999999764 3467889998874

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=99.76  E-value=9.5e-18  Score=159.77  Aligned_cols=166  Identities=24%  Similarity=0.321  Sum_probs=117.8

Q ss_pred             CCceEEEEcCCCChHHHHHH--HHHhCC-C-CCEEEEEecCCccc-HH----HHhccccCCCcEEEEecCCccccccCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLAL--LMKLNP-L-VSRLALYDIANTPG-VA----ADVGHINTRSEVAGYMGNDQLGQALEDS   97 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~--~L~~~~-~-~~el~L~D~~~~~g-~~----~dl~~~~~~~~v~~~~~t~d~~~a~~~a   97 (300)
                      +++||+|||| |+.+..-..  .|.+.+ + ..||.|+|+++.+- ..    ..+-+.... .++... |+|+++|++||
T Consensus         2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~-~~kv~~-ttd~~eAl~gA   78 (442)
T COG1486           2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGA-PVKVEA-TTDRREALEGA   78 (442)
T ss_pred             CcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCC-CeEEEE-ecCHHHHhcCC
Confidence            4579999997 877755432  233322 2 35999999976321 11    222222222 244432 67999999999


Q ss_pred             CEEEEcCCC------------CCCCCCcchh--------hhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHH
Q 022263           98 DVVIIPAGV------------PRKPGMTRDD--------LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE  157 (300)
Q Consensus        98 DiVIi~ag~------------~~~~g~~r~d--------l~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~  157 (300)
                      |+|+.++.+            |.|.|.-+.|        ...++++++-+|++.|+++||+||++++|||+.    ++|+
T Consensus        79 dfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~----~vTe  154 (442)
T COG1486          79 DFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAA----IVTE  154 (442)
T ss_pred             CEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHH----HHHH
Confidence            999998643            3444422211        345899999999999999999999999999999    6777


Q ss_pred             HHHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCC-CceEEEEEe
Q 022263          158 VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV-AEVNVPVVG  202 (300)
Q Consensus       158 ~~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~-~~V~~~v~G  202 (300)
                      +.++.  +|..|++|+|+.- .-....+|+.|++++ ++++.-+.|
T Consensus       155 Av~r~--~~~~K~VGlCh~~-~g~~~~lAe~L~~~~~~~l~~~~aG  197 (442)
T COG1486         155 AVRRL--YPKIKIVGLCHGP-IGIAMELAEVLGLEPREDLRYRVAG  197 (442)
T ss_pred             HHHHh--CCCCcEEeeCCch-HHHHHHHHHHhCCCchhceeEEEee
Confidence            76663  5545999999753 346788999999975 999999998

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.88  E-value=6.8e-09  Score=89.39  Aligned_cols=118  Identities=23%  Similarity=0.370  Sum_probs=79.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---c--cHHHH-hc---c-ccC--------CCcEEEEecCCccc
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---P--GVAAD-VG---H-INT--------RSEVAGYMGNDQLG   91 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~--g~~~d-l~---~-~~~--------~~~v~~~~~t~d~~   91 (300)
                      ||+|||| |.+|..+|..++..|+  +++|+|.++.   .  ....+ +.   + ...        ..+++.   ++|++
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~dl~   74 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF---TTDLE   74 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE---ESSGG
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc---ccCHH
Confidence            7999996 9999999999999998  9999999752   1  11111 11   0 000        124553   46786


Q ss_pred             cccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcE
Q 022263           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (300)
Q Consensus        92 ~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kv  170 (300)
                      ++. +||+||.+.              .++.++.+++..++.+.+ |++++  +||....   -++++....+  .|+|+
T Consensus        75 ~~~-~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTSsl---~i~~la~~~~--~p~R~  132 (180)
T PF02737_consen   75 EAV-DADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTSSL---SISELAAALS--RPERF  132 (180)
T ss_dssp             GGC-TESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--SSS----HHHHHTTSS--TGGGE
T ss_pred             HHh-hhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCCCC---CHHHHHhccC--cCceE
Confidence            555 999999984              468899999999999998 47775  7887764   3455554432  47889


Q ss_pred             EEeee
Q 022263          171 FGVTT  175 (300)
Q Consensus       171 iG~t~  175 (300)
                      +|+..
T Consensus       133 ig~Hf  137 (180)
T PF02737_consen  133 IGMHF  137 (180)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99864

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.87  E-value=2.2e-08  Score=94.55  Aligned_cols=114  Identities=20%  Similarity=0.269  Sum_probs=83.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHH-------------HHhcccc-CCCcEEEEecCCcccccc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-------------ADVGHIN-TRSEVAGYMGNDQLGQAL   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~-------------~dl~~~~-~~~~v~~~~~t~d~~~a~   94 (300)
                      |||+|+| +|+||...+..|++.|+  +++.+|+++.+-..             .+|.... ...+++.   |+|+++++
T Consensus         1 MkI~viG-tGYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f---Ttd~~~a~   74 (414)
T COG1004           1 MKITVIG-TGYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF---TTDYEEAV   74 (414)
T ss_pred             CceEEEC-CchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE---EcCHHHHH
Confidence            8999999 59999999999999988  99999997532111             1222111 1123554   67999999


Q ss_pred             CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe--cCCCcccHHH
Q 022263           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPI  154 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~--tNP~d~~~~i  154 (300)
                      +++|++||+.|.|.++..      ..+...+...++.|.++.+...+|++  |-|+.+.-.+
T Consensus        75 ~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v  130 (414)
T COG1004          75 KDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEV  130 (414)
T ss_pred             hcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHH
Confidence            999999999999977632      34678889999999998876344444  6788865444

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=98.82  E-value=1.2e-08  Score=94.34  Aligned_cols=141  Identities=23%  Similarity=0.312  Sum_probs=96.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccH--HHH----hcccc--C----CCcEEEEecCCcccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV--AAD----VGHIN--T----RSEVAGYMGNDQLGQ   92 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~--~~d----l~~~~--~----~~~v~~~~~t~d~~~   92 (300)
                      .+||+|||| |.||..+|..++..|+  +|+|+|+++.   ++.  ...    +....  .    ...+..+..++++ .
T Consensus         3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~-~   78 (307)
T COG1250           3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDL-A   78 (307)
T ss_pred             ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCch-h
Confidence            469999996 9999999999999778  9999999742   111  111    11110  0    0111222224565 4


Q ss_pred             ccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEE
Q 022263           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF  171 (300)
Q Consensus        93 a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kvi  171 (300)
                      ++++||+||.++              .+|.++.+++..++.+++ |++++  .||.+..   -++++....  ..|+|++
T Consensus        79 ~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl---~it~ia~~~--~rper~i  137 (307)
T COG1250          79 ALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAIL--ASNTSSL---SITELAEAL--KRPERFI  137 (307)
T ss_pred             HhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcEE--eeccCCC---CHHHHHHHh--CCchhEE
Confidence            899999999984              679999999999999998 58876  9999876   345555443  4578999


Q ss_pred             Eee-------------------ehhHHHHHHHHHHHcCCCC
Q 022263          172 GVT-------------------TLDVVRAKTFYAGKANVNV  193 (300)
Q Consensus       172 G~t-------------------~Lds~R~~~~la~~l~v~~  193 (300)
                      |+.                   .-++...-..++++++-.|
T Consensus       138 G~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~  178 (307)
T COG1250         138 GLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTP  178 (307)
T ss_pred             EEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCC
Confidence            983                   1244555567778877443

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.72  E-value=9.9e-08  Score=89.31  Aligned_cols=119  Identities=14%  Similarity=0.169  Sum_probs=83.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cH-------HHH-hcccc-----CCCcEEEEecCCccccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GV-------AAD-VGHIN-----TRSEVAGYMGNDQLGQA   93 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~-------~~d-l~~~~-----~~~~v~~~~~t~d~~~a   93 (300)
                      ..||+|||+ |.||+.+|..++..|+  +++++|+++.. ..       .++ +....     ...+++.   +++++++
T Consensus         7 i~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~---~~~l~~a   80 (321)
T PRK07066          7 IKTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF---VATIEAC   80 (321)
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee---cCCHHHH
Confidence            358999995 9999999999999998  99999996521 00       011 11010     0123332   3577788


Q ss_pred             cCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG  172 (300)
                      +++||+|+.++              .+|.++.+++...+.+++| ++  |+.||.+..   .++++....  -.|+|++|
T Consensus        81 v~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l---~~s~la~~~--~~p~R~~g  139 (321)
T PRK07066         81 VADADFIQESA--------------PEREALKLELHERISRAAKPDA--IIASSTSGL---LPTDFYARA--THPERCVV  139 (321)
T ss_pred             hcCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe--EEEECCCcc---CHHHHHHhc--CCcccEEE
Confidence            99999999984              4678889999999999986 55  458898864   234444433  24678888


Q ss_pred             e
Q 022263          173 V  173 (300)
Q Consensus       173 ~  173 (300)
                      +
T Consensus       140 ~  140 (321)
T PRK07066        140 G  140 (321)
T ss_pred             E
Confidence            6

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.63  E-value=2.7e-07  Score=85.11  Aligned_cols=120  Identities=14%  Similarity=0.237  Sum_probs=81.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cH-----HHH-hcccc-C--------CCcEEEEecCCc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GV-----AAD-VGHIN-T--------RSEVAGYMGNDQ   89 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~-----~~d-l~~~~-~--------~~~v~~~~~t~d   89 (300)
                      +.||+|||+ |.+|..+|..++..|+  +++|+|+++..   +.     .+| +.+.. .        ..+++.   ++|
T Consensus         5 ~~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~---~~~   78 (286)
T PRK07819          5 IQRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF---TTD   78 (286)
T ss_pred             ccEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe---eCC
Confidence            348999996 9999999999999998  99999997521   10     011 11110 0        112332   457


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-C-CeEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022263           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-P-NAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (300)
Q Consensus        90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~  167 (300)
                      + +++++||+||.++              .++.++.+++...+.+++ + ++++  +||....-   ++.+....  -.+
T Consensus        79 ~-~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~~~---~~~la~~~--~~~  136 (286)
T PRK07819         79 L-GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSSIP---IMKLAAAT--KRP  136 (286)
T ss_pred             H-HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHhhc--CCC
Confidence            7 6799999999984              567888999999999997 4 6655  77776642   22233322  346


Q ss_pred             CcEEEeee
Q 022263          168 KKLFGVTT  175 (300)
Q Consensus       168 ~kviG~t~  175 (300)
                      +|++|+..
T Consensus       137 ~r~~g~hf  144 (286)
T PRK07819        137 GRVLGLHF  144 (286)
T ss_pred             ccEEEEec
Confidence            78888743

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.63  E-value=9.8e-08  Score=82.57  Aligned_cols=123  Identities=21%  Similarity=0.277  Sum_probs=71.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-------------HHHhcccc-CCCcEEEEecCCcccccc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-------------AADVGHIN-TRSEVAGYMGNDQLGQAL   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-------------~~dl~~~~-~~~~v~~~~~t~d~~~a~   94 (300)
                      |||+|||. |+||..+|..|+..|+  +++-+|+++.+-.             ..++.... ...+++.   ++|.++++
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~---t~~~~~ai   74 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA---TTDIEEAI   74 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE---ESEHHHHH
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh---hhhhhhhh
Confidence            89999995 9999999999999998  9999999753111             01111111 1224554   46777889


Q ss_pred             CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEe-cCCCcccHHHHHHHHHHhC
Q 022263           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMI-SNPVNSTVPIAAEVFKKAG  163 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~-tNP~d~~~~i~~~~~~~~~  163 (300)
                      ++||++|++.+.|..++.      .-+...+.+.++.|.++.. +.++++= |=|..+.--++..++++.+
T Consensus        75 ~~adv~~I~VpTP~~~~~------~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~  139 (185)
T PF03721_consen   75 KDADVVFICVPTPSDEDG------SPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS  139 (185)
T ss_dssp             HH-SEEEE----EBETTT------SBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred             hccceEEEecCCCccccC------CccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence            999999999998866532      2244556666666666643 4454443 5677754434444555554

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.61  E-value=3.4e-07  Score=84.32  Aligned_cols=119  Identities=22%  Similarity=0.406  Sum_probs=78.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHH----hccc-----cC---------CCcEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAAD----VGHI-----NT---------RSEVAGYMGND   88 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~d----l~~~-----~~---------~~~v~~~~~t~   88 (300)
                      .+||+|||+ |.+|..+|..++..++  +|+++|+++.. ....+    +.+.     ..         ...++.   ++
T Consensus         3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~   76 (287)
T PRK08293          3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL---TT   76 (287)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE---eC
Confidence            368999996 9999999999999887  89999996521 11111    1000     00         012332   45


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022263           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (300)
Q Consensus        89 d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~  167 (300)
                      |+++++++||+||++.              .++.+..+++.+++.++++ ++++  ++|....   .++++.+...  .+
T Consensus        77 d~~~a~~~aDlVieav--------------pe~~~~k~~~~~~l~~~~~~~~ii--~sntSt~---~~~~~~~~~~--~~  135 (287)
T PRK08293         77 DLAEAVKDADLVIEAV--------------PEDPEIKGDFYEELAKVAPEKTIF--ATNSSTL---LPSQFAEATG--RP  135 (287)
T ss_pred             CHHHHhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCCCEE--EECcccC---CHHHHHhhcC--Cc
Confidence            7777899999999985              2456777888888888876 5543  5666653   2344444432  35


Q ss_pred             CcEEEe
Q 022263          168 KKLFGV  173 (300)
Q Consensus       168 ~kviG~  173 (300)
                      +|++|+
T Consensus       136 ~r~vg~  141 (287)
T PRK08293        136 EKFLAL  141 (287)
T ss_pred             ccEEEE
Confidence            678876

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.52  E-value=3.9e-07  Score=93.93  Aligned_cols=119  Identities=18%  Similarity=0.229  Sum_probs=85.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccH--HHHh-----ccccC--------CCcEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV--AADV-----GHINT--------RSEVAGYMGND   88 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~--~~dl-----~~~~~--------~~~v~~~~~t~   88 (300)
                      +..||+|||| |.+|..+|..++..|+  +++|+|.+..   ++.  ..+.     .....        ..+++.   ++
T Consensus       312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~  385 (714)
T TIGR02437       312 DVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP---TL  385 (714)
T ss_pred             ccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eC
Confidence            5568999996 9999999999999998  9999999652   111  1111     11000        113433   45


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022263           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (300)
Q Consensus        89 d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~  167 (300)
                      |+ +++++||+||.++              .++.++.+++..++.+++| ++++  .||.+..   -++++....  -.|
T Consensus       386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asnTS~l---~i~~ia~~~--~~p  443 (714)
T TIGR02437       386 SY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAIL--ASNTSTI---SISLLAKAL--KRP  443 (714)
T ss_pred             CH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCC---CHHHHHhhc--CCc
Confidence            66 6799999999984              5789999999999999985 6665  8998875   345555443  347


Q ss_pred             CcEEEe
Q 022263          168 KKLFGV  173 (300)
Q Consensus       168 ~kviG~  173 (300)
                      +|++|+
T Consensus       444 ~r~ig~  449 (714)
T TIGR02437       444 ENFCGM  449 (714)
T ss_pred             ccEEEE
Confidence            899998

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.52  E-value=5e-07  Score=93.21  Aligned_cols=119  Identities=20%  Similarity=0.238  Sum_probs=85.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccH--H---H-Hh-ccccC--------CCcEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV--A---A-DV-GHINT--------RSEVAGYMGND   88 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~--~---~-dl-~~~~~--------~~~v~~~~~t~   88 (300)
                      +..||+|||| |.+|..+|..++..|+  +++|+|++..   ++.  .   + .+ .....        ..+++.   ++
T Consensus       312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~  385 (715)
T PRK11730        312 PVKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP---TL  385 (715)
T ss_pred             ccceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eC
Confidence            3458999996 9999999999999998  9999999752   111  1   0 01 11000        123443   45


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022263           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (300)
Q Consensus        89 d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~  167 (300)
                      |+ +++++||+||.++              .++.++.+++..++.+++| ++++  .||.+..   -++++.....  .|
T Consensus       386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl---~i~~la~~~~--~p  443 (715)
T PRK11730        386 DY-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDTIL--ASNTSTI---SISLLAKALK--RP  443 (715)
T ss_pred             CH-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCcEE--EEcCCCC---CHHHHHhhcC--CC
Confidence            76 6799999999984              5789999999999999996 6554  8998875   2455555443  47


Q ss_pred             CcEEEe
Q 022263          168 KKLFGV  173 (300)
Q Consensus       168 ~kviG~  173 (300)
                      +|++|+
T Consensus       444 ~r~~g~  449 (715)
T PRK11730        444 ENFCGM  449 (715)
T ss_pred             ccEEEE
Confidence            889997

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.52  E-value=5.8e-07  Score=92.93  Aligned_cols=119  Identities=19%  Similarity=0.291  Sum_probs=85.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccH--HHH-hcc----ccC--------CCcEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV--AAD-VGH----INT--------RSEVAGYMGND   88 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~--~~d-l~~----~~~--------~~~v~~~~~t~   88 (300)
                      +..||+|||| |.+|..+|..++..|+  +|+|+|+++.   ++.  ..+ +..    ...        ..+++.   ++
T Consensus       334 ~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~  407 (737)
T TIGR02441       334 PVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP---TL  407 (737)
T ss_pred             cccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eC
Confidence            4458999996 9999999999999998  9999999652   111  111 110    000        123443   45


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022263           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (300)
Q Consensus        89 d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~  167 (300)
                      |+ +++++||+||.++              .+|.++.+++..++.+++| ++++  .||.+..-   ++++.....  .|
T Consensus       408 ~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~---i~~la~~~~--~p  465 (737)
T TIGR02441       408 DY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCII--ASNTSALP---IKDIAAVSS--RP  465 (737)
T ss_pred             CH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcEE--EEcCCCCC---HHHHHhhcC--Cc
Confidence            76 6799999999984              5789999999999999986 6665  89988752   345554433  47


Q ss_pred             CcEEEe
Q 022263          168 KKLFGV  173 (300)
Q Consensus       168 ~kviG~  173 (300)
                      +|++|+
T Consensus       466 ~r~ig~  471 (737)
T TIGR02441       466 EKVIGM  471 (737)
T ss_pred             cceEEE
Confidence            899997

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.49  E-value=7e-07  Score=92.06  Aligned_cols=119  Identities=20%  Similarity=0.333  Sum_probs=84.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHH-hCCCCCEEEEEecCCc---cc--HHHHhc-----ccc--------CCCcEEEEecC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANT---PG--VAADVG-----HIN--------TRSEVAGYMGN   87 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~-~~~~~~el~L~D~~~~---~g--~~~dl~-----~~~--------~~~~v~~~~~t   87 (300)
                      +..||+|||| |.+|..+|..++ ..|+  +|+|+|.+..   ++  ...+..     ...        ...+++.   +
T Consensus       308 ~i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~  381 (708)
T PRK11154        308 PVNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG---T  381 (708)
T ss_pred             cccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE---e
Confidence            4568999996 999999999988 7788  9999999642   11  111111     000        0123443   4


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCC
Q 022263           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (300)
Q Consensus        88 ~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~  166 (300)
                      +|+ +++++||+||.++              .+|.++.+++..++.++++ ++++  .||.+...   ++++....  -.
T Consensus       382 ~~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~il--asnTS~l~---i~~la~~~--~~  439 (708)
T PRK11154        382 TDY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTIF--ASNTSSLP---IGQIAAAA--AR  439 (708)
T ss_pred             CCh-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHHhc--Cc
Confidence            576 6899999999984              5789999999999999984 7665  89988753   44554443  24


Q ss_pred             CCcEEEe
Q 022263          167 EKKLFGV  173 (300)
Q Consensus       167 ~~kviG~  173 (300)
                      |+|++|+
T Consensus       440 p~r~ig~  446 (708)
T PRK11154        440 PEQVIGL  446 (708)
T ss_pred             ccceEEE
Confidence            6789998

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.47  E-value=1.3e-07  Score=82.85  Aligned_cols=124  Identities=17%  Similarity=0.303  Sum_probs=87.9

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc------ccHHHHhccccC-----------------CCc
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT------PGVAADVGHINT-----------------RSE   80 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~------~g~~~dl~~~~~-----------------~~~   80 (300)
                      ...+...|+|+|| |.+|+.+|+..++.|+  .+.|+|.++.      ++....+.+...                 -.+
T Consensus         7 ~~~~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r   83 (298)
T KOG2304|consen    7 NMAEIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR   83 (298)
T ss_pred             ccccccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence            3445668999996 9999999999999999  8999999751      222222221110                 012


Q ss_pred             EEEEecCCccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHH
Q 022263           81 VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVF  159 (300)
Q Consensus        81 v~~~~~t~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~  159 (300)
                      ++.   ++|..++++|||+||.+              +.+|+.+.+++.+.+.+.|+ ++++  .||....   -++.+.
T Consensus        84 i~~---~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~il--~tNTSSl---~lt~ia  141 (298)
T KOG2304|consen   84 IKT---STNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSSTIL--ATNTSSL---SLTDIA  141 (298)
T ss_pred             HHH---cCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccceEE--eecccce---eHHHHH
Confidence            222   45778889999999876              47899999999999999997 5544  8998875   234443


Q ss_pred             HHhCCCCCCcEEEee
Q 022263          160 KKAGTYNEKKLFGVT  174 (300)
Q Consensus       160 ~~~~~~~~~kviG~t  174 (300)
                      ...  -.|.++.|+.
T Consensus       142 ~~~--~~~srf~GlH  154 (298)
T KOG2304|consen  142 SAT--QRPSRFAGLH  154 (298)
T ss_pred             hhc--cChhhhceee
Confidence            332  4578999995

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.47  E-value=1e-06  Score=90.69  Aligned_cols=119  Identities=18%  Similarity=0.284  Sum_probs=83.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHH-hCCCCCEEEEEecCCc---cc--HHH-Hhccc----cC--------CCcEEEEecC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANT---PG--VAA-DVGHI----NT--------RSEVAGYMGN   87 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~-~~~~~~el~L~D~~~~---~g--~~~-dl~~~----~~--------~~~v~~~~~t   87 (300)
                      +..||+|||| |.+|..+|..++ ..|+  +|+|+|+++.   ++  ... .+...    ..        ...++.   +
T Consensus       303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~  376 (699)
T TIGR02440       303 KIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG---T  376 (699)
T ss_pred             cccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE---e
Confidence            4568999996 999999999888 4788  9999999752   11  111 11110    00        113443   4


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCC
Q 022263           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (300)
Q Consensus        88 ~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~  166 (300)
                      +|+ +++++||+||.++              .++.++.+++..++.++++ ++++  .||.+...   ++++....  -.
T Consensus       377 ~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l~---i~~la~~~--~~  434 (699)
T TIGR02440       377 TDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTIF--ASNTSSLP---IGQIAAAA--SR  434 (699)
T ss_pred             CCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcEE--EeCCCCCC---HHHHHHhc--CC
Confidence            576 6899999999984              5788999999999999996 6654  89988753   34444443  34


Q ss_pred             CCcEEEe
Q 022263          167 EKKLFGV  173 (300)
Q Consensus       167 ~~kviG~  173 (300)
                      |+|++|+
T Consensus       435 p~r~~g~  441 (699)
T TIGR02440       435 PENVIGL  441 (699)
T ss_pred             cccEEEE
Confidence            7889997

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.45  E-value=2.3e-06  Score=84.22  Aligned_cols=120  Identities=16%  Similarity=0.175  Sum_probs=77.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHH-------------HHhccccCCCcEEEEecCCcccccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-------------ADVGHINTRSEVAGYMGNDQLGQAL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~-------------~dl~~~~~~~~v~~~~~t~d~~~a~   94 (300)
                      +|||+|||+ |+||..+|..|+..|.--+++.+|+++.+-..             .++........++.   |+|+++++
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~---t~~~~~~i   76 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF---STDVEKHV   76 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE---EcCHHHHH
Confidence            689999995 99999999999987532389999997532111             11110000111332   46777789


Q ss_pred             CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe--cCCCcccH
Q 022263           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTV  152 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~--tNP~d~~~  152 (300)
                      ++||++|++.+.|..++....+ -.-+...+.+.++.|.++.+++.+|+.  |-|..+.-
T Consensus        77 ~~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~  135 (473)
T PLN02353         77 AEADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE  135 (473)
T ss_pred             hcCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHH
Confidence            9999999999988754210001 123556678888888887765544444  77888543

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.44  E-value=2.9e-06  Score=77.85  Aligned_cols=118  Identities=21%  Similarity=0.370  Sum_probs=77.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc---H-----H-HHhcccc-C--------CCcEEEEecCCc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---V-----A-ADVGHIN-T--------RSEVAGYMGNDQ   89 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g---~-----~-~dl~~~~-~--------~~~v~~~~~t~d   89 (300)
                      +.||+|||+ |.||..++..++..++  +++++|+++...   .     . .++.+.. .        ...++.   ++|
T Consensus         3 ~~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~---~~~   76 (282)
T PRK05808          3 IQKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG---TTD   76 (282)
T ss_pred             ccEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence            458999996 9999999999999987  899999865311   1     0 0111110 0        013332   346


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022263           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (300)
Q Consensus        90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~  168 (300)
                      + +++++||+||+++              .++..+.+++.+.+.++++ ++++  +||-....   ++++....+  .+.
T Consensus        77 ~-~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~---~~~la~~~~--~~~  134 (282)
T PRK05808         77 L-DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLS---ITELAAATK--RPD  134 (282)
T ss_pred             H-HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHHhhC--CCc
Confidence            5 5689999999985              3456777888888998876 6655  66666642   233334332  356


Q ss_pred             cEEEe
Q 022263          169 KLFGV  173 (300)
Q Consensus       169 kviG~  173 (300)
                      +++|+
T Consensus       135 r~ig~  139 (282)
T PRK05808        135 KVIGM  139 (282)
T ss_pred             ceEEe
Confidence            78887

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.42  E-value=4.4e-07  Score=76.29  Aligned_cols=94  Identities=26%  Similarity=0.378  Sum_probs=62.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhcccc--------CCCcEEEEecCCccccccCCCCEEE
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--------TRSEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~--------~~~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      ||+|+|| |+.|.++|..|+.++.  ++.||+.++.....+.-.+..        .+..+..   ++|+++++++||+||
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~---t~dl~~a~~~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA---TTDLEEALEDADIII   74 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE---ESSHHHHHTT-SEEE
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc---ccCHHHHhCcccEEE
Confidence            8999996 9999999999999997  999999865322222222221        1223443   578889999999999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEec
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMIS  145 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~t  145 (300)
                      ++.-                ....+++++++..+-+ +..+++++
T Consensus        75 iavP----------------s~~~~~~~~~l~~~l~~~~~ii~~~  103 (157)
T PF01210_consen   75 IAVP----------------SQAHREVLEQLAPYLKKGQIIISAT  103 (157)
T ss_dssp             E-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred             eccc----------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence            9842                2335777788887764 55555544

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=98.38  E-value=4.8e-06  Score=81.29  Aligned_cols=173  Identities=13%  Similarity=0.052  Sum_probs=97.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      .++|||.|+||+|+||++++..|...+.  +|+.+|.... +....+.+......+..+.+ +-++.++.++|+||++|+
T Consensus       118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~-~~~~~~~~~~~~~~~~~~~~-Di~~~~~~~~D~ViHlAa  193 (436)
T PLN02166        118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFT-GRKENLVHLFGNPRFELIRH-DVVEPILLEVDQIYHLAC  193 (436)
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCC-ccHhHhhhhccCCceEEEEC-ccccccccCCCEEEECce
Confidence            4568999999999999999999999887  9999997431 11111111110112332221 123345789999999997


Q ss_pred             CCC--CCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCC---cccHHHHHHH-HHHhCCCCCCcEEEeeehhHH
Q 022263          106 VPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV---NSTVPIAAEV-FKKAGTYNEKKLFGVTTLDVV  179 (300)
Q Consensus       106 ~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~---d~~~~i~~~~-~~~~~~~~~~kviG~t~Lds~  179 (300)
                      ...  ....+..+.+..|+....++++.+++.+.  .+|.+|.-.   +......+|- +....-..+....|.+.+...
T Consensus       194 ~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~SK~~aE  271 (436)
T PLN02166        194 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAE  271 (436)
T ss_pred             eccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHHHHHHH
Confidence            532  11223456778999999999999988753  455553210   0000000010 000000223344555544444


Q ss_pred             HHHHHHHHHcCCCCCceEE-EEEecC
Q 022263          180 RAKTFYAGKANVNVAEVNV-PVVGGH  204 (300)
Q Consensus       180 R~~~~la~~l~v~~~~V~~-~v~G~h  204 (300)
                      ++....++..+++..-++. .++|.+
T Consensus       272 ~~~~~y~~~~~l~~~ilR~~~vYGp~  297 (436)
T PLN02166        272 TLAMDYHRGAGVEVRIARIFNTYGPR  297 (436)
T ss_pred             HHHHHHHHHhCCCeEEEEEccccCCC
Confidence            5444455556666555553 377764

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.36  E-value=5.8e-06  Score=76.28  Aligned_cols=118  Identities=14%  Similarity=0.303  Sum_probs=75.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHH--------hc---cccC---------CCcEEEEecC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAAD--------VG---HINT---------RSEVAGYMGN   87 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~d--------l~---~~~~---------~~~v~~~~~t   87 (300)
                      .||+|||+ |.+|..++..++..|+  +|+++|+++..- ...+        +.   +...         ...+..   +
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~   77 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT---S   77 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe---e
Confidence            58999996 9999999999999988  899999975311 1101        11   0000         011222   3


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCC
Q 022263           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (300)
Q Consensus        88 ~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~  166 (300)
                      +++ +++++||+||++.              ..+.++.+++.+++.++++ ++++  +||....   .++++.....  .
T Consensus        78 ~~~-~~~~~aDlVieav--------------~e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~---~~~~la~~~~--~  135 (291)
T PRK06035         78 TSY-ESLSDADFIVEAV--------------PEKLDLKRKVFAELERNVSPETII--ASNTSGI---MIAEIATALE--R  135 (291)
T ss_pred             CCH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeEE--EEcCCCC---CHHHHHhhcC--C
Confidence            455 6789999999985              2345667888888888875 6655  4665543   2234443322  3


Q ss_pred             CCcEEEee
Q 022263          167 EKKLFGVT  174 (300)
Q Consensus       167 ~~kviG~t  174 (300)
                      ++|++|+.
T Consensus       136 ~~r~ig~h  143 (291)
T PRK06035        136 KDRFIGMH  143 (291)
T ss_pred             cccEEEEe
Confidence            67888873

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.35  E-value=4.2e-06  Score=83.04  Aligned_cols=124  Identities=21%  Similarity=0.293  Sum_probs=81.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-----H---H-Hhcccc-C--------CCcEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----A---A-DVGHIN-T--------RSEVAGYMGND   88 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-----~---~-dl~~~~-~--------~~~v~~~~~t~   88 (300)
                      +..||+|||+ |.||..+|..++..|+  +++++|+++..-.     .   + .+.... .        ..+++.   ++
T Consensus         4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~   77 (503)
T TIGR02279         4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP---VT   77 (503)
T ss_pred             CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE---eC
Confidence            3458999996 9999999999999998  9999999753111     0   0 111110 0        012333   35


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022263           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (300)
Q Consensus        89 d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~  168 (300)
                      ++ +++++||+||.+.              .++..+.+++...+.++++...+ ++||.+..-   ++++.....  .|.
T Consensus        78 ~~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~I-lasnTStl~---i~~iA~~~~--~p~  136 (503)
T TIGR02279        78 DL-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADTI-IASNTSSLS---ITAIAAGLA--RPE  136 (503)
T ss_pred             CH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeE-EEECCCCCC---HHHHHHhcC--ccc
Confidence            66 5689999999984              46778888888889999864433 478887653   233333332  366


Q ss_pred             cEEEeeehh
Q 022263          169 KLFGVTTLD  177 (300)
Q Consensus       169 kviG~t~Ld  177 (300)
                      +++|+..++
T Consensus       137 r~~G~HFf~  145 (503)
T TIGR02279       137 RVAGLHFFN  145 (503)
T ss_pred             ceEEEeccC
Confidence            788874333

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=98.34  E-value=2.6e-06  Score=78.40  Aligned_cols=116  Identities=17%  Similarity=0.249  Sum_probs=78.1

Q ss_pred             EEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCccccccCCCCEEEEcCCCCCCC
Q 022263           32 AVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPAGVPRKP  110 (300)
Q Consensus        32 ~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~~~aDiVIi~ag~~~~~  110 (300)
                      .|+||+|++|++++..|++.+...+|..+|+........++.+......+.. .....+++++++++|+||++|+...-.
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~   80 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPW   80 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccccc
Confidence            3899999999999999999885558999998653222112222211001111 111246778999999999999864333


Q ss_pred             C-CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          111 G-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       111 g-~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      + ..+..+..-|+.-.+.+.+...+.+-+  -+|+|..++
T Consensus        81 ~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk--rlVytSS~~  118 (280)
T PF01073_consen   81 GDYPPEEYYKVNVDGTRNVLEAARKAGVK--RLVYTSSIS  118 (280)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHcCCC--EEEEEcCcc
Confidence            3 456678889999999999999886543  344555554

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.31  E-value=2.7e-06  Score=78.53  Aligned_cols=119  Identities=18%  Similarity=0.313  Sum_probs=72.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHH-----Hhc----cccCC--------CcEEEEecCCc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAA-----DVG----HINTR--------SEVAGYMGNDQ   89 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~-----dl~----~~~~~--------~~v~~~~~t~d   89 (300)
                      .+||+|||+ |.+|..++..|+..++  +|+++|.++..- ...     .+.    ....+        ..++.   +++
T Consensus         4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~   77 (292)
T PRK07530          4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST---ATD   77 (292)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe---eCC
Confidence            358999996 9999999999999988  999999965211 100     010    11000        12332   345


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022263           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (300)
Q Consensus        90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~  168 (300)
                      + +++++||+||++..              ++..+.+.+.+.+.++++ ++++  +||.+...   ++++.+..  -.+.
T Consensus        78 ~-~~~~~aD~Vieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~---~s~la~~~--~~~~  135 (292)
T PRK07530         78 L-EDLADCDLVIEAAT--------------EDETVKRKIFAQLCPVLKPEAIL--ATNTSSIS---ITRLASAT--DRPE  135 (292)
T ss_pred             H-HHhcCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCC---HHHHHhhc--CCcc
Confidence            5 56899999999852              334555566667777764 6655  46665532   23333332  2346


Q ss_pred             cEEEee
Q 022263          169 KLFGVT  174 (300)
Q Consensus       169 kviG~t  174 (300)
                      +++|+.
T Consensus       136 r~~g~h  141 (292)
T PRK07530        136 RFIGIH  141 (292)
T ss_pred             cEEEee
Confidence            677753

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.29  E-value=4.6e-06  Score=73.87  Aligned_cols=101  Identities=21%  Similarity=0.159  Sum_probs=62.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccC--CCcEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~--~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      |||+|||++|++|++++..|...+.  +|.++|+++.+.  ...++.+...  ........ + +..++++++|+||++.
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~-~-~~~ea~~~aDvVilav   76 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG-A-DNAEAAKRADVVILAV   76 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE-e-ChHHHHhcCCEEEEEC
Confidence            6999997459999999999999886  899999865322  1222211110  00111111 2 3357889999999985


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      -.                ..+.++++.+...-++.++|-++||.+
T Consensus        77 p~----------------~~~~~~l~~l~~~l~~~vvI~~~ngi~  105 (219)
T TIGR01915        77 PW----------------DHVLKTLESLRDELSGKLVISPVVPLA  105 (219)
T ss_pred             CH----------------HHHHHHHHHHHHhccCCEEEEeccCce
Confidence            31                223334444444334467888899987

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.26  E-value=6.6e-06  Score=81.78  Aligned_cols=121  Identities=17%  Similarity=0.250  Sum_probs=79.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---cc--HHHH----hcccc-C--------CCcEEEEecCCcc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG--VAAD----VGHIN-T--------RSEVAGYMGNDQL   90 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g--~~~d----l~~~~-~--------~~~v~~~~~t~d~   90 (300)
                      .||+|||+ |.+|..+|..++..|+  +|+++|+++.   ++  ...+    +.... .        ..+++.   ++++
T Consensus         8 ~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~~~   81 (507)
T PRK08268          8 ATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP---VEAL   81 (507)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCCH
Confidence            58999996 9999999999999998  9999999753   11  0111    11100 0        012443   3466


Q ss_pred             ccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCCc
Q 022263           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKK  169 (300)
Q Consensus        91 ~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~k  169 (300)
                       +++++||+||.+.              .++..+.+.+...+.+.++ ++++  +||.+..-   ++++....  -.|+|
T Consensus        82 -~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ail--asntStl~---i~~la~~~--~~p~r  139 (507)
T PRK08268         82 -ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCIL--ATNTSSLS---ITAIAAAL--KHPER  139 (507)
T ss_pred             -HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHhhc--CCccc
Confidence             5688999999984              4677888888888999874 6655  56665432   23333332  24678


Q ss_pred             EEEeeehh
Q 022263          170 LFGVTTLD  177 (300)
Q Consensus       170 viG~t~Ld  177 (300)
                      ++|+..++
T Consensus       140 ~~G~hff~  147 (507)
T PRK08268        140 VAGLHFFN  147 (507)
T ss_pred             EEEEeecC
Confidence            88874433

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.25  E-value=1.4e-05  Score=74.49  Aligned_cols=120  Identities=20%  Similarity=0.284  Sum_probs=73.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HH--------HhccccC---------CCcEEEEecCCc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AA--------DVGHINT---------RSEVAGYMGNDQ   89 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~--------dl~~~~~---------~~~v~~~~~t~d   89 (300)
                      ++||+|||+ |.+|..++..|+..|+  +|++||.++.... ..        .+.+...         ...++.   +++
T Consensus         2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~---~~~   75 (308)
T PRK06129          2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV---TDS   75 (308)
T ss_pred             CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE---ECc
Confidence            469999995 9999999999999998  8999999753111 00        1111110         112332   357


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCc
Q 022263           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKK  169 (300)
Q Consensus        90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~k  169 (300)
                      +.+++++||+|+.+..              .+....+.+...+.+..++..++ .||....   .+.++.+...  .+.+
T Consensus        76 ~~~a~~~ad~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~ii-~ssts~~---~~~~la~~~~--~~~~  135 (308)
T PRK06129         76 LADAVADADYVQESAP--------------ENLELKRALFAELDALAPPHAIL-ASSTSAL---LASAFTEHLA--GRER  135 (308)
T ss_pred             HHHhhCCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCcceE-EEeCCCC---CHHHHHHhcC--Cccc
Confidence            7778999999999852              23444555666677777654444 4665532   2333443322  2445


Q ss_pred             EEEe
Q 022263          170 LFGV  173 (300)
Q Consensus       170 viG~  173 (300)
                      +++.
T Consensus       136 ~~~~  139 (308)
T PRK06129        136 CLVA  139 (308)
T ss_pred             EEEE
Confidence            5555

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.24  E-value=4.5e-06  Score=76.93  Aligned_cols=99  Identities=21%  Similarity=0.283  Sum_probs=64.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-H----HHhccc-----cC--------CCcEEEEecCCcc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-A----ADVGHI-----NT--------RSEVAGYMGNDQL   90 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~----~dl~~~-----~~--------~~~v~~~~~t~d~   90 (300)
                      .||+|||+ |.+|..+|..|+..++  +|+++|+++..-. .    .++...     ..        ...++.   ++++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~   75 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY---SLDL   75 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCcH
Confidence            48999996 9999999999999887  8999999753111 0    011000     00        012332   3567


Q ss_pred             ccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCc
Q 022263           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVN  149 (300)
Q Consensus        91 ~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d  149 (300)
                      ++++++||+||.+..              ++..+.+.+...+.++++ ++++  ++|...
T Consensus        76 ~~~~~~aD~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~il--~~~tSt  119 (288)
T PRK09260         76 KAAVADADLVIEAVP--------------EKLELKKAVFETADAHAPAECYI--ATNTST  119 (288)
T ss_pred             HHhhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCC
Confidence            788999999999852              334555666667777765 5544  445443

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.23  E-value=8.7e-06  Score=80.74  Aligned_cols=101  Identities=15%  Similarity=0.126  Sum_probs=67.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHH-H--------hc---cccC--CCcEEEEecCCcccccc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA-D--------VG---HINT--RSEVAGYMGNDQLGQAL   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~-d--------l~---~~~~--~~~v~~~~~t~d~~~a~   94 (300)
                      |||+|||+ |.+|+.+|..|+..|+  +|.++|+++...... +        +.   ....  ...++.   ++++++++
T Consensus         5 ~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~---~~~~~ea~   78 (495)
T PRK07531          5 MKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF---CASLAEAV   78 (495)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe---eCCHHHHh
Confidence            58999995 9999999999999998  999999965321110 1        00   0000  011332   35677889


Q ss_pred             CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcc
Q 022263           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~  150 (300)
                      ++||+||.+.              .++..+.+++...+.+.++... ++.||.+..
T Consensus        79 ~~aD~Vieav--------------pe~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi  119 (495)
T PRK07531         79 AGADWIQESV--------------PERLDLKRRVLAEIDAAARPDA-LIGSSTSGF  119 (495)
T ss_pred             cCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCC
Confidence            9999999874              3445666777777888776443 347777764

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=98.22  E-value=9.5e-06  Score=76.53  Aligned_cols=169  Identities=15%  Similarity=0.085  Sum_probs=100.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhc-cc--cCCCcEEEEecC----CccccccCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVG-HI--NTRSEVAGYMGN----DQLGQALED   96 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~-~~--~~~~~v~~~~~t----~d~~~a~~~   96 (300)
                      .+++||.|+||+|++|++++..|...+.  +|+.+|.....  ....++. ..  .....+..+.+.    .++.+.+++
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~   90 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKN   90 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhC
Confidence            3567999999999999999999998886  89999974311  0111111 00  000123332221    123455789


Q ss_pred             CCEEEEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCC------CcccHHHHHHHHHHhCCCCCC
Q 022263           97 SDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP------VNSTVPIAAEVFKKAGTYNEK  168 (300)
Q Consensus        97 aDiVIi~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP------~d~~~~i~~~~~~~~~~~~~~  168 (300)
                      +|+||++|+....+.  ....+....|+....++.+.+++.... .+|.+|..      .+.  +. .   .... ..|.
T Consensus        91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~~~--~~-~---e~~~-~~p~  162 (348)
T PRK15181         91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHPDL--PK-I---EERI-GRPL  162 (348)
T ss_pred             CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCCCC--CC-C---CCCC-CCCC
Confidence            999999998643221  233456778999999999999887544 33434311      110  00 0   1111 2344


Q ss_pred             cEEEeeehhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263          169 KLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       169 kviG~t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                      ...|.+.+...++....++..+++...++ ..+.|.+
T Consensus       163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~  199 (348)
T PRK15181        163 SPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRR  199 (348)
T ss_pred             ChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcC
Confidence            56677655555555555667788877776 4488875

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.21  E-value=1.5e-05  Score=74.19  Aligned_cols=119  Identities=18%  Similarity=0.309  Sum_probs=71.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HHH-hc---ccc--------CCCcEEEEecCCcccccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AAD-VG---HIN--------TRSEVAGYMGNDQLGQAL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~d-l~---~~~--------~~~~v~~~~~t~d~~~a~   94 (300)
                      .+||+|||+ |.+|..++..|+..++  +|+++|.+..... ..+ +.   ...        ....++.   ++++++++
T Consensus         4 ~~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~   77 (311)
T PRK06130          4 IQNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM---EAGLAAAV   77 (311)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE---eCCHHHHh
Confidence            468999996 9999999999999887  8999998652111 100 00   000        0011222   34666778


Q ss_pred             CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      ++||+||++.-              .......++...+..+.+ ++++  +||....-   ++++.+...  .+.+++|+
T Consensus        78 ~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~~---~~~l~~~~~--~~~~~ig~  136 (311)
T PRK06130         78 SGADLVIEAVP--------------EKLELKRDVFARLDGLCDPDTIF--ATNTSGLP---ITAIAQAVT--RPERFVGT  136 (311)
T ss_pred             ccCCEEEEecc--------------CcHHHHHHHHHHHHHhCCCCcEE--EECCCCCC---HHHHHhhcC--CcccEEEE
Confidence            99999999852              233445566666777664 5544  45555432   233333322  24567776

>PLN02427 UDP-apiose/xylose synthase

Probab=98.21  E-value=1.1e-05  Score=77.00  Aligned_cols=117  Identities=14%  Similarity=0.067  Sum_probs=72.2

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhC-CCCCEEEEEecCCcccHHHHhcccc---CCCcEEEEec----CCccccccC
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHIN---TRSEVAGYMG----NDQLGQALE   95 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~-~~~~el~L~D~~~~~g~~~dl~~~~---~~~~v~~~~~----t~d~~~a~~   95 (300)
                      +..++|||.|+||+|++|++++..|... +.  +|+.+|.......  .+....   ....++.+.+    ..++.++++
T Consensus        10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~~~--~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~   85 (386)
T PLN02427         10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDKIK--HLLEPDTVPWSGRIQFHRINIKHDSRLEGLIK   85 (386)
T ss_pred             CcccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchhhh--hhhccccccCCCCeEEEEcCCCChHHHHHHhh
Confidence            3456789999999999999999999987 45  8999987432111  111100   0112333221    123456788


Q ss_pred             CCCEEEEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ++|+||++|+......  ....+.+..|+.-...+.+..++.+  ..+|.+|.
T Consensus        86 ~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS  136 (386)
T PLN02427         86 MADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFST  136 (386)
T ss_pred             cCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEee
Confidence            9999999998642111  1223455678777777888777654  34555553

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.20  E-value=2.3e-05  Score=72.95  Aligned_cols=94  Identities=21%  Similarity=0.370  Sum_probs=64.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhcc--cc--------CCCcEEEEecCCccccccCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH--IN--------TRSEVAGYMGNDQLGQALEDS   97 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~--~~--------~~~~v~~~~~t~d~~~a~~~a   97 (300)
                      ++||+|+|| |.-|.++|..|+..++  ++.||.+++..  +.|+++  .+        .+..++   .++|+.+++++|
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~~~--~~~i~~~~~N~~yLp~i~lp~~l~---at~Dl~~a~~~a   72 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDEEI--VAEINETRENPKYLPGILLPPNLK---ATTDLAEALDGA   72 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCHHH--HHHHHhcCcCccccCCccCCcccc---cccCHHHHHhcC
Confidence            579999996 9999999999999987  99999986532  223332  22        122333   367999999999


Q ss_pred             CEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEec
Q 022263           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (300)
Q Consensus        98 DiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~t  145 (300)
                      |+|++..-                ...++++++++..+- ++.+++.+|
T Consensus        73 d~iv~avP----------------s~~~r~v~~~l~~~l~~~~~iv~~s  105 (329)
T COG0240          73 DIIVIAVP----------------SQALREVLRQLKPLLLKDAIIVSAT  105 (329)
T ss_pred             CEEEEECC----------------hHHHHHHHHHHhhhccCCCeEEEEe
Confidence            99999852                233455555554332 455666654

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.19  E-value=5.7e-06  Score=76.43  Aligned_cols=118  Identities=22%  Similarity=0.319  Sum_probs=72.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-H--------HHhccccC---------CCcEEEEecCCc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-A--------ADVGHINT---------RSEVAGYMGNDQ   89 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~--------~dl~~~~~---------~~~v~~~~~t~d   89 (300)
                      ..||+|||+ |.+|..+|..|+..|+  +|+++|.+..... .        .++.+...         ...+..   +++
T Consensus         4 ~~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~   77 (295)
T PLN02545          4 IKKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC---TTN   77 (295)
T ss_pred             cCEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe---eCC
Confidence            358999996 9999999999999887  9999998652111 0        01111100         001222   345


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022263           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (300)
Q Consensus        90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~  168 (300)
                      + +++++||+||.+.              .++.++...+...+.++.+ ++++  +||-....   ++++.+...  .+.
T Consensus        78 ~-~~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i~---~~~l~~~~~--~~~  135 (295)
T PLN02545         78 L-EELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAIL--ASNTSSIS---ITRLASATQ--RPQ  135 (295)
T ss_pred             H-HHhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHhhcC--CCc
Confidence            4 6789999999984              3455666777777877764 6554  46665532   223333221  245


Q ss_pred             cEEEe
Q 022263          169 KLFGV  173 (300)
Q Consensus       169 kviG~  173 (300)
                      +++|+
T Consensus       136 r~~g~  140 (295)
T PLN02545        136 QVIGM  140 (295)
T ss_pred             ceEEE
Confidence            66666

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=98.18  E-value=2e-05  Score=73.45  Aligned_cols=118  Identities=14%  Similarity=0.077  Sum_probs=81.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--cc--HHHHhccccCCCcEEEEec----CCccccccCCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PG--VAADVGHINTRSEVAGYMG----NDQLGQALEDSD   98 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g--~~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aD   98 (300)
                      ..++|+|+||+|+||+.+...|+++|+  +|+--=+++.  +.  ...+|....  .+++.+.+    ...+++++++||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~--~~l~l~~aDL~d~~sf~~ai~gcd   80 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK--ERLKLFKADLLDEGSFDKAIDGCD   80 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc--ccceEEeccccccchHHHHHhCCC
Confidence            567999999999999999999999998  5554444332  22  244454332  12332221    234678999999


Q ss_pred             EEEEcCCCCCCCCC-cchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263           99 VVIIPAGVPRKPGM-TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus        99 iVIi~ag~~~~~g~-~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      .||++|....-... .-.+++.-.++-...+.+.+++.. ...-+|+|+...
T Consensus        81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~a  131 (327)
T KOG1502|consen   81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTA  131 (327)
T ss_pred             EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHH
Confidence            99999976432222 234678889999999999999887 555666776554

>PLN02572 UDP-sulfoquinovose synthase

Probab=98.15  E-value=1.3e-05  Score=78.30  Aligned_cols=181  Identities=19%  Similarity=0.193  Sum_probs=102.3

Q ss_pred             CCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---cc------------HHHHhccc--cCCCcEEE
Q 022263           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG------------VAADVGHI--NTRSEVAG   83 (300)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g------------~~~dl~~~--~~~~~v~~   83 (300)
                      =++...+++||.|+||+|++|++++..|+..|.  +|+++|....   ..            ....+.+.  .....++.
T Consensus        40 ~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~  117 (442)
T PLN02572         40 GSSSSSKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIEL  117 (442)
T ss_pred             CCCccccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceE
Confidence            345556778999999999999999999999887  8999985211   00            00011000  00001222


Q ss_pred             EecC-C---ccccccC--CCCEEEEcCCCCCCCC-C-cc---hhhhhhhHHHHHHHHHHHHhhCCCeEEEEec------C
Q 022263           84 YMGN-D---QLGQALE--DSDVVIIPAGVPRKPG-M-TR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMIS------N  146 (300)
Q Consensus        84 ~~~t-~---d~~~a~~--~aDiVIi~ag~~~~~g-~-~r---~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t------N  146 (300)
                      +.+. .   ++.++++  ++|+||++|+....+- . +.   ...+..|+.....+.+.+++.+....++.+|      +
T Consensus       118 v~~Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~  197 (442)
T PLN02572        118 YVGDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGT  197 (442)
T ss_pred             EECCCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCC
Confidence            2111 1   2334455  4899999986532211 1 11   2235679999999999998887655555443      1


Q ss_pred             C---CcccHHH-HHHHH-HHh--CCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263          147 P---VNSTVPI-AAEVF-KKA--GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       147 P---~d~~~~i-~~~~~-~~~--~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                      |   ++.. ++ ..+.. ...  ....|...+|.+.+-...+....++..|++..-++ ..|+|.+
T Consensus       198 ~~~~~~E~-~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~  262 (442)
T PLN02572        198 PNIDIEEG-YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVR  262 (442)
T ss_pred             CCCCCccc-ccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCC
Confidence            1   1100 00 00000 000  01234567888766555666667788888777776 4488876

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.13  E-value=5.7e-06  Score=63.20  Aligned_cols=94  Identities=21%  Similarity=0.322  Sum_probs=61.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCC-CCEEEEE-ecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPL-VSRLALY-DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~-D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      ||+|||+ |++|.+++..|...+. -.+|.++ +.++.+.  .++....   .+...  +.+..++++++|+||++.-  
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~--~~~~~~~---~~~~~--~~~~~~~~~~advvilav~--   70 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKA--AELAKEY---GVQAT--ADDNEEAAQEADVVILAVK--   70 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHH--HHHHHHC---TTEEE--SEEHHHHHHHTSEEEE-S---
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHH--HHHHHhh---ccccc--cCChHHhhccCCEEEEEEC--
Confidence            7999995 9999999999998883 2388866 7754322  2333221   12222  1245688999999999852  


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022263          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                        |            ..+.++++.+....++.++|-++||
T Consensus        71 --p------------~~~~~v~~~i~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   71 --P------------QQLPEVLSEIPHLLKGKLVISIAAG   96 (96)
T ss_dssp             --G------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred             --H------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence              1            1245566666555578888887776

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN02206 UDP-glucuronate decarboxylase

Probab=98.12  E-value=2.8e-05  Score=76.03  Aligned_cols=113  Identities=16%  Similarity=0.028  Sum_probs=72.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      +.|||.|+||+|+||++++..|.+.+.  +|+.+|....... ..+.+......++...+ +-.+.++.++|+||++|+.
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~~-~~~~~~~~~~~~~~i~~-D~~~~~l~~~D~ViHlAa~  193 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGRK-ENVMHHFSNPNFELIRH-DVVEPILLEVDQIYHLACP  193 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccch-hhhhhhccCCceEEEEC-CccChhhcCCCEEEEeeee
Confidence            457999999999999999999999887  8999886321100 11111001112332221 1123457889999999975


Q ss_pred             CCC--CCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          107 PRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       107 ~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ...  ...+..+.+..|+.....+.+.+++..  ..+|.+|
T Consensus       194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~S  232 (442)
T PLN02206        194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTS  232 (442)
T ss_pred             cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEEC
Confidence            321  112345677889999999999988775  3555554

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.10  E-value=4.4e-05  Score=73.95  Aligned_cols=118  Identities=24%  Similarity=0.288  Sum_probs=73.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC----------------CCcEEEEecCCcccc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLGQ   92 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~d~~~   92 (300)
                      |||+|||. |.||..+|..|+..|+  +|+.+|+++.+..  ++.....                ...++.   ++++.+
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~v~--~l~~g~~~~~e~~l~~~~~~~~~~g~l~~---~~~~~~   72 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEKVD--KLNKGKSPIYEPGLDELLAKALAAGRLRA---TTDYED   72 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHHHH--HhhcCCCCCCCCCHHHHHHHhhhcCCeEE---ECCHHH
Confidence            68999995 9999999999999888  8999999653222  2222110                012332   346667


Q ss_pred             ccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEe-cCCCcccHHHHHHHHH
Q 022263           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNSTVPIAAEVFK  160 (300)
Q Consensus        93 a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~~~i~~~~~~  160 (300)
                      ++++||+||++...|..+..      .-+...+.+..+.+.++- ++.+++.. |-|..+.-.+...+.+
T Consensus        73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~  136 (411)
T TIGR03026        73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILE  136 (411)
T ss_pred             HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHH
Confidence            89999999999887754321      234555666666666653 45555444 4455543334333333

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PLN00198 anthocyanidin reductase; Provisional

Probab=98.09  E-value=5.1e-05  Score=70.99  Aligned_cols=176  Identities=13%  Similarity=0.069  Sum_probs=96.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccccCCCcEEEEec----CCccccccCCCCEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVI  101 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aDiVI  101 (300)
                      .+++|.|+||+|++|++++..|++.+.  +|++++++... ....++........+..+.+    ..++.+.++++|+||
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   85 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF   85 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence            356899999999999999999999887  88777665321 11111111100012222221    123456678999999


Q ss_pred             EcCCCCCCCCCc-chhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcc-------cHHHHHHHH-----HHhCCCCCC
Q 022263          102 IPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS-------TVPIAAEVF-----KKAGTYNEK  168 (300)
Q Consensus       102 i~ag~~~~~g~~-r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~-------~~~i~~~~~-----~~~~~~~~~  168 (300)
                      ++|+.......+ ..+++..|+.....+.+.+.+...-..+|.+|.-...       ....+.|-.     ......+|.
T Consensus        86 h~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~  165 (338)
T PLN00198         86 HVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPT  165 (338)
T ss_pred             EeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCcc
Confidence            999853211122 2345678999999999998876432244444321100       000000100     000012344


Q ss_pred             cEEEeeehhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263          169 KLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       169 kviG~t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                      ...|.+.+-..++....++..+++..-++ ..|.|.+
T Consensus       166 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~  202 (338)
T PLN00198        166 WGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS  202 (338)
T ss_pred             chhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence            44555544444555556666777666665 3477875

>CHL00194 ycf39 Ycf39; Provisional

Probab=98.06  E-value=2.6e-05  Score=72.60  Aligned_cols=105  Identities=11%  Similarity=0.008  Sum_probs=69.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec----CCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aDiVIi~a  104 (300)
                      |||.|+||+|++|++++..|...|+  +|+.++++.....  .+.+.    .++.+.+    ..++.++++++|+||.++
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~~--~l~~~----~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~   72 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKAS--FLKEW----GAELVYGDLSLPETLPPSFKGVTAIIDAS   72 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHhh--hHhhc----CCEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence            6999999999999999999999887  8998887542211  11111    1221111    124567899999999987


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +....   ...+....|......+++.+++.+-+ .+|.+|
T Consensus        73 ~~~~~---~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~S  109 (317)
T CHL00194         73 TSRPS---DLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFS  109 (317)
T ss_pred             CCCCC---CccchhhhhHHHHHHHHHHHHHcCCC-EEEEec
Confidence            64211   12234556777788888888887654 344444

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=98.04  E-value=6.5e-05  Score=68.81  Aligned_cols=167  Identities=14%  Similarity=0.081  Sum_probs=94.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cHHHHhccccCCCcEEEEec----CCccccccCC--CCEE
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMG----NDQLGQALED--SDVV  100 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~----t~d~~~a~~~--aDiV  100 (300)
                      ||.|+||+|++|.+++..|+..+...+++++|.....   ....++...   ..+..+.+    ..++.+++++  +|+|
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~v   77 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN---PRYRFVKGDIGDRELVSRLFTEHQPDAV   77 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC---CCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence            5899999999999999988876532378888863211   111122111   12222211    1234456666  8999


Q ss_pred             EEcCCCCCC--CCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCC-----cccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          101 IIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-----NSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       101 Ii~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-----d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      |++|+....  ........+..|......+++.+.+...+..++.+|...     ....+ .++   .. ...+....|.
T Consensus        78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~-~~e---~~-~~~~~~~Y~~  152 (317)
T TIGR01181        78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDA-FTE---TT-PLAPSSPYSA  152 (317)
T ss_pred             EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCC-cCC---CC-CCCCCCchHH
Confidence            999985321  112233456789988999999888775555565554311     00000 001   11 1334445566


Q ss_pred             eehhHHHHHHHHHHHcCCCCCceEEE-EEecC
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVNVP-VVGGH  204 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~~~-v~G~h  204 (300)
                      +.....++-..+++..+++..-++.. ++|..
T Consensus       153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~  184 (317)
T TIGR01181       153 SKAASDHLVRAYHRTYGLPALITRCSNNYGPY  184 (317)
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence            54445555555667777776666533 66754

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.04  E-value=1.4e-05  Score=67.56  Aligned_cols=90  Identities=20%  Similarity=0.271  Sum_probs=59.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      |+||++||. |.+|+.++..|...++  +|..||+++.+.  .++.+..    .+..   .++.++++++|+||.+.   
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~~~~--~~~~~~g----~~~~---~s~~e~~~~~dvvi~~v---   65 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSPEKA--EALAEAG----AEVA---DSPAEAAEQADVVILCV---   65 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSHHHH--HHHHHTT----EEEE---SSHHHHHHHBSEEEE-S---
T ss_pred             CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccchhhh--hhhHHhh----hhhh---hhhhhHhhcccceEeec---
Confidence            689999995 9999999999999998  999999865322  2334322    3332   45678899999999984   


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHH--HHhhC-CCeEEEEe
Q 022263          108 RKPGMTRDDLFNINAGIVKDLCSA--IAKYC-PNAIVNMI  144 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~~i~~~--i~~~~-p~a~viv~  144 (300)
                                  .+.+.++++...  +.... +..++|..
T Consensus        66 ------------~~~~~v~~v~~~~~i~~~l~~g~iiid~   93 (163)
T PF03446_consen   66 ------------PDDDAVEAVLFGENILAGLRPGKIIIDM   93 (163)
T ss_dssp             ------------SSHHHHHHHHHCTTHGGGS-TTEEEEE-
T ss_pred             ------------ccchhhhhhhhhhHHhhccccceEEEec
Confidence                        234556666665  55554 44455433

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.03  E-value=3.5e-05  Score=71.70  Aligned_cols=100  Identities=19%  Similarity=0.344  Sum_probs=64.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhc--ccc------CCCcEEEEecCCccccccCCCCE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVG--HIN------TRSEVAGYMGNDQLGQALEDSDV   99 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~--~~~------~~~~v~~~~~t~d~~~a~~~aDi   99 (300)
                      ||||+|||+ |.+|+.++..|+..++  ++.++|+++.......-.  +..      .+..+..   +++.+++++++|+
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~   74 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA---TTDLAEALADADL   74 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE---eCCHHHHHhCCCE
Confidence            689999995 9999999999999887  899999864322111100  000      0112222   2455567899999


Q ss_pred             EEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCc
Q 022263          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN  149 (300)
Q Consensus       100 VIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d  149 (300)
                      ||++...                ..+.++.+.+..+ .|+.+++..+|.++
T Consensus        75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~  109 (325)
T PRK00094         75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE  109 (325)
T ss_pred             EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence            9998531                1234455555555 35777887877654

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=98.03  E-value=7.2e-05  Score=70.35  Aligned_cols=171  Identities=15%  Similarity=0.074  Sum_probs=96.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec----CCccccccC--CCCEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALE--DSDVVI  101 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~a~~--~aDiVI  101 (300)
                      |+||.|+||+|++|++++..|...+. ..++++|.....+....+.+......+....+    ..+++++++  +.|+||
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi   79 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM   79 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence            46899999999999999999998875 24667776432222122221100011221111    122344555  489999


Q ss_pred             EcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhC-------CC-eEEEEecCCCc------ccHHHHHHHHHHhCCC
Q 022263          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYC-------PN-AIVNMISNPVN------STVPIAAEVFKKAGTY  165 (300)
Q Consensus       102 i~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~-------p~-a~viv~tNP~d------~~~~i~~~~~~~~~~~  165 (300)
                      ++||.....  .......+..|+.....+++.+.++.       +. ..++.+|...-      ...+ ++|   ... .
T Consensus        80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~-~~E---~~~-~  154 (355)
T PRK10217         80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDF-FTE---TTP-Y  154 (355)
T ss_pred             ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCC-cCC---CCC-C
Confidence            999864321  11234567788988888998887642       12 24444443210      0000 011   111 3


Q ss_pred             CCCcEEEeeehhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263          166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       166 ~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                      .+...+|.+.+...++...+++..+++..-++ ..++|.+
T Consensus       155 ~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~  194 (355)
T PRK10217        155 APSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPY  194 (355)
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCC
Confidence            34455666666666666667788887766665 4577865

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.02  E-value=4.8e-05  Score=66.57  Aligned_cols=97  Identities=21%  Similarity=0.285  Sum_probs=63.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      ||+++|+| +|++|+.++..+...++  |+.+-..+..+.....-...  ...++.   . ..++|.+.+|+||++.-  
T Consensus         1 m~~~~i~G-tGniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l--~~~i~~---~-~~~dA~~~aDVVvLAVP--   69 (211)
T COG2085           1 MMIIAIIG-TGNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAAL--GPLITG---G-SNEDAAALADVVVLAVP--   69 (211)
T ss_pred             CcEEEEec-cChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhh--cccccc---C-ChHHHHhcCCEEEEecc--
Confidence            68999999 59999999999999998  88887665432221111111  112332   2 33589999999999853  


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                                +.....    +.+.+++.-.+-++|-.|||.+
T Consensus        70 ----------~~a~~~----v~~~l~~~~~~KIvID~tnp~~   97 (211)
T COG2085          70 ----------FEAIPD----VLAELRDALGGKIVIDATNPIE   97 (211)
T ss_pred             ----------HHHHHh----HHHHHHHHhCCeEEEecCCCcc
Confidence                      233344    4444444334678888999964

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.01  E-value=4.1e-05  Score=73.63  Aligned_cols=110  Identities=19%  Similarity=0.244  Sum_probs=66.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC------------CCcEEEEecCCccccccCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT------------RSEVAGYMGNDQLGQALED   96 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~------------~~~v~~~~~t~d~~~a~~~   96 (300)
                      |||+|||+ |.||..+|..++. ++  +++.+|+++.+-.  .++....            ....+. ..+++..++.++
T Consensus         1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~kv~--~l~~g~~~~~e~~l~~~l~~~~~~l-~~t~~~~~~~~~   73 (388)
T PRK15057          1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSRVA--MLNDRISPIVDKEIQQFLQSDKIHF-NATLDKNEAYRD   73 (388)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHHHH--HHHcCCCCCCCcCHHHHHHhCCCcE-EEecchhhhhcC
Confidence            69999995 9999999987775 66  8999999753211  1111100            011121 123455677899


Q ss_pred             CCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe-cCCCcc
Q 022263           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNS  150 (300)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~-tNP~d~  150 (300)
                      ||+||++...|......     ..+...+++.++.|.+..|+.++|+- |-|..+
T Consensus        74 ad~vii~Vpt~~~~k~~-----~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgt  123 (388)
T PRK15057         74 ADYVIIATPTDYDPKTN-----YFNTSSVESVIKDVVEINPYAVMVIKSTVPVGF  123 (388)
T ss_pred             CCEEEEeCCCCCccCCC-----CcChHHHHHHHHHHHhcCCCCEEEEeeecCCch
Confidence            99999998766322111     23445556666666654555555433 567764

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=97.99  E-value=4.2e-05  Score=70.62  Aligned_cols=111  Identities=17%  Similarity=0.144  Sum_probs=71.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCccccccCCCCEEEEcCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      |||.|+||+|++|++++..|...+.  +|+.+|.+.....  ++.+... ..+.. .....++.++++++|+||++++..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~-~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~   75 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDRR--NLEGLDV-EIVEGDLRDPASLRKAVAGCRALFHVAADY   75 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCcccc--ccccCCc-eEEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence            5899999999999999999999887  8999998543211  1111110 01111 111123456788999999998754


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      .....+..+....|+.....+++.+.+.+-. .+|.+|
T Consensus        76 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  112 (328)
T TIGR03466        76 RLWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTS  112 (328)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence            2223344566778888888899988876533 344444

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=97.98  E-value=9e-05  Score=68.51  Aligned_cols=105  Identities=12%  Similarity=0.089  Sum_probs=68.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhcccc-CCCcEEEEec----CCccccccCCCCEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHIN-TRSEVAGYMG----NDQLGQALEDSDVVII  102 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~~-~~~~v~~~~~----t~d~~~a~~~aDiVIi  102 (300)
                      ++|.|+||+|++|++++..|...|+  +|+.++.+.... ....+.... ....+..+.+    ...+.++++++|+||+
T Consensus         5 ~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          5 KVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            6899999999999999999999887  888887754321 111121110 0112222211    1235567889999999


Q ss_pred             cCCCCCCC-CCcchhhhhhhHHHHHHHHHHHHhh
Q 022263          103 PAGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKY  135 (300)
Q Consensus       103 ~ag~~~~~-g~~r~dl~~~N~~i~~~i~~~i~~~  135 (300)
                      +|+..... .....+.+..|+.....+.+.+.+.
T Consensus        83 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~  116 (322)
T PLN02662         83 TASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKV  116 (322)
T ss_pred             eCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence            99854221 1122356778999999999988776

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=97.98  E-value=5e-05  Score=71.38  Aligned_cols=110  Identities=15%  Similarity=0.191  Sum_probs=69.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhC-CCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-----CccccccCCCCEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-----DQLGQALEDSDVVI  101 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~~a~~~aDiVI  101 (300)
                      ||||.|+||+|++|++++..|... +.  +|+.+|.....  ..++...   ..+..+.++     ..+.++++++|+||
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~~--~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi   73 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTDR--LGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVIL   73 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHHH--HHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence            579999999999999999998875 55  89999864321  1112111   123322211     12234568999999


Q ss_pred             EcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       102 i~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ++|+....+  ..+....+..|+.....+++.+++..  ..+|.+|.
T Consensus        74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS  118 (347)
T PRK11908         74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST  118 (347)
T ss_pred             ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEec
Confidence            998753221  22333455667888888888888754  35555543

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=97.97  E-value=5.4e-06  Score=76.31  Aligned_cols=119  Identities=21%  Similarity=0.243  Sum_probs=71.3

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEE----EecC----CccccccC--CCC
Q 022263           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAG----YMGN----DQLGQALE--DSD   98 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~----~~~t----~d~~~a~~--~aD   98 (300)
                      |.|+||+|++|+.++..|+..+. .+|+++|.++.  .....++........++.    +.++    ..+..+++  +.|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence            68999999999999999998765 58999999763  223334421111111211    1111    12456677  999


Q ss_pred             EEEEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe----cCCCcc
Q 022263           99 VVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI----SNPVNS  150 (300)
Q Consensus        99 iVIi~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~----tNP~d~  150 (300)
                      +|+++|....-|-  .+-.+.+..|+--.+.+++...+++-+-++.+-    .||.++
T Consensus        80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptnv  137 (293)
T PF02719_consen   80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNV  137 (293)
T ss_dssp             EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SH
T ss_pred             EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcH
Confidence            9999998643222  234566788999999999999998877766665    467773

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PLN02650 dihydroflavonol-4-reductase

Probab=97.95  E-value=0.00013  Score=68.79  Aligned_cols=116  Identities=13%  Similarity=0.063  Sum_probs=72.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhccc-cCCCcEEEEec----CCccccccCCCCEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHI-NTRSEVAGYMG----NDQLGQALEDSDVVI  101 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~-~~~~~v~~~~~----t~d~~~a~~~aDiVI  101 (300)
                      .++|.|+||+|++|++++..|+..+.  +|++++.+.... ...++... .....+..+.+    ...+.++++++|+||
T Consensus         5 ~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi   82 (351)
T PLN02650          5 KETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF   82 (351)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence            35899999999999999999999887  888887754221 11122110 00011222211    123456788999999


Q ss_pred             EcCCCCCCCCCc-chhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          102 IPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       102 i~ag~~~~~g~~-r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ++|+.......+ ..+.+..|+.....+.+.+.+.+.-..+|.+|
T Consensus        83 H~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~S  127 (351)
T PLN02650         83 HVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTS  127 (351)
T ss_pred             EeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEec
Confidence            999753211112 23567789999999999988765323455554

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=97.95  E-value=0.00011  Score=68.98  Aligned_cols=170  Identities=15%  Similarity=0.107  Sum_probs=95.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec----CCccccccC--CCCEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALE--DSDVVII  102 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~a~~--~aDiVIi  102 (300)
                      |||.|+||+|++|++++..|...+. ..++.+|.....+....+.+......+..+.+    ..++.++++  ++|+||+
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH   79 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence            6899999999999999999988775 24666775321111111111100111221111    112344554  4899999


Q ss_pred             cCCCCCC--CCCcchhhhhhhHHHHHHHHHHHHhhC-------CC-eEEEEecCCCcccH--------------HHHHHH
Q 022263          103 PAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYC-------PN-AIVNMISNPVNSTV--------------PIAAEV  158 (300)
Q Consensus       103 ~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~-------p~-a~viv~tNP~d~~~--------------~i~~~~  158 (300)
                      +|+....  +.....+.+..|+.....+++.+.++.       .. ..+|.+|-. .+..              +.++| 
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~-~vyg~~~~~~~~~~~~~~~~~~E-  157 (352)
T PRK10084         80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTD-EVYGDLPHPDEVENSEELPLFTE-  157 (352)
T ss_pred             CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecch-hhcCCCCccccccccccCCCccc-
Confidence            9986421  112235678889999999999988751       11 234444321 1000              00011 


Q ss_pred             HHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       159 ~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                        .. .+.|....|.+.....++-..+++..+++..-++ ..|.|.+
T Consensus       158 --~~-~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~  201 (352)
T PRK10084        158 --TT-AYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPY  201 (352)
T ss_pred             --cC-CCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCC
Confidence              11 1345566777766666666666777887766665 3477876

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=97.93  E-value=7.6e-05  Score=73.73  Aligned_cols=210  Identities=19%  Similarity=0.254  Sum_probs=127.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEecC----CccccccCC--CCEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN----DQLGQALED--SDVV  100 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~--aDiV  100 (300)
                      ..|.|+||+|++|+.+...++..+. ++|+++|.++.  .....++.+.....+++.+.++    ...+.++++  .|+|
T Consensus       251 K~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~V  329 (588)
T COG1086         251 KTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIV  329 (588)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceE
Confidence            4899999999999999998888754 59999999763  2233445443212233333221    235677888  9999


Q ss_pred             EEcCCCCCCCCCc--chhhhhhhHHHHHHHHHHHHhhCCCeEEEEec----CCCcccHHHHHHHHHHhCCCCCCcEEEee
Q 022263          101 IIPAGVPRKPGMT--RDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS----NPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (300)
Q Consensus       101 Ii~ag~~~~~g~~--r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t----NP~d~~~~i~~~~~~~~~~~~~~kviG~t  174 (300)
                      +++|....-|-++  -.+-+..|+--.+++++...+++=+.++++-|    ||.|+                    .|.|
T Consensus       330 fHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNv--------------------mGaT  389 (588)
T COG1086         330 FHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNV--------------------MGAT  389 (588)
T ss_pred             EEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchH--------------------hhHH
Confidence            9999876555443  34667889999999999999888777766653    66663                    3333


Q ss_pred             ehhHHHHHHHHHHHcC---CCCCce-EEEEEecCCCCceeeccCcC-cCCCC--CCHHH-------HHHHHHHHhchh--
Q 022263          175 TLDVVRAKTFYAGKAN---VNVAEV-NVPVVGGHAGITILPLFSQA-TPKAN--LADED-------IKALTKRTQDGG--  238 (300)
Q Consensus       175 ~Lds~R~~~~la~~l~---v~~~~V-~~~v~G~h~g~t~vp~~S~~-~~~~~--~~~~~-------~~~i~~~v~~~g--  238 (300)
                      ..-...+-...++..+   ....-| .+-|+|.. | |.+|+|..- ..+++  +++.+       +.|-.+-|-+++  
T Consensus       390 Kr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSr-G-SViPlFk~QI~~GgplTvTdp~mtRyfMTI~EAv~LVlqA~a~  467 (588)
T COG1086         390 KRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR-G-SVIPLFKKQIAEGGPLTVTDPDMTRFFMTIPEAVQLVLQAGAI  467 (588)
T ss_pred             HHHHHHHHHHHhhccCCCCcEEEEEEecceecCC-C-CCHHHHHHHHHcCCCccccCCCceeEEEEHHHHHHHHHHHHhh
Confidence            2112222222222221   111223 35699988 4 799998542 22221  22221       234444444444  


Q ss_pred             ---hhhhhhccCCCCCccchHHHHHHHHHHHHc
Q 022263          239 ---TEVVEAKAGKGSATLSMAYAGAIFADACLK  268 (300)
Q Consensus       239 ---~~i~~~~~gkg~t~~~~A~a~~~~i~ai~~  268 (300)
                         .||+-+       -+|+..-+.++.++++.
T Consensus       468 ~~gGeifvl-------dMGepvkI~dLAk~mi~  493 (588)
T COG1086         468 AKGGEIFVL-------DMGEPVKIIDLAKAMIE  493 (588)
T ss_pred             cCCCcEEEE-------cCCCCeEHHHHHHHHHH
Confidence               333333       35777888899988855

>PLN02214 cinnamoyl-CoA reductase

Probab=97.93  E-value=0.00013  Score=68.76  Aligned_cols=111  Identities=14%  Similarity=0.044  Sum_probs=72.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH---HHHhccccCCCcEEEEec----CCccccccCCCCE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV---AADVGHINTRSEVAGYMG----NDQLGQALEDSDV   99 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~---~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aDi   99 (300)
                      ++++|.|+||+|++|++++..|+..|.  +|+.+++......   ...+...  ...+..+.+    ..++.++++++|+
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~   84 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG--KERLILCKADLQDYEALKAAIDGCDG   84 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC--CCcEEEEecCcCChHHHHHHHhcCCE
Confidence            456899999999999999999999887  8888877432111   1112111  012222211    1235567899999


Q ss_pred             EEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       100 VIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ||++|+...   ....+.+..|+.-...+.+.+.+.... .+|.+|
T Consensus        85 Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~S  126 (342)
T PLN02214         85 VFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVK-RVVITS  126 (342)
T ss_pred             EEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEec
Confidence            999998542   233456778999999999998876544 344333

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=97.92  E-value=0.00011  Score=69.15  Aligned_cols=172  Identities=15%  Similarity=0.120  Sum_probs=92.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HH-HhccccCCCcEEEEec--C--CccccccCC--CCE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AA-DVGHINTRSEVAGYMG--N--DQLGQALED--SDV   99 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~-dl~~~~~~~~v~~~~~--t--~d~~~a~~~--aDi   99 (300)
                      .++|.|+||+|++|++++..|++.+.  +|+.+|++..... .. .+.. .  ..+..+.+  +  .++.+.+++  .|+
T Consensus         4 ~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~Dl~~~~~~~~~~~~~~~d~   78 (349)
T TIGR02622         4 GKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNL-A--KKIEDHFGDIRDAAKLRKAIAEFKPEI   78 (349)
T ss_pred             CCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhh-c--CCceEEEccCCCHHHHHHHHhhcCCCE
Confidence            36899999999999999999999887  8999987543211 11 1111 0  01111111  1  123344554  599


Q ss_pred             EEEcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehh
Q 022263          100 VIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLD  177 (300)
Q Consensus       100 VIi~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Ld  177 (300)
                      ||++|+.+...  ..+....+..|+.....+.+.+.+.+....+|.+|...-.-..-...-.......++...+|.+..-
T Consensus        79 vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~p~~~Y~~sK~~  158 (349)
T TIGR02622        79 VFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPLGGHDPYSSSKAC  158 (349)
T ss_pred             EEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCCCCCCcchhHHHH
Confidence            99999854221  1123456678888889999988766533355555542100000000000001113345566766544


Q ss_pred             HHHHHHHHHHHc-------CCCCCceE-EEEEecC
Q 022263          178 VVRAKTFYAGKA-------NVNVAEVN-VPVVGGH  204 (300)
Q Consensus       178 s~R~~~~la~~l-------~v~~~~V~-~~v~G~h  204 (300)
                      ..++...+++.+       +++...++ ..+.|..
T Consensus       159 ~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~  193 (349)
T TIGR02622       159 AELVIASYRSSFFGVANFHGIKIASARAGNVIGGG  193 (349)
T ss_pred             HHHHHHHHHHHhhcccccCCCcEEEEccCcccCCC
Confidence            445555555544       45444443 3466653

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=97.91  E-value=4.6e-05  Score=72.72  Aligned_cols=169  Identities=11%  Similarity=0.026  Sum_probs=93.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec--C--CccccccCCCCEEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG--N--DQLGQALEDSDVVII  102 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--t--~d~~~a~~~aDiVIi  102 (300)
                      ..|||.|+||+|++|++++..|...|+  +|+.+|+.... .   +.....  ......+  +  .++.++++++|+||+
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~-~---~~~~~~--~~~~~~~Dl~d~~~~~~~~~~~D~Vih   91 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNE-H---MSEDMF--CHEFHLVDLRVMENCLKVTKGVDHVFN   91 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccc-c---cccccc--cceEEECCCCCHHHHHHHHhCCCEEEE
Confidence            347999999999999999999999887  89999974321 0   000000  0111110  1  123345689999999


Q ss_pred             cCCCCCCCC---CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCccc-HHHHH---HHHHHhC-CCCCCcEEEee
Q 022263          103 PAGVPRKPG---MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST-VPIAA---EVFKKAG-TYNEKKLFGVT  174 (300)
Q Consensus       103 ~ag~~~~~g---~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~-~~i~~---~~~~~~~-~~~~~kviG~t  174 (300)
                      +|+.....+   ......+..|......+++.+++...+.+ |.+|...-.- .....   .+..... ...|...+|.+
T Consensus        92 ~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~-V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Yg~s  170 (370)
T PLN02695         92 LAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRF-FYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLE  170 (370)
T ss_pred             cccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEE-EEeCchhhcCCccccCcCCCcCcccCCCCCCCCHHHHH
Confidence            987532111   12233467899999999999887765544 3343211000 00000   0000000 12344455555


Q ss_pred             ehhHHHHHHHHHHHcCCCCCceEE-EEEecC
Q 022263          175 TLDVVRAKTFYAGKANVNVAEVNV-PVVGGH  204 (300)
Q Consensus       175 ~Lds~R~~~~la~~l~v~~~~V~~-~v~G~h  204 (300)
                      .....++....++..+++..-++. .++|.+
T Consensus       171 K~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~  201 (370)
T PLN02695        171 KLATEELCKHYTKDFGIECRIGRFHNIYGPF  201 (370)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEECCccCCC
Confidence            554555544456667777666653 377865

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.91  E-value=8.6e-05  Score=70.79  Aligned_cols=80  Identities=18%  Similarity=0.316  Sum_probs=55.0

Q ss_pred             CCCCCCCCceEEEEcCCCChHHHHHHHHHhCCC-----CCEEEEEecCCc---ccHHHHhcc--cc--------CCCcEE
Q 022263           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIANT---PGVAADVGH--IN--------TRSEVA   82 (300)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~-----~~el~L~D~~~~---~g~~~dl~~--~~--------~~~~v~   82 (300)
                      |-+-....+||+|||+ |..|.++|..|...+.     ..++.||.+++.   +..+.++++  .+        .+..+.
T Consensus         4 ~~~~~~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~   82 (365)
T PTZ00345          4 FQKLRCGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIV   82 (365)
T ss_pred             hhhcccCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceE
Confidence            3444456789999995 9999999999998762     138999988653   123334442  21        223344


Q ss_pred             EEecCCccccccCCCCEEEEcC
Q 022263           83 GYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        83 ~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      .   ++|+.+++++||+||++.
T Consensus        83 ~---tsdl~eav~~aDiIvlAV  101 (365)
T PTZ00345         83 A---VSDLKEAVEDADLLIFVI  101 (365)
T ss_pred             E---ecCHHHHHhcCCEEEEEc
Confidence            3   467778999999999975

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=97.90  E-value=0.0001  Score=75.56  Aligned_cols=169  Identities=14%  Similarity=0.081  Sum_probs=98.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhC-CCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc----cccccCCCCE
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ----LGQALEDSDV   99 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d----~~~a~~~aDi   99 (300)
                      .++|||.|+||+|++|++++..|... ++  +|+.+|.......  ++...   ..+..+.+. .|    ++++++++|+
T Consensus       313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~~--~~~~~---~~~~~~~gDl~d~~~~l~~~l~~~D~  385 (660)
T PRK08125        313 KRRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAIS--RFLGH---PRFHFVEGDISIHSEWIEYHIKKCDV  385 (660)
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhhh--hhcCC---CceEEEeccccCcHHHHHHHhcCCCE
Confidence            35679999999999999999999874 56  8999997542111  11110   122222111 11    2456789999


Q ss_pred             EEEcCCCCCC--CCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccH----HHHHHHHHH---hCCCCCCcE
Q 022263          100 VIIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV----PIAAEVFKK---AGTYNEKKL  170 (300)
Q Consensus       100 VIi~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~----~i~~~~~~~---~~~~~~~kv  170 (300)
                      ||++|+....  ......+.+..|+....++.+.+.++. . .+|.+|.. .+..    ....|-...   .+.-++...
T Consensus       386 ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~SS~-~vyg~~~~~~~~E~~~~~~~~p~~~p~s~  462 (660)
T PRK08125        386 VLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K-RIIFPSTS-EVYGMCTDKYFDEDTSNLIVGPINKQRWI  462 (660)
T ss_pred             EEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C-eEEEEcch-hhcCCCCCCCcCccccccccCCCCCCccc
Confidence            9999885431  222345667889999999999998875 2 44444431 1000    001110000   000012235


Q ss_pred             EEeeehhHHHHHHHHHHHcCCCCCceEEE-EEecC
Q 022263          171 FGVTTLDVVRAKTFYAGKANVNVAEVNVP-VVGGH  204 (300)
Q Consensus       171 iG~t~Lds~R~~~~la~~l~v~~~~V~~~-v~G~h  204 (300)
                      .|.+.+-..++-...++..+++..-++.. |+|.+
T Consensus       463 Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~  497 (660)
T PRK08125        463 YSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR  497 (660)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence            67765555566566677778877777644 77865

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=97.90  E-value=6.9e-05  Score=68.62  Aligned_cols=165  Identities=17%  Similarity=0.112  Sum_probs=96.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC-CCcEEEEecCCccccccCCC-CEEEEcCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-RSEVAGYMGNDQLGQALEDS-DVVIIPAGV  106 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~~a~~~a-DiVIi~ag~  106 (300)
                      |+|.|+||+|++|++++..|.+.|+  +|+.+|.........+ .+... ...+..   .....+.+++. |.||++|+.
T Consensus         1 ~~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~~~~~d~~~---~~~~~~~~~~~~d~vih~aa~   74 (314)
T COG0451           1 MRILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVEFVVLDLTD---RDLVDELAKGVPDAVIHLAAQ   74 (314)
T ss_pred             CeEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccceeeecccc---hHHHHHHHhcCCCEEEEcccc
Confidence            3599999999999999999999887  9999998543222111 11100 000110   01223455666 999999987


Q ss_pred             CCCCCCcc---hhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccH-----HHHHHHHHHhCCCCCCcEEEeeehhH
Q 022263          107 PRKPGMTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV-----PIAAEVFKKAGTYNEKKLFGVTTLDV  178 (300)
Q Consensus       107 ~~~~g~~r---~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~-----~i~~~~~~~~~~~~~~kviG~t~Lds  178 (300)
                      ...++..+   .++...|+...+++++...+ +.-..++..| .....-     ..+.|-.  .. ..|....|.+.+..
T Consensus        75 ~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~-~~~~~~v~~s-s~~~~~~~~~~~~~~E~~--~~-~~p~~~Yg~sK~~~  149 (314)
T COG0451          75 SSVPDSNASDPAEFLDVNVDGTLNLLEAARA-AGVKRFVFAS-SVSVVYGDPPPLPIDEDL--GP-PRPLNPYGVSKLAA  149 (314)
T ss_pred             CchhhhhhhCHHHHHHHHHHHHHHHHHHHHH-cCCCeEEEeC-CCceECCCCCCCCccccc--CC-CCCCCHHHHHHHHH
Confidence            65554433   24788999999999999998 3333333332 221100     0111110  11 12222356665555


Q ss_pred             HHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263          179 VRAKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       179 ~R~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                      .+.-...++..+++..-++ ..++|.+
T Consensus       150 E~~~~~~~~~~~~~~~ilR~~~vyGp~  176 (314)
T COG0451         150 EQLLRAYARLYGLPVVILRPFNVYGPG  176 (314)
T ss_pred             HHHHHHHHHHhCCCeEEEeeeeeeCCC
Confidence            5555555556678888887 4588866

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.90  E-value=7.4e-05  Score=69.55  Aligned_cols=79  Identities=24%  Similarity=0.376  Sum_probs=58.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      +.|||+|||+ |.+|.+++..|...++  +|.++|++..                      .++.++++++|+||++.- 
T Consensus         3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~vp-   56 (308)
T PRK14619          3 QPKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAVS-   56 (308)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEECC-
Confidence            4579999995 9999999999999988  9999998532                      133467789999999842 


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhh--CCCeEEEEecC
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY--CPNAIVNMISN  146 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~--~p~a~viv~tN  146 (300)
                                     ...++++++.+..+  .++.+++..|+
T Consensus        57 ---------------~~~~~~v~~~l~~~~~~~~~ivi~~s~   83 (308)
T PRK14619         57 ---------------MKGVRPVAEQVQALNLPPETIIVTATK   83 (308)
T ss_pred             ---------------hHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence                           12355556666543  45777777776

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.87  E-value=8.9e-05  Score=69.43  Aligned_cols=99  Identities=14%  Similarity=0.352  Sum_probs=63.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhcc--c------cCCCcEEEEecCCcccccc-CCCCE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH--I------NTRSEVAGYMGNDQLGQAL-EDSDV   99 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~--~------~~~~~v~~~~~t~d~~~a~-~~aDi   99 (300)
                      |||+|||| |.+|+.++..|.+.+.  +|.|+++++...+.+.-.+  .      ..+..++.   ++++.+++ .++|+
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~Dl   74 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISV---KSAIDEVLSDNATC   74 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEE---eCCHHHHHhCCCCE
Confidence            68999996 9999999999999886  8999998543222111111  1      01112333   34565666 58999


Q ss_pred             EEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHh-h-CCCeEEEEecCCCc
Q 022263          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-Y-CPNAIVNMISNPVN  149 (300)
Q Consensus       100 VIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~-~-~p~a~viv~tNP~d  149 (300)
                      ||++.-                ..-+.++++.+.. + .++..++..+|-.+
T Consensus        75 iiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~  110 (326)
T PRK14620         75 IILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIE  110 (326)
T ss_pred             EEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence            999852                2334555555654 3 46777777888764

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=97.85  E-value=0.00017  Score=70.04  Aligned_cols=106  Identities=20%  Similarity=0.221  Sum_probs=67.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC----------------CCcEEEEecCCccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLG   91 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~d~~   91 (300)
                      ++||+|||. |.||..+|..|++.|+  +++.+|+++.+-..  ++....                ...+..   ++   
T Consensus         3 ~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~--l~~g~~~~~e~~l~~~l~~~~~~g~l~~---~~---   71 (415)
T PRK11064          3 FETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDT--INRGEIHIVEPDLDMVVKTAVEGGYLRA---TT---   71 (415)
T ss_pred             ccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHH--HHCCCCCcCCCCHHHHHHHHhhcCceee---ec---
Confidence            579999995 9999999999999987  99999997643222  221110                001211   22   


Q ss_pred             cccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEe-cCCCccc
Q 022263           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMI-SNPVNST  151 (300)
Q Consensus        92 ~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~-tNP~d~~  151 (300)
                       ..++||+||++...|.++..      ..+...+.+.++.|.++.+ +.++|+- |.|..+.
T Consensus        72 -~~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt  126 (415)
T PRK11064         72 -TPEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGAT  126 (415)
T ss_pred             -ccccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHH
Confidence             24589999999988754331      2344556666677776654 4555444 5576643

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=97.84  E-value=0.00028  Score=68.71  Aligned_cols=109  Identities=14%  Similarity=0.166  Sum_probs=67.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCC------------CcEEEEecCCcccccc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR------------SEVAGYMGNDQLGQAL   94 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~------------~~v~~~~~t~d~~~a~   94 (300)
                      ++|||+||| .|+||..+|..|+. ++  +++.||+++.+-  ..|+....+            ..+..   +++. +++
T Consensus         5 ~~mkI~vIG-lGyvGlpmA~~la~-~~--~V~g~D~~~~~v--e~l~~G~~~~~e~~~~~l~~~g~l~~---t~~~-~~~   74 (425)
T PRK15182          5 DEVKIAIIG-LGYVGLPLAVEFGK-SR--QVVGFDVNKKRI--LELKNGVDVNLETTEEELREARYLKF---TSEI-EKI   74 (425)
T ss_pred             CCCeEEEEC-cCcchHHHHHHHhc-CC--EEEEEeCCHHHH--HHHHCcCCCCCCCCHHHHHhhCCeeE---EeCH-HHH
Confidence            568999999 59999999999887 45  999999976432  233322110            01222   3444 578


Q ss_pred             CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEE-ecCCCccc
Q 022263           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNM-ISNPVNST  151 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv-~tNP~d~~  151 (300)
                      ++||++|++.+.|.+...      ..+..-+....+.|.++.+ ..++|+ -|-|..+.
T Consensus        75 ~~advvii~Vptp~~~~~------~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt  127 (425)
T PRK15182         75 KECNFYIITVPTPINTYK------QPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCT  127 (425)
T ss_pred             cCCCEEEEEcCCCCCCCC------CcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcch
Confidence            999999999988854321      1233444444555555543 444443 35666643

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.84  E-value=0.0001  Score=69.61  Aligned_cols=99  Identities=19%  Similarity=0.228  Sum_probs=65.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccc--c---------CCCcEEEEecCCcccccc
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--N---------TRSEVAGYMGNDQLGQAL   94 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~--~---------~~~~v~~~~~t~d~~~a~   94 (300)
                      +.+|||+|+|+ |.+|++++..|...+   +++++..++..  ..+++..  .         .+..+..   ++|+.+++
T Consensus         5 ~~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~~--~~~i~~~~~~~~~l~~~~~l~~~i~~---t~d~~~a~   75 (341)
T PRK12439          5 KREPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAET--ADDINDNHRNSRYLGNDVVLSDTLRA---TTDFAEAA   75 (341)
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHHH--HHHHHhcCCCcccCCCCcccCCCeEE---ECCHHHHH
Confidence            46789999996 999999999999877   36777764432  2222211  0         1112222   45777789


Q ss_pred             CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCc
Q 022263           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN  149 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d  149 (300)
                      +++|+||++.-                ...++++++++..+ .++..+|.++|-.+
T Consensus        76 ~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~  115 (341)
T PRK12439         76 NCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLE  115 (341)
T ss_pred             hcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCc
Confidence            99999999852                23456666666655 35777888888766

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.84  E-value=0.00026  Score=65.31  Aligned_cols=115  Identities=10%  Similarity=0.133  Sum_probs=68.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC-----CCcEEE-EecCCccccccCCCCEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-----RSEVAG-YMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~-----~~~v~~-~~~t~d~~~a~~~aDiVIi  102 (300)
                      |||+|+|+ |.+|..++..|...+.  ++.++++ ...-+  .+.+...     ...... ....++.+++.+++|+||+
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r-~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil   74 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVR-PKRAK--ALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL   74 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEec-HHHHH--HHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence            69999996 9999999999999887  8999998 32111  1221110     001100 0012344455689999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG  172 (300)
                      +.-.+                -+.++++.+..+ .++.+++.+.|..+..     +.++.  .+|++++++
T Consensus        75 avk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~-----~~l~~--~~~~~~v~~  122 (305)
T PRK12921         75 AVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQL-----EQLEP--YFGRERVLG  122 (305)
T ss_pred             Eeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChH-----HHHHH--hCCcccEEE
Confidence            85322                134444555554 3577788889998732     12222  266777774

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.83  E-value=0.00017  Score=67.85  Aligned_cols=100  Identities=24%  Similarity=0.276  Sum_probs=62.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC-----CC-cE----EEEecCCccccccCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-----RS-EV----AGYMGNDQLGQALEDS   97 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~-----~~-~v----~~~~~t~d~~~a~~~a   97 (300)
                      +|||+|||+ |.||..++..|...|+  +|.++|+++.. .  .+.....     .. ..    ..+..+++. ++++++
T Consensus         2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~-~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   74 (341)
T PRK08229          2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIG-D--ELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATA   74 (341)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHH-H--HHHhcCceeecCCCcceecccceeEeccCh-hhccCC
Confidence            579999995 9999999999999887  89999985321 1  1111100     00 00    001113444 568999


Q ss_pred             CEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCcc
Q 022263           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNS  150 (300)
Q Consensus        98 DiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~  150 (300)
                      |+||++...+.                ..++++.+... .++.+++..+|..+.
T Consensus        75 D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~  112 (341)
T PRK08229         75 DLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRN  112 (341)
T ss_pred             CEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence            99999863221                12334455554 457777778898773

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.83  E-value=0.00021  Score=60.56  Aligned_cols=93  Identities=27%  Similarity=0.314  Sum_probs=65.3

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC----CccccccCCCCEEEEcCCC
Q 022263           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aDiVIi~ag~  106 (300)
                      |+|+||+|++|+.++..|.+.+.  +|+++-+++.+..  +      ...++.+.++    +++.++++++|.||.++|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~~~--~------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSKAE--D------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGGHH--H------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchhcc--c------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            78999999999999999999996  8999877644222  2      1133333221    2346789999999999976


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +.+           .....+.+.+.+++.+.. .++++|
T Consensus        71 ~~~-----------~~~~~~~~~~a~~~~~~~-~~v~~s   97 (183)
T PF13460_consen   71 PPK-----------DVDAAKNIIEAAKKAGVK-RVVYLS   97 (183)
T ss_dssp             TTT-----------HHHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred             hcc-----------cccccccccccccccccc-cceeee
Confidence            533           267788888888887644 344443

...

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=97.83  E-value=0.00017  Score=67.37  Aligned_cols=113  Identities=15%  Similarity=0.215  Sum_probs=73.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec----CCccccccCCCCEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG----NDQLGQALEDSDVVI  101 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aDiVI  101 (300)
                      .++|.|+||+|++|++++..|+..+...+|+++|.+.....  ..++..    ..+..+.+    ..++.+++++.|+||
T Consensus         4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~Vi   79 (324)
T TIGR03589         4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYVV   79 (324)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence            46899999999999999999988752237899987543211  111211    12222211    123456678999999


Q ss_pred             EcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       102 i~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ++||....+  ..+..+.+..|+.....+.+.+.+.+.. .+|.+|
T Consensus        80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S  124 (324)
T TIGR03589        80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS  124 (324)
T ss_pred             ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            999864322  2233467788999999999998876543 444454

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.82  E-value=0.00011  Score=68.93  Aligned_cols=72  Identities=24%  Similarity=0.294  Sum_probs=49.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccc------c--CCCcEEEEecCCccccccCCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI------N--TRSEVAGYMGNDQLGQALEDSD   98 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~------~--~~~~v~~~~~t~d~~~a~~~aD   98 (300)
                      .+|||+|||+ |.+|..++..|+..++  +|.+||+++...+...-.+.      .  .+..+..   ++++.++++++|
T Consensus         3 ~~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~---~~~~~e~~~~aD   76 (328)
T PRK14618          3 HGMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELYP---TADPEEALAGAD   76 (328)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEE---eCCHHHHHcCCC
Confidence            3689999995 9999999999999887  89999986432221111110      0  0111222   346667789999


Q ss_pred             EEEEcC
Q 022263           99 VVIIPA  104 (300)
Q Consensus        99 iVIi~a  104 (300)
                      +||++.
T Consensus        77 ~Vi~~v   82 (328)
T PRK14618         77 FAVVAV   82 (328)
T ss_pred             EEEEEC
Confidence            999985

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.81  E-value=0.00035  Score=64.28  Aligned_cols=100  Identities=20%  Similarity=0.247  Sum_probs=61.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC---CCcEEE-EecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT---RSEVAG-YMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~---~~~v~~-~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      |||+|+|+ |.+|..++..|.+.+.  ++.++|.+...-.  .+.....   ...... ...+++.++ .+++|+||++.
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~   74 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLD--ALNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAV   74 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHHcCCcccCCceeecccCCCChhH-cCCCCEEEEec
Confidence            68999996 9999999999999886  8999998532111  1111110   001110 011234434 48999999985


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCcc
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNS  150 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~  150 (300)
                      -..                -..++++.+..+ .++..++...|..+.
T Consensus        75 k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~  105 (304)
T PRK06522         75 KAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGH  105 (304)
T ss_pred             ccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCc
Confidence            321                123444445443 457788889999874

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=97.79  E-value=0.00014  Score=65.87  Aligned_cols=99  Identities=19%  Similarity=0.225  Sum_probs=66.8

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCCCC
Q 022263           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKP  110 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~~~  110 (300)
                      |.|+||+|++|++++..|...+.  +|+.++++......  +...    .+....+ ....++++++|+||++|+.+...
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~~----~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~   71 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGAN--TKWE----GYKPWAP-LAESEALEGADAVINLAGEPIAD   71 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCc--ccce----eeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence            57999999999999999998887  89999985432110  0000    1111111 12346789999999999875432


Q ss_pred             CC----cchhhhhhhHHHHHHHHHHHHhhCCC
Q 022263          111 GM----TRDDLFNINAGIVKDLCSAIAKYCPN  138 (300)
Q Consensus       111 g~----~r~dl~~~N~~i~~~i~~~i~~~~p~  138 (300)
                      +.    ....+...|+...+.+.+.+.+....
T Consensus        72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~  103 (292)
T TIGR01777        72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQK  103 (292)
T ss_pred             ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence            21    22345677999999999999887643

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=97.79  E-value=0.00016  Score=66.45  Aligned_cols=164  Identities=18%  Similarity=0.119  Sum_probs=104.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc-ccHHHHhccccCCCcEEE-EecCCcccccc--CCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAG-YMGNDQLGQAL--EDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~--~~aDiVIi~a  104 (300)
                      |+|.|+||+|+|||+.+..|++.|+  +++.+|.-.. ..++.+-....   .+.+ .....-+.+.|  ...|.||+.|
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~~~---f~~gDi~D~~~L~~vf~~~~idaViHFA   75 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQFK---FYEGDLLDRALLTAVFEENKIDAVVHFA   75 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhccCc---eEEeccccHHHHHHHHHhcCCCEEEECc
Confidence            6899999999999999999999998  9999998431 11111111000   1111 00000122222  4789999998


Q ss_pred             CCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEE-----ecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehh
Q 022263          105 GVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-----ISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLD  177 (300)
Q Consensus       105 g~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv-----~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Ld  177 (300)
                      |...-+.  +.-+.++..|+--...+.+.|.+.+.+-++.-     +.+|...  || +|   .. ...|.+-.|-|.|-
T Consensus        76 a~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~--PI-~E---~~-~~~p~NPYG~sKlm  148 (329)
T COG1087          76 ASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTS--PI-SE---TS-PLAPINPYGRSKLM  148 (329)
T ss_pred             cccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCc--cc-CC---CC-CCCCCCcchhHHHH
Confidence            8532111  23456788999999999999999997766542     2345441  22 22   22 25577889999888


Q ss_pred             HHHHHHHHHHHcCCCCCceEEE-EEecC
Q 022263          178 VVRAKTFYAGKANVNVAEVNVP-VVGGH  204 (300)
Q Consensus       178 s~R~~~~la~~l~v~~~~V~~~-v~G~h  204 (300)
                      ..++.+.+++..+.+..-.+-+ +.|.|
T Consensus       149 ~E~iL~d~~~a~~~~~v~LRYFN~aGA~  176 (329)
T COG1087         149 SEEILRDAAKANPFKVVILRYFNVAGAC  176 (329)
T ss_pred             HHHHHHHHHHhCCCcEEEEEecccccCC
Confidence            8888888988888655444433 66655

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=97.76  E-value=0.00036  Score=65.81  Aligned_cols=173  Identities=14%  Similarity=0.090  Sum_probs=91.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEecC----CccccccCCCCEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGN----DQLGQALEDSDVV  100 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aDiV  100 (300)
                      ..|||.|+||+|++|++++..|++.|.  +|++++.+.....  ..++..   ...+..+.+.    .++.+++++.|+|
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~V   83 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGV   83 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence            557999999999999999999999887  8888876532211  111211   1123322211    1244567889999


Q ss_pred             EEcCCCCCCC---C-Ccchh-----hhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccH--------HHHHHH----H
Q 022263          101 IIPAGVPRKP---G-MTRDD-----LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV--------PIAAEV----F  159 (300)
Q Consensus       101 Ii~ag~~~~~---g-~~r~d-----l~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~--------~i~~~~----~  159 (300)
                      |++|+.....   . .+..+     .+..|+.....+.+.+.+...-..+|++|.-.-...        ..+.|-    .
T Consensus        84 ih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~  163 (353)
T PLN02896         84 FHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPI  163 (353)
T ss_pred             EECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcH
Confidence            9999864211   1 11122     223344667777887776532224554443110000        000110    0


Q ss_pred             HH-hCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263          160 KK-AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       160 ~~-~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                      .. ....++....|.+.+...++....++..+++..-++ ..|+|.+
T Consensus       164 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~  210 (353)
T PLN02896        164 DHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPF  210 (353)
T ss_pred             HHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCC
Confidence            00 000112225566655556666666777777665555 3467764

>PLN02778 3,5-epimerase/4-reductase

Probab=97.75  E-value=0.00036  Score=64.56  Aligned_cols=92  Identities=15%  Similarity=0.127  Sum_probs=62.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      ..|||.|+||+|++|++++..|...+.  ++++...+        +.+..   .+.     .++.+  .+.|+||++|+.
T Consensus         8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~--------~~~~~---~v~-----~~l~~--~~~D~ViH~Aa~   67 (298)
T PLN02778          8 ATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGR--------LENRA---SLE-----ADIDA--VKPTHVFNAAGV   67 (298)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCc--------cCCHH---HHH-----HHHHh--cCCCEEEECCcc
Confidence            347999999999999999999998887  77654221        11100   000     01111  268999999986


Q ss_pred             CCCCC-----CcchhhhhhhHHHHHHHHHHHHhhCCC
Q 022263          107 PRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPN  138 (300)
Q Consensus       107 ~~~~g-----~~r~dl~~~N~~i~~~i~~~i~~~~p~  138 (300)
                      ...+.     ....+.+..|......+++.+++.+..
T Consensus        68 ~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~  104 (298)
T PLN02778         68 TGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV  104 (298)
T ss_pred             cCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            53322     234567788999999999999887543

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=97.73  E-value=0.00012  Score=66.72  Aligned_cols=112  Identities=14%  Similarity=0.070  Sum_probs=68.0

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCC--cEEEEecCCccccccCCCCEEEE
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~--~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      ..+.++|+|+||+|||||+++-.|+..++  +|...|..... ....++|.....  .+....   .....++.+|-|+.
T Consensus        24 p~~~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~ftg-~k~n~~~~~~~~~fel~~hd---v~~pl~~evD~Iyh   97 (350)
T KOG1429|consen   24 PSQNLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYFTG-RKENLEHWIGHPNFELIRHD---VVEPLLKEVDQIYH   97 (350)
T ss_pred             CCCCcEEEEecCcchHHHHHHHHHHhcCC--eEEEEeccccc-chhhcchhccCcceeEEEee---chhHHHHHhhhhhh
Confidence            34568999999999999999999999886  99999985421 112234433221  222221   12356899999999


Q ss_pred             cCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Q 022263          103 PAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (300)
Q Consensus       103 ~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~  144 (300)
                      .|.....++  .+-.+.+..|.--........++.+  +.++.+
T Consensus        98 LAapasp~~y~~npvktIktN~igtln~lglakrv~--aR~l~a  139 (350)
T KOG1429|consen   98 LAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARFLLA  139 (350)
T ss_pred             hccCCCCcccccCccceeeecchhhHHHHHHHHHhC--ceEEEe
Confidence            987543333  2334445555444444444444433  555544

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=97.71  E-value=9.9e-05  Score=68.18  Aligned_cols=99  Identities=18%  Similarity=0.196  Sum_probs=63.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC--CCCEEEEcCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~--~aDiVIi~ag~  106 (300)
                      |||.|+||+|++|++++..|...+   +++.+|.... ....|+.+.            ..+.++++  +.|+||++|+.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~-~~~~Dl~d~------------~~~~~~~~~~~~D~Vih~Aa~   64 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST-DYCGDFSNP------------EGVAETVRKIRPDVIVNAAAH   64 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc-cccCCCCCH------------HHHHHHHHhcCCCEEEECCcc
Confidence            689999999999999999888776   4777776321 011122221            12234455  58999999986


Q ss_pred             CCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          107 PRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       107 ~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      .....  .........|+.....+++.+.+.+  ..+|.+|
T Consensus        65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g--~~~v~~S  103 (299)
T PRK09987         65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVG--AWVVHYS  103 (299)
T ss_pred             CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEc
Confidence            42211  1223334679999999999998875  3455443

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=97.71  E-value=0.00067  Score=62.97  Aligned_cols=171  Identities=13%  Similarity=0.092  Sum_probs=93.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HHHhccc-cCCCcEEEEec----CCccccccCCCCEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGHI-NTRSEVAGYMG----NDQLGQALEDSDVVI  101 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~dl~~~-~~~~~v~~~~~----t~d~~~a~~~aDiVI  101 (300)
                      .++|.|+||+|++|++++..|+..|.  +|++.+++..... ...+... .....+..+.+    ..+++++++++|+||
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   82 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF   82 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence            46899999999999999999999887  8888776543211 1111110 00112222211    123456678899999


Q ss_pred             EcCCCCCCC-C-CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccH--------HHHHHHHHHhCCCC-----
Q 022263          102 IPAGVPRKP-G-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV--------PIAAEVFKKAGTYN-----  166 (300)
Q Consensus       102 i~ag~~~~~-g-~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~--------~i~~~~~~~~~~~~-----  166 (300)
                      ++||..... . ......+..|+.....+.+.+.++.....+|++|.-.....        ..+.|    .....     
T Consensus        83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E----~~~~~p~~~~  158 (325)
T PLN02989         83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDE----TFFTNPSFAE  158 (325)
T ss_pred             EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCc----CCCCchhHhc
Confidence            999854211 1 11234567788888888888877532234444432111000        00011    00011     


Q ss_pred             -CCcEEEeeehhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263          167 -EKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       167 -~~kviG~t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                       +....|.+.+...++...+++..+++..-++ ..+.|..
T Consensus       159 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~  198 (325)
T PLN02989        159 ERKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPI  198 (325)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCC
Confidence             1234555555555555555666677655554 4477754

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.68  E-value=0.00023  Score=67.29  Aligned_cols=71  Identities=18%  Similarity=0.349  Sum_probs=48.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCC------CCCEEEEEecCC---cccHHHHhc--ccc--------CCCcEEEEecCCcc
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNP------LVSRLALYDIAN---TPGVAADVG--HIN--------TRSEVAGYMGNDQL   90 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~------~~~el~L~D~~~---~~g~~~dl~--~~~--------~~~~v~~~~~t~d~   90 (300)
                      ||+|||+ |..|.++|..|+..+      +..+|.||.+++   .......++  |..        .+..++.   ++|+
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~dl   76 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VPDL   76 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---ECCH
Confidence            6999995 999999999999876      113999998743   112222222  211        1223443   4688


Q ss_pred             ccccCCCCEEEEcC
Q 022263           91 GQALEDSDVVIIPA  104 (300)
Q Consensus        91 ~~a~~~aDiVIi~a  104 (300)
                      ++++++||+||++.
T Consensus        77 ~eal~~ADiIIlAV   90 (342)
T TIGR03376        77 VEAAKGADILVFVI   90 (342)
T ss_pred             HHHHhcCCEEEEEC
Confidence            88999999999984

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.68  E-value=0.00049  Score=68.96  Aligned_cols=116  Identities=19%  Similarity=0.151  Sum_probs=70.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhcc-----cc--CCCcEEEEec--C--Cccccc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGH-----IN--TRSEVAGYMG--N--DQLGQA   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~-----~~--~~~~v~~~~~--t--~d~~~a   93 (300)
                      ....|.|+||+|++|..++..|+..|.  +|++++++..+..  ..++.+     ..  ....+..+.+  +  .++.++
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a  156 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA  156 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence            345799999999999999999998887  8999888653221  111211     00  0012222211  1  234456


Q ss_pred             cCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +.++|+||+++|............+..|......+++.+.+.+-. .||++|
T Consensus       157 LggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VS  207 (576)
T PLN03209        157 LGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVT  207 (576)
T ss_pred             hcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEc
Confidence            899999999998653321111223455777778888888776544 444444

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.66  E-value=0.00012  Score=58.77  Aligned_cols=111  Identities=22%  Similarity=0.305  Sum_probs=65.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhcccc--CCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~--~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      ||+|+||+|.+|..++..|...+.++-+.+++.....|..+.-.+..  ....+...  ..+. +.+.++|+||++.+  
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~Dvvf~a~~--   75 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVE--DADP-EELSDVDVVFLALP--   75 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEE--ETSG-HHHTTESEEEE-SC--
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEe--ecch-hHhhcCCEEEecCc--
Confidence            79999999999999999999987776677777765344322211111  11122221  1233 56899999999843  


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeh
Q 022263          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL  176 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~L  176 (300)
                                    ....+++++.+.+.  ..++  +.+-.+.             .+.++-++|+..+
T Consensus        76 --------------~~~~~~~~~~~~~~--g~~V--iD~s~~~-------------R~~~~~~~~~pev  113 (121)
T PF01118_consen   76 --------------HGASKELAPKLLKA--GIKV--IDLSGDF-------------RLDDDVPYGLPEV  113 (121)
T ss_dssp             --------------HHHHHHHHHHHHHT--TSEE--EESSSTT-------------TTSTTSEEE-HHH
T ss_pred             --------------hhHHHHHHHHHhhC--CcEE--EeCCHHH-------------hCCCCCCEEeCCc
Confidence                          24456666666443  3333  5555541             2556677777544

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=97.66  E-value=0.00032  Score=65.35  Aligned_cols=113  Identities=19%  Similarity=0.118  Sum_probs=68.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC-cccH-HHHhccccCCCcEEEEec-CCc---cccccC--CCCEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGV-AADVGHINTRSEVAGYMG-NDQ---LGQALE--DSDVV  100 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~-~~g~-~~dl~~~~~~~~v~~~~~-t~d---~~~a~~--~aDiV  100 (300)
                      |||.|+||+|++|++++..|+..+.  +|+++|... .... ...+.+... ..+..+.+ -+|   +.++++  ++|+|
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   77 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLGG-KHPTFVEGDIRNEALLTEILHDHAIDTV   77 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhcC-CCceEEEccCCCHHHHHHHHhcCCCCEE
Confidence            6899999999999999999998887  899888632 1111 111111110 01111111 112   233444  68999


Q ss_pred             EEcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       101 Ii~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      |++|+.....  .....+.+..|+.....+++.+++.... .+|.+|
T Consensus        78 vh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  123 (338)
T PRK10675         78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSS  123 (338)
T ss_pred             EECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence            9998864321  1233467788999999999988876433 344443

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=97.66  E-value=0.00093  Score=61.98  Aligned_cols=105  Identities=15%  Similarity=0.102  Sum_probs=65.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccc-cCCCcEEEEec----CCccccccCCCCEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHI-NTRSEVAGYMG----NDQLGQALEDSDVVII  102 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~-~~~~~v~~~~~----t~d~~~a~~~aDiVIi  102 (300)
                      ++|.|+||+|++|++++..|+..|.  +|++...+... .....+... .....+..+.+    ...+.++++++|+||+
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih   83 (322)
T PLN02986          6 KLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH   83 (322)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence            5899999999999999999999887  78765544322 111222111 01112333221    1234566889999999


Q ss_pred             cCCCCCC-CCCcchhhhhhhHHHHHHHHHHHHhh
Q 022263          103 PAGVPRK-PGMTRDDLFNINAGIVKDLCSAIAKY  135 (300)
Q Consensus       103 ~ag~~~~-~g~~r~dl~~~N~~i~~~i~~~i~~~  135 (300)
                      +|+.... ......+++..|+.....+.+.+.+.
T Consensus        84 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~  117 (322)
T PLN02986         84 TASPVFFTVKDPQTELIDPALKGTINVLNTCKET  117 (322)
T ss_pred             eCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc
Confidence            9985321 11122345677888888888887765

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=97.63  E-value=0.00032  Score=65.80  Aligned_cols=156  Identities=9%  Similarity=0.046  Sum_probs=86.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cHHHHhc-ccc--CCCcEEEEec--C--CccccccCC--
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVG-HIN--TRSEVAGYMG--N--DQLGQALED--   96 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~~dl~-~~~--~~~~v~~~~~--t--~d~~~a~~~--   96 (300)
                      ++|.|+||+|++|++++..|+..|.  +|+++|+....   .....+. +..  ....+..+.+  +  ..+.+++++  
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   78 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK   78 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence            4899999999999999999999887  89999975421   1111111 000  0011222211  1  123445664  


Q ss_pred             CCEEEEcCCCCCCCC-C-cchhhhhhhHHHHHHHHHHHHhhCC-C-eEEEEecC------CCcccHHHHHHHHHHhCCCC
Q 022263           97 SDVVIIPAGVPRKPG-M-TRDDLFNINAGIVKDLCSAIAKYCP-N-AIVNMISN------PVNSTVPIAAEVFKKAGTYN  166 (300)
Q Consensus        97 aDiVIi~ag~~~~~g-~-~r~dl~~~N~~i~~~i~~~i~~~~p-~-a~viv~tN------P~d~~~~i~~~~~~~~~~~~  166 (300)
                      .|+||++|+....+. . .....+..|..-...+++.+.+.+- + ..++.+|.      +.+.  + .+   ...+ +.
T Consensus        79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~--~-~~---E~~~-~~  151 (343)
T TIGR01472        79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEI--P-QN---ETTP-FY  151 (343)
T ss_pred             CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCC--C-CC---CCCC-CC
Confidence            599999998643221 1 1223345576677888888877652 2 24444332      1110  0 00   1111 34


Q ss_pred             CCcEEEeeehhHHHHHHHHHHHcCCCC
Q 022263          167 EKKLFGVTTLDVVRAKTFYAGKANVNV  193 (300)
Q Consensus       167 ~~kviG~t~Lds~R~~~~la~~l~v~~  193 (300)
                      |....|.+.+...++....++..+++.
T Consensus       152 p~~~Y~~sK~~~e~~~~~~~~~~~~~~  178 (343)
T TIGR01472       152 PRSPYAAAKLYAHWITVNYREAYGLFA  178 (343)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHhCCce
Confidence            555666666666666666677777643

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PLN02583 cinnamoyl-CoA reductase

Probab=97.63  E-value=0.00087  Score=61.77  Aligned_cols=112  Identities=12%  Similarity=0.043  Sum_probs=69.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH----HHHhccccCCCcEEEEec----CCccccccCCCCEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV----AADVGHINTRSEVAGYMG----NDQLGQALEDSDVV  100 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~----~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aDiV  100 (300)
                      ++|.|+||+|++|++++..|+.+|+  +|++.+.+.....    ..++...  ...++.+.+    ..++.+++.++|.|
T Consensus         7 k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~~~d~v   82 (297)
T PLN02583          7 KSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALKGCSGL   82 (297)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHcCCCEE
Confidence            4799999999999999999999987  8888876421111    1122110  112222211    12345778999999


Q ss_pred             EEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Q 022263          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (300)
Q Consensus       101 Ii~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~  144 (300)
                      +..++.+........+.+..|+.-...+.+.+.+...-..+|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~  126 (297)
T PLN02583         83 FCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFT  126 (297)
T ss_pred             EEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEe
Confidence            98765432211123456788999999999988776311234444

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=97.60  E-value=0.00023  Score=64.74  Aligned_cols=95  Identities=21%  Similarity=0.264  Sum_probs=65.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCC--CEEEEcCCCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDS--DVVIIPAGVP  107 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~a--DiVIi~ag~~  107 (300)
                      ||.|+||+|++|++++..|...+.  ++++++...     .|+.+.            .++.++++++  |+||++++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~~------------~~~~~~~~~~~~d~vi~~a~~~   61 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTDP------------EALERLLRAIRPDAVVNTAAYT   61 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCCH------------HHHHHHHHhCCCCEEEECCccc
Confidence            689999999999999999998887  898887631     233221            1233456655  9999999864


Q ss_pred             CCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          108 RKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       108 ~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ..+.  ......+..|......+++.+.+...  .+|.+|
T Consensus        62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S   99 (287)
T TIGR01214        62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS   99 (287)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            3221  12344567788888999988877653  344444

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=97.59  E-value=0.001  Score=68.33  Aligned_cols=177  Identities=13%  Similarity=0.020  Sum_probs=93.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc---ccccc--CCCCEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL--EDSDVV  100 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~--~~aDiV  100 (300)
                      ++|||.|+||+|++|++++..|...+.--+|+.+|..........+........++.+.+. .|   ....+  .++|+|
T Consensus         5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V   84 (668)
T PLN02260          5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI   84 (668)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence            5679999999999999999999886432388888874211111111110001123332211 12   11222  689999


Q ss_pred             EEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHH-H--HHHhCCCCCCcEEEeee
Q 022263          101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE-V--FKKAGTYNEKKLFGVTT  175 (300)
Q Consensus       101 Ii~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~-~--~~~~~~~~~~kviG~t~  175 (300)
                      |++|+......  ....+....|+.....+.+.+++.+.-..+|.+|. +.+...--.. .  ........|....|.+.
T Consensus        85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS-~~vyg~~~~~~~~~~~E~~~~~p~~~Y~~sK  163 (668)
T PLN02260         85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVST-DEVYGETDEDADVGNHEASQLLPTNPYSATK  163 (668)
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcc-hHHhCCCccccccCccccCCCCCCCCcHHHH
Confidence            99998653211  12235667888888999999887763334554542 1100000000 0  00000022334455555


Q ss_pred             hhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263          176 LDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       176 Lds~R~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                      +...++-...++..+++..-++ ..|+|.+
T Consensus       164 ~~aE~~v~~~~~~~~l~~vilR~~~VyGp~  193 (668)
T PLN02260        164 AGAEMLVMAYGRSYGLPVITTRGNNVYGPN  193 (668)
T ss_pred             HHHHHHHHHHHHHcCCCEEEECcccccCcC
Confidence            5555555555566666655555 4477765

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.57  E-value=0.00092  Score=64.04  Aligned_cols=149  Identities=23%  Similarity=0.181  Sum_probs=82.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccccCCC-cEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRS-EVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~-~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ||||.|||| |+||+.+|..|++.+. .+|++.|+...+ ..+.+..+..... .+.. .....+.+++++.|+||.++.
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~-~d~~al~~li~~~d~VIn~~p   77 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDA-ADVDALVALIKDFDLVINAAP   77 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEecc-cChHHHHHHHhcCCEEEEeCC
Confidence            689999996 9999999999999885 599999996532 2222222111100 1111 112245678899999999875


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe--e----ehhHH
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV--T----TLDVV  179 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~--t----~Lds~  179 (300)
                      ..            -+..++    +.+.+..  .-++-.|+-.+.. +-+-+.++++|      +.++  |    -+++.
T Consensus        78 ~~------------~~~~i~----ka~i~~g--v~yvDts~~~~~~-~~~~~~a~~Ag------it~v~~~G~dPGi~nv  132 (389)
T COG1748          78 PF------------VDLTIL----KACIKTG--VDYVDTSYYEEPP-WKLDEEAKKAG------ITAVLGCGFDPGITNV  132 (389)
T ss_pred             ch------------hhHHHH----HHHHHhC--CCEEEcccCCchh-hhhhHHHHHcC------eEEEcccCcCcchHHH
Confidence            32            223333    3333332  2344456554432 23333344433      4444  2    24444


Q ss_pred             HHHHHHHHHcCCCCCceEEEEE--ecCC
Q 022263          180 RAKTFYAGKANVNVAEVNVPVV--GGHA  205 (300)
Q Consensus       180 R~~~~la~~l~v~~~~V~~~v~--G~h~  205 (300)
                      -+.+ .++++.=...+++.++.  |+|+
T Consensus       133 ~a~~-a~~~~~~~i~si~iy~g~~g~~~  159 (389)
T COG1748         133 LAAY-AAKELFDEIESIDIYVGGLGEHG  159 (389)
T ss_pred             HHHH-HHHHhhccccEEEEEEecCCCCC
Confidence            3344 44555436677776654  5884

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.57  E-value=0.00095  Score=62.22  Aligned_cols=118  Identities=14%  Similarity=0.212  Sum_probs=69.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccc-----cCCCcEEEEecCCccccccCCCCEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-----NTRSEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~-----~~~~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      .+|||+|+|+ |.+|..++..|...++  ++.+++.+..  .+......     .....+.....+++. ++...+|+||
T Consensus         4 ~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi   77 (313)
T PRK06249          4 ETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVL   77 (313)
T ss_pred             cCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEE
Confidence            4589999996 9999999999999887  8999988642  11111100     000001000011222 3567899999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      ++.-..            .    ..+.++.+... .|++.++...|-.+.     .+.+..  .+|++++++-
T Consensus        78 lavK~~------------~----~~~~~~~l~~~~~~~~~iv~lqNG~~~-----~e~l~~--~~~~~~v~~g  127 (313)
T PRK06249         78 VGLKTT------------A----NALLAPLIPQVAAPDAKVLLLQNGLGV-----EEQLRE--ILPAEHLLGG  127 (313)
T ss_pred             EEecCC------------C----hHhHHHHHhhhcCCCCEEEEecCCCCc-----HHHHHH--HCCCCcEEEE
Confidence            985321            1    12333344433 478888888998873     122222  2677887754

>PRK06194 hypothetical protein; Provisional

Probab=97.54  E-value=0.0029  Score=57.48  Aligned_cols=159  Identities=14%  Similarity=0.156  Sum_probs=86.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEecC-Cc---cccccC------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LGQALE------   95 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~~------   95 (300)
                      +++|.|+||+|++|++++..|+..|.  +|+++|.+..  .....++...  ...+..+.+. +|   ++++++      
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~   81 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALERF   81 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999887  8999998542  2222233221  1122222111 12   222222      


Q ss_pred             -CCCEEEEcCCCCCCC---CCcc---hhhhhhhHH----HHHHHHHHHHhhCCC-----eEEEEecCCCcccHHHHHHHH
Q 022263           96 -DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPN-----AIVNMISNPVNSTVPIAAEVF  159 (300)
Q Consensus        96 -~aDiVIi~ag~~~~~---g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~-----a~viv~tNP~d~~~~i~~~~~  159 (300)
                       ..|+||.+||.....   ..+.   ...+..|..    ..+.+.+.+.+.+.+     +.+++++.-...         
T Consensus        82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~---------  152 (287)
T PRK06194         82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGL---------  152 (287)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc---------
Confidence             479999999874321   1111   123445544    444455556655442     566655532221         


Q ss_pred             HHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEEe
Q 022263          160 KKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (300)
Q Consensus       160 ~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G  202 (300)
                        . ..+....++.+..-...+...+++.++.....+++..+.
T Consensus       153 --~-~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~  192 (287)
T PRK06194        153 --L-APPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLC  192 (287)
T ss_pred             --c-CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence              0 123333445543333445566677777666666655443

>PRK07201 short chain dehydrogenase; Provisional

Probab=97.53  E-value=0.00074  Score=68.84  Aligned_cols=108  Identities=13%  Similarity=0.105  Sum_probs=66.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHh--CCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-C---------ccccccCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKL--NPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---------QLGQALED   96 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~--~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~---------d~~~a~~~   96 (300)
                      |||.|+||+|++|++++..|..  .+.  +|+.++++.......++........++.+.+. .         ++ +.+++
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~--~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~-~~l~~   77 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREA--TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADI-AELGD   77 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCC--EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHH-HHhcC
Confidence            6899999999999999999984  444  89999985432222222111000122222111 1         12 22389


Q ss_pred             CCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeE
Q 022263           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI  140 (300)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~  140 (300)
                      +|+||++|+... ......+....|+.-.+.+++.+.+.....+
T Consensus        78 ~D~Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~  120 (657)
T PRK07201         78 IDHVVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERLQAATF  120 (657)
T ss_pred             CCEEEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhcCCCeE
Confidence            999999998642 2223345667789989999988887643333

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=97.53  E-value=0.00045  Score=64.66  Aligned_cols=109  Identities=15%  Similarity=0.043  Sum_probs=66.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cHHHHhccc--cCCCcEEEEec--C--CccccccCC-
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHI--NTRSEVAGYMG--N--DQLGQALED-   96 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~~dl~~~--~~~~~v~~~~~--t--~d~~~a~~~-   96 (300)
                      +.++|.|+||+|++|++++..|...|.  +|+++|.....   .....+...  .....+..+.+  +  .++.+++++ 
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   82 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI   82 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence            457899999999999999999999887  89998874321   111111100  00111222211  1  123344554 


Q ss_pred             -CCEEEEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCC
Q 022263           97 -SDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCP  137 (300)
Q Consensus        97 -aDiVIi~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p  137 (300)
                       .|+||++|+......  ......+..|+.....+++.+.+...
T Consensus        83 ~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~  126 (340)
T PLN02653         83 KPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQ  126 (340)
T ss_pred             CCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhcc
Confidence             599999998643221  12233456688888888888887764

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=97.51  E-value=0.00098  Score=64.13  Aligned_cols=119  Identities=20%  Similarity=0.145  Sum_probs=72.1

Q ss_pred             CCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc----HHHHhccccCCCc-EEE-EecCCcccccc
Q 022263           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG----VAADVGHINTRSE-VAG-YMGNDQLGQAL   94 (300)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g----~~~dl~~~~~~~~-v~~-~~~t~d~~~a~   94 (300)
                      |.....+++||.|+||+|++|++++..|...+.  +|++++++....    ...++........ +.. .....++.+++
T Consensus        53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~  130 (390)
T PLN02657         53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVL  130 (390)
T ss_pred             ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHH
Confidence            666667788999999999999999999998887  899998754211    1111111000111 111 10112234445


Q ss_pred             C----CCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263           95 E----DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        95 ~----~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +    ++|+||.+++.+...   ..+.+..|......+.+.+++.+-. .+|.+|
T Consensus       131 ~~~~~~~D~Vi~~aa~~~~~---~~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iS  181 (390)
T PLN02657        131 FSEGDPVDVVVSCLASRTGG---VKDSWKIDYQATKNSLDAGREVGAK-HFVLLS  181 (390)
T ss_pred             HHhCCCCcEEEECCccCCCC---CccchhhHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            5    599999988753211   1234556777778888888776543 344444

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.48  E-value=0.00087  Score=62.14  Aligned_cols=95  Identities=18%  Similarity=0.160  Sum_probs=60.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~  108 (300)
                      |||+|||. |.+|..++..|...++  +|.+||+++.+..  .+.+..    ........++.+.++++|+|+++.-.  
T Consensus         1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~~~--~l~~~g----~~~~~s~~~~~~~~~~~dvIi~~vp~--   69 (298)
T TIGR00872         1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDAVK--AMKEDR----TTGVANLRELSQRLSAPRVVWVMVPH--   69 (298)
T ss_pred             CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHcC----CcccCCHHHHHhhcCCCCEEEEEcCc--
Confidence            68999995 9999999999999887  8999998754322  222211    11111011333456789999998421  


Q ss_pred             CCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 022263          109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (300)
Q Consensus       109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (300)
                                   - .++++++.+...- ++.++|..||..
T Consensus        70 -------------~-~~~~v~~~l~~~l~~g~ivid~st~~   96 (298)
T TIGR00872        70 -------------G-IVDAVLEELAPTLEKGDIVIDGGNSY   96 (298)
T ss_pred             -------------h-HHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                         1 3445555555553 567777777653

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=97.45  E-value=0.00064  Score=64.05  Aligned_cols=101  Identities=19%  Similarity=0.255  Sum_probs=63.5

Q ss_pred             ccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCC
Q 022263           17 GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED   96 (300)
Q Consensus        17 ~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~   96 (300)
                      |.+.+.......++|+|||. |.+|+.+|..|...|.  +|+.||......  .+.        +. +  +.++++++++
T Consensus       135 w~~~~~~~~l~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~~--~~~--------~~-~--~~~l~ell~~  198 (330)
T PRK12480        135 WQAEIMSKPVKNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNKD--LDF--------LT-Y--KDSVKEAIKD  198 (330)
T ss_pred             cccccCccccCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhHh--hhh--------hh-c--cCCHHHHHhc
Confidence            33333333456679999995 9999999999988777  999999854211  110        11 1  2356788999


Q ss_pred             CCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ||+|+++....           ..+..++.  .+.+....|++++|+++-
T Consensus       199 aDiVil~lP~t-----------~~t~~li~--~~~l~~mk~gavlIN~aR  235 (330)
T PRK12480        199 ADIISLHVPAN-----------KESYHLFD--KAMFDHVKKGAILVNAAR  235 (330)
T ss_pred             CCEEEEeCCCc-----------HHHHHHHh--HHHHhcCCCCcEEEEcCC
Confidence            99999985321           11222221  122333347889988864

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=97.45  E-value=0.00064  Score=62.60  Aligned_cols=108  Identities=16%  Similarity=0.187  Sum_probs=63.9

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCc-cccc-----cCCCCEEEEcC
Q 022263           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ-LGQA-----LEDSDVVIIPA  104 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d-~~~a-----~~~aDiVIi~a  104 (300)
                      |.|+||+|++|++++..|...|. +.+.++|..........+.+..    +.......+ .++.     +.++|+||++|
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~----~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A   76 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLD----IADYMDKEDFLAQIMAGDDFGDIEAIFHEG   76 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhh----hhhhhhHHHHHHHHhcccccCCccEEEECc
Confidence            78999999999999999998875 3577778743211100111110    000000001 1112     23799999999


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +.+..........+..|......+.+.+.+.+.  .+|..|
T Consensus        77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~S  115 (308)
T PRK11150         77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  115 (308)
T ss_pred             eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEc
Confidence            854333333345677889888999998887653  344443

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.45  E-value=0.00078  Score=61.09  Aligned_cols=95  Identities=18%  Similarity=0.284  Sum_probs=60.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCC--CCEEEEE-ecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALY-DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~--~~el~L~-D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |||++||. |.+|..++..|.+.++  ..+|+.+ |+++.+..  .+.+.    .++.   .++..++++++|+||++. 
T Consensus         1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~--~~~~~----g~~~---~~~~~e~~~~aDvVil~v-   69 (266)
T PLN02688          1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPARRD--VFQSL----GVKT---AASNTEVVKSSDVIILAV-   69 (266)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHH--HHHHc----CCEE---eCChHHHHhcCCEEEEEE-
Confidence            79999995 9999999999998875  3478888 76543222  22221    2222   234456788999999986 


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCc
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN  149 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d  149 (300)
                      .|               +.++++.+.+... .|+.++|..++...
T Consensus        70 ~~---------------~~~~~vl~~l~~~~~~~~~iIs~~~g~~   99 (266)
T PLN02688         70 KP---------------QVVKDVLTELRPLLSKDKLLVSVAAGIT   99 (266)
T ss_pred             Cc---------------HHHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence            12               2234444455444 35666666656554

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.44  E-value=0.00082  Score=60.96  Aligned_cols=96  Identities=14%  Similarity=0.224  Sum_probs=60.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCC-CEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLV-SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~-~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      ||||+|||+ |.+|..++..|.+.+.. .++.++|.++....  .+.+..   .+..   +++..+.++++|+||++.- 
T Consensus         2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~--~~~~~~---g~~~---~~~~~~~~~~advVil~v~-   71 (267)
T PRK11880          2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEKRA--ALAEEY---GVRA---ATDNQEAAQEADVVVLAVK-   71 (267)
T ss_pred             CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHHHH--HHHHhc---CCee---cCChHHHHhcCCEEEEEcC-
Confidence            579999995 99999999998887631 37899998643222  222211   1221   2344566889999999852 


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                                     ...++++.+.+..+. +..++.++|-..
T Consensus        72 ---------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~   98 (267)
T PRK11880         72 ---------------PQVMEEVLSELKGQL-DKLVVSIAAGVT   98 (267)
T ss_pred             ---------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence                           122444555554443 456666777654

>PRK07680 late competence protein ComER; Validated

Probab=97.40  E-value=0.001  Score=60.73  Aligned_cols=97  Identities=14%  Similarity=0.207  Sum_probs=62.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCC--CEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~--~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      |||+|||+ |.+|..++..|...+..  .++.++|+++....  .+.+.. + .+..   +.+..+.++++|+||++.- 
T Consensus         1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~--~~~~~~-~-g~~~---~~~~~~~~~~aDiVilav~-   71 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAKAY--HIKERY-P-GIHV---AKTIEEVISQSDLIFICVK-   71 (273)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHH--HHHHHc-C-CeEE---ECCHHHHHHhCCEEEEecC-
Confidence            58999995 99999999999887742  47999998653222  222211 1 2332   2344566899999999851 


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCc
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN  149 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d  149 (300)
                                     -..+.++.+.+..+ .++.+++-++|++.
T Consensus        72 ---------------p~~~~~vl~~l~~~l~~~~~iis~~ag~~  100 (273)
T PRK07680         72 ---------------PLDIYPLLQKLAPHLTDEHCLVSITSPIS  100 (273)
T ss_pred             ---------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence                           11234444555544 35678888888875

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.40  E-value=0.0027  Score=58.26  Aligned_cols=99  Identities=17%  Similarity=0.144  Sum_probs=62.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCC--CEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~--~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |+||+|||+ |.+|.+++..|...+..  .+|.++|.+... ....+.... . .+..   +++..+.++++|+||++..
T Consensus         1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~~-~-~~~~---~~~~~e~~~~aDvVilavp   73 (277)
T PRK06928          1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDKY-P-TVEL---ADNEAEIFTKCDHSFICVP   73 (277)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHHc-C-CeEE---eCCHHHHHhhCCEEEEecC
Confidence            579999995 99999999999887732  479999875421 112222211 1 1222   2345567899999999853


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCc
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (300)
                      .                ..+.++++.+..+- ++..+|.+.|-++
T Consensus        74 p----------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~  102 (277)
T PRK06928         74 P----------------LAVLPLLKDCAPVLTPDRHVVSIAAGVS  102 (277)
T ss_pred             H----------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            1                22455556665543 4567777777766

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=97.34  E-value=0.0018  Score=58.05  Aligned_cols=113  Identities=19%  Similarity=0.176  Sum_probs=65.2

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec--C---Ccccccc-CC
Q 022263           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG--N---DQLGQAL-ED   96 (300)
Q Consensus        23 ~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--t---~d~~~a~-~~   96 (300)
                      .+..+++||.|+||+|++|+.++..|++.+.  +|+.+.++....... +.+ .  ..+..+.+  +   .++.+.+ .+
T Consensus        12 ~~~~~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~-~~~-~--~~~~~~~~Dl~d~~~~l~~~~~~~   85 (251)
T PLN00141         12 AENVKTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKTS-LPQ-D--PSLQIVRADVTEGSDKLVEAIGDD   85 (251)
T ss_pred             cccccCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHHh-ccc-C--CceEEEEeeCCCCHHHHHHHhhcC
Confidence            4455678999999999999999999998886  787776543221111 111 0  01221111  1   1233456 68


Q ss_pred             CCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Q 022263           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (300)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~  144 (300)
                      +|+||+++|.....+.  .+.+..|..-...+++.+.+.... .++.+
T Consensus        86 ~d~vi~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~-~iV~i  130 (251)
T PLN00141         86 SDAVICATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVT-RFILV  130 (251)
T ss_pred             CCEEEECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCC-EEEEE
Confidence            9999998875422111  112234555566677777665443 34433

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=97.34  E-value=0.00021  Score=62.59  Aligned_cols=163  Identities=17%  Similarity=0.157  Sum_probs=89.4

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEe----cCCccccccCCC--CEEEEcC
Q 022263           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALEDS--DVVIIPA  104 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~~a~~~a--DiVIi~a  104 (300)
                      |.|+||+|++|++++..|...+.  +++-+...+......+...     .+..+.    ...++++.+++.  |.||++|
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~-----~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a   73 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKL-----NVEFVIGDLTDKEQLEKLLEKANIDVVIHLA   73 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHT-----TEEEEESETTSHHHHHHHHHHHTESEEEEEB
T ss_pred             EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccc-----eEEEEEeeccccccccccccccCceEEEEee
Confidence            78999999999999999999987  6554444332221111111     111110    012344566666  9999999


Q ss_pred             CCCCC--CCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHH--HHHHhCCCCCCcEEEeeehhHHH
Q 022263          105 GVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE--VFKKAGTYNEKKLFGVTTLDVVR  180 (300)
Q Consensus       105 g~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~--~~~~~~~~~~~kviG~t~Lds~R  180 (300)
                      +....  ....-.+.+..|+...+.+.+.+.+... ..++..+. ...  |-...  .+.....+.+....|.+.....+
T Consensus        74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~sS-~~~--y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~  149 (236)
T PF01370_consen   74 AFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLSS-ASV--YGDPDGEPIDEDSPINPLSPYGASKRAAEE  149 (236)
T ss_dssp             SSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE-GGG--GTSSSSSSBETTSGCCHSSHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccc-cccccccc-ccc--cccccccccccccccccccccccccccccc
Confidence            87531  1123456778899999999999999877 34444432 221  00000  00000000111223333333444


Q ss_pred             HHHHHHHHcCCCCCceEE-EEEecC
Q 022263          181 AKTFYAGKANVNVAEVNV-PVVGGH  204 (300)
Q Consensus       181 ~~~~la~~l~v~~~~V~~-~v~G~h  204 (300)
                      +...++++.+++...++. .++|.+
T Consensus       150 ~~~~~~~~~~~~~~~~R~~~vyG~~  174 (236)
T PF01370_consen  150 LLRDYAKKYGLRVTILRPPNVYGPG  174 (236)
T ss_dssp             HHHHHHHHHTSEEEEEEESEEESTT
T ss_pred             ccccccccccccccccccccccccc
Confidence            455556666777777764 467765

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PLN02240 UDP-glucose 4-epimerase

Probab=97.32  E-value=0.001  Score=62.35  Aligned_cols=115  Identities=19%  Similarity=0.155  Sum_probs=69.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhcccc--CCCcEEEEec--C--CccccccC--CC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHIN--TRSEVAGYMG--N--DQLGQALE--DS   97 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~--~~~~v~~~~~--t--~d~~~a~~--~a   97 (300)
                      .+||.|+||+|++|++++..|...+.  +|+++|......  ....+.+..  ....+..+.+  +  .++.++++  ++
T Consensus         5 ~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~   82 (352)
T PLN02240          5 GRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRF   82 (352)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCC
Confidence            45899999999999999999998886  899998643211  111111110  0111222211  1  12333343  68


Q ss_pred             CEEEEcCCCCCC-CC-CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263           98 DVVIIPAGVPRK-PG-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        98 DiVIi~ag~~~~-~g-~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      |+||++|+.... +. ....+.+..|+.....+++.+.+..... ++.+|
T Consensus        83 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S  131 (352)
T PLN02240         83 DAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKK-LVFSS  131 (352)
T ss_pred             CEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEc
Confidence            999999986421 11 2334567889988889998887765343 44444

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.31  E-value=0.0017  Score=59.75  Aligned_cols=66  Identities=21%  Similarity=0.269  Sum_probs=49.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      +||++|| .|.+|+.+|..|...|+  ++..||+++.+. +..+....    ...   ..+..++.+++|+||.+..
T Consensus         1 ~kIafIG-LG~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~G----a~~---a~s~~eaa~~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIG-LGIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAG----ATV---AASPAEAAAEADVVITMLP   66 (286)
T ss_pred             CeEEEEc-CchhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcC----Ccc---cCCHHHHHHhCCEEEEecC
Confidence            5899999 59999999999999998  999999976553 22233321    111   1234688999999999853

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=97.31  E-value=0.0013  Score=60.40  Aligned_cols=109  Identities=14%  Similarity=0.107  Sum_probs=65.4

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccc----cCCCCEEEEcCCC
Q 022263           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA----LEDSDVVIIPAGV  106 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a----~~~aDiVIi~ag~  106 (300)
                      |.|+||+|++|++++..|...+. .+++++|..........+........+..   ...++..    +.++|+||++|+.
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~D~vvh~A~~   76 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHKFLNLADLVIADYIDK---EDFLDRLEKGAFGKIEAIFHQGAC   76 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchhhhhhhheeeeccCcc---hhHHHHHHhhccCCCCEEEECccc
Confidence            57999999999999999998884 26888886432211111111000000110   0111111    2589999999986


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ......+....+..|......+.+.+.+...  .+|.+|
T Consensus        77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S  113 (314)
T TIGR02197        77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS  113 (314)
T ss_pred             cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence            4322223345667888888999998887653  355454

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.30  E-value=0.00055  Score=55.60  Aligned_cols=102  Identities=22%  Similarity=0.286  Sum_probs=54.9

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ...+||+|||+ |.||.+++..|...++  +|.-+-.. ...-...+.+...  ....    .++++.++++|++|++..
T Consensus         8 ~~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~sr-s~~sa~~a~~~~~--~~~~----~~~~~~~~~aDlv~iavp   77 (127)
T PF10727_consen    8 AARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSR-SPASAERAAAFIG--AGAI----LDLEEILRDADLVFIAVP   77 (127)
T ss_dssp             ----EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSC-HH-HHHHHHC--T--T---------TTGGGCC-SEEEE-S-
T ss_pred             CCccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeC-Ccccccccccccc--cccc----cccccccccCCEEEEEec
Confidence            35689999996 9999999999999987  66655332 1112222333211  1111    244577899999999952


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhh---CCCeEEEEe--cCCCcccHH
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMI--SNPVNSTVP  153 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~--tNP~d~~~~  153 (300)
                           +           ..+.+++++|..+   -|+.+++=.  +-+++.+.+
T Consensus        78 -----D-----------daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p  114 (127)
T PF10727_consen   78 -----D-----------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP  114 (127)
T ss_dssp             -----C-----------CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHH
T ss_pred             -----h-----------HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhh
Confidence                 1           1356788888776   245444433  235665544

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=97.30  E-value=0.002  Score=61.11  Aligned_cols=110  Identities=20%  Similarity=0.219  Sum_probs=71.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccccCCCcEEEEe----cCCccccccCCCCEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVI  101 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~----~t~d~~~a~~~aDiVI  101 (300)
                      ++.++.|+||+|++|.++...|.+.+...||.++|..... ....|.... ....++...    ...+...++.++ .|+
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv   80 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSISNAFQGA-VVV   80 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhhhhccCc-eEE
Confidence            4568999999999999999999998866699999996531 111111110 111233221    123466789999 666


Q ss_pred             EcCCCC-CCCCC-cchhhhhhhHHHHHHHHHHHHhhCCC
Q 022263          102 IPAGVP-RKPGM-TRDDLFNINAGIVKDLCSAIAKYCPN  138 (300)
Q Consensus       102 i~ag~~-~~~g~-~r~dl~~~N~~i~~~i~~~i~~~~p~  138 (300)
                      ++|..+ ..-.+ .|......|+.-.+.+.+.+.+.+-+
T Consensus        81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~  119 (361)
T KOG1430|consen   81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK  119 (361)
T ss_pred             EeccccCccccccchhhheeecchhHHHHHHHHHHhCCC
Confidence            655433 22233 36666778999999999999887643

>PRK12320 hypothetical protein; Provisional

Probab=97.29  E-value=0.0016  Score=66.97  Aligned_cols=101  Identities=15%  Similarity=0.092  Sum_probs=64.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~  108 (300)
                      |||.|+||+|++|++++..|...++  +|+.+|.....     ..+... ..+..-.....+.++++++|+||++|+...
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~~v-e~v~~Dl~d~~l~~al~~~D~VIHLAa~~~   72 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDPRV-DYVCASLRNPVLQELAGEADAVIHLAPVDT   72 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccCCc-eEEEccCCCHHHHHHhcCCCEEEEcCccCc
Confidence            6999999999999999999998887  89999874321     111000 011110001123455789999999997531


Q ss_pred             CCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                        ..    ....|.....++++.+++.+.  .+|.+|
T Consensus        73 --~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S  101 (699)
T PRK12320         73 --SA----PGGVGITGLAHVANAAARAGA--RLLFVS  101 (699)
T ss_pred             --cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence              11    123577778888888877654  444444

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.28  E-value=0.0016  Score=60.93  Aligned_cols=111  Identities=14%  Similarity=0.202  Sum_probs=72.0

Q ss_pred             hHHHHHHHHHhCCCCCEEEEEecCCcc----------cH--HHH----hcccc---------CCCcEEEEecCCcccccc
Q 022263           40 IGQPLALLMKLNPLVSRLALYDIANTP----------GV--AAD----VGHIN---------TRSEVAGYMGNDQLGQAL   94 (300)
Q Consensus        40 VG~~~a~~L~~~~~~~el~L~D~~~~~----------g~--~~d----l~~~~---------~~~~v~~~~~t~d~~~a~   94 (300)
                      ||..+|..++..|+  +|+|+|.++..          +.  ..+    +....         ...+++... +.+.++++
T Consensus         1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~a~   77 (314)
T PRK08269          1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVA-RDGAADAL   77 (314)
T ss_pred             CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeec-CcchHHHh
Confidence            57888999999998  99999997621          11  000    00000         012344321 12356789


Q ss_pred             CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      ++||+||.++              .+|.++.+++..++.+.++ ++++  .||.....   ++++.....  .|+|++|+
T Consensus        78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~---~~~la~~~~--~p~r~~g~  136 (314)
T PRK08269         78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFL---VTDLQRHVA--HPERFLNA  136 (314)
T ss_pred             ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCC---HHHHHhhcC--CcccEEEE
Confidence            9999999984              5678889999999999875 6665  78877642   344444432  36788887


Q ss_pred             e
Q 022263          174 T  174 (300)
Q Consensus       174 t  174 (300)
                      .
T Consensus       137 H  137 (314)
T PRK08269        137 H  137 (314)
T ss_pred             e
Confidence            4

>PRK05865 hypothetical protein; Provisional

Probab=97.27  E-value=0.00087  Score=70.34  Aligned_cols=104  Identities=18%  Similarity=0.110  Sum_probs=68.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCccccccCCCCEEEEcCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      |||.|+||+|++|++++..|...|.  +|+.+|......    +.. .. ..+.. .....++.++++++|+||++|+..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~~-~v-~~v~gDL~D~~~l~~al~~vD~VVHlAa~~   72 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WPS-SA-DFIAADIRDATAVESAMTGADVVAHCAWVR   72 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----ccc-Cc-eEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence            6899999999999999999998887  899998753210    110 00 01111 111123456788999999998753


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 022263          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (300)
                      . +      ....|......+++.+.+.+.. .+|.+|.+.
T Consensus        73 ~-~------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~  105 (854)
T PRK05865         73 G-R------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH  105 (854)
T ss_pred             c-c------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence            2 1      3466887788888888776533 455566553

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.27  E-value=0.00078  Score=65.86  Aligned_cols=67  Identities=24%  Similarity=0.359  Sum_probs=47.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |||+||||.|.+|..++..|...++  ++.++|.++....  ++....   .+..   +++..++++++|+||++..
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~~--~~a~~~---gv~~---~~~~~e~~~~aDvVIlavp   67 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKGK--EVAKEL---GVEY---ANDNIDAAKDADIVIISVP   67 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHHH--HHHHHc---CCee---ccCHHHHhccCCEEEEecC
Confidence            6899998669999999999998887  8999998653221  111110   1221   2355678899999999863

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.27  E-value=0.0012  Score=60.88  Aligned_cols=65  Identities=22%  Similarity=0.266  Sum_probs=46.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +|||+|||. |.+|..++..|...++  +|.+||+++....  .+...    .+..   +++++++++++|+||++.
T Consensus         2 ~~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~~--~~~~~----g~~~---~~~~~e~~~~~d~vi~~v   66 (296)
T PRK11559          2 TMKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAVA--EVIAA----GAET---ASTAKAVAEQCDVIITML   66 (296)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHC----CCee---cCCHHHHHhcCCEEEEeC
Confidence            368999995 9999999999998887  8999998653322  12211    1111   235667789999999985

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.26  E-value=0.002  Score=59.15  Aligned_cols=65  Identities=22%  Similarity=0.224  Sum_probs=44.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      |||+|||. |.+|..++..|...++  +|.++|.++....  .+.+..   .+..  .+++. +++++||+||++.
T Consensus         1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~--~a~~~g---~~~~--~~~~~-~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCE--RAIERG---LVDE--ASTDL-SLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHCC---Cccc--ccCCH-hHhcCCCEEEEcC
Confidence            68999995 9999999999998887  8999998643211  111111   1111  12333 5689999999985

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.25  E-value=0.0015  Score=62.57  Aligned_cols=54  Identities=22%  Similarity=0.442  Sum_probs=43.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      .++||+||||.|.+|..++..|...|+  +|.++|.+..                      ++.++++++||+||++.
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlVilav  150 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMVIVSV  150 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEEEEeC
Confidence            457999999669999999999999887  8999997420                      12346688999999986

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.23  E-value=0.0015  Score=64.51  Aligned_cols=97  Identities=15%  Similarity=0.206  Sum_probs=62.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC--CCcEEEEecCCccccccC---CCCEEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--RSEVAGYMGNDQLGQALE---DSDVVII  102 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~--~~~v~~~~~t~d~~~a~~---~aDiVIi  102 (300)
                      |.+|+|||. |.+|.++|..|+..|+  +|.+||+++.+..  ++.....  ...+..   ++++++.++   ++|+|++
T Consensus         1 ~~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~~~--~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil   72 (470)
T PTZ00142          1 MSDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEKTE--EFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVIL   72 (470)
T ss_pred             CCEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEE
Confidence            458999995 9999999999999998  8999999654322  2222100  111222   345656654   5898888


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCC
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNP  147 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP  147 (300)
                      ++-               +.+.++++.+.+..+ .|+.++|..+|-
T Consensus        73 ~v~---------------~~~~v~~vi~~l~~~L~~g~iIID~gn~  103 (470)
T PTZ00142         73 LIK---------------AGEAVDETIDNLLPLLEKGDIIIDGGNE  103 (470)
T ss_pred             EeC---------------ChHHHHHHHHHHHhhCCCCCEEEECCCC
Confidence            742               223445555555544 467788888764

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.22  E-value=0.001  Score=61.65  Aligned_cols=65  Identities=18%  Similarity=0.238  Sum_probs=47.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      |+||+|||. |.+|..++..|+..++  +|.+||+++.+..  ++....    ...   ..++.+++++||+||++.
T Consensus         1 m~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~~~--~~~~~g----~~~---~~s~~~~~~~aDvVi~~v   65 (296)
T PRK15461          1 MAAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQAVD--ALVDKG----ATP---AASPAQAAAGAEFVITML   65 (296)
T ss_pred             CCeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHcC----Ccc---cCCHHHHHhcCCEEEEec
Confidence            359999995 9999999999999887  8999998654322  232211    111   234567889999999985

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.21  E-value=0.0021  Score=61.18  Aligned_cols=68  Identities=21%  Similarity=0.282  Sum_probs=46.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +||+|||. |.+|.+++..|...++  ++.++|.++.......-....   .+..  .++++++++++||+||++.
T Consensus         1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~---~~~~--~~~~~~~~~~~aDlVilav   68 (359)
T PRK06545          1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFG---VIDE--LAADLQRAAAEADLIVLAV   68 (359)
T ss_pred             CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCC---CCcc--cccCHHHHhcCCCEEEEeC
Confidence            37999995 9999999999999887  788898865432211111111   0111  1245667889999999985

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.20  E-value=0.0034  Score=56.07  Aligned_cols=99  Identities=10%  Similarity=0.202  Sum_probs=58.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCC--CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +.+||+|||+ |.+|.+++..+...+.  ..+++.++.... ....++.+..   .+..   ++|+++.++++|+||++.
T Consensus         3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~---~~~~~~~~~~~DiViiav   74 (245)
T PRK07634          3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY---NVST---TTDWKQHVTSVDTIVLAM   74 (245)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc---CcEE---eCChHHHHhcCCEEEEec
Confidence            3578999995 9999999998887653  334777775321 1122232211   1222   235567789999999984


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      -.                ...+++++.+..+-++.++|.++.-.+
T Consensus        75 p~----------------~~~~~v~~~l~~~~~~~~vis~~~gi~  103 (245)
T PRK07634         75 PP----------------SAHEELLAELSPLLSNQLVVTVAAGIG  103 (245)
T ss_pred             CH----------------HHHHHHHHHHHhhccCCEEEEECCCCC
Confidence            21                123444444444333446666666555

>PLN02686 cinnamoyl-CoA reductase

Probab=97.19  E-value=0.0012  Score=62.80  Aligned_cols=108  Identities=11%  Similarity=0.137  Sum_probs=66.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhccc---c-CCCcEEEEec--C--CccccccCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHI---N-TRSEVAGYMG--N--DQLGQALED   96 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~---~-~~~~v~~~~~--t--~d~~~a~~~   96 (300)
                      .++++|.|+||+|++|++++..|+..|.  +|+++..+.... ...++...   . ....+..+.+  +  .++.+++++
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~  128 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDG  128 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHh
Confidence            4567999999999999999999999887  787765432211 11112110   0 0001222211  1  234567889


Q ss_pred             CCEEEEcCCCCCCCCC--cchhhhhhhHHHHHHHHHHHHhh
Q 022263           97 SDVVIIPAGVPRKPGM--TRDDLFNINAGIVKDLCSAIAKY  135 (300)
Q Consensus        97 aDiVIi~ag~~~~~g~--~r~dl~~~N~~i~~~i~~~i~~~  135 (300)
                      +|.||++++.....+.  ....+...|..-...+.+.+.+.
T Consensus       129 ~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~  169 (367)
T PLN02686        129 CAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRT  169 (367)
T ss_pred             ccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhc
Confidence            9999998875422221  12344566888888899888775

>PRK12367 short chain dehydrogenase; Provisional

Probab=97.17  E-value=0.004  Score=55.94  Aligned_cols=112  Identities=13%  Similarity=0.189  Sum_probs=65.6

Q ss_pred             ccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCccccccCCC
Q 022263           19 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDS   97 (300)
Q Consensus        19 ~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~~~a   97 (300)
                      .+|.+...+.+++.|+||+|.+|.+++..|+..|.  ++++.+.++........ +.. ...+.. .....+.++.+...
T Consensus         5 ~~~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~~-~~~-~~~~~~D~~~~~~~~~~~~~i   80 (245)
T PRK12367          5 DPMAQSTWQGKRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESND-ESP-NEWIKWECGKEESLDKQLASL   80 (245)
T ss_pred             chhhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhhc-cCC-CeEEEeeCCCHHHHHHhcCCC
Confidence            34566666667899999999999999999999887  89999886421111111 110 001111 11011233456789


Q ss_pred             CEEEEcCCCCCCCCCcc---hhhhhhhHH----HHHHHHHHHHh
Q 022263           98 DVVIIPAGVPRKPGMTR---DDLFNINAG----IVKDLCSAIAK  134 (300)
Q Consensus        98 DiVIi~ag~~~~~g~~r---~dl~~~N~~----i~~~i~~~i~~  134 (300)
                      |++|.+||.......+.   .+.+..|..    +.+.+.+.+.+
T Consensus        81 DilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~  124 (245)
T PRK12367         81 DVLILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALN  124 (245)
T ss_pred             CEEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            99999998743222222   234555654    44555555543

>PLN02253 xanthoxin dehydrogenase

Probab=97.17  E-value=0.0071  Score=54.75  Aligned_cols=158  Identities=16%  Similarity=0.226  Sum_probs=81.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---ccccc------
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQAL------   94 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a~------   94 (300)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|.+....  ...++..   ...+..+.. -+|   .++++      
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~   91 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVDK   91 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHHH
Confidence            445899999999999999999999887  899999854221  1122211   111221110 112   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC-C----Cc---chhhhhhhHHHH----HHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHH
Q 022263           95 -EDSDVVIIPAGVPRKP-G----MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKK  161 (300)
Q Consensus        95 -~~aDiVIi~ag~~~~~-g----~~---r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~  161 (300)
                       ...|++|++||....+ +    .+   -...+..|..-.    +...+.+.+. ..+.+++++.....           
T Consensus        92 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~ii~isS~~~~-----------  159 (280)
T PLN02253         92 FGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPL-KKGSIVSLCSVASA-----------  159 (280)
T ss_pred             hCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCceEEEecChhhc-----------
Confidence             3689999999874321 1    11   123445564433    3444444332 34556656532220           


Q ss_pred             hCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEEe
Q 022263          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (300)
Q Consensus       162 ~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G  202 (300)
                      .+ .+....++.+..-...+.+.++++++-.--.|++..-|
T Consensus       160 ~~-~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg  199 (280)
T PLN02253        160 IG-GLGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPY  199 (280)
T ss_pred             cc-CCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeC
Confidence            11 22223455543333456667777775332233334344

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.16  E-value=0.0028  Score=58.91  Aligned_cols=70  Identities=20%  Similarity=0.222  Sum_probs=47.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      .+||+|||+ |.+|..++..|...+...+|.++|.++....  .+.....  ....   ..+.+++++++|+||++..
T Consensus         6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~--~a~~~g~--~~~~---~~~~~~~~~~aDvViiavp   75 (307)
T PRK07502          6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRA--RARELGL--GDRV---TTSAAEAVKGADLVILCVP   75 (307)
T ss_pred             CcEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHH--HHHhCCC--Ccee---cCCHHHHhcCCCEEEECCC
Confidence            369999995 9999999999998876458999998653211  1111111  0111   2344567899999999864

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.16  E-value=0.0014  Score=60.42  Aligned_cols=64  Identities=19%  Similarity=0.280  Sum_probs=46.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ||+|||. |.+|+.++..|...++  +|.+||+++.+..  .+.+..    ...   .++..+++++||+||++..
T Consensus         1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~~aDivi~~vp   64 (291)
T TIGR01505         1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEVAD--ELLAAG----AVT---AETARQVTEQADVIFTMVP   64 (291)
T ss_pred             CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC----Ccc---cCCHHHHHhcCCEEEEecC
Confidence            6999995 9999999999999887  8999998653222  222221    111   2345678899999999853

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.15  E-value=0.0024  Score=59.78  Aligned_cols=73  Identities=30%  Similarity=0.392  Sum_probs=50.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCC-CCCEEEEEecCCcccHH-HHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVA-ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~-~~~el~L~D~~~~~g~~-~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ++||+|+||+|.||+.+...|.+.. .++++.++-..+..|+. .++..-..  .+...  ..|. .+++++|+|++++|
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~~--~~~~-~~~~~~Divf~~ag   75 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPED--AADE-FVFSDVDIVFFAAG   75 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCccc--cccc-cccccCCEEEEeCc
Confidence            4799999999999999999999853 46778888776655554 44443221  11110  1222 45789999999987

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.15  E-value=0.005  Score=58.71  Aligned_cols=110  Identities=21%  Similarity=0.295  Sum_probs=69.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc------ccHH------HH--hccccCCCcEEEEecCCccccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT------PGVA------AD--VGHINTRSEVAGYMGNDQLGQA   93 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~------~g~~------~d--l~~~~~~~~v~~~~~t~d~~~a   93 (300)
                      .++|+||| -|+||..+|-.++..|.  +++-+|+++.      .|+.      +|  +.......+++.   |+|. +.
T Consensus         9 ~~~I~ViG-LGYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra---Ttd~-~~   81 (436)
T COG0677           9 SATIGVIG-LGYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA---TTDP-EE   81 (436)
T ss_pred             ceEEEEEc-cccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE---ecCh-hh
Confidence            47999999 59999999999999998  8999999752      1210      11  111111224554   5676 55


Q ss_pred             cCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe--cCCCcc
Q 022263           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNS  150 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~--tNP~d~  150 (300)
                      ++.||++||++-.|.+...      +-.+..+.+-++.|.++=.++=++++  |-|..+
T Consensus        82 l~~~dv~iI~VPTPl~~~~------~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGT  134 (436)
T COG0677          82 LKECDVFIICVPTPLKKYR------EPDLSYVESAARSIAPVLKKGDLVILESTTPPGT  134 (436)
T ss_pred             cccCCEEEEEecCCcCCCC------CCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCc
Confidence            7899999999877754421      12344455566666665444433333  666664

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.15  E-value=0.0016  Score=59.68  Aligned_cols=67  Identities=10%  Similarity=0.230  Sum_probs=46.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCC--CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +||++||+ |+||.+++..|.+.++  ..+|+.+|+++..  ...+.+..   .++.   +++..+.+++||+||++.
T Consensus         3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~--~~~l~~~~---g~~~---~~~~~e~~~~aDiIiLav   71 (272)
T PRK12491          3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSN--LKNASDKY---GITI---TTNNNEVANSADILILSI   71 (272)
T ss_pred             CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHH--HHHHHHhc---CcEE---eCCcHHHHhhCCEEEEEe
Confidence            58999995 9999999999998875  3479999875432  22222211   1222   234456789999999985

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.14  E-value=0.0037  Score=57.28  Aligned_cols=98  Identities=15%  Similarity=0.248  Sum_probs=59.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCC--CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      .|||+|||+ |.+|.+++..|...+.  ..+|.++|++..+ ...++....   .++.   +++..+..++||+||++.-
T Consensus         3 ~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~-~~~~l~~~~---g~~~---~~~~~e~~~~aDvVilav~   74 (279)
T PRK07679          3 IQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNET-RLQELHQKY---GVKG---THNKKELLTDANILFLAMK   74 (279)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCHH-HHHHHHHhc---CceE---eCCHHHHHhcCCEEEEEeC
Confidence            479999995 9999999999998762  2478888874321 122332211   1222   2344567899999999852


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCc
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN  149 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d  149 (300)
                          |.            .+.++.+.+..+ .++.++|.+.+-+.
T Consensus        75 ----p~------------~~~~vl~~l~~~~~~~~liIs~~aGi~  103 (279)
T PRK07679         75 ----PK------------DVAEALIPFKEYIHNNQLIISLLAGVS  103 (279)
T ss_pred             ----HH------------HHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence                11            122333444443 35667776656554

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=97.12  E-value=0.0042  Score=58.08  Aligned_cols=93  Identities=18%  Similarity=0.245  Sum_probs=61.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ...++|+|+|. |.||+.++..|...|.  ++..||.......  ...         .+....++++.+++||+|+++..
T Consensus       134 l~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~~--~~~---------~~~~~~~l~e~l~~aDvvv~~lP  199 (312)
T PRK15469        134 REDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSWP--GVQ---------SFAGREELSAFLSQTRVLINLLP  199 (312)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCCC--Cce---------eecccccHHHHHhcCCEEEECCC
Confidence            34569999995 9999999999998887  8999997432110  000         00112356788999999999853


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ..           ..+..++.  .+.+....|++++|+++
T Consensus       200 lt-----------~~T~~li~--~~~l~~mk~ga~lIN~a  226 (312)
T PRK15469        200 NT-----------PETVGIIN--QQLLEQLPDGAYLLNLA  226 (312)
T ss_pred             CC-----------HHHHHHhH--HHHHhcCCCCcEEEECC
Confidence            21           22333332  34455556899999885

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.09  E-value=0.0037  Score=57.97  Aligned_cols=91  Identities=14%  Similarity=0.252  Sum_probs=56.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCC---CCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED---SDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~---aDiVIi~ag  105 (300)
                      |||+|||. |.+|+.++..|...++  +|..||.++.+..  .+.+..    ...   ..++++.+++   +|+||++..
T Consensus         1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~~~--~~~~~g----~~~---~~s~~~~~~~~~~advVi~~vp   68 (299)
T PRK12490          1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEAVD--VAGKLG----ITA---RHSLEELVSKLEAPRTIWVMVP   68 (299)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHHCC----Cee---cCCHHHHHHhCCCCCEEEEEec
Confidence            58999995 9999999999999887  8999998653322  222211    121   2344555554   689998743


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecC
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN  146 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tN  146 (300)
                      .+               +.++++++.+... .++.++|..|+
T Consensus        69 ~~---------------~~~~~v~~~i~~~l~~g~ivid~st   95 (299)
T PRK12490         69 AG---------------EVTESVIKDLYPLLSPGDIVVDGGN   95 (299)
T ss_pred             Cc---------------hHHHHHHHHHhccCCCCCEEEECCC
Confidence            11               2233333444433 35667777643

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.07  E-value=0.0046  Score=54.13  Aligned_cols=35  Identities=29%  Similarity=0.518  Sum_probs=30.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~   63 (300)
                      +..||+|+|+ |.+|+.++..|+..|+ ++|+|+|.+
T Consensus        20 ~~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGL-GGLGSNVAINLARAGI-GKLILVDFD   54 (200)
T ss_pred             hCCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCC
Confidence            3458999996 9999999999999986 589999996

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK08605 D-lactate dehydrogenase; Validated

Probab=97.07  E-value=0.0022  Score=60.45  Aligned_cols=68  Identities=29%  Similarity=0.382  Sum_probs=47.0

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHh-CCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEE
Q 022263           23 SESVPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        23 ~~~~~~~KI~IIGaaG~VG~~~a~~L~~-~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      ......++|+|||. |.+|..+|..|+. .+.  +|..+|.......    ..     .+..   .+++++++++||+|+
T Consensus       141 ~~~l~g~~VgIIG~-G~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~----~~-----~~~~---~~~l~ell~~aDvIv  205 (332)
T PRK08605        141 SRSIKDLKVAVIGT-GRIGLAVAKIFAKGYGS--DVVAYDPFPNAKA----AT-----YVDY---KDTIEEAVEGADIVT  205 (332)
T ss_pred             cceeCCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCccHhH----Hh-----hccc---cCCHHHHHHhCCEEE
Confidence            33456679999995 9999999998843 344  8999987542211    11     1111   236778899999999


Q ss_pred             EcCC
Q 022263          102 IPAG  105 (300)
Q Consensus       102 i~ag  105 (300)
                      ++..
T Consensus       206 l~lP  209 (332)
T PRK08605        206 LHMP  209 (332)
T ss_pred             EeCC
Confidence            9863

>PRK13243 glyoxylate reductase; Reviewed

Probab=97.07  E-value=0.0026  Score=59.98  Aligned_cols=98  Identities=21%  Similarity=0.327  Sum_probs=62.6

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +...++|+|||. |.+|+.+|..|...|.  +|..||.......  +...     ... +   .++++.+++||+|+++.
T Consensus       147 ~L~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--~~~~-----~~~-~---~~l~ell~~aDiV~l~l  212 (333)
T PRK13243        147 DVYGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEA--EKEL-----GAE-Y---RPLEELLRESDFVSLHV  212 (333)
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhh--HHHc-----CCE-e---cCHHHHHhhCCEEEEeC
Confidence            445679999995 9999999999988887  8999998542211  1111     111 1   25678899999999986


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCc
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN  149 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d  149 (300)
                      -..  +         .+..++.+  +.+....|++++|+++  ..+|
T Consensus       213 P~t--~---------~T~~~i~~--~~~~~mk~ga~lIN~aRg~~vd  246 (333)
T PRK13243        213 PLT--K---------ETYHMINE--ERLKLMKPTAILVNTARGKVVD  246 (333)
T ss_pred             CCC--h---------HHhhccCH--HHHhcCCCCeEEEECcCchhcC
Confidence            321  1         11222211  2344445799999985  4556

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.06  E-value=0.0042  Score=51.16  Aligned_cols=116  Identities=16%  Similarity=0.215  Sum_probs=68.2

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhcccc--CC---CcEEEEecCCccccccCCCCEEEEcCC
Q 022263           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--TR---SEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~--~~---~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |+|+|+ |.+|..+|..|.+.+.  ++.|++..+ ..+.+.-....  ..   ..+.......+..+..+..|+||++.-
T Consensus         1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            789996 9999999999999887  899999854 22211111110  01   011111101111235789999999853


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      ..            .    ..+..+.++.+. |++.++..-|=.+.    . +.++..  +|++++++-
T Consensus        77 a~------------~----~~~~l~~l~~~~~~~t~iv~~qNG~g~----~-~~l~~~--~~~~~v~~g  122 (151)
T PF02558_consen   77 AY------------Q----LEQALQSLKPYLDPNTTIVSLQNGMGN----E-EVLAEY--FPRPRVLGG  122 (151)
T ss_dssp             GG------------G----HHHHHHHHCTGEETTEEEEEESSSSSH----H-HHHHCH--STGSGEEEE
T ss_pred             cc------------c----hHHHHHHHhhccCCCcEEEEEeCCCCc----H-HHHHHH--cCCCcEEEE
Confidence            21            1    244566677665 67788888898873    2 333322  567788744

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.06  E-value=0.0033  Score=57.14  Aligned_cols=90  Identities=13%  Similarity=0.253  Sum_probs=56.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCC--CEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~--~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      .|||+|||+ |.+|++++..|.+.+..  .+++.+|.++..     +       ....   ..+..+.++++|+||++.-
T Consensus         3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~---~~~~~~~~~~~D~Vilavk   66 (260)
T PTZ00431          3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVY---LQSNEELAKTCDIIVLAVK   66 (260)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEE---eCChHHHHHhCCEEEEEeC
Confidence            479999995 99999999999987743  358888875421     0       1111   1234466789999999841


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                          |            ..+.++.+.+..+-++..+|.+.+-+.
T Consensus        67 ----p------------~~~~~vl~~i~~~l~~~~iIS~~aGi~   94 (260)
T PTZ00431         67 ----P------------DLAGKVLLEIKPYLGSKLLISICGGLN   94 (260)
T ss_pred             ----H------------HHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence                1            224445555554323335556666655

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.04  E-value=0.0052  Score=54.76  Aligned_cols=114  Identities=19%  Similarity=0.290  Sum_probs=65.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEecC-Cc---cccc-------c
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN-DQ---LGQA-------L   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t-~d---~~~a-------~   94 (300)
                      .+++.|+||+|.+|++++..|++.|.  +|++++.++..  ....++.+..  ..+..+... +|   .+++       +
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERF   82 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999887  89999986531  1222333221  122221111 11   1112       2


Q ss_pred             CCCCEEEEcCCCCCC-C--C---CcchhhhhhhHHH----HHHHHHHHHhhCCCeEEEEec
Q 022263           95 EDSDVVIIPAGVPRK-P--G---MTRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~-~--g---~~r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ...|+||+++|.... +  .   +...+.+..|..-    .+.+.+.+.+.++.+.++++|
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~s  143 (262)
T PRK13394         83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG  143 (262)
T ss_pred             CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEc
Confidence            358999999986421 1  1   1122334456554    566666663334445555554

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.04  E-value=0.0014  Score=56.09  Aligned_cols=108  Identities=24%  Similarity=0.361  Sum_probs=65.2

Q ss_pred             ccccc--cccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcc
Q 022263           13 AKPAG--ARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL   90 (300)
Q Consensus        13 ~~~~~--~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~   90 (300)
                      .+-.|  ...+........+|+|+|. |.+|+.+|..+..-|.  +|+.+|.......  ...+.    .+..    .++
T Consensus        19 ~~~~W~~~~~~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~----~~~~----~~l   85 (178)
T PF02826_consen   19 RNGEWASRERFPGRELRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEF----GVEY----VSL   85 (178)
T ss_dssp             HTTBHHHHTTTTBS-STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHT----TEEE----SSH
T ss_pred             HcCCCCCCcCCCccccCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hcccc----ccee----eeh
Confidence            33445  3344455556789999995 9999999999998887  9999998654222  11111    1221    367


Q ss_pred             ccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        91 ~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ++.++.||+|+++....  + +++. ++  |.       +.+....+++++|+++-
T Consensus        86 ~ell~~aDiv~~~~plt--~-~T~~-li--~~-------~~l~~mk~ga~lvN~aR  128 (178)
T PF02826_consen   86 DELLAQADIVSLHLPLT--P-ETRG-LI--NA-------EFLAKMKPGAVLVNVAR  128 (178)
T ss_dssp             HHHHHH-SEEEE-SSSS--T-TTTT-SB--SH-------HHHHTSTTTEEEEESSS
T ss_pred             hhhcchhhhhhhhhccc--c-ccce-ee--ee-------eeeeccccceEEEeccc
Confidence            78899999999986421  1 1111 11  22       22334457899999864

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.0022  Score=57.46  Aligned_cols=35  Identities=37%  Similarity=0.608  Sum_probs=30.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      |+++.|+||+|.+|..++..|++.|.  +|+++|.+.
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~   35 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAEGW--RVGAYDINE   35 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            35799999999999999999999887  899999754

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.04  E-value=0.0049  Score=56.26  Aligned_cols=97  Identities=18%  Similarity=0.273  Sum_probs=65.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCC--CEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~--~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ++||++||+ |+||.+++..|...+..  .+|...|.+..+..  ++.+.. +  +..   ++|..++.+++|+||++. 
T Consensus         1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~--~l~~~~-g--~~~---~~~~~~~~~~advv~Lav-   70 (266)
T COG0345           1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA--ALAAEY-G--VVT---TTDNQEAVEEADVVFLAV-   70 (266)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH--HHHHHc-C--Ccc---cCcHHHHHhhCCEEEEEe-
Confidence            579999996 99999999999998832  57888877543222  333322 1  111   345567889999999986 


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                         ||            ..+.++.++++...++-++|-+.=.+.
T Consensus        71 ---KP------------q~~~~vl~~l~~~~~~~lvISiaAGv~   99 (266)
T COG0345          71 ---KP------------QDLEEVLSKLKPLTKDKLVISIAAGVS   99 (266)
T ss_pred             ---Ch------------HhHHHHHHHhhcccCCCEEEEEeCCCC
Confidence               33            336677777776445666666655554

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=97.03  E-value=0.013  Score=54.58  Aligned_cols=117  Identities=16%  Similarity=0.112  Sum_probs=67.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHH------HhccccCCCcEEEEecCCccccccCCCCEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA------DVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~------dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      .|||+|+|+ |.||+.++..|...|.  ++.|++.....-.++      -+.+......+...  ..+ .+.....|+||
T Consensus         2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~--~~~-~~~~~~~D~vi   75 (305)
T PRK05708          2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIP--AET-ADAAEPIHRLL   75 (305)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccC--CCC-cccccccCEEE
Confidence            479999996 9999999999998886  899999843111111      01000000011110  111 12346789999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      ++.-.               .. ..+..+.+..+ .+++.++.+-|=++..-    .+.+.   +|.+++++-
T Consensus        76 v~vK~---------------~~-~~~al~~l~~~l~~~t~vv~lQNGv~~~e----~l~~~---~~~~~v~~g  125 (305)
T PRK05708         76 LACKA---------------YD-AEPAVASLAHRLAPGAELLLLQNGLGSQD----AVAAR---VPHARCIFA  125 (305)
T ss_pred             EECCH---------------Hh-HHHHHHHHHhhCCCCCEEEEEeCCCCCHH----HHHHh---CCCCcEEEE
Confidence            98521               11 23344455554 47888888999988422    12232   667777755

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.03  E-value=0.0036  Score=59.68  Aligned_cols=72  Identities=22%  Similarity=0.271  Sum_probs=45.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhC-CC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLN-PL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~-~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |++|+|+||+|.+|..+...++.+ .+ ..+++++......+...++.+.    ...... ..+. +.++++|+||++++
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~----~~~v~~-~~~~-~~~~~~Divf~a~~   74 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGK----EGTLQD-AFDI-DALKKLDIIITCQG   74 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCC----cceEEe-cCCh-hHhcCCCEEEECCC
Confidence            579999999999999999745544 44 3568887664433332233321    111111 1222 45789999999876

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.03  E-value=0.004  Score=53.53  Aligned_cols=104  Identities=14%  Similarity=0.123  Sum_probs=61.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~  108 (300)
                      |||+||||+|.+|+.++.....+|+  |++-+=+++.+-.+.  +....- .-..+. -+.+.+++++-|+||.+.|...
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~--~~~~i~-q~Difd-~~~~a~~l~g~DaVIsA~~~~~   74 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAAR--QGVTIL-QKDIFD-LTSLASDLAGHDAVISAFGAGA   74 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhcccc--ccceee-cccccC-hhhhHhhhcCCceEEEeccCCC
Confidence            7999999999999999999999999  888887755322111  110000 000111 1223478999999999977653


Q ss_pred             CCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                       ++..     ..-.+-...+...++.. -...++++.
T Consensus        75 -~~~~-----~~~~k~~~~li~~l~~a-gv~RllVVG  104 (211)
T COG2910          75 -SDND-----ELHSKSIEALIEALKGA-GVPRLLVVG  104 (211)
T ss_pred             -CChh-----HHHHHHHHHHHHHHhhc-CCeeEEEEc
Confidence             2211     11222344455555443 345666664

>TIGR01746 Thioester-redct thioester reductase domain

Probab=97.02  E-value=0.005  Score=57.32  Aligned_cols=109  Identities=13%  Similarity=0.071  Sum_probs=66.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHH-Hh----ccc-----cCC-CcEEEEecC----------C
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA-DV----GHI-----NTR-SEVAGYMGN----------D   88 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~-dl----~~~-----~~~-~~v~~~~~t----------~   88 (300)
                      +|.|+||+|++|++++..|+..+...+|+++.+........ .+    ...     ... ..+....+.          .
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            58899999999999999999887434788887754321111 11    100     000 134433222          1


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCe
Q 022263           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA  139 (300)
Q Consensus        89 d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a  139 (300)
                      ++.+..+++|+||++|+... ......++...|+.-...+.+.+.+.....
T Consensus        81 ~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~  130 (367)
T TIGR01746        81 EWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASGRAKP  130 (367)
T ss_pred             HHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhCCCce
Confidence            23344578999999988542 122334455678888888888877765543

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.02  E-value=0.0048  Score=57.21  Aligned_cols=64  Identities=17%  Similarity=0.232  Sum_probs=43.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC---CCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE---DSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~---~aDiVIi~a  104 (300)
                      |||+|||. |.+|+.++..|...++  +|.+||+++.+..  ++.+.    .++.   .+++++.++   ++|+||++.
T Consensus         1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~~~--~~~~~----g~~~---~~~~~e~~~~~~~~dvvi~~v   67 (301)
T PRK09599          1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEAVE--ALAEE----GATG---ADSLEELVAKLPAPRVVWLMV   67 (301)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHHHH--HHHHC----CCee---cCCHHHHHhhcCCCCEEEEEe
Confidence            58999995 9999999999999887  8999998754322  22221    1221   123444444   469998874

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.00  E-value=0.0014  Score=62.97  Aligned_cols=77  Identities=16%  Similarity=0.226  Sum_probs=47.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC-CCcEEEEecCCccccccCCCCEEEEcC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ..++||+|+||+|.+|..+...|..++.+ ||.++..++..|+...-.+... ........ ..+ .++++++|+||++.
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~-el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~~DvVf~Al  112 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDF-EITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVK-DADFSDVDAVFCCL  112 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCC-eEEEEEChhhcCCCchhhCccccCcccccee-cCC-HHHhcCCCEEEEcC
Confidence            36679999999999999999988888544 8888876544443211111000 00111010 111 13478999999976


Q ss_pred             C
Q 022263          105 G  105 (300)
Q Consensus       105 g  105 (300)
                      +
T Consensus       113 p  113 (381)
T PLN02968        113 P  113 (381)
T ss_pred             C
Confidence            5

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=96.98  E-value=0.011  Score=54.07  Aligned_cols=107  Identities=20%  Similarity=0.148  Sum_probs=65.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cH-HHHhccccCCCcEEEEecC----CccccccC--CCCEEE
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GV-AADVGHINTRSEVAGYMGN----DQLGQALE--DSDVVI  101 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~-~~dl~~~~~~~~v~~~~~t----~d~~~a~~--~aDiVI  101 (300)
                      ||.|+||+|++|..++..|.+.+.  +++++|..... .. ...+.+..   .+..+.+.    .+++++++  +.|+||
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~d~vv   75 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERIT---RVTFVEGDLRDRELLDRLFEEHKIDAVI   75 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhcccc---ceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence            689999999999999999998887  78888753211 11 11111100   12221111    12333343  699999


Q ss_pred             EcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEE
Q 022263          102 IPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (300)
Q Consensus       102 i~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~v  141 (300)
                      .+||....+.  ....+.+..|+.....+++.+.+.+...++
T Consensus        76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v  117 (328)
T TIGR01179        76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFI  117 (328)
T ss_pred             ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEE
Confidence            9998643221  223345677888888888888776544333

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.98  E-value=0.0033  Score=59.40  Aligned_cols=97  Identities=22%  Similarity=0.269  Sum_probs=61.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      +.++|.|+||+|++|+.++..|....-..+|++++++..+..  ++........+      .++++++.++|+||.+++.
T Consensus       154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~--~La~el~~~~i------~~l~~~l~~aDiVv~~ts~  225 (340)
T PRK14982        154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQ--ELQAELGGGKI------LSLEEALPEADIVVWVASM  225 (340)
T ss_pred             CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHH--HHHHHhccccH------HhHHHHHccCCEEEECCcC
Confidence            445899999889999999999975422458999987543222  22211100011      2456789999999999887


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      +...-.+..++                  .+..+++=++.|=|
T Consensus       226 ~~~~~I~~~~l------------------~~~~~viDiAvPRD  250 (340)
T PRK14982        226 PKGVEIDPETL------------------KKPCLMIDGGYPKN  250 (340)
T ss_pred             CcCCcCCHHHh------------------CCCeEEEEecCCCC
Confidence            63211111111                  35677777888887

>PRK08643 acetoin reductase; Validated

Probab=96.95  E-value=0.029  Score=49.91  Aligned_cols=115  Identities=22%  Similarity=0.280  Sum_probs=63.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cc-------cccC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LG-------QALE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~-------~a~~   95 (300)
                      .++.|+||+|.+|.+++..|++.+.  +++++|.+...  ....++.+..  ..+..+.. -++   +.       +.+.
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   78 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG   78 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3789999999999999999999887  89999986432  1222333211  11221111 011   11       1234


Q ss_pred             CCCEEEEcCCCCC-CCCC--cc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCC
Q 022263           96 DSDVVIIPAGVPR-KPGM--TR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus        96 ~aDiVIi~ag~~~-~~g~--~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                      +.|++|+++|... .+-.  +.   ...+..|..    +.+.+.+.+.+..+++.++++|..
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~  140 (256)
T PRK08643         79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQ  140 (256)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence            6899999998642 1111  11   123344543    334444445444445677777643

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.95  E-value=0.0021  Score=52.56  Aligned_cols=76  Identities=17%  Similarity=0.257  Sum_probs=51.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      +..++.|+|| |-+|..++..|...+. ++|.+++++..+.+  +|.+......+.... .+++.+.+.++|+||.+.+.
T Consensus        11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~--~l~~~~~~~~~~~~~-~~~~~~~~~~~DivI~aT~~   85 (135)
T PF01488_consen   11 KGKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPERAE--ALAEEFGGVNIEAIP-LEDLEEALQEADIVINATPS   85 (135)
T ss_dssp             TTSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHHHHH--HHHHHHTGCSEEEEE-GGGHCHHHHTESEEEE-SST
T ss_pred             CCCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHHHHH--HHHHHcCccccceee-HHHHHHHHhhCCeEEEecCC
Confidence            4459999996 9999999999999875 57999998654333  332221112344332 24666778999999998765


Q ss_pred             C
Q 022263          107 P  107 (300)
Q Consensus       107 ~  107 (300)
                      +
T Consensus        86 ~   86 (135)
T PF01488_consen   86 G   86 (135)
T ss_dssp             T
T ss_pred             C
Confidence            5

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.94  E-value=0.004  Score=50.16  Aligned_cols=72  Identities=29%  Similarity=0.394  Sum_probs=43.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC--CCcEEEEecCCccccccCCCCEEEEc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~--~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      |||+|+|++|.+|+.++..+.+.+-..=+..+|.......-.|+.+...  +..+..   ++|+++.++.+|+||-.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v---~~~l~~~~~~~DVvIDf   74 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV---TDDLEELLEEADVVIDF   74 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE---BS-HHHHTTH-SEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCccccc---chhHHHhcccCCEEEEc
Confidence            7999999779999999998888543322455666542111113322211  222332   35788889999988875

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK05717 oxidoreductase; Validated

Probab=96.94  E-value=0.0081  Score=53.61  Aligned_cols=145  Identities=14%  Similarity=0.145  Sum_probs=77.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc---cc-------cccCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LG-------QALEDS   97 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~-------~a~~~a   97 (300)
                      ++|.|+||+|.+|++++..|+..+.  +++++|.++.+.... ..+..  ..+..+.. -++   .+       +.+...
T Consensus        11 k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   85 (255)
T PRK05717         11 RVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKV-AKALG--ENAWFIAMDVADEAQVAAGVAEVLGQFGRL   85 (255)
T ss_pred             CEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHH-HHHcC--CceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4799999999999999999998886  899998764322211 01111  01111111 011   11       112357


Q ss_pred             CEEEEcCCCCCCCC-----Ccc---hhhhhhhHHHHHHHHHHHHhh--CCCeEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022263           98 DVVIIPAGVPRKPG-----MTR---DDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (300)
Q Consensus        98 DiVIi~ag~~~~~g-----~~r---~dl~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~  167 (300)
                      |++|++||......     .+.   .+.+..|..-...+.+.+.++  ...+.+|++|.....           .+ .+.
T Consensus        86 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~-----------~~-~~~  153 (255)
T PRK05717         86 DALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRAR-----------QS-EPD  153 (255)
T ss_pred             CEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhc-----------CC-CCC
Confidence            99999998753211     111   234566766555566555432  224556666543221           01 222


Q ss_pred             CcEEEeeehhHHHHHHHHHHHcC
Q 022263          168 KKLFGVTTLDVVRAKTFYAGKAN  190 (300)
Q Consensus       168 ~kviG~t~Lds~R~~~~la~~l~  190 (300)
                      ...++.+..--..+...++++++
T Consensus       154 ~~~Y~~sKaa~~~~~~~la~~~~  176 (255)
T PRK05717        154 TEAYAASKGGLLALTHALAISLG  176 (255)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhc
Confidence            23344443222345667777765

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=96.94  E-value=0.0038  Score=57.42  Aligned_cols=102  Identities=21%  Similarity=0.369  Sum_probs=68.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      +..+|+.|| -|.+|++++..|+..|+  .|+.||+...+  ..+|.+...  .+.     ..+.|..++||+||...+.
T Consensus        34 s~~~iGFIG-LG~MG~~M~~nLik~G~--kVtV~dr~~~k--~~~f~~~Ga--~v~-----~sPaeVae~sDvvitmv~~  101 (327)
T KOG0409|consen   34 SKTRIGFIG-LGNMGSAMVSNLIKAGY--KVTVYDRTKDK--CKEFQEAGA--RVA-----NSPAEVAEDSDVVITMVPN  101 (327)
T ss_pred             ccceeeEEe-eccchHHHHHHHHHcCC--EEEEEeCcHHH--HHHHHHhch--hhh-----CCHHHHHhhcCEEEEEcCC
Confidence            367999999 59999999999999998  99999986543  335665432  121     2346788999999998764


Q ss_pred             CC----------------CCCCcc-hhhhhhhHHHHHHHHHHHHhhCCCeEEE
Q 022263          107 PR----------------KPGMTR-DDLFNINAGIVKDLCSAIAKYCPNAIVN  142 (300)
Q Consensus       107 ~~----------------~~g~~r-~dl~~~N~~i~~~i~~~i~~~~p~a~vi  142 (300)
                      |.                ++|..- .|.=.-.-...++|.+.+...  +++++
T Consensus       102 ~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~--~~~~v  152 (327)
T KOG0409|consen  102 PKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK--GGRFV  152 (327)
T ss_pred             hHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC--CCeEE
Confidence            31                122211 233333456678888888754  55554

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=96.93  E-value=0.0062  Score=53.92  Aligned_cols=96  Identities=21%  Similarity=0.302  Sum_probs=67.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      |||+|||. |.+|..+...+-.... ++-+.+||.+..+..  .+......+.      .+++++.+.+.|+++.+|+  
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~--~~~~~~~~~~------~s~ide~~~~~DlvVEaAS--   69 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAK--ELEASVGRRC------VSDIDELIAEVDLVVEAAS--   69 (255)
T ss_pred             CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHHH--HHHhhcCCCc------cccHHHHhhccceeeeeCC--
Confidence            68999995 9999999877776533 467888998654333  2332221111      1356566799999999985  


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                                    .+.+++++.++-+.+.|.+++-++-=+|
T Consensus        70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad   97 (255)
T COG1712          70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD   97 (255)
T ss_pred             --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence                          3668999999999888988876654444

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=96.92  E-value=0.026  Score=50.35  Aligned_cols=117  Identities=14%  Similarity=0.183  Sum_probs=65.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc-------cCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA-------LED   96 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~~~   96 (300)
                      +|.|+||+|.+|.+++..|++.+.  +|+++|.+...  ....++........+..+.. .+|   .+.+       +..
T Consensus         4 ~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   81 (259)
T PRK12384          4 VAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR   81 (259)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            699999999999999999999887  89999986421  11112222110011222111 112   1111       246


Q ss_pred             CCEEEEcCCCCCCCC---Ccch---hhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCCC
Q 022263           97 SDVVIIPAGVPRKPG---MTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (300)
Q Consensus        97 aDiVIi~ag~~~~~g---~~r~---dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~  148 (300)
                      .|+||+++|.+....   .+..   ..+..|+.    +.+.+.+.+.+..+++.++.++...
T Consensus        82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~  143 (259)
T PRK12384         82 VDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKS  143 (259)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcc
Confidence            799999998653221   1222   22344543    3456666665555456677666543

>PRK06924 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.0073  Score=53.57  Aligned_cols=35  Identities=17%  Similarity=0.231  Sum_probs=30.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      |++|.|+||+|.+|+.++..|++++.  +|++.+.++
T Consensus         1 ~k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~   35 (251)
T PRK06924          1 MRYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE   35 (251)
T ss_pred             CcEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence            35799999999999999999999887  899998754

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=96.91  E-value=0.0052  Score=58.54  Aligned_cols=72  Identities=19%  Similarity=0.251  Sum_probs=48.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHH-hCCCC-CEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMK-LNPLV-SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~-~~~~~-~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      +||+|+||+|.||+.+...|. ...+- .+++++...+..|....+....  ..++.   .++ .+++++.|+|++++|.
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~--~~v~~---~~~-~~~~~~vDivffa~g~   74 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTT--GTLQD---AFD-IDALKALDIIITCQGG   74 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCc--ceEEc---Ccc-cccccCCCEEEEcCCH
Confidence            489999999999999998888 44442 6889998765544433332211  12222   112 2478999999999873

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.91  E-value=0.013  Score=51.77  Aligned_cols=35  Identities=26%  Similarity=0.369  Sum_probs=31.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .++|.|+||+|.+|..++..|++.|.  +|++++++.
T Consensus         5 ~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~   39 (251)
T PRK07231          5 GKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNE   39 (251)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999999999887  899999865

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=96.91  E-value=0.0031  Score=58.39  Aligned_cols=64  Identities=20%  Similarity=0.323  Sum_probs=45.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |||++||. |.||..++..|.+.++  ++.++|+++. .  .++....    ...   ..+..++.++||+||++..
T Consensus         1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~-~--~~~~~~g----~~~---~~s~~~~~~~advVi~~v~   64 (292)
T PRK15059          1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV-A--DELLSLG----AVS---VETARQVTEASDIIFIMVP   64 (292)
T ss_pred             CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh-H--HHHHHcC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence            58999995 9999999999999987  8999998642 1  2232211    111   1244567899999999853

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.91  E-value=0.0098  Score=52.75  Aligned_cols=113  Identities=15%  Similarity=0.222  Sum_probs=63.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---cccc-------cC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQA-------LE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~~   95 (300)
                      ++|.|+||+|.+|++++..|+..|.  ++++++++....  ...++....  ..+..+.. -.|   ++++       +.
T Consensus         5 ~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   80 (258)
T PRK12429          5 KVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETFG   80 (258)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999887  899999865321  222332111  12222111 111   1122       24


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +.|+||.++|......   .+   -.+.+..|..-    .+.+.+.+++... ..++++|.
T Consensus        81 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~iss  140 (258)
T PRK12429         81 GVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGG-GRIINMAS  140 (258)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCC-eEEEEEcc
Confidence            6899999998642111   11   11233344443    5566666655443 34554543

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.90  E-value=0.015  Score=51.53  Aligned_cols=116  Identities=17%  Similarity=0.211  Sum_probs=64.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc---cc-------cccC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LG-------QALE   95 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~-------~a~~   95 (300)
                      +.++|.|+||+|.+|.+++..|++.|.  +|++++.+........+....  ..+..+.. -++   .+       +.+.
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            346899999999999999999999887  899998754222222222211  11221111 011   11       2235


Q ss_pred             CCCEEEEcCCCCCCCC---C---cchhhhhhhHHHHHHHH----HHHHhhCCCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRKPG---M---TRDDLFNINAGIVKDLC----SAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~---~r~dl~~~N~~i~~~i~----~~i~~~~p~a~viv~tN  146 (300)
                      ..|++|.++|......   .   .-.+.+..|..-...+.    +.+.+....+.+++++.
T Consensus        80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS  140 (248)
T TIGR01832        80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIAS  140 (248)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            6899999998743211   1   11233455654433344    44433333566666653

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PLN02256 arogenate dehydrogenase

Probab=96.90  E-value=0.0063  Score=56.72  Aligned_cols=65  Identities=22%  Similarity=0.272  Sum_probs=44.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcccccc-CCCCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~-~~aDiVIi~a  104 (300)
                      .++||+|||+ |.+|..++..|...+.  +|+.+|.++....+.++       .+..+   ++.++.+ .++|+||++.
T Consensus        35 ~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~-------gv~~~---~~~~e~~~~~aDvVilav  100 (304)
T PLN02256         35 RKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL-------GVSFF---RDPDDFCEEHPDVVLLCT  100 (304)
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc-------CCeee---CCHHHHhhCCCCEEEEec
Confidence            3579999995 9999999999988775  89999986532112211       11221   3444554 4799999985

>PRK07574 formate dehydrogenase; Provisional

Probab=96.90  E-value=0.0063  Score=58.54  Aligned_cols=99  Identities=15%  Similarity=0.160  Sum_probs=63.0

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ...++|+|||. |.||+.+|..|...+.  +|+.+|.........   ...   .+..+   .++++.+++||+|++...
T Consensus       190 L~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~~~---~~~---g~~~~---~~l~ell~~aDvV~l~lP  257 (385)
T PRK07574        190 LEGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEEVE---QEL---GLTYH---VSFDSLVSVCDVVTIHCP  257 (385)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchhhH---hhc---Cceec---CCHHHHhhcCCEEEEcCC
Confidence            45579999995 9999999999988777  899999854211111   100   12211   356788999999999853


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCc
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN  149 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d  149 (300)
                      ..           ..+..++.  .+.+....|.+++|+++  ..+|
T Consensus       258 lt-----------~~T~~li~--~~~l~~mk~ga~lIN~aRG~iVD  290 (385)
T PRK07574        258 LH-----------PETEHLFD--ADVLSRMKRGSYLVNTARGKIVD  290 (385)
T ss_pred             CC-----------HHHHHHhC--HHHHhcCCCCcEEEECCCCchhh
Confidence            21           12222221  23344445789999885  3455

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=96.89  E-value=0.013  Score=51.85  Aligned_cols=35  Identities=26%  Similarity=0.498  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .++|.|+||+|++|+.++..|+..+.  +++++|.+.
T Consensus         3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~   37 (250)
T TIGR03206         3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNR   37 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCH
Confidence            46899999999999999999999887  899998865

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK06182 short chain dehydrogenase; Validated

Probab=96.88  E-value=0.0047  Score=55.81  Aligned_cols=113  Identities=15%  Similarity=0.135  Sum_probs=63.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCcccccc-------CCCCE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQAL-------EDSDV   99 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~-------~~aDi   99 (300)
                      .++|.|+||+|.+|..++..|...|.  +|++.+.+..+.  .++...... .+.. .....+.++.+       .+.|+
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~l--~~~~~~~~~-~~~~Dv~~~~~~~~~~~~~~~~~~~id~   77 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDKM--EDLASLGVH-PLSLDVTDEASIKAAVDTIIAEEGRIDV   77 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHhCCCe-EEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence            35899999999999999999998887  899988754221  122111100 1111 00011122222       37899


Q ss_pred             EEEcCCCCCC-C--CC---cchhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263          100 VIIPAGVPRK-P--GM---TRDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       100 VIi~ag~~~~-~--g~---~r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +|.++|.... +  ..   .....+..|..    ..+.+.+.+++... +.+++++.
T Consensus        78 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS  133 (273)
T PRK06182         78 LVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISS  133 (273)
T ss_pred             EEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcc
Confidence            9999986421 1  11   12233445543    35666666665543 44555543

>PRK07806 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.019  Score=50.76  Aligned_cols=115  Identities=17%  Similarity=0.239  Sum_probs=65.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cHHHHhccccCCCcEEEEec-CCcc---ccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMG-NDQL---GQA-------   93 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-------   93 (300)
                      .+++.|+||+|++|.+++..|+..|.  ++++++++...   ....++....  ..+..+.. -+|.   +..       
T Consensus         6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (248)
T PRK07806          6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE   81 (248)
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            35899999999999999999998887  88888774321   1112232211  11221111 0121   111       


Q ss_pred             cCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tN  146 (300)
                      +.+.|+||+++|..........+.+..|......+++.+.++.. .+.++++|.
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence            24689999998764222222233455676666666676666532 455665643

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=96.87  E-value=0.019  Score=51.01  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      |+|.|+||+|.+|..++..|...|.  +++++++++
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~   34 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQ   34 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence            6899999999999999999999887  899999864

>PRK07069 short chain dehydrogenase; Validated

Probab=96.87  E-value=0.037  Score=48.86  Aligned_cols=114  Identities=22%  Similarity=0.246  Sum_probs=64.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC-Ccc--cHHHHhccccCCCcEEEEe-cCCcc----------ccccC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP--GVAADVGHINTRSEVAGYM-GNDQL----------GQALE   95 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~-~~~--g~~~dl~~~~~~~~v~~~~-~t~d~----------~~a~~   95 (300)
                      ||.|+||+|.+|.+++..|+..|.  ++++.+.+ ...  ....++........+..+. .-+|.          .+.+.
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   78 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG   78 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            488999999999999999999887  89999986 221  1122222211110111110 00111          12245


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ..|+||..+|......   .+   -...+..|+.    ..+.+.+.+++... +.+++++.
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~ss  138 (251)
T PRK07069         79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP-ASIVNISS  138 (251)
T ss_pred             CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEecC
Confidence            6899999998643211   11   1234456665    66777777776543 45555553

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=96.87  E-value=0.00088  Score=61.67  Aligned_cols=98  Identities=26%  Similarity=0.271  Sum_probs=58.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~  108 (300)
                      |||.|+||+|++|+++...|...++  +++.++..+     .|+.+..   .+.      ++-+. .+-|+||.+|+...
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~---~~~------~~~~~-~~pd~Vin~aa~~~   63 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE---AVA------KLLEA-FKPDVVINCAAYTN   63 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH---HHH------HHHHH-H--SEEEE------
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH---HHH------HHHHH-hCCCeEeccceeec
Confidence            8999999999999999999988776  788886542     2333321   010      01011 24789999997642


Q ss_pred             CC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          109 KP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       109 ~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ..  ..+.......|......+++.+.+.  ++.+|.+|
T Consensus        64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~--~~~li~~S  100 (286)
T PF04321_consen   64 VDACEKNPEEAYAINVDATKNLAEACKER--GARLIHIS  100 (286)
T ss_dssp             HHHHHHSHHHHHHHHTHHHHHHHHHHHHC--T-EEEEEE
T ss_pred             HHhhhhChhhhHHHhhHHHHHHHHHHHHc--CCcEEEee
Confidence            11  1234455677888888999888875  34555553

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=96.86  E-value=0.0024  Score=58.39  Aligned_cols=88  Identities=14%  Similarity=0.110  Sum_probs=58.0

Q ss_pred             EEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC--CCCEEEEcCCCCCC-
Q 022263           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGVPRK-  109 (300)
Q Consensus        33 IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~--~aDiVIi~ag~~~~-  109 (300)
                      |+||+|++|++++..|...+.  ++++.....    ..|+.+.            .++.+.++  +.|+||++|+.... 
T Consensus         2 ItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~----~~Dl~~~------------~~l~~~~~~~~~d~Vih~A~~~~~~   63 (306)
T PLN02725          2 VAGHRGLVGSAIVRKLEALGF--TNLVLRTHK----ELDLTRQ------------ADVEAFFAKEKPTYVILAAAKVGGI   63 (306)
T ss_pred             cccCCCcccHHHHHHHHhCCC--cEEEeeccc----cCCCCCH------------HHHHHHHhccCCCEEEEeeeeeccc
Confidence            899999999999999988776  444443211    1233221            12223333  57999999986421 


Q ss_pred             --CCCcchhhhhhhHHHHHHHHHHHHhhCCC
Q 022263          110 --PGMTRDDLFNINAGIVKDLCSAIAKYCPN  138 (300)
Q Consensus       110 --~g~~r~dl~~~N~~i~~~i~~~i~~~~p~  138 (300)
                        ......+.+..|......+++.+++....
T Consensus        64 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~   94 (306)
T PLN02725         64 HANMTYPADFIRENLQIQTNVIDAAYRHGVK   94 (306)
T ss_pred             chhhhCcHHHHHHHhHHHHHHHHHHHHcCCC
Confidence              12234567788999999999999987643

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=96.85  E-value=0.013  Score=52.44  Aligned_cols=115  Identities=17%  Similarity=0.155  Sum_probs=65.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCcc---cc-------cc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQL---GQ-------AL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d~---~~-------a~   94 (300)
                      .++|.|+||+|.+|++++..|+..|.  +|++.+.+..+.  ...++....  ..+..+.+ -+|.   ++       .+
T Consensus        12 ~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~   87 (259)
T PRK08213         12 GKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF   87 (259)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999887  899998854321  111222111  11222111 1121   11       12


Q ss_pred             CCCCEEEEcCCCCCCCCC------cchhhhhhhHHHHHHHHHHHHhh----CCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPGM------TRDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~------~r~dl~~~N~~i~~~i~~~i~~~----~p~a~viv~tN  146 (300)
                      ...|+||+++|.......      .-.+.+..|..-...+.+.+.++    .+.+.++++|.
T Consensus        88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS  149 (259)
T PRK08213         88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS  149 (259)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            468999999986321111      11234556766666666655544    24456666654

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.85  E-value=0.0069  Score=55.35  Aligned_cols=66  Identities=23%  Similarity=0.329  Sum_probs=43.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      |||+|||. |.+|..++..|...++..+|+.+|+++....  .+.+...   ...   ..+..+ +.++|+||++.
T Consensus         1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~--~~~~~g~---~~~---~~~~~~-~~~aD~Vilav   66 (275)
T PRK08507          1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELHLK--KALELGL---VDE---IVSFEE-LKKCDVIFLAI   66 (275)
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHH--HHHHCCC---Ccc---cCCHHH-HhcCCEEEEeC
Confidence            58999995 9999999999998886457889998643211  1221111   111   123334 44699999985

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.85  E-value=0.0042  Score=57.30  Aligned_cols=72  Identities=22%  Similarity=0.347  Sum_probs=49.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ..||.|+|| |.+|.++++.|...+. .+|.++|++..  +..+.++.+...  ...... .+++++.++++|+||.+.
T Consensus       127 ~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~~--~~~~~~-~~~~~~~~~~aDiVInaT  200 (284)
T PRK12549        127 LERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARFP--AARATA-GSDLAAALAAADGLVHAT  200 (284)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhCC--CeEEEe-ccchHhhhCCCCEEEECC
Confidence            358999996 9999999999998874 57999999754  333445543221  122211 234445789999999983

>PRK07102 short chain dehydrogenase; Provisional

Probab=96.84  E-value=0.016  Score=51.26  Aligned_cols=116  Identities=18%  Similarity=0.077  Sum_probs=64.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEecC-Cc---cccc----cCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGN-DQ---LGQA----LEDS   97 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t-~d---~~~a----~~~a   97 (300)
                      |++|.|+||+|.+|..++..|++.|.  +|++.|+++...  ...++.... ...+..+... +|   .++.    .+..
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   77 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALP   77 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence            46899999999999999999999887  899999865321  122222211 1122222110 11   1112    2345


Q ss_pred             CEEEEcCCCCCC---CCCcch---hhhhhhHHHHHHHHHHHHhh---CCCeEEEEecC
Q 022263           98 DVVIIPAGVPRK---PGMTRD---DLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (300)
Q Consensus        98 DiVIi~ag~~~~---~g~~r~---dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (300)
                      |++|+++|....   .+.+..   +.+..|..-...+.+.+.++   ...+.++++|-
T Consensus        78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  135 (243)
T PRK07102         78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISS  135 (243)
T ss_pred             CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence            999999885321   122222   24455665545455544433   23455666653

>PRK06180 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.018  Score=52.15  Aligned_cols=113  Identities=13%  Similarity=0.119  Sum_probs=62.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc---cccc-------cCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQA-------LED   96 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~~~   96 (300)
                      +++|.|+||+|.+|++++..|+..|.  +|++++++.....  ++..... ..+..+.. -+|   ..+.       +..
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~--~l~~~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~~~   78 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAARA--DFEALHP-DRALARLLDVTDFDAIDAVVADAEATFGP   78 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHHH--HHHhhcC-CCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            35799999999999999999999887  8999998643211  2222111 11211110 011   1112       236


Q ss_pred             CCEEEEcCCCCCC-C--CCcc---hhhhhhhHHHHHHHHHH----HHhhCCCeEEEEecC
Q 022263           97 SDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (300)
Q Consensus        97 aDiVIi~ag~~~~-~--g~~r---~dl~~~N~~i~~~i~~~----i~~~~p~a~viv~tN  146 (300)
                      .|+||.+||.... +  ..+.   .+.+..|..-...+.+.    +++.. .+.+|++|.
T Consensus        79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~iSS  137 (277)
T PRK06180         79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARR-RGHIVNITS  137 (277)
T ss_pred             CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CCEEEEEec
Confidence            8999999987421 1  1122   22355666555555554    33333 345665653

>PRK12829 short chain dehydrogenase; Provisional

Probab=96.80  E-value=0.019  Score=51.13  Aligned_cols=36  Identities=28%  Similarity=0.431  Sum_probs=32.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +.+++.|+||+|.+|+.++..|+..+.  +|++++.++
T Consensus        10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~   45 (264)
T PRK12829         10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE   45 (264)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            446999999999999999999999887  899999864

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=96.80  E-value=0.0071  Score=55.20  Aligned_cols=69  Identities=17%  Similarity=0.222  Sum_probs=44.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCC-CCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ||||+|||. |.+|..++..+...+ -..-+.++|.++.+..  ++.+..   ....+   +++++.+.++|+|++++.
T Consensus         1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~--~~a~~~---~~~~~---~~~~ell~~~DvVvi~a~   70 (265)
T PRK13304          1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEKAE--NLASKT---GAKAC---LSIDELVEDVDLVVECAS   70 (265)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHHHH--HHHHhc---CCeeE---CCHHHHhcCCCEEEEcCC
Confidence            589999995 999999998887754 2223567887643222  222211   12222   356666799999999963

>PLN02996 fatty acyl-CoA reductase

Probab=96.79  E-value=0.016  Score=57.61  Aligned_cols=107  Identities=19%  Similarity=0.134  Sum_probs=66.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhC-CCCCEEEEEecCCcc--cH-H--HHhccc------------cC----CCcEEEEe
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTP--GV-A--ADVGHI------------NT----RSEVAGYM   85 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~-~~~~el~L~D~~~~~--g~-~--~dl~~~------------~~----~~~v~~~~   85 (300)
                      .+.|.|+||+|++|++++..|+.. +-.++|+++.+.+..  .+ .  .++.+.            ..    ..++..+.
T Consensus        11 ~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i~   90 (491)
T PLN02996         11 NKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPVP   90 (491)
T ss_pred             CCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEEe
Confidence            348999999999999999887754 345577777764321  10 0  011110            00    02344433


Q ss_pred             cCC----------c-cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh
Q 022263           86 GND----------Q-LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY  135 (300)
Q Consensus        86 ~t~----------d-~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~  135 (300)
                      |.-          + +++.++++|+||++|+... ...+..+....|+.....+.+.+.+.
T Consensus        91 GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~  150 (491)
T PLN02996         91 GDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKC  150 (491)
T ss_pred             cccCCcCCCCChHHHHHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            321          1 2345689999999998643 22344556778999999988888764

>PRK07814 short chain dehydrogenase; Provisional

Probab=96.76  E-value=0.013  Score=52.66  Aligned_cols=116  Identities=17%  Similarity=0.169  Sum_probs=64.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCccc---cc-------
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQLG---QA-------   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d~~---~a-------   93 (300)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++...  ....++....  ..+..+.. -++.+   ++       
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   84 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA   84 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999887  89999986432  1122232211  12222111 11211   11       


Q ss_pred             cCCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHHHHHH----HHHHhhCCCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLC----SAIAKYCPNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~~~i~----~~i~~~~p~a~viv~tN  146 (300)
                      +...|+||..||......   .+   -.+.+..|......+.    +.+.+..+.+.+++++.
T Consensus        85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS  147 (263)
T PRK07814         85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISS  147 (263)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence            247899999998632211   11   1223444544444444    44444455566766664

>PRK08278 short chain dehydrogenase; Provisional

Probab=96.76  E-value=0.029  Score=50.80  Aligned_cols=156  Identities=15%  Similarity=0.191  Sum_probs=82.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---------cHHHHhccccCCCcEEEEec----CCcccccc-
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---------GVAADVGHINTRSEVAGYMG----NDQLGQAL-   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---------g~~~dl~~~~~~~~v~~~~~----t~d~~~a~-   94 (300)
                      +++.|+||+|.+|..++..|++.|.  +|++++.+...         ..+.++....  ..+..+..    ..+.++.+ 
T Consensus         7 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~   82 (273)
T PRK08278          7 KTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAAVA   82 (273)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHH
Confidence            4799999999999999999999887  89999985421         1112222111  11221111    11111222 


Q ss_pred             ------CCCCEEEEcCCCCCC-C--CCcch---hhhhhhHHHH----HHHHHHHHhhCCCeEEEEecCCCcccHHHHHHH
Q 022263           95 ------EDSDVVIIPAGVPRK-P--GMTRD---DLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (300)
Q Consensus        95 ------~~aDiVIi~ag~~~~-~--g~~r~---dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~  158 (300)
                            ...|++|++||.... +  ..+..   ..+..|+.-.    +.+.+.+.+. ..+.+++++.+...        
T Consensus        83 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~-~~g~iv~iss~~~~--------  153 (273)
T PRK08278         83 KAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKS-ENPHILTLSPPLNL--------  153 (273)
T ss_pred             HHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhc-CCCEEEEECCchhc--------
Confidence                  368999999986421 1  11221   2334454433    3333444332 34666666643321        


Q ss_pred             HHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       159 ~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                        ....++....++.+..--.++...++++++  +..|++..+
T Consensus       154 --~~~~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v~~i  192 (273)
T PRK08278        154 --DPKWFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAVNAL  192 (273)
T ss_pred             --cccccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence              000023344555554334456677777775  355666555

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.75  E-value=0.0074  Score=52.75  Aligned_cols=35  Identities=29%  Similarity=0.438  Sum_probs=31.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .++|.|+||+|.+|..++..|+++|.  +++++|++.
T Consensus         7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~   41 (239)
T PRK12828          7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGA   41 (239)
T ss_pred             CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCCh
Confidence            35899999999999999999999887  899999865

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=96.74  E-value=0.011  Score=54.01  Aligned_cols=98  Identities=19%  Similarity=0.242  Sum_probs=61.5

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC-CCCEEEEcCCCCCC
Q 022263           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPAGVPRK  109 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~-~aDiVIi~ag~~~~  109 (300)
                      |+|+||+|+||+++...|...++  +|.++-++..+...  ..+.    .+...   +.+.+... ++|+||..||.|--
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~~--~~~~----~v~~~---~~~~~~~~~~~DavINLAG~~I~   69 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKASQ--NLHP----NVTLW---EGLADALTLGIDAVINLAGEPIA   69 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchhh--hcCc----ccccc---chhhhcccCCCCEEEECCCCccc
Confidence            67999999999999999999888  88888775533221  1121    11111   11122233 79999999998743


Q ss_pred             CC---C-cchhhhhhhHHHHHHHHHHHHhhCCCe
Q 022263          110 PG---M-TRDDLFNINAGIVKDLCSAIAKYCPNA  139 (300)
Q Consensus       110 ~g---~-~r~dl~~~N~~i~~~i~~~i~~~~p~a  139 (300)
                      ..   . ....+...-+...+.+.+.|.+.....
T Consensus        70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P  103 (297)
T COG1090          70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETKP  103 (297)
T ss_pred             cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCC
Confidence            22   1 122344444566778888888665433

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.74  E-value=0.047  Score=48.26  Aligned_cols=35  Identities=37%  Similarity=0.490  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+++.|+||+|.+|.+++..|+..+.  +++++|++.
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~   40 (250)
T PRK07774          6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINA   40 (250)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999999886  899999864

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.73  E-value=0.0039  Score=55.54  Aligned_cols=72  Identities=22%  Similarity=0.295  Sum_probs=46.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCC--ccccc-cCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND--QLGQA-LEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~--d~~~a-~~~aDiVIi~ag  105 (300)
                      |+|.|+|+ |.+|+++|..|...|.  +++++|.++..... -+.+. ....+-.-.+++  -++++ +.++|++|.+-|
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~-~~~~~-~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~   75 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEERVEE-FLADE-LDTHVVIGDATDEDVLEEAGIDDADAVVAATG   75 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHHHHH-Hhhhh-cceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence            68999996 9999999999999988  99999997642221 01111 111111111121  13333 789999998754

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=96.73  E-value=0.023  Score=50.63  Aligned_cols=111  Identities=21%  Similarity=0.252  Sum_probs=63.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec----CCcccc-------ccC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG----NDQLGQ-------ALE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~----t~d~~~-------a~~   95 (300)
                      .++.|+||+|.+|.+++..|+..|.  +++++|.+.....  ..++..     .+..+..    ..+.++       .+.
T Consensus         7 ~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (257)
T PRK07067          7 KVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGP-----AAIAVSLDVTRQDSIDRIVAAAVERFG   79 (257)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCC-----ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999887  8999998653221  112211     1111110    111112       234


Q ss_pred             CCCEEEEcCCCCCC-CC--Cc---chhhhhhhHHHHHHHHHHHH----hhCCCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRK-PG--MT---RDDLFNINAGIVKDLCSAIA----KYCPNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~-~g--~~---r~dl~~~N~~i~~~i~~~i~----~~~p~a~viv~tN  146 (300)
                      ..|++|+++|.... +-  .+   -.+.+..|..-...+.+.+.    +..+.+.+++++.
T Consensus        80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  140 (257)
T PRK07067         80 GIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMAS  140 (257)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            68999999986421 11  11   12234556554444444443    3334466666654

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=96.72  E-value=0.016  Score=56.22  Aligned_cols=105  Identities=17%  Similarity=0.255  Sum_probs=61.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC--CccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN--DQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t--~d~~~a~~~aDiVIi~ag  105 (300)
                      +++|.|+||+|.+|.+++..|++.|.  +++++|.++.+.. ..+.+............+  ++..+.+.+.|++|+.||
T Consensus       178 gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~l~-~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnAG  254 (406)
T PRK07424        178 GKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDKIT-LEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINHG  254 (406)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHH-HHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECCC
Confidence            45899999999999999999999887  8999987542111 111111111011111111  123345788999999998


Q ss_pred             CCCCCCCcc---hhhhhhhHH----HHHHHHHHHHhh
Q 022263          106 VPRKPGMTR---DDLFNINAG----IVKDLCSAIAKY  135 (300)
Q Consensus       106 ~~~~~g~~r---~dl~~~N~~----i~~~i~~~i~~~  135 (300)
                      .......+.   .+.++.|..    +++.+.+.+++.
T Consensus       255 i~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~  291 (406)
T PRK07424        255 INVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTN  291 (406)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            753322222   234455654    455555555543

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=96.72  E-value=0.011  Score=60.71  Aligned_cols=90  Identities=18%  Similarity=0.157  Sum_probs=60.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcccccc--CCCCEEEEc
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL--EDSDVVIIP  103 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~--~~aDiVIi~  103 (300)
                      ...|||.|+||+|++|++++..|...++  ++... .       .|+.+..            .+...+  .+.|+||++
T Consensus       378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~-------~~l~d~~------------~v~~~i~~~~pd~Vih~  435 (668)
T PLN02260        378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-K-------GRLEDRS------------SLLADIRNVKPTHVFNA  435 (668)
T ss_pred             CCCceEEEECCCchHHHHHHHHHHhCCC--eEEee-c-------cccccHH------------HHHHHHHhhCCCEEEEC
Confidence            3568999999999999999999988775  55211 1       0111110            001112  268999999


Q ss_pred             CCCCCCCC-----CcchhhhhhhHHHHHHHHHHHHhhCC
Q 022263          104 AGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCP  137 (300)
Q Consensus       104 ag~~~~~g-----~~r~dl~~~N~~i~~~i~~~i~~~~p  137 (300)
                      |+....+.     .+..+.+..|+.....+++.+++.+.
T Consensus       436 Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~  474 (668)
T PLN02260        436 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL  474 (668)
T ss_pred             CcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC
Confidence            98643221     13455678899999999999998754

>PRK06482 short chain dehydrogenase; Provisional

Probab=96.71  E-value=0.082  Score=47.67  Aligned_cols=111  Identities=15%  Similarity=0.034  Sum_probs=62.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCcc---cc-------ccCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQL---GQ-------ALEDS   97 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~-------a~~~a   97 (300)
                      ++|.|+||+|++|++++..|+..+.  .+++.+.+...  ..++.... ...+..+.. -+|.   ++       .+...
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~~--~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   77 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPDA--LDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI   77 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999887  78888875321  11221111 112222111 1121   11       23468


Q ss_pred             CEEEEcCCCCCCCC-C--cc---hhhhhhhHHHHHHHHHHH----HhhCCCeEEEEec
Q 022263           98 DVVIIPAGVPRKPG-M--TR---DDLFNINAGIVKDLCSAI----AKYCPNAIVNMIS  145 (300)
Q Consensus        98 DiVIi~ag~~~~~g-~--~r---~dl~~~N~~i~~~i~~~i----~~~~p~a~viv~t  145 (300)
                      |+||++||...... +  +.   ...+..|..-...+.+.+    ++.+ .+.+|++|
T Consensus        78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~s  134 (276)
T PRK06482         78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQG-GGRIVQVS  134 (276)
T ss_pred             CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEc
Confidence            99999998753211 1  11   234456766666666665    3333 34555554

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=96.71  E-value=0.0044  Score=61.40  Aligned_cols=96  Identities=17%  Similarity=0.182  Sum_probs=60.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccc----cCCCcEEEEecCCccccccC---CCCE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----NTRSEVAGYMGNDQLGQALE---DSDV   99 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~----~~~~~v~~~~~t~d~~~a~~---~aDi   99 (300)
                      .+++|++|| .|.||+.+|..|+..|+  +|..||++..+..  ++.+.    ... .+..   ..++++..+   .+|+
T Consensus         5 ~~~~IG~IG-LG~MG~~mA~nL~~~G~--~V~V~NRt~~k~~--~l~~~~~~~Ga~-~~~~---a~s~~e~v~~l~~~dv   75 (493)
T PLN02350          5 ALSRIGLAG-LAVMGQNLALNIAEKGF--PISVYNRTTSKVD--ETVERAKKEGNL-PLYG---FKDPEDFVLSIQKPRS   75 (493)
T ss_pred             CCCCEEEEe-eHHHHHHHHHHHHhCCC--eEEEECCCHHHHH--HHHHhhhhcCCc-cccc---CCCHHHHHhcCCCCCE
Confidence            456899999 59999999999999998  9999998654332  22221    100 1111   234445554   4999


Q ss_pred             EEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecC
Q 022263          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN  146 (300)
Q Consensus       100 VIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tN  146 (300)
                      ||++...               -+.++++...+... .|..++|-.||
T Consensus        76 Ii~~v~~---------------~~aV~~Vi~gl~~~l~~G~iiID~sT  108 (493)
T PLN02350         76 VIILVKA---------------GAPVDQTIKALSEYMEPGDCIIDGGN  108 (493)
T ss_pred             EEEECCC---------------cHHHHHHHHHHHhhcCCCCEEEECCC
Confidence            9998532               23344444444444 46777777765

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.70  E-value=0.018  Score=50.44  Aligned_cols=114  Identities=19%  Similarity=0.189  Sum_probs=63.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEecC-Cc---cccc-------cC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGN-DQ---LGQA-------LE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t-~d---~~~a-------~~   95 (300)
                      ++|.|+||+|.+|+.++..|+..+.  +|+++++++...  ...++.+.   ..+..+.++ +|   +.+.       +.
T Consensus         7 ~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG   81 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999998887  899999865321  12233221   122222111 11   1122       34


Q ss_pred             CCCEEEEcCCCCCCC---CCcch---hhhhhhHHHHHHHHHHHHhh--CCCeEEEEecCC
Q 022263           96 DSDVVIIPAGVPRKP---GMTRD---DLFNINAGIVKDLCSAIAKY--CPNAIVNMISNP  147 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~---g~~r~---dl~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP  147 (300)
                      ..|+||.++|.....   ..+..   +.+..|+.-...+.+.+.+.  ...+.+++++..
T Consensus        82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~  141 (237)
T PRK07326         82 GLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL  141 (237)
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence            799999998864321   11221   23444554444444443322  234566666643

>PLN02712 arogenate dehydrogenase

Probab=96.70  E-value=0.011  Score=60.98  Aligned_cols=66  Identities=18%  Similarity=0.189  Sum_probs=45.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcccccc-CCCCEEEEcC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPA  104 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~-~~aDiVIi~a  104 (300)
                      .++|||+|||. |.+|..++..|...++  +|..+|.+.....+.++       .+..+   ++.++.+ +++|+||++.
T Consensus        50 ~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~-------Gv~~~---~d~~e~~~~~aDvViLav  116 (667)
T PLN02712         50 TTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL-------GVSFF---LDPHDLCERHPDVILLCT  116 (667)
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc-------CCEEe---CCHHHHhhcCCCEEEEcC
Confidence            35689999995 9999999999998886  89999986422121111       12222   2444534 5799999984

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=96.70  E-value=0.0061  Score=57.28  Aligned_cols=107  Identities=25%  Similarity=0.426  Sum_probs=66.8

Q ss_pred             ccccccc-cCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccc
Q 022263           13 AKPAGAR-GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLG   91 (300)
Q Consensus        13 ~~~~~~~-~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~   91 (300)
                      ..-.|.+ .|...+...++|+|||. |.+|+.++..+..-|.  +|..||....+....  .+     ....   -.+++
T Consensus       126 ~~g~W~~~~~~g~el~gkTvGIiG~-G~IG~~va~~l~afgm--~v~~~d~~~~~~~~~--~~-----~~~~---~~~Ld  192 (324)
T COG0111         126 RRGEWDRKAFRGTELAGKTVGIIGL-GRIGRAVAKRLKAFGM--KVIGYDPYSPRERAG--VD-----GVVG---VDSLD  192 (324)
T ss_pred             HcCCccccccccccccCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCCchhhhc--cc-----ccee---cccHH
Confidence            4456666 35444556779999995 9999999999998888  999999833221111  11     1111   23577


Q ss_pred             cccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        92 ~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +.++.||+|++..  |..+. +|        .++.  .+.+.+-.|.+++||++
T Consensus       193 ~lL~~sDiv~lh~--PlT~e-T~--------g~i~--~~~~a~MK~gailIN~a  233 (324)
T COG0111         193 ELLAEADILTLHL--PLTPE-TR--------GLIN--AEELAKMKPGAILINAA  233 (324)
T ss_pred             HHHhhCCEEEEcC--CCCcc-hh--------cccC--HHHHhhCCCCeEEEECC
Confidence            8899999999974  22221 22        1111  12233334788998875

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=96.70  E-value=0.041  Score=48.31  Aligned_cols=35  Identities=34%  Similarity=0.473  Sum_probs=29.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+++.|+||+|.+|+.++..|+..+.  .+.+.+.+.
T Consensus         6 ~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~   40 (245)
T PRK12936          6 GRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRV   40 (245)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCH
Confidence            45899999999999999999999886  788877643

>PRK07856 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.016  Score=51.58  Aligned_cols=35  Identities=23%  Similarity=0.252  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+++.|+||+|.+|..++..|+..+.  +|++.|.+.
T Consensus         6 ~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~   40 (252)
T PRK07856          6 GRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRA   40 (252)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            45899999999999999999999887  899998854

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.68  E-value=0.0047  Score=54.54  Aligned_cols=95  Identities=17%  Similarity=0.150  Sum_probs=58.5

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCccccccCCCCEEEEcCCCCCC
Q 022263           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPAGVPRK  109 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~~~aDiVIi~ag~~~~  109 (300)
                      |+|+||+|++|+.++..|...+.  +|..+=++........+.+.... .+.. +.....+.++|+|+|.||++.+... 
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g~~-vv~~d~~~~~~l~~al~g~d~v~~~~~~~~-   76 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALGAE-VVEADYDDPESLVAALKGVDAVFSVTPPSH-   76 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTTTE-EEES-TT-HHHHHHHHTTCSEEEEESSCSC-
T ss_pred             CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhcccce-EeecccCCHHHHHHHHcCCceEEeecCcch-
Confidence            78999999999999999998776  67777665432233334433211 1111 1011245678999999999866432 


Q ss_pred             CCCcchhhhhhhHHHHHHHHHHHHhhCCC
Q 022263          110 PGMTRDDLFNINAGIVKDLCSAIAKYCPN  138 (300)
Q Consensus       110 ~g~~r~dl~~~N~~i~~~i~~~i~~~~p~  138 (300)
                               ..-.+..+.+++...+.+-+
T Consensus        77 ---------~~~~~~~~~li~Aa~~agVk   96 (233)
T PF05368_consen   77 ---------PSELEQQKNLIDAAKAAGVK   96 (233)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHT-S
T ss_pred             ---------hhhhhhhhhHHHhhhccccc
Confidence                     12234456677777776633

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.68  E-value=0.029  Score=49.94  Aligned_cols=116  Identities=17%  Similarity=0.144  Sum_probs=64.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---ccc-------cc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQ-------AL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~-------a~   94 (300)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.++.+.  ...++.+..  ..+..+.. -+|   .++       .+
T Consensus        10 ~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (255)
T PRK07523         10 GRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999999887  899999864321  112222211  11221110 011   111       23


Q ss_pred             CCCCEEEEcCCCCCC-CC--Cc---chhhhhhhHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 022263           95 EDSDVVIIPAGVPRK-PG--MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~-~g--~~---r~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  147 (300)
                      ...|++|+.+|.... +-  .+   -.+.+..|+.-...+.+.+.++   ...+.++++|..
T Consensus        86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~  147 (255)
T PRK07523         86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASV  147 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccc
Confidence            458999999986421 11  11   1234456665444444444433   234566666643

>PLN03139 formate dehydrogenase; Provisional

Probab=96.67  E-value=0.014  Score=56.26  Aligned_cols=100  Identities=20%  Similarity=0.216  Sum_probs=63.7

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ....++|+|||. |.||..++..|...|.  +|..+|.........  .+.    .+..   ..++++.+++||+|++..
T Consensus       196 ~L~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~----g~~~---~~~l~ell~~sDvV~l~l  263 (386)
T PLN03139        196 DLEGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KET----GAKF---EEDLDAMLPKCDVVVINT  263 (386)
T ss_pred             CCCCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhc----Ccee---cCCHHHHHhhCCEEEEeC
Confidence            446679999995 9999999999987776  899999754221111  111    1221   136778899999999985


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCc
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN  149 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d  149 (300)
                      ...           ..+..++.  .+.+....|++++|+++  ..+|
T Consensus       264 Plt-----------~~T~~li~--~~~l~~mk~ga~lIN~aRG~iVD  297 (386)
T PLN03139        264 PLT-----------EKTRGMFN--KERIAKMKKGVLIVNNARGAIMD  297 (386)
T ss_pred             CCC-----------HHHHHHhC--HHHHhhCCCCeEEEECCCCchhh
Confidence            211           12222331  23455556899999884  3455

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=96.67  E-value=0.027  Score=51.44  Aligned_cols=116  Identities=17%  Similarity=0.178  Sum_probs=71.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCCcEEEEe----cCCcc-------cc
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM----GNDQL-------GQ   92 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~----~t~d~-------~~   92 (300)
                      ..++.+.|+||++-+|..+|..|+.+|.  .|+|+.+++  ....+.++++... ..+..+.    .+++.       .+
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~~-v~v~vi~~DLs~~~~~~~l~~~l~~   80 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKTG-VEVEVIPADLSDPEALERLEDELKE   80 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhhC-ceEEEEECcCCChhHHHHHHHHHHh
Confidence            3456899999999999999999999998  999999865  3445556665431 1122211    11111       11


Q ss_pred             ccCCCCEEEEcCCCCCCCC------CcchhhhhhhHHH----HHHHHHHHHhhCCCeEEEEec
Q 022263           93 ALEDSDVVIIPAGVPRKPG------MTRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        93 a~~~aDiVIi~ag~~~~~g------~~r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ..-..|+.|..||...-..      .+-.+++.-|+--    .+.+.+.+.+.. .+.||+++
T Consensus        81 ~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~  142 (265)
T COG0300          81 RGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIG  142 (265)
T ss_pred             cCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEe
Confidence            2236999999999753221      1234566666544    455566666544 45556654

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.66  E-value=0.012  Score=55.36  Aligned_cols=69  Identities=17%  Similarity=0.203  Sum_probs=47.4

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      ...+.+||+|||. |.+|.+++..|...++  +++.++....+..  +.....   .+..    .+..+++++||+|+++
T Consensus        13 ~~L~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~--~~A~~~---G~~~----~s~~eaa~~ADVVvLa   80 (330)
T PRK05479         13 SLIKGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKSW--KKAEAD---GFEV----LTVAEAAKWADVIMIL   80 (330)
T ss_pred             hhhCCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhhH--HHHHHC---CCee----CCHHHHHhcCCEEEEc
Confidence            3345679999995 9999999999999887  8888776432221  111111   1111    2456889999999998


Q ss_pred             C
Q 022263          104 A  104 (300)
Q Consensus       104 a  104 (300)
                      .
T Consensus        81 V   81 (330)
T PRK05479         81 L   81 (330)
T ss_pred             C
Confidence            5

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=96.64  E-value=0.026  Score=50.01  Aligned_cols=37  Identities=30%  Similarity=0.396  Sum_probs=32.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+.++|.|+||+|++|.+++..|+..+.  +|+++|++.
T Consensus        10 ~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~   46 (247)
T PRK08945         10 LKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTE   46 (247)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCH
Confidence            3456899999999999999999999886  899999865

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=96.63  E-value=0.0075  Score=60.40  Aligned_cols=104  Identities=22%  Similarity=0.320  Sum_probs=64.1

Q ss_pred             ccccc-CCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcccccc
Q 022263           16 AGARG-YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL   94 (300)
Q Consensus        16 ~~~~~-~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~   94 (300)
                      -|.|. |...+...++|+|||. |.+|+.+|..|...|.  +++.||.........++       .+..   ..++++.+
T Consensus       125 ~W~~~~~~g~~l~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~---~~~l~ell  191 (525)
T TIGR01327       125 EWDRKAFMGTELYGKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQL-------GVEL---VDDLDELL  191 (525)
T ss_pred             CccccccCccccCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEE---cCCHHHHH
Confidence            35443 3333455679999995 9999999999987777  89999974322222221       1121   13577889


Q ss_pred             CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ++||+|++.....  + ++        ..++.  .+.+....|++++|+++
T Consensus       192 ~~aDvV~l~lPlt--~-~T--------~~li~--~~~l~~mk~ga~lIN~a  229 (525)
T TIGR01327       192 ARADFITVHTPLT--P-ET--------RGLIG--AEELAKMKKGVIIVNCA  229 (525)
T ss_pred             hhCCEEEEccCCC--h-hh--------ccCcC--HHHHhcCCCCeEEEEcC
Confidence            9999999985321  1 11        11111  13344445788888874

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=96.63  E-value=0.012  Score=54.91  Aligned_cols=119  Identities=21%  Similarity=0.293  Sum_probs=69.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc-ccH---HHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGV---AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~-~g~---~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      |||+|+|+ |.||+.++..|.+.+.  ++.++-+.+. +..   -+.+.+..........  +.+..+....+|+||++.
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~--~~~~~~~~~~~Dlviv~v   75 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVV--AATDAEALGPADLVIVTV   75 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCccccccc--cccChhhcCCCCEEEEEe
Confidence            79999996 9999999999999883  6666655432 111   0111111110011111  112235678999999985


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEE-Eeee
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF-GVTT  175 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kvi-G~t~  175 (300)
                      -..                -..+..+.+..+. |+++++..=|=...     .+..++.  +|+++++ |+|.
T Consensus        76 Ka~----------------q~~~al~~l~~~~~~~t~vl~lqNG~g~-----~e~l~~~--~~~~~il~G~~~  125 (307)
T COG1893          76 KAY----------------QLEEALPSLAPLLGPNTVVLFLQNGLGH-----EEELRKI--LPKETVLGGVTT  125 (307)
T ss_pred             ccc----------------cHHHHHHHhhhcCCCCcEEEEEeCCCcH-----HHHHHHh--CCcceEEEEEee
Confidence            321                1355666666665 57788888898883     2333332  5566555 6654

>PRK05875 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.041  Score=49.60  Aligned_cols=35  Identities=23%  Similarity=0.273  Sum_probs=31.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .++|.|+||+|.+|++++..|+..|.  +|++++.+.
T Consensus         7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~   41 (276)
T PRK05875          7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNP   41 (276)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            36899999999999999999999887  899999754

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.62  E-value=0.0084  Score=54.21  Aligned_cols=69  Identities=19%  Similarity=0.230  Sum_probs=45.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |||+|||+ |.+|++++..|...++ ..++.++|.+..+.  .++.+.. . .++..   ++..+.++++|+||++..
T Consensus         1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~--~~l~~~~-~-~~~~~---~~~~~~~~~aDvVilav~   70 (258)
T PRK06476          1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQIA--ARLAERF-P-KVRIA---KDNQAVVDRSDVVFLAVR   70 (258)
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHHH--HHHHHHc-C-CceEe---CCHHHHHHhCCEEEEEeC
Confidence            58999995 9999999999988774 24567777654322  2222211 1 12221   345567789999999853

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.14  Score=45.66  Aligned_cols=37  Identities=32%  Similarity=0.385  Sum_probs=30.8

Q ss_pred             CCCceEEEEcCCC-ChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           26 VPDRKVAVLGAAG-GIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        26 ~~~~KI~IIGaaG-~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+.+++.|+||+| -+|..++..|+..|.  +|++.|.+.
T Consensus        15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~   52 (262)
T PRK07831         15 LAGKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHE   52 (262)
T ss_pred             cCCCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            3446899999877 599999999999887  799998754

>PLN00016 RNA-binding protein; Provisional

Probab=96.61  E-value=0.018  Score=54.95  Aligned_cols=36  Identities=22%  Similarity=0.252  Sum_probs=32.1

Q ss_pred             CCceEEEE----cCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVL----GAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~II----GaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .++||.|+    ||+|++|++++..|...|+  +|+++++..
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~   90 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGK   90 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCC
Confidence            45689999    9999999999999999887  999999864

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.60  E-value=0.0057  Score=60.30  Aligned_cols=100  Identities=16%  Similarity=0.209  Sum_probs=60.3

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC-CCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~  108 (300)
                      +|+||| .|.||.++|..|+..++  +|.+||+++.+.+  ++.+... ...+.......++.+.++++|+|+++.-.  
T Consensus         1 ~IG~IG-LG~MG~~mA~nL~~~G~--~V~v~drt~~~~~--~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~--   73 (467)
T TIGR00873         1 DIGVIG-LAVMGSNLALNMADHGF--TVSVYNRTPEKTD--EFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKA--   73 (467)
T ss_pred             CEEEEe-eHHHHHHHHHHHHhcCC--eEEEEeCCHHHHH--HHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCC--
Confidence            489999 59999999999999998  8999998654332  2322100 00122221011222345679999887521  


Q ss_pred             CCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecC--CCc
Q 022263          109 KPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN--PVN  149 (300)
Q Consensus       109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tN--P~d  149 (300)
                        +           +.+.++.+.+..+ .++.++|-.+|  |.+
T Consensus        74 --~-----------~~v~~Vi~~l~~~L~~g~iIID~gns~~~~  104 (467)
T TIGR00873        74 --G-----------APVDAVINQLLPLLEKGDIIIDGGNSHYPD  104 (467)
T ss_pred             --c-----------HHHHHHHHHHHhhCCCCCEEEECCCcCHHH
Confidence              1           2334444555554 36778887876  444

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.60  E-value=0.015  Score=53.46  Aligned_cols=65  Identities=23%  Similarity=0.279  Sum_probs=43.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-----HHHhccccCCCcEEEEecCCccccccCCCCEEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----AADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-----~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      +++|+|+|. |.||..++..|...++  .+..++.+...+.     .+++.+..    .     .+...++.++||+||+
T Consensus         3 ~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~lgv~d~~----~-----~~~~~~~~~~aD~Viv   70 (279)
T COG0287           3 SMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALELGVIDEL----T-----VAGLAEAAAEADLVIV   70 (279)
T ss_pred             CcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhhcCccccc----c-----cchhhhhcccCCEEEE
Confidence            579999995 9999999999999998  5556666443221     12222211    0     1111467889999999


Q ss_pred             cC
Q 022263          103 PA  104 (300)
Q Consensus       103 ~a  104 (300)
                      +.
T Consensus        71 av   72 (279)
T COG0287          71 AV   72 (279)
T ss_pred             ec
Confidence            85

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.60  E-value=0.011  Score=56.45  Aligned_cols=56  Identities=25%  Similarity=0.318  Sum_probs=41.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      .++|+|||.+|-+|..++..|.+. ...+|+-+|..          |..          ..+.++.+++||+||++.
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~-~~~~V~g~D~~----------d~~----------~~~~~~~v~~aDlVilav   59 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTR-MQLEVIGHDPA----------DPG----------SLDPATLLQRADVLIFSA   59 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhc-CCCEEEEEcCC----------ccc----------cCCHHHHhcCCCEEEEeC
Confidence            359999996699999999999875 22388889862          110          124456789999999985

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.59  E-value=0.029  Score=49.46  Aligned_cols=115  Identities=17%  Similarity=0.167  Sum_probs=63.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCcc---cc-------cc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQL---GQ-------AL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d~---~~-------a~   94 (300)
                      .++|.|+||+|.+|+.++..|.+.|.  ++++++.++.+  ....++....  ..+..+.. -+|.   ++       .+
T Consensus         7 ~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (250)
T PRK12939          7 GKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL   82 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999887  89999875431  1222332211  12222211 1111   11       12


Q ss_pred             CCCCEEEEcCCCCCCC---CCcc---hhhhhhhHHHHHHHHHHHHhh---CCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (300)
                      .+.|+||.++|.....   ..+.   ...+..|..-...+.+.+.++   ...+.++++|.
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS  143 (250)
T PRK12939         83 GGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS  143 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence            5789999999864321   1111   122345555444444444332   23456666654

>PRK06398 aldose dehydrogenase; Validated

Probab=96.57  E-value=0.024  Score=50.89  Aligned_cols=151  Identities=17%  Similarity=0.179  Sum_probs=78.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-----HHHhccccCCCcEEEEecCCccccccCCCCEEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----AADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-----~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.+++.....     ..|+.+..   .+...  -....+.+...|++|.
T Consensus         6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~D~~~~~---~i~~~--~~~~~~~~~~id~li~   78 (258)
T PRK06398          6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYNDVDYFKVDVSNKE---QVIKG--IDYVISKYGRIDILVN   78 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccCceEEEEccCCCHH---HHHHH--HHHHHHHcCCCCEEEE
Confidence            35899999999999999999999887  8999987543211     11221110   00000  0001122457899999


Q ss_pred             cCCCCCC-C--CCcc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263          103 PAGVPRK-P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (300)
Q Consensus       103 ~ag~~~~-~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG  172 (300)
                      +||.... +  ..+.   ...+..|..    +.+.+.+.+.+. ..+.+|+++.-..           ..+ .+....++
T Consensus        79 ~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~-----------~~~-~~~~~~Y~  145 (258)
T PRK06398         79 NAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQ-DKGVIINIASVQS-----------FAV-TRNAAAYV  145 (258)
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEeCcchh-----------ccC-CCCCchhh
Confidence            9986421 1  1111   223455544    344445555433 3456666653221           011 33333444


Q ss_pred             eeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          173 VTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       173 ~t~Lds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                      .+..--..+-+.++.+++  +. |++..+
T Consensus       146 ~sKaal~~~~~~la~e~~--~~-i~vn~i  171 (258)
T PRK06398        146 TSKHAVLGLTRSIAVDYA--PT-IRCVAV  171 (258)
T ss_pred             hhHHHHHHHHHHHHHHhC--CC-CEEEEE
Confidence            432222345566677765  22 554444

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=96.57  E-value=0.045  Score=48.94  Aligned_cols=34  Identities=21%  Similarity=0.206  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      |+|.|+||+|.+|..++..|+..|.  +|++.|+++
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~   34 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNE   34 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            6899999999999999999999987  899999865

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.56  E-value=0.0065  Score=57.35  Aligned_cols=72  Identities=22%  Similarity=0.316  Sum_probs=47.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      ++||+|+||+|.+|..++..|.+.++ .-||..+-..+..++..++..    ..+.... . + ..+++++|+||++.|.
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g----~~i~v~d-~-~-~~~~~~vDvVf~A~g~   73 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG----KELKVED-L-T-TFDFSGVDIALFSAGG   73 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC----ceeEEee-C-C-HHHHcCCCEEEECCCh
Confidence            57999999999999999999988544 237777765544454443322    1222211 1 1 1356899999998763

>PLN02928 oxidoreductase family protein

Probab=96.56  E-value=0.0087  Score=56.82  Aligned_cols=105  Identities=19%  Similarity=0.216  Sum_probs=62.0

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHh--ccccCCCcEEEEecCCccccccCCCCEEEE
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADV--GHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl--~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      ....++|+|+|. |.||+.+|..|...|.  +|..+|..........+  ................++++.++.||+|++
T Consensus       156 ~l~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl  232 (347)
T PLN02928        156 TLFGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVL  232 (347)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEE
Confidence            345579999995 9999999999988777  89999975321111110  110000000000012367889999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +....  +         .+..++.  .+.+....|++++|+++
T Consensus       233 ~lPlt--~---------~T~~li~--~~~l~~Mk~ga~lINva  262 (347)
T PLN02928        233 CCTLT--K---------ETAGIVN--DEFLSSMKKGALLVNIA  262 (347)
T ss_pred             CCCCC--h---------HhhcccC--HHHHhcCCCCeEEEECC
Confidence            85321  1         1222221  23444556799999985

>PRK05993 short chain dehydrogenase; Provisional

Probab=96.56  E-value=0.0079  Score=54.60  Aligned_cols=111  Identities=11%  Similarity=0.050  Sum_probs=62.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC--Ccccccc--------CCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN--DQLGQAL--------EDSD   98 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t--~d~~~a~--------~~aD   98 (300)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.+++.....  ++.+.... .+.. .-+  .+.++++        ...|
T Consensus         5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~~~--~l~~~~~~-~~~~-Dl~d~~~~~~~~~~~~~~~~g~id   78 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEEDVA--ALEAEGLE-AFQL-DYAEPESIAALVAQVLELSGGRLD   78 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHCCce-EEEc-cCCCHHHHHHHHHHHHHHcCCCcc
Confidence            4799999999999999999999887  8999988643211  22211100 0110 001  0111111        2579


Q ss_pred             EEEEcCCCCCCCC---Cc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263           99 VVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        99 iVIi~ag~~~~~g---~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ++|.+||......   .+   -.+.+..|..-    .+.+.+.+++.. .+.+|++|.
T Consensus        79 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv~isS  135 (277)
T PRK05993         79 ALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIVQCSS  135 (277)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEEEECC
Confidence            9999998643211   11   12345556543    566666666554 345555543

>PRK06101 short chain dehydrogenase; Provisional

Probab=96.53  E-value=0.031  Score=49.42  Aligned_cols=115  Identities=18%  Similarity=0.128  Sum_probs=62.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCC-cEEE-EecCCccccccC----CCCEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRS-EVAG-YMGNDQLGQALE----DSDVVI  101 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~-~v~~-~~~t~d~~~a~~----~aDiVI  101 (300)
                      |.++.|+||+|.+|..++..|+..|.  +++++|+++....  ++.+..... .+.. .....+.+++++    ..|++|
T Consensus         1 ~~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i   76 (240)
T PRK06101          1 MTAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVLD--ELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWI   76 (240)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEE
Confidence            35789999999999999999999887  8999998643211  111111000 1111 000111222222    357888


Q ss_pred             EcCCCCCCCC---Ccc---hhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecC
Q 022263          102 IPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN  146 (300)
Q Consensus       102 i~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tN  146 (300)
                      +.+|......   .+.   .+.+..|..-...+.+.+..+ .+...+++++.
T Consensus        77 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS  128 (240)
T PRK06101         77 FNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGS  128 (240)
T ss_pred             EcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEec
Confidence            8887532111   111   234566776666666666543 23445555553

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.52  E-value=0.028  Score=47.97  Aligned_cols=33  Identities=36%  Similarity=0.633  Sum_probs=29.3

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ||+|+|+ |.+|+.++..|+..|+ ++++|+|.+.
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV   33 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            6899995 9999999999999886 5899999864

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.51  E-value=0.0051  Score=58.29  Aligned_cols=71  Identities=23%  Similarity=0.377  Sum_probs=48.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCC--CEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~--~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      .+||+|+||+|.+|..+...|..++.+  .+|.++...+..|+...+...    .+....  .|. +.++++|+||++++
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~----~l~v~~--~~~-~~~~~~Divf~a~~   77 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR----EIIIQE--AKI-NSFEGVDIAFFSAG   77 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc----ceEEEe--CCH-HHhcCCCEEEECCC
Confidence            479999999999999999988865443  468888876655554433321    222221  132 45789999999875

>PRK08219 short chain dehydrogenase; Provisional

Probab=96.51  E-value=0.013  Score=50.99  Aligned_cols=73  Identities=21%  Similarity=0.223  Sum_probs=45.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec----CCccccccC---CCCEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALE---DSDVV  100 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~a~~---~aDiV  100 (300)
                      +++|.|+||+|.+|..++..|++. .  ++++++++....  .++.+...  .+..+.+    ..+++++++   +.|+|
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~~--~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~id~v   75 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAERL--DELAAELP--GATPFPVDLTDPEAIAAAVEQLGRLDVL   75 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHHH--HHHHHHhc--cceEEecCCCCHHHHHHHHHhcCCCCEE
Confidence            468999999999999999999887 4  799998754221  12221110  1111111    112333343   69999


Q ss_pred             EEcCCCC
Q 022263          101 IIPAGVP  107 (300)
Q Consensus       101 Ii~ag~~  107 (300)
                      |+++|..
T Consensus        76 i~~ag~~   82 (227)
T PRK08219         76 VHNAGVA   82 (227)
T ss_pred             EECCCcC
Confidence            9999874

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=96.50  E-value=0.04  Score=51.50  Aligned_cols=66  Identities=18%  Similarity=0.194  Sum_probs=45.4

Q ss_pred             ceEEEEcCCCC--------------------hHHHHHHHHHhCCCCCEEEEEecCCcc---cHHHHhccccCCCcEEEEe
Q 022263           29 RKVAVLGAAGG--------------------IGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYM   85 (300)
Q Consensus        29 ~KI~IIGaaG~--------------------VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~   85 (300)
                      |||+|-|| |+                    =|+.+|..|+..|+  +|++||+++..   .....+.+..    ...  
T Consensus         1 ~~~~~~g~-gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaG----A~~--   71 (341)
T TIGR01724         1 MKVSVYGA-GNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAG----VKV--   71 (341)
T ss_pred             CeeEEecC-cchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCC----Cee--
Confidence            68888885 74                    36789999998888  99999986531   2223344332    221  


Q ss_pred             cCCccccccCCCCEEEEcC
Q 022263           86 GNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        86 ~t~d~~~a~~~aDiVIi~a  104 (300)
                       .++..++.+++|+||++.
T Consensus        72 -AaS~aEAAa~ADVVIL~L   89 (341)
T TIGR01724        72 -VSDDKEAAKHGEIHVLFT   89 (341)
T ss_pred             -cCCHHHHHhCCCEEEEec
Confidence             234568899999999984

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.50  E-value=0.02  Score=50.59  Aligned_cols=35  Identities=31%  Similarity=0.562  Sum_probs=30.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~   63 (300)
                      +..||+|+|+ |.+|+.++..|+..|+ +++.|+|.+
T Consensus        27 ~~~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            3458999996 9999999999999886 589999986

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.47  E-value=0.0067  Score=57.55  Aligned_cols=74  Identities=26%  Similarity=0.304  Sum_probs=44.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEE-EEecCCcccHHHH--hccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAAD--VGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~-L~D~~~~~g~~~d--l~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |||+|+||+|.+|..++..|.+.+.. +++ +++.++..++...  ..+......... . ..+.++.++++|+||++.+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~DvVf~alP   77 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLNL-E-PIDEEEIAEDADVVFLALP   77 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCcee-e-cCCHHHhhcCCCEEEECCC
Confidence            58999999999999999988877544 566 7677553343221  111111001111 1 1133344468999999864

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.47  E-value=0.0066  Score=57.37  Aligned_cols=72  Identities=18%  Similarity=0.302  Sum_probs=46.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      +|+||+|+||+|.+|.-+...|.+.++ ..+|.++...+..|+.+.+..  .  .+.... . +. ++++++|+||++.+
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~--~--~l~~~~-~-~~-~~~~~vD~vFla~p   75 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG--K--NLRVRE-V-DS-FDFSQVQLAFFAAG   75 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC--c--ceEEee-C-Ch-HHhcCCCEEEEcCC
Confidence            457999999999999999998886433 347777765444444333332  1  122211 1 21 34689999999765

>PRK12937 short chain dehydrogenase; Provisional

Probab=96.45  E-value=0.035  Score=48.80  Aligned_cols=114  Identities=16%  Similarity=0.134  Sum_probs=62.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHHHHhccccCCCcEEEEec-CC---ccccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG-ND---QLGQA-------   93 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-t~---d~~~a-------   93 (300)
                      ..+|.|+||+|.+|++++..|+..+.  ++++...+..   .....++....  ..+..+.. -+   +++++       
T Consensus         5 ~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (245)
T PRK12937          5 NKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAETA   80 (245)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999887  7777765332   11112222211  12222211 01   12222       


Q ss_pred             cCCCCEEEEcCCCCCCCC------CcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEec
Q 022263           94 LEDSDVVIIPAGVPRKPG------MTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMIS  145 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g------~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~t  145 (300)
                      +.+.|+||..+|......      +.-...+..|+.-...+.+.+.+. .+.+.++++|
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s  139 (245)
T PRK12937         81 FGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLS  139 (245)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEe
Confidence            236899999998642111      111223445655444444444333 2345666665

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.44  E-value=0.013  Score=58.75  Aligned_cols=108  Identities=21%  Similarity=0.306  Sum_probs=66.9

Q ss_pred             cccccc-CCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccc
Q 022263           15 PAGARG-YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA   93 (300)
Q Consensus        15 ~~~~~~-~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a   93 (300)
                      -.|.+. |.......++|+|+|. |.+|+.+|..+...|.  +|+.||.........++       .+...    ++++.
T Consensus       126 g~W~~~~~~g~~l~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~~----~l~el  191 (526)
T PRK13581        126 GKWERKKFMGVELYGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVELV----SLDEL  191 (526)
T ss_pred             CCCCccCccccccCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEEE----cHHHH
Confidence            346553 3334456679999995 9999999999988777  89999974322221111       12211    46788


Q ss_pred             cCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCc
Q 022263           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN  149 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d  149 (300)
                      ++.||+|++.....  + +++ .++  |    .   +.+....|++++|+++  ..+|
T Consensus       192 l~~aDiV~l~lP~t--~-~t~-~li--~----~---~~l~~mk~ga~lIN~aRG~~vd  236 (526)
T PRK13581        192 LARADFITLHTPLT--P-ETR-GLI--G----A---EELAKMKPGVRIINCARGGIID  236 (526)
T ss_pred             HhhCCEEEEccCCC--h-Hhh-cCc--C----H---HHHhcCCCCeEEEECCCCceeC
Confidence            99999999985322  1 111 111  2    1   2344445789999885  3455

>PRK06179 short chain dehydrogenase; Provisional

Probab=96.44  E-value=0.011  Score=53.09  Aligned_cols=34  Identities=24%  Similarity=0.206  Sum_probs=30.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+|.|+||+|.+|++++..|+..|.  +|++.+.+.
T Consensus         5 ~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~   38 (270)
T PRK06179          5 KVALVTGASSGIGRATAEKLARAGY--RVFGTSRNP   38 (270)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            4799999999999999999999887  899998854

>PRK07832 short chain dehydrogenase; Provisional

Probab=96.43  E-value=0.13  Score=46.36  Aligned_cols=34  Identities=35%  Similarity=0.431  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +++.|+||+|.+|..++..|+..|.  ++++++.+.
T Consensus         1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~   34 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDA   34 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3789999999999999999999886  799998754

>PRK07023 short chain dehydrogenase; Provisional

Probab=96.43  E-value=0.017  Score=51.02  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=31.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ||+|.|+||+|.+|..++..|++.|.  ++++++.+.
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~   35 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR   35 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence            57999999999999999999998887  899998754

>PRK09291 short chain dehydrogenase; Provisional

Probab=96.42  E-value=0.043  Score=48.69  Aligned_cols=75  Identities=19%  Similarity=0.152  Sum_probs=46.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HHH-hccccCCCcEEEEe--cC--CccccccC-CCCEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AAD-VGHINTRSEVAGYM--GN--DQLGQALE-DSDVVI  101 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~d-l~~~~~~~~v~~~~--~t--~d~~~a~~-~aDiVI  101 (300)
                      ++|.|+||+|.+|..++..|++.|.  ++++.+.+..... ..+ ......  .+....  -+  .++..++. +.|+||
T Consensus         3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~id~vi   78 (257)
T PRK09291          3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDAIDRAQAAEWDVDVLL   78 (257)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence            3799999999999999999999886  7888877532111 111 111111  122111  11  12233344 899999


Q ss_pred             EcCCCC
Q 022263          102 IPAGVP  107 (300)
Q Consensus       102 i~ag~~  107 (300)
                      ++||..
T Consensus        79 ~~ag~~   84 (257)
T PRK09291         79 NNAGIG   84 (257)
T ss_pred             ECCCcC
Confidence            999865

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.41  E-value=0.013  Score=48.38  Aligned_cols=73  Identities=22%  Similarity=0.345  Sum_probs=48.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +.++|+|+|+ |.+|..++..|...+ ..++.++|.+..+..  +.++....  ....    ..+..+.++++|+||.+.
T Consensus        18 ~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~Dvvi~~~   89 (155)
T cd01065          18 KGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG--IAIA----YLDLEELLAEADLIINTT   89 (155)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc--ccee----ecchhhccccCCEEEeCc
Confidence            3468999996 999999999998876 448999998653222  22222110  0011    124456689999999997


Q ss_pred             CCC
Q 022263          105 GVP  107 (300)
Q Consensus       105 g~~  107 (300)
                      ..+
T Consensus        90 ~~~   92 (155)
T cd01065          90 PVG   92 (155)
T ss_pred             CCC
Confidence            654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.41  E-value=0.019  Score=53.58  Aligned_cols=100  Identities=22%  Similarity=0.307  Sum_probs=61.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      ..++|+|+|+ |.+|..++..|...+. .+|.++|++..+..  ++.... ...+..   .+++.+++.++|+||.+.+.
T Consensus       177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~--~la~~~-g~~~~~---~~~~~~~l~~aDvVi~at~~  248 (311)
T cd05213         177 KGKKVLVIGA-GEMGELAAKHLAAKGV-AEITIANRTYERAE--ELAKEL-GGNAVP---LDELLELLNEADVVISATGA  248 (311)
T ss_pred             cCCEEEEECc-HHHHHHHHHHHHHcCC-CEEEEEeCCHHHHH--HHHHHc-CCeEEe---HHHHHHHHhcCCEEEECCCC
Confidence            4579999996 9999999988887552 48999998653322  222211 111111   12456778999999999775


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCc
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN  149 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d  149 (300)
                      +..            ..++.+..   ... ....+++-+++|-|
T Consensus       249 ~~~------------~~~~~~~~---~~~~~~~~~viDlavPrd  277 (311)
T cd05213         249 PHY------------AKIVERAM---KKRSGKPRLIVDLAVPRD  277 (311)
T ss_pred             Cch------------HHHHHHHH---hhCCCCCeEEEEeCCCCC
Confidence            521            11122221   112 24567888999988

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=96.41  E-value=0.011  Score=54.24  Aligned_cols=94  Identities=24%  Similarity=0.281  Sum_probs=64.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC--CCCEEEEcCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~--~aDiVIi~ag~  106 (300)
                      |||.|+|+.|++|+.+...|. .+.  +++-.|...     +|+.+..            ...+.++  .-|+||.+|..
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~------------~v~~~i~~~~PDvVIn~AAy   60 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPD------------AVLEVIRETRPDVVINAAAY   60 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChH------------HHHHHHHhhCCCEEEECccc
Confidence            679999999999999988776 333  677776533     4554432            1123344  45999999986


Q ss_pred             CC--CCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Q 022263          107 PR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (300)
Q Consensus       107 ~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~  144 (300)
                      ..  +...++..-+.-|..-...+++..++++  +++|-+
T Consensus        61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g--a~lVhi   98 (281)
T COG1091          61 TAVDKAESEPELAFAVNATGAENLARAAAEVG--ARLVHI   98 (281)
T ss_pred             cccccccCCHHHHHHhHHHHHHHHHHHHHHhC--CeEEEe
Confidence            43  2333456567789999999999988874  444444

>PRK06181 short chain dehydrogenase; Provisional

Probab=96.40  E-value=0.048  Score=48.72  Aligned_cols=115  Identities=17%  Similarity=0.153  Sum_probs=63.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCcc---ccc-------cC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQL---GQA-------LE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d~---~~a-------~~   95 (300)
                      ++|.|+||+|.+|..++..|+..+.  +|+++|++....  ...++....  ..+..+.. -.|.   +++       +.
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   77 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG   77 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999998886  899999864322  122232221  12222211 1121   111       23


Q ss_pred             CCCEEEEcCCCCCCCC---C-cc---hhhhhhhHHHHHHHHHHHHhhC--CCeEEEEecCC
Q 022263           96 DSDVVIIPAGVPRKPG---M-TR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNP  147 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~-~r---~dl~~~N~~i~~~i~~~i~~~~--p~a~viv~tNP  147 (300)
                      +.|+||.++|......   . +.   ...+..|..-...+.+.+.++-  ..+.+++++..
T Consensus        78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~  138 (263)
T PRK06181         78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSL  138 (263)
T ss_pred             CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence            6899999998643211   1 11   1234556555555555543321  23555555543

>PRK07890 short chain dehydrogenase; Provisional

Probab=96.39  E-value=0.042  Score=48.79  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .++|.|+||+|.+|.+++..|+.+|.  +|++.|+++
T Consensus         5 ~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~   39 (258)
T PRK07890          5 GKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTA   39 (258)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            35899999999999999999999887  899999864

>PLN02712 arogenate dehydrogenase

Probab=96.37  E-value=0.018  Score=59.24  Aligned_cols=66  Identities=21%  Similarity=0.290  Sum_probs=45.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC-CCCEEEEcC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPA  104 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~-~aDiVIi~a  104 (300)
                      ..+|||+|||. |.+|..++..|...|.  +|+.+|.+.....+.++       .+...   +++++.++ ++|+||++.
T Consensus       367 ~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~~-------Gv~~~---~~~~el~~~~aDvVILav  433 (667)
T PLN02712        367 GSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQKL-------GVSYF---SDADDLCEEHPEVILLCT  433 (667)
T ss_pred             CCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHc-------CCeEe---CCHHHHHhcCCCEEEECC
Confidence            36689999995 9999999999998876  89999986422111111       12221   34545554 599999985

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=96.37  E-value=0.0082  Score=56.93  Aligned_cols=74  Identities=18%  Similarity=0.283  Sum_probs=47.9

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ..++||+|+||+|.+|..+...|..+++ ..+|.++...+..|+..+...    ..+..-  ..+ .++++++|+||+++
T Consensus         5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~----~~~~v~--~~~-~~~~~~~D~vf~a~   77 (344)
T PLN02383          5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEG----RDYTVE--ELT-EDSFDGVDIALFSA   77 (344)
T ss_pred             CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecC----ceeEEE--eCC-HHHHcCCCEEEECC
Confidence            3457999999999999999988887543 347777766544444332221    122221  112 25678999999987


Q ss_pred             CC
Q 022263          105 GV  106 (300)
Q Consensus       105 g~  106 (300)
                      +.
T Consensus        78 p~   79 (344)
T PLN02383         78 GG   79 (344)
T ss_pred             Cc
Confidence            63

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.37  E-value=0.011  Score=51.73  Aligned_cols=35  Identities=29%  Similarity=0.537  Sum_probs=30.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~   63 (300)
                      ...||.|+|+ |.+|+.++..|+..|. ++|.|+|.+
T Consensus        20 ~~~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCC
Confidence            4458999995 9999999999999885 689999986

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=96.36  E-value=0.015  Score=52.81  Aligned_cols=33  Identities=12%  Similarity=0.269  Sum_probs=29.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ||.|+||+|++|++++..|.+.+.  ++....++.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~   33 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSS   33 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCC
Confidence            589999999999999999998887  888888764

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK06914 short chain dehydrogenase; Provisional

Probab=96.35  E-value=0.035  Score=50.16  Aligned_cols=34  Identities=18%  Similarity=0.119  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..+.|+||+|.+|.+++..|+.+|.  +|++++.+.
T Consensus         4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~   37 (280)
T PRK06914          4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNP   37 (280)
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCH
Confidence            3689999999999999999999887  899998754

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.34  E-value=0.031  Score=50.06  Aligned_cols=35  Identities=26%  Similarity=0.367  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..++.|+||+|.+|.+++..|+..|.  +|++.|++.
T Consensus         5 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (262)
T TIGR03325         5 GEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA   39 (262)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999999999887  899998754

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK06197 short chain dehydrogenase; Provisional

Probab=96.32  E-value=0.045  Score=50.37  Aligned_cols=116  Identities=22%  Similarity=0.130  Sum_probs=65.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec-CCcc---c-------ccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG-NDQL---G-------QAL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-t~d~---~-------~a~   94 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.+++.....  ..++........+..+.. -.|.   +       +.+
T Consensus        16 ~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~   93 (306)
T PRK06197         16 GRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY   93 (306)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence            35899999999999999999999887  8999987643221  222321111112222211 1111   1       113


Q ss_pred             CCCCEEEEcCCCCCCCC-Cc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG-MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g-~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|++||....+. .+   -...+..|..-    .+.+.+.+++.. .+.+|++|.
T Consensus        94 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS  152 (306)
T PRK06197         94 PRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVSS  152 (306)
T ss_pred             CCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEECC
Confidence            46899999998642221 11   12234455443    666666666543 355666653

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.31  E-value=0.014  Score=55.25  Aligned_cols=76  Identities=18%  Similarity=0.368  Sum_probs=49.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---------------------ccH--HHHhccccCCCcEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---------------------PGV--AADVGHINTRSEVAG   83 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---------------------~g~--~~dl~~~~~~~~v~~   83 (300)
                      +..||+|||+ |.+|+.++..|+..|+ ++|.|+|.+..                     +.+  +..+........+..
T Consensus        23 ~~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~  100 (338)
T PRK12475         23 REKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP  100 (338)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence            3458999996 9999999999999985 68999998641                     000  112222222234444


Q ss_pred             Eec--C-CccccccCCCCEEEEcC
Q 022263           84 YMG--N-DQLGQALEDSDVVIIPA  104 (300)
Q Consensus        84 ~~~--t-~d~~~a~~~aDiVIi~a  104 (300)
                      +..  + .+.++.++++|+||.+.
T Consensus       101 ~~~~~~~~~~~~~~~~~DlVid~~  124 (338)
T PRK12475        101 VVTDVTVEELEELVKEVDLIIDAT  124 (338)
T ss_pred             EeccCCHHHHHHHhcCCCEEEEcC
Confidence            321  1 23556789999999874

>PRK08251 short chain dehydrogenase; Provisional

Probab=96.31  E-value=0.064  Score=47.37  Aligned_cols=78  Identities=23%  Similarity=0.217  Sum_probs=48.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCcc----------ccccC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQL----------GQALE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d~----------~~a~~   95 (300)
                      +++.|+||+|.+|.+++..|+..+.  ++++.+++....  ...++........+..+.. -+|.          .+.+.
T Consensus         3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG   80 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999886  899998864221  1222222111112222211 1121          12245


Q ss_pred             CCCEEEEcCCCCC
Q 022263           96 DSDVVIIPAGVPR  108 (300)
Q Consensus        96 ~aDiVIi~ag~~~  108 (300)
                      ..|++|+.||...
T Consensus        81 ~id~vi~~ag~~~   93 (248)
T PRK08251         81 GLDRVIVNAGIGK   93 (248)
T ss_pred             CCCEEEECCCcCC
Confidence            7899999998753

>PRK08263 short chain dehydrogenase; Provisional

Probab=96.31  E-value=0.044  Score=49.53  Aligned_cols=34  Identities=15%  Similarity=0.091  Sum_probs=30.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +.|.|+||+|.+|++++..|+.++.  +|++.+.+.
T Consensus         4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~   37 (275)
T PRK08263          4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDT   37 (275)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCH
Confidence            4699999999999999999998886  899998754

>PRK12827 short chain dehydrogenase; Provisional

Probab=96.30  E-value=0.046  Score=48.02  Aligned_cols=102  Identities=20%  Similarity=0.340  Sum_probs=58.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHH----HHhccccCCCcEEEEecC-Cc---cccc----
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVA----ADVGHINTRSEVAGYMGN-DQ---LGQA----   93 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~----~dl~~~~~~~~v~~~~~t-~d---~~~a----   93 (300)
                      .++|.|+||+|.+|..++..|+..+.  ++++++....  ....    .++...  ...+..+... .|   .++.    
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~   81 (249)
T PRK12827          6 SRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAA--GGKALGLAFDVRDFAATRAALDAG   81 (249)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHH
Confidence            46899999999999999999999887  8899876321  1111    112111  1122222111 11   1122    


Q ss_pred             ---cCCCCEEEEcCCCCCCC---CCcc---hhhhhhhHHHHHHHHHHHH
Q 022263           94 ---LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIA  133 (300)
Q Consensus        94 ---~~~aDiVIi~ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~  133 (300)
                         ....|.||+++|.....   ..+.   ...+..|..-...+++.+.
T Consensus        82 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~  130 (249)
T PRK12827         82 VEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAAL  130 (249)
T ss_pred             HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence               24689999999864311   1111   2234567666666666665

>PRK09135 pteridine reductase; Provisional

Probab=96.30  E-value=0.026  Score=49.66  Aligned_cols=33  Identities=21%  Similarity=0.262  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~   63 (300)
                      ++|.|+||+|++|++++..|+..+.  ++++++..
T Consensus         7 ~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~   39 (249)
T PRK09135          7 KVALITGGARRIGAAIARTLHAAGY--RVAIHYHR   39 (249)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCC
Confidence            5899999999999999999999887  89999874

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=96.29  E-value=0.04  Score=50.85  Aligned_cols=116  Identities=20%  Similarity=0.127  Sum_probs=71.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH---HHHhccccCCCcEEEEec-CCccccccC--CCCEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV---AADVGHINTRSEVAGYMG-NDQLGQALE--DSDVVII  102 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~---~~dl~~~~~~~~v~~~~~-t~d~~~a~~--~aDiVIi  102 (300)
                      |++.|+||+||+|+++...+..+..-.+|+.+|.-.-.|.   ..++.+......+++-.+ .....+.++  +.|+|+.
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh   80 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH   80 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence            6899999999999999987777655457888886332222   233444321112332111 112334455  6899999


Q ss_pred             cCCCCCC--CCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Q 022263          103 PAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (300)
Q Consensus       103 ~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~  144 (300)
                      .|.-..-  .=..-.++++.|+--...+.+..+++...-.++=+
T Consensus        81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HI  124 (340)
T COG1088          81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHI  124 (340)
T ss_pred             echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEe
Confidence            8763210  00122567889999999999999999754334333

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=96.28  E-value=0.0085  Score=56.62  Aligned_cols=72  Identities=21%  Similarity=0.289  Sum_probs=47.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ..+||+|+||+|.+|..+...|.++.+ ..+|.++..+...|+...+...    .+.... . + +.++.++|+||++++
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~----~~~v~~-~-~-~~~~~~~Dvvf~a~p   75 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK----SVTVQD-A-A-EFDWSQAQLAFFVAG   75 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc----ceEEEe-C-c-hhhccCCCEEEECCC
Confidence            347999999999999999998888422 3488888665544543333221    222211 1 1 234589999999875

>PRK05650 short chain dehydrogenase; Provisional

Probab=96.27  E-value=0.077  Score=47.74  Aligned_cols=34  Identities=38%  Similarity=0.593  Sum_probs=30.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      |+|.|+||+|.+|+.++..|+..|.  +|++.+++.
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~   34 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNE   34 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4789999999999999999999887  899998854

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.26  E-value=0.029  Score=50.91  Aligned_cols=68  Identities=34%  Similarity=0.352  Sum_probs=43.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ||||+|+|++|.||+.++..+...+-+.-+.++|.+.......  ..  .  .+..   .+|+++.++++|+||...
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~--~~--~--~i~~---~~dl~~ll~~~DvVid~t   68 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ--GA--L--GVAI---TDDLEAVLADADVLIDFT   68 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc--CC--C--Cccc---cCCHHHhccCCCEEEECC
Confidence            5899999966999999998777654333344577754322111  11  1  2222   357777788999999664

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.26  E-value=0.098  Score=46.68  Aligned_cols=115  Identities=19%  Similarity=0.273  Sum_probs=64.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEe-cCCc---cccc-------cCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------LED   96 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-------~~~   96 (300)
                      .+++.|+||+|.+|..++..|+..|.  +|++++.+........+....  ..+..+. .-+|   .++.       +..
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   83 (251)
T PRK12481          8 GKVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMGH   83 (251)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            34789999999999999999999987  899888753222112222111  1122111 0111   1122       346


Q ss_pred             CCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           97 SDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        97 aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .|++|..||......   .+   -...+..|..    +.+.+.+.+.+....+.+|+++.
T Consensus        84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS  143 (251)
T PRK12481         84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIAS  143 (251)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCC
Confidence            899999998743211   11   1223445543    45555666655444466666654

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=96.26  E-value=0.053  Score=47.92  Aligned_cols=34  Identities=29%  Similarity=0.482  Sum_probs=30.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ++|.|+||+|.+|+.++..|...|.  +|++++++.
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~   35 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGE   35 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999998887  899999864

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.25  E-value=0.027  Score=57.41  Aligned_cols=138  Identities=14%  Similarity=0.173  Sum_probs=83.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcc----ccccCCCCEEEEc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL----GQALEDSDVVIIP  103 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~----~~a~~~aDiVIi~  103 (300)
                      .++|.|+|. |.+|+.++..|..+++  +++++|.++..-+  .+.+...+ -+.+ .. ++.    +..+++||.+|++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~v~--~~~~~g~~-v~~G-Da-t~~~~L~~agi~~A~~vv~~  471 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDISAVN--LMRKYGYK-VYYG-DA-TQLELLRAAGAEKAEAIVIT  471 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHHHHH--HHHhCCCe-EEEe-eC-CCHHHHHhcCCccCCEEEEE
Confidence            368999996 9999999999998887  8999998764322  23332211 1111 11 221    1346899999998


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEE-ecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHH
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK  182 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv-~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~  182 (300)
                      .+.+           +.|    ..++..+++.+|+..++. +.||.+      .+.+++.|   .+.++==+..-+.++-
T Consensus       472 ~~d~-----------~~n----~~i~~~~r~~~p~~~IiaRa~~~~~------~~~L~~~G---a~~vv~e~~es~l~l~  527 (601)
T PRK03659        472 CNEP-----------EDT----MKIVELCQQHFPHLHILARARGRVE------AHELLQAG---VTQFSRETFSSALELG  527 (601)
T ss_pred             eCCH-----------HHH----HHHHHHHHHHCCCCeEEEEeCCHHH------HHHHHhCC---CCEEEccHHHHHHHHH
Confidence            4321           334    345666788889866554 456655      23455555   4555433433344454


Q ss_pred             HHHHHHcCCCCCceE
Q 022263          183 TFYAGKANVNVAEVN  197 (300)
Q Consensus       183 ~~la~~l~v~~~~V~  197 (300)
                      ...=..+|+++++++
T Consensus       528 ~~~L~~lg~~~~~~~  542 (601)
T PRK03659        528 RKTLVSLGMHPHQAQ  542 (601)
T ss_pred             HHHHHHcCCCHHHHH
Confidence            555567777776653

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.25  E-value=0.03  Score=58.19  Aligned_cols=93  Identities=19%  Similarity=0.266  Sum_probs=58.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~  108 (300)
                      .||+|||+ |.+|..++..|...++..+|..+|.++.+..  ...+...  ...   .++++.++++++|+||++...  
T Consensus         4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~--~a~~~g~--~~~---~~~~~~~~~~~aDvVilavp~--   73 (735)
T PRK14806          4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLE--LAVSLGV--IDR---GEEDLAEAVSGADVIVLAVPV--   73 (735)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHH--HHHHCCC--CCc---ccCCHHHHhcCCCEEEECCCH--
Confidence            58999995 9999999999998875447999998653211  1111111  000   123556778999999998631  


Q ss_pred             CCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEec
Q 022263          109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (300)
Q Consensus       109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~t  145 (300)
                                    ..+.++.+.+.++. ++.+++.++
T Consensus        74 --------------~~~~~vl~~l~~~~~~~~ii~d~~   97 (735)
T PRK14806         74 --------------LAMEKVLADLKPLLSEHAIVTDVG   97 (735)
T ss_pred             --------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence                          22455555665553 455555443

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=96.25  E-value=0.041  Score=48.42  Aligned_cols=35  Identities=31%  Similarity=0.483  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .++|.|+||+|.+|.+++..|..++.  +|++++++.
T Consensus         6 ~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~   40 (251)
T PRK12826          6 GRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICG   40 (251)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999999999887  899998864

>PRK05876 short chain dehydrogenase; Provisional

Probab=96.25  E-value=0.027  Score=51.26  Aligned_cols=115  Identities=19%  Similarity=0.215  Sum_probs=64.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---ccc-------cc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQ-------AL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~-------a~   94 (300)
                      .+.+.|+||+|.+|.+++..|+..|.  +|++.|.+...  ....++....  ..+..+.. -+|   .++       .+
T Consensus         6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   81 (275)
T PRK05876          6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL   81 (275)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            34699999999999999999999887  89999986431  1222332211  11222111 011   111       12


Q ss_pred             CCCCEEEEcCCCCCCC---CCcc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|..||.....   ..+.   ...+..|..    +.+.+.+.+.+....+.+++++.
T Consensus        82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS  143 (275)
T PRK05876         82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS  143 (275)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            3579999999864211   1122   123445543    44455555555543456666654

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.24  E-value=0.012  Score=47.82  Aligned_cols=34  Identities=26%  Similarity=0.517  Sum_probs=29.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .||+|+|+ |.+|+.++..|+..|+ +++.|+|-+.
T Consensus         3 ~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~   36 (135)
T PF00899_consen    3 KRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDI   36 (135)
T ss_dssp             -EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred             CEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcc
Confidence            58999995 9999999999999886 6899999853

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=96.24  E-value=0.069  Score=47.60  Aligned_cols=114  Identities=16%  Similarity=0.219  Sum_probs=63.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc---cccc-------cCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQA-------LEDS   97 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~~~a   97 (300)
                      ..+.|+||+|.+|.+++..|++.|.  +|+++|.........++....  ..+..+.. -+|   .++.       +...
T Consensus        11 k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   86 (253)
T PRK08993         11 KVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFGHI   86 (253)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4789999999999999999999887  888888754322222232211  11211110 111   1121       2468


Q ss_pred             CEEEEcCCCCCC-C--CCc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263           98 DVVIIPAGVPRK-P--GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        98 DiVIi~ag~~~~-~--g~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      |++|.+||.... +  ..+   -.+.+..|..-    .+.+.+.+.+..+.+.+++++.
T Consensus        87 D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS  145 (253)
T PRK08993         87 DILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS  145 (253)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence            999999987431 1  111   12334455543    3444555544445577776654

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.23  E-value=0.0064  Score=56.77  Aligned_cols=69  Identities=14%  Similarity=0.184  Sum_probs=49.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecC-CcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIA-NTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~-~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      .++|+| ||+|.||..+...|.++++ .++|+|++.. ...|+...+...    .+....-+   ++++++.|++++ +|
T Consensus         3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~----~~~V~~l~---~~~f~~vDia~f-ag   73 (322)
T PRK06901          3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNK----AVEQIAPE---EVEWADFNYVFF-AG   73 (322)
T ss_pred             cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECCE----EEEEEECC---ccCcccCCEEEE-cC
Confidence            468999 9999999999999998876 5899999986 555543333221    22222112   257899999999 66

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=96.22  E-value=0.25  Score=43.90  Aligned_cols=35  Identities=37%  Similarity=0.475  Sum_probs=31.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.
T Consensus         8 ~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~   42 (260)
T PRK12823          8 GKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSE   42 (260)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence            45899999999999999999999887  899999864

>PRK06198 short chain dehydrogenase; Provisional

Probab=96.22  E-value=0.092  Score=46.71  Aligned_cols=36  Identities=17%  Similarity=0.231  Sum_probs=30.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCE-EEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSR-LALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~e-l~L~D~~~   64 (300)
                      +.++|.|+||+|.+|..++..|...+.  + |++++++.
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~   41 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNA   41 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCH
Confidence            345899999999999999999998886  5 99999854

>PRK05693 short chain dehydrogenase; Provisional

Probab=96.22  E-value=0.017  Score=52.12  Aligned_cols=35  Identities=23%  Similarity=0.202  Sum_probs=30.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      |+++.|+||+|.+|..++..|+..|.  +|++.+.+.
T Consensus         1 mk~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~   35 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKAAGY--EVWATARKA   35 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35799999999999999999998887  899998754

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.21  E-value=0.037  Score=48.39  Aligned_cols=35  Identities=29%  Similarity=0.556  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +++|.|+||+|.+|..++..|.++|.  +|.+++.++
T Consensus         5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~   39 (246)
T PRK05653          5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNE   39 (246)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            36899999999999999999999887  799998865

>PRK06138 short chain dehydrogenase; Provisional

Probab=96.21  E-value=0.047  Score=48.20  Aligned_cols=35  Identities=31%  Similarity=0.396  Sum_probs=30.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+++.|+||+|.+|++++..|+..|.  ++++++.+.
T Consensus         5 ~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~   39 (252)
T PRK06138          5 GRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDA   39 (252)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCH
Confidence            45899999999999999999999886  899998764

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.21  E-value=0.008  Score=53.34  Aligned_cols=103  Identities=20%  Similarity=0.311  Sum_probs=65.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc------cc---HHHHhcccc-CCC------cEEEEecCCcccc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT------PG---VAADVGHIN-TRS------EVAGYMGNDQLGQ   92 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~------~g---~~~dl~~~~-~~~------~v~~~~~t~d~~~   92 (300)
                      -||+|+| +|-+|+..|-.++..|+  ++.|||+.+.      +.   +..+|+... ...      .+..+++|++++|
T Consensus         4 ~ki~ivg-Sgl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E   80 (313)
T KOG2305|consen    4 GKIAIVG-SGLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE   80 (313)
T ss_pred             cceeEee-cccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence            4899999 79999999999999999  9999999641      11   222333221 111      1122456788888


Q ss_pred             ccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcc
Q 022263           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (300)
Q Consensus        93 a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~  150 (300)
                      ..++|=.|=.+  +            .+.+...+.+.+++.+.. |..++  .|.....
T Consensus        81 ~vk~Ai~iQEc--v------------pE~L~lkk~ly~qlD~i~d~~tIl--aSSTSt~  123 (313)
T KOG2305|consen   81 LVKGAIHIQEC--V------------PEDLNLKKQLYKQLDEIADPTTIL--ASSTSTF  123 (313)
T ss_pred             HHhhhhhHHhh--c------------hHhhHHHHHHHHHHHHhcCCceEE--ecccccc
Confidence            88888443223  2            234556677778888775 44443  5544443

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.19  E-value=0.058  Score=49.62  Aligned_cols=34  Identities=18%  Similarity=0.274  Sum_probs=30.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ++|.|+||+|.+|..++..|+..|.  +|++.+++.
T Consensus        41 k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~   74 (293)
T PRK05866         41 KRILLTGASSGIGEAAAEQFARRGA--TVVAVARRE   74 (293)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            5799999999999999999999887  899999864

>PRK12742 oxidoreductase; Provisional

Probab=96.19  E-value=0.082  Score=46.28  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=28.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~   62 (300)
                      .++|.|+||+|.+|..++..|+..|.  ++++.+.
T Consensus         6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~   38 (237)
T PRK12742          6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYA   38 (237)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecC
Confidence            45899999999999999999999887  7877765

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.19  E-value=0.052  Score=47.62  Aligned_cols=35  Identities=31%  Similarity=0.548  Sum_probs=29.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEE-ecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~-D~~~   64 (300)
                      +++|.|+||+|.+|..++..|++.+.  ++++. +.+.
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~   40 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINE   40 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            45899999999999999999998886  77777 8754

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.18  E-value=0.012  Score=55.20  Aligned_cols=74  Identities=27%  Similarity=0.298  Sum_probs=46.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCC--CcEEEEecCCcccc-ccCCCCEEEEc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR--SEVAGYMGNDQLGQ-ALEDSDVVIIP  103 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~--~~v~~~~~t~d~~~-a~~~aDiVIi~  103 (300)
                      .|+||+|+||+|..|..+...|..++.+ |+.++...+..|+...-.+-...  ..++..  +-|.++ ...+||+||++
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~--~~~~~~~~~~~~DvvFla   77 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLPFQ--TIDPEKIELDECDVVFLA   77 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccccc--cCChhhhhcccCCEEEEe
Confidence            3689999999999999999999988765 58888876545543322221111  112211  112222 24569999997

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.17  E-value=0.035  Score=48.85  Aligned_cols=115  Identities=18%  Similarity=0.160  Sum_probs=62.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCcccccc---CCCCEEEEc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQAL---EDSDVVIIP  103 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~---~~aDiVIi~  103 (300)
                      .+++.|+||+|.+|.+++..|+..+.  +|++++++..+..  ++.+......+.. .....+.++.+   ...|+||..
T Consensus         9 ~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~   84 (245)
T PRK07060          9 GKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAALD--RLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNC   84 (245)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEEC
Confidence            35899999999999999999999887  8999988542211  2211110001111 10001112222   358999999


Q ss_pred             CCCCCCC---CCcc---hhhhhhhHHHHHHHHHHHHhh----CCCeEEEEecC
Q 022263          104 AGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN  146 (300)
Q Consensus       104 ag~~~~~---g~~r---~dl~~~N~~i~~~i~~~i~~~----~p~a~viv~tN  146 (300)
                      +|.....   ..+.   ...+..|..-...+.+.+.+.    +..+.++++|.
T Consensus        85 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  137 (245)
T PRK07060         85 AGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS  137 (245)
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence            9864311   1111   223445655554455444433    22356666653

>TIGR02415 23BDH acetoin reductases

Probab=96.16  E-value=0.035  Score=49.19  Aligned_cols=112  Identities=20%  Similarity=0.288  Sum_probs=62.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEecC-Ccc---ccc-------cCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGN-DQL---GQA-------LED   96 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t-~d~---~~a-------~~~   96 (300)
                      ++.|+||+|.+|..++..|++.+.  ++++++.+....  ...++....  ..+..+..+ +|.   +++       +..
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~   77 (254)
T TIGR02415         2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGG   77 (254)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            589999999999999999999887  899998754211  112232211  122222111 121   111       245


Q ss_pred             CCEEEEcCCCCCC-C--CCcch---hhhhhhHH----HHHHHHHHHHhhCCCeEEEEec
Q 022263           97 SDVVIIPAGVPRK-P--GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        97 aDiVIi~ag~~~~-~--g~~r~---dl~~~N~~----i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      .|+||+++|.... +  +.+..   ..+..|..    +++.+.+.+.+.+..+.++++|
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s  136 (254)
T TIGR02415        78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA  136 (254)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            7999999986321 1  12222   22444543    3345555665555556666554

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK06128 oxidoreductase; Provisional

Probab=96.15  E-value=0.07  Score=49.04  Aligned_cols=115  Identities=23%  Similarity=0.248  Sum_probs=65.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc----cHHHHhccccCCCcEEEEec-CCc---c-------cc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP----GVAADVGHINTRSEVAGYMG-NDQ---L-------GQ   92 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~----g~~~dl~~~~~~~~v~~~~~-t~d---~-------~~   92 (300)
                      .++|.|+||+|.+|.+++..|+..|.  ++++.+.....    .....+....  ..+..+.. -+|   .       .+
T Consensus        55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~  130 (300)
T PRK06128         55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK  130 (300)
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence            35899999999999999999999887  78887664321    1111222211  11111110 011   1       12


Q ss_pred             ccCCCCEEEEcCCCCC--CC--CCc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263           93 ALEDSDVVIIPAGVPR--KP--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (300)
Q Consensus        93 a~~~aDiVIi~ag~~~--~~--g~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (300)
                      .+...|++|..||...  .+  ..+   -...+..|+.-...+++.+.++- +.+.+|+++.
T Consensus       131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS  192 (300)
T PRK06128        131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS  192 (300)
T ss_pred             HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence            2347899999998642  11  111   23355667665666666665542 3456666654

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.15  E-value=0.018  Score=51.29  Aligned_cols=37  Identities=22%  Similarity=0.292  Sum_probs=32.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT   65 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~   65 (300)
                      +..+|.|+||+|.+|.+++..|++.+.  +++++|+++.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~~   42 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDPE   42 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHH
Confidence            345899999999999999999999887  8999998653

>PRK07024 short chain dehydrogenase; Provisional

Probab=96.14  E-value=0.16  Score=45.34  Aligned_cols=35  Identities=34%  Similarity=0.333  Sum_probs=31.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +++|.|+||+|.+|..++..|++.|.  +|+++|.+.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~   36 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRT   36 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999999887  899999864

>PRK06841 short chain dehydrogenase; Provisional

Probab=96.14  E-value=0.018  Score=51.21  Aligned_cols=35  Identities=34%  Similarity=0.511  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .++|.|+||+|.+|.+++..|++.|.  +|++.+++.
T Consensus        15 ~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~   49 (255)
T PRK06841         15 GKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSE   49 (255)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999999887  899998864

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=96.14  E-value=0.046  Score=48.62  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+++.|+||+|.+|.+++..|+..|.  ++++.|++.
T Consensus         9 ~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~   43 (254)
T PRK08085          9 GKNILITGSAQGIGFLLATGLAEYGA--EIIINDITA   43 (254)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCH
Confidence            35799999999999999999999887  899999864

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=96.12  E-value=0.028  Score=52.82  Aligned_cols=95  Identities=20%  Similarity=0.337  Sum_probs=60.3

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      .....++++|+| .|.||+.+|..+.--+.  +|+-+|..+......++       ..+.    .++++.++.||+|++.
T Consensus       142 ~~l~gktvGIiG-~GrIG~avA~r~~~Fgm--~v~y~~~~~~~~~~~~~-------~~~y----~~l~ell~~sDii~l~  207 (324)
T COG1052         142 FDLRGKTLGIIG-LGRIGQAVARRLKGFGM--KVLYYDRSPNPEAEKEL-------GARY----VDLDELLAESDIISLH  207 (324)
T ss_pred             cCCCCCEEEEEC-CCHHHHHHHHHHhcCCC--EEEEECCCCChHHHhhc-------Ccee----ccHHHHHHhCCEEEEe
Confidence            345567999999 59999999998885455  99999986531111111       1121    1367889999999998


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +...           .+|-.++.  .+.+++..|.+++|+++
T Consensus       208 ~Plt-----------~~T~hLin--~~~l~~mk~ga~lVNta  236 (324)
T COG1052         208 CPLT-----------PETRHLIN--AEELAKMKPGAILVNTA  236 (324)
T ss_pred             CCCC-----------hHHhhhcC--HHHHHhCCCCeEEEECC
Confidence            5321           11222221  23344556889998875

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=96.12  E-value=0.04  Score=51.63  Aligned_cols=65  Identities=15%  Similarity=0.184  Sum_probs=43.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      .+||+|||+ |++|.+++..|...++  +++.++....... ..+...    .+..   + +..+++++||+|+++.
T Consensus         3 ~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~----Gv~~---~-s~~ea~~~ADiVvLaV   67 (314)
T TIGR00465         3 GKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATED----GFKV---G-TVEEAIPQADLIMNLL   67 (314)
T ss_pred             cCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHC----CCEE---C-CHHHHHhcCCEEEEeC
Confidence            468999995 9999999999999887  6666554322111 111111    1221   2 3457789999999986

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.10  E-value=0.039  Score=48.12  Aligned_cols=114  Identities=17%  Similarity=0.215  Sum_probs=61.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCcccc---ccC--CCCEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQ---ALE--DSDVVI  101 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~---a~~--~aDiVI  101 (300)
                      |.++.|+||+|.+|++++..|+..+.  +++++|.+.....  ++.+.... .+.. .....+.++   .+.  ..|+||
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~~~--~~~~~~~~-~~~~D~~~~~~v~~~~~~~~~~~~d~vi   75 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAALA--ALQALGAE-ALALDVADPASVAGLAWKLDGEALDAAV   75 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHHHH--HHHhccce-EEEecCCCHHHHHHHHHHhcCCCCCEEE
Confidence            35789999999999999999998886  8999998643211  22211100 0111 000111111   122  489999


Q ss_pred             EcCCCCCC---C--CCcc---hhhhhhhHHHHHHHHHHHHhhC--CCeEEEEecC
Q 022263          102 IPAGVPRK---P--GMTR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (300)
Q Consensus       102 i~ag~~~~---~--g~~r---~dl~~~N~~i~~~i~~~i~~~~--p~a~viv~tN  146 (300)
                      +++|....   +  ..+.   ...+..|..-...+.+.+.++-  ..+.+++++.
T Consensus        76 ~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS  130 (222)
T PRK06953         76 YVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSS  130 (222)
T ss_pred             ECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcC
Confidence            99987521   1  1122   2245566665555555554321  2345555543

>PRK06196 oxidoreductase; Provisional

Probab=96.10  E-value=0.043  Score=50.81  Aligned_cols=113  Identities=19%  Similarity=0.145  Sum_probs=63.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEE-EecCCcc-------ccccCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAG-YMGNDQL-------GQALEDS   97 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~-~~~t~d~-------~~a~~~a   97 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.+++..+..  ..++....   .+.. .....+.       .+.+.+.
T Consensus        26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~---~~~~Dl~d~~~v~~~~~~~~~~~~~i  100 (315)
T PRK06196         26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVE---VVMLDLADLESVRAFAERFLDSGRRI  100 (315)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCe---EEEccCCCHHHHHHHHHHHHhcCCCC
Confidence            35799999999999999999999887  8999988643221  11222110   0110 0000011       1123578


Q ss_pred             CEEEEcCCCCCCCCC----cchhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           98 DVVIIPAGVPRKPGM----TRDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        98 DiVIi~ag~~~~~g~----~r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      |++|+.||....+..    .....+..|..    +.+.+.+.+.+.. .+.+|++|.
T Consensus       101 D~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS  156 (315)
T PRK06196        101 DILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALSS  156 (315)
T ss_pred             CEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEECC
Confidence            999999986432211    11223444443    4566666665543 356666653

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.09  E-value=0.067  Score=46.75  Aligned_cols=34  Identities=26%  Similarity=0.296  Sum_probs=28.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~   62 (300)
                      ++++|.|+||+|.+|+.++..|.+++.  ++++...
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~   38 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARAGA--DVVVHYR   38 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeC
Confidence            356899999999999999999999887  6666554

>PRK07454 short chain dehydrogenase; Provisional

Probab=96.09  E-value=0.082  Score=46.51  Aligned_cols=36  Identities=28%  Similarity=0.352  Sum_probs=31.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +++++.|+||+|.+|..++..|++++.  +|++++++.
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   40 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGW--DLALVARSQ   40 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            355899999999999999999999887  899999864

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=96.09  E-value=0.017  Score=53.56  Aligned_cols=75  Identities=24%  Similarity=0.469  Sum_probs=46.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHH-hCCCCCEEEEEecCCcc--------------cHHHHh-ccccCCCcEEEEecCCccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTP--------------GVAADV-GHINTRSEVAGYMGNDQLG   91 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~-~~~~~~el~L~D~~~~~--------------g~~~dl-~~~~~~~~v~~~~~t~d~~   91 (300)
                      ++||+-||| |+||......++ .++.+ ++.++|++..+              |. .|. ..+  ..+--.+  ++|.+
T Consensus         1 ~~kicciga-gyvggptcavia~kcp~i-~vtvvd~s~~ri~~wnsd~lpiyepgl-devv~~c--rgknlff--stdie   73 (481)
T KOG2666|consen    1 MVKICCIGA-GYVGGPTCAVIALKCPDI-EVTVVDISVPRINAWNSDKLPIYEPGL-DEVVKQC--RGKNLFF--STDIE   73 (481)
T ss_pred             CceEEEecC-cccCCcchheeeecCCce-EEEEEecCchHhhcccCCCCcccCCCH-HHHHHHh--cCCceee--ecchH
Confidence            579999996 999965543333 23322 89999996421              11 011 111  1111223  36888


Q ss_pred             cccCCCCEEEEcCCCCCC
Q 022263           92 QALEDSDVVIIPAGVPRK  109 (300)
Q Consensus        92 ~a~~~aDiVIi~ag~~~~  109 (300)
                      .+++.||+|++.+..|.|
T Consensus        74 kai~eadlvfisvntptk   91 (481)
T KOG2666|consen   74 KAIKEADLVFISVNTPTK   91 (481)
T ss_pred             HHhhhcceEEEEecCCcc
Confidence            999999999999877654

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.07  E-value=0.034  Score=48.91  Aligned_cols=35  Identities=20%  Similarity=0.424  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++++++.
T Consensus         7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~   41 (239)
T PRK07666          7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTE   41 (239)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35799999999999999999999887  899999864

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=96.07  E-value=0.31  Score=43.86  Aligned_cols=154  Identities=14%  Similarity=0.182  Sum_probs=92.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCCcEEEEecC---------CccccccCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN---------DQLGQALEDS   97 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t---------~d~~~a~~~a   97 (300)
                      +-+.|+||++-+|..+|..|.+.|.  .++|..++.  .+..+.++.+...  .......|         ..+.+.+...
T Consensus         7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~--~~~~~DVtD~~~~~~~i~~~~~~~g~i   82 (246)
T COG4221           7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAA--LALALDVTDRAAVEAAIEALPEEFGRI   82 (246)
T ss_pred             cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCce--EEEeeccCCHHHHHHHHHHHHHhhCcc
Confidence            3578999999999999999999998  999999854  3444555553100  11111111         1133457889


Q ss_pred             CEEEEcCCCCCCCCC------cchhhhhhhHHHH----HHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022263           98 DVVIIPAGVPRKPGM------TRDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (300)
Q Consensus        98 DiVIi~ag~~~~~g~------~r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~  167 (300)
                      |++|..||..+....      +..+++..|++-+    +-+.+.+.+. ..+.||+++.=...           . .||.
T Consensus        83 DiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r-~~G~IiN~~SiAG~-----------~-~y~~  149 (246)
T COG4221          83 DILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER-KSGHIINLGSIAGR-----------Y-PYPG  149 (246)
T ss_pred             cEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc-CCceEEEecccccc-----------c-cCCC
Confidence            999999997544221      2345677787655    4455555544 35577777654431           1 2788


Q ss_pred             CcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          168 KKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       168 ~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                      ..+++-|.---.-|..-|-+.+  ....|++..|
T Consensus       150 ~~vY~ATK~aV~~fs~~LR~e~--~g~~IRVt~I  181 (246)
T COG4221         150 GAVYGATKAAVRAFSLGLRQEL--AGTGIRVTVI  181 (246)
T ss_pred             CccchhhHHHHHHHHHHHHHHh--cCCCeeEEEe
Confidence            8888765322222222222222  3477777766

>PRK07576 short chain dehydrogenase; Provisional

Probab=96.07  E-value=0.16  Score=45.64  Aligned_cols=35  Identities=20%  Similarity=0.292  Sum_probs=30.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..+|.|+||+|.+|..++..|+..|.  +|+++|++.
T Consensus         9 ~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~   43 (264)
T PRK07576          9 GKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQ   43 (264)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            34899999999999999999998887  899999864

>PLN02503 fatty acyl-CoA reductase 2

Probab=96.07  E-value=0.054  Score=55.13  Aligned_cols=109  Identities=19%  Similarity=0.109  Sum_probs=67.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCC-CCCEEEEEecCCcc--c-HHH--Hhccc---------c-------CCCcEEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTP--G-VAA--DVGHI---------N-------TRSEVAGY   84 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~-~~~el~L~D~~~~~--g-~~~--dl~~~---------~-------~~~~v~~~   84 (300)
                      +.+.|.|+||+|++|..++..|+... -.++|+++.+.+..  . +.+  ++.+.         .       ...++..+
T Consensus       118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v  197 (605)
T PLN02503        118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPV  197 (605)
T ss_pred             cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEE
Confidence            45689999999999999999888643 35678888764321  1 111  11110         0       01234443


Q ss_pred             ecC-C---------ccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC
Q 022263           85 MGN-D---------QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (300)
Q Consensus        85 ~~t-~---------d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~  136 (300)
                      .++ +         +++...++.|+||++|+... ...+..+.+..|+.-..++.+.+.+..
T Consensus       198 ~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~  258 (605)
T PLN02503        198 VGNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCK  258 (605)
T ss_pred             EeeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            321 1         12233467999999997643 233445567789999999998887653

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.06  E-value=0.081  Score=46.72  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=27.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~   62 (300)
                      ++|.|+||+|.+|++++..|+..|.  ++++.+.
T Consensus         6 k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~   37 (253)
T PRK08642          6 QTVLVTGGSRGLGAAIARAFAREGA--RVVVNYH   37 (253)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcC
Confidence            4799999999999999999998886  7777654

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=96.06  E-value=0.044  Score=48.07  Aligned_cols=72  Identities=17%  Similarity=0.200  Sum_probs=43.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc------cccccCCCCEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ------LGQALEDSDVVI  101 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d------~~~a~~~aDiVI  101 (300)
                      |+|.|+||+|.+|..++..|++.+....+.+.+.+....    ..+    ..+..+.. -+|      ..+.+...|++|
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~~----~~~~~~~~Dls~~~~~~~~~~~~~~id~li   72 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQH----DNVQWHALDVTDEAEIKQLSEQFTQLDWLI   72 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----ccc----CceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence            589999999999999999998875322566665533211    111    01111110 011      123457899999


Q ss_pred             EcCCCCC
Q 022263          102 IPAGVPR  108 (300)
Q Consensus       102 i~ag~~~  108 (300)
                      .++|...
T Consensus        73 ~~aG~~~   79 (235)
T PRK09009         73 NCVGMLH   79 (235)
T ss_pred             ECCcccc
Confidence            9999753

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.06  E-value=0.017  Score=52.34  Aligned_cols=101  Identities=23%  Similarity=0.286  Sum_probs=67.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhC----CCC-----CEEEEEecCCc--cc------HHHHhccccCCCcEEEEecCCccc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLN----PLV-----SRLALYDIANT--PG------VAADVGHINTRSEVAGYMGNDQLG   91 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~----~~~-----~el~L~D~~~~--~g------~~~dl~~~~~~~~v~~~~~t~d~~   91 (300)
                      .||.+.|| |..|..++.+|...    |+-     +.++|+|.+-.  .+      ....+.+...+  ...   ..++.
T Consensus        26 ~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~--~~~---~~~L~   99 (255)
T PF03949_consen   26 QRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNP--EKD---WGSLL   99 (255)
T ss_dssp             -EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSST--TT-----SSHH
T ss_pred             cEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcc--ccc---ccCHH
Confidence            49999996 99999998877765    773     68999998531  11      11112221111  111   13788


Q ss_pred             cccCCC--CEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263           92 QALEDS--DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus        92 ~a~~~a--DiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      ++++++  |++|=+.+.+   |           -+-+++.+.|.+++++.+|+=.|||..
T Consensus       100 eav~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIF~LSNPt~  145 (255)
T PF03949_consen  100 EAVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKHNERPIIFPLSNPTP  145 (255)
T ss_dssp             HHHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHHSSSEEEEE-SSSCG
T ss_pred             HHHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhccCCCCEEEECCCCCC
Confidence            999999  9988876643   2           124788889999999999999999987

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.04  E-value=0.22  Score=44.94  Aligned_cols=35  Identities=17%  Similarity=0.311  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+++.|+||+|.+|.+++..|+..|.  .|+++|.+.
T Consensus        10 ~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~   44 (278)
T PRK08277         10 GKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQ   44 (278)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35799999999999999999999887  899999864

>PRK06701 short chain dehydrogenase; Provisional

Probab=96.03  E-value=0.15  Score=46.79  Aligned_cols=116  Identities=15%  Similarity=0.142  Sum_probs=67.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cHHHHhccccCCCcEEEEec-CCc---ccccc-----
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMG-NDQ---LGQAL-----   94 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~-t~d---~~~a~-----   94 (300)
                      +.++|.|+||+|.+|++++..|+..|.  ++++++.+...   .....+...  ...+..+.. -+|   +++.+     
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i~~  120 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEETVR  120 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            446899999999999999999999887  89999885421   111122211  112222111 011   11222     


Q ss_pred             --CCCCEEEEcCCCCCCCC----Ccc---hhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecC
Q 022263           95 --EDSDVVIIPAGVPRKPG----MTR---DDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN  146 (300)
Q Consensus        95 --~~aDiVIi~ag~~~~~g----~~r---~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tN  146 (300)
                        ...|+||..||.....+    .+.   ...+..|+.-...+.+.+.++ .+.+.+|++|.
T Consensus       121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS  182 (290)
T PRK06701        121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS  182 (290)
T ss_pred             HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence              35799999998632111    111   234566776666666666554 34456666654

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.03  E-value=0.027  Score=50.18  Aligned_cols=100  Identities=22%  Similarity=0.346  Sum_probs=61.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCC-CEEEEEecCC----cccH-----HHHhccccCCCcEEEEecCCccccccCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLV-SRLALYDIAN----TPGV-----AADVGHINTRSEVAGYMGNDQLGQALED   96 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~-~el~L~D~~~----~~g~-----~~dl~~~~~~~~v~~~~~t~d~~~a~~~   96 (300)
                      +..||.|+|| |..|..++..|...|.- ++|.++|++.    .+..     ..++.+......   .  ..++.+++++
T Consensus        24 ~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~--~~~l~~~l~~   97 (226)
T cd05311          24 EEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---T--GGTLKEALKG   97 (226)
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---c--cCCHHHHHhc
Confidence            3458999996 99999999999887752 2799999973    2221     112221110001   1  1245678899


Q ss_pred             CCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcc
Q 022263           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (300)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~  150 (300)
                      +|++|-+.+    +|+     +  +    .+..+.+   +++.+++..+||..+
T Consensus        98 ~dvlIgaT~----~G~-----~--~----~~~l~~m---~~~~ivf~lsnP~~e  133 (226)
T cd05311          98 ADVFIGVSR----PGV-----V--K----KEMIKKM---AKDPIVFALANPVPE  133 (226)
T ss_pred             CCEEEeCCC----CCC-----C--C----HHHHHhh---CCCCEEEEeCCCCCc
Confidence            999988764    343     1  1    2333333   366777778899754

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=96.03  E-value=0.018  Score=54.63  Aligned_cols=34  Identities=32%  Similarity=0.373  Sum_probs=26.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEe
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD   61 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D   61 (300)
                      |+||+|+||+|.+|..++..|...+..+-+.+.|
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~   35 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTS   35 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEEC
Confidence            5799999998999999998888765443345566

>PRK05854 short chain dehydrogenase; Provisional

Probab=96.03  E-value=0.07  Score=49.53  Aligned_cols=170  Identities=15%  Similarity=0.096  Sum_probs=83.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCcc----------cccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQL----------GQAL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d~----------~~a~   94 (300)
                      .+++.|+||++.+|..++..|+..|.  +|++.+++..+.  ...++........+..+.. -.|+          .+..
T Consensus        14 gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~   91 (313)
T PRK05854         14 GKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG   91 (313)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            45899999999999999999999886  899998865322  2223322111112222110 1121          1123


Q ss_pred             CCCCEEEEcCCCCCCCC--Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCC
Q 022263           95 EDSDVVIIPAGVPRKPG--MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY  165 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g--~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~  165 (300)
                      ...|++|..||....+.  .+   -...+..|.-    +.+.+.+.+++.  .+.+|+++.-......+-..-+.....+
T Consensus        92 ~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vsS~~~~~~~~~~~~~~~~~~~  169 (313)
T PRK05854         92 RPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQSSIAARRGAINWDDLNWERSY  169 (313)
T ss_pred             CCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEechhhcCCCcCcccccccccC
Confidence            46899999998643221  11   1223444433    345555555443  3455555432210000000000000012


Q ss_pred             CCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       166 ~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                      ++...++.+.+-...+-..+++++......|++..+
T Consensus       170 ~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v  205 (313)
T PRK05854        170 AGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLA  205 (313)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Confidence            233334444443444556666665444455665555

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.03  E-value=0.015  Score=51.99  Aligned_cols=35  Identities=17%  Similarity=0.218  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .++|.|+||+|.+|+.++..|+..|.  +|++.++++
T Consensus         9 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~   43 (260)
T PRK06523          9 GKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSR   43 (260)
T ss_pred             CCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCCh
Confidence            45899999999999999999999887  899998854

>PRK06172 short chain dehydrogenase; Provisional

Probab=96.00  E-value=0.069  Score=47.37  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..+|.|+||+|.+|..++..|+..|.  ++++++.+.
T Consensus         7 ~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~   41 (253)
T PRK06172          7 GKVALVTGGAAGIGRATALAFAREGA--KVVVADRDA   41 (253)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            35899999999999999999998886  899999864

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=95.99  E-value=0.048  Score=50.63  Aligned_cols=114  Identities=13%  Similarity=0.077  Sum_probs=63.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---ccccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQAL-------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a~-------   94 (300)
                      +++|.|+||+|.+|.+++..|+..|.  +|++.+++..+.  ...++...  ...+..+.. -+|   .++++       
T Consensus         6 ~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   81 (322)
T PRK07453          6 KGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRALG   81 (322)
T ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            45799999999999999999999886  899998754322  12223211  112222111 111   11222       


Q ss_pred             CCCCEEEEcCCCCCC----CCCcc---hhhhhhhHH----HHHHHHHHHHhhCC-CeEEEEec
Q 022263           95 EDSDVVIIPAGVPRK----PGMTR---DDLFNINAG----IVKDLCSAIAKYCP-NAIVNMIS  145 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~----~g~~r---~dl~~~N~~----i~~~i~~~i~~~~p-~a~viv~t  145 (300)
                      ...|++|..||....    ...+.   ...+..|..    +.+.+.+.+.+... .+.||+++
T Consensus        82 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs  144 (322)
T PRK07453         82 KPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG  144 (322)
T ss_pred             CCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence            248999999986321    11121   223455654    44555555554432 24566554

>PRK05855 short chain dehydrogenase; Validated

Probab=95.98  E-value=0.098  Score=52.03  Aligned_cols=116  Identities=17%  Similarity=0.213  Sum_probs=67.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCcc---cc-------c
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQL---GQ-------A   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d~---~~-------a   93 (300)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.+++....  ...++.....  .+..+.. -+|.   ++       .
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~  389 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAGA--VAHAYRVDVSDADAMEAFAEWVRAE  389 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            446899999999999999999999887  899999865321  2222322111  1221110 0121   11       1


Q ss_pred             cCCCCEEEEcCCCCCCCC---Ccc---hhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRKPG---MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +...|++|.+||......   .+.   ...+..|.    ...+.+.+.+.+.+..+.+|++|.
T Consensus       390 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS  452 (582)
T PRK05855        390 HGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVAS  452 (582)
T ss_pred             cCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence            235899999999753211   111   12334554    344555566666555567777654

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=95.98  E-value=0.056  Score=47.80  Aligned_cols=35  Identities=34%  Similarity=0.368  Sum_probs=30.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+++.|+||+|.+|+.++..|+..+.  +++++|.+.
T Consensus         8 ~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~   42 (252)
T PRK08220          8 GKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF   42 (252)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence            35899999999999999999999887  899998754

>PLN02780 ketoreductase/ oxidoreductase

Probab=95.98  E-value=0.051  Score=50.80  Aligned_cols=35  Identities=26%  Similarity=0.322  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ...+.|+||+|.+|.+++..|+..|.  +|+++++++
T Consensus        53 g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~   87 (320)
T PLN02780         53 GSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNP   87 (320)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCH
Confidence            35799999999999999999999987  899999865

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.97  E-value=0.042  Score=53.60  Aligned_cols=125  Identities=25%  Similarity=0.338  Sum_probs=72.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH---HHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV---AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~---~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      .++|.|+|+ |.+|..+|..|+..|.  +|+++|.+.....   ..++...    .++.+.+. ...+...++|+||.++
T Consensus         5 ~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~-~~~~~~~~~d~vv~~~   76 (450)
T PRK14106          5 GKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGEL----GIELVLGE-YPEEFLEGVDLVVVSP   76 (450)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCEEEeCC-cchhHhhcCCEEEECC
Confidence            358999996 8899999999999998  8999999642211   1222211    22232221 1124457899999998


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe--cCCCcccHHHHHHHHHHhC
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIAAEVFKKAG  163 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~--tNP~d~~~~i~~~~~~~~~  163 (300)
                      |.+.... .....-+.+++++...+...... + ..+|-+  ||==.+.+.+++++++..+
T Consensus        77 g~~~~~~-~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~~g  134 (450)
T PRK14106         77 GVPLDSP-PVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKNAG  134 (450)
T ss_pred             CCCCCCH-HHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence            8742111 11111234666666555443332 2 334445  4433445567777777654

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=95.97  E-value=0.078  Score=42.12  Aligned_cols=102  Identities=23%  Similarity=0.217  Sum_probs=52.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCc-EEEEecCCccccccCCCCEEEEcCCCCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-VAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~-v~~~~~t~d~~~a~~~aDiVIi~ag~~~  108 (300)
                      ||+|+|++|.+|..++..|...+.+.-..+++.++..+......+...... ...+. ..+++  ..++|+||++.+.. 
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~DvV~~~~~~~-   76 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELE-PEDFE--ELAVDIVFLALPHG-   76 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccc-cCChh--hcCCCEEEEcCCcH-
Confidence            689999779999999988888643432334465433333222122111000 11111 12221  35899999985421 


Q ss_pred             CCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                                 ...+.+..+   .....++.++|-.|++..
T Consensus        77 -----------~~~~~~~~~---~~~~~~g~~viD~s~~~~  103 (122)
T smart00859       77 -----------VSKEIAPLL---PKAAEAGVKVIDLSSAFR  103 (122)
T ss_pred             -----------HHHHHHHHH---HhhhcCCCEEEECCcccc
Confidence                       122222211   222346777777777654

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK05884 short chain dehydrogenase; Provisional

Probab=95.96  E-value=0.024  Score=49.83  Aligned_cols=34  Identities=18%  Similarity=0.250  Sum_probs=30.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ||+.|+||+|.+|+.++..|...+.  +++++++++
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~   34 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR   34 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5899999999999999999998887  899998854

>PRK08265 short chain dehydrogenase; Provisional

Probab=95.96  E-value=0.17  Score=45.42  Aligned_cols=35  Identities=29%  Similarity=0.321  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++.
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (261)
T PRK08265          6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDA   40 (261)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999999887  899999864

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=95.95  E-value=0.017  Score=49.89  Aligned_cols=76  Identities=21%  Similarity=0.257  Sum_probs=47.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec--CCccccccCCCCEEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG--NDQLGQALEDSDVVII  102 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~--t~d~~~a~~~aDiVIi  102 (300)
                      +.+++.|+||+|.+|..++..|...+.  ++.+++++..+.+  ..++.+. ....+.....  ..+..++++++|+||.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~diVi~  103 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRAR-FGEGVGAVETSDDAARAAAIKGADVVFA  103 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhh-cCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence            446899999889999999999988775  8999987643222  2223211 1112222111  1233467899998887


Q ss_pred             cCC
Q 022263          103 PAG  105 (300)
Q Consensus       103 ~ag  105 (300)
                      +..
T Consensus       104 at~  106 (194)
T cd01078         104 AGA  106 (194)
T ss_pred             CCC
Confidence            654

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.95  E-value=0.074  Score=47.14  Aligned_cols=34  Identities=26%  Similarity=0.328  Sum_probs=29.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ++|.|+||+|.+|++++..|+..+.  +++++|...
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~   36 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPD   36 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCc
Confidence            4689999999999999999999887  899998753

>PRK07063 short chain dehydrogenase; Provisional

Probab=95.95  E-value=0.13  Score=45.75  Aligned_cols=35  Identities=31%  Similarity=0.392  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|.++
T Consensus         7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~   41 (260)
T PRK07063          7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDA   41 (260)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45799999999999999999999887  899999865

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.94  E-value=0.055  Score=44.25  Aligned_cols=32  Identities=28%  Similarity=0.614  Sum_probs=29.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~   63 (300)
                      ||.|+|+ |.+|+.++..|+..|. +++.++|.+
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFD   32 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCC
Confidence            6899995 9999999999999886 689999986

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.94  E-value=0.014  Score=54.42  Aligned_cols=92  Identities=14%  Similarity=0.109  Sum_probs=59.8

Q ss_pred             hhhhhhhhccccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHh-CCCCCEEEEEecCCccc--HHHHhccccCCCcE
Q 022263            5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANTPG--VAADVGHINTRSEV   81 (300)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~-~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v   81 (300)
                      .|-.++|-|-.+..-+++... ...+|+|+|+ |.+|...+..+.. .+ ..++.++|+++.+.  .+.++...  ...+
T Consensus       103 ~lT~~RTaA~sala~~~La~~-~~~~v~IiGa-G~qa~~~~~al~~~~~-~~~v~v~~r~~~~a~~~a~~~~~~--~~~~  177 (304)
T PRK07340        103 TVTGRRTAAVSLLAARTLAPA-PPGDLLLIGT-GVQARAHLEAFAAGLP-VRRVWVRGRTAASAAAFCAHARAL--GPTA  177 (304)
T ss_pred             hHHHHHHHHHHHHHHHHhCCC-CCCEEEEECC-cHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhc--CCee
Confidence            444556655555555566554 4569999995 9999998887765 44 36899999975432  33334321  1122


Q ss_pred             EEEecCCccccccCCCCEEEEcCC
Q 022263           82 AGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        82 ~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      .    ..+.++++.++|+||.+-.
T Consensus       178 ~----~~~~~~av~~aDiVitaT~  197 (304)
T PRK07340        178 E----PLDGEAIPEAVDLVVTATT  197 (304)
T ss_pred             E----ECCHHHHhhcCCEEEEccC
Confidence            2    1356788999999998754

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.94  E-value=0.083  Score=46.24  Aligned_cols=71  Identities=11%  Similarity=0.124  Sum_probs=45.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      +.+||.|||| |.+|...+..|...+.  +|++++.+... ...++.+..   .+.......+ ++.+.++|+||.+.+
T Consensus         9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~-~l~~l~~~~---~i~~~~~~~~-~~~l~~adlViaaT~   79 (202)
T PRK06718          9 SNKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTE-NLVKLVEEG---KIRWKQKEFE-PSDIVDAFLVIAATN   79 (202)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCH-HHHHHHhCC---CEEEEecCCC-hhhcCCceEEEEcCC
Confidence            3459999996 9999999998888885  89999753322 222333221   2322211112 356899999888744

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=95.93  E-value=0.015  Score=54.70  Aligned_cols=72  Identities=13%  Similarity=0.157  Sum_probs=47.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ...+++|||+ |.+|...+..+.....+++|.++|+++.+.  .+.++.+.  ...+..   ..+.++++++||+|+.+.
T Consensus       127 ~~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~---~~~~~eav~~aDiVitaT  200 (325)
T TIGR02371       127 DSSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVRA---ATDPREAVEGCDILVTTT  200 (325)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEE---eCCHHHHhccCCEEEEec
Confidence            3568999995 999987666555444467999999976432  23334321  112333   246778999999999864

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK12743 oxidoreductase; Provisional

Probab=95.92  E-value=0.28  Score=43.65  Aligned_cols=32  Identities=22%  Similarity=0.306  Sum_probs=28.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~   62 (300)
                      .+|.|+||+|.+|.+++..|+..|.  ++++.+.
T Consensus         3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~   34 (256)
T PRK12743          3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWH   34 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeC
Confidence            4789999999999999999999887  7877754

>PRK08264 short chain dehydrogenase; Validated

Probab=95.92  E-value=0.043  Score=48.16  Aligned_cols=112  Identities=14%  Similarity=0.060  Sum_probs=61.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec----CCccccc---cCCCCEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQA---LEDSDVV  100 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~a---~~~aDiV  100 (300)
                      .++|.|+||+|.+|+.++..|++.+. .+|++++.+..+...   ..    ..+..+..    .+++++.   +...|+|
T Consensus         6 ~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~---~~----~~~~~~~~D~~~~~~~~~~~~~~~~id~v   77 (238)
T PRK08264          6 GKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVTD---LG----PRVVPLQLDVTDPASVAAAAEAASDVTIL   77 (238)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhhh---cC----CceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence            35799999999999999999998874 368888875432111   10    01111110    1122222   3358999


Q ss_pred             EEcCCCCCCCC----Ccc---hhhhhhhHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 022263          101 IIPAGVPRKPG----MTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (300)
Q Consensus       101 Ii~ag~~~~~g----~~r---~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  147 (300)
                      |.++|....++    .+.   .+.+..|..-...+.+.+.+.   ...+.++++|..
T Consensus        78 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~  134 (238)
T PRK08264         78 VNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSV  134 (238)
T ss_pred             EECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCh
Confidence            99998732211    111   123344554444444444322   234556666543

>PRK07677 short chain dehydrogenase; Provisional

Probab=95.92  E-value=0.16  Score=45.16  Aligned_cols=113  Identities=10%  Similarity=0.111  Sum_probs=63.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---ccc-------ccC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQ-------ALE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~-------a~~   95 (300)
                      +++.|+||+|.+|.+++..|+..|.  .|++.|.+...  ....++....  ..+..+.. -+|   .++       .+.
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG   77 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999887  89999986421  1222232211  12222211 112   111       134


Q ss_pred             CCCEEEEcCCCCCC-C--CCcc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEec
Q 022263           96 DSDVVIIPAGVPRK-P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        96 ~aDiVIi~ag~~~~-~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ..|++|.++|.... +  ..+.   ...+..|..    +.+.+.+.+.+....+.++++|
T Consensus        78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~is  137 (252)
T PRK07677         78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMV  137 (252)
T ss_pred             CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEc
Confidence            68999999985321 1  1222   223444544    4444444444434456777766

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=95.91  E-value=0.074  Score=49.65  Aligned_cols=105  Identities=17%  Similarity=0.116  Sum_probs=66.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC-c----ccHHHHhccccCCCcEEEEecC-Cc---ccccc--CC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T----PGVAADVGHINTRSEVAGYMGN-DQ---LGQAL--ED   96 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~-~----~g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~--~~   96 (300)
                      ..+|.|+||+|++|+|.+..|...+.  +++.+|.-. .    -..+..+.+.  ...+..+.+. .|   +++.|  ..
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~~~--~~~v~f~~~Dl~D~~~L~kvF~~~~   77 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQLLGE--GKSVFFVEGDLNDAEALEKLFSEVK   77 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHhcCC--CCceEEEEeccCCHHHHHHHHhhcC
Confidence            35899999999999999999999998  899999832 1    1112223332  1234333221 11   12222  34


Q ss_pred             CCEEEEcCCCCC-CCC-CcchhhhhhhHHHHHHHHHHHHhhC
Q 022263           97 SDVVIIPAGVPR-KPG-MTRDDLFNINAGIVKDLCSAIAKYC  136 (300)
Q Consensus        97 aDiVIi~ag~~~-~~g-~~r~dl~~~N~~i~~~i~~~i~~~~  136 (300)
                      -|-|++.|+... .+- +.+..+...|+--...+.+.+++++
T Consensus        78 fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~  119 (343)
T KOG1371|consen   78 FDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN  119 (343)
T ss_pred             CceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC
Confidence            788888876532 111 2345666778888888999999887

>PRK06436 glycerate dehydrogenase; Provisional

Probab=95.91  E-value=0.036  Score=51.66  Aligned_cols=96  Identities=21%  Similarity=0.366  Sum_probs=61.5

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      .....+|+|+| .|.||+.+|..+...|.  +++.+|.....       + ..  . ..+   .++++.++.||+|++..
T Consensus       119 ~L~gktvgIiG-~G~IG~~vA~~l~afG~--~V~~~~r~~~~-------~-~~--~-~~~---~~l~ell~~aDiv~~~l  181 (303)
T PRK06436        119 LLYNKSLGILG-YGGIGRRVALLAKAFGM--NIYAYTRSYVN-------D-GI--S-SIY---MEPEDIMKKSDFVLISL  181 (303)
T ss_pred             CCCCCEEEEEC-cCHHHHHHHHHHHHCCC--EEEEECCCCcc-------c-Cc--c-ccc---CCHHHHHhhCCEEEECC
Confidence            44567999999 59999999988776677  89999974321       0 00  0 001   25678899999999985


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCcc
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNS  150 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d~  150 (300)
                      ...  + +++        .++.  .+.+....|++++|+++  .++|.
T Consensus       182 p~t--~-~T~--------~li~--~~~l~~mk~ga~lIN~sRG~~vd~  216 (303)
T PRK06436        182 PLT--D-ETR--------GMIN--SKMLSLFRKGLAIINVARADVVDK  216 (303)
T ss_pred             CCC--c-hhh--------cCcC--HHHHhcCCCCeEEEECCCccccCH
Confidence            321  1 111        1111  23344445789999984  56664

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=95.90  E-value=0.032  Score=53.58  Aligned_cols=63  Identities=21%  Similarity=0.432  Sum_probs=45.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ...++|+|||. |+||+.++..|...|.  ++..+|......     .+     ... +   .++++.++.||+|++..-
T Consensus       114 L~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~~-----~~-----~~~-~---~~L~ell~~sDiI~lh~P  176 (378)
T PRK15438        114 LHDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRADR-----GD-----EGD-F---RSLDELVQEADILTFHTP  176 (378)
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCccccc-----cc-----ccc-c---CCHHHHHhhCCEEEEeCC
Confidence            45569999995 9999999999988887  999999632210     00     001 1   256788899999998653

>PRK08177 short chain dehydrogenase; Provisional

Probab=95.90  E-value=0.029  Score=49.12  Aligned_cols=36  Identities=17%  Similarity=0.195  Sum_probs=31.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT   65 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~   65 (300)
                      |++|.|+||+|.+|+.++..|+..|.  +|+++|++..
T Consensus         1 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~   36 (225)
T PRK08177          1 KRTALIIGASRGLGLGLVDRLLERGW--QVTATVRGPQ   36 (225)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCCc
Confidence            35799999999999999999999887  8999998653

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=95.90  E-value=0.14  Score=52.89  Aligned_cols=35  Identities=31%  Similarity=0.396  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .++|.|+||+|.+|.+++..|++.|.  +|++.|++.
T Consensus       414 gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~  448 (676)
T TIGR02632       414 RRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNL  448 (676)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCH
Confidence            45799999999999999999999887  899999864

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.89  E-value=0.047  Score=53.92  Aligned_cols=134  Identities=18%  Similarity=0.187  Sum_probs=81.1

Q ss_pred             cccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHh-ccccCCCcEEEEecCCcccc
Q 022263           14 KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADV-GHINTRSEVAGYMGNDQLGQ   92 (300)
Q Consensus        14 ~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl-~~~~~~~~v~~~~~t~d~~~   92 (300)
                      .|...|.+....    ||.|+|+ |..|.+++..|...|.  ++..+|.+....  .++ ...    .+..+.+.++ .+
T Consensus         5 ~~~~~~~~~~~~----~v~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~~--~~~l~~~----gi~~~~~~~~-~~   70 (473)
T PRK00141          5 VPLSALPQELSG----RVLVAGA-GVSGRGIAAMLSELGC--DVVVADDNETAR--HKLIEVT----GVADISTAEA-SD   70 (473)
T ss_pred             ChhhhcccccCC----eEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCChHHH--HHHHHhc----CcEEEeCCCc-hh
Confidence            466666665555    8999995 9999999999999887  899999754321  122 221    2333333222 24


Q ss_pred             ccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHh-----hC-CCeEEEEe--cCCCcccHHHHHHHHHHhC
Q 022263           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-----YC-PNAIVNMI--SNPVNSTVPIAAEVFKKAG  163 (300)
Q Consensus        93 a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~-----~~-p~a~viv~--tNP~d~~~~i~~~~~~~~~  163 (300)
                      .+.++|+||.+.|++... ......-+.+++++.++.-....     +. |. .+|-+  ||==.+.+.+++++++..+
T Consensus        71 ~~~~~d~vV~Spgi~~~~-p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~-~vIaVTGTnGKTTTt~ml~~iL~~~g  147 (473)
T PRK00141         71 QLDSFSLVVTSPGWRPDS-PLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPR-TWLAVTGTNGKTTTTAMLAAMMQEGG  147 (473)
T ss_pred             HhcCCCEEEeCCCCCCCC-HHHHHHHHCCCceeeHHHHHHHhhhhhccCCCC-CEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence            578899999999887422 12222334566777655543221     21 32 23334  5544556677788887765

>PRK08589 short chain dehydrogenase; Validated

Probab=95.89  E-value=0.29  Score=44.13  Aligned_cols=34  Identities=29%  Similarity=0.421  Sum_probs=30.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~   63 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.+++
T Consensus         6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~   39 (272)
T PRK08589          6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIA   39 (272)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCc
Confidence            45799999999999999999999887  89999986

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.88  E-value=0.032  Score=51.58  Aligned_cols=96  Identities=18%  Similarity=0.241  Sum_probs=60.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      ...+|+|+|+ |.+|..++..|...|.  +|.++|++..+..  ......    ..... ..++.+.++++|+||.+...
T Consensus       150 ~gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~~~--~~~~~g----~~~~~-~~~l~~~l~~aDiVint~P~  219 (287)
T TIGR02853       150 HGSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSADLA--RITEMG----LIPFP-LNKLEEKVAEIDIVINTIPA  219 (287)
T ss_pred             CCCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHCC----Ceeec-HHHHHHHhccCCEEEECCCh
Confidence            4469999995 9999999999998886  8999998653211  111111    11111 13456778999999998532


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe-cCCCcc
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNS  150 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~-tNP~d~  150 (300)
                      +         ++  +    .+   .+....|+++++.+ ++|-.+
T Consensus       220 ~---------ii--~----~~---~l~~~k~~aliIDlas~Pg~t  246 (287)
T TIGR02853       220 L---------VL--T----AD---VLSKLPKHAVIIDLASKPGGT  246 (287)
T ss_pred             H---------Hh--C----HH---HHhcCCCCeEEEEeCcCCCCC
Confidence            1         11  1    11   23334567888766 678664

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK09242 tropinone reductase; Provisional

Probab=95.87  E-value=0.086  Score=46.94  Aligned_cols=78  Identities=14%  Similarity=0.176  Sum_probs=48.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEecC-Cc----------ccccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN-DQ----------LGQAL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t-~d----------~~~a~   94 (300)
                      .+++.|+||+|.+|..++..|+..|.  +|++.+++...  ....++........+..+... .+          ..+.+
T Consensus         9 ~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (257)
T PRK09242          9 GQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW   86 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999887  89999986432  122233322111122221110 11          11234


Q ss_pred             CCCCEEEEcCCCC
Q 022263           95 EDSDVVIIPAGVP  107 (300)
Q Consensus        95 ~~aDiVIi~ag~~  107 (300)
                      ...|++|.++|..
T Consensus        87 g~id~li~~ag~~   99 (257)
T PRK09242         87 DGLHILVNNAGGN   99 (257)
T ss_pred             CCCCEEEECCCCC
Confidence            5789999999863

>PRK07074 short chain dehydrogenase; Provisional

Probab=95.87  E-value=0.05  Score=48.40  Aligned_cols=34  Identities=44%  Similarity=0.497  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .++.|+||+|.+|..++..|++.+.  +++++|.+.
T Consensus         3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~   36 (257)
T PRK07074          3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDA   36 (257)
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3699999999999999999998886  899999854

>PRK07904 short chain dehydrogenase; Provisional

Probab=95.87  E-value=0.07  Score=47.85  Aligned_cols=115  Identities=18%  Similarity=0.152  Sum_probs=64.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCC-CCCEEEEEecCCcc---cHHHHhccccCCCcEEEEec-CCc---c----cccc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTP---GVAADVGHINTRSEVAGYMG-NDQ---L----GQAL   94 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~-~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~-t~d---~----~~a~   94 (300)
                      +.++|.|+||+|.+|.+++..|++.+ .  .|++.+++...   ....++..... ..+..+.. -+|   .    ++..
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHH
Confidence            45689999999999999999988874 5  89999886432   12233432111 02222111 011   1    1111


Q ss_pred             --CCCCEEEEcCCCCCCCCCcc------hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEec
Q 022263           95 --EDSDVVIIPAGVPRKPGMTR------DDLFNINAG----IVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        95 --~~aDiVIi~ag~~~~~g~~r------~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~t  145 (300)
                        .+.|++|..+|.........      .+.+..|..    +.+.+.+.+.+.+. +.++++|
T Consensus        84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~is  145 (253)
T PRK07904         84 AGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMS  145 (253)
T ss_pred             hcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEe
Confidence              37999999888753221111      123455543    33556777766554 4555554

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.86  E-value=0.028  Score=53.23  Aligned_cols=36  Identities=19%  Similarity=0.418  Sum_probs=31.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ...||.|+|+ |.+|+.++..|+..|+ ++|.|+|.+.
T Consensus        23 ~~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence            4458999996 9999999999999886 6899999863

>PRK07577 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.035  Score=48.54  Aligned_cols=34  Identities=29%  Similarity=0.284  Sum_probs=30.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ++|.|+||+|.+|..++..|+..|.  ++++++++.
T Consensus         4 k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~   37 (234)
T PRK07577          4 RTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA   37 (234)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            5899999999999999999999886  899998854

>PRK06949 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.09  Score=46.65  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .++|.|+||+|.+|++++..|+..+.  +|++.+++.
T Consensus         9 ~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~   43 (258)
T PRK06949          9 GKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV   43 (258)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            46899999999999999999998887  899998864

>PRK05867 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.15  Score=45.24  Aligned_cols=114  Identities=19%  Similarity=0.242  Sum_probs=63.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cc-------ccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LG-------QAL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~-------~a~   94 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.+++...  ....++.+..  ..+..+.. -+|   .+       +.+
T Consensus         9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T PRK05867          9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            34799999999999999999999887  89999886432  1222232211  12222111 111   11       123


Q ss_pred             CCCCEEEEcCCCCCCC---CCcc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEec
Q 022263           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ...|++|.++|.....   ..+.   ...+..|+.    +.+.+.+.+.+....+.+++++
T Consensus        85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s  145 (253)
T PRK05867         85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA  145 (253)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            4789999999864311   1111   123344544    3444455554444345565554

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=95.85  E-value=0.056  Score=50.84  Aligned_cols=95  Identities=19%  Similarity=0.203  Sum_probs=58.5

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHH-hCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~-~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      ....++|+|||. |.||..++..+. .-|.  +|+.+|.........++       .++ +   .++++.++.||+|++.
T Consensus       142 ~L~gktvGIiG~-G~IG~~va~~l~~~fgm--~V~~~~~~~~~~~~~~~-------~~~-~---~~l~ell~~sDvv~lh  207 (323)
T PRK15409        142 DVHHKTLGIVGM-GRIGMALAQRAHFGFNM--PILYNARRHHKEAEERF-------NAR-Y---CDLDTLLQESDFVCII  207 (323)
T ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHHhcCCC--EEEEECCCCchhhHHhc-------CcE-e---cCHHHHHHhCCEEEEe
Confidence            456679999995 999999998876 4555  78888864321111111       112 1   2567889999999997


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ....  +         ++..++.  .+.+..-.|++++|+++-
T Consensus       208 ~plt--~---------~T~~li~--~~~l~~mk~ga~lIN~aR  237 (323)
T PRK15409        208 LPLT--D---------ETHHLFG--AEQFAKMKSSAIFINAGR  237 (323)
T ss_pred             CCCC--h---------HHhhccC--HHHHhcCCCCeEEEECCC
Confidence            5321  1         1222221  123344458999999863

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=95.84  E-value=0.16  Score=45.50  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=30.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +++.|+||+|.+|.+++..|+..+.  ++++.|.+.
T Consensus        11 k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~   44 (265)
T PRK07097         11 KIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQ   44 (265)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            5799999999999999999999887  789988754

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.84  E-value=0.11  Score=53.28  Aligned_cols=137  Identities=13%  Similarity=0.132  Sum_probs=82.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcc----ccccCCCCEEEEc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL----GQALEDSDVVIIP  103 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~----~~a~~~aDiVIi~  103 (300)
                      ..+|.|+|. |.+|+.++..|...+.  +++++|.++.+-+  .+.+...  .+-.-.+ ++.    +..+++||.+|++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~v~--~~~~~g~--~v~~GDa-t~~~~L~~agi~~A~~vvv~  471 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDHIE--TLRKFGM--KVFYGDA-TRMDLLESAGAAKAEVLINA  471 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHHHH--HHHhcCC--eEEEEeC-CCHHHHHhcCCCcCCEEEEE
Confidence            368999996 9999999999998887  8999998764322  2222211  1211111 222    2346799999988


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec-CCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHH
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS-NPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK  182 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t-NP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~  182 (300)
                      ...+           +.|    ..++..+++..|+..++.-+ |+.+      .+.++..|   -+.++--+...+.++-
T Consensus       472 ~~d~-----------~~n----~~i~~~ar~~~p~~~iiaRa~d~~~------~~~L~~~G---ad~v~~e~~e~sl~l~  527 (621)
T PRK03562        472 IDDP-----------QTS----LQLVELVKEHFPHLQIIARARDVDH------YIRLRQAG---VEKPERETFEGALKSG  527 (621)
T ss_pred             eCCH-----------HHH----HHHHHHHHHhCCCCeEEEEECCHHH------HHHHHHCC---CCEEehhhHhHHHHHH
Confidence            4321           334    34555677778887665544 4433      22344444   4445443444555666


Q ss_pred             HHHHHHcCCCCCce
Q 022263          183 TFYAGKANVNVAEV  196 (300)
Q Consensus       183 ~~la~~l~v~~~~V  196 (300)
                      +.+-+.+|++++++
T Consensus       528 ~~~L~~lg~~~~~~  541 (621)
T PRK03562        528 RLVLESLGLGPYEA  541 (621)
T ss_pred             HHHHHHcCCCHHHH
Confidence            66667787776544

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.83  E-value=0.081  Score=51.95  Aligned_cols=128  Identities=17%  Similarity=0.334  Sum_probs=75.1

Q ss_pred             CCceEEEEcCCCChHHH-HHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~-~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      +.+||.|+|. |..|.+ +|..|...|.  ++...|.+... ...+|...    .+..+.+. + .+.+.++|+||.+.|
T Consensus         6 ~~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~----gi~~~~~~-~-~~~~~~~d~vv~spg   75 (461)
T PRK00421          6 RIKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLEL----GAIIFIGH-D-AENIKDADVVVYSSA   75 (461)
T ss_pred             CCCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHC----CCEEeCCC-C-HHHCCCCCEEEECCC
Confidence            4458999996 999988 7989999998  89999986532 22234332    23322222 2 255789999999988


Q ss_pred             CCCCCCCcchhhhhhhHHHHHH--HHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022263          106 VPRKPGMTRDDLFNINAGIVKD--LCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~--i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~  167 (300)
                      .|...- ......+.+++++.+  ++..+.+. ...+-|--||==.+.+.+++++++..| +.+
T Consensus        76 i~~~~~-~~~~a~~~~i~i~~~~e~~~~~~~~-~~~I~ITGTnGKTTTt~ll~~iL~~~g-~~~  136 (461)
T PRK00421         76 IPDDNP-ELVAARELGIPVVRRAEMLAELMRF-RTSIAVAGTHGKTTTTSLLAHVLAEAG-LDP  136 (461)
T ss_pred             CCCCCH-HHHHHHHCCCcEEeHHHHHHHHHcc-CcEEEEECCCCHHHHHHHHHHHHHhcC-CCC
Confidence            874211 112222445666533  32222211 122222235655566677888888776 443

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=95.81  E-value=0.063  Score=47.40  Aligned_cols=115  Identities=17%  Similarity=0.303  Sum_probs=61.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC-c--ccHHHHhccccCCCcEEEEec-CCc---cccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGVAADVGHINTRSEVAGYMG-NDQ---LGQA-------   93 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~-~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------   93 (300)
                      ..++.|+||+|.+|++++..|+..+.  ++++.+... .  +....++.+..  ..+..+.. .+|   +.++       
T Consensus         6 ~~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (247)
T PRK12935          6 GKVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNH   81 (247)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999998886  676654322 1  11122332211  12222111 111   1122       


Q ss_pred             cCCCCEEEEcCCCCCCCCC------cchhhhhhhHHHHHHHHHHHHhh---CCCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRKPGM------TRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g~------~r~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (300)
                      +...|+||++||.......      .-.+.+..|..-...+.+.+.++   ...+.+++++.
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  143 (247)
T PRK12935         82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS  143 (247)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence            2347999999987432111      12233455655444444444432   23445665554

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=95.81  E-value=0.035  Score=53.33  Aligned_cols=63  Identities=21%  Similarity=0.354  Sum_probs=45.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ...++|+|||. |+||+.++..+...|.  +++.+|......     ..     ... +   .++++.+++||+|++...
T Consensus       114 l~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~~-----~~-----~~~-~---~~l~ell~~aDiV~lh~P  176 (381)
T PRK00257        114 LAERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQEA-----EG-----DGD-F---VSLERILEECDVISLHTP  176 (381)
T ss_pred             cCcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCccccc-----cc-----Ccc-c---cCHHHHHhhCCEEEEeCc
Confidence            34569999995 9999999999988887  999999743210     00     011 1   256688899999998753

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.79  E-value=0.061  Score=52.65  Aligned_cols=128  Identities=20%  Similarity=0.218  Sum_probs=80.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      .+||+|+|- |.-|.+++..|...|.  ++..+|.++......+..  .....+....+..+. +...++|+||..-|.|
T Consensus         7 ~~kv~V~GL-G~sG~a~a~~L~~~G~--~v~v~D~~~~~~~~~~~~--~~~~~i~~~~g~~~~-~~~~~~d~vV~SPGi~   80 (448)
T COG0771           7 GKKVLVLGL-GKSGLAAARFLLKLGA--EVTVSDDRPAPEGLAAQP--LLLEGIEVELGSHDD-EDLAEFDLVVKSPGIP   80 (448)
T ss_pred             CCEEEEEec-ccccHHHHHHHHHCCC--eEEEEcCCCCccchhhhh--hhccCceeecCccch-hccccCCEEEECCCCC
Confidence            679999995 9999999999999887  999999865431101110  011133333344444 6789999999998876


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHhh--CCCeEEEEecCCCcccHHHHHHHHHHhC
Q 022263          108 RKPGMTRDDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP~d~~~~i~~~~~~~~~  163 (300)
                      ...-+ -.......++++-++--..+..  +| -+-|--||==.+.|.+++++++..|
T Consensus        81 ~~~p~-v~~A~~~gi~i~~dieL~~r~~~~~p-~vaITGTNGKTTTTsli~~~l~~~G  136 (448)
T COG0771          81 PTHPL-VEAAKAAGIEIIGDIELFYRLSGEAP-IVAITGTNGKTTTTSLIAHLLKAAG  136 (448)
T ss_pred             CCCHH-HHHHHHcCCcEEeHHHHHHHhcCCCC-EEEEECCCchHHHHHHHHHHHHhcC
Confidence            32211 1112245566666665555543  33 2223336766677778888888776

>PRK06500 short chain dehydrogenase; Provisional

Probab=95.76  E-value=0.16  Score=44.62  Aligned_cols=102  Identities=20%  Similarity=0.145  Sum_probs=58.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEe-cCCcc----------ccccCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQL----------GQALED   96 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~----------~~a~~~   96 (300)
                      .++|.|+||+|.+|+.++..|+..+.  ++++++.+.....  ++.+.. ...+..+. ...|.          .+.+..
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~--~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (249)
T PRK06500          6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLE--AARAEL-GESALVIRADAGDVAAQKALAQALAEAFGR   80 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHH--HHHHHh-CCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            35899999999999999999999887  8999987542111  111100 01121111 01111          122357


Q ss_pred             CCEEEEcCCCCCCCC---Ccc---hhhhhhhHHHHHHHHHHHHh
Q 022263           97 SDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAK  134 (300)
Q Consensus        97 aDiVIi~ag~~~~~g---~~r---~dl~~~N~~i~~~i~~~i~~  134 (300)
                      .|++|+.+|......   .+.   ...+..|..-...+.+.+.+
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~  124 (249)
T PRK06500         81 LDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLP  124 (249)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            899999998643211   111   22455666656666666654

>PRK12746 short chain dehydrogenase; Provisional

Probab=95.75  E-value=0.19  Score=44.41  Aligned_cols=32  Identities=25%  Similarity=0.362  Sum_probs=27.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEe
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD   61 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D   61 (300)
                      .++|.|+||+|.+|++++..|+.+|.  ++.+.+
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~   37 (254)
T PRK12746          6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHY   37 (254)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEc
Confidence            35899999999999999999998886  676653

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=95.74  E-value=0.031  Score=51.42  Aligned_cols=61  Identities=18%  Similarity=0.231  Sum_probs=43.8

Q ss_pred             EEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        33 IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |||. |.+|..++..|...++  +|.+||+++.+..  ++....    ...   +.++.++++++|+||++..
T Consensus         1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~~~--~l~~~g----~~~---~~s~~~~~~~advVil~vp   61 (288)
T TIGR01692         1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDAVE--EAVAAG----AQA---AASPAEAAEGADRVITMLP   61 (288)
T ss_pred             CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHHHH--HHHHcC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence            5894 9999999999999887  8999998654322  233211    111   2356678999999999864

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.73  E-value=0.16  Score=46.75  Aligned_cols=119  Identities=18%  Similarity=0.264  Sum_probs=77.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCCcEEEEec----CCccc-------cc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG----NDQLG-------QA   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~~-------~a   93 (300)
                      ..+.|.|+||+.-+|.++|+.|+..|.  .++|+....  .+-...++.......++.....    .++.+       .-
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~   88 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH   88 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence            445789999999999999999999997  778887643  2222244444332211221110    11111       34


Q ss_pred             cCCCCEEEEcCCCCCCCCC-c------chhhhhh----hHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263           94 LEDSDVVIIPAGVPRKPGM-T------RDDLFNI----NAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g~-~------r~dl~~~----N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      +.+.|+.|..||..+ .+. +      ..+.++.    .+-+.+...+.+++.+ ++.|++++....
T Consensus        89 fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG  153 (282)
T KOG1205|consen   89 FGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAG  153 (282)
T ss_pred             cCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEecccc
Confidence            689999999999876 331 1      1223343    4577899999999988 899888877666

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.73  E-value=0.13  Score=45.94  Aligned_cols=34  Identities=18%  Similarity=0.261  Sum_probs=30.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~   63 (300)
                      .++|.|+||+|.+|..++..|+..|.  .+++++.+
T Consensus        15 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~   48 (258)
T PRK06935         15 GKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHG   48 (258)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCC
Confidence            45899999999999999999999887  88999876

>PRK09186 flagellin modification protein A; Provisional

Probab=95.71  E-value=0.15  Score=45.13  Aligned_cols=35  Identities=23%  Similarity=0.248  Sum_probs=30.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .++|.|+||+|.+|.+++..|+..+.  ++++.++++
T Consensus         4 ~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~   38 (256)
T PRK09186          4 GKTILITGAGGLIGSALVKAILEAGG--IVIAADIDK   38 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCh
Confidence            35899999999999999999999887  899998754

>PRK08226 short chain dehydrogenase; Provisional

Probab=95.71  E-value=0.084  Score=47.12  Aligned_cols=35  Identities=29%  Similarity=0.442  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..++.|+||+|.+|+.++..|+..|.  ++++++.+.
T Consensus         6 ~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~   40 (263)
T PRK08226          6 GKTALITGALQGIGEGIARVFARHGA--NLILLDISP   40 (263)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCH
Confidence            35899999999999999999999887  899998854

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.71  E-value=0.076  Score=46.48  Aligned_cols=115  Identities=19%  Similarity=0.304  Sum_probs=62.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cHHHHhccccCCCcEEEEec-CCc---ccc-------c
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMG-NDQ---LGQ-------A   93 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~-t~d---~~~-------a   93 (300)
                      .++|.|+||+|.+|++++..|+..|.  ++++...+...   ....++....  ..+..+.. -++   +.+       .
T Consensus         5 ~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (248)
T PRK05557          5 GKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALG--GKALAVQGDVSDAESVERAVDEAKAE   80 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999998886  77666654321   1112222111  11221110 111   111       1


Q ss_pred             cCCCCEEEEcCCCCCCCC---Ccch---hhhhhhHHHHHHHHHHHHhhC---CCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRKPG---MTRD---DLFNINAGIVKDLCSAIAKYC---PNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g---~~r~---dl~~~N~~i~~~i~~~i~~~~---p~a~viv~tN  146 (300)
                      +.+.|.||+++|......   .+..   ..+..|......+.+.+.++.   ....+++++.
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss  142 (248)
T PRK05557         81 FGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISS  142 (248)
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            246899999998643211   1111   223456665555666665442   2345555554

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=95.70  E-value=0.072  Score=46.49  Aligned_cols=113  Identities=19%  Similarity=0.259  Sum_probs=63.2

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHHHHhccccCCCcEEEEec--C--Ccccccc-------CC
Q 022263           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG--N--DQLGQAL-------ED   96 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~--t--~d~~~a~-------~~   96 (300)
                      |.|+|++|.+|+.++..|.+++.  ++++.+.+..   .....++.+...  .+..+..  +  .++++++       ..
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYGV--KALGVVCDVSDREDVKAVVEEIEEELGP   76 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            46899999999999999999887  8999987531   112223332211  1221111  1  1122222       34


Q ss_pred             CCEEEEcCCCCCCC---C---CcchhhhhhhHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 022263           97 SDVVIIPAGVPRKP---G---MTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (300)
Q Consensus        97 aDiVIi~ag~~~~~---g---~~r~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  147 (300)
                      .|+||+.+|.....   +   ....+.+..|..-...+.+.+.++   ...+.++++|..
T Consensus        77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~  136 (239)
T TIGR01830        77 IDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSV  136 (239)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence            69999999864211   1   112334566776666666665543   224456656543

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK09072 short chain dehydrogenase; Provisional

Probab=95.70  E-value=0.091  Score=47.01  Aligned_cols=35  Identities=40%  Similarity=0.550  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..+|.|+||+|.+|..++..|+..|.  +|++++++.
T Consensus         5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~   39 (263)
T PRK09072          5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNA   39 (263)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence            35799999999999999999999887  899999864

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.69  E-value=0.036  Score=54.00  Aligned_cols=69  Identities=25%  Similarity=0.315  Sum_probs=45.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec--C--Cccccc-cCCCCEEEEc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG--N--DQLGQA-LEDSDVVIIP  103 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--t--~d~~~a-~~~aDiVIi~  103 (300)
                      |||.|+|+ |.+|..++..|...+.  +++++|.++....  .+.+..   .+..+.+  +  ..++++ ++++|.||++
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~~~--~~~~~~---~~~~~~gd~~~~~~l~~~~~~~a~~vi~~   72 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEERLR--RLQDRL---DVRTVVGNGSSPDVLREAGAEDADLLIAV   72 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHHHH--HHHhhc---CEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence            68999996 9999999999998887  8999998654322  222100   1111111  1  123344 7899999997


Q ss_pred             CC
Q 022263          104 AG  105 (300)
Q Consensus       104 ag  105 (300)
                      .+
T Consensus        73 ~~   74 (453)
T PRK09496         73 TD   74 (453)
T ss_pred             cC
Confidence            53

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=95.69  E-value=0.48  Score=42.21  Aligned_cols=116  Identities=15%  Similarity=0.198  Sum_probs=63.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHHHHhccccCCCcEEEEe-cCCccc----------c
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQLG----------Q   92 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~-~t~d~~----------~   92 (300)
                      +.+++.|+||+|.+|..++..|+..+.  .+++......   .....++....  ..+..+. .-+|.+          +
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~   81 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAVK   81 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999886  6777765332   11122232211  1121111 111211          1


Q ss_pred             ccCCCCEEEEcCCCCCCC---CCcch---hhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           93 ALEDSDVVIIPAGVPRKP---GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        93 a~~~aDiVIi~ag~~~~~---g~~r~---dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .+...|++|..+|.....   ..+..   ..+..|+.    +.+...+.+.+....+.+|++|.
T Consensus        82 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS  145 (261)
T PRK08936         82 EFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS  145 (261)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence            123579999999864321   11111   23445533    33555666666555566666654

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=95.68  E-value=0.012  Score=54.10  Aligned_cols=105  Identities=24%  Similarity=0.314  Sum_probs=68.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhC----CCC-----CEEEEEecCCc--ccHHHHhcccc--CCCcEEEEecCCcccccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLN----PLV-----SRLALYDIANT--PGVAADVGHIN--TRSEVAGYMGNDQLGQAL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~----~~~-----~el~L~D~~~~--~g~~~dl~~~~--~~~~v~~~~~t~d~~~a~   94 (300)
                      .-||.|.|| |..|..++..|...    |+-     +.++++|.+-.  +.. .||.+..  +-..... ....++.+++
T Consensus        25 d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r-~~l~~~~~~~a~~~~~-~~~~~L~e~i  101 (279)
T cd05312          25 DQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDR-KDLTPFKKPFARKDEE-KEGKSLLEVV  101 (279)
T ss_pred             hcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCC-CcchHHHHHHHhhcCc-ccCCCHHHHH
Confidence            349999996 99999998877654    652     58999998531  110 1111111  0000000 0124788999


Q ss_pred             C--CCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263           95 E--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus        95 ~--~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      +  ++|++|=+.+.+   |-           +-+++.+.|.+++++.+|+-.|||..
T Consensus       102 ~~v~ptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~  144 (279)
T cd05312         102 KAVKPTVLIGLSGVG---GA-----------FTEEVVRAMAKSNERPIIFALSNPTS  144 (279)
T ss_pred             HhcCCCEEEEeCCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCcCC
Confidence            9  899988765433   21           23678888999999999999999975

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=95.68  E-value=0.098  Score=47.48  Aligned_cols=76  Identities=26%  Similarity=0.272  Sum_probs=42.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      .+|||+|.||+|.||+.+...+.+.+-..=+.-+|.......-.|.........+... .++|+.....++|++|=.
T Consensus         1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~-v~~~~~~~~~~~DV~IDF   76 (266)
T COG0289           1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVP-VTDDLLLVKADADVLIDF   76 (266)
T ss_pred             CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCce-eecchhhcccCCCEEEEC
Confidence            3789999999999999999988887643223445553321111122222111111111 123445667889987753

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=95.65  E-value=0.026  Score=51.65  Aligned_cols=69  Identities=23%  Similarity=0.233  Sum_probs=44.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhC--CCCCEEE-EEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLN--PLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~--~~~~el~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      +++||+|||. |.+|..++..|...  ++  ++. ++|.++.+..  ++.....  ....   .+++++.+.++|+|+++
T Consensus         5 ~~irIGIIG~-G~IG~~~a~~L~~~~~~~--el~aV~dr~~~~a~--~~a~~~g--~~~~---~~~~eell~~~D~Vvi~   74 (271)
T PRK13302          5 PELRVAIAGL-GAIGKAIAQALDRGLPGL--TLSAVAVRDPQRHA--DFIWGLR--RPPP---VVPLDQLATHADIVVEA   74 (271)
T ss_pred             CeeEEEEECc-cHHHHHHHHHHHhcCCCe--EEEEEECCCHHHHH--HHHHhcC--CCcc---cCCHHHHhcCCCEEEEC
Confidence            4589999995 99999999888763  33  554 7787643322  2222110  0111   13566778899999999


Q ss_pred             CC
Q 022263          104 AG  105 (300)
Q Consensus       104 ag  105 (300)
                      +.
T Consensus        75 tp   76 (271)
T PRK13302         75 AP   76 (271)
T ss_pred             CC
Confidence            64

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.64  E-value=0.055  Score=48.79  Aligned_cols=36  Identities=25%  Similarity=0.441  Sum_probs=31.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +..||+|+|+ |.+|+.++..|+..|+ ++|.++|-+.
T Consensus        31 ~~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   66 (245)
T PRK05690         31 KAARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFDT   66 (245)
T ss_pred             cCCeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            4569999996 9999999999999885 6899999853

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.63  E-value=0.063  Score=49.81  Aligned_cols=67  Identities=16%  Similarity=0.228  Sum_probs=46.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ...||+|+|+ |.+|..++..|...|.  ++..+|++... ..+.++   .    .+.. ...++.+.++++|+||.+.
T Consensus       151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~---G----~~~~-~~~~l~~~l~~aDiVI~t~  218 (296)
T PRK08306        151 HGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITEM---G----LSPF-HLSELAEEVGKIDIIFNTI  218 (296)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc---C----Ceee-cHHHHHHHhCCCCEEEECC
Confidence            4569999995 9999999999998885  89999986432 122211   1    1111 1134557789999999985

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=95.62  E-value=0.24  Score=44.01  Aligned_cols=36  Identities=22%  Similarity=0.388  Sum_probs=31.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +.++|.|+||+|.+|.+++..|...|.  ++++.|.+.
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~   45 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINA   45 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            346899999999999999999999887  889998754

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.61  E-value=0.029  Score=50.55  Aligned_cols=113  Identities=20%  Similarity=0.177  Sum_probs=62.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEE-EecCCc-------cccccCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAG-YMGNDQ-------LGQALEDS   97 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~-~~~t~d-------~~~a~~~a   97 (300)
                      .++|.|+||+|.+|..++..|+..|.  .+++.++++....  ..++....   .+.. .....+       ..+.+.+.
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLVV---GGPLDVTDPASFAAFLDAVEADLGPI   79 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccce---EEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            35899999999999999999999887  7999987543211  11221110   0110 000001       11224578


Q ss_pred             CEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           98 DVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        98 DiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      |++|.+||......   .+   -...+..|..    +.+.+.+.+.+. ..+.++++|.
T Consensus        80 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS  137 (273)
T PRK07825         80 DVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR-GRGHVVNVAS  137 (273)
T ss_pred             CEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEcC
Confidence            99999998743211   11   1223445554    444555555543 3456666654

>PRK07062 short chain dehydrogenase; Provisional

Probab=95.60  E-value=0.25  Score=44.11  Aligned_cols=115  Identities=14%  Similarity=0.137  Sum_probs=63.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEe-cCCcc----------ccccC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL----------GQALE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d~----------~~a~~   95 (300)
                      ..+.|+||+|.+|.+++..|+..|.  +|++.+++..  .....++........+..+. .-+|.          .+.+.
T Consensus         9 k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T PRK07062          9 RVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG   86 (265)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999887  8999998643  22222332211111222211 01121          11235


Q ss_pred             CCCEEEEcCCCCCCCC---Ccc---hhhhhhh----HHHHHHHHHHHHhhCCCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~~r---~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ..|++|..||......   .+.   ...+..|    ....+.+.+.+++.. .+.+++++.
T Consensus        87 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS  146 (265)
T PRK07062         87 GVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA-AASIVCVNS  146 (265)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CcEEEEecc
Confidence            6899999998642111   111   1122223    334566666665433 455666553

>PRK07985 oxidoreductase; Provisional

Probab=95.58  E-value=0.12  Score=47.47  Aligned_cols=115  Identities=19%  Similarity=0.140  Sum_probs=62.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc---HHHHhccccCCCcEEEEec-CCcc----------cccc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGYMG-NDQL----------GQAL   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g---~~~dl~~~~~~~~v~~~~~-t~d~----------~~a~   94 (300)
                      +++.|+||+|.+|.+++..|+..|.  ++++.+.+....   ...++.... ...+..+.. -+|.          .+.+
T Consensus        50 k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  126 (294)
T PRK07985         50 RKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEEC-GRKAVLLPGDLSDEKFARSLVHEAHKAL  126 (294)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHc-CCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5899999999999999999999987  888887643211   111111111 111221111 1121          1224


Q ss_pred             CCCCEEEEcCCCCCC--C--CCcc---hhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~--~--g~~r---~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tN  146 (300)
                      ...|++|+.||....  +  ..+.   ...+..|+.-...+.+.+.++ ...+.+|++|.
T Consensus       127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS  186 (294)
T PRK07985        127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSS  186 (294)
T ss_pred             CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECC
Confidence            567999999986321  1  1122   233556665444444444433 12466666664

>PLN02306 hydroxypyruvate reductase

Probab=95.57  E-value=0.072  Score=51.33  Aligned_cols=104  Identities=20%  Similarity=0.304  Sum_probs=60.1

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHH-hCCCCCEEEEEecCCcccHH---HHhccc---cCCCcEEEEecCCccccccCCC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTPGVA---ADVGHI---NTRSEVAGYMGNDQLGQALEDS   97 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~-~~~~~~el~L~D~~~~~g~~---~dl~~~---~~~~~v~~~~~t~d~~~a~~~a   97 (300)
                      +....+|+|||. |.||+.+|..+. .-|.  +|..||........   ..+...   ......... ...++++.++.|
T Consensus       162 ~L~gktvGIiG~-G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~L~ell~~s  237 (386)
T PLN02306        162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWK-RASSMEEVLREA  237 (386)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhccccccccccccccc-ccCCHHHHHhhC
Confidence            455679999995 999999998875 4465  89999975321110   011000   000001100 123688999999


Q ss_pred             CEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        98 DiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      |+|++..-.  .+         ++-.++.+  +.+....|++++|+++
T Consensus       238 DiV~lh~Pl--t~---------~T~~lin~--~~l~~MK~ga~lIN~a  272 (386)
T PLN02306        238 DVISLHPVL--DK---------TTYHLINK--ERLALMKKEAVLVNAS  272 (386)
T ss_pred             CEEEEeCCC--Ch---------hhhhhcCH--HHHHhCCCCeEEEECC
Confidence            999997432  11         12222221  3344445799999985

>PRK08324 short chain dehydrogenase; Validated

Probab=95.57  E-value=0.17  Score=52.31  Aligned_cols=36  Identities=31%  Similarity=0.419  Sum_probs=31.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..++|.|+||+|.+|..++..|+..|.  +|+++|++.
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~  456 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDE  456 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCH
Confidence            346899999999999999999999887  899999865

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=95.55  E-value=0.011  Score=53.61  Aligned_cols=124  Identities=19%  Similarity=0.223  Sum_probs=76.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCC----CC-----CEEEEEecCCc----ccHHHHhcccc--CCCcEEEEecCCcccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNP----LV-----SRLALYDIANT----PGVAADVGHIN--TRSEVAGYMGNDQLGQ   92 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~----~~-----~el~L~D~~~~----~g~~~dl~~~~--~~~~v~~~~~t~d~~~   92 (300)
                      ..||.+.|| |..|..++.+|...+    +-     +.++++|..-.    +....+.....  +...-.   ...++.+
T Consensus        25 d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~---~~~~L~e  100 (254)
T cd00762          25 EHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPER---ESGDLED  100 (254)
T ss_pred             hcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCccc---ccCCHHH
Confidence            359999996 999999998776533    21     38999998531    11100100000  000111   1247889


Q ss_pred             ccC--CCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc--ccHHHHHHHHHHhCCCCCC
Q 022263           93 ALE--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAGTYNEK  168 (300)
Q Consensus        93 a~~--~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d--~~~~i~~~~~~~~~~~~~~  168 (300)
                      +++  ++|++|=+.+.+   |           -+-+++.+.|.+++++.+|+=.|||..  ..++  -++++.+   +..
T Consensus       101 av~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp--e~a~~~t---~G~  161 (254)
T cd00762         101 AVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEINERPVIFALSNPTSKAECTA--EEAYTAT---EGR  161 (254)
T ss_pred             HHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhcCCCCEEEECCCcCCccccCH--HHHHhhc---CCC
Confidence            999  999988776543   2           123678888999999999999999986  3332  2233322   234


Q ss_pred             cEEEee
Q 022263          169 KLFGVT  174 (300)
Q Consensus       169 kviG~t  174 (300)
                      .++++.
T Consensus       162 ai~AtG  167 (254)
T cd00762         162 AIFASG  167 (254)
T ss_pred             EEEEEC
Confidence            677774

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.54  E-value=0.03  Score=53.67  Aligned_cols=76  Identities=17%  Similarity=0.230  Sum_probs=49.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCccccccCCCCEEEEcC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      .++.||.|+|+ |.+|...+..+...|.  ++..+|.+..+.+  .+.... ...+.. +....++.+.++++|+||.++
T Consensus       165 l~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~~--~l~~~~-g~~v~~~~~~~~~l~~~l~~aDvVI~a~  238 (370)
T TIGR00518       165 VEPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRLR--QLDAEF-GGRIHTRYSNAYEIEDAVKRADLLIGAV  238 (370)
T ss_pred             CCCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHHH--HHHHhc-CceeEeccCCHHHHHHHHccCCEEEEcc
Confidence            35668999996 9999999999988886  7999998653222  111110 011111 111124567789999999988


Q ss_pred             CCC
Q 022263          105 GVP  107 (300)
Q Consensus       105 g~~  107 (300)
                      +.+
T Consensus       239 ~~~  241 (370)
T TIGR00518       239 LIP  241 (370)
T ss_pred             ccC
Confidence            654

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK07478 short chain dehydrogenase; Provisional

Probab=95.54  E-value=0.24  Score=43.98  Aligned_cols=155  Identities=15%  Similarity=0.182  Sum_probs=81.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc-------cC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA-------LE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~~   95 (300)
                      +++.|+||+|.+|..++..|+..|.  +|++.+.++.+  ....++.+..  ..+..+.. -++   .++.       +.
T Consensus         7 k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T PRK07478          7 KVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERFG   82 (254)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999887  89999885422  1222333221  11222111 111   1111       33


Q ss_pred             CCCEEEEcCCCCC--CC--CCcc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCC
Q 022263           96 DSDVVIIPAGVPR--KP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (300)
Q Consensus        96 ~aDiVIi~ag~~~--~~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~  164 (300)
                      ..|++|..||...  .+  ..+.   ...+..|..    ..+.+.+.+.+. ..+.+++++.....          .. .
T Consensus        83 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~-~~~~iv~~sS~~~~----------~~-~  150 (254)
T PRK07478         83 GLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR-GGGSLIFTSTFVGH----------TA-G  150 (254)
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEechHhh----------cc-C
Confidence            6899999998632  22  1121   233555653    445555555543 33455555532210          00 1


Q ss_pred             CCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       165 ~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                      .+..-.++.+..-...+-..++++++  +..|++..+
T Consensus       151 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  185 (254)
T PRK07478        151 FPGMAAYAASKAGLIGLTQVLAAEYG--AQGIRVNAL  185 (254)
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHh--hcCEEEEEE
Confidence            33333344443323345566667664  345555544

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.54  E-value=0.047  Score=53.72  Aligned_cols=91  Identities=22%  Similarity=0.270  Sum_probs=60.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ....+|+|+|. |.+|..+|..+...|.  +|..+|+++.+. .+..  + .    .+.    .+++++++.+|+||.+.
T Consensus       252 LaGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~--~-G----~~~----~~leell~~ADIVI~at  317 (476)
T PTZ00075        252 IAGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM--E-G----YQV----VTLEDVVETADIFVTAT  317 (476)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh--c-C----cee----ccHHHHHhcCCEEEECC
Confidence            34568999995 9999999999988776  899998865432 1111  1 1    111    24567899999999985


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                      |.+               .++.  .+.+....|.+++++++-.
T Consensus       318 Gt~---------------~iI~--~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        318 GNK---------------DIIT--LEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             Ccc---------------cccC--HHHHhccCCCcEEEEcCCC
Confidence            421               1121  1234445589999998765

>PRK07109 short chain dehydrogenase; Provisional

Probab=95.53  E-value=0.27  Score=46.09  Aligned_cols=114  Identities=14%  Similarity=0.130  Sum_probs=63.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc-------c
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA-------L   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~   94 (300)
                      ..+|.|+||+|.+|..++..|+..|.  +|+++++++..  ....++.....  .+..+.. -+|   .+++       +
T Consensus         8 ~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g~--~~~~v~~Dv~d~~~v~~~~~~~~~~~   83 (334)
T PRK07109          8 RQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAGG--EALAVVADVADAEAVQAAADRAEEEL   83 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCC--cEEEEEecCCCHHHHHHHHHHHHHHC
Confidence            35799999999999999999999887  89999985421  12223322111  1221110 112   1111       3


Q ss_pred             CCCCEEEEcCCCCCCC---CCcch---hhhhhh----HHHHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r~---dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|..+|.....   ..+..   ..+..|    ....+.+.+.+.+.. .+.+|+++.
T Consensus        84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~-~g~iV~isS  144 (334)
T PRK07109         84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD-RGAIIQVGS  144 (334)
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEeCC
Confidence            4689999999864211   11111   122333    344556666665543 355666543

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.53  E-value=0.078  Score=47.20  Aligned_cols=114  Identities=16%  Similarity=0.228  Sum_probs=61.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCcccc-------ccCCCCE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQ-------ALEDSDV   99 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~-------a~~~aDi   99 (300)
                      .+++.|+||+|.+|..++..|++.|.  ++++.+.+.. ....++.+.... .+.. .....+.++       .+...|+
T Consensus         7 ~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~~~-~~~~Dl~~~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06463          7 GKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKGVF-TIKCDVGNRDQVKKSKEVVEKEFGRVDV   82 (255)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCCCe-EEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            35899999999999999999999887  7887765332 111122221100 0110 000011111       2346899


Q ss_pred             EEEcCCCCCC-C--CCcc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263          100 VIIPAGVPRK-P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       100 VIi~ag~~~~-~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +|.++|.... +  ..+.   ...+..|..    +.+.+.+.+.+. ..+.+|+++.
T Consensus        83 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~isS  138 (255)
T PRK06463         83 LVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLS-KNGAIVNIAS  138 (255)
T ss_pred             EEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcC
Confidence            9999987431 1  1121   123344544    356666666543 3455665553

>PRK06444 prephenate dehydrogenase; Provisional

Probab=95.53  E-value=0.028  Score=49.07  Aligned_cols=28  Identities=21%  Similarity=0.358  Sum_probs=24.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLA   58 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~   58 (300)
                      |||+||||+|.+|+.++..+.+.|+  ++.
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~--~v~   28 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGL--GVY   28 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCC--EEE
Confidence            6999999999999999999998887  554

>PRK08703 short chain dehydrogenase; Provisional

Probab=95.53  E-value=0.89  Score=39.86  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|++++++.
T Consensus         6 ~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~   40 (239)
T PRK08703          6 DKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ   40 (239)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            45899999999999999999999887  899999865

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.51  E-value=0.071  Score=52.37  Aligned_cols=124  Identities=23%  Similarity=0.305  Sum_probs=73.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc---HHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g---~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      .||.|+|. |..|.+++..|...|.  ++..+|.++...   ...++...    .+..+.+. +..+.+.++|+||.+.|
T Consensus        15 ~~i~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~~~~~~~~~l~~~----gi~~~~~~-~~~~~~~~~dlVV~Spg   86 (458)
T PRK01710         15 KKVAVVGI-GVSNIPLIKFLVKLGA--KVTAFDKKSEEELGEVSNELKEL----GVKLVLGE-NYLDKLDGFDVIFKTPS   86 (458)
T ss_pred             CeEEEEcc-cHHHHHHHHHHHHCCC--EEEEECCCCCccchHHHHHHHhC----CCEEEeCC-CChHHhccCCEEEECCC
Confidence            48999995 9999999999999997  899999854211   11223322    23333222 22355789999999988


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe--cCCCcccHHHHHHHHHHhC
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIAAEVFKKAG  163 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~--tNP~d~~~~i~~~~~~~~~  163 (300)
                      .+...- ......+.+++++.++- .+.+..+ ..+|-+  ||==.+.+.+++.+++..+
T Consensus        87 i~~~~p-~~~~a~~~~i~i~s~~e-~~~~~~~-~~vIaITGTnGKTTT~~ll~~iL~~~g  143 (458)
T PRK01710         87 MRIDSP-ELVKAKEEGAYITSEME-EFIKYCP-AKVFGVTGSDGKTTTTTLIYEMLKEEG  143 (458)
T ss_pred             CCCCch-HHHHHHHcCCcEEechH-HhhhhcC-CCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence            764221 12222345677765542 2323322 223334  4544455567777777654

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=95.50  E-value=0.17  Score=44.87  Aligned_cols=36  Identities=17%  Similarity=0.174  Sum_probs=32.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +.++|.|+||+|.+|..++..|+..|.  .|+++|.+.
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~   45 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNA   45 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCH
Confidence            456899999999999999999998887  899999864

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.50  E-value=0.037  Score=49.23  Aligned_cols=36  Identities=33%  Similarity=0.546  Sum_probs=31.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ...||+|+|+ |.+|+.++..|+..|+ +++.|+|-+.
T Consensus        20 ~~~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~   55 (228)
T cd00757          20 KNARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV   55 (228)
T ss_pred             hCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            3459999995 9999999999999885 6899999853

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.50  E-value=0.0083  Score=57.43  Aligned_cols=74  Identities=26%  Similarity=0.262  Sum_probs=45.4

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEE--ecC--CccccccCCCCEEEEcCCC
Q 022263           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY--MGN--DQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~--~~t--~d~~~a~~~aDiVIi~ag~  106 (300)
                      |.|+|| |.+|+.++..|++.....++++.|++..+....  ........+...  ..+  .++.+.++++|+||.++|.
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp   77 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERL--AEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP   77 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHH--HT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHH--HhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence            789997 999999999999887655899999976433221  111011122221  111  1255678999999999875


Q ss_pred             C
Q 022263          107 P  107 (300)
Q Consensus       107 ~  107 (300)
                      .
T Consensus        78 ~   78 (386)
T PF03435_consen   78 F   78 (386)
T ss_dssp             G
T ss_pred             c
Confidence            3

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=95.49  E-value=0.16  Score=44.53  Aligned_cols=34  Identities=24%  Similarity=0.273  Sum_probs=29.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+|.|+||+|.+|++++..|...|.  .+++.|.+.
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~   36 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSG   36 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCc
Confidence            3789999999999999999998886  899998764

>PRK07578 short chain dehydrogenase; Provisional

Probab=95.49  E-value=0.055  Score=46.33  Aligned_cols=66  Identities=21%  Similarity=0.291  Sum_probs=42.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      |++.|+||+|.+|..++..|.+. .  ++++.+.+.. ....|+.+..   .+.      ...+.+...|++|..+|..
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~--~vi~~~r~~~-~~~~D~~~~~---~~~------~~~~~~~~id~lv~~ag~~   66 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-H--EVITAGRSSG-DVQVDITDPA---SIR------ALFEKVGKVDAVVSAAGKV   66 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-C--cEEEEecCCC-ceEecCCChH---HHH------HHHHhcCCCCEEEECCCCC
Confidence            58999999999999999999877 3  7898887532 1112333211   000      0011234689999999864

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.48  E-value=0.039  Score=51.23  Aligned_cols=57  Identities=18%  Similarity=0.374  Sum_probs=45.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ....+|+|||.+|.||..++..|...+.  ++.+++...                       .++.+.++.||+||.+.|
T Consensus       157 l~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsavg  211 (301)
T PRK14194        157 LTGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAVG  211 (301)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecC
Confidence            3456999999756999999999999887  888886421                       144577899999999988


Q ss_pred             CC
Q 022263          106 VP  107 (300)
Q Consensus       106 ~~  107 (300)
                      .+
T Consensus       212 ~~  213 (301)
T PRK14194        212 RP  213 (301)
T ss_pred             Ch
Confidence            65

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.47  E-value=0.11  Score=45.58  Aligned_cols=69  Identities=17%  Similarity=0.124  Sum_probs=47.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      .||.|||| |.+|..-+..|...|-  +|++++.+.. ....++.+..   .++...+..+ .+.++++|+||.+-+
T Consensus        10 k~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~-~~l~~l~~~~---~i~~~~~~~~-~~dl~~~~lVi~at~   78 (205)
T TIGR01470        10 RAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELE-SELTLLAEQG---GITWLARCFD-ADILEGAFLVIAATD   78 (205)
T ss_pred             CeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCC-HHHHHHHHcC---CEEEEeCCCC-HHHhCCcEEEEECCC
Confidence            49999997 9999999988988875  8999987543 1222333221   3444333333 356899999998744

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=95.44  E-value=0.027  Score=52.41  Aligned_cols=94  Identities=17%  Similarity=0.102  Sum_probs=59.7

Q ss_pred             hhhhhhhhhccccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcE
Q 022263            4 SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEV   81 (300)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v   81 (300)
                      ..+-.++|-|--+-.-+++. + ....++|||+ |..|...+..+..-.-+++|.+||+++.  ...+.++.+.. ...+
T Consensus        95 ~~lT~~RTaA~salaa~~l~-~-da~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~-~~~v  170 (301)
T PRK06407         95 NRLGQIRTGAVTAYATSILH-K-NVENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF-GVDI  170 (301)
T ss_pred             chHHHHHHHHHHHHHHHHhh-c-CCcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc-CCcE
Confidence            34445555444444444554 2 4679999995 9999877766665444689999999764  33344444321 2234


Q ss_pred             EEEecCCccccccCCCCEEEEcC
Q 022263           82 AGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        82 ~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ...   ++.++++++||+|+.+-
T Consensus       171 ~~~---~~~~eav~~aDIV~taT  190 (301)
T PRK06407        171 RPV---DNAEAALRDADTITSIT  190 (301)
T ss_pred             EEe---CCHHHHHhcCCEEEEec
Confidence            432   46789999999998653

>PRK12744 short chain dehydrogenase; Provisional

Probab=95.44  E-value=0.56  Score=41.67  Aligned_cols=33  Identities=15%  Similarity=0.180  Sum_probs=27.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~   62 (300)
                      .+++.|+||+|.+|.+++..|+..|.  ++++++.
T Consensus         8 ~k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~   40 (257)
T PRK12744          8 GKVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHY   40 (257)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--cEEEEec
Confidence            35899999999999999999998886  6666654

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.44  E-value=0.032  Score=52.18  Aligned_cols=91  Identities=20%  Similarity=0.300  Sum_probs=54.6

Q ss_pred             hhhhhhhccccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHh-CCCCCEEEEEecCCcc--cHHHHhccccCCCcEE
Q 022263            6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANTP--GVAADVGHINTRSEVA   82 (300)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~-~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~   82 (300)
                      +-.++|-|-.+..-+++... ...+|+|||+ |.+|...+..+.. .+ ..+|.++|+.+.+  ..+.++.+.  ...+.
T Consensus       104 lT~~RTaa~sala~~~La~~-~~~~v~iiG~-G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~~--g~~~~  178 (314)
T PRK06141        104 LTARRTAAASALAASYLARK-DASRLLVVGT-GRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRAQ--GFDAE  178 (314)
T ss_pred             hhcchhHHHHHHHHHHhCCC-CCceEEEECC-cHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHhc--CCceE
Confidence            33444444444443444433 4568999995 9999998875554 44 4689999986543  233334321  11233


Q ss_pred             EEecCCccccccCCCCEEEEcC
Q 022263           83 GYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        83 ~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ..   .+.++++++||+|+.+.
T Consensus       179 ~~---~~~~~av~~aDIVi~aT  197 (314)
T PRK06141        179 VV---TDLEAAVRQADIISCAT  197 (314)
T ss_pred             Ee---CCHHHHHhcCCEEEEee
Confidence            32   45667899999986553

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=95.44  E-value=0.057  Score=48.35  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+++.|+||+|.+|..++..|+..+.  ++++.|++.
T Consensus         9 ~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~   43 (266)
T PRK06171          9 GKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG   43 (266)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            35799999999999999999999887  899998854

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.43  E-value=0.034  Score=52.20  Aligned_cols=73  Identities=14%  Similarity=0.268  Sum_probs=47.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ..+++|||+ |.+|...+..+....-+++|.++|+++.+..  +.++.+. ....+..+   ++++++++++|+|+.+-.
T Consensus       127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~-~~~~~~~~---~~~~~~~~~aDiVi~aT~  201 (325)
T PRK08618        127 AKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK-FNTEIYVV---NSADEAIEEADIIVTVTN  201 (325)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh-cCCcEEEe---CCHHHHHhcCCEEEEccC
Confidence            458999995 9999877766554333579999999764332  2333321 12223332   466788999999998743

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.42  E-value=0.17  Score=50.41  Aligned_cols=109  Identities=19%  Similarity=0.290  Sum_probs=62.7

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhcccc--CCC-c----EEEEe--cCCcc--
Q 022263           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHIN--TRS-E----VAGYM--GNDQL--   90 (300)
Q Consensus        23 ~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~--~~~-~----v~~~~--~t~d~--   90 (300)
                      .+..++.||.|+|+ |.+|...+..+...|-  +|+.+|.++.+ .++..+-...  ... .    -..|.  .+.++  
T Consensus       160 aG~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~  236 (509)
T PRK09424        160 AGKVPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIK  236 (509)
T ss_pred             cCCcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHH
Confidence            34566789999996 9999988887877775  79999996532 2232221110  000 0    00000  01111  


Q ss_pred             ------ccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHH-HHHHHHHHHhhCCCeEEEEecCC
Q 022263           91 ------GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGI-VKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus        91 ------~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i-~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                            .+.++++|+||.+++.|.++..          .. .++..+.+   .|.+.++.++-+
T Consensus       237 ~~~~~~~~~~~gaDVVIetag~pg~~aP----------~lit~~~v~~m---kpGgvIVdvg~~  287 (509)
T PRK09424        237 AEMALFAEQAKEVDIIITTALIPGKPAP----------KLITAEMVASM---KPGSVIVDLAAE  287 (509)
T ss_pred             HHHHHHHhccCCCCEEEECCCCCcccCc----------chHHHHHHHhc---CCCCEEEEEccC
Confidence                  1224689999999998743221          12 24444433   478888878764

>PRK07775 short chain dehydrogenase; Provisional

Probab=95.42  E-value=0.18  Score=45.58  Aligned_cols=36  Identities=28%  Similarity=0.300  Sum_probs=30.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +++.+.|+||+|.+|.+++..|+.+|.  +|++.+.+.
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~~   44 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGF--PVALGARRV   44 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            345799999999999999999999887  888888743

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=95.39  E-value=0.022  Score=53.94  Aligned_cols=70  Identities=21%  Similarity=0.387  Sum_probs=45.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      ||+|+||+|.+|..++..|...++ ..+++++...+..|+...+..    ..+....  .+ .++++++|+||++.|.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~----~~~~~~~--~~-~~~~~~~D~v~~a~g~   71 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKG----KELEVNE--AK-IESFEGIDIALFSAGG   71 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCC----eeEEEEe--CC-hHHhcCCCEEEECCCH
Confidence            699999999999999998888543 236777765544444333221    1122111  12 2457899999998774

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=95.39  E-value=0.11  Score=50.92  Aligned_cols=129  Identities=19%  Similarity=0.308  Sum_probs=74.6

Q ss_pred             eEEEEcCCCChHHH-HHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263           30 KVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (300)
Q Consensus        30 KI~IIGaaG~VG~~-~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~  108 (300)
                      +|.++|. |-.|.+ +|..|...|.  ++...|..... ...+|+..    .+..+.+ .+ .+.++++|+||.+.|.+.
T Consensus         1 ~~~~iGi-ggsGm~~la~~L~~~G~--~v~~~D~~~~~-~~~~l~~~----gi~~~~g-~~-~~~~~~~d~vV~spgi~~   70 (448)
T TIGR01082         1 KIHFVGI-GGIGMSGIAEILLNRGY--QVSGSDIAENA-TTKRLEAL----GIPIYIG-HS-AENLDDADVVVVSAAIKD   70 (448)
T ss_pred             CEEEEEE-CHHHHHHHHHHHHHCCC--eEEEECCCcch-HHHHHHHC----cCEEeCC-CC-HHHCCCCCEEEECCCCCC
Confidence            4789996 999987 8999999998  89999975533 22234332    2333333 33 255788999999988874


Q ss_pred             CCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe--cCCCcccHHHHHHHHHHhCCCCCCcEE
Q 022263          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIAAEVFKKAGTYNEKKLF  171 (300)
Q Consensus       109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~--tNP~d~~~~i~~~~~~~~~~~~~~kvi  171 (300)
                      .. .......+.+++++.+.-- +.+...+..+|-+  ||==.+.+.+++++++..| +++.-++
T Consensus        71 ~~-p~~~~a~~~~i~v~~~~el-~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g-~~~~~~~  132 (448)
T TIGR01082        71 DN-PEIVEAKERGIPVIRRAEM-LAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG-LDPTVVV  132 (448)
T ss_pred             CC-HHHHHHHHcCCceEeHHHH-HHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC-CCCeEEE
Confidence            21 1122223445555533221 2222111123333  5554556677888888776 5444443

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=95.39  E-value=0.19  Score=45.85  Aligned_cols=87  Identities=22%  Similarity=0.259  Sum_probs=50.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEE-EEEecCCcccHHH-HhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRL-ALYDIANTPGVAA-DVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el-~L~D~~~~~g~~~-dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ||||+|||+ |.+|..++..+...+.. ++ .+++.+....... .+..     .+..   ++|+++.-.+.|+|+.+++
T Consensus         1 m~rVgIiG~-G~iG~~~~~~l~~~~~~-~l~~v~~~~~~~~~~~~~~~~-----~~~~---~~d~~~l~~~~DvVve~t~   70 (265)
T PRK13303          1 MMKVAMIGF-GAIGAAVLELLEHDPDL-RVDWVIVPEHSIDAVRRALGE-----AVRV---VSSVDALPQRPDLVVECAG   70 (265)
T ss_pred             CcEEEEECC-CHHHHHHHHHHhhCCCc-eEEEEEEcCCCHHHHhhhhcc-----CCee---eCCHHHhccCCCEEEECCC
Confidence            689999996 99999999888776433 33 3334332211111 1111     1222   2355443356999999975


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeE
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI  140 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~  140 (300)
                      .                ....+++..+-+.+.+.+
T Consensus        71 ~----------------~~~~e~~~~aL~aGk~Vv   89 (265)
T PRK13303         71 H----------------AALKEHVVPILKAGIDCA   89 (265)
T ss_pred             H----------------HHHHHHHHHHHHcCCCEE
Confidence            2                234567777666655533

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.38  E-value=0.2  Score=42.04  Aligned_cols=66  Identities=11%  Similarity=0.098  Sum_probs=43.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ..+|.|||| |.+|...+..|...+.  +|++++.+..+ +..++.      .+.......+ ++.++++|+||.+.
T Consensus        13 ~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~-~l~~l~------~i~~~~~~~~-~~dl~~a~lViaaT   78 (157)
T PRK06719         13 NKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICK-EMKELP------YITWKQKTFS-NDDIKDAHLIYAAT   78 (157)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCH-HHHhcc------CcEEEecccC-hhcCCCceEEEECC
Confidence            459999997 9999999999998887  89999743221 222221      1111111122 35689999998874

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.37  E-value=0.13  Score=50.00  Aligned_cols=102  Identities=16%  Similarity=0.277  Sum_probs=61.0

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc---c-ccccCCCCEE
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---L-GQALEDSDVV  100 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~-~~a~~~aDiV  100 (300)
                      ..+++|.|+|+ |.+|..++..|...+.  +++++|.++..-  .++.+...  .+..+.+. ++   + +..++++|.|
T Consensus       229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~--~v~vid~~~~~~--~~~~~~~~--~~~~i~gd~~~~~~L~~~~~~~a~~v  301 (453)
T PRK09496        229 KPVKRVMIVGG-GNIGYYLAKLLEKEGY--SVKLIERDPERA--EELAEELP--NTLVLHGDGTDQELLEEEGIDEADAF  301 (453)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHH--HHHHHHCC--CCeEEECCCCCHHHHHhcCCccCCEE
Confidence            45689999996 9999999999988887  899999865322  12222111  11111111 11   1 2456899999


Q ss_pred             EEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       101 Ii~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      |++.+..           ..|..+    +..+++++++-++..+.+|.+
T Consensus       302 i~~~~~~-----------~~n~~~----~~~~~~~~~~~ii~~~~~~~~  335 (453)
T PRK09496        302 IALTNDD-----------EANILS----SLLAKRLGAKKVIALVNRPAY  335 (453)
T ss_pred             EECCCCc-----------HHHHHH----HHHHHHhCCCeEEEEECCcch
Confidence            8874311           345443    223344556656666677765

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.36  E-value=0.054  Score=48.75  Aligned_cols=36  Identities=22%  Similarity=0.457  Sum_probs=31.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +..||.|+|+ |-+|+.++..|+..|+ ++|.|+|.+.
T Consensus        23 ~~~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~   58 (240)
T TIGR02355        23 KASRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT   58 (240)
T ss_pred             hCCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence            4458999996 9999999999999885 6899999864

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=95.36  E-value=0.057  Score=46.58  Aligned_cols=97  Identities=20%  Similarity=0.342  Sum_probs=64.0

Q ss_pred             CCCceEEEEcCCCChHHHHHH-HHHhCCCCCEEEEEecCCc-ccHHHHhccccCCCcEEEEecCCccccccC--CCCEEE
Q 022263           26 VPDRKVAVLGAAGGIGQPLAL-LMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVI  101 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~-~L~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~--~aDiVI  101 (300)
                      .++.+|.|||+ |++|.+++. .+....-.+-+..+|+++. -|.  ...+    ..+...   ++++.-++  +.|+.|
T Consensus        82 ~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~--~~~~----v~V~~~---d~le~~v~~~dv~iai  151 (211)
T COG2344          82 DKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGT--KIGD----VPVYDL---DDLEKFVKKNDVEIAI  151 (211)
T ss_pred             CcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCc--ccCC----eeeech---HHHHHHHHhcCccEEE
Confidence            46779999996 999999985 4444444567889999763 221  1111    123322   35555555  889999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcc
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~  150 (300)
                      +|+.                .+-.+++++.+.+.+=++++ ++| |+..
T Consensus       152 LtVP----------------a~~AQ~vad~Lv~aGVkGIl-NFt-Pv~l  182 (211)
T COG2344         152 LTVP----------------AEHAQEVADRLVKAGVKGIL-NFT-PVRL  182 (211)
T ss_pred             EEcc----------------HHHHHHHHHHHHHcCCceEE-ecc-ceEe
Confidence            9852                24467888889888888864 666 8873

>PRK05599 hypothetical protein; Provisional

Probab=95.35  E-value=0.76  Score=40.81  Aligned_cols=154  Identities=12%  Similarity=0.129  Sum_probs=79.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEec-CCc----------cccccC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQ----------LGQALE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d----------~~~a~~   95 (300)
                      |.+.|+||++.+|..++..|.+ +.  .+++.+++..  +..+.++...... .+..+.. -.|          ..+.+.
T Consensus         1 ~~vlItGas~GIG~aia~~l~~-g~--~Vil~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g   76 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLCH-GE--DVVLAARRPEAAQGLASDLRQRGAT-SVHVLSFDAQDLDTHRELVKQTQELAG   76 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHhC-CC--EEEEEeCCHHHHHHHHHHHHhccCC-ceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence            4588999999999999999884 64  8999987543  2222334322111 1111110 011          122245


Q ss_pred             CCCEEEEcCCCCCCCC---Ccc---hhhhhhh----HHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCC
Q 022263           96 DSDVVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY  165 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~~r---~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~  165 (300)
                      ..|++|..+|......   .+.   .+.+..|    ..+.+.+.+.+.+...++.++++|.-...           .+ .
T Consensus        77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~-----------~~-~  144 (246)
T PRK05599         77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGW-----------RA-R  144 (246)
T ss_pred             CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccc-----------cC-C
Confidence            7899999998743211   111   1122223    23344555666654445777777654431           01 2


Q ss_pred             CCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEE
Q 022263          166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPV  200 (300)
Q Consensus       166 ~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v  200 (300)
                      |..-.++.+.---..+...++.+++  +..|++..
T Consensus       145 ~~~~~Y~asKaa~~~~~~~la~el~--~~~I~v~~  177 (246)
T PRK05599        145 RANYVYGSTKAGLDAFCQGLADSLH--GSHVRLII  177 (246)
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHhc--CCCceEEE
Confidence            2222334432222345566777764  34455443

>PRK07035 short chain dehydrogenase; Provisional

Probab=95.35  E-value=0.13  Score=45.51  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=30.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+|.|+||+|.+|.+++..|...|.  .|+++|.+.
T Consensus         9 k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~   42 (252)
T PRK07035          9 KIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKL   42 (252)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999999886  899999854

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=95.35  E-value=0.018  Score=53.83  Aligned_cols=89  Identities=20%  Similarity=0.291  Sum_probs=51.0

Q ss_pred             hhhhhccccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHh-CCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEE
Q 022263            8 SVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANT--PGVAADVGHINTRSEVAGY   84 (300)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~-~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~   84 (300)
                      .++|-|--+..-+|+..+ ...+++|+|+ |..+..-+..+.. .+ +++|.+||+++.  +..+.++.+ . ...+...
T Consensus       109 ~~RTaA~sala~~~La~~-~~~~l~viGa-G~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~~~  183 (313)
T PF02423_consen  109 ALRTAAVSALAARYLARP-DARTLGVIGA-GVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRD-L-GVPVVAV  183 (313)
T ss_dssp             HHHHHHHHHHHHHHHS-T-T--EEEEE---SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHC-C-CTCEEEE
T ss_pred             hhHHHHHHHHHHHHhCcC-CCceEEEECC-CHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhcc-c-cccceec
Confidence            344444333344444433 3458999995 9999776665554 45 789999999763  344555665 2 2244432


Q ss_pred             ecCCccccccCCCCEEEEcC
Q 022263           85 MGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        85 ~~t~d~~~a~~~aDiVIi~a  104 (300)
                         .+.++++++||+|+.+-
T Consensus       184 ---~~~~~av~~aDii~taT  200 (313)
T PF02423_consen  184 ---DSAEEAVRGADIIVTAT  200 (313)
T ss_dssp             ---SSHHHHHTTSSEEEE--
T ss_pred             ---cchhhhcccCCEEEEcc
Confidence               46789999999988653

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.34  E-value=0.11  Score=50.39  Aligned_cols=90  Identities=18%  Similarity=0.223  Sum_probs=58.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ...+|+|+|+ |.+|..++..+...|.  +++.+|+++.+. .+..+   .    ...    .+.+++++++|+||.+.|
T Consensus       201 ~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~---G----~~~----~~~~e~v~~aDVVI~atG  266 (413)
T cd00401         201 AGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAME---G----YEV----MTMEEAVKEGDIFVTTTG  266 (413)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhc---C----CEE----ccHHHHHcCCCEEEECCC
Confidence            3469999996 9999999999888886  788899875432 22211   1    111    123467899999998865


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                      .+               .++..  ..+....+.+++++++.+
T Consensus       267 ~~---------------~~i~~--~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         267 NK---------------DIITG--EHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             CH---------------HHHHH--HHHhcCCCCcEEEEeCCC
Confidence            32               22221  113344578899998865

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK08339 short chain dehydrogenase; Provisional

Probab=95.33  E-value=0.43  Score=42.88  Aligned_cols=114  Identities=11%  Similarity=0.176  Sum_probs=64.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc------cCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA------LED   96 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a------~~~   96 (300)
                      ..+.|+||+|.+|..++..|+..|.  +|++.|++...  ....++.... ...+..+.. -+|   .++.      +..
T Consensus         9 k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~   85 (263)
T PRK08339          9 KLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE   85 (263)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence            4689999999999999999999887  89999986422  1222232211 112222111 011   1122      235


Q ss_pred             CCEEEEcCCCCCCC---CCcch---hhhhhh----HHHHHHHHHHHHhhCCCeEEEEecC
Q 022263           97 SDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        97 aDiVIi~ag~~~~~---g~~r~---dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .|++|..+|.....   ..+..   ..+..|    ..+.+.+.+.+++.. .+.+|++|.
T Consensus        86 iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS  144 (263)
T PRK08339         86 PDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTS  144 (263)
T ss_pred             CcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence            89999999875321   11211   223334    445677777776543 456666654

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.32  E-value=0.13  Score=50.23  Aligned_cols=92  Identities=16%  Similarity=0.185  Sum_probs=59.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      ...+|+|+|+ |.+|..++..+...|.  +|+.+|+++.+..... .+ .    ...    .+++++++++|+||.+.|.
T Consensus       211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~-~~-G----~~v----~~l~eal~~aDVVI~aTG~  277 (425)
T PRK05476        211 AGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQAA-MD-G----FRV----MTMEEAAELGDIFVTATGN  277 (425)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHH-hc-C----CEe----cCHHHHHhCCCEEEECCCC
Confidence            4458999996 9999999999988886  8999998764322110 11 1    111    1345778999999887542


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (300)
                                     ..++..  +.+....+.+++++++-+-
T Consensus       278 ---------------~~vI~~--~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        278 ---------------KDVITA--EHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             ---------------HHHHHH--HHHhcCCCCCEEEEcCCCC
Confidence                           222221  2233344688999887543

>PRK08628 short chain dehydrogenase; Provisional

Probab=95.31  E-value=0.25  Score=43.91  Aligned_cols=35  Identities=26%  Similarity=0.409  Sum_probs=30.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..+|.|+||+|.+|..++..|++.|.  ++++.+.++
T Consensus         7 ~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~   41 (258)
T PRK08628          7 DKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSA   41 (258)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCCh
Confidence            34899999999999999999999887  788888755

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=95.30  E-value=0.11  Score=47.48  Aligned_cols=73  Identities=29%  Similarity=0.334  Sum_probs=42.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC-c-ccH-HHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T-PGV-AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~-~-~g~-~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ||||+|+|++|.+|..++..+...+-+.=+.++|... . .+. ..++.... ...+..   ++|+++...++|+||.+.
T Consensus         1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~---~~d~~~l~~~~DvVIdfT   76 (266)
T TIGR00036         1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPV---TDDLEAVETDPDVLIDFT   76 (266)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCcee---eCCHHHhcCCCCEEEECC
Confidence            4799999966999999998888654343455677422 1 121 11121111 112332   245655445689998874

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=95.30  E-value=0.57  Score=42.00  Aligned_cols=31  Identities=29%  Similarity=0.353  Sum_probs=27.3

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~   62 (300)
                      .+.|+||+|.+|.+++..|.+.|.  +|++.+.
T Consensus         3 ~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~   33 (267)
T TIGR02685         3 AAVVTGAAKRIGSSIAVALHQEGY--RVVLHYH   33 (267)
T ss_pred             EEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcC
Confidence            588999999999999999999887  7888754

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PLN02858 fructose-bisphosphate aldolase

Probab=95.30  E-value=0.062  Score=59.64  Aligned_cols=68  Identities=18%  Similarity=0.309  Sum_probs=49.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      +.+++|++|| .|.||..++..|...|+  ++..||+++.+..  ++.+..    ...   ..+..+++++||+||++..
T Consensus       322 ~~~~~IGfIG-lG~MG~~mA~~L~~~G~--~V~v~dr~~~~~~--~l~~~G----a~~---~~s~~e~~~~aDvVi~~V~  389 (1378)
T PLN02858        322 KPVKRIGFIG-LGAMGFGMASHLLKSNF--SVCGYDVYKPTLV--RFENAG----GLA---GNSPAEVAKDVDVLVIMVA  389 (1378)
T ss_pred             cCCCeEEEEC-chHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHcC----Cee---cCCHHHHHhcCCEEEEecC
Confidence            3467999999 59999999999999988  8999998653322  233221    111   1345678899999999865

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=95.29  E-value=0.9  Score=40.54  Aligned_cols=33  Identities=15%  Similarity=0.328  Sum_probs=28.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~   62 (300)
                      .++|.|+||++.+|.+++..|+..|.  .|++.+.
T Consensus         8 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~   40 (260)
T PRK08416          8 GKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYN   40 (260)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcC
Confidence            45899999999999999999999887  7887754

>PRK12747 short chain dehydrogenase; Provisional

Probab=95.29  E-value=0.49  Score=41.86  Aligned_cols=33  Identities=24%  Similarity=0.256  Sum_probs=28.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~   62 (300)
                      .+++.|+||+|.+|.+++..|+..|.  ++++.+.
T Consensus         4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~   36 (252)
T PRK12747          4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYG   36 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcC
Confidence            35899999999999999999999887  7888754

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.25  E-value=0.32  Score=42.80  Aligned_cols=30  Identities=27%  Similarity=0.445  Sum_probs=26.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY   60 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~   60 (300)
                      +++.|+||+|.+|..++..|+..|.  ++++.
T Consensus         5 ~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~   34 (250)
T PRK08063          5 KVALVTGSSRGIGKAIALRLAEEGY--DIAVN   34 (250)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEE
Confidence            5899999999999999999999886  66654

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.24  E-value=0.12  Score=50.34  Aligned_cols=129  Identities=18%  Similarity=0.298  Sum_probs=73.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      .++|.|+|+ |..|.+.+..|...|.  ++.++|..+.......|+...  ..+..+.+..+ +..+.++|+||.+.|.+
T Consensus         5 ~~~~~v~G~-g~~G~~~a~~l~~~g~--~v~~~d~~~~~~~~~~l~~~~--~gi~~~~g~~~-~~~~~~~d~vv~spgi~   78 (445)
T PRK04308          5 NKKILVAGL-GGTGISMIAYLRKNGA--EVAAYDAELKPERVAQIGKMF--DGLVFYTGRLK-DALDNGFDILALSPGIS   78 (445)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCchhHHHHhhcc--CCcEEEeCCCC-HHHHhCCCEEEECCCCC
Confidence            358999996 9999999999999887  899999865321112233311  13443333322 23357899999999987


Q ss_pred             CCCCCcchhhhhhhHHHHH--HHHHH-HHhhCCCeEEEEecCCCcccHHHHHHHHHHhC
Q 022263          108 RKPGMTRDDLFNINAGIVK--DLCSA-IAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~--~i~~~-i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~  163 (300)
                      ...- ......+.+++++.  +++.. +++.....+-|--||==.+.+.+++.+++..+
T Consensus        79 ~~~p-~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g  136 (445)
T PRK04308         79 ERQP-DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCG  136 (445)
T ss_pred             CCCH-HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            3211 11122234556552  23322 22222222332235554556677888887765

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.24  E-value=0.049  Score=46.36  Aligned_cols=56  Identities=27%  Similarity=0.523  Sum_probs=43.0

Q ss_pred             CCCceEEEEcCCCC-hHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           26 VPDRKVAVLGAAGG-IGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        26 ~~~~KI~IIGaaG~-VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ....||.|||+ |. +|..++..|...+.  ++.+.+...                       .++.+.+++||+||.+.
T Consensus        42 l~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat   95 (168)
T cd01080          42 LAGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVAV   95 (168)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEcC
Confidence            34569999996 87 58889999988776  688887531                       24456789999999998


Q ss_pred             CCC
Q 022263          105 GVP  107 (300)
Q Consensus       105 g~~  107 (300)
                      +.+
T Consensus        96 ~~~   98 (168)
T cd01080          96 GKP   98 (168)
T ss_pred             CCC
Confidence            765

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=95.22  E-value=0.1  Score=49.25  Aligned_cols=35  Identities=20%  Similarity=0.254  Sum_probs=27.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~   63 (300)
                      ++||+|.|+ |.||..+...|.+++.-+++.++-++
T Consensus         1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvain   35 (336)
T PRK13535          1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAIN   35 (336)
T ss_pred             CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEec
Confidence            479999997 99999998887776433567777443

>PRK08291 ectoine utilization protein EutC; Validated

Probab=95.22  E-value=0.048  Score=51.36  Aligned_cols=74  Identities=16%  Similarity=0.211  Sum_probs=48.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ..++|+|+|+ |..|...+..+....-+.+|.++++++.+.+  +.++++. ....+..   .+|+++++++||+||.+.
T Consensus       131 ~~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~-~g~~v~~---~~d~~~al~~aDiVi~aT  205 (330)
T PRK08291        131 DASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAE-LGIPVTV---ARDVHEAVAGADIIVTTT  205 (330)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhc-cCceEEE---eCCHHHHHccCCEEEEee
Confidence            4468999995 9999887777764322569999998754332  3333321 1112322   246778899999998874


Q ss_pred             C
Q 022263          105 G  105 (300)
Q Consensus       105 g  105 (300)
                      .
T Consensus       206 ~  206 (330)
T PRK08291        206 P  206 (330)
T ss_pred             C
Confidence            3

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.22  E-value=0.11  Score=50.79  Aligned_cols=125  Identities=18%  Similarity=0.260  Sum_probs=74.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--H-HHhccccCCCcEEEEecCCccc-----cccCCCCEEE
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--A-ADVGHINTRSEVAGYMGNDQLG-----QALEDSDVVI  101 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~-~dl~~~~~~~~v~~~~~t~d~~-----~a~~~aDiVI  101 (300)
                      ||.|+|+ |..|.+.|..|...|.  ++.++|.+.....  . ..|...    .++.+.+. +..     ..+.+.|.||
T Consensus         2 ~v~viG~-G~sG~s~a~~l~~~G~--~V~~~D~~~~~~~~~~~~~l~~~----gi~~~~g~-~~~~~~~~~~~~~~d~vv   73 (459)
T PRK02705          2 IAHVIGL-GRSGIAAARLLKAQGW--EVVVSDRNDSPELLERQQELEQE----GITVKLGK-PLELESFQPWLDQPDLVV   73 (459)
T ss_pred             eEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHHHHHc----CCEEEECC-ccchhhhhHHhhcCCEEE
Confidence            7999995 9999999999999997  8999998643211  1 113332    23332222 111     2477899999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhC
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAG  163 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~  163 (300)
                      .+.|.+... .......+.+++++.++.-..+...+ ..+-|--||==.+.+.+++++++..+
T Consensus        74 ~s~gi~~~~-~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g  135 (459)
T PRK02705         74 VSPGIPWDH-PTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAG  135 (459)
T ss_pred             ECCCCCCCC-HHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence            998886321 11122224566776666543333222 23333335655566677888887766

>PRK06940 short chain dehydrogenase; Provisional

Probab=95.22  E-value=0.2  Score=45.43  Aligned_cols=110  Identities=19%  Similarity=0.208  Sum_probs=56.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---cccc------cCCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQA------LEDS   97 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a------~~~a   97 (300)
                      .+.|+| +|.+|.+++..|. .|.  +|++.|++....  ...++.+..  ..+..+.. -+|   .+++      +...
T Consensus         4 ~~lItG-a~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i   77 (275)
T PRK06940          4 VVVVIG-AGGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPV   77 (275)
T ss_pred             EEEEEC-CChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence            345666 5899999999986 565  899999864321  112232211  11221110 111   1111      2468


Q ss_pred             CEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecC
Q 022263           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN  146 (300)
Q Consensus        98 DiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tN  146 (300)
                      |++|.+||.... ..+-.+.+..|..-...+.+.+.+. .+++.+++++.
T Consensus        78 d~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS  126 (275)
T PRK06940         78 TGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIAS  126 (275)
T ss_pred             CEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence            999999997522 2233345566655444444444332 12333444443

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.20  E-value=0.39  Score=44.37  Aligned_cols=113  Identities=20%  Similarity=0.367  Sum_probs=71.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEec--C---------Cccccc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG--N---------DQLGQA   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~--t---------~d~~~a   93 (300)
                      ..-.|.|+||++-+|..+|+.+++.+-  .++|+|+++.  ...+..+.+..   .+..+..  +         ...++.
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e  111 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKE  111 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHh
Confidence            334799999877899999999999886  8999999763  22233344321   1111110  0         123566


Q ss_pred             cCCCCEEEEcCCCC-CCCCC--cchh---hhhhh----HHHHHHHHHHHHhhCCCeEEEEec
Q 022263           94 LEDSDVVIIPAGVP-RKPGM--TRDD---LFNIN----AGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        94 ~~~aDiVIi~ag~~-~~~g~--~r~d---l~~~N----~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ..+.|++|..||.- .++..  ++.+   .++-|    ..+++...+.|.+.+ ++.++.++
T Consensus       112 ~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHIV~Ia  172 (300)
T KOG1201|consen  112 VGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHIVTIA  172 (300)
T ss_pred             cCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceEEEeh
Confidence            78999999999963 33332  2222   12223    467788999988764 66666554

>PRK06823 ornithine cyclodeaminase; Validated

Probab=95.18  E-value=0.048  Score=51.08  Aligned_cols=93  Identities=9%  Similarity=0.049  Sum_probs=58.3

Q ss_pred             hhhhhhhhccccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEE
Q 022263            5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVA   82 (300)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~   82 (300)
                      .|-.++|-|-.+-.-+++..+ ....++|+|+ |..+..-+..+..-.-+++|.+||+++.+.+  +..+.+.  ...+.
T Consensus       106 ~lT~~RTaA~sala~~~La~~-d~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~--~~~v~  181 (315)
T PRK06823        106 WLTALRTALAGRIVARLLAPQ-HVSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL--GFAVN  181 (315)
T ss_pred             hHHHHHHHHHHHHHHHHhcCC-CCCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc--CCcEE
Confidence            344445554444444455443 4568999995 9999877766665444689999999764333  2223322  12343


Q ss_pred             EEecCCccccccCCCCEEEEcC
Q 022263           83 GYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        83 ~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      .   .++.++++++||+|+.+-
T Consensus       182 ~---~~~~~~av~~ADIV~taT  200 (315)
T PRK06823        182 T---TLDAAEVAHAANLIVTTT  200 (315)
T ss_pred             E---ECCHHHHhcCCCEEEEec
Confidence            3   246678999999998764

>PRK06139 short chain dehydrogenase; Provisional

Probab=95.17  E-value=0.2  Score=47.08  Aligned_cols=35  Identities=31%  Similarity=0.343  Sum_probs=31.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..+|.|+||+|.+|..++..|+..|.  +|++.+.++
T Consensus         7 ~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~   41 (330)
T PRK06139          7 GAVVVITGASSGIGQATAEAFARRGA--RLVLAARDE   41 (330)
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            35899999999999999999999987  899999864

>PRK05872 short chain dehydrogenase; Provisional

Probab=95.15  E-value=0.32  Score=44.62  Aligned_cols=35  Identities=40%  Similarity=0.531  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..+|.|+||+|.+|..++..|+..|.  +|++.+++.
T Consensus         9 gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   43 (296)
T PRK05872          9 GKVVVVTGAARGIGAELARRLHARGA--KLALVDLEE   43 (296)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999999887  899999864

>PRK06932 glycerate dehydrogenase; Provisional

Probab=95.12  E-value=0.088  Score=49.28  Aligned_cols=90  Identities=14%  Similarity=0.279  Sum_probs=57.1

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ....++|+|||. |.+|+.+|..+..-|.  +|..+|....  .  +..       .. +   .++++.++.||+|++..
T Consensus       144 ~l~gktvgIiG~-G~IG~~va~~l~~fg~--~V~~~~~~~~--~--~~~-------~~-~---~~l~ell~~sDiv~l~~  205 (314)
T PRK06932        144 DVRGSTLGVFGK-GCLGTEVGRLAQALGM--KVLYAEHKGA--S--VCR-------EG-Y---TPFEEVLKQADIVTLHC  205 (314)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCcc--c--ccc-------cc-c---CCHHHHHHhCCEEEEcC
Confidence            445679999995 9999999988877676  8888875321  0  000       00 1   25678899999999985


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ...  +         .+..++.  .+.+....|++++|+++
T Consensus       206 Plt--~---------~T~~li~--~~~l~~mk~ga~lIN~a  233 (314)
T PRK06932        206 PLT--E---------TTQNLIN--AETLALMKPTAFLINTG  233 (314)
T ss_pred             CCC--h---------HHhcccC--HHHHHhCCCCeEEEECC
Confidence            321  1         1111111  12233345899999885

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=95.11  E-value=0.09  Score=44.39  Aligned_cols=57  Identities=25%  Similarity=0.471  Sum_probs=40.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ...++|+|||.++.||..++.+|.+.+-  .+.+.+..                       |.++++.++.||+||.++|
T Consensus        34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~G   88 (160)
T PF02882_consen   34 LEGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAVG   88 (160)
T ss_dssp             TTT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-SS
T ss_pred             CCCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeeec
Confidence            3556999999878899999999998765  56665431                       2355677899999999998


Q ss_pred             CC
Q 022263          106 VP  107 (300)
Q Consensus       106 ~~  107 (300)
                      .|
T Consensus        89 ~~   90 (160)
T PF02882_consen   89 KP   90 (160)
T ss_dssp             ST
T ss_pred             cc
Confidence            65

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.10  E-value=0.15  Score=49.71  Aligned_cols=117  Identities=19%  Similarity=0.196  Sum_probs=65.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCC--ccc-------cccCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND--QLG-------QALEDS   97 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~--d~~-------~a~~~a   97 (300)
                      +..++.|+||+|.+|..++..|+..+.  +++++|.........++.+......+.. ..++  +.+       +.+...
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~-Dv~~~~~~~~~~~~~~~~~g~i  285 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALAL-DITAPDAPARIAEHLAERHGGL  285 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEE-eCCCHHHHHHHHHHHHHhCCCC
Confidence            345899999999999999999999887  8999987432222222221110001111 1010  111       112368


Q ss_pred             CEEEEcCCCCCCC---CCc---chhhhhhhHHHHHHHHHHHHhh---CCCeEEEEecC
Q 022263           98 DVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (300)
Q Consensus        98 DiVIi~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (300)
                      |+||+++|.....   .++   ....+..|+.-...+.+.+...   .+.+.++++|.
T Consensus       286 d~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS  343 (450)
T PRK08261        286 DIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS  343 (450)
T ss_pred             CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence            9999999965321   111   1223455666555566655542   24566776653

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.10  E-value=0.11  Score=50.40  Aligned_cols=73  Identities=26%  Similarity=0.396  Sum_probs=50.3

Q ss_pred             ccccc-CCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcccccc
Q 022263           16 AGARG-YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL   94 (300)
Q Consensus        16 ~~~~~-~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~   94 (300)
                      .|.+. +.......++|+|||. |.+|+.+|..+...|.  +|.-||.....    +..      .+..   ..++++.+
T Consensus       138 ~w~~~~~~~~~L~gktvGIiG~-G~IG~~vA~~~~~fGm--~V~~~d~~~~~----~~~------~~~~---~~~l~ell  201 (409)
T PRK11790        138 GWNKSAAGSFEVRGKTLGIVGY-GHIGTQLSVLAESLGM--RVYFYDIEDKL----PLG------NARQ---VGSLEELL  201 (409)
T ss_pred             cccccccCcccCCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCccc----ccC------Ccee---cCCHHHHH
Confidence            35443 2233456679999995 9999999999887777  89999974211    000      1111   13678899


Q ss_pred             CCCCEEEEcC
Q 022263           95 EDSDVVIIPA  104 (300)
Q Consensus        95 ~~aDiVIi~a  104 (300)
                      +.||+|++..
T Consensus       202 ~~sDiVslh~  211 (409)
T PRK11790        202 AQSDVVSLHV  211 (409)
T ss_pred             hhCCEEEEcC
Confidence            9999999984

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=95.10  E-value=0.086  Score=47.23  Aligned_cols=111  Identities=19%  Similarity=0.138  Sum_probs=57.7

Q ss_pred             EEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHH-HHh----cccc--------CCCcEEEEecCC----------c
Q 022263           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-ADV----GHIN--------TRSEVAGYMGND----------Q   89 (300)
Q Consensus        33 IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~-~dl----~~~~--------~~~~v~~~~~t~----------d   89 (300)
                      |+||+||+|+++...|+..+...+|+++-+.+....+ ..+    .+..        ...+++.+.|.-          +
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            6899999999999888876542278877664321111 111    1110        123566654321          1


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +.+..+++|+||++|+.-. -..+..++...|+.-.+++++...+.... .++.+|
T Consensus        81 ~~~L~~~v~~IiH~Aa~v~-~~~~~~~~~~~NV~gt~~ll~la~~~~~~-~~~~iS  134 (249)
T PF07993_consen   81 YQELAEEVDVIIHCAASVN-FNAPYSELRAVNVDGTRNLLRLAAQGKRK-RFHYIS  134 (249)
T ss_dssp             HHHHHHH--EEEE--SS-S-BS-S--EEHHHHHHHHHHHHHHHTSSS----EEEEE
T ss_pred             hhccccccceeeecchhhh-hcccchhhhhhHHHHHHHHHHHHHhccCc-ceEEec
Confidence            2233478999999987531 22244456788999999999988754434 455454

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PRK08223 hypothetical protein; Validated

Probab=95.10  E-value=0.034  Score=51.28  Aligned_cols=36  Identities=22%  Similarity=0.406  Sum_probs=31.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +..||.|+|+ |-+|+.++..|+..|+ ++|.|+|-+.
T Consensus        26 ~~s~VlIvG~-GGLGs~va~~LA~aGV-G~i~lvD~D~   61 (287)
T PRK08223         26 RNSRVAIAGL-GGVGGIHLLTLARLGI-GKFTIADFDV   61 (287)
T ss_pred             hcCCEEEECC-CHHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence            3458999996 9999999999999996 6899999863

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.09  E-value=0.17  Score=44.55  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=27.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~   62 (300)
                      ..+|.|+||+|++|++++..|++.+.  ++++...
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~   38 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAK   38 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence            35899999999999999999998887  6666543

>PRK09134 short chain dehydrogenase; Provisional

Probab=95.06  E-value=0.25  Score=43.99  Aligned_cols=34  Identities=29%  Similarity=0.312  Sum_probs=28.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~   63 (300)
                      .+++.|+||+|.+|.+++..|...+.  .+++.+..
T Consensus         9 ~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~   42 (258)
T PRK09134          9 PRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNR   42 (258)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCC
Confidence            45899999999999999999998886  78777653

>PRK08017 oxidoreductase; Provisional

Probab=95.05  E-value=0.13  Score=45.52  Aligned_cols=33  Identities=27%  Similarity=0.281  Sum_probs=29.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +|.|+||+|.+|.+++..|++.|.  ++++++++.
T Consensus         4 ~vlVtGasg~IG~~la~~l~~~g~--~v~~~~r~~   36 (256)
T PRK08017          4 SVLITGCSSGIGLEAALELKRRGY--RVLAACRKP   36 (256)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            699999999999999999998887  888888754

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.03  E-value=0.32  Score=42.71  Aligned_cols=35  Identities=29%  Similarity=0.558  Sum_probs=30.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..++.|+||+|.+|..++..|...|.  .++++|.++
T Consensus         5 ~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~   39 (253)
T PRK08217          5 DKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ   39 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            34799999999999999999998886  799999865

>PRK07589 ornithine cyclodeaminase; Validated

Probab=95.02  E-value=0.05  Score=51.67  Aligned_cols=90  Identities=22%  Similarity=0.321  Sum_probs=55.7

Q ss_pred             hhhhhccccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEe
Q 022263            8 SVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM   85 (300)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~   85 (300)
                      ..+|-|--+..-+++..+ ...+++|||+ |..+...+..+..-.-+.+|.+||+.+.+  ..+.++.+.  ...+..  
T Consensus       110 ~~RTaA~sala~~~Lar~-da~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~~--  183 (346)
T PRK07589        110 ALRTAATSALAAKYLARP-DSRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP--GLRIVA--  183 (346)
T ss_pred             HHHHHHHHHHHHHHhccC-CCcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc--CCcEEE--
Confidence            344444444444444443 4568999995 99997766555443345799999997643  334445431  123333  


Q ss_pred             cCCccccccCCCCEEEEcC
Q 022263           86 GNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        86 ~t~d~~~a~~~aDiVIi~a  104 (300)
                       .++.++++++||+|+.+-
T Consensus       184 -~~~~~~av~~ADIIvtaT  201 (346)
T PRK07589        184 -CRSVAEAVEGADIITTVT  201 (346)
T ss_pred             -eCCHHHHHhcCCEEEEec
Confidence             246789999999998764

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=94.99  E-value=0.12  Score=48.30  Aligned_cols=91  Identities=20%  Similarity=0.296  Sum_probs=58.1

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ....++|+|||- |.+|+.+|..+..-|.  +|.-||..... .     +.    .+. +   .++++.++.||+|++..
T Consensus       142 ~L~gktvGIiG~-G~IG~~vA~~~~~fgm--~V~~~d~~~~~-~-----~~----~~~-~---~~l~ell~~sDvv~lh~  204 (311)
T PRK08410        142 EIKGKKWGIIGL-GTIGKRVAKIAQAFGA--KVVYYSTSGKN-K-----NE----EYE-R---VSLEELLKTSDIISIHA  204 (311)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHhhcCC--EEEEECCCccc-c-----cc----Cce-e---ecHHHHhhcCCEEEEeC
Confidence            345679999994 9999999988876666  89999974211 0     10    111 1   25678899999999985


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      -.  .+. +|. ++  |    ++   .+..-.|++++|+++
T Consensus       205 Pl--t~~-T~~-li--~----~~---~~~~Mk~~a~lIN~a  232 (311)
T PRK08410        205 PL--NEK-TKN-LI--A----YK---ELKLLKDGAILINVG  232 (311)
T ss_pred             CC--Cch-hhc-cc--C----HH---HHHhCCCCeEEEECC
Confidence            32  111 111 11  2    22   233345899999985

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=94.99  E-value=0.13  Score=46.92  Aligned_cols=95  Identities=19%  Similarity=0.181  Sum_probs=60.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCC-CEE-EEEecCCcccHHHHhccccCCCcEEEEecCCccccc-cCCCCEEEEcC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLV-SRL-ALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA-LEDSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~-~el-~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a-~~~aDiVIi~a  104 (300)
                      .+||+|||. |.+|..++..|...... -++ .++|....  ....+...     ...   .+|+++. ....|+||.+|
T Consensus         2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~~--~~~~~~~~-----~~~---~~~l~~ll~~~~DlVVE~A   70 (267)
T PRK13301          2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAAD--LPPALAGR-----VAL---LDGLPGLLAWRPDLVVEAA   70 (267)
T ss_pred             ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCHH--HHHHhhcc-----Ccc---cCCHHHHhhcCCCEEEECC
Confidence            369999995 99999999888765331 133 34554332  22233222     111   1356553 47899999998


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      +                ...++++++.+-+.+.|-+++-++==.|
T Consensus        71 ~----------------~~av~e~~~~iL~~g~dlvv~SvGALaD   99 (267)
T PRK13301         71 G----------------QQAIAEHAEGCLTAGLDMIICSAGALAD   99 (267)
T ss_pred             C----------------HHHHHHHHHHHHhcCCCEEEEChhHhcC
Confidence            6                3668889988888777766654443344

>TIGR00936 ahcY adenosylhomocysteinase

Probab=94.97  E-value=0.16  Score=49.31  Aligned_cols=91  Identities=19%  Similarity=0.221  Sum_probs=57.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      ...+|+|+|+ |.+|..++..+...|.  +++.+|.++.+.... ..+.     ...    .+.+++++++|+||.+.| 
T Consensus       194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A-~~~G-----~~v----~~leeal~~aDVVItaTG-  259 (406)
T TIGR00936       194 AGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEA-AMDG-----FRV----MTMEEAAKIGDIFITATG-  259 (406)
T ss_pred             CcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHH-HhcC-----CEe----CCHHHHHhcCCEEEECCC-
Confidence            4559999996 9999999998888776  899999876432111 1111     111    123567899999988654 


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                                    |..++..  +.+....+.+++++++-+
T Consensus       260 --------------~~~vI~~--~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       260 --------------NKDVIRG--EHFENMKDGAIVANIGHF  284 (406)
T ss_pred             --------------CHHHHHH--HHHhcCCCCcEEEEECCC
Confidence                          2233332  123333467888888653

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.96  E-value=0.15  Score=44.62  Aligned_cols=68  Identities=21%  Similarity=0.218  Sum_probs=44.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec--C---CccccccCCCCEEEEc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG--N---DQLGQALEDSDVVIIP  103 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--t---~d~~~a~~~aDiVIi~  103 (300)
                      +++.|+||+|.+|.+++..|++.+.  ++++.|++.....    .     ..+..+..  +   ....+.+...|++|..
T Consensus         6 k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~----~-----~~~~~~~~D~~~~~~~~~~~~~~id~lv~~   74 (235)
T PRK06550          6 KTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQDKPDL----S-----GNFHFLQLDLSDDLEPLFDWVPSVDILCNT   74 (235)
T ss_pred             CEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCccccc----C-----CcEEEEECChHHHHHHHHHhhCCCCEEEEC
Confidence            5799999999999999999999887  8999988542110    0     01111110  0   0111235678999999


Q ss_pred             CCCC
Q 022263          104 AGVP  107 (300)
Q Consensus       104 ag~~  107 (300)
                      +|..
T Consensus        75 ag~~   78 (235)
T PRK06550         75 AGIL   78 (235)
T ss_pred             CCCC
Confidence            9864

>PRK06487 glycerate dehydrogenase; Provisional

Probab=94.96  E-value=0.12  Score=48.45  Aligned_cols=89  Identities=20%  Similarity=0.314  Sum_probs=57.3

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      .....+|+|+|. |.+|+.+|..+..-|.  +|..||.....       +     ...    ..++++.++.||+|++..
T Consensus       145 ~l~gktvgIiG~-G~IG~~vA~~l~~fgm--~V~~~~~~~~~-------~-----~~~----~~~l~ell~~sDiv~l~l  205 (317)
T PRK06487        145 ELEGKTLGLLGH-GELGGAVARLAEAFGM--RVLIGQLPGRP-------A-----RPD----RLPLDELLPQVDALTLHC  205 (317)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCCc-------c-----ccc----ccCHHHHHHhCCEEEECC
Confidence            345579999995 9999999998887676  89889864210       0     011    125678899999999985


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      -.  .+. +|. +  -|    ++.   +....|++++|+++
T Consensus       206 Pl--t~~-T~~-l--i~----~~~---~~~mk~ga~lIN~a  233 (317)
T PRK06487        206 PL--TEH-TRH-L--IG----ARE---LALMKPGALLINTA  233 (317)
T ss_pred             CC--ChH-Hhc-C--cC----HHH---HhcCCCCeEEEECC
Confidence            32  111 111 1  12    222   33345899999986

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=94.94  E-value=0.045  Score=51.53  Aligned_cols=95  Identities=21%  Similarity=0.294  Sum_probs=65.0

Q ss_pred             hhhhhhhhhccccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcE
Q 022263            4 SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEV   81 (300)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v   81 (300)
                      ..|-.++|-|-.+.+-+++... ....++|||+ |..+..-+..+...--+.+|.+||+++.  +..+.++..... ..+
T Consensus       107 ~~lTa~RTaAasavAa~~LA~~-da~~laiIGa-G~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~-~~v  183 (330)
T COG2423         107 TRLTALRTAAASAVAAKYLARK-DASTLAIIGA-GAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGG-EAV  183 (330)
T ss_pred             ccHHHHHHHHHHHHHHHHhccC-CCcEEEEECC-cHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcC-ccc
Confidence            3455667777777777777765 4458999995 9999877776665444679999999764  334445554322 123


Q ss_pred             EEEecCCccccccCCCCEEEEcC
Q 022263           82 AGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        82 ~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ..   .++.++++++||+|+-+-
T Consensus       184 ~a---~~s~~~av~~aDiIvt~T  203 (330)
T COG2423         184 GA---ADSAEEAVEGADIVVTAT  203 (330)
T ss_pred             ee---ccCHHHHhhcCCEEEEec
Confidence            32   346789999999988863

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=94.94  E-value=0.15  Score=44.38  Aligned_cols=35  Identities=26%  Similarity=0.443  Sum_probs=30.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..||+|+|+ |.+|+.++..|+..|+ ++|.++|-+.
T Consensus        19 ~s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~   53 (198)
T cd01485          19 SAKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL   53 (198)
T ss_pred             hCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            458999996 8899999999999996 6899999753

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=94.93  E-value=0.29  Score=43.17  Aligned_cols=32  Identities=25%  Similarity=0.372  Sum_probs=27.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~   62 (300)
                      ++|.|+||+|.+|+.++..|+..+.  ++++.+.
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~--~v~~~~~   34 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGW--SVGINYA   34 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeC
Confidence            4799999999999999999999886  7777654

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=94.92  E-value=0.046  Score=48.81  Aligned_cols=74  Identities=15%  Similarity=0.098  Sum_probs=47.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      |+|.|+||+|++|+++...|...+.  +++..-++......+.   .........+.....+..+++|.|.++++.+..
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~--~v~~~~r~~~~~~~~~---~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~   74 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGH--EVRAAVRNPEAAAALA---GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLL   74 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCC--EEEEEEeCHHHHHhhc---CCcEEEEeccCCHhHHHHHhccccEEEEEeccc
Confidence            6899999999999999999998876  7777665443323222   111001111112234567889999999987644

>PRK06114 short chain dehydrogenase; Provisional

Probab=94.91  E-value=0.18  Score=44.88  Aligned_cols=34  Identities=32%  Similarity=0.494  Sum_probs=30.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +.+.|+||+|.+|.+++..|++.|.  ++++.|.+.
T Consensus         9 k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~   42 (254)
T PRK06114          9 QVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRT   42 (254)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            4789999999999999999999887  899999754

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=94.87  E-value=0.33  Score=43.34  Aligned_cols=35  Identities=20%  Similarity=0.334  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|.++
T Consensus         6 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (263)
T PRK06200          6 GQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA   40 (263)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999999887  899999864

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=94.86  E-value=0.064  Score=50.73  Aligned_cols=36  Identities=31%  Similarity=0.433  Sum_probs=27.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +||+|+||+|.+|..++..|..++.+.-+.+++...
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~   36 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPR   36 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChh
Confidence            589999999999999999888876443334446643

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=94.86  E-value=0.083  Score=51.42  Aligned_cols=102  Identities=18%  Similarity=0.268  Sum_probs=61.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      +..+|+|+|+ |.+|..++..|...|. .+|+++|.+..+..  ++...... .  ... ..++.+++.++|+||.+.+.
T Consensus       179 ~~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~--~la~~~g~-~--~i~-~~~l~~~l~~aDvVi~aT~s  250 (417)
T TIGR01035       179 KGKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYERAE--DLAKELGG-E--AVK-FEDLEEYLAEADIVISSTGA  250 (417)
T ss_pred             cCCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHHHH--HHHHHcCC-e--Eee-HHHHHHHHhhCCEEEECCCC
Confidence            3469999996 9999999998888773 48999998653322  22211100 1  111 13556788999999998765


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCc
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (300)
                      +..       +  -+.+.+    +...... ...+++-+++|-|
T Consensus       251 ~~~-------i--i~~e~l----~~~~~~~~~~~~viDla~Prd  281 (417)
T TIGR01035       251 PHP-------I--VSKEDV----ERALRERTRPLFIIDIAVPRD  281 (417)
T ss_pred             CCc-------e--EcHHHH----HHHHhcCCCCeEEEEeCCCCC
Confidence            421       0  111222    2222111 2457888899988

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.84  E-value=0.17  Score=50.26  Aligned_cols=130  Identities=19%  Similarity=0.204  Sum_probs=72.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      ..||.|+|. |..|.++|..|...|.  ++..+|.+.......+|.....  .++...+..+ .+.+.++|+||.+.|.+
T Consensus         7 ~~~i~v~G~-G~sG~s~a~~L~~~G~--~v~~~D~~~~~~~~~~L~~~~~--~~~~~~g~~~-~~~~~~~d~vv~sp~I~   80 (498)
T PRK02006          7 GPMVLVLGL-GESGLAMARWCARHGA--RLRVADTREAPPNLAALRAELP--DAEFVGGPFD-PALLDGVDLVALSPGLS   80 (498)
T ss_pred             CCEEEEEee-cHhHHHHHHHHHHCCC--EEEEEcCCCCchhHHHHHhhcC--CcEEEeCCCc-hhHhcCCCEEEECCCCC
Confidence            348999995 9999999999999897  8999998553212123433211  2233323223 35678999999998887


Q ss_pred             CCCC---CcchhhhhhhHHHHHH---HHHHHHh-----hCCCeEEEEecCCCcccHHHHHHHHHHhC
Q 022263          108 RKPG---MTRDDLFNINAGIVKD---LCSAIAK-----YCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (300)
Q Consensus       108 ~~~g---~~r~dl~~~N~~i~~~---i~~~i~~-----~~p~a~viv~tNP~d~~~~i~~~~~~~~~  163 (300)
                      ....   ......-..|++++.+   +.+.+++     +.+..+-|--||==.+.+.+++.+++..+
T Consensus        81 ~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g  147 (498)
T PRK02006         81 PLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG  147 (498)
T ss_pred             CcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            5310   0000111234443311   1222221     12233333336655566678888887765

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.84  E-value=0.2  Score=43.62  Aligned_cols=36  Identities=19%  Similarity=0.404  Sum_probs=31.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +..||+|+|+ |.+|+.++..|+..|+ ++|.++|.+.
T Consensus        20 ~~s~VlIiG~-gglG~evak~La~~GV-g~i~lvD~d~   55 (197)
T cd01492          20 RSARILLIGL-KGLGAEIAKNLVLSGI-GSLTILDDRT   55 (197)
T ss_pred             HhCcEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            4459999996 9999999999999996 6899999863

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.84  E-value=0.26  Score=45.56  Aligned_cols=35  Identities=29%  Similarity=0.377  Sum_probs=30.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~   63 (300)
                      +.+++.|+||+|.+|..++..|+..|.  .+++.|..
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~   45 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVA   45 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCC
Confidence            446899999999999999999999887  89999874

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.83  E-value=0.32  Score=37.64  Aligned_cols=63  Identities=14%  Similarity=0.181  Sum_probs=42.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +..+|.|||+ |.+|..-+..|...+-  ++.++..+.   ..  .++     .++...  ..++++++++|+|+.+.
T Consensus         6 ~~~~vlVvGg-G~va~~k~~~Ll~~gA--~v~vis~~~---~~--~~~-----~i~~~~--~~~~~~l~~~~lV~~at   68 (103)
T PF13241_consen    6 KGKRVLVVGG-GPVAARKARLLLEAGA--KVTVISPEI---EF--SEG-----LIQLIR--REFEEDLDGADLVFAAT   68 (103)
T ss_dssp             TT-EEEEEEE-SHHHHHHHHHHCCCTB--EEEEEESSE---HH--HHT-----SCEEEE--SS-GGGCTTESEEEE-S
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCch---hh--hhh-----HHHHHh--hhHHHHHhhheEEEecC
Confidence            3459999996 9999999999998884  899998743   11  111     222221  24457799999999874

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=94.81  E-value=0.053  Score=50.72  Aligned_cols=26  Identities=23%  Similarity=0.176  Sum_probs=23.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPL   53 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~   53 (300)
                      ++||+|+||+|.+|..+...|.+++.
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp~   27 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRSD   27 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCCC
Confidence            57999999999999999999988874

>PLN00203 glutamyl-tRNA reductase

Probab=94.80  E-value=0.11  Score=52.00  Aligned_cols=105  Identities=18%  Similarity=0.207  Sum_probs=62.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      ...+|+|||+ |.+|..++..|...|. .+|++++++..+..  .+........+.... .+++.+++.++|+||.+.+.
T Consensus       265 ~~kkVlVIGA-G~mG~~~a~~L~~~G~-~~V~V~nRs~era~--~La~~~~g~~i~~~~-~~dl~~al~~aDVVIsAT~s  339 (519)
T PLN00203        265 ASARVLVIGA-GKMGKLLVKHLVSKGC-TKMVVVNRSEERVA--ALREEFPDVEIIYKP-LDEMLACAAEADVVFTSTSS  339 (519)
T ss_pred             CCCEEEEEeC-HHHHHHHHHHHHhCCC-CeEEEEeCCHHHHH--HHHHHhCCCceEeec-HhhHHHHHhcCCEEEEccCC
Confidence            4569999996 9999999998888774 47999998654332  222111011122111 23556788999999887554


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhh----CCCeEEEEecCCCc
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISNPVN  149 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~----~p~a~viv~tNP~d  149 (300)
                      +. |-            +.++..+.+.+.    ...-++|=++.|=|
T Consensus       340 ~~-pv------------I~~e~l~~~~~~~~~~~~~~~~IDLAvPRd  373 (519)
T PLN00203        340 ET-PL------------FLKEHVEALPPASDTVGGKRLFVDISVPRN  373 (519)
T ss_pred             CC-Ce------------eCHHHHHHhhhcccccCCCeEEEEeCCCCC
Confidence            31 11            123333333221    12246777899987

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.79  E-value=0.44  Score=45.02  Aligned_cols=129  Identities=19%  Similarity=0.271  Sum_probs=72.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhccccCCCcEEEEecCCccccccCC-CCEEEEc
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALED-SDVVIIP  103 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~t~d~~~a~~~-aDiVIi~  103 (300)
                      .+..+|+|+|+ |-+|....+.....+.  +++.+|+++.+. .+.+|   ....-+.. . ..|.-+++++ +|+||.+
T Consensus       165 ~pG~~V~I~G~-GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~l---GAd~~i~~-~-~~~~~~~~~~~~d~ii~t  236 (339)
T COG1064         165 KPGKWVAVVGA-GGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKL---GADHVINS-S-DSDALEAVKEIADAIIDT  236 (339)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHh---CCcEEEEc-C-CchhhHHhHhhCcEEEEC
Confidence            34569999996 9888776666655664  999999976432 23333   11111221 1 1222233333 9999999


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCC-cccHHHHHHHHHHhCCCCCCcEEEe---eehhHH
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-NSTVPIAAEVFKKAGTYNEKKLFGV---TTLDVV  179 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-d~~~~i~~~~~~~~~~~~~~kviG~---t~Lds~  179 (300)
                      ++ +                  ..+-+.++-..+++.++.+.+|- .....+-  .+..  -+...+|.|+   +.-|..
T Consensus       237 v~-~------------------~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~--~~~l--i~~~~~i~GS~~g~~~d~~  293 (339)
T COG1064         237 VG-P------------------ATLEPSLKALRRGGTLVLVGLPGGGPIPLLP--AFLL--ILKEISIVGSLVGTRADLE  293 (339)
T ss_pred             CC-h------------------hhHHHHHHHHhcCCEEEEECCCCCcccCCCC--HHHh--hhcCeEEEEEecCCHHHHH
Confidence            76 3                  12223344445789999999994 3322110  1111  1346788898   455554


Q ss_pred             HHHHHH
Q 022263          180 RAKTFY  185 (300)
Q Consensus       180 R~~~~l  185 (300)
                      -+..+.
T Consensus       294 e~l~f~  299 (339)
T COG1064         294 EALDFA  299 (339)
T ss_pred             HHHHHH
Confidence            444444

>PRK06483 dihydromonapterin reductase; Provisional

Probab=94.78  E-value=0.23  Score=43.55  Aligned_cols=34  Identities=18%  Similarity=0.166  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|.++
T Consensus         3 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   36 (236)
T PRK06483          3 APILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTH   36 (236)
T ss_pred             ceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            4789999999999999999999887  899998865

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=94.78  E-value=0.32  Score=42.48  Aligned_cols=31  Identities=26%  Similarity=0.307  Sum_probs=27.3

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~   62 (300)
                      .+.|+||+|.+|..++..|+..+.  ++++...
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r   32 (242)
T TIGR01829         2 IALVTGGMGGIGTAICQRLAKDGY--RVAANCG   32 (242)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence            578999999999999999998887  7887766

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.77  E-value=0.51  Score=41.18  Aligned_cols=34  Identities=21%  Similarity=0.418  Sum_probs=30.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+|.|+||+|.+|+.++..|.+.|.  +|++.+.++
T Consensus         6 ~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~   39 (238)
T PRK05786          6 KKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE   39 (238)
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4899999999999999999999887  899998864

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=94.76  E-value=0.072  Score=50.05  Aligned_cols=74  Identities=14%  Similarity=0.192  Sum_probs=48.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ...+++|||+ |..|...+..|....-+.+|.+++++..+.+  +.++.+. ....+..   .+++++++++||+|+.+-
T Consensus       128 ~~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~-~g~~v~~---~~~~~~av~~aDiVvtaT  202 (326)
T TIGR02992       128 DSSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSL-LGIDVTA---ATDPRAAMSGADIIVTTT  202 (326)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhh-cCceEEE---eCCHHHHhccCCEEEEec
Confidence            3458999995 9999888887764223568999999764333  3334321 1112322   246778899999999874


Q ss_pred             C
Q 022263          105 G  105 (300)
Q Consensus       105 g  105 (300)
                      .
T Consensus       203 ~  203 (326)
T TIGR02992       203 P  203 (326)
T ss_pred             C
Confidence            3

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PLN02858 fructose-bisphosphate aldolase

Probab=94.75  E-value=0.089  Score=58.44  Aligned_cols=66  Identities=12%  Similarity=0.170  Sum_probs=48.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ..||++|| .|.||..++..|+..|+  ++..||+++.+..  ++.+..    ...   ..++.++.++||+||++..
T Consensus         4 ~~~IGfIG-LG~MG~~mA~~L~~~G~--~v~v~dr~~~~~~--~l~~~G----a~~---~~s~~e~a~~advVi~~l~   69 (1378)
T PLN02858          4 AGVVGFVG-LDSLSFELASSLLRSGF--KVQAFEISTPLME--KFCELG----GHR---CDSPAEAAKDAAALVVVLS   69 (1378)
T ss_pred             CCeEEEEc-hhHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHcC----Cee---cCCHHHHHhcCCEEEEEcC
Confidence            45899999 59999999999999998  8999998654332  333321    111   1345678899999999853

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=94.70  E-value=0.15  Score=49.49  Aligned_cols=125  Identities=18%  Similarity=0.267  Sum_probs=72.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-H-HHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-A-ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~-~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      ||.|+|. |..|.++|..|...|.  +|...|....... . ..+....  ..++.+.+ .+ .+.++++|+||.+.|.|
T Consensus         1 ~~~~iG~-G~~G~a~a~~l~~~G~--~V~~sD~~~~~~~~~~~~~~~~~--~gi~~~~g-~~-~~~~~~~d~vv~sp~i~   73 (433)
T TIGR01087         1 KILILGL-GKTGRAVARFLHKKGA--EVTVTDLKPNEELEPSMGQLRLN--EGSVLHTG-LH-LEDLNNADLVVKSPGIP   73 (433)
T ss_pred             CEEEEEe-CHhHHHHHHHHHHCCC--EEEEEeCCCCccchhHHHHHhhc--cCcEEEec-Cc-hHHhccCCEEEECCCCC
Confidence            5899995 9999999999999998  8999998543211 1 1111100  12333333 23 35678999999999887


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhC
Q 022263          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAG  163 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~  163 (300)
                      ... .........+++++.+. +.+.+..+ ..+-|--||==.+.+.+++++++..+
T Consensus        74 ~~~-p~~~~a~~~~i~i~~~~-e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g  128 (433)
T TIGR01087        74 PDH-PLVQAAAKRGIPVVGDI-ELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG  128 (433)
T ss_pred             CCC-HHHHHHHHCCCcEEEHH-HHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            421 12222234566665443 22223322 22322235544556667888887765

>PRK07201 short chain dehydrogenase; Provisional

Probab=94.70  E-value=0.29  Score=49.97  Aligned_cols=38  Identities=21%  Similarity=0.280  Sum_probs=32.7

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ....+++.|+||+|.+|.+++..|+..|.  +|++++.+.
T Consensus       368 ~~~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~  405 (657)
T PRK07201        368 PLVGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNG  405 (657)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            34456899999999999999999999887  899999864

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=94.66  E-value=0.084  Score=44.58  Aligned_cols=65  Identities=17%  Similarity=0.219  Sum_probs=41.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ..+|+|||. |.-|.+.|..|...++  +|+.-..........--.+.     .+    ..+..|+.+.||+|+++.
T Consensus         4 ~k~IAViGy-GsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~A~~~G-----f~----v~~~~eAv~~aDvV~~L~   68 (165)
T PF07991_consen    4 GKTIAVIGY-GSQGHAHALNLRDSGV--NVIVGLREGSASWEKAKADG-----FE----VMSVAEAVKKADVVMLLL   68 (165)
T ss_dssp             TSEEEEES--SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHHHHTT------E----CCEHHHHHHC-SEEEE-S
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCC--CEEEEecCCCcCHHHHHHCC-----Ce----eccHHHHHhhCCEEEEeC
Confidence            459999996 9999999999999998  77777664432221111221     11    124568999999999984

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.65  E-value=0.3  Score=48.08  Aligned_cols=127  Identities=19%  Similarity=0.153  Sum_probs=71.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc-cc-H-HHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PG-V-AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~-~g-~-~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      +..+|.|+|+ |.+|..+|..|...|.  ++.++|.... .. . ...|.+.    .+..+.++ +. +...++|+||++
T Consensus        15 ~~~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----gv~~~~~~-~~-~~~~~~D~Vv~s   85 (480)
T PRK01438         15 QGLRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEAL----GATVRLGP-GP-TLPEDTDLVVTS   85 (480)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHc----CCEEEECC-Cc-cccCCCCEEEEC
Confidence            3458999996 9999999999998887  8999997542 11 1 1123322    23333322 11 235679999999


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHH--HHHHHHhhCCCeEEEEe--cCCCcccHHHHHHHHHHhC
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKD--LCSAIAKYCPNAIVNMI--SNPVNSTVPIAAEVFKKAG  163 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~--i~~~i~~~~p~a~viv~--tNP~d~~~~i~~~~~~~~~  163 (300)
                      .|.+..... ....-..+++++.+  ++-.+.+...+..+|-+  ||==.+.+.+++.+++..+
T Consensus        86 ~Gi~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g  148 (480)
T PRK01438         86 PGWRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAG  148 (480)
T ss_pred             CCcCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence            887532211 11112345555543  22222221123334445  4544555677788887655

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=94.65  E-value=0.12  Score=44.91  Aligned_cols=74  Identities=24%  Similarity=0.350  Sum_probs=49.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc----ccHHHHhccccCCCcEEEEecCCccccccCCCCEEE
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~----~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      ....+|+|||-+.-||..++.+|.+.+-  .+.++|++.-    ++.  .+.|...+  .+..  +.++.+.++.|||||
T Consensus        60 l~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~--~~~hs~t~--~~~~--~~~l~~~~~~ADIVI  131 (197)
T cd01079          60 LYGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGE--SIRHEKHH--VTDE--EAMTLDCLSQSDVVI  131 (197)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCccccccccc--cccccccc--ccch--hhHHHHHhhhCCEEE
Confidence            3456999999988999999999998775  8999987431    111  12232110  0000  112557789999999


Q ss_pred             EcCCCC
Q 022263          102 IPAGVP  107 (300)
Q Consensus       102 i~ag~~  107 (300)
                      .++|.+
T Consensus       132 sAvG~~  137 (197)
T cd01079         132 TGVPSP  137 (197)
T ss_pred             EccCCC
Confidence            999866

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=94.58  E-value=0.077  Score=50.35  Aligned_cols=34  Identities=29%  Similarity=0.484  Sum_probs=28.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~   62 (300)
                      ++||+|+||+|++|+.++..|...+.. ||+++..
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p~~-el~~~~~   36 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHPWF-EVTALAA   36 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEEc
Confidence            479999999999999999988876644 7888844

>PRK06125 short chain dehydrogenase; Provisional

Probab=94.57  E-value=0.91  Score=40.37  Aligned_cols=115  Identities=16%  Similarity=0.128  Sum_probs=63.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCcc------ccccCCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQL------GQALEDSD   98 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d~------~~a~~~aD   98 (300)
                      .+++.|+||+|.+|..++..|+..|.  +|++.+++..+.  ...++.... ...+..+.. -+|.      .+.+...|
T Consensus         7 ~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id   83 (259)
T PRK06125          7 GKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID   83 (259)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence            35899999999999999999999887  899999864321  122232211 112222110 1121      11246799


Q ss_pred             EEEEcCCCCCC-CC--Ccc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           99 VVIIPAGVPRK-PG--MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        99 iVIi~ag~~~~-~g--~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ++|.++|.... +-  .+.   ...+..|+.    +.+.+.+.+.+.. .+.++++|.
T Consensus        84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~iss  140 (259)
T PRK06125         84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVIG  140 (259)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEecC
Confidence            99999986421 11  111   223344544    4445555555432 345555543

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.53  E-value=0.21  Score=48.84  Aligned_cols=126  Identities=17%  Similarity=0.189  Sum_probs=73.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~  108 (300)
                      --|+|+|. |..|.++|..|...|.  ++...|.........+|....  ..+..+.+..+. +.+.++|+||.+.|.|.
T Consensus         7 ~~~~v~G~-G~sG~s~a~~L~~~G~--~v~~~D~~~~~~~~~~l~~~~--~g~~~~~~~~~~-~~~~~~d~vV~sp~i~~   80 (448)
T PRK03803          7 GLHIVVGL-GKTGLSVVRFLARQGI--PFAVMDSREQPPGLDTLAREF--PDVELRCGGFDC-ELLVQASEIIISPGLAL   80 (448)
T ss_pred             CeEEEEee-cHhHHHHHHHHHhCCC--eEEEEeCCCCchhHHHHHhhc--CCcEEEeCCCCh-HHhcCCCEEEECCCCCC
Confidence            36999996 9999999999999997  899999854321112243210  123333332332 55789999999988864


Q ss_pred             CCCCcchhhhhhhHHHHHHH--HHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhC
Q 022263          109 KPGMTRDDLFNINAGIVKDL--CSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (300)
Q Consensus       109 ~~g~~r~dl~~~N~~i~~~i--~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~  163 (300)
                      ..- ........+++++.++  +..+.  ....+-|--||==.+.+.+++.+++..+
T Consensus        81 ~~p-~~~~a~~~~i~i~~~~el~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g  134 (448)
T PRK03803         81 DTP-ALRAAAAMGIEVIGDIELFAREA--KAPVIAITGSNGKSTVTTLVGEMAKAAG  134 (448)
T ss_pred             CCH-HHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence            211 1122224456665432  22222  1222333235654556678888887765

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=94.52  E-value=0.089  Score=49.38  Aligned_cols=68  Identities=18%  Similarity=0.216  Sum_probs=47.5

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      +..+..+|+|||- |.+|..+|..|...|+  +|+.+|... ..  .+.....   ..+.    .++.++++.||+|++.
T Consensus        12 ~~LkgKtVGIIG~-GsIG~amA~nL~d~G~--~ViV~~r~~-~s--~~~A~~~---G~~v----~sl~Eaak~ADVV~ll   78 (335)
T PRK13403         12 ELLQGKTVAVIGY-GSQGHAQAQNLRDSGV--EVVVGVRPG-KS--FEVAKAD---GFEV----MSVSEAVRTAQVVQML   78 (335)
T ss_pred             hhhCcCEEEEEeE-cHHHHHHHHHHHHCcC--EEEEEECcc-hh--hHHHHHc---CCEE----CCHHHHHhcCCEEEEe
Confidence            3445569999995 9999999999999998  898887532 11  1111111   1121    1467899999999998


Q ss_pred             C
Q 022263          104 A  104 (300)
Q Consensus       104 a  104 (300)
                      .
T Consensus        79 L   79 (335)
T PRK13403         79 L   79 (335)
T ss_pred             C
Confidence            5

>PRK07877 hypothetical protein; Provisional

Probab=94.48  E-value=0.13  Score=53.39  Aligned_cols=76  Identities=21%  Similarity=0.336  Sum_probs=50.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc-----ccH---------------HHHhccccCCCcEEEEec
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-----PGV---------------AADVGHINTRSEVAGYMG   86 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~-----~g~---------------~~dl~~~~~~~~v~~~~~   86 (300)
                      +..||+|+|+ | +|++++..|+..|++++|.|+|-+..     .-+               +..+...+....+..+..
T Consensus       106 ~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~  183 (722)
T PRK07877        106 GRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD  183 (722)
T ss_pred             hcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence            3458999996 9 99999999999998789999998531     001               111222222334444321


Q ss_pred             ---CCccccccCCCCEEEEcC
Q 022263           87 ---NDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        87 ---t~d~~~a~~~aDiVIi~a  104 (300)
                         .++.++.++++|+||-+.
T Consensus       184 ~i~~~n~~~~l~~~DlVvD~~  204 (722)
T PRK07877        184 GLTEDNVDAFLDGLDVVVEEC  204 (722)
T ss_pred             cCCHHHHHHHhcCCCEEEECC
Confidence               134555678999999873

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.43  E-value=0.42  Score=37.20  Aligned_cols=92  Identities=21%  Similarity=0.263  Sum_probs=55.3

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc---c-ccccCCCCEEEEcCC
Q 022263           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---L-GQALEDSDVVIIPAG  105 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~-~~a~~~aDiVIi~ag  105 (300)
                      |.|+|. |.+|..++..|...+.  +++++|.++....  .+....    +..+.|. ++   + +..+++||.||++.+
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~--~vvvid~d~~~~~--~~~~~~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~   71 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGI--DVVVIDRDPERVE--ELREEG----VEVIYGDATDPEVLERAGIEKADAVVILTD   71 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTS--EEEEEESSHHHHH--HHHHTT----SEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCC--EEEEEECCcHHHH--HHHhcc----cccccccchhhhHHhhcCccccCEEEEccC
Confidence            579996 9999999999998664  8999999764322  222221    1111111 11   1 234688998888743


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .         |  ..|    ..++..+++..|+..++...+
T Consensus        72 ~---------d--~~n----~~~~~~~r~~~~~~~ii~~~~   97 (116)
T PF02254_consen   72 D---------D--EEN----LLIALLARELNPDIRIIARVN   97 (116)
T ss_dssp             S---------H--HHH----HHHHHHHHHHTTTSEEEEEES
T ss_pred             C---------H--HHH----HHHHHHHHHHCCCCeEEEEEC
Confidence            1         1  334    445566677788766655543

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.42  E-value=0.11  Score=48.04  Aligned_cols=57  Identities=18%  Similarity=0.378  Sum_probs=44.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ....+|+|||.+|.||..++..|.+.+.  .+.++...                       |.++++.+++||+||.+.|
T Consensus       156 l~Gk~v~vIG~S~ivG~Pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVI~avg  210 (284)
T PRK14179        156 LEGKHAVVIGRSNIVGKPMAQLLLDKNA--TVTLTHSR-----------------------TRNLAEVARKADILVVAIG  210 (284)
T ss_pred             CCCCEEEEECCCCcCcHHHHHHHHHCCC--EEEEECCC-----------------------CCCHHHHHhhCCEEEEecC
Confidence            3456999999889999999999998886  77776210                       1245577899999999988


Q ss_pred             CC
Q 022263          106 VP  107 (300)
Q Consensus       106 ~~  107 (300)
                      .+
T Consensus       211 ~~  212 (284)
T PRK14179        211 RG  212 (284)
T ss_pred             cc
Confidence            65

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	300
1sev_A	362	Mature And Translocatable Forms Of Glyoxysomal Mala		5e-99
1smk_A	326	Mature And Translocatable Forms Of Glyoxysomal Mala		2e-98
1mld_A	314	Refined Structure Of Mitochondrial Malate Dehydroge		1e-87
2dfd_A	342	Crystal Structure Of Human Malate Dehydrogenase Typ		4e-87
2pwz_A	312	Crystal Structure Of The Apo Form Of E.Coli Malate		3e-70
1emd_A	312	Crystal Structure Of A Ternary Complex Of Escherich		5e-70
4e0b_A	313	2.17 Angstrom Resolution Crystal Structure Of Malat		2e-69
1ib6_A	312	Crystal Structure Of R153c E. Coli Malate Dehydroge		6e-69
3tl2_A	315	Crystal Structure Of Bacillus Anthracis Str. Ames M		4e-19
3p7m_A	321	Structure Of Putative Lactate Dehydrogenase From Fr		2e-18
1gv0_A	310	Structural Basis For Thermophilic Protein Stability		5e-18
2hjr_A	328	Crystal Structure Of Cryptosporidium Parvum Malate		7e-18
1guz_A	310	Structural Basis For Thermophilic Protein Stability		1e-17
1gv1_A	310	Structural Basis For Thermophilic Protein Stability		3e-17
3gvh_A	324	Crystal Structure Of LactateMALATE DEHYDROGENASE FR		1e-16
1ur5_A	309	Stabilization Of A Tetrameric Malate Dehydrogenase		5e-15
1uxh_A	309	Large Improvement In The Thermal Stability Of A Tet		5e-15
1guy_A	309	Structural Basis For Thermophilic Protein Stability		5e-15
1uxi_A	309	Large Improvement In The Thermal Stability Of A Tet		5e-15
1hyg_A	313	Crystal Structure Of Mj0490 Gene Product, The Famil		5e-15
1a5z_A	319	Lactate Dehydrogenase From Thermotoga Maritima (tml		6e-13
1y6j_A	318	L-Lactate Dehydrogenase From Clostridium Thermocell		1e-12
1sov_A	328	Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap		9e-12
3czm_A	326	T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex		1e-11
2x0i_A	294	2.9 A Resolution Structure Of Malate Dehydrogenase		1e-11
3nep_X	314	1.55a Resolution Structure Of Malate Dehydrogenase		2e-11
2ewd_A	317	Crystal Structure Of The Lactate Dehydrogenase From		3e-11
3fi9_A	343	Crystal Structure Of Malate Dehydrogenase From Porp		3e-11
2fm3_A	321	Crystal Structure Of The Lactate Dehydrogenase From		3e-11
2d4a_A	308	Structure Of The Malate Dehydrogenase From Aeropyru		6e-11
1lld_A	319	Molecular Basis Of Allosteric Activation Of Bacteri		3e-10
1pze_A	331	T.gondii Ldh1 Apo Form Length = 331		2e-09
3om9_A	329	T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex		2e-09
1pzg_A	331	T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.		3e-09
1o6z_A	303	1.95 A Resolution Structure Of (r207s,r292s) Mutant		4e-09
2x0r_A	304	R207s,R292s Mutant Of Malate Dehydrogenase From The		4e-09
1ceq_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		4e-09
1hlp_A	303	Structural Features Stabilizing Halophilic Malate D		4e-09
2hlp_A	303	Crystal Structure Of The E267r Mutant Of A Halophil		4e-09
2j5k_A	304	2.0 A Resolution Structure Of The Wild Type Malate		4e-09
1oc4_A	322	Lactate Dehydrogenase From Plasmodium Berghei Lengt		4e-09
1u4o_A	321	Plasmodium Falciparum Lactate Dehydrogenase Complex		6e-09
1t24_A	322	Plasmodium Falciparum Lactate Dehydrogenase Complex		6e-09
1xiv_A	323	Plasmodium Falciparum Lactate Dehydrogenase Complex		7e-09
1t2e_A	322	Plasmodium Falciparum Lactate Dehydrogenase S245a,		8e-09
2a92_A	321	Crystal Structure Of Lactate Dehydrogenase From Pla		2e-08
5ldh_A	334	Structure Of The Active Ternary Complex Of Pig Hear		5e-08
1cet_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		6e-08
1wze_A	327	Structural Basis For Alteration Of Cofactor Specifi		1e-07
1bmd_A	327	Determinants Of Protein Thermostability Observed In		2e-07
1iz9_A	327	Crystal Structure Of Malate Dehydrogenase From Ther		2e-07
1bdm_A	327	The Structure At 1.8 Angstroms Resolution Of A Sing		2e-07
2v65_A	331	Apo Ldh From The Psychrophile C. Gunnari Length = 3		2e-07
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		2e-07
2v6b_A	304	Crystal Structure Of Lactate Dehydrogenase From Dei		3e-07
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		4e-07
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		4e-07
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		4e-07
3vku_A	326	Penta Mutant Of Lactobacillus Casei Lactate Dehydro		6e-07
2zqy_A	326	T-State Structure Of Allosteric L-Lactate Dehydroge		7e-07
1t2f_A	333	Human B Lactate Dehydrogenase Complexed With Nad+ A		7e-07
1i0z_A	333	Human Heart L-Lactate Dehydrogenase H Chain, Ternar		8e-07
1v6a_A	332	Crystal Structure Of L-Lactate Dehydrogenase From C		9e-07
1llc_A	325	Structure Determination Of The Allosteric L-Lactate		1e-06
3d0o_A	317	Crystal Structure Of Lactate Dehydrogenase From Sta		2e-06
3h3j_A	317	Crystal Structure Of Lactate Dehydrogenase Mutant (		2e-06
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		3e-06
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		3e-06
4mdh_A	334	Refined Crystal Structure Of Cytoplasmic Malate Deh		5e-06
5mdh_A	333	Crystal Structure Of Ternary Complex Of Porcine Cyt		5e-06
6ldh_A	330	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		5e-06
1ldm_A	329	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		5e-06
1ldn_A	316	Structure Of A Ternary Complex Of An Allosteric Lac		1e-05
1ldb_A	317	Structure Determination And Refinement Of Bacillus		1e-05
1ez4_A	318	Crystal Structure Of Non-Allosteric L-Lactate Dehyd		2e-05
4h7p_A	345	Crystal Structure Of A Putative Cytosolic Malate De		2e-05
3pqd_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		3e-05
3pqe_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		4e-05
1civ_A	385	Chloroplast Nadp-Dependent Malate Dehydrogenase Fro		6e-05
3d5t_A	331	Crystal Structure Of Malate Dehydrogenase From Burk		7e-05
1b8p_A	329	Malate Dehydrogenase From Aquaspirillum Arcticum Le		2e-04
4a73_A	310	Single Point Mutant Of Thermus Thermophilus Lactate		3e-04
2e37_A	310	Structure Of Tt0471 Protein From Thermus Thermophil		3e-04
2v6m_A	310	Crystal Structure Of Lactate Dehydrogenase From The		3e-04
2xxb_A	310	Penta-Mutant Of Thermus Thermophilus Lactate Dehydr		4e-04
7mdh_A	375	Structural Basis For Light Acitvation Of A Chloropl		5e-04

>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362

Iteration: 1
 Score =  357 bits (916), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 187/300 (62%), Positives = 213/300 (71%), Gaps = 10/300 (3%)
Query: 2   RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61
            SS LR     AK  GA G+        KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD
Sbjct: 27  ESSALRRANCRAK-GGAPGF--------KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYD 77
Query: 62  IANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
           + N PGV AD+ H++T + V G++G  QL  AL   D++I+PAGVPRKPGMTRDDLF IN
Sbjct: 78  VVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKIN 137
Query: 122 AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
           AGIVK LC  IAK CP AIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA
Sbjct: 138 AGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRA 197
Query: 182 KTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
            TF                   HAG+TILPL SQ  P ++   E+I  LT R Q+GGTEV
Sbjct: 198 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEV 257
Query: 242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK-RAWKN 300
           VEAKAG GSATLSMAYA   FADACL+GL G   V+EC+FV S VTELPFFASK R  +N
Sbjct: 258 VEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRN 317

>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326

Iteration: 1
 Score =  355 bits (911), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 179/275 (65%), Positives = 204/275 (74%), Gaps = 1/275 (0%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG 86
           P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ N PGV AD+ H++T + V G++G
Sbjct: 7   PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLG 66
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
             QL  AL   D++I+PAGVPRKPGMTRDDLF INAGIVK LC  IAK CP AIVN+ISN
Sbjct: 67  QQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISN 126
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
           PVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA TF                   HAG
Sbjct: 127 PVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG 186
Query: 207 ITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC 266
           +TILPL SQ  P ++   E+I  LT R Q+GGTEVVEAKAG GSATLSMAYA   FADAC
Sbjct: 187 VTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 246
Query: 267 LKGLNGVPDVVECSFVQSTVTELPFFASK-RAWKN 300
           L+GL G   V+EC+FV S VTELPFFASK R  +N
Sbjct: 247 LRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRN 281

>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314

Iteration: 1
 Score =  319 bits (818), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 159/265 (60%), Positives = 194/265 (73%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP+A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI 209
           ST+PI AEVFKK G YN  K+FGVTTLD+VRA  F                   HAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKG 269
           +PL SQ TPK +   + +  LT R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241
Query: 270 LNGVPDVVECSFVQSTVTELPFFAS 294
           +NG   VVECSFV+S  T+ P+F++
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFST 266

>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342

Iteration: 1
 Score =  317 bits (813), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 159/267 (59%), Positives = 195/267 (73%)
Query: 28  DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN 87
           + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI T++ V GY+G 
Sbjct: 28  NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGP 87
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP A++ +I+NP
Sbjct: 88  EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANP 147
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           VNST+PI AEVFKK G YN  K+FGVTTLD+VRA TF                   HAG 
Sbjct: 148 VNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGK 207
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TI+PL SQ TPK +   + + ALT R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +
Sbjct: 208 TIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLV 267
Query: 268 KGLNGVPDVVECSFVQSTVTELPFFAS 294
             +NG   VVECSFV+S  TE  +F++
Sbjct: 268 DAMNGKEGVVECSFVKSQETECTYFST 294

>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  261 bits (667), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 143/267 (53%), Positives = 178/267 (66%), Gaps = 4/267 (1%)
Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  DAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           VN+TV IAAEV KKAG Y++ KLFGVTTLD++R+ TF                   H+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + +
Sbjct: 181 TILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239
Query: 268 KGLNGVPDVVECSFVQSTVTELPFFAS 294
           + L G   VVEC++V+       FF+ 
Sbjct: 240 RALQGEQGVVECAYVEGDGQYARFFSQ 266

>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312

Iteration: 1
 Score =  261 bits (666), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 143/267 (53%), Positives = 178/267 (66%), Gaps = 4/267 (1%)
Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  DAT-PALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           VN+TV IAAEV KKAG Y++ KLFGVTTLD++R+ TF                   H+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + +
Sbjct: 181 TILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239
Query: 268 KGLNGVPDVVECSFVQSTVTELPFFAS 294
           + L G   VVEC++V+       FF+ 
Sbjct: 240 RALQGEQGVVECAYVEGDGQYARFFSQ 266

>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313

Iteration: 1
 Score =  259 bits (661), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 149/267 (55%), Positives = 177/267 (66%), Gaps = 5/267 (1%)
Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G 
Sbjct: 5   KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGYAGE 64
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPG  R DLFN+NAGIVK L   IA  CPNA + +I+NP
Sbjct: 65  DPT-PALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNP 123
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           VN+TVPIAAEV KKAG Y+++KLFGVTTLDV+R++TF                   H+G+
Sbjct: 124 VNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGV 183
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TILPL SQ       +DE+I ALTKR Q+ GTEVVEAKAG GSATLS   A   F  A +
Sbjct: 184 TILPLLSQ-VEGVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSXGQAACRFGLALV 242
Query: 268 KGLNGVPDVVECSFVQSTVTELPFFAS 294
           K L G  +V+E ++V+       FFA 
Sbjct: 243 KALQG-EEVIEYAYVEGNGEHASFFAQ 268

>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  257 bits (656), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 142/267 (53%), Positives = 177/267 (66%), Gaps = 4/267 (1%)
Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  DAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           VN+TV IAAEV KKAG Y++ KLFGVTTLD++ + TF                   H+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + +
Sbjct: 181 TILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239
Query: 268 KGLNGVPDVVECSFVQSTVTELPFFAS 294
           + L G   VVEC++V+       FF+ 
Sbjct: 240 RALQGEQGVVECAYVEGDGQYARFFSQ 266

>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/258 (33%), Positives = 127/258 (49%), Gaps = 26/258 (10%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHINTRSE 80
           ++  +KV+V+GA G  G   A L+    L + + L DI      T G A D+      S 
Sbjct: 5   TIKRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLE---ASP 59
Query: 81  VAGYMGN-----DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
           V G+  N     D    A  DSDVV+I AG+ RKPGM+RDDL   N+ I+K +   IAK+
Sbjct: 60  VQGFDANIIGTSDYADTA--DSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH 117
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXX 195
            PNAI+ +++NPV++   +   VFK+AG   E+ +     LD  R +TF           
Sbjct: 118 SPNAIIVVLTNPVDA---MTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKD 174
Query: 196 XXXXXXXXHAGITILPL----FSQATPKANLA-DEDIKALTKRTQDGGTEVVEAKAGKGS 250
                   H G  ++PL    ++   P   L   E ++A+ +RT+ GG E+V    G GS
Sbjct: 175 ITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGS 232
Query: 251 ATLSMAYAGAIFADACLK 268
           A  + A +     +A LK
Sbjct: 233 AYYAPAASLVEMTEAILK 250

>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 112/253 (44%), Gaps = 20/253 (7%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG 86
           RK   L  AG IG  LA L  +  L   + L+DIA     G A D+        V   + 
Sbjct: 5   RKKITLVGAGNIGGTLAHLALIKQL-GDVVLFDIAQGXPNGKALDLLQTCPIEGVDFKVR 63
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
                + LE+SDVVI+ AGVPRKPG +RDDL  IN  + + +   I   CPNA V  I+N
Sbjct: 64  GTNDYKDLENSDVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVICITN 123
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYXXXXXXXXXXXXXXXXXXHA 205
           P++    I     +K     + K+ G    LD  R +TF                   H 
Sbjct: 124 PLD----IXVNXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXGGH- 178
Query: 206 GITILPL----------FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
           G T +PL            Q   +  L  E + A+  RT+ GG E+V A    GSA  + 
Sbjct: 179 GDTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIV-ALLKTGSAYYAP 237
Query: 256 AYAGAIFADACLK 268
           A AG   A++ LK
Sbjct: 238 AAAGIQXAESFLK 250

>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 88.2 bits (217), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 24/226 (10%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAAD------VGHINTRSEV 81
           K+ V+GA G +G   A  +    L   L L D+      G A D      VG  +T+  V
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTK--V 58
Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            G   ND    A  +SD+V+I AG+PRKPGMTR+DL ++NAGIV+++   I ++  N I+
Sbjct: 59  TG--SNDYADTA--NSDIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPII 114
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            ++SNP++    +A   ++K+G   E+ +     LD  R ++F                 
Sbjct: 115 VVVSNPLDIMTHVA---WQKSGLPKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACVL 171
Query: 202 XXHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVV 242
             H G  ++P+    T    P A+L + E I  L +RT+ GG E+V
Sbjct: 172 GGH-GDAMVPVVKYTTVAGIPVADLISAERIAELVERTRTGGAEIV 216

>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328

Iteration: 1
 Score = 87.8 bits (216), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 28/232 (12%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGH----INTRSEVA 82
           +K++++GA G IG  +ALL+    L   + ++DI      G A D+ H    I + +++ 
Sbjct: 15  KKISIIGA-GQIGSTIALLLGQKDL-GDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIF 72
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G    +   + L++SDVVII AGVPRKP MTR DL  +NA IV  +   + KYCPNA V 
Sbjct: 73  G----ENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVI 128
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            I+NP+++ V      FK+       K+ G++  LD  R +                   
Sbjct: 129 CITNPLDAMV----YYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVV 184
Query: 202 XXHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVE 243
             H G  ++PL S  T           +  +    I  + K+T  GG E+VE
Sbjct: 185 GGH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVE 235

>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 111/227 (48%), Gaps = 24/227 (10%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAAD------VGHINTRSEV 81
           K+ V+GA G +G   A  +    L   L L D+      G A D      VG  +T+  V
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTK--V 58
Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            G   ND    A  +SD+VII AG+PRKPGMTR+DL   NAGIVK++   I K+  N I+
Sbjct: 59  TG--SNDYADTA--NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPII 114
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            ++SNP++    +A   + ++G   E+ +     LD  R ++F                 
Sbjct: 115 IVVSNPLDIMTHVA---WVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVL 171
Query: 202 XXHAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVE 243
             H G  ++P+    T    P ++L   E I  L +RT++GG E+VE
Sbjct: 172 GGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE 217

>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 110/227 (48%), Gaps = 24/227 (10%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAAD------VGHINTRSEV 81
           K+ V+GA G +G   A  +    L   L L D+      G   D      VG  +T+  +
Sbjct: 2   KITVIGA-GNVGATTAFRIADKKLARELVLLDVVEGIPQGKGLDMYETGPVGLFDTK--I 58
Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            G   ND    A  DSD+VII AG+PRKPGMTR+DL   NAGIVK++   I K+  N I+
Sbjct: 59  TG--SNDYADTA--DSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPII 114
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            ++SNP++    +A   + ++G   E+ +     LD  R ++F                 
Sbjct: 115 IVVSNPLDIMTHVA---WVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVL 171
Query: 202 XXHAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVE 243
             H G  ++P+    T    P ++L   E I  L +RT++GG E+VE
Sbjct: 172 GGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE 217

>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 116/235 (49%), Gaps = 28/235 (11%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEVA 82
           S+   K+A++G+ G IG  LA L  L  L   + L+DIA  TP G   D+      S V 
Sbjct: 4   SMARNKIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAE---SSPVD 58
Query: 83  GY-----MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
           G+       ND    A+E +DVVI+ AGVPRKPGM+RDDL  IN  +++ + + I KY P
Sbjct: 59  GFDAKFTGANDY--AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAP 116
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXX 197
            A V  I+NP+++ V  A + F     +    + GV  LD  R + F             
Sbjct: 117 EAFVICITNPLDAMV-WALQKFSGLPAHKVVGMAGV--LDSARFRYFLSEEFNVSVEDVT 173
Query: 198 XXXXXXHAGITILPLFSQAT----PKANL------ADEDIKALTKRTQDGGTEVV 242
                 H G +++PL   +T    P  +L      + + +  + +RT+DGG E+V
Sbjct: 174 VFVLGGH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIV 227

>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 7/151 (4%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP+++   +A
Sbjct: 70  NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI-LPLFS 214
           AEV   +G   E+ +     LD  R +TF                   H    + LP FS
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFS 186
Query: 215 --QATPKAN-LADEDIKALTKRTQDGGTEVV 242
                P +  +A + +  + +RT+ GG E+V
Sbjct: 187 CISGIPVSEFIAPDRLAQIVERTRKGGGEIV 217

>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 7/151 (4%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP+++   +A
Sbjct: 70  NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI-LPLFS 214
           AEV   +G   E+ +     LD  R +TF                   H    + LP FS
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGHGDEMVPLPRFS 186
Query: 215 QAT--PKAN-LADEDIKALTKRTQDGGTEVV 242
             +  P +  +A + +  + +RT+ GG E+V
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIV 217

>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 7/151 (4%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP+++   +A
Sbjct: 70  NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI-LPLFS 214
           AEV   +G   E+ +     LD  R +TF                   H    + LP FS
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFS 186
Query: 215 QAT--PKAN-LADEDIKALTKRTQDGGTEVV 242
             +  P +  +A + +  + +RT+ GG E+V
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIV 217

>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 7/151 (4%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP+++   +A
Sbjct: 70  NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI-LPLFS 214
           AEV   +G   E+ +     LD  R +TF                   H    + LP FS
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFS 186
Query: 215 QAT--PKAN-LADEDIKALTKRTQDGGTEVV 242
             +  P +  +A + +  + +RT+ GG E+V
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIV 217

>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 87/161 (54%), Gaps = 12/161 (7%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLAL----YDIANTPGVAADV--GHINTRSEVAG 83
           KV ++GA+G +G   ALL+   P +  L L    + I    G+  D+      TRS+   
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
           Y+ +D+  + +++SDVVII +GVPRK GM+R DL   NA IV      IA+ C   I  +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT 183
           I+NPV+  +   A V  K   +   ++FG+ T LD +R K 
Sbjct: 121 ITNPVD-VMTYKALVDSK---FERNQVFGLGTHLDSLRFKV 157

>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 10/158 (6%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYMGN 87
           K+ ++G  G +G   A  + +      + L D+      G A D+ H    +  A     
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D     L+ SDVVI+ AGVP+KPG TR  L   NA ++K++   ++KY P++IV +++NP
Sbjct: 61  DY--ADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNP 118
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF 184
           V+    +    F K    + +K+FG  T LD  R +T 
Sbjct: 119 VD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTL 152

>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 116/269 (43%), Gaps = 27/269 (10%)
Query: 24  ESVPDR-KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH-INTRS 79
           E V  R KVA++GA G +G   A  M L    + L L D+      G A D+ H +    
Sbjct: 2   EMVKSRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMG 60
Query: 80  EVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA 139
           +++ Y G+      ++D DV+++ AG  RKPG TR DL   N  I K++   I KY  + 
Sbjct: 61  QMSLYAGD---YSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHG 117
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXX 199
           ++ ++SNPV+    I   + K +G    K +   T LD +R +                 
Sbjct: 118 VILVVSNPVD---IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGY 174
Query: 200 XXXXHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAKAG 247
               H G + LPL+S               PK N  +ED K + +  +  G  +++    
Sbjct: 175 IIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIK---N 230
Query: 248 KGSATLSMAYAGAIFADACLKGLNGVPDV 276
           KG+    +A +     +  LK  N +  V
Sbjct: 231 KGATYYGIAVSINTIVETLLKNQNTIRTV 259

>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328

Iteration: 1
 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 115/258 (44%), Gaps = 26/258 (10%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +K+A++G+ G IG  +  L  L  L + + L+D+      G A D     + ++    + 
Sbjct: 9   KKIAMIGS-GMIGGTMGYLCVLREL-ADVVLFDVVTGMPEGKALDDSQATSIADTNVSVT 66
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           +    + +  SDVVII AG+ + PG      +R+DL   NA I++++   + KYCP A V
Sbjct: 67  SANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFV 126
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXXXX 200
            +++NP++  V    + F +A    +  + G+   LD  R + F                
Sbjct: 127 IVVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATV 182
Query: 201 XXXHAGITILPL----------FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGS 250
              H G  +LPL            +   K  + +  +  + +RT+  G E+V    G+GS
Sbjct: 183 IGTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGS 240
Query: 251 ATLSMAYAGAIFADACLK 268
           A  + A +    A A LK
Sbjct: 241 AYYAPALSAITMAQAFLK 258

>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 115/258 (44%), Gaps = 26/258 (10%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +K+A++G+ G IG  +  L  L  L + + L+D+      G A D     + ++    + 
Sbjct: 9   KKIAMIGS-GMIGGTMGYLCVLREL-ADVVLFDVVTGMPEGKALDDSQATSIADTNVSVT 66
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           +    + +  SDVVII AG+ + PG      +R+DL   NA I++++   + KYCP A V
Sbjct: 67  SANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFV 126
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXXXX 200
            +++NP++  V    + F +A    +  + G+   LD  R + F                
Sbjct: 127 IVVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATV 182
Query: 201 XXXHAGITILPL----------FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGS 250
              H G  +LPL            +   K  + +  +  + +RT+  G E+V    G+GS
Sbjct: 183 IGTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGS 240
Query: 251 ATLSMAYAGAIFADACLK 268
           A  + A +    A A LK
Sbjct: 241 AYYAPALSAITMAQAFLK 258

>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 17/154 (11%)
Query: 37  AGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAGYMGNDQL 90
           AG +G   A    LN  V  +AL DIA     G A D+ H    I+   ++ G  G D  
Sbjct: 8   AGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG--GADY- 64
Query: 91  GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS 150
              L+ S+++++ AG+ RKPGMTR DL + NAGI+KD+   I +  P + + +++NP++ 
Sbjct: 65  -SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDV 123
Query: 151 TVPIAAEVFKKAGT-YNEKKLFGV-TTLDVVRAK 182
              I   ++K++G   NE  +FG+   LD  R K
Sbjct: 124 MTYI---MWKESGKPRNE--VFGMGNQLDSQRLK 152

>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 22/226 (9%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY--- 84
           KV V+GA G +G  +A  +    +   + + DI +    G A D   +   S + G+   
Sbjct: 2   KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALD---MRESSPIHGFDTR 57
Query: 85  -MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
             G +  G   EDSDV II AG+PR PGM+RDDL   N  IV  +     +  P++ + +
Sbjct: 58  VTGTNDYGPT-EDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYXXXXXXXXXXXXXXXXX 202
           ++NP++    +A E    A  +   ++ G+   LD  R ++F                  
Sbjct: 117 VANPLDVMTYVAYE----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMG 172
Query: 203 XHAGITILPLFSQAT----PKANLADE-DIKALTKRTQDGGTEVVE 243
            H G T++PL    T    P   L D+  I+ + +RT+  G E+V+
Sbjct: 173 GH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVD 217

>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 11/160 (6%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGH-INTRSEVAGYM 85
           RK+AV+G+ G IG  +A ++  + L + + L+DIA     G A D+ H +      +  +
Sbjct: 5   RKIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62
Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145
           G D     +  SDVVII A +P +P   R +L   NA I+  +   + KYCPNA V  I+
Sbjct: 63  GTDDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICIT 121
Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTF 184
           NP++    +    F+K       K+ G+   LD  R +TF
Sbjct: 122 NPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTF 157

>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 26  VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD--IANTPGVAADVGHINTRSEVAG 83
           + + K+ ++GAAG IG  +A    +  L   L LYD       GVA ++ H        G
Sbjct: 6   LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRH-------CG 58
Query: 84  YMG-----NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
           + G        + +AL D+  ++   G PRK GMTR+DL   NA I   L   I  YCP+
Sbjct: 59  FEGLNLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPD 118
Query: 139 A-IVNMISNPVNST 151
              V +I NP + T
Sbjct: 119 CKHVIIIFNPADIT 132

>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 17/163 (10%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGH----INTRSEVA 82
           RK+AV+G+ G IG  +A ++  + L + + L+DIA     G A D+ H      + S+V 
Sbjct: 5   RKIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   ND     +  SDVVII A +P +P   R +L   NA I+  +   + KYCPNA V 
Sbjct: 63  GT--NDY--ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVI 118
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTF 184
            I+NP++    +    F+K       K+ G+   LD  R +TF
Sbjct: 119 CITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTF 157

>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 31  VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG----VAADVGHINTRSEVAGYMG 86
           + +LGA G +G   A+++ +      L    IA TPG     A D+ H      V   + 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLLL---IARTPGKPQGEALDLAHAAAELGVDIRIS 57
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
                + +  SD+V++ AG+ RKPGMTR+ L   NA  + DL   I  Y  +AIV + +N
Sbjct: 58  GSNSYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN 117
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTF 184
           PV++   +   ++KK G   E+ +     LD  R   +
Sbjct: 118 PVDAMTYV---MYKKTGFPRERVIGFSGILDSARMAYY 152

>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 113/265 (42%), Gaps = 26/265 (9%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA--DVGHINTRSEVA 82
           +V   K+AV+GA G +G  LA       +   + L DIA     A   D+ H ++     
Sbjct: 4   TVKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTV 62
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
              G+D   +   D+D+V+I AG  +KPG +R +L      I+K +   + K  PNAI  
Sbjct: 63  SIDGSDD-PEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYM 121
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
           +I+NPV+    IA  V +K     E ++FG  T LD  R +                   
Sbjct: 122 LITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIA 177
Query: 202 XXHAGITILPLFSQAT------------PKANLADEDIK-ALTKRTQDGGTEVVEAKAGK 248
             H G + +PL+  AT            P  +  D D +  + +  ++   +++    GK
Sbjct: 178 GEH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIIN---GK 233
Query: 249 GSATLSMAYAGAIFADACLKGLNGV 273
           G+   ++  +G    +A L   N +
Sbjct: 234 GATNYAIGMSGVDIIEAVLHDTNRI 258

>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV-AGYM 85
           +KVA++G+ G IG  +  L  L  L + + LYD+      G A D+ H+ +  +      
Sbjct: 10  KKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 67
Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
                  AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 68  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 127
Query: 141 VNMISNPVNSTVPIAAE 157
           + +++NP++  V +  E
Sbjct: 128 IIVVTNPLDCMVKVMCE 144

>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV-AGYM 85
           +KVA++G+ G IG  +  L  L  L + + LYD+      G A D+ H+ +  +      
Sbjct: 8   KKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 65
Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
                  AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 66  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 125
Query: 141 VNMISNPVNSTVPIAAE 157
           + +++NP++  V +  E
Sbjct: 126 IIVVTNPLDCMVKVMCE 142

>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV-AGYM 85
           +KVA++G+ G IG  +  L  L  L + + LYD+      G A D+ H+ +  +      
Sbjct: 10  KKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 67
Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
                  AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 68  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 127
Query: 141 VNMISNPVNSTVPIAAE 157
           + +++NP++  V +  E
Sbjct: 128 IIVVTNPLDCMVKVMXE 144

>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 92
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
             NA I++D+ S++ ++  + I    SNPV+
Sbjct: 93  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 123

>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 93
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
             NA I++D+ S++ ++  + I    SNPV+
Sbjct: 94  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 124

>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 113/265 (42%), Gaps = 28/265 (10%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGY 84
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N  +     
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNA 139
           +        L  SDVVI+ AG  + PG +     RDDL  +N  I+ ++   I K CPNA
Sbjct: 61  VSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 120
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXX 198
            + +++NPV+  V    ++  +     + K+ G+   LD  R K +              
Sbjct: 121 FIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNA 176
Query: 199 XXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
                H    +L          PL      K  ++D +++A+  RT +   E+V   A  
Sbjct: 177 HIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA-- 233
Query: 249 GSATLSMAYAGAIFADACLKGLNGV 273
            S  ++ A A    A++ LK L  V
Sbjct: 234 -SPYVAPAAAIIEMAESYLKDLKKV 257

>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 92
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
             NA I++D+ S++ ++  + I    SNPV+
Sbjct: 93  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 123

>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 92
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
             NA I++D+ S++ ++  + I    SNPV+
Sbjct: 93  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 123

>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 93
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
             NA I++D+ S++ ++  + I    SNPV+
Sbjct: 94  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 124

>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 25/238 (10%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGY 84
           P  K+ ++G+ G IG  +A L+    L   + ++DI  N P G A D  H N  +     
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVMFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNA 139
           +        L+D+DVVI+ AG  + PG +     RDDL  +N  I+ ++   I   CPNA
Sbjct: 61  VSGSNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPNA 120
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXX 198
            + +++NPV+  V    ++  +     + K+ G+   LD  R K +              
Sbjct: 121 FIIVVTNPVDVMV----QLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVNA 176
Query: 199 XXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKA 246
                H    +L          PL  +      + D+++ A+  RT +   E+V   A
Sbjct: 177 HIVGAHGNKMVLLKRYITVGGIPL-QEFINNKKITDQELDAIFDRTINTALEIVNLHA 233

>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 117/269 (43%), Gaps = 36/269 (13%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N    +  +
Sbjct: 2   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKY 135
           V+G    D L  A    DVVI+ AG  + PG +     RDDL  +N  I+ ++   I K 
Sbjct: 60  VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 115
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXX 194
           CPNA + +++NPV+  V    ++  +     + K+ G+   LD  R K +          
Sbjct: 116 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 171
Query: 195 XXXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
                    H    +L          PL      K  ++D +++A+  RT +   E+V  
Sbjct: 172 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 230
Query: 245 KAGKGSATLSMAYAGAIFADACLKGLNGV 273
            A   S  ++ A A    A++ LK L  V
Sbjct: 231 HA---SPYVAPAAAIIEMAESYLKDLKKV 256

>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 117/269 (43%), Gaps = 36/269 (13%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N    +  +
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKY 135
           V+G    D L  A    DVVI+ AG  + PG +     RDDL  +N  I+ ++   I K 
Sbjct: 61  VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 116
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXX 194
           CPNA + +++NPV+  V    ++  +     + K+ G+   LD  R K +          
Sbjct: 117 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 172
Query: 195 XXXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
                    H    +L          PL      K  ++D +++A+  RT +   E+V  
Sbjct: 173 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 231
Query: 245 KAGKGSATLSMAYAGAIFADACLKGLNGV 273
            A   S  ++ A A    A++ LK L  V
Sbjct: 232 HA---SPYVAPAAAIIEMAESYLKDLKKV 257

>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 117/269 (43%), Gaps = 36/269 (13%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N    +  +
Sbjct: 2   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKY 135
           V+G    D L  A    DVVI+ AG  + PG +     RDDL  +N  I+ ++   I K 
Sbjct: 60  VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 115
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXX 194
           CPNA + +++NPV+  V    ++  +     + K+ G+   LD  R K +          
Sbjct: 116 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 171
Query: 195 XXXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
                    H    +L          PL      K  ++D +++A+  RT +   E+V  
Sbjct: 172 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 230
Query: 245 KAGKGSATLSMAYAGAIFADACLKGLNGV 273
            A   S  ++ A A    A++ LK L  V
Sbjct: 231 HA---SPYVAPAAAIIEMAESYLKDLKKV 256

>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 22/170 (12%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N    +  +
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKY 135
           V+G    D L  A    DVVI+ AG  + PG +     RDDL  +N  I+ ++   I K 
Sbjct: 61  VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 116
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF 184
           CPNA + +++NPV+    +  ++  +     + K+ G+   LD  R K +
Sbjct: 117 CPNAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYY 162

>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 31/237 (13%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
           P  K+ ++G+ G IG  +A L+    L   + ++D+  N P G A D  H N    +  +
Sbjct: 2   PKPKIVLVGS-GMIGGVMATLIVQKNL-GDVVMFDVVKNMPQGKALDTSHSNVMAYSNCK 59
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKY 135
           V G    D L  A    DVVI+ AG  + PG +     RDDL  +N  I+ ++   I   
Sbjct: 60  VTGSNSYDDLKGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNL 115
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXX 195
           CPNA + +++NPV+  V +   +F+ +G    K +     LD  R K +           
Sbjct: 116 CPNAFIIVVTNPVDVMVQL---LFEHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRD 172
Query: 196 XXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVV 242
                   H    +L          PL  +      + DE+++ +  RT +   E+V
Sbjct: 173 VNALIVGAHGNKMVLLKRYITVGGIPL-QEFINNKKITDEEVEGIFDRTVNTALEIV 228

>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82
           ++PD K+ V+G  G +G   A+ +    L   LAL D+      G   D+ H +   +  
Sbjct: 18  TIPDNKITVVGV-GQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTP 76
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
             + N        +S +V++ AGV ++ G +R +L   N  + K +   I KY PN I+ 
Sbjct: 77  KIVANKDYS-VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIII 135
Query: 143 MISNPVNSTVPIAAEV 158
           ++SNPV+    +A ++
Sbjct: 136 VVSNPVDILTYVAWKL 151

>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase. Length = 316

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 112/265 (42%), Gaps = 28/265 (10%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGY 84
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N  +     
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNA 139
           +        L  SDVVI+ AG  + PG +     R DL  +N  I+ ++   I K CPNA
Sbjct: 61  VSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPNA 120
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXX 198
            + +++NPV+  V    ++  +     + K+ G+   LD  R K +              
Sbjct: 121 FIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNA 176
Query: 199 XXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
                H    +L          PL      K  ++D +++A+  RT +   E+V   A  
Sbjct: 177 HIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA-- 233
Query: 249 GSATLSMAYAGAIFADACLKGLNGV 273
            S  ++ A A    A++ LK L  V
Sbjct: 234 -SPYVAPAAAIIEMAESYLKDLKKV 257

>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG IG  L        +L K  P++ +L    + +     A  G +    +  
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL----LGSERSFQALEGVVMELEDCA 61
Query: 81  ---VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
              +AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+   
Sbjct: 62  FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
             + V ++ NP N+   IA   +K A   N +    +T LD  RAK
Sbjct: 122 KDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAK 164

>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANT----PGVAADVGHINTR 78
           +VAV GAAG IG  L        +L K  P++  L L +I        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             +AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+    
Sbjct: 63  PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 139 AI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
            + V ++ NP N+   IA   +K A   N +    +T LD  RAK
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAK 164

>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANT----PGVAADVGHINTR 78
           +VAV GAAG IG  L        +L K  P++  L L +I        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             +AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+    
Sbjct: 63  PLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 139 AI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
            + V ++ NP N+   IA   +K A   N +    +T LD  RAK
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAK 164

>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANT----PGVAADVGHINTR 78
           +VAV GAAG IG  L        +L K  P++  L L +I        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             +AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+    
Sbjct: 63  PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 139 AI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
            + V ++ NP N+   IA   +K A   N +    +T LD  RAK
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAK 164

>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 108/261 (41%), Gaps = 38/261 (14%)
Query: 45  ALLMKLNPLVSRLALYDIAN--TPGVAADVGH--INTRSEVAGYMGNDQLGQALEDSDVV 100
           A+ + L  L   LA+ D+      G   D+ H  +  ++++ G    D+      +S VV
Sbjct: 36  AISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFLKTKIVG----DKDYSVTANSKVV 91
Query: 101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK 160
           ++ AG  ++ G +R +L   N  I K +   I KY PN I+ ++SNPV+    +A   +K
Sbjct: 92  VVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVA---WK 148
Query: 161 KAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXH-------------AGI 207
            +G    + +   T LD  R +                     H             AG+
Sbjct: 149 LSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHPSSCHAWIVGEHGDSSVPVWSGVNVAGV 208
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFA---- 263
           ++  L  Q   + +   E+ KA+ K   DG  EV++ K G  S  + M+ A  + +    
Sbjct: 209 SLQGLNPQMGTEGD--GENWKAIHKEVVDGAYEVIKLK-GYTSWAIGMSVADLVESIIKN 265
Query: 264 -------DACLKGLNGVPDVV 277
                     ++G++GV D V
Sbjct: 266 MHKVHPVSTLVQGMHGVKDEV 286

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 109/270 (40%), Gaps = 33/270 (12%)
Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----IN 76
            E VP  K+ V+G  G +G   A+ + +  L   +AL D+      G   D+ H    + 
Sbjct: 15  EEHVPHNKITVVGV-GAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLR 73
Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           T   V+G   N        +S +V+I AG  ++ G +R +L   N  I K +   I KY 
Sbjct: 74  TPKIVSGKDYN-----VTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYS 128
Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXX 196
           PN  + ++SNPV+    +A   +K +G    + +     LD  R +              
Sbjct: 129 PNCKLLVVSNPVDILTYVA---WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSC 185
Query: 197 XXXXXXXH-------------AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVE 243
                  H             AG+++  L  +    A+   E  KA+ K   D   EV++
Sbjct: 186 HGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDAD--KEHWKAVHKEVVDSAYEVIK 243
Query: 244 AKAGKGSATLSMAYAGAIFADACLKGLNGV 273
               KG  + ++  + A  A++ +K L  V
Sbjct: 244 L---KGYTSWAIGLSVADLAESIMKNLRRV 270

>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           L D+ VVI+ AG  +KPG +R DL   NA I ++L   I +  P+A++ + SNPV+    
Sbjct: 65  LADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTD 124
Query: 154 IAAEV 158
           +A ++
Sbjct: 125 LATQL 129

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 110/270 (40%), Gaps = 33/270 (12%)
Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----IN 76
            E VP  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H    + 
Sbjct: 14  EEHVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLR 72
Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           T   V+G    D    A  +S +VII AG  ++ G +R +L   N  I K +   + KY 
Sbjct: 73  TPKIVSG---KDYSVTA--NSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS 127
Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXX 196
           P+  + ++SNPV+    +A   +K +G    + +     LD  R +              
Sbjct: 128 PHCKLLVVSNPVDILTYVA---WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSC 184
Query: 197 XXXXXXXH-------------AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVE 243
                  H             AG+++  L  +    A+   E  K + K+  D   EV++
Sbjct: 185 HGWILGEHGDSSVPVWSGMNVAGVSLKTLHPELGTDAD--KEQWKQVHKQVVDSAYEVIK 242
Query: 244 AKAGKGSATLSMAYAGAIFADACLKGLNGV 273
               KG  T ++  + A  A++ +K L  V
Sbjct: 243 L---KGYTTWAIGLSVADLAESIMKNLRRV 269

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----IN 76
            E  P  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H    + 
Sbjct: 14  EEQTPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLR 72
Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           T   V+G   N        +S +VII AG  ++ G +R +L   N  I K +   + KY 
Sbjct: 73  TPKIVSGKDYN-----VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS 127
Query: 137 PNAIVNMISNPVNSTVPIAAEV 158
           PN  + ++SNPV+    +A ++
Sbjct: 128 PNCKLLIVSNPVDILTYVAWKI 149

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----IN 76
            E  P  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H    + 
Sbjct: 14  EEQTPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLR 72
Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           T   V+G   N        +S +VII AG  ++ G +R +L   N  I K +   + KY 
Sbjct: 73  TPKIVSGKDYN-----VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS 127
Query: 137 PNAIVNMISNPVNSTVPIAAEV 158
           PN  + ++SNPV+    +A ++
Sbjct: 128 PNCKLLIVSNPVDILTYVAWKI 149

>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 102/259 (39%), Gaps = 22/259 (8%)
Query: 28  DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGH---INTRSEVA 82
           D +  +L   G +G   A  M L  +   + + DI    T G A D+       +  ++ 
Sbjct: 8   DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIY 67
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
               +D      +D+D+V+I AG P+KPG TR DL N N  I+K +   I     N I  
Sbjct: 68  SAEYSDA-----KDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFL 122
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXX 202
           + +NPV+    +    +K +G    + +   T+LD  R +                    
Sbjct: 123 VAANPVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMG 179
Query: 203 XHAGITILPLFSQATPKANLADEDIKA--------LTKRTQDGGTEVVEAKAGKGSATLS 254
            H G T  P++S A        E +KA        L K  +D   +  E    KG+    
Sbjct: 180 EH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLKGATFYG 238
Query: 255 MAYAGAIFADACLKGLNGV 273
           +A A A  + A L   N V
Sbjct: 239 IATALARISKAILNDENAV 257

>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 102/259 (39%), Gaps = 22/259 (8%)
Query: 28  DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGH---INTRSEVA 82
           D +  +L   G +G   A  M L  +   + + DI    T G A D+ +     +  ++ 
Sbjct: 8   DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIY 67
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
               +D      +D+D+V+I AG P+KPG TR DL N N  I+K +   I     N I  
Sbjct: 68  SAEYSDA-----KDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFL 122
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXX 202
           + +NPV+    +    +K +G    + +   T+LD  R +                    
Sbjct: 123 VAANPVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 179
Query: 203 XHAGITILPLFSQATPKANLADEDIKA--------LTKRTQDGGTEVVEAKAGKGSATLS 254
            H G T  P++S A        E +KA        L K  +D      E    KG+    
Sbjct: 180 EH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYG 238
Query: 255 MAYAGAIFADACLKGLNGV 273
           +A A A  + A L   N V
Sbjct: 239 IATALARISKAILNDENAV 257

>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTR 78
           +VP+ K+ V+G  G +G   A+ +    L   LAL D+      G   D+ H    + T 
Sbjct: 17  TVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTP 75
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             VA     D+      +S +V++ AGV ++ G +R +L   N  + K +   I KY P+
Sbjct: 76  KIVA-----DKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPD 130
Query: 139 AIVNMISNPVN 149
            I+ ++SNPV+
Sbjct: 131 CIIIVVSNPVD 141

>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTR 78
           +VP+ K+ V+G  G +G   A+ +    L   LAL D+      G   D+ H    + T 
Sbjct: 17  TVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTP 75
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             VA     D+      +S +V++ AGV ++ G +R +L   N  + K +   I KY P+
Sbjct: 76  KIVA-----DKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPD 130
Query: 139 AIVNMISNPVN 149
            I+ ++SNPV+
Sbjct: 131 CIIIVVSNPVD 141

>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 95/238 (39%), Gaps = 28/238 (11%)
Query: 50  LNPLVSRLALYDIANTP--GVAADVGH----INTRSEVAGYMGNDQLGQALEDSDVVIIP 103
           L  L   LAL D+      G A D+ H    + T   VA     D+      +S VV++ 
Sbjct: 41  LKDLTDELALVDVMEDKLKGEAMDLQHGSLFLKTHKIVA-----DKDYSVTANSKVVVVT 95
Query: 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG 163
           AG  ++ G +R +L   N  I K +   I KY PN I+ ++SNPV+    +A   +K +G
Sbjct: 96  AGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVDILTYVA---WKLSG 152
Query: 164 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXH--------AGITILPLFSQ 215
               + +   T LD  R +                     H        +G+ +  +F Q
Sbjct: 153 LPRNRVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIGEHGDSSVPVWSGVNVAGVFLQ 212
Query: 216 ATPKANLAD---EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGL 270
                   D   ED K++ K   D   EV++    KG  + ++  + A    + LK L
Sbjct: 213 GLNPDMGTDKDKEDWKSVHKMVVDSAYEVIKL---KGYTSWAIGMSAADLCQSILKNL 267

>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 102/259 (39%), Gaps = 22/259 (8%)
Query: 28  DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGH---INTRSEVA 82
           D +  +L   G +G   A  M L  +   + + DI    T G A D+ +     +  ++ 
Sbjct: 7   DHQKVILVGDGAVGSSYAFAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIY 66
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
               +D      +D+D+V+I AG P++PG TR DL N N  I+K +   I     N I  
Sbjct: 67  SAEYSDA-----KDADLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFL 121
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXX 202
           + +NPV+    +    +K +G    + +   T+LD  R +                    
Sbjct: 122 VAANPVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 178
Query: 203 XHAGITILPLFSQATPKANLADEDIKA--------LTKRTQDGGTEVVEAKAGKGSATLS 254
            H G T  P++S A        E +KA        L K  +D      E    KG+    
Sbjct: 179 EH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYG 237
Query: 255 MAYAGAIFADACLKGLNGV 273
           +A A A  + A L   N V
Sbjct: 238 IATALARISKAILNDENAV 256

>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Staphylococcus Aureus Length = 317

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 12/214 (5%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KV ++G  G +G   A  +    +V  L + D+ +T  V  DV  +   +  +      +
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVRVK 65
Query: 90  LGQA--LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
            G+     D+D+V+I AG  +KPG TR DL + N  I K +   +     + I  + +NP
Sbjct: 66  AGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNP 125
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           V+    +A   +K +G   E+ +   T LD  R +                     H G 
Sbjct: 126 VDI---LAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GD 181
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
           T LP++S     AN+A + +K L ++  +G  ++
Sbjct: 182 TELPVWSH----ANIAGQPLKTLLEQRPEGKAQI 211

>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r) Fro Staphylococcus Aureus Complexed With Nad And Pyruvate Length = 317

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 12/214 (5%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KV ++G  G +G   A  +    +V  L + D+ +T  V  DV  +   +  +      +
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVRVK 65
Query: 90  LGQA--LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
            G+     D+D+V+I AG  +KPG TR DL + N  I K +   +     + I  + +NP
Sbjct: 66  AGEYSDCHDADLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNP 125
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           V+    +A   +K +G   E+ +   T LD  R +                     H G 
Sbjct: 126 VDI---LAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GD 181
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
           T LP++S     AN+A + +K L ++  +G  ++
Sbjct: 182 TELPVWSH----ANIAGQPLKTLLEQRPEGKAQI 211

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 106/266 (39%), Gaps = 25/266 (9%)
Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSE 80
            E VP  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H +   +
Sbjct: 14  EEQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLK 72
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
               + +        +S +VII AG  ++ G +R +L   N  I K +   + KY P   
Sbjct: 73  TPKIVSSKDYS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK 131
Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXX 200
           + ++SNPV+    +A   +K +G    + +     LD  R +                  
Sbjct: 132 LLIVSNPVDILTYVA---WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWV 188
Query: 201 XXXH-------------AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAG 247
              H             AG+++  L  Q    A+   E  K + K+  D   EV++    
Sbjct: 189 LGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDAD--KEQWKDVHKQVVDSAYEVIKL--- 243
Query: 248 KGSATLSMAYAGAIFADACLKGLNGV 273
           KG  + ++  + A  A++ +K L  V
Sbjct: 244 KGYTSWAIGLSVADLAESIMKNLRRV 269

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 106/266 (39%), Gaps = 25/266 (9%)
Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSE 80
            E VP  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H +   +
Sbjct: 15  EEQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLK 73
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
               + +        +S +VII AG  ++ G +R +L   N  I K +   + KY P   
Sbjct: 74  TPKIVSSKDYS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK 132
Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXX 200
           + ++SNPV+    +A   +K +G    + +     LD  R +                  
Sbjct: 133 LLIVSNPVDILTYVA---WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWV 189
Query: 201 XXXH-------------AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAG 247
              H             AG+++  L  Q    A+   E  K + K+  D   EV++    
Sbjct: 190 LGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDAD--KEQWKDVHKQVVDSAYEVIKL--- 244
Query: 248 KGSATLSMAYAGAIFADACLKGLNGV 273
           KG  + ++  + A  A++ +K L  V
Sbjct: 245 KGYTSWAIGLSVADLAESIMKNLRRV 270

>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase At 2.5-Angstroms Resolution Length = 334

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA 82
           +V V GAAG I   L       ++  K  P++  L L DI  TP +    G +    + A
Sbjct: 6   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDI--TPMMGVLDGVLMELQDCA 61
Query: 83  -----GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
                  +  D+   A +D DV I+   +PR+ GM R DL   N  I K   +A+ KY  
Sbjct: 62  LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 121
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
            ++ V ++ NP N+    A+   K A +  ++    +T LD  RAK
Sbjct: 122 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAK 164

>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And Tnad At 2.4 Angstroms Resolution Length = 333

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA 82
           +V V GAAG I   L       ++  K  P++  L L DI  TP +    G +    + A
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDI--TPMMGVLDGVLMELQDCA 60
Query: 83  -----GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
                  +  D+   A +D DV I+   +PR+ GM R DL   N  I K   +A+ KY  
Sbjct: 61  LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 120
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
            ++ V ++ NP N+    A+   K A +  ++    +T LD  RAK
Sbjct: 121 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAK 163

>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 107/271 (39%), Gaps = 26/271 (9%)
Query: 14  KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAAD 71
           K  G    S E     K+ V+G  G +G   A+ + +  L   +AL D+      G   D
Sbjct: 7   KLIGHLATSQEPRSYNKITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMD 65
Query: 72  VGH----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKD 127
           + H    ++T   V+G   +   G     S +V+I AG  ++ G +R +L   N  I K 
Sbjct: 66  LQHGSLFLHTAKIVSGKDYSVSAG-----SKLVVITAGARQQEGESRLNLVQRNVNIFKF 120
Query: 128 LCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXX 187
           +   I K+ P+ I+ ++SNPV+    +A   +K +G    + +     LD  R +     
Sbjct: 121 IIPNIVKHSPDCIILVVSNPVDVLTYVA---WKLSGLPMHRIIGSGCNLDSARFRYLMGE 177
Query: 188 XXXXXXXXXXXXXXXXH--------AGITILPLFSQATPKANLADEDIKALTKRTQDGGT 239
                           H        +G+ +  +        N   +D K L K   D   
Sbjct: 178 RLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAY 237
Query: 240 EVVEAKAGKGSATLSMAYAGAIFADACLKGL 270
           EV++    KG  + ++  + A  A+  +K L
Sbjct: 238 EVIKL---KGYTSWAIGLSVADLAETIMKNL 265

>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 107/271 (39%), Gaps = 26/271 (9%)
Query: 14  KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAAD 71
           K  G    S E     K+ V+G  G +G   A+ + +  L   +AL D+      G   D
Sbjct: 6   KLIGHLATSQEPRSYNKITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMD 64
Query: 72  VGH----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKD 127
           + H    ++T   V+G   +   G     S +V+I AG  ++ G +R +L   N  I K 
Sbjct: 65  LQHGSLFLHTAKIVSGKDYSVSAG-----SKLVVITAGARQQEGESRLNLVQRNVNIFKF 119
Query: 128 LCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXX 187
           +   I K+ P+ I+ ++SNPV+    +A   +K +G    + +     LD  R +     
Sbjct: 120 IIPNIVKHSPDCIILVVSNPVDVLTYVA---WKLSGLPMHRIIGSGCNLDSARFRYLMGE 176
Query: 188 XXXXXXXXXXXXXXXXH--------AGITILPLFSQATPKANLADEDIKALTKRTQDGGT 239
                           H        +G+ +  +        N   +D K L K   D   
Sbjct: 177 RLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAY 236
Query: 240 EVVEAKAGKGSATLSMAYAGAIFADACLKGL 270
           EV++    KG  + ++  + A  A+  +K L
Sbjct: 237 EVIKL---KGYTSWAIGLSVADLAETIMKNL 264

>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 15/161 (9%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           D+D+V+I AG  +KPG TR DL + N  I + +  ++       +  + +NPV+    + 
Sbjct: 74  DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---ILT 130
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQ 215
              +K +G  +E+ +   T LD  R +                     H G T LP++SQ
Sbjct: 131 YATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQ 189
Query: 216 A-----------TPKANLADEDIKALTKRTQDGGTEVVEAK 245
           A             K   A +D++ +    +D   +++E K
Sbjct: 190 AYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK 230

>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 15/161 (9%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           D+D+V+I AG  +KPG TR DL + N  I + +  ++       +  + +NPV+    + 
Sbjct: 74  DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---ILT 130
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQ 215
              +K +G  +E+ +   T LD  R +                     H G T LP++SQ
Sbjct: 131 YATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQ 189
Query: 216 A-----------TPKANLADEDIKALTKRTQDGGTEVVEAK 245
           A             K   A +D++ +    +D   +++E K
Sbjct: 190 AYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK 230

>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate Dehydrogenase From Lactobacillus Pentosus At 2.3 Angstrom Resolution Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82
           S+P+ +  VL   G +G   A  M    +     + D+    T G A D+      +   
Sbjct: 1   SMPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPK 60
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
                +      +D+D+V+I AG P+KPG +R DL N N  I+  +   +     + I  
Sbjct: 61  KIYSGEY--SDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
           + +NPV+    +    +K +G   E+ +   T+LD  R +
Sbjct: 119 VAANPVDI---LTYATWKFSGFPKERVIGSGTSLDSSRLR 155

>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIANTPGVAADVGHINTRSEVAGY 84
           KVAV GAAG IG  L  L+    L+       L L DI   P + A  G +    E   +
Sbjct: 26  KVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDI--EPALKALAG-VEAELEDCAF 82
Query: 85  MGNDQL------GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CP 137
              D++        A +   + I+    PRK GM R DL  +NA I K+   AIA     
Sbjct: 83  PLLDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAAS 142
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKA-GTYNEKKLFGVTTLDVVRAKTF 184
           +  V ++ NP N+   I   + K A G  N + +  +T LD  RA + 
Sbjct: 143 DCRVVVVGNPANTNALI---LLKSAQGKLNPRHVTAMTRLDHNRALSL 187

>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 103/258 (39%), Gaps = 22/258 (8%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
            KVA++GA G +G   A  +    +   L + D+ N      DV  +N     A      
Sbjct: 6   NKVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHGKAFAPQPVKT 63
Query: 89  QLG--QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
             G  +  +D+D+V I AG  +KPG TR +L   N  I K + S +     + I  + +N
Sbjct: 64  SYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
           PV+    +    +K +G   E+ +   TTLD  R +                     H G
Sbjct: 124 PVD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEH-G 179
Query: 207 ITILPLFSQAT----PKANLAD-------EDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
            T LP++S A     P + L +       E++  +    ++    ++E    KG+    +
Sbjct: 180 DTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEK---KGATYYGV 236
Query: 256 AYAGAIFADACLKGLNGV 273
           A + A    A L   N +
Sbjct: 237 AMSLARITKAILHNENSI 254

>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 103/258 (39%), Gaps = 22/258 (8%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
            KVA++GA G +G   A  +    +   L + D+ N      DV  +N     A      
Sbjct: 6   NKVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHGKAFAPQPVKT 63
Query: 89  QLG--QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
             G  +  +D+D+V I AG  +KPG TR +L   N  I K + S +     + I  + +N
Sbjct: 64  SYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
           PV+    +    +K +G   E+ +   TTLD  R +                     H G
Sbjct: 124 PVD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH-G 179
Query: 207 ITILPLFSQAT----PKANLAD-------EDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
            T LP++S A     P + L +       E++  +    ++    ++E    KG+    +
Sbjct: 180 DTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEK---KGATYYGV 236
Query: 256 AYAGAIFADACLKGLNGV 273
           A + A    A L   N +
Sbjct: 237 AMSLARITKAILHNENSI 254

>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 92  QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYCPNAIVNMISNPVNS 150
           +  +D++  ++    PR PGM R DL +IN  I  +   A+ A   PN  V ++ NP N+
Sbjct: 114 EIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNT 173
Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
              I     K A     K    +T LD  RAK
Sbjct: 174 NALIC---LKNAPNIPPKNFHALTRLDENRAK 202

>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From Burkholderia Pseudomallei Length = 331

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 77/174 (44%), Gaps = 18/174 (10%)
Query: 20  GYSSESVPDRKVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDI----ANTPGV 68
           G  S + P ++VAV GAAG I   L        LL K  P++  L L D+    A   GV
Sbjct: 1   GPGSMAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVI--LQLLDLPQAQAAVKGV 58
Query: 69  AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDL 128
             ++        +AG +  D    A +D+DV ++    PR  GM R DL + NA I    
Sbjct: 59  VMELDDC-AFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQ 117
Query: 129 CSAIAKYCPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
            +A+ +     + V ++ NP N+   IA    K A    +K    +  LD  RA
Sbjct: 118 GAALNEVASRDVKVLVVGNPANTNAYIA---MKSAPDLPKKNFTAMLRLDHNRA 168

>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum Length = 329

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 70/165 (42%), Gaps = 18/165 (10%)
Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG I   L        +L K  P++  L L +I N     A  G +    +  
Sbjct: 7   RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEIDDCA 64
Query: 81  ---VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYC 136
              +AG   +     A +D+DV ++    PR PGM R DL   NA I      AI A   
Sbjct: 65  FPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVAS 124
Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
            N  V ++ NP N+   IA    K A +   K    +  LD  RA
Sbjct: 125 RNIKVLVVGNPANTNAYIA---MKSAPSLPAKNFTAMLRLDHNRA 166

>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTF 184
           +A   ++ +G    + +   T LD  R +  
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRAL 152

>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVXTQ 124
Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTF 184
           +A   ++ +G    + +   T LD  R +  
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRAL 152

>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTF 184
           +A   ++ +G    + +   T LD  R +  
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRAL 152

>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 154 IA 155
           +A
Sbjct: 125 VA 126

>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast Enzyme. The Structure Of Sorghum Nadp-Malate Dehydrogenase In Its Oxidized Form Length = 375

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 92  QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYCPNAIVNMISNPVNS 150
           +  ED D  ++    PR PGM R  L +IN  I  D   A+ A    N  V ++ NP N+
Sbjct: 104 EVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT 163
Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
              I     K A     K    +T LD  RAK
Sbjct: 164 NALIC---LKNAPDIPAKNFHALTRLDENRAK 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	300
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	1e-158
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	1e-156
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	1e-147
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	2e-51
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	5e-44
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	8e-44
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	1e-43
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	3e-43
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	5e-43
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	6e-43
3tl2_A	315	Malate dehydrogenase; center for structural genomi	6e-43
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	7e-43
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	1e-42
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	6e-42
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	9e-42
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	7e-41
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	1e-40
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	1e-40
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	5e-40
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	6e-40
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	8e-40
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	8e-40
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	1e-39
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	3e-39
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	4e-39
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	5e-39
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	1e-38
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	2e-38
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	6e-37
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	2e-36
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	3e-36
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	3e-36
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	1e-34
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	1e-34
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	3e-33
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	5e-33
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	6e-09
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	5e-07
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	1e-06
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	2e-06

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score =  442 bits (1138), Expect = e-158
 Identities = 185/274 (67%), Positives = 214/274 (78%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
           +    P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ N PGV AD+ H++T + V
Sbjct: 2   AKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVV 61

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            G++G  QL  AL   D++I+PAGVPRKPGMTRDDLF INAGIVK LC  IAK CP AIV
Sbjct: 62  RGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIV 121

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           N+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA TF A    ++  +V+VPVV
Sbjct: 122 NLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 181

Query: 202 GGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAI 261
           GGHAG+TILPL SQ  P ++   E+I  LT R Q+GGTEVVEAKAG GSATLSMAYA   
Sbjct: 182 GGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVK 241

Query: 262 FADACLKGLNGVPDVVECSFVQSTVTELPFFASK 295
           FADACL+GL G   V+EC+FV S VTELPFFASK
Sbjct: 242 FADACLRGLRGDAGVIECAFVSSQVTELPFFASK 275

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score =  438 bits (1129), Expect = e-156
 Identities = 167/266 (62%), Positives = 206/266 (77%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP+A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITI 209
           ST+PI AEVFKK G YN  K+FGVTTLD+VRA  F A    ++ A V+VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181

Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKG 269
           +PL SQ TPK +   + +  LT R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241

Query: 270 LNGVPDVVECSFVQSTVTELPFFASK 295
           +NG   VVECSFV+S  T+ P+F++ 
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFSTP 267

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score =  415 bits (1069), Expect = e-147
 Identities = 150/268 (55%), Positives = 187/268 (69%), Gaps = 4/268 (1%)

Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG- 60

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           +    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 61  EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGI 207
           VN+TV IAAEV KKAG Y++ KLFGVTTLD++R+ TF A        EV VPV+GGH+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + +
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239

Query: 268 KGLNGVPDVVECSFVQSTVTELPFFASK 295
           + L G   VVEC++V+       FF+  
Sbjct: 240 RALQGEQGVVECAYVEGDGQYARFFSQP 267

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score =  171 bits (435), Expect = 2e-51
 Identities = 68/259 (26%), Positives = 103/259 (39%), Gaps = 23/259 (8%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGYMG 86
            K+ ++GAAG IG  +A    +  L   L LYD       GVA ++ H     E      
Sbjct: 9   EKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRH--CGFEGLNLTF 66

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI-VNMIS 145
              + +AL D+  ++   G PRK GMTR+DL   NA I   L   I  YCP+   V +I 
Sbjct: 67  TSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF 126

Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGH 204
           NP + T  +       +G     ++  +  LD  R ++  A    +  + V N    GGH
Sbjct: 127 NPADITGLVT---LIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH 182

Query: 205 AGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLS 254
            G  +    S A               L +E    L +R   GG  +++ +    S+  S
Sbjct: 183 -GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR--GRSSFQS 239

Query: 255 MAYAGAIFADACLKGLNGV 273
            +Y       A + G    
Sbjct: 240 PSYVSIEMIRAAMGGEAFR 258

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score =  151 bits (384), Expect = 5e-44
 Identities = 76/251 (30%), Positives = 122/251 (48%), Gaps = 24/251 (9%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
           KV V+GA G +G  +A  +    +   + + DI +    G A D+          + V G
Sbjct: 2   KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTG 60

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
              ND      EDSDV II AG+PR PGM+RDDL   N  IV  +     +  P++ + +
Sbjct: 61  --TNDY--GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
           ++NP++    +   V  +A  +   ++ G+   LD  R ++F A + +V+V +V   ++G
Sbjct: 117 VANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMG 172

Query: 203 GHAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257
           GH G T++PL    T    P   L D   I+ + +RT+  G E+V+      SA  +   
Sbjct: 173 GH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM--GTSAWYAPGA 229

Query: 258 AGAIFADACLK 268
           A A   +A LK
Sbjct: 230 AAAEMTEAILK 240

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score =  150 bits (382), Expect = 8e-44
 Identities = 68/256 (26%), Positives = 114/256 (44%), Gaps = 26/256 (10%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV----AADVGHINTRSEVAGYM 85
           KV+V+GAAG +G      + L  +   +   DI +        AAD  H         Y 
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH------GIAYD 55

Query: 86  GNDQLGQA----LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            N ++ Q        SDVV+I AG+PR+PG TR DL   NA I++D+ S++ ++  + I 
Sbjct: 56  SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS 115

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPV 200
              SNPV+    +      +AG  + +++ G    LD  R +   + + +  V  V   +
Sbjct: 116 LTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTI 171

Query: 201 VGGHAGITILPLFSQAT---PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257
           +G H G   +P+FS+ +        + ++ + L    Q+   +V+E    KG+     A 
Sbjct: 172 LGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIER---KGATEWGPAR 227

Query: 258 AGAIFADACLKGLNGV 273
             A   +A L     V
Sbjct: 228 GVAHMVEAILHDTGEV 243

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score =  149 bits (380), Expect = 1e-43
 Identities = 82/256 (32%), Positives = 130/256 (50%), Gaps = 23/256 (8%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
           K+ V+GA G +G   A  +    L   L L D+      G A D+          ++V G
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
              ND       +SD+VII AG+PRKPGMTR+DL   NAGIVK++   I K+  N I+ +
Sbjct: 61  --SNDY--ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
           +SNP++    I   V        ++++ G+   LD  R ++F A +  V++ ++N  V+G
Sbjct: 117 VSNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLG 172

Query: 203 GHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257
           GH G  ++P+    T    P ++L   E I  L +RT++GG E+VE    +GSA  + A 
Sbjct: 173 GH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPAS 230

Query: 258 AGAIFADACLKGLNGV 273
           +     ++ +     V
Sbjct: 231 SVVEMVESIVLDRKRV 246

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score =  149 bits (379), Expect = 3e-43
 Identities = 65/255 (25%), Positives = 111/255 (43%), Gaps = 27/255 (10%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGH----INTRSEV 81
           KV ++GA+G +G   ALL+   P +  L L    +      G+  D+        + + +
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
                 +   + +++SDVVII +GVPRK GM+R DL   NA IV      IA+ C   I 
Sbjct: 62  YVESDENL--RIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF 119

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPV 200
            +I+NPV+    +          +   ++FG+ T LD +R K   A    V++ EV   +
Sbjct: 120 -VITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRI 174

Query: 201 VGGHAGITILPLFSQATPK-------ANLADEDIKALTKRTQDGGTEVVEAKAGKGSATL 253
           +G H G +++PL S  +             +  I  + +  +  G +++     KG +  
Sbjct: 175 IGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRL---KGGSEF 230

Query: 254 SMAYAGAIFADACLK 268
             A A        + 
Sbjct: 231 GPAAAILNVVRCIVN 245

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score =  148 bits (377), Expect = 5e-43
 Identities = 79/257 (30%), Positives = 123/257 (47%), Gaps = 29/257 (11%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
           RK+AV+G+ G IG  +A ++  + L + + L+DIA     G A D+ H      + S+V 
Sbjct: 5   RKIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   +D     +  SDVVII A +P +P   R +L   NA I+  +   + KYCPNA V 
Sbjct: 63  G--TDDY--ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVI 118

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
            I+NP++    +    F+K       K+ G+   LD  R +TF A    VN ++V+  V+
Sbjct: 119 CITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVI 174

Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           GGH G  ++P  S  +           +  +  E I  +   T+    EV +     G+A
Sbjct: 175 GGH-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTA 232

Query: 252 TLSMAYAGAIFADACLK 268
             + A A    A+A LK
Sbjct: 233 YFAPAAAAVKMAEAYLK 249

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score =  149 bits (378), Expect = 6e-43
 Identities = 87/263 (33%), Positives = 131/263 (49%), Gaps = 29/263 (11%)

Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----IN 76
           +  +  +K++++GA G IG  +ALL+    L   + ++DI      G A D+ H    I 
Sbjct: 9   NTVIMRKKISIIGA-GQIGSTIALLLGQKDL-GDVYMFDIIEGVPQGKALDLNHCMALIG 66

Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           + +++ G   N+   + L++SDVVII AGVPRKP MTR DL  +NA IV  +   + KYC
Sbjct: 67  SPAKIFG--ENNY--EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC 122

Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAE 195
           PNA V  I+NP++         FK+       K+ G+   LD  R +   +    V  ++
Sbjct: 123 PNAFVICITNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSD 178

Query: 196 VNVPVVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAK 245
           V+  VVGGH G  ++PL S  T           +  +    I  + K+T  GG E+VE  
Sbjct: 179 VSAIVVGGH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL 237

Query: 246 AGKGSATLSMAYAGAIFADACLK 268
              GSA  + A +    A A LK
Sbjct: 238 -KTGSAFYAPAASAVAMAQAYLK 259

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score =  148 bits (377), Expect = 6e-43
 Identities = 81/261 (31%), Positives = 131/261 (50%), Gaps = 26/261 (9%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA----DVGH--- 74
           ++ ++  +KV+V+GA G  G   A L+    L + + L DI            D+     
Sbjct: 2   NAMTIKRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASP 59

Query: 75  -INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
                + + G   +D       DSDVV+I AG+ RKPGM+RDDL   N+ I+K +   IA
Sbjct: 60  VQGFDANIIG--TSDY--ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIA 115

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
           K+ PNAI+ +++NPV+           K   + ++++ G    LD  R +TF A + N++
Sbjct: 116 KHSPNAIIVVLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLS 171

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVEAKAG 247
           V ++   V+GGH G  ++PL   +     P   L   E ++A+ +RT+ GG E+V    G
Sbjct: 172 VKDITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG-LLG 229

Query: 248 KGSATLSMAYAGAIFADACLK 268
            GSA  + A +     +A LK
Sbjct: 230 NGSAYYAPAASLVEMTEAILK 250

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score =  148 bits (376), Expect = 7e-43
 Identities = 74/252 (29%), Positives = 124/252 (49%), Gaps = 24/252 (9%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
           +K++++GA G +G   A  +    L   + L DI      G A D+            V 
Sbjct: 3   KKISIIGA-GFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT 60

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   N+       +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ 
Sbjct: 61  G--TNNY--ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVII 116

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           M++NP++        +  +   + ++++ G    LD  R +TF A +A V+V +V   ++
Sbjct: 117 MVNNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLM 172

Query: 202 GGHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           GGH G  ++PL   +     P +   A + +  + +RT+ GG E+V      GSA  + A
Sbjct: 173 GGH-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTGSAYYAPA 230

Query: 257 YAGAIFADACLK 268
            A A   +A LK
Sbjct: 231 AATAQMVEAVLK 242

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score =  148 bits (375), Expect = 1e-42
 Identities = 92/257 (35%), Positives = 133/257 (51%), Gaps = 29/257 (11%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
           +K+ ++GA G IG  LA L  +  L   + L+DIA     G A D+           +V 
Sbjct: 6   KKITLVGA-GNIGGTLAHLALIKQL-GDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVR 63

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   ND   + LE+SDVVI+ AGVPRKPGM+RDDL  IN  +++ +   I   CPNA V 
Sbjct: 64  G--TNDY--KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVI 119

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
            I+NP++    I   + +K     + K+ G+   LD  R +TF A + NV+V +V   V+
Sbjct: 120 CITNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVM 175

Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           GGH G T++PL   +            +  L  E + A+  RT+ GG E+V      GSA
Sbjct: 176 GGH-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSA 233

Query: 252 TLSMAYAGAIFADACLK 268
             + A AG   A++ LK
Sbjct: 234 YYAPAAAGIQMAESFLK 250

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score =  146 bits (371), Expect = 6e-42
 Identities = 84/257 (32%), Positives = 129/257 (50%), Gaps = 29/257 (11%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
            K+A++G+ G IG  LA L  L  L   + L+DIA     G   D+          ++  
Sbjct: 8   NKIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFT 65

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   ND    A+E +DVVI+ AGVPRKPGM+RDDL  IN  +++ + + I KY P A V 
Sbjct: 66  G--ANDY--AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVI 121

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
            I+NP++          +K       K+ G+   LD  R + F + + NV+V +V V V+
Sbjct: 122 CITNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVL 177

Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           GGH G +++PL   +T               + + +  + +RT+DGG E+V      GSA
Sbjct: 178 GGH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSA 235

Query: 252 TLSMAYAGAIFADACLK 268
             + A +    A++ LK
Sbjct: 236 FYAPAASAIQMAESYLK 252

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  145 bits (369), Expect = 9e-42
 Identities = 58/262 (22%), Positives = 110/262 (41%), Gaps = 32/262 (12%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +KV ++G  G +G   A  M    +     + D+    T G A D+           +  
Sbjct: 6   QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLED------AQAFTA 58

Query: 87  NDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
             ++        +D+D+V+I AG P+KPG +R DL N N  I+  +   +     + I  
Sbjct: 59  PKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           + +NPV+    I      K   + ++++ G  T+LD  R +     + NV+   V+  ++
Sbjct: 119 VAANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIM 174

Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           G H G +    +S AT           +  ++D+D+  L    ++   +++     KG+ 
Sbjct: 175 GEH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN---LKGAT 230

Query: 252 TLSMAYAGAIFADACLKGLNGV 273
              +  A    + A L+  N V
Sbjct: 231 FYGIGTALMRISKAILRDENAV 252

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score =  143 bits (363), Expect = 7e-41
 Identities = 66/279 (23%), Positives = 110/279 (39%), Gaps = 46/279 (16%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
            KV ++G  G +G   A  +    +V  L + D+      G   D+ H         R +
Sbjct: 7   NKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVK 65

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
              Y           D+D+V+I AG  +KPG TR DL + N  I K +   +     + I
Sbjct: 66  AGEY-------SDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGI 118

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
             + +NPV+    I A    K     ++++ G  T LD  R +   +   +V    V+  
Sbjct: 119 FLVATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQ 174

Query: 200 VVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKA--- 246
           ++G H G T LP++S A            +       I+ +  +T+D   ++++AK    
Sbjct: 175 IIGEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATY 233

Query: 247 -GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDV 276
            G       +    AIF +        A L+G     DV
Sbjct: 234 YGVAMGLARI--TEAIFRNEDAVLTVSALLEGEYEEEDV 270

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score =  142 bits (361), Expect = 1e-40
 Identities = 64/250 (25%), Positives = 111/250 (44%), Gaps = 25/250 (10%)

Query: 31  VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAGY 84
           + +LGA G +G   A+++ +      L L         G A D+ H    +     ++G 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG- 58

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144
             N    + +  SD+V++ AG+ RKPGMTR+ L   NA  + DL   I  Y  +AIV + 
Sbjct: 59  -SNSY--EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVIT 115

Query: 145 SNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGG 203
           +NPV+        V  K   +  +++ G    LD  R   + + K  V+   VN  V+G 
Sbjct: 116 TNPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGM 171

Query: 204 HAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYA 258
           H G  + P+   ++    P  +L   E+I+ +   T + G ++ E +    S+    A  
Sbjct: 172 H-GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELR--GYSSNYGPAAG 228

Query: 259 GAIFADACLK 268
             +  +A  +
Sbjct: 229 LVLTVEAIKR 238

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score =  142 bits (361), Expect = 1e-40
 Identities = 65/259 (25%), Positives = 116/259 (44%), Gaps = 27/259 (10%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH-INTRSEVAGYM 85
           +KVA++G+ G IG  +  L  L  L   + LYD+      G A D+ H  +         
Sbjct: 10  KKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 67

Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAI 140
                  AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 68  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 127

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
           + +++NP++       +V  +A       + G+   LD  R + + A   +V+  +V   
Sbjct: 128 IIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQAT 183

Query: 200 VVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKG 249
           V+G H G  ++PL    T              + ++ ++ + + T+  G E+V    G+G
Sbjct: 184 VIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-GQG 241

Query: 250 SATLSMAYAGAIFADACLK 268
           SA  + A +    A + L 
Sbjct: 242 SAYYAPAASAVAMATSFLN 260

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score =  141 bits (357), Expect = 5e-40
 Identities = 67/263 (25%), Positives = 114/263 (43%), Gaps = 33/263 (12%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +KV ++G  G +G   A  M L  +   + + DI    T G A D+ +         +  
Sbjct: 10  QKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSN------ALPFTS 62

Query: 87  NDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
             ++        +D+D+V+I AG P+KPG TR DL N N  I+K +   I     N I  
Sbjct: 63  PKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFL 122

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           + +NPV+    I      K   + + ++ G  T+LD  R +   A   NV+   V+  ++
Sbjct: 123 VAANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIM 178

Query: 202 GGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGS 250
           G H G T  P++S A                + ++ +  + +  +D   E+++    KG+
Sbjct: 179 GEH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIK---LKGA 234

Query: 251 ATLSMAYAGAIFADACLKGLNGV 273
               +A A A  + A L   N V
Sbjct: 235 TFYGIATALARISKAILNDENAV 257

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score =  140 bits (356), Expect = 6e-40
 Identities = 65/280 (23%), Positives = 104/280 (37%), Gaps = 47/280 (16%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
            +V V+GA G +G      +    +   + L D       G A D  H            
Sbjct: 7   ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW 65

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
              Y           D+D+V+I AG  +KPG TR DL + N  I + +  ++       +
Sbjct: 66  HGDY-------DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGL 118

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
             + +NPV+    I      K      +++ G  T LD  R +       +V    V+  
Sbjct: 119 FLVATNPVD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAY 174

Query: 200 VVGGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKA-- 246
           ++G H G T LP++SQA             K   A +D++ +    +D   +++E K   
Sbjct: 175 IIGEH-GDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGAT 233

Query: 247 --GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDV 276
             G       +    AI  +        A L GL G  DV
Sbjct: 234 YYGIAMGLARV--TRAILHNENAILTVSAYLDGLYGERDV 271

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score =  140 bits (356), Expect = 8e-40
 Identities = 71/274 (25%), Positives = 117/274 (42%), Gaps = 38/274 (13%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----I 75
           +  +V   K+AV+GA G +G  LA       +   + L DIA         D+ H     
Sbjct: 1   AETTVKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFY 59

Query: 76  NTRSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
            T S              +   D+D+V+I AG  +KPG +R +L      I+K +   + 
Sbjct: 60  PTVSIDGSDDP-------EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLV 112

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
           K  PNAI  +I+NPV+    IA  V +K     E ++FG  T LD  R +   A +  VN
Sbjct: 113 KVAPNAIYMLITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVN 168

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT-------------PKANLADEDIKALTKRTQDGGT 239
           V  V+  + G H G + +PL+  AT                 L  +  + + +  ++   
Sbjct: 169 VKNVHAYIAGEH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAY 227

Query: 240 EVVEAKAGKGSATLSMAYAGAIFADACLKGLNGV 273
           +++    GKG+   ++  +G    +A L   N +
Sbjct: 228 KIIN---GKGATNYAIGMSGVDIIEAVLHDTNRI 258

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score =  140 bits (356), Expect = 8e-40
 Identities = 62/280 (22%), Positives = 104/280 (37%), Gaps = 47/280 (16%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
            KVA++GA G +G   A  +    +   L + D+      G   D+ H         ++ 
Sbjct: 6   NKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTS 64

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
              Y       +  +D+D+V I AG  +KPG TR +L   N  I K + S +     + I
Sbjct: 65  YGTY-------EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGI 117

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
             + +NPV+    I      K     ++++ G  TTLD  R +   +         V   
Sbjct: 118 FLVATNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAH 173

Query: 200 VVGGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKA-- 246
           ++G H G T LP++S A                   E++  +    ++    ++E K   
Sbjct: 174 IIGEH-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKKGAT 232

Query: 247 --GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDV 276
             G   +   +    AI  +          L G  G  DV
Sbjct: 233 YYGVAMSLARI--TKAILHNENSILTVSTYLDGQYGADDV 270

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  139 bits (354), Expect = 1e-39
 Identities = 76/284 (26%), Positives = 123/284 (43%), Gaps = 47/284 (16%)

Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82
                KVA++GA G +G   A  M L    + L L D+      G A D+ H        
Sbjct: 4   VKSRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH------GL 56

Query: 83  GYMGNDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
            +MG   L       ++D DV+++ AG  RKPG TR DL   N  I K++   I KY  +
Sbjct: 57  PFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNH 116

Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVN 197
            ++ ++SNPV+    I   + +K       K+ G  T LD +R +   + K  V+V  V+
Sbjct: 117 GVILVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVH 172

Query: 198 VPVVGGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAK 245
             ++G H G + LPL+S               PK N  +ED K + +  +  G  +++  
Sbjct: 173 GYIIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIK-- 229

Query: 246 AGKGSAT----LSMAY-AGAIFAD--------ACLKGLNGVPDV 276
             KG+      +S+      +  +          + G+ G+ DV
Sbjct: 230 -NKGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIEDV 272

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score =  139 bits (352), Expect = 3e-39
 Identities = 70/277 (25%), Positives = 120/277 (43%), Gaps = 44/277 (15%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
           K+ ++G  G +G   A  + +      + L D+      G A D+ H         +   
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIH------GTPFTRR 54

Query: 88  DQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
             +       L+ SDVVI+ AGVP+KPG TR  L   NA ++K++   ++KY P++IV +
Sbjct: 55  ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
           ++NPV+    +    F K    + +K+FG  T LD  R +T  A     +   V+V V+G
Sbjct: 115 VTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIG 170

Query: 203 GHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKA----G 247
            H G + +P++S A                   + ++   ++T+    E++E K      
Sbjct: 171 EH-GDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERKGATHYA 229

Query: 248 KGSATLSMAYAGAIFAD--------ACLKGLNGVPDV 276
              A   +    +IF D          L+   GV D+
Sbjct: 230 IALAVADI--VESIFFDEKRVLTLSVYLEDYLGVKDL 264

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score =  138 bits (351), Expect = 4e-39
 Identities = 71/262 (27%), Positives = 120/262 (45%), Gaps = 36/262 (13%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
            K+ ++G+ G IG  +A L+    L   + L+DI      G A D  H      +  +V+
Sbjct: 5   AKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVS 62

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCP 137
           G   N      L  +DVVI+ AG  + PG +     RDDL  +N  I+ ++   I K CP
Sbjct: 63  G--SNTY--DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP 118

Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEV 196
           NA + +++NPV+    +  ++  +     + K+ G+   LD  R K + + K NV   +V
Sbjct: 119 NAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV 174

Query: 197 NVPVVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKA 246
           N  +VG H G  ++ L    T              ++D +++A+  RT +   E+V    
Sbjct: 175 NAHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL-- 231

Query: 247 GKGSATLSMAYAGAIFADACLK 268
              S  ++ A A    A++ LK
Sbjct: 232 -HASPYVAPAAAIIEMAESYLK 252

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score =  138 bits (350), Expect = 5e-39
 Identities = 59/278 (21%), Positives = 106/278 (38%), Gaps = 45/278 (16%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
           KV ++G+ G +G   A  + L  +   + L D+        A D+ H         +   
Sbjct: 2   KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILH------ATPFAHP 54

Query: 88  DQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
             +       LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ +
Sbjct: 55  VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
            +NPV+    +  +V          ++ G  T LD  R +   A    V    V+  V+G
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLG 170

Query: 203 GHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAKA---- 246
            H G + + ++S A                 L+ ED   + +  +     ++E K     
Sbjct: 171 EH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYY 229

Query: 247 GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDV 276
           G G+    +    AI  D        A    + GV +V
Sbjct: 230 GIGAGLARL--VRAILTDEKGVYTVSAFTPEVAGVLEV 265

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score =  136 bits (346), Expect = 1e-38
 Identities = 67/251 (26%), Positives = 113/251 (45%), Gaps = 25/251 (9%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
           K+  +GA G +G   A    LN  V  +AL DIA     G A D+ H    I+   ++ G
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
             G D     L+ S+++++ AG+ RKPGMTR DL + NAGI+KD+   I +  P + + +
Sbjct: 61  --GADY--SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILV 116

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
           ++NP++    +   +  K       ++FG+   LD  R K         N+      ++G
Sbjct: 117 VTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNI--RRAWIIG 170

Query: 203 GHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIF 262
            H G ++    S A       + D +A+    +    EV++    KG+     A A    
Sbjct: 171 EH-GDSMFVAKSLADFD---GEVDWEAVENDVRFVAAEVIKR---KGATIFGPAVAIYRM 223

Query: 263 ADACLKGLNGV 273
             A ++    +
Sbjct: 224 VKAVVEDTGEI 234

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score =  136 bits (346), Expect = 2e-38
 Identities = 66/271 (24%), Positives = 113/271 (41%), Gaps = 37/271 (13%)

Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INT 77
           E VP  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H    + T
Sbjct: 15  EQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKT 73

Query: 78  RSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
              V+   Y           +S +VII AG  ++ G +R +L   N  I K +   + KY
Sbjct: 74  PKIVSSKDY-------SVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY 126

Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVA 194
            P   + ++SNPV+    I   V  K   + + ++ G    LD  R +     +  V+  
Sbjct: 127 SPQCKLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPL 182

Query: 195 EVNVPVVGGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVV 242
             +  V+G H G + +P++S                  +   E  K + K+  D   EV+
Sbjct: 183 SCHGWVLGEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVI 241

Query: 243 EAKAGKGSATLSMAYAGAIFADACLKGLNGV 273
           +    KG  + ++  + A  A++ +K L  V
Sbjct: 242 K---LKGYTSWAIGLSVADLAESIMKNLRRV 269

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score =  133 bits (336), Expect = 6e-37
 Identities = 69/258 (26%), Positives = 102/258 (39%), Gaps = 37/258 (14%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVA-------ADVGHI 75
           +V V GAAG I   L        +  K  P++  L L DI    GV         D    
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDITPMMGVLDGVLMELQDCALP 62

Query: 76  NTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
             +  +A     D+   A +D DV I+   +PR+ GM R DL   N  I K   +A+ KY
Sbjct: 63  LLKDVIAT----DKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKY 118

Query: 136 CPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
              ++ V ++ NP N+    A+   K A +  ++    +T LD  RAK   A K  V   
Sbjct: 119 AKKSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSD 175

Query: 195 EVNVPVVGGHAGITILPLFSQAT----PKANLADEDI-------KALTKRTQDGGTEVVE 243
           +V   ++ G+   T  P  + A      K     E +              Q  G  V++
Sbjct: 176 DVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK 235

Query: 244 AKAGKGSATLSMAYAGAI 261
           A+    SA +S A A   
Sbjct: 236 AR-KLSSA-MSAAKAICD 251

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score =  132 bits (333), Expect = 2e-36
 Identities = 54/266 (20%), Positives = 95/266 (35%), Gaps = 27/266 (10%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----I 75
           S E     K+ V+G    +G   A+ + +  L   +AL D+      G   D+ H    +
Sbjct: 15  SQEPRSYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFL 73

Query: 76  NTRSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
           +T   V+G  Y            S +V+I AG  ++ G +R +L   N  I K +   I 
Sbjct: 74  HTAKIVSGKDY-------SVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIV 126

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
           K+ P+ +  +             +   K       ++ G    LD  R +     +  V+
Sbjct: 127 KHSPDCLKELHPELGT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVH 182

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAG 247
              V   V+G H G ++  ++S        K  + +  ++  L   T      VV     
Sbjct: 183 SCLVIGWVIGQH-GDSVPSVWSGMWDAKLHKDVVDSAYEVIKLKGYTSWAIGLVVSNPVD 241

Query: 248 KGSATLSMAYAGAIFADACLKGLNGV 273
             +       + A  A   +K L  V
Sbjct: 242 VLTYVAWKGCSVADLAQTIMKDLCRV 267

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score =  130 bits (330), Expect = 3e-36
 Identities = 48/256 (18%), Positives = 87/256 (33%), Gaps = 27/256 (10%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTPGVAADVGHINTRSE 80
           + E+    K+ V+G  G +G    L +    +  RL L D++  T G   D+   N  + 
Sbjct: 8   NHENKTVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNV 66

Query: 81  VAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
                         A   S VVI           +  D+   N  + + L  A+  Y  +
Sbjct: 67  EISKDL-------SASAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQH 118

Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVN 197
           +++ + S P    V I   V  K  T+   ++ G+   LD  R +           +   
Sbjct: 119 SVLLVASQP----VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKE 174

Query: 198 VPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257
           V V+G   G   +  +S                  +  +   E++     KG  + S+  
Sbjct: 175 VWVIGEQ-GEDKVLTWSGQEE------VVSHTSQVQLSNRAMELLR---VKGQRSWSVGL 224

Query: 258 AGAIFADACLKGLNGV 273
           + A   D+ +     V
Sbjct: 225 SVADMVDSIVNNKKKV 240

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score =  131 bits (331), Expect = 3e-36
 Identities = 67/263 (25%), Positives = 96/263 (36%), Gaps = 34/263 (12%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTP------GVA---ADVG 73
           +VAV GAAG I   L        +L K  P++  L L +I N        GV     D  
Sbjct: 7   RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEIDDCA 64

Query: 74  HINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
                   A          A +D+DV ++    PR PGM R DL   NA I      AI 
Sbjct: 65  FPLLAGMTAH----ADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120

Query: 134 KYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
                N  V ++ NP N+   IA    K A +   K    +  LD  RA +  A K    
Sbjct: 121 AVASRNIKVLVVGNPANTNAYIAM---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKP 177

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----PKANLADED---IKALTKRTQDGGTEVVEAK 245
           V+ +    V G+   T+   +  A        ++ ++D              G  +++A+
Sbjct: 178 VSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR 237

Query: 246 AGKGSATLSMAYAGAIFADACLK 268
            G  SA  +   A     D  L 
Sbjct: 238 -GVSSAASAANAAIDHIHDWVLG 259

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score =  127 bits (321), Expect = 1e-34
 Identities = 68/254 (26%), Positives = 96/254 (37%), Gaps = 34/254 (13%)

Query: 30  KVAVLGAAGGIGQPLAL------LMKLNPLVSRLALYDIANTPGVAA---------DVGH 74
           +VAV GAAG IG  L        ++  +  V  L L +I     + A         D   
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI-LQLLEI--PQAMKALEGVVMELEDCAF 62

Query: 75  INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                  A     D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+
Sbjct: 63  PLLAGLEAT----DDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAE 118

Query: 135 YCPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
                + V ++ NP N+   IA    K A   N +    +T LD  RAK   A K    V
Sbjct: 119 VAKKDVKVLVVGNPANTNALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGV 175

Query: 194 AEVNVPVVGGHAGITILPLFSQAT----PKANLADED--IKALTKRTQDGGTEVVEAKAG 247
             +    V G+   T+ P    A     P   L D +   K         G  +++A+ G
Sbjct: 176 DRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-G 234

Query: 248 KGSATLSMAYAGAI 261
             SA  S A A   
Sbjct: 235 ASSA-ASAANAAIE 247

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score =  126 bits (319), Expect = 1e-34
 Identities = 65/264 (24%), Positives = 106/264 (40%), Gaps = 38/264 (14%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH-----INTRSEVA 82
           KV V+G  G +G   A  + L    S L L D         A D+ H       TR    
Sbjct: 2   KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG 60

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G+         L D+ VVI+ AG  +KPG +R DL   NA I ++L   I +  P+A++ 
Sbjct: 61  GH-------SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLL 113

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           + SNPV+    +  ++  +        + G  T LD  R +   A  A V+    +  V+
Sbjct: 114 VTSNPVD----LLTDLATQLAPGQ--PVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVL 167

Query: 202 GGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAKAGKG 249
           G H G + +  +S A                   ++    + + T++    ++E   GK 
Sbjct: 168 GEH-GDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIE---GKR 223

Query: 250 SATLSMAYAGAIFADACLKGLNGV 273
           +    +  A A   +A L+    V
Sbjct: 224 ATYYGIGAALARITEAVLRDRRAV 247

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375

 Score =  124 bits (313), Expect = 3e-33
 Identities = 67/253 (26%), Positives = 93/253 (36%), Gaps = 33/253 (13%)

Query: 30  KVAVLGAAGGIGQPLALL------MKLNPLVSRLALYDIANTP----GVA---ADVGHIN 76
            +AV GAAG I   L            +  ++ L L     +     GVA    D  +  
Sbjct: 34  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA-LKLLGSERSFQALEGVAMELEDSLYPL 92

Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
            R    G        +  ED D  ++    PR PGM R  L +IN  I  D   A+    
Sbjct: 93  LREVSIG----IDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVA 148

Query: 137 P-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAE 195
             N  V ++ NP N+   I     K A     K    +T LD  RAK   A KA V   +
Sbjct: 149 SKNVKVLVVGNPCNTNALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDK 205

Query: 196 VNVPVVGGHAGITILPLFSQATPKANLADEDIK-------ALTKRTQDGGTEVVEAKAGK 248
           V+   + G+   T +P F  A        E IK         T   Q  G  +++   G+
Sbjct: 206 VSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GR 264

Query: 249 GSATLSMAYAGAI 261
            SA    + A +I
Sbjct: 265 SSA---ASTAVSI 274

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score =  122 bits (309), Expect = 5e-33
 Identities = 51/265 (19%), Positives = 98/265 (36%), Gaps = 36/265 (13%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH------INTRSE 80
           RK+ ++G  G +G  +A  +    +       D           D          +    
Sbjct: 2   RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV 60

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPR----KPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           +  +        AL D+DVVI   G  +     P   R       + +V+ + + + +  
Sbjct: 61  INDW-------AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG 113

Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAE 195
            + ++ +ISNPV+    +   +F+    +   K+ G  T LD  R +       +++   
Sbjct: 114 FHGVLVVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRS 169

Query: 196 VNVPVVGGHAGITILPLFSQAT----PKANLAD---EDIKALTKRTQDGGTEVVEAKAGK 248
           V+   +G H G +    +S       P   LAD    D+ A+ +  + GG  V+    GK
Sbjct: 170 VSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLN---GK 225

Query: 249 GSATLSMAYAGAIFADACLKGLNGV 273
           G  +  +A +    A A +   +  
Sbjct: 226 GYTSYGVATSAIRIAKAVMADAHAE 250

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450

 Score = 55.5 bits (133), Expect = 6e-09
 Identities = 42/207 (20%), Positives = 69/207 (33%), Gaps = 30/207 (14%)

Query: 25  SVPDRKVAVLGAAGGIGQPLAL---LMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
           S+   K+A +G  G  G   +L   L     +   +ALYD+      A     I   S  
Sbjct: 2   SLDQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLD--FEAAQKNEVIGNHSGN 58

Query: 82  AG--YMGNDQLGQALEDSDVVIIPAGV------------PRKPGMTRDDLFNINAG---- 123
               Y     L +AL  +D+VII                P + G+ +     +  G    
Sbjct: 59  GRWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIR 118

Query: 124 ------IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLD 177
                 I  ++  AI  Y P + V   +NP++    +  +VF              T   
Sbjct: 119 GLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKL 178

Query: 178 VVRAKTFYAGKANVNVAEVNVPVVGGH 204
           +    T   G       ++ V V+G +
Sbjct: 179 LAEMVTERLGIEVPRREDIRVNVLGIN 205

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472

 Score = 49.8 bits (118), Expect = 5e-07
 Identities = 28/146 (19%), Positives = 46/146 (31%), Gaps = 28/146 (19%)

Query: 30  KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDI-ANTPGVAADVGH--INTRSEVA 82
            + + G  G    P   L LL  L    + +L LYD         A      I  ++   
Sbjct: 30  SIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDI 88

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGI------------------ 124
            +       +A  D D V+    V +      D+   +  G+                  
Sbjct: 89  EFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSI 148

Query: 125 --VKDLCSAIAKYCPNAIVNMISNPV 148
             V ++   + KY P+A +   SNP 
Sbjct: 149 GGVLEILDYMEKYSPDAWMLNYSNPA 174

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450

 Score = 48.6 bits (115), Expect = 1e-06
 Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 28/147 (19%)

Query: 30  KVAVLGAAGGI--GQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTR-SEVAG-- 83
           K+A +G            L+ + + L V  L L DI         VG +  R  E AG  
Sbjct: 9   KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVP 68

Query: 84  --YMGNDQLGQALEDSDVVIIPAGV------------PRKPGMTRDDLFNI--------N 121
                     +AL+ +D V     V            P K G+   +             
Sbjct: 69  IEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRT 128

Query: 122 AGIVKDLCSAIAKYCPNAIVNMISNPV 148
             ++ D+   + + CP+A +   +NP 
Sbjct: 129 IPVILDIIRDMEELCPDAWLINFTNPA 155

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 480

 Score = 47.6 bits (112), Expect = 2e-06
 Identities = 32/206 (15%), Positives = 52/206 (25%), Gaps = 43/206 (20%)

Query: 30  KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDIA--NTPGVAADVGHINTRSEVAG 83
           K+ ++GA G        ++ L K   L  S + L DI       +               
Sbjct: 5   KIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADL 63

Query: 84  -YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGI------------------ 124
            +     L   + D+D VI  A V     + +        G                   
Sbjct: 64  KFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTF 123

Query: 125 --------VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL 176
                     D+   I K  P A     +NP+         +  +       K  G    
Sbjct: 124 SNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEG----TTLVTRTVPI---KAVGFC-- 174

Query: 177 DVVRAKTFYAGKANVNVAEVNVPVVG 202
                      K  +   +V+  V G
Sbjct: 175 HGHYGVMEIVEKLGLEEEKVDWQVAG 200

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	100.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	100.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	100.0
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	100.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	100.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	100.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	100.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	100.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	100.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	100.0
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	100.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	100.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	100.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	100.0
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	100.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	100.0
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	100.0
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	100.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	100.0
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	100.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	100.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	100.0
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	100.0
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	100.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	100.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	100.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	100.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	100.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	100.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	100.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	100.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	100.0
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	100.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	100.0
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	100.0
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	100.0
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	100.0
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	100.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	100.0
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	100.0
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	99.96
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	99.93
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	99.93
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.82
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.75
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.55
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.52
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	98.49
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.48
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.48
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.45
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	98.45
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.45
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.45
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.44
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.43
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.43
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	98.43
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.41
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	98.39
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.37
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	98.36
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	98.33
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	98.3
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.3
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.29
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	98.29
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	98.29
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	98.29
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.28
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.27
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	98.26
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	98.25
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.25
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	98.24
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	98.24
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	98.23
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	98.23
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.22
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.22
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	98.22
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	98.21
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	98.2
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.2
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	98.2
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	98.19
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	98.19
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	98.18
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	98.17
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	98.17
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	98.16
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.14
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.13
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	98.11
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.11
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.1
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	98.1
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	98.1
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	98.1
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	98.09
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	98.07
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.06
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.06
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.05
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	98.05
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	98.05
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	98.04
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	98.04
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.04
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.03
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	98.02
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	98.01
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.01
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	98.0
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.98
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	97.98
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	97.96
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	97.95
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.95
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	97.93
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	97.93
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	97.93
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	97.93
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	97.92
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	97.92
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	97.91
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.91
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	97.91
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.91
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.9
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.9
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.9
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.89
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	97.89
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	97.89
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	97.89
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	97.89
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.88
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	97.87
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.86
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.86
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.84
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	97.83
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.83
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	97.83
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.82
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	97.82
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.8
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.8
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	97.8
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.79
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.79
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	97.79
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.78
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	97.78
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.76
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	97.76
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.76
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	97.75
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	97.75
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.75
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.74
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	97.73
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.72
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	97.72
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	97.72
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.72
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.71
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.71
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	97.71
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	97.7
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	97.69
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.68
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.67
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	97.67
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.67
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.67
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.66
4f6c_A	427	AUSA reductase domain protein; thioester reductase	97.66
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.65
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.64
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.64
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.62
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.62
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.62
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.62
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.62
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.61
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.6
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	97.6
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	97.6
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	97.6
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	97.6
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.59
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.58
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.58
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.58
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.58
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.57
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	97.57
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.57
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.57
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	97.56
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	97.56
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.56
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.55
4f6l_B	508	AUSA reductase domain protein; thioester reductase	97.55
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.54
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	97.53
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.52
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	97.48
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.48
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	97.48
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.47
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.47
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.46
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.45
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	97.45
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.44
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	97.42
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.41
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.4
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.39
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.37
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	97.37
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.36
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.35
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.34
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.32
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.31
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.3
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.29
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.27
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.26
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.25
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.24
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.23
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.23
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.22
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.22
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.2
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.19
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.19
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.19
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.18
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.18
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.17
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	97.15
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.14
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.13
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.12
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.12
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.1
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	97.08
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.07
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.07
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.07
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.07
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.07
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	97.07
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.06
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.05
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.04
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	97.04
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.04
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.03
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.03
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.02
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.01
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.01
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.0
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.99
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.98
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	96.98
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.97
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.97
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	96.97
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	96.01
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	96.95
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.95
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.95
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.95
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	96.94
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	96.94
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	96.93
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.93
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	96.93
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.93
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.93
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.92
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	96.92
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.92
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.92
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	96.91
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.91
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	96.91
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	96.91
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	96.91
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.91
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.9
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.89
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.88
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	96.88
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.87
1spx_A	278	Short-chain reductase family member (5L265); paral	96.87
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	96.86
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	96.86
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.86
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	96.86
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	96.85
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	96.85
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.85
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.84
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.84
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.84
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.83
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.83
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	96.83
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	96.83
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	96.82
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.82
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.82
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	96.81
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	96.81
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.81
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.81
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	96.81
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	96.81
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.8
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	96.8
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.8
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.79
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.79
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.79
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	96.79
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	96.79
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	96.78
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.78
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.78
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.78
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.77
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	96.76
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.76
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	96.75
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.75
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	96.73
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	96.73
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	96.73
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	96.73
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.73
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.72
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	96.72
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	96.72
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	96.71
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	96.7
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.7
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	96.7
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	96.7
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	96.69
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	96.68
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.67
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	96.67
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.66
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.66
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	96.65
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.65
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.65
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	96.64
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	96.63
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	96.63
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	96.62
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.62
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.61
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	96.61
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	96.61
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	96.61
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	96.59
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.59
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.59
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.58
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	96.58
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.58
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	96.57
4dqx_A	277	Probable oxidoreductase protein; structural genomi	96.57
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.56
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.56
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.56
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.55
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	96.55
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.55
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	96.55
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.55
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.54
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	96.54
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.53
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.53
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	96.51
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.5
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.5
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.48
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.46
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	96.46
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	96.46
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.45
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.45
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.44
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.44
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	96.43
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.43
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	96.42
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.42
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.42
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	96.41
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	96.41
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.4
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	96.39
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	96.38
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.38
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.37
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.37
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.36
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.35
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.35
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.35
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	96.35
1xkq_A	280	Short-chain reductase family member (5D234); parra	96.35
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.35
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.34
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.33
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	96.33
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	96.33
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	96.3
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.3
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	96.28
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.28
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	96.27
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.25
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.25
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.25
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.24
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.23
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.22
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	96.21
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	96.21
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	96.19
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	96.18
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.17
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	96.17
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.16
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	96.16
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	96.16
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.14
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.12
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	96.12
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.11
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	96.11
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	96.1
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	96.1
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.09
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	96.07
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	96.07
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	96.06
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.05
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	96.05
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.04
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	96.04
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.03
2duw_A	145	Putative COA-binding protein; ligand binding prote	96.03
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	96.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.0
4e4y_A	244	Short chain dehydrogenase family protein; structur	95.99
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	95.99
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	95.98
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	95.98
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	95.97
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	95.97
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.97
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.96
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	95.93
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	95.9
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	95.89
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	95.88
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	95.88
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	95.87
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	95.86
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.86
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.83
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	95.83
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	95.83
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	95.81
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	95.8
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.79
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	95.78
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.77
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	95.76
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	95.76
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	95.75
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.72

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=100.00  E-value=7.8e-65  Score=470.46  Aligned_cols=270  Identities=56%  Similarity=0.862  Sum_probs=244.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhC-CCCCEEEEEecCC-cccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~-~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      |||+||||+|+||+++++.|.++ ++.+||+|+|+++ .+|+++||+|...+..+..+.+ ++.+++++|||+||+++|.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~-~~~~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECS-SCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecC-CCcHHHhCCCCEEEEeCCC
Confidence            79999997799999999999887 7788999999975 6799999999755445554432 3446899999999999999


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHHHHHH
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA  186 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~~~la  186 (300)
                      |++|||+|.|++..|++|++++++.|.++||+++++++|||+|++|++++++++.+|.+|++||+|+|.||++|+++++|
T Consensus        80 ~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a~~~~k~sg~~p~~rv~G~~~LD~~R~~~~la  159 (312)
T 3hhp_A           80 ARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVA  159 (312)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHHHHHHHHcCCCCcceEEEEechhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988888888844999999999999999999999


Q ss_pred             HHcCCCCCceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHHHHHHHHH
Q 022263          187 GKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC  266 (300)
Q Consensus       187 ~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i~ai  266 (300)
                      +++|+++++|+++|||||+|+|+||+||++ .+..++++++++|.++++++|++|++.|.|+|+|+||+|.|+++++++|
T Consensus       160 ~~lgv~~~~v~~~V~G~Hsg~t~vp~~S~~-~g~~~~~~~~~~i~~~v~~~g~eIi~~k~g~gst~~s~a~a~~~~~~ai  238 (312)
T 3hhp_A          160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL  238 (312)
T ss_dssp             HHHTCCGGGCCCCEEECSSGGGEEECGGGC-TTCCCCHHHHHHHHHHHHTHHHHHHHHTTTSCCCCHHHHHHHHHHHHHH
T ss_pred             HHhCcChhHcceeEEeccCCCceeeecccC-CCCCCCHHHHHHHHHHHHhhhHHHHhhccCCCCchhHHHHHHHHHHHHH
Confidence            999999999999999999889999999998 4456888889999999999999999977677999999999999999999


Q ss_pred             HccCCCCCCceeeeeeeCCCCCcCEEEEeEEecC
Q 022263          267 LKGLNGVPDVVECSFVQSTVTELPFFASKRAWKN  300 (300)
Q Consensus       267 ~~~~~~~~~v~~~s~v~~~~~~~~~~S~Pv~lg~  300 (300)
                      +.++++++.++||||++|+..+++|||+||++|+
T Consensus       239 ~~~l~~~~~v~~~s~~~g~g~~~v~~s~P~~~g~  272 (312)
T 3hhp_A          239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGK  272 (312)
T ss_dssp             HHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEET
T ss_pred             HHHcCCCCceEEEEEecCCCCcceEEEeEEEEeC
Confidence            7666678899999999987667899999999985

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=100.00  E-value=2.7e-61  Score=447.79  Aligned_cols=272  Identities=61%  Similarity=0.965  Sum_probs=252.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~  108 (300)
                      |||+||||+|+||+++++.|+..++..||+|+|+++.+++++||.|...+..++.+.+|+|++++++|||+||+++|.|+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            69999996699999999999998888899999998888899999998765556655445678788999999999999999


Q ss_pred             CCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHHHHHHHH
Q 022263          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGK  188 (300)
Q Consensus       109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~~~la~~  188 (300)
                      ++|++|.|++.+|+++++++++.|++++|+++++++|||+|++|+++++++++.++||++||+|+|.||+.|+++++|++
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~t~Ld~~r~~~~la~~  160 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAEL  160 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEeecccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998898888878999999999999999999999999


Q ss_pred             cCCCCCceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHHHHHHHHHHc
Q 022263          189 ANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLK  268 (300)
Q Consensus       189 l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i~ai~~  268 (300)
                      +|++|++|+++|||||+|++++|+||++++...+++++++++.++++++|++|++.|.|||+|+||+|.|+++++++|++
T Consensus       161 l~v~~~~v~~~v~G~H~G~~~~p~~s~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k~~~g~t~~~~a~a~~~~~~ai~~  240 (314)
T 1mld_A          161 KGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVD  240 (314)
T ss_dssp             TTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHHH
T ss_pred             hCcChHhEEEEEccCCCCCcEeeecccCCCcccCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHc
Confidence            99999999999999997689999999998766688888999999999999999998778899999999999999999999


Q ss_pred             cCCCCCCceeeeeeeCCCCCcCEEEEeEEecC
Q 022263          269 GLNGVPDVVECSFVQSTVTELPFFASKRAWKN  300 (300)
Q Consensus       269 ~~~~~~~v~~~s~v~~~~~~~~~~S~Pv~lg~  300 (300)
                      |+++++.++++++++|+|++++|||+||++|+
T Consensus       241 ~~~g~~~v~~~~~~~g~y~~~~~~~~P~~ig~  272 (314)
T 1mld_A          241 AMNGKEGVVECSFVKSQETDCPYFSTPLLLGK  272 (314)
T ss_dssp             HHHTCTTCEEEEEEECCSSSSSEEEEEEEEET
T ss_pred             CcCCCcceEEEEEeCCccCCceEEEEEEEEeC
Confidence            98777789999999999988999999999985

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=100.00  E-value=1.8e-61  Score=443.82  Aligned_cols=253  Identities=27%  Similarity=0.394  Sum_probs=223.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC--CcEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      |||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|+...  ...+.. +++|+ ++++|||+||++|
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~-~~~d~-~~~~~aDvVvitA   77 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIV-GGADY-SLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEE-EESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEe-cCCCH-HHhCCCCEEEEec
Confidence            89999995 999999999999999999999999976  68999999997532  222222 24465 7899999999999


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHH
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~  183 (300)
                      |.||+|||+|+||+..|++|+++++++|.++||+++++++|||+|+|||+   +++.+| +|++|+||+ |.||++||++
T Consensus        78 G~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPvd~~t~i---~~k~sg-~p~~rvig~gT~LDs~R~~~  153 (294)
T 2x0j_A           78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYI---MWKESG-KPRNEVFGMGNQLDSQRLKE  153 (294)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHH---HHHHSS-CCTTSEEECCHHHHHHHHHH
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcchhhHHh---hHHHcC-CChhhEEEeeeEEeHHHHHH
Confidence            99999999999999999999999999999999999999999999987776   356665 999999999 8999999999


Q ss_pred             HHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHHHHHH
Q 022263          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFA  263 (300)
Q Consensus       184 ~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i  263 (300)
                      ++++++++++.  +++||||| |+||||+||++++....   +++++.++++++|+||++.   ||+|+||+|.|+++++
T Consensus       154 ~l~~~~~~~~~--~~~V~G~H-Gdt~vp~~S~~~v~g~~---~~~~i~~~~~~~g~eIi~~---kGst~~a~a~a~~~~~  224 (294)
T 2x0j_A          154 RLYNAGARNIR--RAWIIGEH-GDSMFVAKSLADFDGEV---DWEAVENDVRFVAAEVIKR---KGATIFGPAVAIYRMV  224 (294)
T ss_dssp             HHHHTTCEEEC--CCCEEBCS-STTCEECGGGCCEESCC---CHHHHHHHHHTHHHHHHHH---HSSCCHHHHHHHHHHH
T ss_pred             HHhhcccCCcc--eeEEEecC-CCcEEEeeeccCCCCch---hHHHHHHHHhhhheEEEec---CcccchhHHHHHHHHH
Confidence            99999887654  68999999 68999999999876533   4677889999999999984   6899999999999999


Q ss_pred             HHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263          264 DACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       264 ~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                      ++|++|   ++.++||| +++|+| .+++|||+||+||+
T Consensus       225 ~ail~d---~~~v~~~s~~l~g~yG~~~v~~s~P~~lg~  260 (294)
T 2x0j_A          225 KAVVED---TGEIIPTSMILQGEYGIENVAVGVPAKLGK  260 (294)
T ss_dssp             HHHHTT---CCCEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             HHHHcC---CCcEEEEEEEEecCCCCccEEEEEEEEEeC
Confidence            999997   67899998 689999 47899999999986

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=100.00  E-value=6.5e-61  Score=447.12  Aligned_cols=262  Identities=24%  Similarity=0.371  Sum_probs=229.6

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccC-CCcEEEEecCCccccccCCCCEEE
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      ..+++||+|||| |+||+++++.|+.+++++||+|+|+++  ++|+++||+|+.. +...... .++|+ ++++|||+||
T Consensus        16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~-~~~d~-~~~~~aDiVv   92 (331)
T 4aj2_A           16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIV-SSKDY-SVTANSKLVI   92 (331)
T ss_dssp             -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEE-ECSSG-GGGTTEEEEE
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEE-EcCCH-HHhCCCCEEE
Confidence            446789999996 999999999999999999999999975  5899999999852 2121222 24566 5899999999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHH
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR  180 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R  180 (300)
                      ++||.|++|||+|+|++.+|++|++++++.|+++||+++++++|||+|++|+++   ++.+ ++|++|+||+ |.||++|
T Consensus        93 i~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvdi~t~~~---~k~s-g~p~~rviG~gt~LD~~R  168 (331)
T 4aj2_A           93 ITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVA---WKIS-GFPKNRVIGSGCNLDSAR  168 (331)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHH-CCCGGGEEECTTHHHHHH
T ss_pred             EccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH---HHHh-CCCHHHEEeeccccHHHH
Confidence            999999999999999999999999999999999999999999999999665542   3444 5999999999 9999999


Q ss_pred             HHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC------------CCCHHHHHHHHHHHhchhhhhhhhccCC
Q 022263          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEVVEAKAGK  248 (300)
Q Consensus       181 ~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~------------~~~~~~~~~i~~~v~~~g~~i~~~~~gk  248 (300)
                      +++++|+++|+++++|++|||||| |+|+||+||++++++            .+++++|++|.++++++|++|++.   |
T Consensus       169 ~~~~la~~lgv~~~~V~~~ViGeH-G~s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---k  244 (331)
T 4aj2_A          169 FRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKL---K  244 (331)
T ss_dssp             HHHHHHHHHTSCGGGCBCCEEBCS-STTCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHhCCCHHHCEEeEEecC-CCceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhc---C
Confidence            999999999999999999999999 679999999998642            234567899999999999999995   5


Q ss_pred             CCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263          249 GSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWKN  300 (300)
Q Consensus       249 g~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg~  300 (300)
                      |+|+||+|.|+++++++|++|   ++.++|+| |++|+|  ++++|||+||++|+
T Consensus       245 g~t~~a~a~a~a~~~~ail~d---~~~~~~vs~~~~g~ygi~~~v~~s~P~~lg~  296 (331)
T 4aj2_A          245 GYTSWAIGLSVADLAESIMKN---LRRVHPISTMIKGLYGIKEDVFLSVPCILGQ  296 (331)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTT---CCEEEEEEEECTTGGGCCSCCEEEEEEEEET
T ss_pred             CCCchhHHHHHHHHHHHHHhC---CCCeEEEEEecCCccCCcCceEEEEEEEEcC
Confidence            889999999999999999997   57799988 789988  46999999999985

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=100.00  E-value=1.6e-60  Score=441.83  Aligned_cols=259  Identities=29%  Similarity=0.478  Sum_probs=223.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC--CcEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      |||+|||| |.||+++++.|+++++++||+|+|+++  .+|+++||+|+.++  ...+.. ++++ +++++|||+||+++
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~-~~~~-~~a~~~aDvVii~a   77 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVT-GTND-YGPTEDSDVCIITA   77 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEE-EESS-SGGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEE-ECCC-HHHhCCCCEEEECC
Confidence            79999996 999999999999999989999999976  57899999997532  122322 1233 58999999999999


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-ehhHHHHHH
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKT  183 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t-~Lds~R~~~  183 (300)
                      |.|++|||+|.|++..|+++++++++.|+++||+++++++|||+|++|+++   ++.++ ||++||+|+| .||++|+++
T Consensus        78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~---~k~~g-~p~~rviG~~t~LD~~R~~~  153 (314)
T 3nep_X           78 GLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVA---YEASG-FPTNRVMGMAGVLDTGRFRS  153 (314)
T ss_dssp             CC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHHHHHHHH---HHHHT-CCGGGEEECCHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchhHHHHHH---HHhcC-CChHHEEeecCchHHHHHHH
Confidence            999999999999999999999999999999999999999999999877764   44555 9999999996 999999999


Q ss_pred             HHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-----CCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHH
Q 022263          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----NLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYA  258 (300)
Q Consensus       184 ~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-----~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a  258 (300)
                      ++|+++|++|++|+++||||| |+|+||+||++++.+     .++++++++|.++++++|++|+++| |+ +|+||+|.|
T Consensus       154 ~la~~lgv~~~~v~~~ViG~H-g~t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g~-sa~~a~a~a  230 (314)
T 3nep_X          154 FIAEELDVSVRDVQALLMGGH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM-GT-SAWYAPGAA  230 (314)
T ss_dssp             HHHHHHTCCGGGEEEEEEESS-GGGEEEEEEEEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SS-CCCHHHHHH
T ss_pred             HHHHHhCcCHHHeEEEEECCC-CCcEEeeeecCeECcEehhhccCHHHHHHHHHHHHHhHHHHHhcc-CC-cHHHHHHHH
Confidence            999999999999999999999 579999999998763     2567789999999999999999986 55 999999999


Q ss_pred             HHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263          259 GAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       259 ~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                      +++++++|++|   ++.|+||| +++|+| .+++|||+||++|+
T Consensus       231 ~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~~~~s~P~~lg~  271 (314)
T 3nep_X          231 AAEMTEAILKD---NKRILPCAAYCDGEYGLDDLFIGVPVKLGA  271 (314)
T ss_dssp             HHHHHHHHHHT---CCEEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             HHHHHHHHHcC---CCeEEEEEEEeccccCCCceEEEEEEEEeC
Confidence            99999999997   67899998 789998 47899999999985

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=2.6e-60  Score=442.23  Aligned_cols=260  Identities=26%  Similarity=0.365  Sum_probs=213.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC-CcEEEEecCCccccccCCCCEEEE
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      +.++||+|||| |+||+++++.|+..++++||+|+|+++  ++|+++||+|+... ..++...  .+ +++++|||+||+
T Consensus         7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~--~~-~~a~~~aDiVvi   82 (326)
T 3vku_A            7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYS--AE-YSDAKDADLVVI   82 (326)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGTTCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEE--Cc-HHHhcCCCEEEE
Confidence            35689999996 999999999999999999999999975  58899999998631 2344432  23 488999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHH
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~  181 (300)
                      +||.|++|||+|.|++..|+++++++++.|+++||+++++++|||+|++|++    +++.++||++||+|+ |.||++|+
T Consensus        83 ~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvdi~t~~----~~k~~g~p~~rviG~gt~LD~~R~  158 (326)
T 3vku_A           83 TAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYA----TWKLSGFPKNRVVGSGTSLDTARF  158 (326)
T ss_dssp             CCCCC----------------CHHHHHHHHHTTTCCSEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHHHH
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchHHHHHH----HHHhcCCCHHHeeeecccCcHHHH
Confidence            9999999999999999999999999999999999999999999999965554    334445999999999 99999999


Q ss_pred             HHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-C----------CCHHHHHHHHHHHhchhhhhhhhccCCCC
Q 022263          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----------LADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (300)
Q Consensus       182 ~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-~----------~~~~~~~~i~~~v~~~g~~i~~~~~gkg~  250 (300)
                      ++++|+++|+++++|++|||||| |+|+||+||++++.+ +          ++++++++|.++++++|++|++.   ||+
T Consensus       159 ~~~la~~lgv~~~~V~~~ViGeH-Gdt~vp~~S~a~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---kG~  234 (326)
T 3vku_A          159 RQSIAKMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKL---KGA  234 (326)
T ss_dssp             HHHHHHHHTSCGGGEECCEEBSS-STTCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHH---HSC
T ss_pred             HHHHHHHhCCCHHHCeEEEEcCC-CCeeEEeeeccccCCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhc---CCC
Confidence            99999999999999999999999 689999999998764 1          15566899999999999999984   689


Q ss_pred             CccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       251 t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      |+||+|.|+++++++|++|   ++.|+||| |++|+|+ +++|||+||++|+
T Consensus       235 t~~a~a~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~v~~s~P~~lg~  283 (326)
T 3vku_A          235 TFYGIATALARISKAILND---ENAVLPLSVYMDGQYGLNDIYIGTPAVINR  283 (326)
T ss_dssp             CCHHHHHHHHHHHHHHHTT---CCEEEEEEEEEEEGGGEEEEEEEEEEEEET
T ss_pred             chHHHHHHHHHHHHHHhcC---CCceEEEEeeccCccCCCceEEEEEEEEcC
Confidence            9999999999999999997   67899987 7999994 6899999999985

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=100.00  E-value=1.6e-59  Score=435.48  Aligned_cols=258  Identities=33%  Similarity=0.517  Sum_probs=231.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC--C--cccHHHHhcccc----CCCcEEEEecCCccccccCCCCE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--N--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDV   99 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~--~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~~a~~~aDi   99 (300)
                      ++||+|||| |.+|+++++.|++.++ ++|+|+|++  +  .+|.++|+.|..    ....+..   ++|+ ++++|||+
T Consensus         8 ~~kv~ViGa-G~vG~~ia~~l~~~g~-~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aDv   81 (315)
T 3tl2_A            8 RKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG---TSDY-ADTADSDV   81 (315)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE---cCCH-HHhCCCCE
Confidence            469999996 9999999999999998 899999998  3  478899999874    2234443   3454 78999999


Q ss_pred             EEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhH
Q 022263          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDV  178 (300)
Q Consensus       100 VIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds  178 (300)
                      ||+++|.|++|||+|.|++.+|+++++++++.+.++||+++++++|||+|++|+++   ++.++ +|++||+|+ |.||+
T Consensus        82 VIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd~~t~~~---~k~sg-~p~~rviG~gt~LD~  157 (315)
T 3tl2_A           82 VVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDAMTYSV---FKEAG-FPKERVIGQSGVLDT  157 (315)
T ss_dssp             EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEECCHHHHH
T ss_pred             EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHHHHHHHH---HHhcC-CChHHEEeeccCcHH
Confidence            99999999999999999999999999999999999999999999999999877764   45555 999999999 89999


Q ss_pred             HHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-----CCCHHHHHHHHHHHhchhhhhhhhccCCCCCcc
Q 022263          179 VRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----NLADEDIKALTKRTQDGGTEVVEAKAGKGSATL  253 (300)
Q Consensus       179 ~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-----~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~  253 (300)
                      +|+++++|+++|+++++|+++||||| |+|+||+||++++.+     .++++++++|.++++++|++|++++ |||+|+|
T Consensus       158 ~R~~~~la~~lgv~~~~v~~~viG~H-g~t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eii~~~-~kgst~~  235 (315)
T 3tl2_A          158 ARFRTFIAQELNLSVKDITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVGLL-GNGSAYY  235 (315)
T ss_dssp             HHHHHHHHHHHTCCGGGEECCEEBCS-GGGCEECGGGCEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSSCCCH
T ss_pred             HHHHHHHHHHhCcCHHHceeeEecCC-CCcceeecccCeECCEEHHHhCCHHHHHHHHHHHHHHHHHHHHhc-CCCcchH
Confidence            99999999999999999999999999 579999999998764     2677889999999999999999974 7999999


Q ss_pred             chHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          254 SMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       254 ~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      |+|.|+++++++|++|   ++.++||| |++|+|+ +++|||+||++|+
T Consensus       236 a~a~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~~~~s~P~~~g~  281 (315)
T 3tl2_A          236 APAASLVEMTEAILKD---QRRVLPAIAYLEGEYGYSDLYLGVPVILGG  281 (315)
T ss_dssp             HHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             HHHHHHHHHHHHHHcC---CCcEEEEEEeccCccCCCceEEEEEEEEeC
Confidence            9999999999999997   67899998 7899994 6899999999985

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=100.00  E-value=2.1e-59  Score=430.94  Aligned_cols=253  Identities=27%  Similarity=0.362  Sum_probs=224.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhcccc--CCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~--~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      |||+|||| |.+|+++++.|+..+++++|+|+|+++  .+++++|++|..  ++...+.. +++| +++++|||+||+++
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~-~t~d-~~a~~~aDiVViaa   77 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIV-GGAD-YSLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEE-EESC-GGGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEE-EeCC-HHHhCCCCEEEECC
Confidence            79999996 999999999999999989999999976  467899999976  22222222 2346 68999999999999


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHH
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~  183 (300)
                      |.|++||++|.|++.+|++++++++++|+++||+++++++|||+|++|++    +++.++||++||||+ |.||++|+++
T Consensus        78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd~~t~~----~~k~~g~p~~rviG~gt~LD~~R~~~  153 (294)
T 1oju_A           78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYI----MWKESGKPRNEVFGMGNQLDSQRLKE  153 (294)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHH----HHHHSCCCTTSEEECSHHHHHHHHHH
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcchHHHHH----HHHhcCCCHHHEeecccccHHHHHHH
Confidence            99999999999999999999999999999999999999999999976554    334455999999999 7999999999


Q ss_pred             HHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHHHHHH
Q 022263          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFA  263 (300)
Q Consensus       184 ~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i  263 (300)
                      ++| ++|++|++ +++||||| |+|+||+||++++.+.-   ++++|.++++++|++|++.   ||+|+||+|.|+++++
T Consensus       154 ~la-~l~v~~~~-~~~V~G~H-g~t~vp~~s~~~v~g~~---~~~~~~~~v~~~g~eii~~---kG~t~~~~a~a~~~~~  224 (294)
T 1oju_A          154 RLY-NAGARNIR-RAWIIGEH-GDSMFVAKSLADFDGEV---DWEAVENDVRFVAAEVIKR---KGATIFGPAVAIYRMV  224 (294)
T ss_dssp             HHH-HTTCBSCC-CCCEEBCS-STTCEECGGGCCCBSCC---CHHHHHHHHHTTHHHHHHH---HSSCCHHHHHHHHHHH
T ss_pred             HHH-HhCCCccC-ceEEEecC-CCceeeecccceECCcC---hHHHHHHHHHHHHHHHHHh---cCCcchHHHHHHHHHH
Confidence            999 99999999 99999999 68999999999876422   6889999999999999995   5799999999999999


Q ss_pred             HHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263          264 DACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       264 ~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                      ++|++|   ++.|+||| |++|+| .+++|||+||++|+
T Consensus       225 ~ail~~---~~~v~~~s~~~~g~yg~~~~~~s~P~~~g~  260 (294)
T 1oju_A          225 KAVVED---TGEIIPTSMILQGEYGIENVAVGVPAKLGK  260 (294)
T ss_dssp             HHHHTT---CCCEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             HHHHcC---CCeEEEEEecccccCCCCceEEEEEEEEeC
Confidence            999997   67899999 899999 35899999999985

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=1.7e-59  Score=439.53  Aligned_cols=262  Identities=27%  Similarity=0.403  Sum_probs=223.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC-CcEEEEecCCccccccCCCCEEEE
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      .+++||+||||+|+||+++++.++..++.+||+|+|+++  .+|+++||+|+.++ ..+..   ++|++++++|||+||+
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~---t~d~~~al~dADvVvi   82 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF---TSDIKEALTDAKYIVS   82 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE---ESCHHHHHTTEEEEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE---cCCHHHHhCCCCEEEE
Confidence            346799999966999999999999999888999999975  58899999998643 23443   3577789999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeE-EEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHH
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA  181 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~-viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~  181 (300)
                      +||.|++||++|.|++..|++++++++++|+++||+++ ++++|||+|++|+++   ++.++ +|++||+|+|.||++|+
T Consensus        83 taG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~~t~i~---~k~sg-~p~~rv~g~t~LDs~R~  158 (343)
T 3fi9_A           83 SGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVT---LIYSG-LKPSQVTTLAGLDSTRL  158 (343)
T ss_dssp             CCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHHHHHHH---HHHHT-CCGGGEEEECCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHHHHHHH---HHHcC-CCcceEEEecCcHHHHH
Confidence            99999999999999999999999999999999999996 899999999887764   56666 99999999999999999


Q ss_pred             HHHHHHHcCCCCCceE-EEEEecCCCCceeeccCcCcCCC----------CCCHHHHHHHHHHHhchhhhhhhhccCCCC
Q 022263          182 KTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (300)
Q Consensus       182 ~~~la~~l~v~~~~V~-~~v~G~h~g~t~vp~~S~~~~~~----------~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~  250 (300)
                      ++++|+++|++|++|+ ++||||| |+|+||+||++++++          .+++++|++|.++++++|++|++.| | ++
T Consensus       159 ~~~la~~l~v~~~~v~~~~ViGeH-gds~vp~~S~a~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g-~s  235 (343)
T 3fi9_A          159 QSELAKHFGIKQSLVTNTRTYGGH-GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR-G-RS  235 (343)
T ss_dssp             HHHHHHHHTSCGGGEECCCEEESS-GGGEEECGGGCEETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHHH-S-SC
T ss_pred             HHHHHHHhCcCHHHcccceEEEcC-CCceeeeeecceECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHcc-C-CC
Confidence            9999999999999997 8999999 579999999998753          1467789999999999999999975 2 24


Q ss_pred             CccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCCCcCEEEEeEEecC
Q 022263          251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVTELPFFASKRAWKN  300 (300)
Q Consensus       251 t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~~~~~~S~Pv~lg~  300 (300)
                      ++||+|.|+++++++|++|   ++.++|+| |+++++.+++|||+||++|+
T Consensus       236 s~~s~A~a~~~~~~ail~d---~~~v~~~s~~~~g~~~~~v~~s~P~~lg~  283 (343)
T 3fi9_A          236 SFQSPSYVSIEMIRAAMGG---EAFRWPAGCYVNVPGFEHIMMAMETTITK  283 (343)
T ss_dssp             CCHHHHHHHHHHHHHHTTS---SCCCSCEEEEEEETTEEEEEEEESEEEET
T ss_pred             cHHhHHHHHHHHHHHHHhC---CCceEEEEEEEeCCCcCceEEEeEEEEeC
Confidence            4569999999999999997   45687766 88988777899999999985

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=100.00  E-value=1.8e-58  Score=429.71  Aligned_cols=259  Identities=36%  Similarity=0.559  Sum_probs=230.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccC----CCcEEEEecCCccccccCCCCEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVV  100 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~----~~~v~~~~~t~d~~~a~~~aDiV  100 (300)
                      +++||+|||| |.+|+++++.|+..++. +|+|+|+++  .+++++||+|...    +..+..   ++|+ ++++|||+|
T Consensus         4 ~~~kI~iiGa-G~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~---t~d~-~a~~~aDvV   77 (321)
T 3p7m_A            4 ARKKITLVGA-GNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG---TNDY-KDLENSDVV   77 (321)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESCG-GGGTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEE---cCCH-HHHCCCCEE
Confidence            4579999995 99999999999999987 999999976  4688999999752    233443   3454 799999999


Q ss_pred             EEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-ehhHH
Q 022263          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVV  179 (300)
Q Consensus       101 Ii~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t-~Lds~  179 (300)
                      |+++|.|++||++|.|++.+|++++++++++|+++||+++++++|||+|++|+++   ++.+ ++|++||+|+| .||++
T Consensus        78 Ii~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~---~k~s-g~p~~rviG~~~~LD~~  153 (321)
T 3p7m_A           78 IVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDIMVNML---QKFS-GVPDNKIVGMAGVLDSA  153 (321)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHH-CCCGGGEEEECHHHHHH
T ss_pred             EEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHH---HHhc-CCCHHHEEeeccchHHH
Confidence            9999999999999999999999999999999999999999999999999766543   3444 59999999997 99999


Q ss_pred             HHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----------CCCHHHHHHHHHHHhchhhhhhhhccCCC
Q 022263          180 RAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEAKAGKG  249 (300)
Q Consensus       180 R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----------~~~~~~~~~i~~~v~~~g~~i~~~~~gkg  249 (300)
                      |+++++|+++|++|++|+++||||| |+|+||+||++++.+          .+++++++++.++++++|++|+++| |||
T Consensus       154 R~~~~la~~l~v~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-g~g  231 (321)
T 3p7m_A          154 RFRTFLADELNVSVQQVQAYVMGGH-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTG  231 (321)
T ss_dssp             HHHHHHHHHHTCCGGGEECCEEECS-GGGEEECTTTCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             HHHHHHHHHhCcCHHHceEeeecCc-CCceeeeeeeceECCEehhhhccccCCCHHHHHHHHHHHHhhhHHHHHhc-CCC
Confidence            9999999999999999999999999 689999999998753          1367778999999999999999987 899


Q ss_pred             CCccchHHHHHHHHHHHHccCCCCCCceeee-eee-CCC--CCcCEEEEeEEecC
Q 022263          250 SATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQ-STV--TELPFFASKRAWKN  300 (300)
Q Consensus       250 ~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~-~~~--~~~~~~S~Pv~lg~  300 (300)
                      +|+||+|.|+++++++|++|   ++.++||| +++ |+|  ++++|||+||++|+
T Consensus       232 sa~~~~a~a~~~~~~ail~~---~~~v~~~s~~~~~g~ygi~~~v~~s~P~~~g~  283 (321)
T 3p7m_A          232 SAYYAPAAAGIQMAESFLKD---KKMILPCAAKVKAGMYGLDEDLFVGVPTEISA  283 (321)
T ss_dssp             CCCHHHHHHHHHHHHHHHTT---CCEEEEEEEEECTTGGGCSSCEEEEEEEEEET
T ss_pred             ChHHHHHHHHHHHHHHHHcC---CCcEEEEEEEccCcccCCCCCeEEEEEEEEcC
Confidence            99999999999999999997   57899999 678 788  45999999999985

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=100.00  E-value=1.7e-58  Score=431.03  Aligned_cols=274  Identities=68%  Similarity=1.061  Sum_probs=247.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      ++|||+||||+|+||++++..|+.++++.||+|+|+++.++.++||.|...+..+..+.+++|++++++|||+||+++|.
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~   86 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV   86 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence            56899999977999999999999888777999999977778889999865543555544456788899999999999999


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHHHHHH
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA  186 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~~~la  186 (300)
                      |+++|++|.|++..|+++++++++++++++|+++++++|||+|++|+++++++++.++||++||+|+|.||+.|+++++|
T Consensus        87 ~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~t~~~~~~~~~p~~rviG~~~Ld~~r~~~~la  166 (326)
T 1smk_A           87 PRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVA  166 (326)
T ss_dssp             CCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHHHHTCCCTTSEEECCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCchHHHHHHHHHHHHHccCCCcccEEEEeehHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988887779999999999999999999999


Q ss_pred             HHcCCCCCceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHHHHHHHHH
Q 022263          187 GKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC  266 (300)
Q Consensus       187 ~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i~ai  266 (300)
                      +++|++|++|+++|||||+|++++|+||++++..++++++++++.++++++|++|++.|.|||+++||+|.|+++++++|
T Consensus       167 ~~l~v~~~~v~~~v~G~H~G~~~~p~~s~~~v~~~~~~~~~~~~~~~v~~~g~eii~~k~~~gs~~~~~a~a~~~~~~ai  246 (326)
T 1smk_A          167 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC  246 (326)
T ss_dssp             HHHTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHHHH
T ss_pred             HHhCcChhheEEEEecccCCceEEEecccCeecCcCCHHHHHHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999977899999999988766888889999999999999999986678999999999999999999


Q ss_pred             HccCCCCCCceeeeeeeCCCCCcCEEEEeEEecC
Q 022263          267 LKGLNGVPDVVECSFVQSTVTELPFFASKRAWKN  300 (300)
Q Consensus       267 ~~~~~~~~~v~~~s~v~~~~~~~~~~S~Pv~lg~  300 (300)
                      +..+++++.+++|++++|++++++|||+||++|+
T Consensus       247 ~~~~~~~~~v~~~~~~~g~~~~~~~~~vP~~ig~  280 (326)
T 1smk_A          247 LRGLRGDAGVIECAFVSSQVTELPFFASKVRLGR  280 (326)
T ss_dssp             HHHHHTCSCEEEEEEEECCSSSSSEEEEEEEEET
T ss_pred             HHHhCCCCeEEEEEeeccccCCceEEEEEEEEeC
Confidence            3333346789999988998888999999999984

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=100.00  E-value=2.8e-59  Score=435.67  Aligned_cols=259  Identities=23%  Similarity=0.331  Sum_probs=229.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC--CcEEEEecCCccccccCCCCEEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      +++||+|||| |+||+++++.|+..+++++|+|+|+++  .+++++||+|....  ..++.+.  ++ +++++|||+||+
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~--~~-~~a~~~aDvVvi   79 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY--GT-YEDCKDADIVCI   79 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEE--EC-GGGGTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEe--Cc-HHHhCCCCEEEE
Confidence            4689999996 999999999999999989999999975  57899999998321  2344442  34 478999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHH
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~  181 (300)
                      ++|.|++||++|.|++..|+++++++++.|+++||+++++++|||+|++|+++   ++.+ +||++||||+ |.||++|+
T Consensus        80 ~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd~~t~~~---~k~~-g~p~~rviG~gt~LD~~R~  155 (326)
T 3pqe_A           80 CAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDILTYAT---WKFS-GLPKERVIGSGTTLDSARF  155 (326)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH---HHHH-CCCGGGEEECTTHHHHHHH
T ss_pred             ecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHHHHHHHH---HHhc-CCCHHHEEeeccccHHHHH
Confidence            99999999999999999999999999999999999999999999999766543   3444 4999999999 99999999


Q ss_pred             HHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----C-------CCHHHHHHHHHHHhchhhhhhhhccCCCC
Q 022263          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----N-------LADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (300)
Q Consensus       182 ~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----~-------~~~~~~~~i~~~v~~~g~~i~~~~~gkg~  250 (300)
                      ++++|+++|+++++|++|||||| |+|+||+||++++.+    +       ++++++++|.++++++|++|++.   ||+
T Consensus       156 ~~~la~~lgv~~~~V~~~V~GeH-G~t~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---kG~  231 (326)
T 3pqe_A          156 RFMLSEYFGAAPQNVCAHIIGEH-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEK---KGA  231 (326)
T ss_dssp             HHHHHHHHTCCGGGEECCEEBSS-STTCEECGGGCEETTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHH---HSC
T ss_pred             HHHHHHHhCCCHHHceeeeeecC-CCceeeeeeeeeECCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheeeeC---CCC
Confidence            99999999999999999999999 689999999998763    1       15667899999999999999984   689


Q ss_pred             CccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263          251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       251 t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                      |+||+|.|+++++++|++|   ++.|+||| |++|+| .+++|||+||++|+
T Consensus       232 t~~a~a~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~v~~s~P~~lg~  280 (326)
T 3pqe_A          232 TYYGVAMSLARITKAILHN---ENSILTVSTYLDGQYGADDVYIGVPAVVNR  280 (326)
T ss_dssp             CCHHHHHHHHHHHHHHHTT---CCEEECCEEEEESGGGCEEEEEECCEEEET
T ss_pred             cHHHHHHHHHHHHHHHhcC---CCcEEEEEEeeccccCCCceEEEEEEEEcC
Confidence            9999999999999999997   67899987 799999 36899999999985

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=100.00  E-value=1.2e-58  Score=430.97  Aligned_cols=261  Identities=33%  Similarity=0.507  Sum_probs=226.6

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccC----CCcEEEEecCCccccccCCCC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSD   98 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~----~~~v~~~~~t~d~~~a~~~aD   98 (300)
                      ..+++||+|||| |++|+++++.|+..++. ||+|+|+++  .+++++||+|...    +..+..   ++|+ ++++|||
T Consensus         4 ~m~~~kI~viGa-G~vG~~~a~~l~~~~~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~---t~d~-~a~~~aD   77 (324)
T 3gvi_A            4 SMARNKIALIGS-GMIGGTLAHLAGLKELG-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG---ANDY-AAIEGAD   77 (324)
T ss_dssp             --CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESSG-GGGTTCS
T ss_pred             CCcCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE---eCCH-HHHCCCC
Confidence            345689999996 99999999999999986 999999976  4678999999752    334443   3566 8999999


Q ss_pred             EEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-ehh
Q 022263           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLD  177 (300)
Q Consensus        99 iVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t-~Ld  177 (300)
                      +||+++|.|++||++|.|++.+|++++++++++|+++||+++++++|||+|++|+++   ++.+ ++|++||+|+| .||
T Consensus        78 iVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~~---~k~s-g~p~~rviG~~~~LD  153 (324)
T 3gvi_A           78 VVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWAL---QKFS-GLPAHKVVGMAGVLD  153 (324)
T ss_dssp             EEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHH-CCCGGGEEECCHHHH
T ss_pred             EEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHHHHH---HHhc-CCCHHHEEeecCccH
Confidence            999999999999999999999999999999999999999999999999999776653   3444 59999999997 899


Q ss_pred             HHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----------CCCHHHHHHHHHHHhchhhhhhhhccC
Q 022263          178 VVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEAKAG  247 (300)
Q Consensus       178 s~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----------~~~~~~~~~i~~~v~~~g~~i~~~~~g  247 (300)
                      ++|+++++|+++|+++++|+++||||| |+|+||+||++++.+          .+++++++++.++++++|++|+++| |
T Consensus       154 ~~R~~~~la~~lgv~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-g  231 (324)
T 3gvi_A          154 SARFRYFLSEEFNVSVEDVTVFVLGGH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-K  231 (324)
T ss_dssp             HHHHHHHHHHHHTCCGGGEECCEEECS-GGGEEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-S
T ss_pred             HHHHHHHHHHHhCcCHHHCeEEEEcCC-CCceeeehhhCeECCEEHHHhhhccCCCHHHHHHHHHHHHHhHHHHHHhc-C
Confidence            999999999999999999999999999 689999999998753          1366778999999999999999987 8


Q ss_pred             CCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          248 KGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       248 kg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      ||+|+||+|.|+++++++|++|   ++.|+||| +++|+|+ +++|||+||++|+
T Consensus       232 kgsa~~~~a~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~v~~s~P~~~g~  283 (324)
T 3gvi_A          232 TGSAFYAPAASAIQMAESYLKD---KKRVLPVAAQLSGQYGVKDMYVGVPTVIGA  283 (324)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             CCcHHHHHHHHHHHHHHHHHcC---CCcEEEEEEEecCccCCCceEEEEEEEEeC
Confidence            9999999999999999999997   57899999 7899993 5899999999985

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=100.00  E-value=2e-58  Score=432.11  Aligned_cols=275  Identities=27%  Similarity=0.321  Sum_probs=222.9

Q ss_pred             cccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecCC----cccHHHHhccccCCCcEEEEecCC
Q 022263           18 ARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTRSEVAGYMGND   88 (300)
Q Consensus        18 ~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~   88 (300)
                      .+.+.+...++.||+|+||+|+||++++++|+++++++     ||+|+|+++    .+|.++||+|+.++.....+. ++
T Consensus        14 ~~~~~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~-~~   92 (345)
T 4h7p_A           14 AQTQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVV-TA   92 (345)
T ss_dssp             --------CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEE-ES
T ss_pred             ccccCCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEE-cC
Confidence            45667777778899999988999999999999988875     999999975    368899999998775555544 34


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022263           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (300)
Q Consensus        89 d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~  167 (300)
                      |.+++++|||+||++||.||||||+|+||+..|++|++++++.|.++| |+++++++|||+|+|+|++   +++..++|+
T Consensus        93 ~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~---~~~~~g~~~  169 (345)
T 4h7p_A           93 DPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALIL---LKSAQGKLN  169 (345)
T ss_dssp             CHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHHTTTCSC
T ss_pred             ChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHH---HHHccCCCC
Confidence            667999999999999999999999999999999999999999999997 7999999999999888764   455534555


Q ss_pred             -CcEEEeeehhHHHHHHHHHHHcCCCCCceE-EEEEecCCCCceeeccCcCcCCC-----CCCHHHH-HHHHHHHhchhh
Q 022263          168 -KKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA-----NLADEDI-KALTKRTQDGGT  239 (300)
Q Consensus       168 -~kviG~t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h~g~t~vp~~S~~~~~~-----~~~~~~~-~~i~~~v~~~g~  239 (300)
                       ++|.++|.||++|++++||+++|++|++|+ .+||||| |+|+||+||+++++.     .++++++ +++.++++++|+
T Consensus       170 ~r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~H-G~t~vp~~s~a~v~g~~~~~~~~~~~~~~~~~~~v~~~g~  248 (345)
T 4h7p_A          170 PRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNH-SSTQVPDTDSAVIGTTPAREAIKDDALDDDFVQVVRGRGA  248 (345)
T ss_dssp             GGGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCS-STTCEEECTTCEETTEEGGGGCCC------HHHHHHHHHH
T ss_pred             cceeeeccchhHHHHHHHHHHHHCcChhheecceeecCC-CCeEEeeeccceECCccHHHhcchhhHHHHHHHHHHhhhh
Confidence             455566999999999999999999999997 5689999 579999999998764     2344444 579999999999


Q ss_pred             hhhhhccCCCCCccchHHHHHHHHHHHHccCCCCCCceeeee-e-eCCC--CCcCEEEEeEEecC
Q 022263          240 EVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-V-QSTV--TELPFFASKRAWKN  300 (300)
Q Consensus       240 ~i~~~~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s~-v-~~~~--~~~~~~S~Pv~lg~  300 (300)
                      +|+++|  +++++||+|.|+++++++|++|.+.. .+++++. . +|+|  ++++|||+||++|+
T Consensus       249 eIi~~k--g~ss~~s~a~a~~~~~~~~l~~~~~~-~~vs~~v~s~~g~YGi~~~v~~s~Pv~~~~  310 (345)
T 4h7p_A          249 EIIQLR--GLSSAMSAAKAAVDHVHDWIHGTPEG-VYVSMGVYSDENPYGVPSGLIFSFPCTCHA  310 (345)
T ss_dssp             HHHHHH--SSCCCHHHHHHHHHHHHHHHHCCCTT-CCEEEEEECTTCTTCCCSSCEEEEEEEEET
T ss_pred             hhhhcC--CCcchhhHHHHHHHHHHHHhcCCCCc-eEEEEEEEeCCCCcCCCCCEEEEEEEEEeC
Confidence            999986  46789999999999999999986532 3344443 2 5788  58999999999974

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=100.00  E-value=3.7e-57  Score=426.28  Aligned_cols=261  Identities=26%  Similarity=0.266  Sum_probs=214.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCE---EEEEecC--C----cccHHHHhccccCCC--cEEEEecCCcccccc
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSR---LALYDIA--N----TPGVAADVGHINTRS--EVAGYMGNDQLGQAL   94 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~e---l~L~D~~--~----~~g~~~dl~~~~~~~--~v~~~~~t~d~~~a~   94 (300)
                      ++++||+||||+|+||+++++.|+.+++++|   |.|+|.+  .    ++|++|||+|+.++.  .++..  + +.++++
T Consensus        30 ~~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~--~-~~y~~~  106 (375)
T 7mdh_A           30 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG--I-DPYEVF  106 (375)
T ss_dssp             CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE--S-CHHHHT
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEe--c-CCHHHh
Confidence            3568999999779999999999999999887   7776653  3    488999999997542  33332  3 446899


Q ss_pred             CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      +|||+||++||.||+|||+|+||+..|++|++++++.|.++ +|+++++++|||+|+|||++   ++.++ ++++|+||+
T Consensus       107 ~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia---~k~sg-~~~~rvig~  182 (375)
T 7mdh_A          107 EDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC---LKNAP-DIPAKNFHA  182 (375)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCT-TSCGGGEEE
T ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH---HHHcC-CCCccEEEe
Confidence            99999999999999999999999999999999999999998 79999999999999877763   56666 455566776


Q ss_pred             -eehhHHHHHHHHHHHcCCCCCceEE-EEEecCCCCceeeccCcCcCCC----CC--CHHH-HHHHHHHHhchhhhhhhh
Q 022263          174 -TTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKA----NL--ADED-IKALTKRTQDGGTEVVEA  244 (300)
Q Consensus       174 -t~Lds~R~~~~la~~l~v~~~~V~~-~v~G~h~g~t~vp~~S~~~~~~----~~--~~~~-~~~i~~~v~~~g~~i~~~  244 (300)
                       |.||++||+++||+++|++|++|+. +||||| |+|+||+||++++++    ++  ++++ .++|.++++++|++|++.
T Consensus       183 gT~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeH-gdt~vp~~S~a~V~G~pl~~~~~~~~~~~~~i~~~v~~~g~eII~~  261 (375)
T 7mdh_A          183 LTRLDENRAKCQLALKAGVFYDKVSNVTIWGNH-STTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQK  261 (375)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCGGGEECCEEEBCS-STTCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             eehHHHHHHHHHHHHHhCcChhhcccceEEecC-CCceeeeeecccCCCEEhhHhccchhhHHHHHHHHHHHHHHHHHHh
Confidence             8999999999999999999999985 899999 589999999998764    22  2233 378999999999999996


Q ss_pred             ccCCCCCccchHHHHHHHHHHH---HccCCCCCCceeee-eeeC-CC--CCcCEEEEeEEecC
Q 022263          245 KAGKGSATLSMAYAGAIFADAC---LKGLNGVPDVVECS-FVQS-TV--TELPFFASKRAWKN  300 (300)
Q Consensus       245 ~~gkg~t~~~~A~a~~~~i~ai---~~~~~~~~~v~~~s-~v~~-~~--~~~~~~S~Pv~lg~  300 (300)
                         ||+|+|  |.++++++++|   +++. +++.|+||| +++| +|  ++++|||+||++|+
T Consensus       262 ---kG~ts~--a~aa~~i~~~i~~~l~g~-d~~~v~~vs~~~~G~~YGi~~dv~~s~P~vlg~  318 (375)
T 7mdh_A          262 ---WGRSSA--ASTAVSIADAIKSLVTPT-PEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKG  318 (375)
T ss_dssp             ---TSSCCH--HHHHHHHHHHHHHHHSCC-CTTCCEEEEEECTTCSSCCCSSSEEEEEEECCS
T ss_pred             ---cCCCch--HHHHHHHHHHHHHHhcCC-CCCeEEEEEEEeCCccCCCCCceEEEEEEEEcC
Confidence               466666  44455555555   5432 367899999 6899 68  47999999999984

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=100.00  E-value=8.6e-58  Score=424.94  Aligned_cols=250  Identities=21%  Similarity=0.276  Sum_probs=221.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccC-CCcEEEEecCCccccccCCCCEEEEc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      +.+||+|||| |.||+++++.|+..++++||+|+|+++  .+|+++||+|... ....+.. .++|+ ++++|||+||++
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~-~t~d~-~~~~daDiVIit   96 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIV-SGKDY-SVSAGSKLVVIT   96 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEE-EESSS-CSCSSCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEE-EcCCH-HHhCCCCEEEEe
Confidence            5679999996 999999999999999999999999975  5889999999742 2122222 24576 569999999999


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHH
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~  182 (300)
                      ||.|++|||+|+|++.+|+++++++++++.++||+++++++|||+|++|+++   ++.++ ||++|+||+ |.||++|++
T Consensus        97 aG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPvdi~t~~~---~k~sg-~p~~rViG~gt~LDs~R~~  172 (330)
T 3ldh_A           97 AGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGTDKNKQD---WKLSG-LPMHRIIGSGCNLDSARFR  172 (330)
T ss_dssp             CSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHC-CCGGGEECCTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCccHHHHHHH---HHHhC-CCHHHeecccCchhHHHHH
Confidence            9999999999999999999999999999999999999999999999776653   45555 999999999 699999999


Q ss_pred             HHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHH-----
Q 022263          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY-----  257 (300)
Q Consensus       183 ~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~-----  257 (300)
                      +++|+++|++|++|+++||||| |+|+||+||+     .+    .+++.++++++|++|++.   ||+|+||+|.     
T Consensus       173 ~~lA~~lgv~~~~V~~~V~G~H-g~t~vp~~S~-----~~----~~~~~~~v~~~g~eii~~---kg~t~~a~a~~~~~~  239 (330)
T 3ldh_A          173 YLMGERLGVHSCLVIGWVIGQH-GDSVPSVWSG-----MW----DAKLHKDVVDSAYEVIKL---KGYTSWAIGLVVSNP  239 (330)
T ss_dssp             HHHHHHHTSCTTTCCEEECSSS-STTCCEEEEE-----EE----ETTEEHHHHHCCCTTSTT---CHHHHHHHHHTTHHH
T ss_pred             HHHHHHhCCCHHHeEEEEEcCC-CCceeeechh-----hH----HHHHHHHHHHHHHHHHHc---cCCcceeeeeeccCc
Confidence            9999999999999999999999 6799999998     11    267889999999999984   6899999999     


Q ss_pred             ------------HHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEec
Q 022263          258 ------------AGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWK  299 (300)
Q Consensus       258 ------------a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg  299 (300)
                                  |+++++++|++|   ++.|+||| +++|+|  ++++|||+||++|
T Consensus       240 ~~~~~~~~~~~~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~~v~~s~P~~lg  293 (330)
T 3ldh_A          240 VDVLTYVAWKGCSVADLAQTIMKD---LCRVHPVSTMVKDFYGIKDNVFLSLPCVLN  293 (330)
T ss_dssp             HTTSSSCSCTHHHHHHHHHHHHHT---CCEEECCBCCCSSSSSCCSCCCCBCCEEEB
T ss_pred             cchhhhhhhHHHHHHHHHHHHHcC---CCceEEEEeecCCccCCCCceEEEEEEEEC
Confidence                        999999999997   67899999 789999  3599999999997

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=100.00  E-value=1.3e-56  Score=418.84  Aligned_cols=264  Identities=26%  Similarity=0.298  Sum_probs=222.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCE-----EEEEecCC----cccHHHHhccccCCCcEEEEecCCccccccCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSR-----LALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~e-----l~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~a   97 (300)
                      +++||+|+||+|+||+++++.|+.+++++|     |+|+|+++    .+|+++||+|+.++. +..+..+++.+++++||
T Consensus         2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~-~~~~~~~~~~~~~~~da   80 (333)
T 5mdh_A            2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL-LKDVIATDKEEIAFKDL   80 (333)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-EEEEEEESCHHHHTTTC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcc-cCCEEEcCCcHHHhCCC
Confidence            578999999889999999999999999888     99999964    479999999976442 23333344566899999


Q ss_pred             CEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCe-EEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeh
Q 022263           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA-IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL  176 (300)
Q Consensus        98 DiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a-~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~L  176 (300)
                      |+||++||.|++|||+|.|++..|+++++++++.+++++|++ +++++|||+|+||+++   ++.++.+|+++|.+.|.|
T Consensus        81 DvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~---~~~~~~~p~~~ig~~t~L  157 (333)
T 5mdh_A           81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA---SKSAPSIPKENFSCLTRL  157 (333)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEECCHH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHH---HHHcCCCCcCEEEEEEhH
Confidence            999999999999999999999999999999999999999987 6999999999777663   345554666653344999


Q ss_pred             hHHHHHHHHHHHcCCCCCceEEE-EEecCCCCceeeccCcCcC--CC-CC-------CHHH-HHHHHHHHhchhhhhhhh
Q 022263          177 DVVRAKTFYAGKANVNVAEVNVP-VVGGHAGITILPLFSQATP--KA-NL-------ADED-IKALTKRTQDGGTEVVEA  244 (300)
Q Consensus       177 ds~R~~~~la~~l~v~~~~V~~~-v~G~h~g~t~vp~~S~~~~--~~-~~-------~~~~-~~~i~~~v~~~g~~i~~~  244 (300)
                      |++|+++++|+++|++|++|+++ |||||| +|+||+||++++  .+ .+       ++++ .+++.++++++|++|+++
T Consensus       158 Ds~R~~~~la~~l~v~~~~v~~~vV~GeHg-ds~vp~~S~a~v~i~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~~  236 (333)
T 5mdh_A          158 DHNRAKAQIALKLGVTSDDVKNVIIWGNHS-STQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKA  236 (333)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEECCEEEBCSS-TTCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCHHHeeecEEEEcCC-CCEEEeeeccEeccCCeeccHHHhhccccccHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999987 599995 699999999975  22 12       1222 368999999999999997


Q ss_pred             ccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeC-CC--CCcCEEEEeEEe
Q 022263          245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQS-TV--TELPFFASKRAW  298 (300)
Q Consensus       245 ~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~-~~--~~~~~~S~Pv~l  298 (300)
                      |  |+++.|++|.++++++++|++|.+ ++.|+||| +++| +|  ++++|||+||++
T Consensus       237 k--~~ssa~~~a~~~~~~~~~il~~~~-~~~v~~~s~~~~G~~YGi~~~v~~s~P~~~  291 (333)
T 5mdh_A          237 R--KLSSAMSAAKAICDHVRDIWFGTP-EGEFVSMGIISDGNSYGVPDDLLYSFPVTI  291 (333)
T ss_dssp             H--SSCCCHHHHHHHHHHHHHHHHCCC-TTCCEEEEEECTTCSSSCCSSCEEEEEEEE
T ss_pred             c--CchHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEecCCcccCCCCCeEEEEEEEE
Confidence            5  467899999999999999999854 35799999 5788 88  479999999998

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=7.7e-56  Score=411.74  Aligned_cols=259  Identities=22%  Similarity=0.346  Sum_probs=217.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccC-CCcEEEEecCCccccccCCCCEEEEc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      +.+||+|||| |+||+++++.|+.+++++||+|+|+++  +++.++||.|... ...++...   +.+++++|||+||++
T Consensus         4 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~---~~~~a~~~aDvVii~   79 (318)
T 1ez4_A            4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS---GEYSDCKDADLVVIT   79 (318)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE---CCGGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE---CCHHHhCCCCEEEEC
Confidence            3479999996 999999999999999999999999975  5788999999852 12344332   235889999999999


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHH
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~  182 (300)
                      +|.|++||++|.|++.+|+++++++++.|+++||++|++++|||+|++|++    +++.+++|++||||+ |.||++|++
T Consensus        80 ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~----~~k~s~~p~~rviG~gt~LD~~R~~  155 (318)
T 1ez4_A           80 AGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYA----TWKFSGFPKERVIGSGTSLDSSRLR  155 (318)
T ss_dssp             CCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHH----HHHHcCCCHHHEEeccccchHHHHH
Confidence            999999999999999999999999999999999999999999999965543    434445999999999 999999999


Q ss_pred             HHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----------CCCHHHHHHHHHHHhchhhhhhhhccCCCCCc
Q 022263          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (300)
Q Consensus       183 ~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----------~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~  252 (300)
                      +++|+++|+++++|+++||||| |+|++|+||++++.+          .++++.++++.++++++|++|++   +||+++
T Consensus       156 ~~la~~lgv~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~t~  231 (318)
T 1ez4_A          156 VALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN---LKGATF  231 (318)
T ss_dssp             HHHHHHHTCCGGGEECCEESSS-SSSCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH---HHSCCC
T ss_pred             HHHHHHhCcChhHEEEEEeccc-CCceEEEehhhcCCCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhhee---CCCcch
Confidence            9999999999999999999999 689999999998653          15666789999999999999998   468999


Q ss_pred             cchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          253 LSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       253 ~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      |++|.|+++++++|++|   ++.+++++ +++|+|. .++|||+||++|+
T Consensus       232 ~~~a~a~~~~~~ai~~~---~~~~~~vs~~~~G~yg~~~~~~~vP~~ig~  278 (318)
T 1ez4_A          232 YGIGTALMRISKAILRD---ENAVLPVGAYMDGQYGLNDIYIGTPAIIGG  278 (318)
T ss_dssp             HHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHhC---CCcEEEEEEeecCccCCCceEEEEEEEEeC
Confidence            99999999999999997   56789988 6899882 3899999999985

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=1.8e-55  Score=410.52  Aligned_cols=259  Identities=26%  Similarity=0.372  Sum_probs=221.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccC-CCcEEEEecCCccccccCCCCEEEEc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      +++||+|||| |+||+++++.|+.+++++||+|+|+++  .++.++||.|... ...++...   +.+++++|||+||++
T Consensus         8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~---~~~~a~~~aDvVii~   83 (326)
T 2zqz_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS---AEYSDAKDADLVVIT   83 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE---CCGGGGGGCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE---CCHHHhCCCCEEEEc
Confidence            4589999996 999999999999999999999999975  5788999999752 12344332   235889999999999


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHH
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~  182 (300)
                      +|.|++||++|.|++.+|+++++++++.|+++||++|++++|||+|++|++    +++.+++|++||||+ |.||++|++
T Consensus        84 ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~----~~k~s~~p~~rviG~gt~LD~~R~~  159 (326)
T 2zqz_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYA----TWKLSGFPKNRVVGSGTSLDTARFR  159 (326)
T ss_dssp             CCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHH----HHHHcCCCHHHEEEccccchHHHHH
Confidence            999999999999999999999999999999999999999999999965544    434335999999999 999999999


Q ss_pred             HHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-----------CCCHHHHHHHHHHHhchhhhhhhhccCCCCC
Q 022263          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----------NLADEDIKALTKRTQDGGTEVVEAKAGKGSA  251 (300)
Q Consensus       183 ~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-----------~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t  251 (300)
                      +++|+++|+++++|+++||||| |+|++|+||++++.+           .++++.++++.++++++|++|++   +||++
T Consensus       160 ~~la~~lgv~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~---~kG~t  235 (326)
T 2zqz_A          160 QSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIK---LKGAT  235 (326)
T ss_dssp             HHHHHHHTCCGGGEECCEEBSS-STTCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHH---HHSCC
T ss_pred             HHHHHHhCCChhheEEEEeccc-CCceEeehhhceECCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHH---cCCCc
Confidence            9999999999999999999999 689999999998643           14556678999999999999998   46899


Q ss_pred             ccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          252 TLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       252 ~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      +|++|.|+++++++|++|   ++.+++++ +++|+|. .++|||+||++|+
T Consensus       236 ~~~~a~aa~~~~~ai~~~---~~~~~~vsv~~~G~yg~~~~~~svP~~ig~  283 (326)
T 2zqz_A          236 FYGIATALARISKAILND---ENAVLPLSVYMDGQYGLNDIYIGTPAVINR  283 (326)
T ss_dssp             CHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHhC---CCcEEEEEEeccCccCCCceEEEEEEEEcC
Confidence            999999999999999997   56789988 7899882 3899999999985

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=100.00  E-value=4.8e-55  Score=405.14  Aligned_cols=257  Identities=23%  Similarity=0.331  Sum_probs=226.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccC-CCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |||+|||| |+||+++++.|+++++++||+|+|+++  .+++++||.|+.. ...++...  ++ +++++|||+||+++|
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~--~~-~~a~~~aD~Vii~ag   76 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA--GS-YGDLEGARAVVLAAG   76 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGTTEEEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE--CC-HHHhCCCCEEEECCC
Confidence            69999996 999999999999999999999999975  5778999999752 12333332  24 588999999999999


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHHH
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~~  184 (300)
                      .|++||++|.|++.+|++++++++++|+++||+++++++|||+|.+|+++   ++.+ ++|++||||+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~---~k~s-~~p~~rviG~gt~LD~~R~~~~  152 (310)
T 2xxj_A           77 VAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVA---YALS-GLPPGRVVGSGTILDTARFRAL  152 (310)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHH-TCCGGGEEECTTHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHH---HHHc-CCCHHHEEecCcchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999665543   3445 5999999999 99999999999


Q ss_pred             HHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCCC------------CCHHHHHHHHHHHhchhhhhhhhccCCCCCc
Q 022263          185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN------------LADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (300)
Q Consensus       185 la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~------------~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~  252 (300)
                      +|+++|+++++|+++||||| |+|++|+||++++.+.            ++++.++++.++++++|++|++   +||+++
T Consensus       153 la~~lgv~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~t~  228 (310)
T 2xxj_A          153 LAEYLRVAPQSVHAYVLGEH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE---GKGATY  228 (310)
T ss_dssp             HHHHHTSCGGGEEEEEEBCS-STTCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHH---HHSCCC
T ss_pred             HHHHhCcCHHHeEEEEeccc-CCccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHh---ccCCcH
Confidence            99999999999999999999 6899999999986431            4566789999999999999998   468999


Q ss_pred             cchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          253 LSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       253 ~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      |++|.|+++++++|++|   ++.+++++ +++|+|. +++|||+||++|+
T Consensus       229 ~~~a~a~~~~~~ai~~~---~~~~~~vs~~~~G~yg~~~~~~~vP~~ig~  275 (310)
T 2xxj_A          229 YGIGAGLARLVRAILTD---EKGVYTVSAFTPEVAGVLEVSLSLPRILGA  275 (310)
T ss_dssp             HHHHHHHHHHHHHHHTT---CCEEEEEEEEEEEETTEEEEEEEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHcC---CCCEEEEEEEEcCccCCccEEEEEEEEEeC
Confidence            99999999999999997   57789988 6899884 6899999999985

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=100.00  E-value=1.1e-54  Score=402.27  Aligned_cols=254  Identities=25%  Similarity=0.431  Sum_probs=224.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccC----CCcEEEEecCCccccccCCCCEEEEc
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~----~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      ||+|||| |+||+++++.++.+++ +||+|+|+++  .++.++|+.|...    ...++.   |+|+ ++++|||+||++
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi~~   74 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG---SNSY-EDMRGSDIVLVT   74 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEEEC
T ss_pred             CEEEECc-CHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEE---CCCH-HHhCCCCEEEEe
Confidence            7999996 9999999999998888 8999999976  5788999998642    233443   3565 789999999999


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHH
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~  182 (300)
                      +|.|++||++|.|++.+|++++++++++++++||++++|++|||+|.++++    .++.+++|++||+|+ |.||++|++
T Consensus        75 ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~----~~k~~~~p~~rviG~gt~LD~~R~~  150 (308)
T 2d4a_B           75 AGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVDAMTYV----MYKKTGFPRERVIGFSGILDSARMA  150 (308)
T ss_dssp             CSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHH----HHHHHCCCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHH----HHHhcCCChhhEEEecccchHHHHH
Confidence            999999999999999999999999999999999999999999999965554    333345999999999 999999999


Q ss_pred             HHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----C-CCHHHHHHHHHHHhchhhhhhhhccCCC-CCccchH
Q 022263          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----N-LADEDIKALTKRTQDGGTEVVEAKAGKG-SATLSMA  256 (300)
Q Consensus       183 ~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----~-~~~~~~~~i~~~v~~~g~~i~~~~~gkg-~t~~~~A  256 (300)
                      +++|+++|+++++|+++||||| |+|++|+||++++.+    + +++++++++.++++++|++|++.   || +++||+|
T Consensus       151 ~~la~~lgv~~~~v~~~v~G~H-g~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kg~s~~~~~a  226 (308)
T 2d4a_B          151 YYISQKLGVSFKSVNAIVLGMH-GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITEL---RGYSSNYGPA  226 (308)
T ss_dssp             HHHHHHHTSCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHH---HSSCCCHHHH
T ss_pred             HHHHHHhCcChhHeEEEEEecc-CCceeeeehhccCCCEEHHHHcCHHHHHHHHHHHHHhhHhhhhC---CCCccHHHHH
Confidence            9999999999999999999999 589999999998753    1 46777899999999999999984   57 9999999


Q ss_pred             HHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          257 YAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       257 ~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      .|+++++++|++|   ++.+++++ +++|+|. +++|||+||++|+
T Consensus       227 ~a~~~~~~ai~~~---~~~v~~vs~~~~G~yg~~~~~~~vP~~ig~  269 (308)
T 2d4a_B          227 AGLVLTVEAIKRD---SKRIYPYSLYLQGEYGYNDIVAEVPAVIGK  269 (308)
T ss_dssp             HHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             HHHHHHHHHHHhC---CCcEEEEEEEEcCccCCCceEEEEEEEEcC
Confidence            9999999999997   56899987 6899883 6899999999985

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=100.00  E-value=1.8e-54  Score=402.49  Aligned_cols=259  Identities=23%  Similarity=0.337  Sum_probs=225.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC--CcEEEEecCCccccccCCCCEEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      ++|||+|||| |++|+++++.|+.+++++||+|+|+++  .+++++|+.|....  ..++...   +.+++++|||+||+
T Consensus         5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~---~~~~a~~~aDvVvi   80 (317)
T 3d0o_A            5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA---GEYSDCHDADLVVI   80 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE---CCGGGGTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe---CCHHHhCCCCEEEE
Confidence            4679999996 999999999999988889999999975  46788999986411  2334332   23588999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHH
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~  181 (300)
                      ++|.|++||++|.|++.+|+++++++++.|+++||+++++++|||+|++|++    +++.+++|++||||+ |.||++|+
T Consensus        81 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~----~~k~~~~p~~rviG~gt~lD~~r~  156 (317)
T 3d0o_A           81 CAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYA----TWKFSGLPKERVIGSGTILDSARF  156 (317)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHH----HHHHhCCCHHHEEecCccccHHHH
Confidence            9999999999999999999999999999999999999999999999965544    433335999999999 99999999


Q ss_pred             HHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----------CCCHHHHHHHHHHHhchhhhhhhhccCCCCC
Q 022263          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEAKAGKGSA  251 (300)
Q Consensus       182 ~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----------~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t  251 (300)
                      ++++|+++|+++++|+++||||| |+|++|+||++++.+          .++++.++++.++++++|++|++   +||++
T Consensus       157 ~~~la~~l~v~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~~  232 (317)
T 3d0o_A          157 RLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQ---AKGAT  232 (317)
T ss_dssp             HHHHHHHHTSCGGGCBCCEEBCS-STTCEECTTTCEETTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHH---HHSCC
T ss_pred             HHHHHHHhCcChhhEEEEEEecC-CCCeeEeeeccccCCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEe---CCCCc
Confidence            99999999999999999999999 689999999998653          13455678999999999999998   46899


Q ss_pred             ccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263          252 TLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       252 ~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                      +|++|.|+++++++|++|   ++.+++++ +++|+| ..++|||+||++|+
T Consensus       233 ~~~~a~a~~~~~~ai~~~---~~~~~~~~~~~~g~~g~~~~~~~vP~~ig~  280 (317)
T 3d0o_A          233 YYGVAMGLARITEAIFRN---EDAVLTVSALLEGEYEEEDVYIGVPAVINR  280 (317)
T ss_dssp             CHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             hHhHHHHHHHHHHHHHcC---CCcEEEEEEeecCccCCCceEEEEEEEEeC
Confidence            999999999999999997   57789988 689988 23899999999985

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=6.3e-54  Score=398.95  Aligned_cols=259  Identities=27%  Similarity=0.391  Sum_probs=217.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccC-CCcEEEEecCCccccccCCCCEEEEc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      +++||+|||| |+||+++++.|+.+++++||+|+|+++  .+++++||.|... ...++...  ++ +++++|||+||++
T Consensus         6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvVii~   81 (318)
T 1y6j_A            6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA--GD-YSDVKDCDVIVVT   81 (318)
T ss_dssp             -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE--CC-HHHhCCCCEEEEc
Confidence            4689999996 999999999999999999999999975  5788999999752 12344332  34 5789999999999


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHH
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~  182 (300)
                      +|.|++||++|.|++.+|+++++++++.|.+++|+++++++|||+|++|+++   ++.+ ++|++||||+ |.||+.|++
T Consensus        82 ~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~---~k~s-~~p~~rviG~gt~Ld~~r~~  157 (318)
T 1y6j_A           82 AGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMI---QKWS-GLPVGKVIGSGTVLDSIRFR  157 (318)
T ss_dssp             CCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHH---HHHH-TCCTTTEEECTTHHHHHHHH
T ss_pred             CCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHH---HHHc-CCCHHHEeccCCchHHHHHH
Confidence            9999999999999999999999999999999999999999999999766543   3445 4999999999 999999999


Q ss_pred             HHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----CC--------CHHHHHHHHHHHhchhhhhhhhccCCCC
Q 022263          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----NL--------ADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (300)
Q Consensus       183 ~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----~~--------~~~~~~~i~~~v~~~g~~i~~~~~gkg~  250 (300)
                      +++|+++|+++++|+++||||| |+|++|+||++++.+    ++        ++++++++.++++++|++|++   +||+
T Consensus       158 ~~la~~lgv~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~  233 (318)
T 1y6j_A          158 YLLSEKLGVDVKNVHGYIIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIK---NKGA  233 (318)
T ss_dssp             HHHHTTTTCCTTTEECCEEBCS-SSSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHH---HTSC
T ss_pred             HHHHHHhCCCHHHeEEEEeccc-CCcEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhh---CCCc
Confidence            9999999999999999999999 689999999997642    12        233468999999999999998   4689


Q ss_pred             CccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       251 t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      ++|++|.|+++++++|++|   ++.+++++ +++|+|. +++|||+||++|+
T Consensus       234 t~~~~a~a~~~~~~ai~~~---~~~~~~~~~~~~G~yg~~~~~~~vP~~ig~  282 (318)
T 1y6j_A          234 TYYGIAVSINTIVETLLKN---QNTIRTVGTVINGMYGIEDVAISLPSIVNS  282 (318)
T ss_dssp             CCHHHHHHHHHHHHHHHHT---CCCEECCEEEECSBTTBCSEEEECCEEEET
T ss_pred             cHHHHHHHHHHHHHHHHcC---CCcEEEEEEeecCccCCcceEEEEEEEEcC
Confidence            9999999999999999998   56788888 6899884 6899999999985

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=100.00  E-value=2.2e-53  Score=392.88  Aligned_cols=258  Identities=28%  Similarity=0.368  Sum_probs=226.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec--CC--cccHHHHhccccC-CCcEEEEecCCccccccCCCCEEEEc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--AN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~--~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      |||+||||+|++|+++++.|+.+++..|++|+|+  ++  .++.++|+.|... ...++...  ++ +++++|||+||++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVi~~   77 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ--GG-YEDTAGSDVVVIT   77 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE--CC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe--CC-HHHhCCCCEEEEc
Confidence            6999999779999999999999888889999999  54  3577899998743 12334332  24 5889999999999


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHH
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~  182 (300)
                      ||.++++|++|.|++..|+++++++++.+++++|+++++++|||+|++|    +++++.+++|++||+|+ |.||++|++
T Consensus        78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~----~~~~~~~~~p~~rviG~gt~Ld~~r~~  153 (303)
T 1o6z_A           78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLN----RHLYEAGDRSREQVIGFGGRLDSARFR  153 (303)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHH----HHHHHHSSSCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHH----HHHHHHcCCCHHHeeecccchhHHHHH
Confidence            9999999999999999999999999999999999999999999999654    44444456999999999 999999999


Q ss_pred             HHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC--CC-CHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHH
Q 022263          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA--NL-ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAG  259 (300)
Q Consensus       183 ~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~--~~-~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~  259 (300)
                      +++|+++|+++++|+++||||| |++++|+||++++..  ++ ++++++++.++++++|++|++   +||+++||+|.|+
T Consensus       154 ~~la~~l~v~~~~v~~~v~G~H-G~~~~p~~s~~~v~g~p~~~~~~~~~~~~~~v~~~g~eii~---~kg~~~~~~a~a~  229 (303)
T 1o6z_A          154 YVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIE---RKGATEWGPARGV  229 (303)
T ss_dssp             HHHHHHHTCCGGGEECCEEECS-STTEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHT---TTSSCCHHHHHHH
T ss_pred             HHHHHHhCcCHHHeEEEEEeCC-CCccccCCcccccCCcCccCCHHHHHHHHHHHHHHhHHHHh---cCCChHHHHHHHH
Confidence            9999999999999999999999 689999999987532  33 677789999999999999998   5789999999999


Q ss_pred             HHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          260 AIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       260 ~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      ++++++|++|   ++.+++++ +++|+|. +++|||+||++|+
T Consensus       230 ~~~~~ai~~~---~~~~~~~~~~~~g~~g~~~~~~~~P~~ig~  269 (303)
T 1o6z_A          230 AHMVEAILHD---TGEVLPASVKLEGEFGHEDTAFGVPVSLGS  269 (303)
T ss_dssp             HHHHHHHHTT---CCCEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             HHHHHHHHhC---CCCEEEEEEecCCccCCcceEEEEEEEEeC
Confidence            9999999998   56789977 6899883 6899999999985

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=100.00  E-value=1.1e-53  Score=394.60  Aligned_cols=251  Identities=20%  Similarity=0.271  Sum_probs=213.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC-cccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      .+++||+|||| |+||+++++.++..++++||+|+|+++ ..++++|+.|...+ .++.   ++|+ ++++|||+||+++
T Consensus        12 ~~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~-~i~~---t~d~-~~l~~aD~Vi~aa   85 (303)
T 2i6t_A           12 KTVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLP-NVEI---SKDL-SASAHSKVVIFTV   85 (303)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCT-TEEE---ESCG-GGGTTCSEEEECC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCC-CeEE---eCCH-HHHCCCCEEEEcC
Confidence            35679999996 999999999999999999999999976 67889999986543 5654   3576 8899999999999


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHH
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~  183 (300)
                      |.+ +|||+|.|++.+|++++++++++++++||+++++++|||+|.    +++++++.+++|++||+|+ |.||++|+++
T Consensus        86 g~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~~----~t~~~~~~~~~p~~rviG~gt~Ld~~R~~~  160 (303)
T 2i6t_A           86 NSL-GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEI----MTYVTWKLSTFPANRVIGIGCNLDSQRLQY  160 (303)
T ss_dssp             CC-----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHHH----HHHHHHHHHCCCGGGEEECTTHHHHHHHHH
T ss_pred             CCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHHH----HHHHHHHhcCCCHHHeeCCCCCchHHHHHH
Confidence            996 899999999999999999999999999999999999999995    4554544456999999999 9999999999


Q ss_pred             HHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchHHHHHHHH
Q 022263          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFA  263 (300)
Q Consensus       184 ~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A~a~~~~i  263 (300)
                      ++|+++|+++++|+++||||| |++++|+||+...   +   ..+++.++++++|++|++   +||+++||+|.|+++++
T Consensus       161 ~la~~lgv~~~~v~~~v~G~H-g~s~~p~~s~~~~---~---~~~~~~~~~~~~g~eii~---~kGst~~~~a~a~~~i~  230 (303)
T 2i6t_A          161 IITNVLKAQTSGKEVWVIGEQ-GEDKVLTWSGQEE---V---VSHTSQVQLSNRAMELLR---VKGQRSWSVGLSVADMV  230 (303)
T ss_dssp             HHHHTSCCTTGGGGEEEEBSC-SSSCEEEEBCSSC---C---CCHHHHHHHHHHHHTTSS---SCCCCHHHHHHHHHHHH
T ss_pred             HHHHHcCCChHHeEEEEecCC-CCCcccccccccc---c---cHHHHHHHHHHHHHHHHH---ccCchHHhHHHHHHHHH
Confidence            999999999999999999999 5799999999632   1   125688889999999997   67899999999999999


Q ss_pred             HHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263          264 DACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWKN  300 (300)
Q Consensus       264 ~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg~  300 (300)
                      ++|++|   ++.+++++ +++|+|  ++++|||+||++|+
T Consensus       231 ~ai~~~---~~~~~~vs~~~~g~yg~~~~~~~~vP~~ig~  267 (303)
T 2i6t_A          231 DSIVNN---KKKVHSVSALAKGYYDINSEVFLSLPCILGT  267 (303)
T ss_dssp             HHHHTT---CCEEEEEEEECTTSTTCCSCCEEEEEEEEET
T ss_pred             HHHHcC---CCcEEEEEEEeCCccCCCCCeEEEEEEEEEC
Confidence            999997   46788888 789988  47999999999985

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=100.00  E-value=2.2e-53  Score=393.83  Aligned_cols=257  Identities=29%  Similarity=0.483  Sum_probs=218.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccC----CCcEEEEecCCccccccCCCCEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~----~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      |||+|||| |+||+++++.|+..++++ |+|+|+++  .++.++|+.|...    ..+++.   ++|+ ++++|||+||+
T Consensus         3 ~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi~   76 (309)
T 1ur5_A            3 KKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG---TNNY-ADTANSDVIVV   76 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESCG-GGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEE---CCCH-HHHCCCCEEEE
Confidence            69999996 999999999999998765 99999976  4677899998631    223443   3576 88999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHH
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~  181 (300)
                      ++|.|++||++|.|++.+|+++++++++.+++++|+++++++|||+|.++++    .++.+++|++||+|+ |.||++|+
T Consensus        77 a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~~~t~~----~~~~~~~~~~rviG~gt~LD~~r~  152 (309)
T 1ur5_A           77 TSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYL----AAEVSGFPKERVIGQAGVLDAARY  152 (309)
T ss_dssp             CCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHHHHHHH----HHHHHCCCGGGEEECCHHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchHHHHHH----HHHHcCCCHHHEEECCcchHHHHH
Confidence            9999999999999999999999999999999999999999999999965554    333345999999999 99999999


Q ss_pred             HHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-----CCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchH
Q 022263          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----NLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (300)
Q Consensus       182 ~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-----~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A  256 (300)
                      ++++|+++|+++++|+++||||| |+|++|+||++++.+     .+++++++++.++++++|++|++. .+||+++||+|
T Consensus       153 ~~~la~~lgv~~~~v~~~v~G~H-g~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~-~~kgs~~~~~a  230 (309)
T 1ur5_A          153 RTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNL-LKTGSAYYAPA  230 (309)
T ss_dssp             HHHHHHHHTCCGGGEEECCEECS-GGGEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHH-HSSCCCCHHHH
T ss_pred             HHHHHHHhCCChhheeEEEecCc-CCceeeeeecceeCCEeHHHHcCHhHHHHHHHHHHhhhHHhhhh-ccCCCcHHHHH
Confidence            99999999999999999999999 589999999998653     246777999999999999999985 35789999999


Q ss_pred             HHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          257 YAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       257 ~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      .|+++++++|++|   ++.+++++ +++|+|. +++|||+||++|+
T Consensus       231 ~a~~~~~~ai~~~---~~~~~~~~~~~~g~~g~~~~~~~vP~~ig~  273 (309)
T 1ur5_A          231 AATAQMVEAVLKD---KKRVMPVAAYLTGQYGLNDIYFGVPVILGA  273 (309)
T ss_dssp             HHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             HHHHHHHHHHHcC---CCcEEEEEEEecCccCCcceEEEEEEEEeC
Confidence            9999999999997   56899987 7899883 6899999999985

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=100.00  E-value=4.4e-53  Score=392.99  Aligned_cols=260  Identities=23%  Similarity=0.318  Sum_probs=225.9

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC--CcEEEEecCCccccccCCCCEEE
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      ++++||+|||| |.||+++++.|+..++++||+|+|+++  .++.++|+.|....  ..++...  ++ +++++|||+||
T Consensus         4 ~~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~--~~-~~al~~aDvVi   79 (316)
T 1ldn_A            4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH--GD-YDDCRDADLVV   79 (316)
T ss_dssp             TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE--CC-GGGTTTCSEEE
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc--Cc-HHHhCCCCEEE
Confidence            35679999996 999999999999888889999999976  46778999986431  1344432  23 57899999999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHH
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR  180 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R  180 (300)
                      ++++.++++|++|.|++.+|.++++++++++++++|+++++++|||+|.+|+++   ++.+ ++|++||+|+ |.||++|
T Consensus        80 ia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~~~~~~~---~~~s-~~p~~rviG~gt~lD~~r  155 (316)
T 1ldn_A           80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYAT---WKFS-GLPHERVIGSGTILDTAR  155 (316)
T ss_dssp             ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH---HHHH-TCCGGGEEECTTHHHHHH
T ss_pred             EcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHHH---HHHh-CCCHHHEEecccchHHHH
Confidence            999999999999999999999999999999999999999999999999665543   3444 5999999999 9999999


Q ss_pred             HHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----C-------CCHHHHHHHHHHHhchhhhhhhhccCCC
Q 022263          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----N-------LADEDIKALTKRTQDGGTEVVEAKAGKG  249 (300)
Q Consensus       181 ~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----~-------~~~~~~~~i~~~v~~~g~~i~~~~~gkg  249 (300)
                      +++++|+++|+++++|+++||||| |+|++|+||++++.+    +       +++++++++.++++++|++|++   +||
T Consensus       156 ~~~~la~~l~v~~~~v~~~v~G~H-G~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg  231 (316)
T 1ldn_A          156 FRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIE---KKG  231 (316)
T ss_dssp             HHHHHHHHHTSCGGGEEEEEEBCS-STTCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHH---HHS
T ss_pred             HHHHHHHHhCCCHHHeEEEEeccc-CCceeeeehhccCCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHHHh---ccC
Confidence            999999999999999999999999 689999999987642    1       3344578999999999999998   468


Q ss_pred             CCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          250 SATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       250 ~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      +++|++|.|+++++++|++|   ++.+++++ +++|+|. +++|||+||++|+
T Consensus       232 ~~~~~~a~a~~~~~~ai~~~---~~~~~~~~~~~~g~yg~~~~~~~vP~~ig~  281 (316)
T 1ldn_A          232 ATYYGIAMGLARVTRAILHN---ENAILTVSAYLDGLYGERDVYIGVPAVINR  281 (316)
T ss_dssp             CCCHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESTTSCEEEEEEEEEEEET
T ss_pred             CcHHHHHHHHHHHHHHHHhC---CCcEEEEEEEecCccCCcceEEEEEEEEeC
Confidence            99999999999999999997   56789988 6899984 6899999999985

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=100.00  E-value=5.4e-53  Score=391.87  Aligned_cols=260  Identities=27%  Similarity=0.417  Sum_probs=220.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec--CC--cccHHHHhccccCC--CcEEEEecCCccccccCCCCEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--AN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~--~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      |||+||||+|++|+++++.|+.+++..|++|+|+  ++  .+++++|+.|....  ..++...++++++++++|||+||+
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            6999999889999999999999888889999999  54  46788999986421  123333222236789999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHH
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~  181 (300)
                      +||.++++|++|.|++..|+++++++++.+++++ +++++++|||+|++|+++   ++.+ ++|++|++|+ |.||+.|+
T Consensus        81 ~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~~~t~~~---~k~~-~~p~~rviG~gt~LD~~r~  155 (313)
T 1hye_A           81 TSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVDVMTYKA---LVDS-KFERNQVFGLGTHLDSLRF  155 (313)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHHHHHHHH---HHHH-CCCTTSEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHHHHHHHH---HHhh-CcChhcEEEeCccHHHHHH
Confidence            9999999999999999999999999999999999 999999999999766553   3444 5999999999 99999999


Q ss_pred             HHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----C---CCHHHHHHHHHHHhchhhhhhhhccCCCCCccc
Q 022263          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----N---LADEDIKALTKRTQDGGTEVVEAKAGKGSATLS  254 (300)
Q Consensus       182 ~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----~---~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~  254 (300)
                      ++++|+++|+++++|+++||||| |++++|+||++++.+    +   +++++++++.++++++|++|++   +||+++||
T Consensus       156 ~~~la~~lgv~~~~v~~~v~G~H-g~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kgs~~~~  231 (313)
T 1hye_A          156 KVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIR---LKGGSEFG  231 (313)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECS-STTEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---------CC
T ss_pred             HHHHHHHhCcCHHHeEEEEeecc-CCcccceeeccccCCEEHHHHhcCCHHHHHHHHHHHHhccceeec---CCCCcHHH
Confidence            99999999999999999999999 589999999998653    2   2556689999999999999998   57899999


Q ss_pred             hHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-C-CcCEEEEeEEecC
Q 022263          255 MAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-T-ELPFFASKRAWKN  300 (300)
Q Consensus       255 ~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~-~~~~~S~Pv~lg~  300 (300)
                      +|.|+++++++|++|   ++.+++++ +++|+| . +++|||+||++|+
T Consensus       232 ~a~a~~~~~~ai~~~---~~~~~~~~~~~~g~~~g~~~~~~~~P~~ig~  277 (313)
T 1hye_A          232 PAAAILNVVRCIVNN---EKRLLTLSAYVDGEFDGIRDVCIGVPVKIGR  277 (313)
T ss_dssp             HHHHHHHHHHHHHTT---CCEEEEEEEEEESSSSSCEEEEEEEEEEEET
T ss_pred             HHHHHHHHHHHHHcC---CCeEEEEEEeecceecCccceEEEEEEEEeC
Confidence            999999999999997   56788888 689988 3 5899999999985

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=100.00  E-value=9.4e-52  Score=385.86  Aligned_cols=258  Identities=35%  Similarity=0.561  Sum_probs=224.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccC----CCcEEEEecCCccccccCCCCEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~----~~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      ++||+|||| |.+|++++..|+..+++ +|+|+|+++  .++.++|+.|...    +.+++.   |+|+ +++++||+||
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la~~g~~-~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~VI   87 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLGQKDLG-DVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG---ENNY-EYLQNSDVVI   87 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE---CCCH-HHHCCCCEEE
Confidence            469999996 99999999999999886 499999976  3566778877642    234543   4577 8899999999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee-ehhHHH
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVR  180 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t-~Lds~R  180 (300)
                      +++|.|++||++|.|++.+|++++++++++|.++||+++++++|||+|.+++    +.++.++|||+||+|+| .||++|
T Consensus        88 ~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~t~----~~~~~~~~~~~rviG~~t~Ld~~R  163 (328)
T 2hjr_A           88 ITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAMVY----YFKEKSGIPANKVCGMSGVLDSAR  163 (328)
T ss_dssp             ECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHH----HHHHHHCCCGGGEEESCHHHHHHH
T ss_pred             EcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHHHHH----HHHHhcCCChhhEEEeCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999996544    44444459999999995 999999


Q ss_pred             HHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----C------CCHHHHHHHHHHHhchhhhhhhhccCCCC
Q 022263          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----N------LADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (300)
Q Consensus       181 ~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----~------~~~~~~~~i~~~v~~~g~~i~~~~~gkg~  250 (300)
                      +++++|+++|+++++|+++||||| |+|++|+||++++.+    +      +++++++++.++++++|++|++++ +||+
T Consensus       164 ~~~~la~~lgv~~~~v~~~v~G~H-g~t~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~~-~~gs  241 (328)
T 2hjr_A          164 FRCNLSRALGVKPSDVSAIVVGGH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGS  241 (328)
T ss_dssp             HHHHHHHHHTSCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSCC
T ss_pred             HHHHHHHHhCCCHHHeeEEEecCC-CCceeeeeeeceECCEEHHHHhhccCCCHHHHHHHHHHHHhhHHHHHhhh-CCCc
Confidence            999999999999999999999999 589999999987643    1      456667899999999999999964 6899


Q ss_pred             CccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       251 t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      ++||+|.++++++++|++|   ++.+++++ +++|+|+ +++|||+||++|+
T Consensus       242 ~~~~~a~a~~~i~~ai~~~---~~~v~~~~v~~~G~~g~~~~~~~vP~~ig~  290 (328)
T 2hjr_A          242 AFYAPAASAVAMAQAYLKD---SKSVLVCSTYLTGQYNVNNLFVGVPVVIGK  290 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             hHHHHHHHHHHHHHHHHcC---CCcEEEEEEeecCccCCCceEEEEEEEEeC
Confidence            9999999999999999997   56899987 6899884 6899999999985

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=100.00  E-value=2.8e-51  Score=381.70  Aligned_cols=257  Identities=30%  Similarity=0.482  Sum_probs=224.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhcccc----CCCcEEEEecCCccccccCCCCEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVV  100 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~~a~~~aDiV  100 (300)
                      +++||+|||| |++|++++..|+..++++ |+|+|+++  .++.++|+++..    ...+++.   ++|+ ++++|||+|
T Consensus         3 ~~~kI~VIGa-G~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~V   76 (322)
T 1t2d_A            3 PKAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG---SNTY-DDLAGADVV   76 (322)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE---ECCG-GGGTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCCEE
Confidence            3579999996 999999999999999875 99999976  467788888863    1234443   3577 889999999


Q ss_pred             EEcCCCCCCCCCc-----chhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-e
Q 022263          101 IIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-T  174 (300)
Q Consensus       101 Ii~ag~~~~~g~~-----r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t  174 (300)
                      |+++|.|+++|++     |.|++.+|++++++++++|.++||++++|++|||+|.++++    .++.++|||+||+|+ |
T Consensus        77 i~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~~~t~~----~~~~~g~~~~rviG~gt  152 (322)
T 1t2d_A           77 IVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQL----LHQHSGVPKNKIIGLGG  152 (322)
T ss_dssp             EECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHH----HHHHHCCCGGGEEECCH
T ss_pred             EEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHH----HHHhcCCChHHEEeccC
Confidence            9999999999999     99999999999999999999999999999999999965444    434345999999999 5


Q ss_pred             ehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----------CCCHHHHHHHHHHHhchhhhhhhh
Q 022263          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEA  244 (300)
Q Consensus       175 ~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----------~~~~~~~~~i~~~v~~~g~~i~~~  244 (300)
                      .||++|+++++|+++|+++++|+++||||| |++++|+||++++.+          .+++++++++.++++++|++|++.
T Consensus       153 ~ld~~R~~~~la~~lgv~~~~v~~~v~G~H-G~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~  231 (322)
T 1t2d_A          153 VLDTSRLKYYISQKLNVCPRDVNAHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL  231 (322)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhCCCHHHeEEEEEcCC-CCcEEeeHHHceECcEeHHHhccccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999 589999999987642          145666899999999999999995


Q ss_pred             ccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       245 ~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                         ||+++||+|.|+++++++|++|   ++.+++++ +++|+|+ +++|||+||++|+
T Consensus       232 ---kgs~~~~~a~a~~~~~~ai~~~---~~~v~~~s~~~~g~~g~~~~~~~vP~~ig~  283 (322)
T 1t2d_A          232 ---HASPYVAPAAAIIEMAESYLKD---LKKVLICSTLLEGQYGHSDIFGGTPVVLGA  283 (322)
T ss_dssp             ---TSSCCHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             ---cCchHHHHHHHHHHHHHHHHhC---CCCEEEEEEEecCccCCCceEEEEEEEEeC
Confidence               5799999999999999999997   57899987 7899884 6999999999985

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=100.00  E-value=5.4e-51  Score=381.19  Aligned_cols=260  Identities=27%  Similarity=0.491  Sum_probs=224.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhcccc----CCCcEEEEecCCccccccCCCCEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVV  100 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~----~~~~v~~~~~t~d~~~a~~~aDiV  100 (300)
                      ++|||+|||| |++|++++..|+..+++ +|+|+|+++.  ++.++|+.|..    .+..++.   |+|+++++++||+|
T Consensus         8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~-~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~~ea~~~aDiV   82 (331)
T 1pzg_A            8 RRKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA---EYSYEAALTGADCV   82 (331)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE---ECSHHHHHTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE---eCCHHHHhCCCCEE
Confidence            3579999996 99999999999998876 4999999763  55567887753    1234443   46887799999999


Q ss_pred             EEcCCCCCCCCC-----cchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-e
Q 022263          101 IIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-T  174 (300)
Q Consensus       101 Ii~ag~~~~~g~-----~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t  174 (300)
                      |+++|.|+++|+     +|.|++.+|++++++++++|.++||+++++++|||+|+++++    .++.+++|++||+|+ |
T Consensus        83 i~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~t~~----~~~~~~~~~~rviG~gt  158 (331)
T 1pzg_A           83 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKV----MCEASGVPTNMICGMAC  158 (331)
T ss_dssp             EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHH----HHHHHCCCGGGEEECCH
T ss_pred             EEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHHHHH----HHHhcCCChhcEEeccc
Confidence            999999999999     999999999999999999999999999999999999965444    433345999999999 6


Q ss_pred             ehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCCC----------CCHHHHHHHHHHHhchhhhhhhh
Q 022263          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN----------LADEDIKALTKRTQDGGTEVVEA  244 (300)
Q Consensus       175 ~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~----------~~~~~~~~i~~~v~~~g~~i~~~  244 (300)
                      .||++|+++++|+++|+++++|+++|||+| |+++||+||++++.+.          +++++++++.++++++|++|+++
T Consensus       159 ~LD~~R~~~~la~~lgv~~~~v~~~v~G~H-g~~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~eii~~  237 (331)
T 1pzg_A          159 MLDSGRFRRYVADALSVSPRDVQATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRF  237 (331)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCHHHceEEEecCC-CCCEeeeeecceECCEEHHHHhhcccCCHHHHHHHHHHHHhccHHHHHh
Confidence            999999999999999999999999999999 5899999999986431          45666889999999999999985


Q ss_pred             ccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       245 ~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      . +||+++||+|.++++++++|++|   ++.+++++ +++|+|+ +++|||+||++|+
T Consensus       238 ~-~kgst~~~~a~a~~~ii~ai~~~---~~~~~~~~v~~~G~~g~~~~~~~vP~~vg~  291 (331)
T 1pzg_A          238 L-GQGSAYYAPAASAVAMATSFLND---EKRVIPCSVYCNGEYGLKDMFIGLPAVIGG  291 (331)
T ss_dssp             H-SSSCCCHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             h-cCCCccchHHHHHHHHHHHHHhC---CCcEEEEEEEecCccCCCceEEEEEEEEeC
Confidence            2 57899999999999999999997   56899987 6899884 6899999999985

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=100.00  E-value=3.5e-50  Score=371.56  Aligned_cols=252  Identities=25%  Similarity=0.335  Sum_probs=198.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC-CcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |||+|||| |++|+++++.|+..+++++|+|+|+++  .++.++|+.|.... ...+...  +++ +++++||+||++++
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~~~-~a~~~aDvVIi~~~   76 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH--GGH-SELADAQVVILTAG   76 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE--ECG-GGGTTCSEEEECC-
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE--CCH-HHhCCCCEEEEcCC
Confidence            69999996 999999999999999889999999976  36778899886521 1223322  244 78999999999999


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHHH
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~~  184 (300)
                      .|++||++|.|++.+|++++++++++|.+++|+++++++|||+|.++++    +.+.  .|++||+|+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~----~~~~--~~~~rviG~gt~Ld~~r~~~~  150 (304)
T 2v6b_A           77 ANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDL----ATQL--APGQPVIGSGTVLDSARFRHL  150 (304)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHH----HHHH--SCSSCEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHH----HHHh--CChhcEEeCCcCchHHHHHHH
Confidence            9999999999999999999999999999999999999999999965444    3333  389999999 99999999999


Q ss_pred             HHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCCC------------CCHHHHHHHHHHHhchhhhhhhhccCCCCCc
Q 022263          185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN------------LADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (300)
Q Consensus       185 la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~------------~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~  252 (300)
                      +|+++|+++++|+++||||| |++++|+||++++.+.            ++++.++++.++++++|++|++   +||+|+
T Consensus       151 la~~l~v~~~~v~~~v~G~H-g~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~---~kg~t~  226 (304)
T 2v6b_A          151 MAQHAGVDGTHAHGYVLGEH-GDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIE---GKRATY  226 (304)
T ss_dssp             HHHHHTSCGGGEECCEEESS-STTEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC--------------CC
T ss_pred             HHHHhCcCHHHceEEEecCC-CCceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHh---ccCCcH
Confidence            99999999999999999999 6899999999987531            4566789999999999999998   578999


Q ss_pred             cchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCCCcCEEEEeEEecC
Q 022263          253 LSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVTELPFFASKRAWKN  300 (300)
Q Consensus       253 ~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~~~~~~S~Pv~lg~  300 (300)
                      |++|.|+++++++|++|   ++.+++++ +++| |+  +|||+||++|+
T Consensus       227 ~~~a~a~~~~~~ai~~~---~~~~~~~~~~~~g-yg--~~~~~P~~ig~  269 (304)
T 2v6b_A          227 YGIGAALARITEAVLRD---RRAVLTVSAPTPE-YG--VSLSLPRVVGR  269 (304)
T ss_dssp             HHHHHHHHHHHHHHHTT---CCEEEEEEEEETT-TT--EEEEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHhC---CCcEEEEEEEECC-cC--cEEEEEEEEeC
Confidence            99999999999999997   67899988 6788 84  99999999985

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=100.00  E-value=1.3e-49  Score=368.59  Aligned_cols=258  Identities=31%  Similarity=0.489  Sum_probs=223.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhcccc----CCCcEEEEecCCccccccCCCCEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~----~~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      |||+|||| |.+|++++..|+..++..+|+|+|+++.  ++..+|+.|..    .+..+..   ++|++ ++++||+||+
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~~-~l~~aDvVii   75 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG---SNDYA-DTANSDIVII   75 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE---ESCGG-GGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEE---CCCHH-HHCCCCEEEE
Confidence            69999996 9999999999998765569999999763  56666777752    1223433   35664 5999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHH
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~  181 (300)
                      +++.|+++|++|.|++.+|+++++++++.|++++|+++++++|||+|+++++    +++.+++|++|++|+ |.||+.|+
T Consensus        76 av~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~~~~~~----~~~~~~~~~~rviG~gt~ld~~r~  151 (310)
T 1guz_A           76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHV----AWVRSGLPKERVIGMAGVLDAARF  151 (310)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHH----HHHHHCSCGGGEEEECHHHHHHHH
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchHHHHHH----HHHhcCCChHHEEECCCchHHHHH
Confidence            9999999999999999999999999999999999999999999999965544    333345999999999 99999999


Q ss_pred             HHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-----CCCHHHHHHHHHHHhchhhhhhhhccCCCCCccchH
Q 022263          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----NLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (300)
Q Consensus       182 ~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-----~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~~~A  256 (300)
                      ++++|+++|+++++|+++||||| |++++|+||++++.+     .+++++++++.++++++|++|++. .+||+++||+|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~G~H-g~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~-~~kgs~~~~~a  229 (310)
T 1guz_A          152 RSFIAMELGVSMQDINACVLGGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPA  229 (310)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECS-GGGEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHH-HSSSCCCHHHH
T ss_pred             HHHHHHHhCCCHHHeEEEEEccc-CCcEeeeeecccCCCEEHHHHCCHHHHHHHHHHHHHhHHHHHhh-cCCCCcHHHHH
Confidence            99999999999999999999999 589999999998753     146777899999999999999986 35789999999


Q ss_pred             HHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          257 YAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       257 ~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      .|+++++++|++|   ++.+++++ +++|+|. +++|||+||++|+
T Consensus       230 ~a~~~~~~ai~~~---~~~~~~~~~~~~g~~g~~~~~~~~P~~ig~  272 (310)
T 1guz_A          230 SSVVEMVESIVLD---RKRVLPCAVGLEGQYGIDKTFVGVPVKLGR  272 (310)
T ss_dssp             HHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             HHHHHHHHHHHcC---CCcEEEEEEeecCccCCcceEEEEEEEEeC
Confidence            9999999999997   56899987 6899883 6899999999985

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=100.00  E-value=1.3e-49  Score=371.58  Aligned_cols=262  Identities=24%  Similarity=0.287  Sum_probs=221.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecC----C--cccHHHHhccccCCCcEEEEecCCccccccC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIA----N--TPGVAADVGHINTRSEVAGYMGNDQLGQALE   95 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~----~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~   95 (300)
                      ++|||+||||+|+||+++++.|+.+++++     ||+|+|++    +  .+++++||.|...+. ...+..+++++++++
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-~~~i~~~~~~~~al~   82 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-LAGMTAHADPMTAFK   82 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-EEEEEEESSHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-cCcEEEecCcHHHhC
Confidence            56899999977999999999999988763     99999997    4  467899999964332 222223467789999


Q ss_pred             CCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee
Q 022263           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t  174 (300)
                      |||+||++||.++++|++|.|++..|+++++++++.++++| |++++|++|||+|.+|+++   ++.+++||++|++|+|
T Consensus        83 ~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~---~~~~~~~p~~~v~g~t  159 (329)
T 1b8p_A           83 DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIA---MKSAPSLPAKNFTAML  159 (329)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEECC
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHH---HHHcCCCCHHHEEEee
Confidence            99999999999999999999999999999999999999997 9999999999999766553   3445369999999999


Q ss_pred             ehhHHHHHHHHHHHcCCCCCceEE-EEEecCCCCceeeccCcCcCCCC-----CC-HHH-HHHHHHHHhchhhhhhhhcc
Q 022263          175 TLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKAN-----LA-DED-IKALTKRTQDGGTEVVEAKA  246 (300)
Q Consensus       175 ~Lds~R~~~~la~~l~v~~~~V~~-~v~G~h~g~t~vp~~S~~~~~~~-----~~-~~~-~~~i~~~v~~~g~~i~~~~~  246 (300)
                      .||+.|+++++|+++|+++++|+. +||||| |+|++|+||++++.+.     ++ +++ .+++.++++++|++|++.| 
T Consensus       160 ~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~H-g~s~~p~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~~k-  237 (329)
T 1b8p_A          160 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNH-SPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-  237 (329)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCS-STTCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHhCcCHHHceEEEEEecc-CCcEeeehHHCeECCeeHHHHhccchhhHHHHHHHHHHHHHhhhhcc-
Confidence            999999999999999999999995 689999 5799999999987641     22 222 4799999999999999975 


Q ss_pred             CCCCCccc-hHHHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEe
Q 022263          247 GKGSATLS-MAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAW  298 (300)
Q Consensus       247 gkg~t~~~-~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~l  298 (300)
                        |.++|+ .|.|+++++++|+++.  ++.+++++ +++|+|  ++++|||+||++
T Consensus       238 --g~~~~~~~a~a~~~~~~ai~~~~--~~~~~~~s~~~~g~yg~~~~~~~s~P~~i  289 (329)
T 1b8p_A          238 --GVSSAASAANAAIDHIHDWVLGT--AGKWTTMGIPSDGSYGIPEGVIFGFPVTT  289 (329)
T ss_dssp             --SSCCHHHHHHHHHHHHHHHHHCC--TTCCEEEEEECCSGGGCCTTCEEEEEEEE
T ss_pred             --CCChHHHHHHHHHHHHHHHhcCC--CCcEEEEEEEecCccCCCCCeEEEEEEEE
Confidence              345555 5668999999999974  45699988 578888  589999999998

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=1e-46  Score=350.58  Aligned_cols=257  Identities=27%  Similarity=0.437  Sum_probs=218.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC-CcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |||+|||| |.+|++++..|+..++.++|+|+|+++  .++..+|+.+.... ...+... + |+ +++++||+||++++
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~-d~-~~~~~aDvViiav~   76 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA-G-DY-ADLKGSDVVIVAAG   76 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE-C-CG-GGGTTCSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe-C-CH-HHhCCCCEEEEccC
Confidence            69999996 999999999999888888999999975  34556666654311 1122222 3 54 78999999999999


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHHHHH
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~~~~  184 (300)
                      .+++||++|.|++.+|+++++++++.|.+++|+++++++|||++.+++    +.++..++|++||+|+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~----~~~~~~~~~~~rviG~~t~ld~~r~~~~  152 (319)
T 1a5z_A           77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTY----FFLKESGMDPRKVFGSGTVLDTARLRTL  152 (319)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHH----HHHHHHTCCTTTEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHH----HHHHHhCCChhhEEeeCccHHHHHHHHH
Confidence            999999999999999999999999999999999999999999996544    3333334999999999 68999999999


Q ss_pred             HHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----------C-CCHHHHHHHHHHHhchhhhhhhhccCCCCCcc
Q 022263          185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------N-LADEDIKALTKRTQDGGTEVVEAKAGKGSATL  253 (300)
Q Consensus       185 la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----------~-~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~~  253 (300)
                      +|+++|+++++|+++||||| |++++|+||++++.+          . ++++.++++.++++++|+++++.   ||+++|
T Consensus       153 la~~lgv~~~~v~~~v~G~h-g~~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kg~~~~  228 (319)
T 1a5z_A          153 IAQHCGFSPRSVHVYVIGEH-GDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIER---KGATHY  228 (319)
T ss_dssp             HHHHHTCCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHH---HSCCCH
T ss_pred             HHHHhCcCHHHceEEEEeCC-CCCcccchhhceECCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhcc---CCchHH
Confidence            99999999999999999999 689999999998642          1 45667889999999999999984   689999


Q ss_pred             chHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          254 SMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       254 ~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      ++|.|+++++++|++|   ++.+++++ +++|+|. +++|||+||++|+
T Consensus       229 ~~a~a~~~~~~ai~~~---~~~~~~~~~~~~g~~g~~~~~~~vP~~vg~  274 (319)
T 1a5z_A          229 AIALAVADIVESIFFD---EKRVLTLSVYLEDYLGVKDLCISVPVTLGK  274 (319)
T ss_dssp             HHHHHHHHHHHHHHTT---CCEEEEEEEEESSBTTBCSEEEEEEEEEET
T ss_pred             HHHHHHHHHHHHHHhC---CCCEEEEEEEecCccCccceEEEEEEEEeC
Confidence            9999999999999997   57789988 6788884 6899999999985

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=100.00  E-value=1.9e-44  Score=334.81  Aligned_cols=258  Identities=33%  Similarity=0.489  Sum_probs=221.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhcccc----CCCcEEEEecCCccccccCCCCEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~----~~~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      +|||+|||| |.+|+.++..|+..++. +|+|+|+++.  ++..+|+.+..    ....+..   ++|+ +++++||+||
T Consensus         4 ~~kI~VIGa-G~~G~~ia~~la~~g~~-~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~-~a~~~aDiVi   77 (317)
T 2ewd_A            4 RRKIAVIGS-GQIGGNIAYIVGKDNLA-DVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG---TDDY-ADISGSDVVI   77 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCCEEE
Confidence            579999996 99999999999988865 6999999763  44466776642    1223443   3566 7899999999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHH
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR  180 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R  180 (300)
                      +++|.|++||++|.|++.+|.+++++++++|.+++|+++++++|||++.++++   +.+.+ ++||+|++|+ |.+|+.|
T Consensus        78 ~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~---~~~~~-~~~~~rviG~~t~ld~~r  153 (317)
T 2ewd_A           78 ITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSH---FQKVS-GLPHNKVCGMAGVLDSSR  153 (317)
T ss_dssp             ECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHH---HHHHH-CCCGGGEEESCHHHHHHH
T ss_pred             EeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH---HHHhh-CCCHHHEEeccCcHHHHH
Confidence            99999999999999999999999999999999999999999999999965443   23444 4999999999 5999999


Q ss_pred             HHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----------CCCHHHHHHHHHHHhchhhhhhhhccCCCC
Q 022263          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (300)
Q Consensus       181 ~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----------~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~  250 (300)
                      +++++|+++|+++++++++|+|+| |++++|+||++++.+          .+++++++++.++++.++++++++. |+|+
T Consensus       154 ~~~~la~~lg~~~~~v~~~v~g~H-g~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei~~~~-g~g~  231 (317)
T 2ewd_A          154 FRTFIAQHFGVNASDVSANVIGGH-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGT  231 (317)
T ss_dssp             HHHHHHHHHTSCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH-SSSC
T ss_pred             HHHHHHHHhCcChhhceEEEEecC-CCceeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHHHHhh-cCCc
Confidence            999999999999999999999999 579999999996542          2567778899999999999999974 7899


Q ss_pred             CccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       251 t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      ++|++|.++++++++|++|   ++.+++++ +.+|+|+ +++|||+||++|+
T Consensus       232 ~~~~~a~a~~~~~~ai~~~---~~~~~~~~~~~~G~~g~~~~~~~~P~~i~~  280 (317)
T 2ewd_A          232 AYFAPAAAAVKMAEAYLKD---KKAVVPCSAFCSNHYGVKGIYMGVPTIIGK  280 (317)
T ss_dssp             CCHHHHHHHHHHHHHHHTT---CCEEEEEEEEESSSTTCSSEEEEEEEEEET
T ss_pred             hHHHHHHHHHHHHHHHHcC---CCeEEEEEEEecCccCCcceEEEeEEEEcC
Confidence            9999999999999999987   56799987 6788884 6999999999985

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=3.8e-45  Score=338.30  Aligned_cols=255  Identities=19%  Similarity=0.266  Sum_probs=212.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccC--CCcEEEEecCCccccccCCCCEEEEc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      ||||+|||+ |.+|++++..|+..++..+|+|+|+++  .++.++|+.|...  ...++...  +|+ +++++||+||++
T Consensus         1 m~kI~VIGa-G~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~d~-~~~~~aDvViia   76 (309)
T 1hyh_A            1 ARKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI--NDW-AALADADVVIST   76 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE--SCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEe--CCH-HHhCCCCEEEEe
Confidence            579999995 999999999999888656999999975  3455667665431  11234322  466 789999999999


Q ss_pred             CCCCCC----CCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhH
Q 022263          104 AGVPRK----PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDV  178 (300)
Q Consensus       104 ag~~~~----~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds  178 (300)
                      ++.+++    ||++|.|++.+|+++++++++.+.+++|+++++++|||+|.    ++++.++.+++|++|++|+ |.||+
T Consensus        77 v~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~----~~~~~~~~~~~~~~rvig~gt~ld~  152 (309)
T 1hyh_A           77 LGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDV----ITALFQHVTGFPAHKVIGTGTLLDT  152 (309)
T ss_dssp             CSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHH----HHHHHHHHHCCCGGGEEECTTHHHH
T ss_pred             cCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHHH----HHHHHHHhcCCCHHHEeecCccchH
Confidence            999988    99999999999999999999999999999999999999995    4555555545999999999 99999


Q ss_pred             HHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----C---CCHHHHHHHHHHHhchhhhhhhhccCCCCC
Q 022263          179 VRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----N---LADEDIKALTKRTQDGGTEVVEAKAGKGSA  251 (300)
Q Consensus       179 ~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----~---~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t  251 (300)
                      .|+++++++++++++++++++++|+| |++++|+||++++.+    +   +++++++++.++++++|++|++.   ||++
T Consensus       153 ~r~~~~~a~~l~~~~~~v~~~v~G~h-g~~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~---kg~~  228 (309)
T 1hyh_A          153 ARMQRAVGEAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNG---KGYT  228 (309)
T ss_dssp             HHHHHHHHHHHTCCGGGCBCCEEBCT-TTTCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHH---HSSC
T ss_pred             HHHHHHHHHHhCCChhheEEEEEeCC-CCcEeeccccceECCEEHHHhccCCHHHHHHHHHHHHHhHHHHHhc---cCCc
Confidence            99999999999999999999999999 689999999987653    1   45666899999999999999985   5789


Q ss_pred             ccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCCCcCEEEEeEEecC
Q 022263          252 TLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVTELPFFASKRAWKN  300 (300)
Q Consensus       252 ~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~~~~~~S~Pv~lg~  300 (300)
                      +|++|.++++++++|++|   ++.+++++ +++|   +++|||+||++|+
T Consensus       229 ~~~~a~a~~~~~~ai~~~---~~~~~~~~~~~~g---~~~~~~vP~~i~~  272 (309)
T 1hyh_A          229 SYGVATSAIRIAKAVMAD---AHAELVVSNRRDD---MGMYLSYPAIIGR  272 (309)
T ss_dssp             CHHHHHHHHHHHHHHHTT---CCEEEEEEEECTT---TCSEEEEEEEEET
T ss_pred             hHHHHHHHHHHHHHHHcC---CCcEEEEEEEECC---CCeEEEEEEEEeC
Confidence            999999999999999997   56799987 5676   7899999999985

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=100.00  E-value=1.6e-41  Score=316.13  Aligned_cols=263  Identities=27%  Similarity=0.346  Sum_probs=217.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCC-----CEEEEEecCC----cccHHHHhccccCCCcEEEEecCCccccccCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~-----~el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~a   97 (300)
                      ++|||+|+||+|++|++++..|+.++++     .+|+++|+..    ..+.++|+.|...+. +..+..+.+++++++++
T Consensus         3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~-~~di~~~~~~~~a~~~~   81 (327)
T 1y7t_A            3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPL-LAGLEATDDPKVAFKDA   81 (327)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-EEEEEEESCHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccc-cCCeEeccChHHHhCCC
Confidence            4589999998899999999999988865     3999999864    356778998864321 22222234667889999


Q ss_pred             CEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeh
Q 022263           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL  176 (300)
Q Consensus        98 DiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~L  176 (300)
                      |+||++||.+++++++|.+++..|+++++++++.+++++ |+++++++|||+|.++++.   .+.++.+||.+++|.|.|
T Consensus        82 D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~---~~~~~~~~p~~~yg~tkl  158 (327)
T 1y7t_A           82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRL  158 (327)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEECCHH
T ss_pred             CEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHH---HHHcCCCChhheeccchH
Confidence            999999999999999999999999999999999999997 9999999999998655542   233324889999999999


Q ss_pred             hHHHHHHHHHHHcCCCCCceE-EEEEecCCCCceeeccCcCcCCC----C-CCHHH-HHHHHHHHhchhhhhhhhccCCC
Q 022263          177 DVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA----N-LADED-IKALTKRTQDGGTEVVEAKAGKG  249 (300)
Q Consensus       177 ds~R~~~~la~~l~v~~~~V~-~~v~G~h~g~t~vp~~S~~~~~~----~-~~~~~-~~~i~~~v~~~g~~i~~~~~gkg  249 (300)
                      |+.|+.+++++++|+++..++ .+|+|+|+ ++++|.|+++...+    . +++++ ++++.++++++|++|++.|   |
T Consensus       159 ~~er~~~~~a~~~g~~~~~vr~~~V~G~h~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~v~~~g~~ii~~k---g  234 (327)
T 1y7t_A          159 DHNRAKAQLAKKTGTGVDRIRRMTVWGNHS-STMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR---G  234 (327)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEECCEEEBCSS-TTCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH---S
T ss_pred             HHHHHHHHHHHHhCcChhheeeeEEEcCCC-CeEEEEeeeeeeCCeeHHHhccchhHHHHHHHHHHHHHHHHHHcc---C
Confidence            999999999999999999998 57999995 79999999987643    1 34444 5899999999999999975   3


Q ss_pred             CCcc-chHHHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEe
Q 022263          250 SATL-SMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAW  298 (300)
Q Consensus       250 ~t~~-~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~l  298 (300)
                      .++| ++|.|+++++++|++|++ ++.++++| +++|+|  ++++|||+||++
T Consensus       235 ~~~~~~~a~a~~~~~~~i~~~~~-~~~~~~~~~~~~g~yg~~~~~~~~~P~~i  286 (327)
T 1y7t_A          235 ASSAASAANAAIEHIRDWALGTP-EGDWVSMAVPSQGEYGIPEGIVYSFPVTA  286 (327)
T ss_dssp             SCCHHHHHHHHHHHHHHHHTBCC-TTCCEEEEEECSSGGGCCTTSEEEEEEEE
T ss_pred             CCchHHHHHHHHHHHHHHHcCCC-CCeEEEEEEEecCccCCCCCeEEEEEEEE
Confidence            4544 578899999999999863 45699988 578888  589999999998

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=1.5e-38  Score=307.57  Aligned_cols=257  Identities=14%  Similarity=0.160  Sum_probs=199.2

Q ss_pred             CceEEEEcCCCCh-HHHHHHHHHh--CCC-CCEEEEEecCC--cccH-HHHhccc-----cCCCcEEEEecCCccccccC
Q 022263           28 DRKVAVLGAAGGI-GQPLALLMKL--NPL-VSRLALYDIAN--TPGV-AADVGHI-----NTRSEVAGYMGNDQLGQALE   95 (300)
Q Consensus        28 ~~KI~IIGaaG~V-G~~~a~~L~~--~~~-~~el~L~D~~~--~~g~-~~dl~~~-----~~~~~v~~~~~t~d~~~a~~   95 (300)
                      +|||+|||| |++ |..++..|+.  .++ .+||+|+|+++  .+.+ ..|+.+.     ..+..++.   |+|++++++
T Consensus         7 ~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~---t~D~~eal~   82 (450)
T 1s6y_A            7 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL---TLDRRRALD   82 (450)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE---ESCHHHHHT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEE---eCCHHHHhC
Confidence            479999996 988 7777766776  566 68999999976  4322 2233322     22334443   468878999


Q ss_pred             CCCEEEEcCCCCCCCCCcchhh--------------------hhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHH
Q 022263           96 DSDVVIIPAGVPRKPGMTRDDL--------------------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA  155 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~dl--------------------~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~  155 (300)
                      |||+||+++|.+++||++|+++                    +.+|+++++++++.|+++||+||+|++|||+|    ++
T Consensus        83 gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvd----iv  158 (450)
T 1s6y_A           83 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAG----MV  158 (450)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HH
T ss_pred             CCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH----HH
Confidence            9999999999999999988754                    78999999999999999999999999999999    56


Q ss_pred             HHHHHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEEe-----------cCCCCceeeccCcCcCC-----
Q 022263          156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-----------GHAGITILPLFSQATPK-----  219 (300)
Q Consensus       156 ~~~~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G-----------~h~g~t~vp~~S~~~~~-----  219 (300)
                      |+++++.+  |++||||+|... .|+++++|+.+|+++++|+++++|           +| |++++|.||.....     
T Consensus       159 T~a~~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~v~~~-G~d~~p~~~~~~~~~~~~g  234 (450)
T 1s6y_A          159 TEAVLRYT--KQEKVVGLCNVP-IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLD-GVEVTEKVIDLVAHPDRSG  234 (450)
T ss_dssp             HHHHHHHC--CCCCEEECCSHH-HHHHHHHHHHHTSCGGGEEEEEEEETTEEEEEEEEET-TEECHHHHHHHHSCC----
T ss_pred             HHHHHHhC--CCCCEEEeCCcH-HHHHHHHHHHhCCCHHHcEEEEEeeecceeEEEeeeC-CcCchHhHHHHHhhhcccc
Confidence            66666653  778999998654 499999999999999999999999           89 68999999874321     


Q ss_pred             --------CCCC---------------------HH-------------HHHHHHHHHhchhhhhh-----hhccC---CC
Q 022263          220 --------ANLA---------------------DE-------------DIKALTKRTQDGGTEVV-----EAKAG---KG  249 (300)
Q Consensus       220 --------~~~~---------------------~~-------------~~~~i~~~v~~~g~~i~-----~~~~g---kg  249 (300)
                              ..+.                     ++             .+.++.+++++++++|+     +.| +   ++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~g~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~~~~~~~k-~~~~~~  313 (450)
T 1s6y_A          235 VTMKNIVDLGWEPDFLKGLKVLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIK-PPQLEK  313 (450)
T ss_dssp             --------CCCCHHHHHHHCSBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC------------
T ss_pred             ccccccccCccHHHHHHhcCCccchhhhhhcCCHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhccccc-cchhhc
Confidence                    0111                     11             12256778888999999     422 1   01


Q ss_pred             CCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC---CCcCEEEEeEEecC
Q 022263          250 SATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV---TELPFFASKRAWKN  300 (300)
Q Consensus       250 ~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~---~~~~~~S~Pv~lg~  300 (300)
                      .+++++|.+++++++||++|   ++.+++++ +.+|++   |.++|++.||++|+
T Consensus       314 ~~~~~~~~~a~~ii~AI~~d---~~~~~~vsv~n~G~i~~lp~d~~vevP~vvg~  365 (450)
T 1s6y_A          314 RGGAYYSDAACSLISSIYND---KRDIQPVNTRNNGAIASISAESAVEVNCVITK  365 (450)
T ss_dssp             CCSCCHHHHHHHHHHHHHHT---CCCEEEEEEECTTSBTTSCTTSEEEEEEEEET
T ss_pred             ccchHHHHHHHHHHHHHHcC---CCeEEEEEeecCceecCCCCCeEEEEeEEEcC
Confidence            34568889999999999998   67899988 468876   58999999999985

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=100.00  E-value=2.6e-38  Score=303.22  Aligned_cols=255  Identities=14%  Similarity=0.131  Sum_probs=196.2

Q ss_pred             CceEEEEcCCCChHHHHH--HHHHh--CCC-CCEEEEEecCCccc-HHHHhccccCCCcEEEEecCCccccccCCCCEEE
Q 022263           28 DRKVAVLGAAGGIGQPLA--LLMKL--NPL-VSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a--~~L~~--~~~-~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      +|||+|||| |++ .+..  ..|+.  .++ .+||+|+|+++.+. .+.|+.+.......+.. +++|++++++|||+||
T Consensus         2 ~~KI~IIGa-G~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~-~t~d~~~al~~AD~Vi   78 (417)
T 1up7_A            2 HMRIAVIGG-GSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVL-ISDTFEGAVVDAKYVI   78 (417)
T ss_dssp             CCEEEEETT-TCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEE-ECSSHHHHHTTCSEEE
T ss_pred             CCEEEEECC-CHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEE-EeCCHHHHhCCCCEEE
Confidence            589999996 886 3332  34455  677 78999999976321 24555553211113322 3568878999999999


Q ss_pred             EcCCCCCCCCCcchh-------h-------------hhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHH
Q 022263          102 IPAGVPRKPGMTRDD-------L-------------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKK  161 (300)
Q Consensus       102 i~ag~~~~~g~~r~d-------l-------------~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~  161 (300)
                      +++|++++|+++|++       +             +.+|+++++++++.|+++| |||+|++|||+|    ++|+++++
T Consensus        79 itagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPvd----i~t~a~~k  153 (417)
T 1up7_A           79 FQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPSG----HITEFVRN  153 (417)
T ss_dssp             ECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSHH----HHHHHHHH
T ss_pred             EcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChHH----HHHHHHHH
Confidence            999999999998843       2             4799999999999999999 999999999999    66666666


Q ss_pred             hCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEEe-----------cCCCCceeeccCcC---cCCC----CC-
Q 022263          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-----------GHAGITILPLFSQA---TPKA----NL-  222 (300)
Q Consensus       162 ~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G-----------~h~g~t~vp~~S~~---~~~~----~~-  222 (300)
                      .+  |++|+||+|..- .|+++++|+.+|+++++|+++++|           +| |++++|.||..   ++..    .+ 
T Consensus       154 ~~--p~~rviG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~~~~h-G~d~~p~~~~~~~~~~~~~~~~~~~  229 (417)
T 1up7_A          154 YL--EYEKFIGLCNVP-INFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVK-GEDVTEKVFENLKLKLSNIPDEDFP  229 (417)
T ss_dssp             TT--CCSSEEECCSHH-HHHHHHHHHHTTCCGGGEEEEEEEETTEEEEEEEEET-TEECHHHHHHHHTTC---CCTTSCC
T ss_pred             hC--CCCCEEEeCCCH-HHHHHHHHHHhCCCHHHCeEEEEeecceeeEEEeecC-CcEehhhHHHHHHHhhCCCcCCchH
Confidence            53  778999998543 499999999999999999999999           99 68999999985   3211    22 


Q ss_pred             --------------------CHHHHHHH---------HHHHhchhhhhh--------hhccCCCCCccchHHHHHHHHHH
Q 022263          223 --------------------ADEDIKAL---------TKRTQDGGTEVV--------EAKAGKGSATLSMAYAGAIFADA  265 (300)
Q Consensus       223 --------------------~~~~~~~i---------~~~v~~~g~~i~--------~~~~gkg~t~~~~A~a~~~~i~a  265 (300)
                                          .++.++++         .+++++++++++        ++. +||+|  ++|.+++++++|
T Consensus       230 ~~~~~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l~-~kg~t--~~~~~a~~ii~A  306 (417)
T 1up7_A          230 TWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELT-KRGGS--MYSTAAAHLIRD  306 (417)
T ss_dssp             HHHHHHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGG-GSTTT--THHHHHHHHHHH
T ss_pred             HHHHHhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhhh-hcCCc--HHHHHHHHHHHH
Confidence                                12333444         577888899998        332 46777  558999999999


Q ss_pred             HHccCCCCCCceeee-eeeCCC---CCcCEEEEeEEecC
Q 022263          266 CLKGLNGVPDVVECS-FVQSTV---TELPFFASKRAWKN  300 (300)
Q Consensus       266 i~~~~~~~~~v~~~s-~v~~~~---~~~~~~S~Pv~lg~  300 (300)
                      |++|   ++.+++++ +.+|+|   |.++|++.||++|+
T Consensus       307 I~~d---~~~~~~vsv~n~G~i~~lp~d~~vevP~~vg~  342 (417)
T 1up7_A          307 LETD---EGKIHIVNTRNNGSIENLPDDYVLEIPCYVRS  342 (417)
T ss_dssp             HHSS---SCEEEEEEEECTTSSTTSCTTCEEEEEEEEET
T ss_pred             HHcC---CCeEEEEEEecCCccCCCCCCeEEEEeEEEeC
Confidence            9997   67899988 568876   48999999999985

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=100.00  E-value=1.5e-36  Score=280.99  Aligned_cols=261  Identities=26%  Similarity=0.408  Sum_probs=215.9

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC-CcEEEEecCCccccccCCCCEEEE
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      +++|||+|||| |.+|++++..|+..++.++|+|+|+++  .++.++|+.+.... ...+... ++++ +++++||+||+
T Consensus         5 ~~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~-~~~~~aD~Vii   81 (319)
T 1lld_A            5 VKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDG-SDDP-EICRDADMVVI   81 (319)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEE-ESCG-GGGTTCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEe-CCCH-HHhCCCCEEEE
Confidence            35689999996 999999999999998888999999975  34456776664311 1222222 2354 68999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eehhHHHH
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~Lds~R~  181 (300)
                      +++.++++|++|.|++.+|+++++++++.+++++|++++++++||++.+++    +.++.+.+|+++|+|. |.+|+.|+
T Consensus        82 ~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~~~~~----~~~~~~~~~~~~vig~~~~l~~~r~  157 (319)
T 1lld_A           82 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATH----VAQKLTGLPENQIFGSGTNLDSARL  157 (319)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHH----HHHHHHTCCTTSEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchHHHHH----HHHHhcCCCHHHEeeccccHhHHHH
Confidence            999999999999999999999999999999999999999999999995443    3333334999999999 89999999


Q ss_pred             HHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----C---------CCHHHHHHHHHHHhchhhhhhhhccCC
Q 022263          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----N---------LADEDIKALTKRTQDGGTEVVEAKAGK  248 (300)
Q Consensus       182 ~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----~---------~~~~~~~~i~~~v~~~g~~i~~~~~gk  248 (300)
                      +..+++++++++.+++.+++|+| |++++|+||++.+..    .         .+++.++++.+++++.+++|++.   +
T Consensus       158 ~~~~a~~~~v~~~~v~~~~~G~~-g~~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~---~  233 (319)
T 1lld_A          158 RFLIAQQTGVNVKNVHAYIAGEH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIING---K  233 (319)
T ss_dssp             HHHHHHHHTCCGGGEECCEEBSS-STTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHTS---C
T ss_pred             HHHHHHHhCCCHHHeEEEEEeCC-CCceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhhC---C
Confidence            99999999999999999999999 579999999986531    1         23344788999999999999984   5


Q ss_pred             CCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          249 GSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       249 g~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      |++.|++|.+.++++++|++|   .+.++++| +++|.+. .+.+++.||.+++
T Consensus       234 G~~~~~~a~~~~sm~~di~~~---~~~ei~~s~~~~G~~~~~~~~~gvp~~~~~  284 (319)
T 1lld_A          234 GATNYAIGMSGVDIIEAVLHD---TNRILPVSSMLKDFHGISDICMSVPTLLNR  284 (319)
T ss_dssp             CSCCHHHHHHHHHHHHHHHTT---CCEEEEEEEECSSBTTBCSSEEEEEEEEET
T ss_pred             CCchHHHHHHHHHHHHHHHcC---CCcEEEEEEEecCcCCccceEEEEEEEEeC
Confidence            788999999999999999997   46778887 7888884 5899999999874

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=4.2e-37  Score=298.72  Aligned_cols=257  Identities=16%  Similarity=0.173  Sum_probs=192.2

Q ss_pred             CceEEEEcCCCCh-HHHHHHHHHhC--CC-CCEEEEEecCCc--ccHHHHhcccc-----CCCcEEEEecCCccccccCC
Q 022263           28 DRKVAVLGAAGGI-GQPLALLMKLN--PL-VSRLALYDIANT--PGVAADVGHIN-----TRSEVAGYMGNDQLGQALED   96 (300)
Q Consensus        28 ~~KI~IIGaaG~V-G~~~a~~L~~~--~~-~~el~L~D~~~~--~g~~~dl~~~~-----~~~~v~~~~~t~d~~~a~~~   96 (300)
                      ++||+|||| |++ |..++..|+.+  ++ ..||+|+|+++.  ++ ..|+.+..     .+..++.   ++|++++++|
T Consensus        28 ~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~-~~~~~~~~l~~~~~~~~I~~---t~D~~eal~~  102 (472)
T 1u8x_X           28 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDR-IAGACDVFIREKAPDIEFAA---TTDPEEAFTD  102 (472)
T ss_dssp             CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHH-HHHHHHHHHHHHCTTSEEEE---ESCHHHHHSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHH-HHHHHHHHhccCCCCCEEEE---ECCHHHHHcC
Confidence            359999996 998 55577777776  67 679999999763  22 23444322     2334543   4688889999


Q ss_pred             CCEEEEcCCCCCCCCCcchhh--------------------hhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHH
Q 022263           97 SDVVIIPAGVPRKPGMTRDDL--------------------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA  156 (300)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~dl--------------------~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~  156 (300)
                      ||+||++++.+++++++|+++                    +.+|+++++++++.|+++||+||+|++|||+|    ++|
T Consensus       103 AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvd----i~T  178 (472)
T 1u8x_X          103 VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAA----IVA  178 (472)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHH----HHH
T ss_pred             CCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH----HHH
Confidence            999999999998888888554                    78999999999999999999999999999999    566


Q ss_pred             HHHHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCC-CceEEEEEe-----------c-CCCCceeeccCcCcC--C--
Q 022263          157 EVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV-AEVNVPVVG-----------G-HAGITILPLFSQATP--K--  219 (300)
Q Consensus       157 ~~~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~-~~V~~~v~G-----------~-h~g~t~vp~~S~~~~--~--  219 (300)
                      +++++.+  |++||||+|... .|+++++|+.+|+++ ++|+++++|           + | |++++|.||....  +  
T Consensus       179 ~~~~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~~v~~~v~GlNH~~W~~~~~~~h-G~d~~p~~~~~~~~~g~~  254 (472)
T 1u8x_X          179 EATRRLR--PNSKILNICDMP-VGIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQE-GNDLMPKLKEHVSQYGYI  254 (472)
T ss_dssp             HHHHHHS--TTCCEEECCSHH-HHHHHHHHHHHTCSCGGGEEEEEEEETTEEEEEEEEETT-CCBCHHHHHHHHHHHSSC
T ss_pred             HHHHHhC--CCCCEEEeCCcH-HHHHHHHHHHhCcCchhceeEEEeccchhhheeeeEeCC-CCEehHhHHHHHHhcCCC
Confidence            6666653  788999998654 499999999999998 999999999           8 8 6899999987421  0  


Q ss_pred             ---------CCCCHHH------------------------HHHHHHH----------Hhc-hhhhhhhhc-cC--CC---
Q 022263          220 ---------ANLADED------------------------IKALTKR----------TQD-GGTEVVEAK-AG--KG---  249 (300)
Q Consensus       220 ---------~~~~~~~------------------------~~~i~~~----------v~~-~g~~i~~~~-~g--kg---  249 (300)
                               ..+..+.                        .+++.++          +++ .+.+++++. .+  |+   
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~Yl~yy~~~~~~~e~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~  334 (472)
T 1u8x_X          255 PKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSSE  334 (472)
T ss_dssp             CCC-------CTTSHHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHHHHTSCC
T ss_pred             ccccccccccchHHHHHhhcCccccccccCCccchhcccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcCCcc
Confidence                     0011000                        0222222          222 223333211 02  34   


Q ss_pred             CCcc---chHHHHHHHHHHHHccCCCCCCceeee-eeeCCC---CCcCEEEEeEEecC
Q 022263          250 SATL---SMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV---TELPFFASKRAWKN  300 (300)
Q Consensus       250 ~t~~---~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~---~~~~~~S~Pv~lg~  300 (300)
                      ++.|   ++|.+++++++||++|   ++.+++++ +.+|.+   |.++|++.||++|+
T Consensus       335 ~~~~~~~~~~~~a~~ii~AI~~d---~~~v~~vsv~n~G~i~glp~d~~veVP~vvg~  389 (472)
T 1u8x_X          335 NSEIKIDDHASYIVDLARAIAYN---TGERMLLIVENNGAIANFDPTAMVEVPCIVGS  389 (472)
T ss_dssp             SCSSCCCTTTHHHHHHHHHHHHT---CCEEEEEEEECTTSBTTSCTTSEEEEEEEEET
T ss_pred             cccccccHHHHHHHHHHHHHhcC---CCeEEEEEeecCceecCcCCCeEEEEeEEEcC
Confidence            4455   9999999999999998   67899988 468876   58999999999985

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=99.96  E-value=3.1e-28  Score=234.79  Aligned_cols=174  Identities=22%  Similarity=0.356  Sum_probs=134.6

Q ss_pred             CCceEEEEcCCCChH--HHHHHHHHhCC-CCCEEEEEecCCcc----cHHHHhccccCCCcEEEEecCCccccccCCCCE
Q 022263           27 PDRKVAVLGAAGGIG--QPLALLMKLNP-LVSRLALYDIANTP----GVAADVGHINTRSEVAGYMGNDQLGQALEDSDV   99 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG--~~~a~~L~~~~-~~~el~L~D~~~~~----g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDi   99 (300)
                      +.|||+|||| |++|  ..++..|+... +.++|+|+|+++.+    ....+.... .  ..+. ..|+|+++|++|||+
T Consensus         4 ~~~KIaVIGa-Gs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~~~~~l~~-~--~~~I-~~TtD~~eAl~dADf   78 (450)
T 3fef_A            4 DQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGN-G--RWRY-EAVSTLKKALSAADI   78 (450)
T ss_dssp             CCEEEEEETT-TCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHTTSTT-S--CEEE-EEESSHHHHHTTCSE
T ss_pred             CCCEEEEECC-ChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHHHHHHHhc-c--CCeE-EEECCHHHHhcCCCE
Confidence            3579999996 9985  56776676543 34699999997532    112221111 2  2332 236799899999999


Q ss_pred             EEEcCC------------CCCCCCCcch--hhhh--------hhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHH
Q 022263          100 VIIPAG------------VPRKPGMTRD--DLFN--------INAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE  157 (300)
Q Consensus       100 VIi~ag------------~~~~~g~~r~--dl~~--------~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~  157 (300)
                      ||+++.            .|+|+|+.|.  |...        +|+++++++++.|+++||+||+|++|||+|    ++|+
T Consensus        79 VI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvd----i~t~  154 (450)
T 3fef_A           79 VIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMS----VCTR  154 (450)
T ss_dssp             EEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH----HHHH
T ss_pred             EEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchH----HHHH
Confidence            999985            5899999887  7766        999999999999999999999999999999    5555


Q ss_pred             HHHHhCCCCCCcEEEeeehhHHHHHHHHHHHc----C---CCCCceEEEEEe-cCCCCceeeccCcCc
Q 022263          158 VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKA----N---VNVAEVNVPVVG-GHAGITILPLFSQAT  217 (300)
Q Consensus       158 ~~~~~~~~~~~kviG~t~Lds~R~~~~la~~l----~---v~~~~V~~~v~G-~h~g~t~vp~~S~~~  217 (300)
                      ++++.  +|+.|+||+|+.- .++++.+|+.|    |   +++++|+..+.| ||     +.+|+.++
T Consensus       155 ~~~k~--~p~~rviG~C~~~-~~~~~~~a~~l~~~lg~~~~~~~~v~~~~~GlNH-----~~w~~~~~  214 (450)
T 3fef_A          155 VLYKV--FPGIKAIGCCHEV-FGTQKLLAEMVTERLGIEVPRREDIRVNVLGINH-----FTWITKAS  214 (450)
T ss_dssp             HHHHH--CTTCEEEECCSHH-HHHHHHHHHHHHHHHCCCCSCGGGEEEEEEEETT-----EEEEEEEE
T ss_pred             HHHHH--CCCCCEEEeCCcH-HHHHHHHHHHHHhhcCCCCCChhHeEEEEeeecC-----eEeEEEEE
Confidence            55543  7899999999765 78999999999    5   779999999999 88     45555554

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=99.93  E-value=9.9e-26  Score=218.89  Aligned_cols=164  Identities=21%  Similarity=0.191  Sum_probs=125.8

Q ss_pred             CceEEEEcCCCChHHHH--HHHHHh-CCC-CCEEEEEecCCcccH-HHHhccc-----cCCCcEEEEecCCccccccCCC
Q 022263           28 DRKVAVLGAAGGIGQPL--ALLMKL-NPL-VSRLALYDIANTPGV-AADVGHI-----NTRSEVAGYMGNDQLGQALEDS   97 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~--a~~L~~-~~~-~~el~L~D~~~~~g~-~~dl~~~-----~~~~~v~~~~~t~d~~~a~~~a   97 (300)
                      +|||+|||| |+||++.  +..|++ .++ ..||+|+|+++.+.. +.++.+.     ..+..++.   |+|++++++||
T Consensus         3 ~~KIaVIGA-GsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~---ttD~~eal~dA   78 (480)
T 1obb_A            3 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEK---TMNLDDVIIDA   78 (480)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEE---ESCHHHHHTTC
T ss_pred             CCEEEEECC-CchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEE---ECCHHHHhCCC
Confidence            579999996 9987554  557764 344 469999999763211 2222221     12334443   46887899999


Q ss_pred             CEEEEcCCC------------CCCCCCcc--hh------------hhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCccc
Q 022263           98 DVVIIPAGV------------PRKPGMTR--DD------------LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST  151 (300)
Q Consensus        98 DiVIi~ag~------------~~~~g~~r--~d------------l~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~  151 (300)
                      |+||++++.            |+|+|+.|  .|            ++.+|+++++++++.|+++||+||+|++|||+|  
T Consensus        79 D~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvd--  156 (480)
T 1obb_A           79 DFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIF--  156 (480)
T ss_dssp             SEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHH--
T ss_pred             CEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH--
Confidence            999999986            55667655  44            478999999999999999999999999999999  


Q ss_pred             HHHHHHHHHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEEe-cC
Q 022263          152 VPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GH  204 (300)
Q Consensus       152 ~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G-~h  204 (300)
                        ++|+++++   +|++||||+|.++. ++++++ +.+|+++++|+++|+| +|
T Consensus       157 --i~t~~~~k---~p~~rviG~c~~~~-~~~~~l-~~lgv~~~~v~~~v~GlNH  203 (480)
T 1obb_A          157 --EGTTLVTR---TVPIKAVGFCHGHY-GVMEIV-EKLGLEEEKVDWQVAGVNH  203 (480)
T ss_dssp             --HHHHHHHH---HSCSEEEEECSGGG-HHHHHH-HHTTCCGGGEEEEEEEETT
T ss_pred             --HHHHHHHH---CCCCcEEecCCCHH-HHHHHH-HHhCCCHHHceEEEEeecc
Confidence              56666665   78999999985443 378999 9999999999999999 44

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=99.93  E-value=6.8e-25  Score=213.52  Aligned_cols=165  Identities=18%  Similarity=0.177  Sum_probs=124.1

Q ss_pred             ceEEEEcCCCChHHHHH--HHHHhCC----CCCEEEEEecCC--cccHHHHhccccC--CCcEEEEecCCccccccCCCC
Q 022263           29 RKVAVLGAAGGIGQPLA--LLMKLNP----LVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSD   98 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a--~~L~~~~----~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~a~~~aD   98 (300)
                      |||+|||| |++|++..  ..++...    ...||+|+|+++  .++...++++...  ...++.. .|+|+++|++|||
T Consensus         1 mKI~iIGa-Gs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~-~t~d~~eAl~gAD   78 (477)
T 3u95_A            1 MKISIVGA-GSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVV-KTESLDEAIEGAD   78 (477)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEE-EESCHHHHHTTCS
T ss_pred             CEEEEECC-CchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEE-EeCCHHHHhCCCC
Confidence            79999996 99997743  2344432    235999999976  3455556665431  1223332 3678999999999


Q ss_pred             EEEEcCCC-------------------CCCCCCcchhhhh---------------hhHHHHHHHHHHHHhhCCCeEEEEe
Q 022263           99 VVIIPAGV-------------------PRKPGMTRDDLFN---------------INAGIVKDLCSAIAKYCPNAIVNMI  144 (300)
Q Consensus        99 iVIi~ag~-------------------~~~~g~~r~dl~~---------------~N~~i~~~i~~~i~~~~p~a~viv~  144 (300)
                      +||+++|.                   |+|+|++|.++.+               +|++++.++++.|+++|||||+|++
T Consensus        79 ~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P~A~~in~  158 (477)
T 3u95_A           79 FIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAPKAYLMQT  158 (477)
T ss_dssp             EEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             EEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Confidence            99999975                   4578888877643               4899999999999999999999999


Q ss_pred             cCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEEecC
Q 022263          145 SNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGH  204 (300)
Q Consensus       145 tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G~h  204 (300)
                      |||++    ++|+++.+.   +..|++|+|+--.  ....+++.||+++++|+..+.|-|
T Consensus       159 tNP~~----i~t~a~~~~---~~~k~vGlC~~~~--~~~~~~~~Lg~~~~~v~~~~~GlN  209 (477)
T 3u95_A          159 ANPVF----EITQAVRRW---TGANIIGFCHGVA--GVYEVFERLGLDPEEVDWQVAGVN  209 (477)
T ss_dssp             SSCHH----HHHHHHHHH---HCCCEEEECCGGG--HHHHHHHHTTCCGGGEEEEEEEET
T ss_pred             cChHH----HHHHHHHHh---CCCCeEEECCCHH--HHHHHHHHhCCCHHHcEEEEeecC
Confidence            99999    555555553   3569999996333  345677889999999999999955

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.82  E-value=4.4e-09  Score=97.02  Aligned_cols=118  Identities=16%  Similarity=0.236  Sum_probs=86.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccH--H---H-Hhcccc-C----C-----CcEEEEecCCc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV--A---A-DVGHIN-T----R-----SEVAGYMGNDQ   89 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~--~---~-dl~~~~-~----~-----~~v~~~~~t~d   89 (300)
                      .||+|||| |.+|+.+|..++..|+  +++|+|+++.   ++.  .   + .+.... .    .     ..++.   ++|
T Consensus         7 ~~VaViGa-G~MG~giA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~---~~~   80 (319)
T 3ado_A            7 GDVLIVGS-GLVGRSWAMLFASGGF--RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS---CTN   80 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE---ECC
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc---ccc
Confidence            48999996 9999999999999998  9999999652   111  0   1 111110 0    0     12333   468


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022263           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (300)
Q Consensus        90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~  168 (300)
                      +++++++||+||.++              .+|.++.+++..+|.++++ ++++  .||.+...   ++++....  -.|+
T Consensus        81 l~~a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~aIl--aSNTSsl~---is~ia~~~--~~p~  139 (319)
T 3ado_A           81 LAEAVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDRVVL--SSSSSCLL---PSKLFTGL--AHVK  139 (319)
T ss_dssp             HHHHTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSSSEE--EECCSSCC---HHHHHTTC--TTGG
T ss_pred             hHhHhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhccee--ehhhhhcc---chhhhhhc--cCCC
Confidence            888999999999984              5789999999999999996 7765  89998863   45554433  3478


Q ss_pred             cEEEe
Q 022263          169 KLFGV  173 (300)
Q Consensus       169 kviG~  173 (300)
                      |++|+
T Consensus       140 r~ig~  144 (319)
T 3ado_A          140 QCIVA  144 (319)
T ss_dssp             GEEEE
T ss_pred             cEEEe
Confidence            99998

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.75  E-value=5.1e-08  Score=99.29  Aligned_cols=122  Identities=13%  Similarity=0.233  Sum_probs=86.2

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccH--H---HH-------hcccc-CCCcEEEEecC
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV--A---AD-------VGHIN-TRSEVAGYMGN   87 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~--~---~d-------l~~~~-~~~~v~~~~~t   87 (300)
                      ...+..||+|||| |.+|+.+|..+++.|+  +++|+|+++.   ++.  .   ++       +.... ....++.   +
T Consensus       312 ~~~~i~~v~ViGa-G~MG~gIA~~~a~aG~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~---~  385 (742)
T 3zwc_A          312 SAQPVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF---S  385 (742)
T ss_dssp             CCCCCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE---E
T ss_pred             CcccccEEEEEcc-cHHHHHHHHHHHhCCC--chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcc---c
Confidence            3344569999996 9999999999999999  9999999752   111  0   00       00000 1123332   3


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCC
Q 022263           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (300)
Q Consensus        88 ~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~  166 (300)
                      +++ +++++||+||.++              .+|.++.+++..++.++++ ++++  .||.+..-   ++++...+  -.
T Consensus       386 ~~~-~~l~~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~aIl--ASNTSsl~---i~~ia~~~--~~  443 (742)
T 3zwc_A          386 SST-KELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGAFL--CTNTSALN---VDDIASST--DR  443 (742)
T ss_dssp             SCG-GGGGSCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTCEE--EECCSSSC---HHHHHTTS--SC
T ss_pred             CcH-HHHhhCCEEEEec--------------cccHHHHHHHHHHHhhcCCCCceE--EecCCcCC---hHHHHhhc--CC
Confidence            455 6799999999984              5789999999999999985 7765  89988753   44544433  34


Q ss_pred             CCcEEEe
Q 022263          167 EKKLFGV  173 (300)
Q Consensus       167 ~~kviG~  173 (300)
                      |+|++|+
T Consensus       444 p~r~ig~  450 (742)
T 3zwc_A          444 PQLVIGT  450 (742)
T ss_dssp             GGGEEEE
T ss_pred             ccccccc
Confidence            7899997

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.55  E-value=6.9e-07  Score=86.20  Aligned_cols=121  Identities=15%  Similarity=0.247  Sum_probs=80.3

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHH-----HH-hcccc---------CCCcEEEEecCCc
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-----AD-VGHIN---------TRSEVAGYMGNDQ   89 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~-----~d-l~~~~---------~~~~v~~~~~t~d   89 (300)
                      ..+.+||+|||+ |.||..+|..|++.|+  +|+++|+++.++..     ++ +....         ....++.   ++|
T Consensus        51 ~~~i~kVaVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~---t~d  124 (460)
T 3k6j_A           51 AYDVNSVAIIGG-GTMGKAMAICFGLAGI--ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKI---TSD  124 (460)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE---ESC
T ss_pred             cccCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE---eCC
Confidence            345679999996 9999999999999998  99999997642211     11 11100         0123443   356


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022263           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (300)
Q Consensus        90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~  168 (300)
                      + +++++||+||.++              .++..+.+++.+++.++++ ++++  +||.+..-   ++++.....  .|+
T Consensus       125 l-~al~~aDlVIeAV--------------pe~~~vk~~v~~~l~~~~~~~aIl--asnTSsl~---i~~ia~~~~--~p~  182 (460)
T 3k6j_A          125 F-HKLSNCDLIVESV--------------IEDMKLKKELFANLENICKSTCIF--GTNTSSLD---LNEISSVLR--DPS  182 (460)
T ss_dssp             G-GGCTTCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTCEE--EECCSSSC---HHHHHTTSS--SGG
T ss_pred             H-HHHccCCEEEEcC--------------CCCHHHHHHHHHHHHhhCCCCCEE--EecCCChh---HHHHHHhcc--CCc
Confidence            6 5899999999985              2466778888888998875 6765  56655431   234333222  356


Q ss_pred             cEEEe
Q 022263          169 KLFGV  173 (300)
Q Consensus       169 kviG~  173 (300)
                      +++|+
T Consensus       183 r~iG~  187 (460)
T 3k6j_A          183 NLVGI  187 (460)
T ss_dssp             GEEEE
T ss_pred             ceEEE
Confidence            78887

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.52  E-value=1.9e-07  Score=84.40  Aligned_cols=120  Identities=21%  Similarity=0.335  Sum_probs=75.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HH-Hhcc----------ccC-------CCcEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AA-DVGH----------INT-------RSEVAGYMGND   88 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~-dl~~----------~~~-------~~~v~~~~~t~   88 (300)
                      ++||+|||+ |.+|+.+|..++..|+  +|+++|+++.... .. .+.+          ...       ...+..   ++
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~---~~   77 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTAFHGF--AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY---SD   77 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE---ES
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE---eC
Confidence            469999996 9999999999999998  9999999753111 11 1100          000       012332   35


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022263           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (300)
Q Consensus        89 d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~  167 (300)
                      ++++++++||+||+++.              .+.++.+++.+++.++++ ++++  +||.....   ++++.....  .+
T Consensus        78 ~~~~~~~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~il--~s~tS~~~---~~~la~~~~--~~  136 (283)
T 4e12_A           78 DLAQAVKDADLVIEAVP--------------ESLDLKRDIYTKLGELAPAKTIF--ATNSSTLL---PSDLVGYTG--RG  136 (283)
T ss_dssp             CHHHHTTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSC---HHHHHHHHS--CG
T ss_pred             CHHHHhccCCEEEEecc--------------CcHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHhhcC--CC
Confidence            77778999999999853              345667777788888774 6665  44443321   233333332  24


Q ss_pred             CcEEEee
Q 022263          168 KKLFGVT  174 (300)
Q Consensus       168 ~kviG~t  174 (300)
                      .+++|+.
T Consensus       137 ~~~ig~h  143 (283)
T 4e12_A          137 DKFLALH  143 (283)
T ss_dssp             GGEEEEE
T ss_pred             cceEEEc
Confidence            5777763

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=98.49  E-value=4.2e-07  Score=82.22  Aligned_cols=162  Identities=16%  Similarity=0.151  Sum_probs=96.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec---CCccccccCCCCEEEEcC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG---NDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~---t~d~~~a~~~aDiVIi~a  104 (300)
                      +|||.|+||+|++|++++..|...+.  +|+.+++......   +..      +..+.+   ..++.++++++|+||++|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~---~~~------~~~~~~Dl~~~~~~~~~~~~d~Vih~a   70 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN--TPIILTRSIGNKA---IND------YEYRVSDYTLEDLINQLNDVDAVVHLA   70 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCC--------C------CEEEECCCCHHHHHHHTTTCSEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCCccc---CCc------eEEEEccccHHHHHHhhcCCCEEEEcc
Confidence            46999999999999999999999887  8999998632111   221      111111   124557789999999999


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHHHH
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTF  184 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~~~  184 (300)
                      +.....  +..+.+..|+...+.+++.+.+.+..-+ |.+|. ..+...--...+.+.....+....|.+.+...++...
T Consensus        71 ~~~~~~--~~~~~~~~n~~~~~~ll~a~~~~~~~r~-v~~SS-~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~  146 (311)
T 3m2p_A           71 ATRGSQ--GKISEFHDNEILTQNLYDACYENNISNI-VYAST-ISAYSDETSLPWNEKELPLPDLMYGVSKLACEHIGNI  146 (311)
T ss_dssp             CCCCSS--SCGGGTHHHHHHHHHHHHHHHHTTCCEE-EEEEE-GGGCCCGGGCSBCTTSCCCCSSHHHHHHHHHHHHHHH
T ss_pred             ccCCCC--ChHHHHHHHHHHHHHHHHHHHHcCCCEE-EEEcc-HHHhCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Confidence            875433  4455678899999999999988765534 33432 1100000000000000012233334444444555556


Q ss_pred             HHHHcCCCCCceE-EEEEecC
Q 022263          185 YAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       185 la~~l~v~~~~V~-~~v~G~h  204 (300)
                      +++..+++..-++ ..++|..
T Consensus       147 ~~~~~g~~~~ilRp~~v~G~~  167 (311)
T 3m2p_A          147 YSRKKGLCIKNLRFAHLYGFN  167 (311)
T ss_dssp             HHHHSCCEEEEEEECEEECSC
T ss_pred             HHHHcCCCEEEEeeCceeCcC
Confidence            6666777666665 4577765

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.48  E-value=6e-07  Score=81.62  Aligned_cols=100  Identities=19%  Similarity=0.239  Sum_probs=66.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HH-------H-h-ccccC-------------CCcEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AA-------D-V-GHINT-------------RSEVAG   83 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~-------d-l-~~~~~-------------~~~v~~   83 (300)
                      +++||+|||+ |.+|..+|..|+..|+  +|+++|+++.... ..       + + .....             ...++.
T Consensus        14 ~~~~I~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~   90 (302)
T 1f0y_A           14 IVKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT   90 (302)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE
Confidence            4568999996 9999999999999987  9999999753111 00       0 0 00000             012433


Q ss_pred             EecCCccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCC
Q 022263           84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPV  148 (300)
Q Consensus        84 ~~~t~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~  148 (300)
                         ++|+++++++||+||++.              ..+..+.+++.+.+.++.+ ++++  +||..
T Consensus        91 ---~~~~~~~~~~aD~Vi~av--------------p~~~~~~~~v~~~l~~~~~~~~iv--~s~ts  137 (302)
T 1f0y_A           91 ---STDAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEHTIF--ASNTS  137 (302)
T ss_dssp             ---ESCHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTTCEE--EECCS
T ss_pred             ---ecCHHHhhcCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeEE--EECCC
Confidence               356766899999999985              2344556677778877764 6655  44443

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.45  E-value=1.9e-06  Score=83.25  Aligned_cols=121  Identities=14%  Similarity=0.214  Sum_probs=76.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HHH--------------hccccC-CCcEEEEecCCc
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AAD--------------VGHINT-RSEVAGYMGNDQ   89 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~d--------------l~~~~~-~~~v~~~~~t~d   89 (300)
                      .+++||+|||+ |.||..+|..|+..|+  +|+++|+++.... ..+              +..... ....+.   +++
T Consensus        35 ~~~~kV~VIGa-G~MG~~iA~~la~~G~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i---~~~  108 (463)
T 1zcj_A           35 QPVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF---SSS  108 (463)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE---ESC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh---cCC
Confidence            35679999996 9999999999999998  9999999752111 000              000000 111222   346


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022263           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (300)
Q Consensus        90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~  168 (300)
                      + +++++||+||+++.              ++..+.+++.+++.++++ ++++  +||.+..-   ++++....  -.++
T Consensus       109 ~-~~~~~aDlVIeaVp--------------e~~~~k~~v~~~l~~~~~~~~ii--~snTs~~~---~~~la~~~--~~~~  166 (463)
T 1zcj_A          109 T-KELSTVDLVVEAVF--------------EDMNLKKKVFAELSALCKPGAFL--CTNTSALN---VDDIASST--DRPQ  166 (463)
T ss_dssp             G-GGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSC---HHHHHTTS--SCGG
T ss_pred             H-HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCCcC---HHHHHHHh--cCCc
Confidence            6 67999999999862              356667778888888875 6665  45666542   23333222  1256


Q ss_pred             cEEEee
Q 022263          169 KLFGVT  174 (300)
Q Consensus       169 kviG~t  174 (300)
                      +++|+.
T Consensus       167 ~~ig~h  172 (463)
T 1zcj_A          167 LVIGTH  172 (463)
T ss_dssp             GEEEEE
T ss_pred             ceEEee
Confidence            777763

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=98.45  E-value=5e-07  Score=81.47  Aligned_cols=155  Identities=19%  Similarity=0.143  Sum_probs=95.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec---CCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG---NDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~---t~d~~~a~~~aDiVIi~ag  105 (300)
                      |||.|+||+|++|++++..|+..|.  +|+.+|.......  +..+.    .+..+.+   ..++.+++++ |+||++|+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~----~~~~~~~Dl~d~~~~~~~~~-d~vih~A~   71 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY--EVVVVDNLSSGRR--EFVNP----SAELHVRDLKDYSWGAGIKG-DVVFHFAA   71 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSCCG--GGSCT----TSEEECCCTTSTTTTTTCCC-SEEEECCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCch--hhcCC----CceEEECccccHHHHhhcCC-CEEEECCC
Confidence            6899999999999999999999887  8999988543211  11111    1111111   1124456677 99999998


Q ss_pred             CCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC----------CCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          106 VPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN----------PVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       106 ~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN----------P~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      .+...  ..+....+..|+.....+++.+.+.+..- +|.+|.          |.+.          .. ..++....|.
T Consensus        72 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~-iv~~SS~~vyg~~~~~~~~e----------~~-~~~p~~~Y~~  139 (312)
T 3ko8_A           72 NPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRT-VVFASSSTVYGDADVIPTPE----------EE-PYKPISVYGA  139 (312)
T ss_dssp             SCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCE-EEEEEEGGGGCSCSSSSBCT----------TS-CCCCCSHHHH
T ss_pred             CCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEeCcHHHhCCCCCCCCCC----------CC-CCCCCChHHH
Confidence            64221  12344566789999999999998876543 444432          1110          01 1233333444


Q ss_pred             eehhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                      +.....++...+++..+++..-++ ..++|..
T Consensus       140 sK~~~e~~~~~~~~~~g~~~~~lrp~~v~g~~  171 (312)
T 3ko8_A          140 AKAAGEVMCATYARLFGVRCLAVRYANVVGPR  171 (312)
T ss_dssp             HHHHHHHHHHHHHHHHCCEEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEeeccccCcC
Confidence            444455566667777787766665 4688865

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.45  E-value=7.9e-07  Score=84.41  Aligned_cols=108  Identities=18%  Similarity=0.234  Sum_probs=70.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC--------------CCcEEEEecCCcccccc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--------------RSEVAGYMGNDQLGQAL   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~--------------~~~v~~~~~t~d~~~a~   94 (300)
                      |||+|||+ |.||..++..|++ ++  +|+++|+++.+..  .+.....              ...++.   ++++.+++
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~-G~--~V~~~d~~~~~~~--~l~~~~~~i~e~~l~~~~~~~~~~l~~---t~~~~~~~   71 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL-QN--EVTIVDILPSKVD--KINNGLSPIQDEYIEYYLKSKQLSIKA---TLDSKAAY   71 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TS--EEEEECSCHHHHH--HHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHhC-CC--EEEEEECCHHHHH--HHHcCCCCcCCCCHHHHHHhccCcEEE---eCCHHHHh
Confidence            69999995 9999999999998 76  8999999653222  1221111              112332   34666788


Q ss_pred             CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEE-ecCCCcc
Q 022263           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPVNS  150 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv-~tNP~d~  150 (300)
                      ++||+||++...+..++..+.|+     ..+.+.++.+.+..|+.+++. .|||.++
T Consensus        72 ~~aDvviiavpt~~~~~~~~~dl-----~~v~~v~~~i~~l~~~~iVV~~ST~~~g~  123 (402)
T 1dlj_A           72 KEAELVIIATPTNYNSRINYFDT-----QHVETVIKEVLSVNSHATLIIKSTIPIGF  123 (402)
T ss_dssp             HHCSEEEECCCCCEETTTTEECC-----HHHHHHHHHHHHHCSSCEEEECSCCCTTH
T ss_pred             cCCCEEEEecCCCcccCCCCccH-----HHHHHHHHHHHhhCCCCEEEEeCCCCccH
Confidence            99999999987664333333332     344555555555557777766 6999984

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.45  E-value=8.1e-07  Score=85.63  Aligned_cols=108  Identities=18%  Similarity=0.208  Sum_probs=73.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC----------------CCcEEEEecCCcccc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLGQ   92 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~d~~~   92 (300)
                      |||+|||+ |.||..+|..|+..|+  +|+++|+++.+..  .+.....                ...++.   ++|+++
T Consensus         3 mkI~VIG~-G~vG~~lA~~La~~G~--~V~~~D~~~~~v~--~l~~g~~~i~e~gl~~~l~~~~~~~~l~~---t~d~~e   74 (450)
T 3gg2_A            3 LDIAVVGI-GYVGLVSATCFAELGA--NVRCIDTDRNKIE--QLNSGTIPIYEPGLEKMIARNVKAGRLRF---GTEIEQ   74 (450)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHHTCSCCCSTTHHHHHHHHHHTTSEEE---ESCHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCC--EEEEEECCHHHHH--HHHcCCCcccCCCHHHHHHhhcccCcEEE---ECCHHH
Confidence            79999995 9999999999999988  9999999753222  1221100                113443   457778


Q ss_pred             ccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEe-cCCCcc
Q 022263           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNS  150 (300)
Q Consensus        93 a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~  150 (300)
                      ++++||+||++.+.|.+++.      ..+...++++++.+.++. ++.+++.. |-|.++
T Consensus        75 a~~~aDvViiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt  128 (450)
T 3gg2_A           75 AVPEADIIFIAVGTPAGEDG------SADMSYVLDAARSIGRAMSRYILIVTKSTVPVGS  128 (450)
T ss_dssp             HGGGCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTH
T ss_pred             HHhcCCEEEEEcCCCcccCC------CcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcc
Confidence            89999999999987754432      345566777777787775 45555544 345553

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.44  E-value=5.2e-07  Score=87.68  Aligned_cols=118  Identities=18%  Similarity=0.237  Sum_probs=76.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC---------------CCcEEEEecCCccc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT---------------RSEVAGYMGNDQLG   91 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~---------------~~~v~~~~~t~d~~   91 (300)
                      .+|||+|||+ |.||..+|..|+..+...+|+++|+++.+..  .+.....               ...++.   ++|+.
T Consensus         8 ~~mkI~VIG~-G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~--~l~~g~~~i~e~gl~~~~~~~~~~~l~~---t~~~~   81 (481)
T 2o3j_A            8 KVSKVVCVGA-GYVGGPTCAMIAHKCPHITVTVVDMNTAKIA--EWNSDKLPIYEPGLDEIVFAARGRNLFF---SSDIP   81 (481)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHHHCTTSEEEEECSCHHHHH--HHTSSSCSSCCTTHHHHHHHHBTTTEEE---ESCHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEECCHHHHH--HHHCCCCCcCCCCHHHHHHHhhcCCEEE---ECCHH
Confidence            3579999995 9999999999998732228999998653222  1221100               112333   35666


Q ss_pred             cccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEe-cCCCccc
Q 022263           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMI-SNPVNST  151 (300)
Q Consensus        92 ~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~-tNP~d~~  151 (300)
                      +++++||+||++.+.|.+.+.++.+ -..++..+.+.++.|.++.+ +.+++.. |+|..+.
T Consensus        82 ~~~~~aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~  142 (481)
T 2o3j_A           82 KAIAEADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAA  142 (481)
T ss_dssp             HHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHH
T ss_pred             HHhhcCCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHH
Confidence            7889999999999887655433333 13345566777778877764 5555443 7888753

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.43  E-value=2.3e-06  Score=82.96  Aligned_cols=116  Identities=16%  Similarity=0.179  Sum_probs=76.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhC-CCCCEEEEEecCCc--ccHHHHhccccC------------------CCcEEEE
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANT--PGVAADVGHINT------------------RSEVAGY   84 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~-~~~~el~L~D~~~~--~g~~~dl~~~~~------------------~~~v~~~   84 (300)
                      .++|||+|||+ |.||..+|..|+.. |+. +|+++|+++.  ++.+..++....                  ...++. 
T Consensus        16 ~~~mkIaVIGl-G~mG~~lA~~la~~~G~~-~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~-   92 (478)
T 3g79_A           16 GPIKKIGVLGM-GYVGIPAAVLFADAPCFE-KVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC-   92 (478)
T ss_dssp             CSCCEEEEECC-STTHHHHHHHHHHSTTCC-EEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE-
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHhCCCC-eEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE-
Confidence            35689999995 99999999999998 763 8999999764  223334443211                  123443 


Q ss_pred             ecCCccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEe-cCCCccc
Q 022263           85 MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNST  151 (300)
Q Consensus        85 ~~t~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~  151 (300)
                        |+| .+++++||+||++.+.|..+..++    ..++..+...++.|.++. |+.++|.- |-|..+.
T Consensus        93 --ttd-~ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt  154 (478)
T 3g79_A           93 --TPD-FSRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTT  154 (478)
T ss_dssp             --ESC-GGGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTT
T ss_pred             --eCc-HHHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHH
Confidence              456 578999999999998776543321    134455666677777765 45555444 4565543

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.43  E-value=5.9e-07  Score=86.03  Aligned_cols=117  Identities=17%  Similarity=0.210  Sum_probs=70.7

Q ss_pred             cCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC--------------CCcEEEEe
Q 022263           20 GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--------------RSEVAGYM   85 (300)
Q Consensus        20 ~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~--------------~~~v~~~~   85 (300)
                      +.-.++.++|||+|||+ |.||..+|..|++ ++  +|+++|+++.+..  .++....              ...++.  
T Consensus        28 ~~~~r~~~~mkIaVIGl-G~mG~~lA~~La~-G~--~V~~~D~~~~~v~--~l~~g~~~i~e~~l~~ll~~~~~~l~~--   99 (432)
T 3pid_A           28 QQMGRGSEFMKITISGT-GYVGLSNGVLIAQ-NH--EVVALDIVQAKVD--MLNQKISPIVDKEIQEYLAEKPLNFRA--   99 (432)
T ss_dssp             -------CCCEEEEECC-SHHHHHHHHHHHT-TS--EEEEECSCHHHHH--HHHTTCCSSCCHHHHHHHHHSCCCEEE--
T ss_pred             cccccccCCCEEEEECc-CHHHHHHHHHHHc-CC--eEEEEecCHHHhh--HHhccCCccccccHHHHHhhccCCeEE--
Confidence            45555668899999995 9999999999987 76  9999999753222  1221100              112433  


Q ss_pred             cCCccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe-cCCCcc
Q 022263           86 GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNS  150 (300)
Q Consensus        86 ~t~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~-tNP~d~  150 (300)
                       ++|+++++++||+||++...+..+....     -+...+.+.++.+.+..|++++|.- |.|..+
T Consensus       100 -ttd~~ea~~~aDvViiaVPt~~~~~~~~-----~Dl~~V~~v~~~i~~l~~g~iVV~~STv~pgt  159 (432)
T 3pid_A          100 -TTDKHDAYRNADYVIIATPTDYDPKTNY-----FNTSTVEAVIRDVTEINPNAVMIIKSTIPVGF  159 (432)
T ss_dssp             -ESCHHHHHTTCSEEEECCCCEEETTTTE-----EECHHHHHHHHHHHHHCTTSEEEECSCCCTTH
T ss_pred             -EcCHHHHHhCCCEEEEeCCCcccccccc-----ccHHHHHHHHHHHHhcCCCcEEEEeCCCChHH
Confidence             4677789999999999875543222111     2334455555555555677776654 567663

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=98.43  E-value=6e-07  Score=81.92  Aligned_cols=111  Identities=20%  Similarity=0.147  Sum_probs=70.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC----CccccccCCCCEEE
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVI  101 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aDiVI  101 (300)
                      ..+|||.|+||+|++|++++..|+..|.  +|+++|++.....  ++.+.    .+..+.+.    .++.++++++|+||
T Consensus        11 ~~~M~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~l~~~----~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (342)
T 2x4g_A           11 GAHVKYAVLGATGLLGHHAARAIRAAGH--DLVLIHRPSSQIQ--RLAYL----EPECRVAEMLDHAGLERALRGLDGVI   82 (342)
T ss_dssp             -CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECTTSCGG--GGGGG----CCEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecChHhhh--hhccC----CeEEEEecCCCHHHHHHHHcCCCEEE
Confidence            3457999999999999999999999886  8999998653222  22221    12222111    13456789999999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ++|+..........+.+..|+.....+++.+.+.... .+|.+|
T Consensus        83 h~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~S  125 (342)
T 2x4g_A           83 FSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVP-RILYVG  125 (342)
T ss_dssp             EC------------CHHHHHHHHHHHHHHHHHHHTCS-CEEEEC
T ss_pred             ECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEC
Confidence            9998643222344567788999999999999887543 344444

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.41  E-value=2.6e-06  Score=73.96  Aligned_cols=110  Identities=16%  Similarity=0.126  Sum_probs=76.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcE-EEEec--CCccccccCCCCEEEE
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV-AGYMG--NDQLGQALEDSDVVII  102 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v-~~~~~--t~d~~~a~~~aDiVIi  102 (300)
                      .+.|||.|+||+|++|++++..|++.|.  +|++++++..+..  ++.+.    .+ ..+.+  +.++.++++++|+||.
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~--~~~~~----~~~~~~~~Dl~~~~~~~~~~~D~vi~   90 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQGP--ELRER----GASDIVVANLEEDFSHAFASIDAVVF   90 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHH--HHHHT----TCSEEEECCTTSCCGGGGTTCSEEEE
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHhC----CCceEEEcccHHHHHHHHcCCCEEEE
Confidence            4567999999999999999999999887  9999998654322  22211    11 11111  1356688999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +||....  ....+.+..|+.-...+++.+++.... .+|++|.
T Consensus        91 ~ag~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS  131 (236)
T 3e8x_A           91 AAGSGPH--TGADKTILIDLWGAIKTIQEAEKRGIK-RFIMVSS  131 (236)
T ss_dssp             CCCCCTT--SCHHHHHHTTTHHHHHHHHHHHHHTCC-EEEEECC
T ss_pred             CCCCCCC--CCccccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Confidence            9986532  334556777888889999999887644 4444443

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=98.39  E-value=5.1e-07  Score=77.70  Aligned_cols=105  Identities=13%  Similarity=0.114  Sum_probs=71.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC----CccccccCCCCEEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVII  102 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aDiVIi  102 (300)
                      +||||.|+||+|++|++++..|...+.  +|++++++.....  ++.     ..+..+.+.    .++.++++++|+||+
T Consensus         3 ~m~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   73 (227)
T 3dhn_A            3 KVKKIVLIGASGFVGSALLNEALNRGF--EVTAVVRHPEKIK--IEN-----EHLKVKKADVSSLDEVCEVCKGADAVIS   73 (227)
T ss_dssp             CCCEEEEETCCHHHHHHHHHHHHTTTC--EEEEECSCGGGCC--CCC-----TTEEEECCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEEcCcccch--hcc-----CceEEEEecCCCHHHHHHHhcCCCEEEE
Confidence            368999999999999999999999886  9999998643211  010     123322211    234567899999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +||...    +..+++..|....+.+++.+.+.... .+|.+|
T Consensus        74 ~a~~~~----~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  111 (227)
T 3dhn_A           74 AFNPGW----NNPDIYDETIKVYLTIIDGVKKAGVN-RFLMVG  111 (227)
T ss_dssp             CCCC----------CCSHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             eCcCCC----CChhHHHHHHHHHHHHHHHHHHhCCC-EEEEeC
Confidence            997642    22236778999999999999887654 344444

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.37  E-value=1.9e-06  Score=82.52  Aligned_cols=108  Identities=19%  Similarity=0.256  Sum_probs=70.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC----------------CCcEEEEecCCcccc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLGQ   92 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~d~~~   92 (300)
                      |||+|||+ |.||..++..|+..|+  +|+++|+++.+..  .+.....                ...++.   ++++++
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~~G~--~V~~~d~~~~~~~--~l~~~~~~i~e~~l~~~~~~~~~~g~l~~---t~~~~~   72 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTKID--LINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKK   72 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHhCCCCCcCCCCHHHHHHhhcccCceEE---eCCHHH
Confidence            69999995 9999999999999887  8999998653222  1221100                112433   357767


Q ss_pred             ccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CC---CeEEEEe-cCCCcc
Q 022263           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CP---NAIVNMI-SNPVNS  150 (300)
Q Consensus        93 a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p---~a~viv~-tNP~d~  150 (300)
                      ++++||+||++...|..+.. .     .+...+++.++.+.++ .+   +.+++.. |+|..+
T Consensus        73 ~~~~aDvviiaVptp~~~~~-~-----~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~  129 (436)
T 1mv8_A           73 AVLDSDVSFICVGTPSKKNG-D-----LDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGT  129 (436)
T ss_dssp             HHHTCSEEEECCCCCBCTTS-S-----BCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred             HhccCCEEEEEcCCCcccCC-C-----cchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCc
Confidence            89999999999877653221 1     2334445555555554 34   6666655 788774

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=98.36  E-value=9.3e-07  Score=80.95  Aligned_cols=172  Identities=13%  Similarity=0.081  Sum_probs=96.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC----CccccccCC--CCEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALED--SDVV  100 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~--aDiV  100 (300)
                      .+|||.|+||+|++|++++..|+..|..-+++..|..........+........+..+.+.    .++.+++++  +|+|
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~V  102 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQVI  102 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCEE
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCEE
Confidence            4689999999999999999999988743378888875422221222222111234433221    123455666  9999


Q ss_pred             EEcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccH-----HHHHHHHHHhCCCCCCcEEEe
Q 022263          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV-----PIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       101 Ii~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~-----~i~~~~~~~~~~~~~~kviG~  173 (300)
                      |++|+.....  ..+..+.+..|+.....+++.+.+....- +|.+|.. .+..     ..+.   ... ...+...+|.
T Consensus       103 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~v~~SS~-~vy~~~~~~~~~~---E~~-~~~p~~~Y~~  176 (346)
T 4egb_A          103 VNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIK-LVQVSTD-EVYGSLGKTGRFT---EET-PLAPNSPYSS  176 (346)
T ss_dssp             EECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSE-EEEEEEG-GGGCCCCSSCCBC---TTS-CCCCCSHHHH
T ss_pred             EECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCE-EEEeCch-HHhCCCCcCCCcC---CCC-CCCCCChhHH
Confidence            9999864321  12345677889999999999998876543 4444321 0000     0000   001 1222333444


Q ss_pred             eehhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                      +.....++...+++..+++..-++ +.++|..
T Consensus       177 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~  208 (346)
T 4egb_A          177 SKASADMIALAYYKTYQLPVIVTRCSNNYGPY  208 (346)
T ss_dssp             HHHHHHHHHHHHHHHHCCCEEEEEECEEESTT
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEeecceeCcC
Confidence            444444555556666787766665 5577765

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=98.33  E-value=8.5e-07  Score=81.24  Aligned_cols=105  Identities=18%  Similarity=0.225  Sum_probs=71.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ++|+|.|+||+|++|++++..|+..|.  +|+.+|+....      ....   .+.. .....++.++++++|+||++|+
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~------~~~~---~~~~Dl~d~~~~~~~~~~~d~vih~A~   86 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGR--TVRGFDLRPSG------TGGE---EVVGSLEDGQALSDAIMGVSAVLHLGA   86 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTC--CEEEEESSCCS------SCCS---EEESCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCC------CCcc---EEecCcCCHHHHHHHHhCCCEEEECCc
Confidence            567999999999999999999999887  89999986532      0000   0110 0001234567899999999998


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEE
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN  142 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~vi  142 (300)
                      ..........+.+..|+.....+++.+.+....-++.
T Consensus        87 ~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~  123 (347)
T 4id9_A           87 FMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVF  123 (347)
T ss_dssp             CCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEE
T ss_pred             ccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence            6543333336677889999999999998866544443

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=98.30  E-value=7.8e-07  Score=80.42  Aligned_cols=161  Identities=16%  Similarity=0.111  Sum_probs=91.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec-CCcccHHHHhccccCCCcEEEEec---CCccccccCCCCEEEEc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTPGVAADVGHINTRSEVAGYMG---NDQLGQALEDSDVVIIP  103 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~-~~~~g~~~dl~~~~~~~~v~~~~~---t~d~~~a~~~aDiVIi~  103 (300)
                      |++|.|+||+|++|++++..|...+   +++.++. ......  .+..     .+..+.+   ..++.++++++|+||++
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g---~~v~~~~~~~~~~~--~~~~-----~~~~~~~Dl~~~~~~~~~~~~d~vih~   70 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESN---EIVVIDNLSSGNEE--FVNE-----AARLVKADLAADDIKDYLKGAEEVWHI   70 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTS---CEEEECCCSSCCGG--GSCT-----TEEEECCCTTTSCCHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCC---CEEEEEcCCCCChh--hcCC-----CcEEEECcCChHHHHHHhcCCCEEEEC
Confidence            5789999999999999999999887   3444444 221111  0110     1221111   13455678899999999


Q ss_pred             CCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccH----HHHHHHHHHhCCCCCCcEEEeeehh
Q 022263          104 AGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV----PIAAEVFKKAGTYNEKKLFGVTTLD  177 (300)
Q Consensus       104 ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~----~i~~~~~~~~~~~~~~kviG~t~Ld  177 (300)
                      |+.+...  .....+.+..|+.....+++.+.+.+.. .+|.+|. .....    ....   ...+ .++...+|.+...
T Consensus        71 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS-~~vyg~~~~~~~~---E~~~-~~~~~~Y~~sK~~  144 (313)
T 3ehe_A           71 AANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS-RIVFTST-STVYGEAKVIPTP---EDYP-THPISLYGASKLA  144 (313)
T ss_dssp             CCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEECC-GGGGCSCSSSSBC---TTSC-CCCCSHHHHHHHH
T ss_pred             CCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCc-hHHhCcCCCCCCC---CCCC-CCCCCHHHHHHHH
Confidence            9864321  2334567788999999999999887644 4444442 11000    0000   0001 2233334444444


Q ss_pred             HHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263          178 VVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       178 s~R~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                      ..++...+++..+++..-++ ..++|..
T Consensus       145 ~e~~~~~~~~~~g~~~~ilRp~~v~G~~  172 (313)
T 3ehe_A          145 CEALIESYCHTFDMQAWIYRFANVIGRR  172 (313)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECSCEESTT
T ss_pred             HHHHHHHHHHhcCCCEEEEeeccccCcC
Confidence            45566666777777655554 4477765

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.30  E-value=2.6e-06  Score=79.67  Aligned_cols=100  Identities=14%  Similarity=0.197  Sum_probs=69.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccc--------cCCCcEEEEecCCccccccCCCCE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--------NTRSEVAGYMGNDQLGQALEDSDV   99 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~--------~~~~~v~~~~~t~d~~~a~~~aDi   99 (300)
                      +|||+|||+ |.+|.+++..|+..++  +|.++|+++.....+.-.+.        ..+..++.   ++|+++++++||+
T Consensus        29 ~mkI~VIGa-G~mG~alA~~La~~G~--~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~---t~d~~ea~~~aDv  102 (356)
T 3k96_A           29 KHPIAILGA-GSWGTALALVLARKGQ--KVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA---YCDLKASLEGVTD  102 (356)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE---ESCHHHHHTTCCE
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE---ECCHHHHHhcCCE
Confidence            579999996 9999999999999887  89999986532221111111        11223443   3577788999999


Q ss_pred             EEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCc
Q 022263          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (300)
Q Consensus       100 VIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (300)
                      ||++.-                ...++++++.+..+. |+.+++.++|..+
T Consensus       103 VilaVp----------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi~  137 (356)
T 3k96_A          103 ILIVVP----------------SFAFHEVITRMKPLIDAKTRIAWGTKGLA  137 (356)
T ss_dssp             EEECCC----------------HHHHHHHHHHHGGGCCTTCEEEECCCSCB
T ss_pred             EEECCC----------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            999852                124677777887775 5778888888655

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.29  E-value=1.7e-06  Score=87.99  Aligned_cols=121  Identities=21%  Similarity=0.376  Sum_probs=78.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cHH--HH-h---cccc---------CCCcEEEEecC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVA--AD-V---GHIN---------TRSEVAGYMGN   87 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~--~d-l---~~~~---------~~~~v~~~~~t   87 (300)
                      .+++||+|||+ |.||..+|..++..|+  +|+++|+++..   +..  .+ +   ....         ....++.   +
T Consensus       310 ~~~~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~  383 (725)
T 2wtb_A          310 RKIKKVAIIGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKG---S  383 (725)
T ss_dssp             CCCCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEE---E
T ss_pred             ccCcEEEEEcC-CHhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEE---e
Confidence            35679999995 9999999999999998  89999997531   110  00 0   0000         1123443   3


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCC
Q 022263           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (300)
Q Consensus        88 ~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~  166 (300)
                      +|+ +++++||+||+++              .++..+.+++..++.++++ ++++  +||....-   ++++.+..  -.
T Consensus       384 ~d~-~~~~~aDlVIeaV--------------pe~~~vk~~v~~~l~~~~~~~~Il--asntStl~---i~~la~~~--~~  441 (725)
T 2wtb_A          384 LDY-ESFRDVDMVIEAV--------------IENISLKQQIFADLEKYCPQHCIL--ASNTSTID---LNKIGERT--KS  441 (725)
T ss_dssp             SSS-GGGTTCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTCEE--EECCSSSC---HHHHTTTC--SC
T ss_pred             CCH-HHHCCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EeCCCCCC---HHHHHHHh--cC
Confidence            466 6899999999985              3456777888888888875 5644  67765431   23333222  22


Q ss_pred             CCcEEEee
Q 022263          167 EKKLFGVT  174 (300)
Q Consensus       167 ~~kviG~t  174 (300)
                      +++++|+.
T Consensus       442 p~~~iG~h  449 (725)
T 2wtb_A          442 QDRIVGAH  449 (725)
T ss_dssp             TTTEEEEE
T ss_pred             CCCEEEec
Confidence            45777763

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=98.29  E-value=3.9e-06  Score=71.50  Aligned_cols=101  Identities=14%  Similarity=0.124  Sum_probs=69.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Ccc-ccccCCCCEEEEcCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQL-GQALEDSDVVIIPAGV  106 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d~-~~a~~~aDiVIi~ag~  106 (300)
                      |||.|+||+|++|++++..|+..|.  +|+++++++.+..  ++..     .+..+.+. +|. .++++++|+||.+||.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~--~~~~-----~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   71 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH--EVTAIVRNAGKIT--QTHK-----DINILQKDIFDLTLSDLSDQNVVVDAYGI   71 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCSHHHH--HHCS-----SSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEEcCchhhh--hccC-----CCeEEeccccChhhhhhcCCCEEEECCcC
Confidence            7999999999999999999999987  9999998653222  2221     12222111 111 1578999999999987


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +..       ....|....+.+++.+++... ..+|++|.
T Consensus        72 ~~~-------~~~~~~~~~~~l~~a~~~~~~-~~~v~~SS  103 (221)
T 3ew7_A           72 SPD-------EAEKHVTSLDHLISVLNGTVS-PRLLVVGG  103 (221)
T ss_dssp             STT-------TTTSHHHHHHHHHHHHCSCCS-SEEEEECC
T ss_pred             Ccc-------ccchHHHHHHHHHHHHHhcCC-ceEEEEec
Confidence            532       134588888999998887643 34555543

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=98.29  E-value=8.1e-06  Score=74.71  Aligned_cols=136  Identities=13%  Similarity=0.029  Sum_probs=73.6

Q ss_pred             hhhhhhhhhhccccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEE
Q 022263            3 SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA   82 (300)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~   82 (300)
                      +|+-..-+.-.+|-+..+..+.. ++|+|.|+||+|++|++++..|...+.  +|+++|+...... ..+.+......+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~~~~~~~~~~   78 (343)
T 2b69_A            3 SSHHHHHHSSGRENLYFQGHMEK-DRKRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRK-RNVEHWIGHENFE   78 (343)
T ss_dssp             -------------------------CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGTGGGTTCTTEE
T ss_pred             ccccccccccccccccccccccc-CCCEEEEEcCccHHHHHHHHHHHHCCC--EEEEEeCCCccch-hhhhhhccCCceE
Confidence            34433334445566666655554 568999999999999999999998887  8999997532111 0111111111344


Q ss_pred             EEecCCccccccCCCCEEEEcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263           83 GYMGNDQLGQALEDSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        83 ~~~~t~d~~~a~~~aDiVIi~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      .+.+. -.+.++.++|+||++|+.....  ..+..+.+..|+.....+++.+.+...  .+|.+|
T Consensus        79 ~~~~D-~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  140 (343)
T 2b69_A           79 LINHD-VVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLAS  140 (343)
T ss_dssp             EEECC-TTSCCCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             EEeCc-cCChhhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEC
Confidence            33321 1234678999999999864311  122345667899999999999888764  555554

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=98.29  E-value=5.2e-07  Score=82.81  Aligned_cols=174  Identities=15%  Similarity=0.040  Sum_probs=99.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccC---CCcEEEEecC----CccccccCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT---RSEVAGYMGN----DQLGQALEDS   97 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~---~~~v~~~~~t----~d~~~a~~~a   97 (300)
                      .+|+|.|+||+|++|++++..|...|.  +|+.+|+...  .....++.....   ...+..+.+.    .++.++++++
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            457999999999999999999999887  8999998542  112222222100   0133333221    2345678899


Q ss_pred             CEEEEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeee
Q 022263           98 DVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT  175 (300)
Q Consensus        98 DiVIi~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~  175 (300)
                      |+||++|+....+.  .+..+.+..|+.....+++.+.+....-++ .+|.. .+...--...+.......+....|.+.
T Consensus       102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v-~~SS~-~vyg~~~~~~~~E~~~~~p~~~Y~~sK  179 (351)
T 3ruf_A          102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFT-YAASS-STYGDHPALPKVEENIGNPLSPYAVTK  179 (351)
T ss_dssp             SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEE-EEEEG-GGGTTCCCSSBCTTCCCCCCSHHHHHH
T ss_pred             CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEE-EEecH-HhcCCCCCCCCccCCCCCCCChhHHHH
Confidence            99999998632111  123456678999999999999887654444 34311 000000000000000012223334444


Q ss_pred             hhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263          176 LDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       176 Lds~R~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                      +...++...+++..+++..-++ ..|+|..
T Consensus       180 ~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~  209 (351)
T 3ruf_A          180 YVNEIYAQVYARTYGFKTIGLRYFNVFGRR  209 (351)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEEECSEESTT
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeeCceeCcC
Confidence            4455565666677788877776 3488865

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.28  E-value=2.6e-06  Score=77.59  Aligned_cols=120  Identities=18%  Similarity=0.272  Sum_probs=76.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHH-hccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAAD-VGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~d-l~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ..+||+|||+ |.||..+|..|+ .|+  +|+++|+++... ...+ +.+.. ...++.   +++++ ++++||+||.+.
T Consensus        11 ~~~~V~vIG~-G~MG~~iA~~la-aG~--~V~v~d~~~~~~~~~~~~l~~~~-~~~i~~---~~~~~-~~~~aDlVieav   81 (293)
T 1zej_A           11 HHMKVFVIGA-GLMGRGIAIAIA-SKH--EVVLQDVSEKALEAAREQIPEEL-LSKIEF---TTTLE-KVKDCDIVMEAV   81 (293)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHSCGGG-GGGEEE---ESSCT-TGGGCSEEEECC
T ss_pred             CCCeEEEEee-CHHHHHHHHHHH-cCC--EEEEEECCHHHHHHHHHHHHHHH-hCCeEE---eCCHH-HHcCCCEEEEcC
Confidence            4579999995 999999999999 998  999999975311 1112 21111 113443   24664 489999999985


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehh
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLD  177 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Ld  177 (300)
                                    .++..+.+.+..++... |++++  +||....-   .+++....  -.+.+++|+..++
T Consensus        82 --------------pe~~~vk~~l~~~l~~~-~~~Il--asntSti~---~~~~a~~~--~~~~r~~G~Hf~~  132 (293)
T 1zej_A           82 --------------FEDLNTKVEVLREVERL-TNAPL--CSNTSVIS---VDDIAERL--DSPSRFLGVHWMN  132 (293)
T ss_dssp             --------------CSCHHHHHHHHHHHHTT-CCSCE--EECCSSSC---HHHHHTTS--SCGGGEEEEEECS
T ss_pred             --------------cCCHHHHHHHHHHHhcC-CCCEE--EEECCCcC---HHHHHHHh--hcccceEeEEecC
Confidence                          34566677777778888 88876  45544321   12222222  2256788875443

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.27  E-value=2.5e-06  Score=82.80  Aligned_cols=106  Identities=12%  Similarity=0.133  Sum_probs=71.5

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC----------------CCcEEEEecCC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGND   88 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~   88 (300)
                      +...|||+|||+ |.||..+|..|+..|+  +|+++|+++.+-.  .++....                ...++.   ++
T Consensus         5 ~~~~~~I~VIG~-G~vG~~lA~~la~~G~--~V~~~d~~~~~v~--~l~~~~~~i~e~gl~~~l~~~~~~~~l~~---tt   76 (478)
T 2y0c_A            5 HHGSMNLTIIGS-GSVGLVTGACLADIGH--DVFCLDVDQAKID--ILNNGGVPIHEPGLKEVIARNRSAGRLRF---ST   76 (478)
T ss_dssp             --CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHTTCCSSCCTTHHHHHHHHHHTTCEEE---EC
T ss_pred             cCCCceEEEECc-CHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHCCCCCcCCCCHHHHHHHhcccCCEEE---EC
Confidence            346799999995 9999999999999988  9999999653221  1221100                112443   45


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEe
Q 022263           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI  144 (300)
Q Consensus        89 d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~  144 (300)
                      |+++++++||+||++...|.++..      .-+...++++++.|.++. |+.+++..
T Consensus        77 d~~~a~~~aDvviiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~~~iVV~~  127 (478)
T 2y0c_A           77 DIEAAVAHGDVQFIAVGTPPDEDG------SADLQYVLAAARNIGRYMTGFKVIVDK  127 (478)
T ss_dssp             CHHHHHHHCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             CHHHHhhcCCEEEEEeCCCcccCC------CccHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            777789999999999887654332      234566777777777765 46665544

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=98.26  E-value=3.1e-06  Score=77.16  Aligned_cols=169  Identities=13%  Similarity=0.073  Sum_probs=93.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhC---C---CCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-C---ccccccCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLN---P---LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---QLGQALEDSD   98 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~---~---~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~~a~~~aD   98 (300)
                      |||.|+||+|++|++++..|+..   +   .  +|+++|+....+....+........+..+.+. +   ++.+++.++|
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   78 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPAD--EVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVD   78 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCS--EEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCC
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCce--EEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCC
Confidence            68999999999999999999885   5   4  89999975321111111111111133332221 1   2445678999


Q ss_pred             EEEEcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcc--c-HHHHHHHHHHhCCCCCCcEEEe
Q 022263           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS--T-VPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus        99 iVIi~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~--~-~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      +||++|+.....  ..+..+.+..|+.....+++.+.+.... .+|.+|...-.  . ...+++   ..+ .++...+|.
T Consensus        79 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E---~~~-~~~~~~Y~~  153 (337)
T 1r6d_A           79 AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG-RVVHVSTNQVYGSIDSGSWTE---SSP-LEPNSPYAA  153 (337)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGCCCSSSCBCT---TSC-CCCCSHHHH
T ss_pred             EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecchHHhCCCCCCCCCC---CCC-CCCCCchHH
Confidence            999999864211  0123456778899999999998887543 44444321000  0 000000   001 222233333


Q ss_pred             eehhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                      +.....++-..+++..+++..-++ ..++|..
T Consensus       154 sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~  185 (337)
T 1r6d_A          154 SKAGSDLVARAYHRTYGLDVRITRCCNNYGPY  185 (337)
T ss_dssp             HHHHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEeeeeECCC
Confidence            434444454555666677665555 4577754

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=98.25  E-value=2.7e-06  Score=73.01  Aligned_cols=101  Identities=15%  Similarity=0.165  Sum_probs=70.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec--C---CccccccCCCCEEEEc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG--N---DQLGQALEDSDVVIIP  103 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--t---~d~~~a~~~aDiVIi~  103 (300)
                      |||.|+||+|++|+.++..|+..|.  +|++++++.....  ++      ..+..+.+  +   .++.++++++|+||.+
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~--~~------~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~   70 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY--QIYAGARKVEQVP--QY------NNVKAVHFDVDWTPEEMAKQLHGMDAIINV   70 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC--EEEEEESSGGGSC--CC------TTEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCccchh--hc------CCceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence            6999999999999999999999886  9999998643211  01      12222211  1   1355678999999999


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ||...      .+.+..|......+++.+++.... .+|.+|.
T Consensus        71 ag~~~------~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS  106 (219)
T 3dqp_A           71 SGSGG------KSLLKVDLYGAVKLMQAAEKAEVK-RFILLST  106 (219)
T ss_dssp             CCCTT------SSCCCCCCHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             CcCCC------CCcEeEeHHHHHHHHHHHHHhCCC-EEEEECc
Confidence            98754      224567888888888888876544 4554543

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.25  E-value=1e-05  Score=77.58  Aligned_cols=129  Identities=19%  Similarity=0.224  Sum_probs=80.8

Q ss_pred             ccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHH-------------Hh-ccccCCCc
Q 022263           15 PAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA-------------DV-GHINTRSE   80 (300)
Q Consensus        15 ~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~-------------dl-~~~~~~~~   80 (300)
                      |-......++..+|.+|+|||. |+||..+|..|+..|+  +++.+|+++.+-..+             |+ .+.....+
T Consensus         8 ~~~~~~~~p~~~~m~~IaViGl-GYVGLp~A~~~A~~G~--~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~   84 (444)
T 3vtf_A            8 HHHSSGLVPRGSHMASLSVLGL-GYVGVVHAVGFALLGH--RVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGR   84 (444)
T ss_dssp             -----CCCCTTCCCCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTC
T ss_pred             ccccCCcCCCCCCCCEEEEEcc-CHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCC
Confidence            3344445556667889999995 9999999999998888  999999975321111             11 11111124


Q ss_pred             EEEEecCCccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEE-ecCCCccc
Q 022263           81 VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPVNST  151 (300)
Q Consensus        81 v~~~~~t~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv-~tNP~d~~  151 (300)
                      ++.   |+|.++++++||++|++++.|.++..+ -|+ ..-....+.+++.++..++..++|+ -|-|+.+.
T Consensus        85 l~~---tt~~~~ai~~ad~~~I~VpTP~~~d~~-~Dl-~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtt  151 (444)
T 3vtf_A           85 LSF---AESAEEAVAATDATFIAVGTPPAPDGS-ADL-RYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTT  151 (444)
T ss_dssp             EEE---CSSHHHHHHTSSEEEECCCCCBCTTSS-BCC-HHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTT
T ss_pred             eeE---EcCHHHHHhcCCceEEEecCCCCCCCC-CCc-HHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchH
Confidence            443   567778899999999999988655431 121 2223455667777766665555544 36677653

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=98.24  E-value=1.7e-06  Score=79.20  Aligned_cols=113  Identities=19%  Similarity=0.174  Sum_probs=73.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhC--CCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC----CccccccCCCCEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVI  101 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~--~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aDiVI  101 (300)
                      ||+|.|+||+|++|++++..|+..  +.  +|+++|+....+....+.... ...+..+.+.    .++.++++++|+||
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   80 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDV--HVTVLDKLTYAGNKANLEAIL-GDRVELVVGDIADAELVDKLAAKADAIV   80 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTC--EEEEEECCCTTCCGGGTGGGC-SSSEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCC--EEEEEeCCCCCCChhHHhhhc-cCCeEEEECCCCCHHHHHHHhhcCCEEE
Confidence            679999999999999999999887  55  899999854211101111110 1133332221    12446788999999


Q ss_pred             EcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       102 i~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ++||.....  ..+..+.+..|+.....+++.+.+...  .+|.+|
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~S  124 (348)
T 1oc2_A           81 HYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVS  124 (348)
T ss_dssp             ECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEec
Confidence            999864311  012345677888889999999888754  555554

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=98.24  E-value=1.7e-06  Score=79.64  Aligned_cols=170  Identities=14%  Similarity=0.089  Sum_probs=94.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhC-CCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-C---ccccccC--CCCEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---QLGQALE--DSDVVI  101 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~~a~~--~aDiVI  101 (300)
                      |||.|+||+|++|++++..|+.. +.  +|+++|.....+....+.+......+..+.+. +   ++.++++  ++|+||
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   78 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVM   78 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCC--eEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            68999999999999999988886 56  89999975311111112111111133333221 1   2334566  899999


Q ss_pred             EcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhh--CCC------eEEEEecCCC--cccH---H--------HHHHH
Q 022263          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKY--CPN------AIVNMISNPV--NSTV---P--------IAAEV  158 (300)
Q Consensus       102 i~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~--~p~------a~viv~tNP~--d~~~---~--------i~~~~  158 (300)
                      ++||.....  .....+.+..|+.....+++.+.+.  .-+      +.+|.+|...  ....   .        .+.| 
T Consensus        79 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E-  157 (361)
T 1kew_A           79 HLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTE-  157 (361)
T ss_dssp             ECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCT-
T ss_pred             ECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCC-
Confidence            999864310  0123456777888888888888877  433      3565554211  0000   0        0000 


Q ss_pred             HHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       159 ~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                        ..+ .++...+|.+.....++...+++.++++..-++ +.|+|..
T Consensus       158 --~~~-~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~  201 (361)
T 1kew_A          158 --TTA-YAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPY  201 (361)
T ss_dssp             --TSC-CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTT
T ss_pred             --CCC-CCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCC
Confidence              001 223333344444444555556666777766665 4577765

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=98.23  E-value=9.3e-06  Score=73.96  Aligned_cols=113  Identities=12%  Similarity=0.087  Sum_probs=70.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc----cHHHHhccccCCCcEEEEec----CCccccccCCCCE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP----GVAADVGHINTRSEVAGYMG----NDQLGQALEDSDV   99 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~----g~~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aDi   99 (300)
                      ++||.|+||+|++|++++..|+..|.  +|+..+++...    ....++...   ..+..+.+    ..++.++++++|+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~d~~~~~~~~~~~D~   83 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY--AVNTTVRDPDNQKKVSHLLELQEL---GDLKIFRADLTDELSFEAPIAGCDF   83 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC--EEEEEESCTTCTTTTHHHHHHGGG---SCEEEEECCTTTSSSSHHHHTTCSE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCcchhhhHHHHHhcCCC---CcEEEEecCCCChHHHHHHHcCCCE
Confidence            46899999999999999999999887  88877664321    111123211   12332221    1235567899999


Q ss_pred             EEEcCCCCCCCCCc-chhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          100 VIIPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       100 VIi~ag~~~~~g~~-r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ||++|+.......+ ..+.+..|+.-...+.+.+.+...-..+|.+|
T Consensus        84 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~S  130 (338)
T 2rh8_A           84 VFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTS  130 (338)
T ss_dssp             EEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             EEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEe
Confidence            99999854211111 22367889999999999888764223455554

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=98.23  E-value=2.7e-06  Score=77.59  Aligned_cols=113  Identities=19%  Similarity=0.183  Sum_probs=74.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHHHHhccccCCCcEEEEecC----CccccccCC--CC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGN----DQLGQALED--SD   98 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~--aD   98 (300)
                      ||||.|+||+|++|++++..|+..|.  +|+++|+...   .....++....   .+..+.+.    .++++++++  +|
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~---~~~~~~~Dl~d~~~~~~~~~~~~~d   75 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSLG---NFEFVHGDIRNKNDVTRLITKYMPD   75 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTTC---CCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCC--EEEEEeCCCccCchhhhhhhccCC---ceEEEEcCCCCHHHHHHHHhccCCC
Confidence            57999999999999999999999887  8999997421   11122232211   22222211    124456777  99


Q ss_pred             EEEEcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        99 iVIi~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +||++|+.....  ..+..+.+..|+.....+++.+.+....+.+|.+|
T Consensus        76 ~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~S  124 (347)
T 1orr_A           76 SCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  124 (347)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence            999999864210  01234567789999999999999887655566555

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.22  E-value=3.4e-06  Score=82.00  Aligned_cols=118  Identities=23%  Similarity=0.358  Sum_probs=75.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HH-H----hccccC------------CCcEEEEecCCc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AA-D----VGHINT------------RSEVAGYMGNDQ   89 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~-d----l~~~~~------------~~~v~~~~~t~d   89 (300)
                      .+||+|||+ |.||..+|..|+..|+  +|+++|+++.... .. .    +.....            ...++.   ++|
T Consensus         5 ~~kVgVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~   78 (483)
T 3mog_A            5 VQTVAVIGS-GTMGAGIAEVAASHGH--QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIP---VTD   78 (483)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEE---ECC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeE---eCC
Confidence            459999996 9999999999999998  8999999753111 11 0    111000            012443   346


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022263           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (300)
Q Consensus        90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~  168 (300)
                      + +++++||+||++.              ..+..+.+++..++.++++ ++++  +||.+..-   ++++.....  .++
T Consensus        79 ~-~~~~~aDlVIeAV--------------pe~~~vk~~v~~~l~~~~~~~~Il--asntSti~---i~~ia~~~~--~p~  136 (483)
T 3mog_A           79 I-HALAAADLVIEAA--------------SERLEVKKALFAQLAEVCPPQTLL--TTNTSSIS---ITAIAAEIK--NPE  136 (483)
T ss_dssp             G-GGGGGCSEEEECC--------------CCCHHHHHHHHHHHHHHSCTTCEE--EECCSSSC---HHHHTTTSS--SGG
T ss_pred             H-HHhcCCCEEEEcC--------------CCcHHHHHHHHHHHHHhhccCcEE--EecCCCCC---HHHHHHHcc--Ccc
Confidence            6 5799999999985              2456777888888888875 6655  45555432   123222221  356


Q ss_pred             cEEEe
Q 022263          169 KLFGV  173 (300)
Q Consensus       169 kviG~  173 (300)
                      +++|+
T Consensus       137 ~~ig~  141 (483)
T 3mog_A          137 RVAGL  141 (483)
T ss_dssp             GEEEE
T ss_pred             ceEEe
Confidence            77776

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.22  E-value=8.8e-06  Score=70.11  Aligned_cols=78  Identities=21%  Similarity=0.348  Sum_probs=55.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ..+|||+|||+ |.+|+.++..|...+.  ++.++|+++.                           ++++||+||++..
T Consensus        17 ~~~~~I~iiG~-G~mG~~la~~l~~~g~--~V~~~~~~~~---------------------------~~~~aD~vi~av~   66 (209)
T 2raf_A           17 FQGMEITIFGK-GNMGQAIGHNFEIAGH--EVTYYGSKDQ---------------------------ATTLGEIVIMAVP   66 (209)
T ss_dssp             ---CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECTTCC---------------------------CSSCCSEEEECSC
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCHH---------------------------HhccCCEEEEcCC
Confidence            45689999995 9999999999999887  8999987532                           3578999999853


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      .                ..++++++.+.++.++.+++.++|+.+
T Consensus        67 ~----------------~~~~~v~~~l~~~~~~~~vi~~~~g~~   94 (209)
T 2raf_A           67 Y----------------PALAALAKQYATQLKGKIVVDITNPLN   94 (209)
T ss_dssp             H----------------HHHHHHHHHTHHHHTTSEEEECCCCBC
T ss_pred             c----------------HHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence            1                123344444444333788888999765

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=98.22  E-value=4.9e-06  Score=75.59  Aligned_cols=116  Identities=11%  Similarity=-0.018  Sum_probs=75.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HHH-hccccCCCcEEEE-ec----CCccccccCCCCE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AAD-VGHINTRSEVAGY-MG----NDQLGQALEDSDV   99 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~d-l~~~~~~~~v~~~-~~----t~d~~~a~~~aDi   99 (300)
                      +.++|.|+||+|++|++++..|+..|.  +|+++|++..... ..+ +.+. ....+..+ .+    ..+++++++++|+
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~d~   86 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAK-YPGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHH-STTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCcccHHHHHHHhhcc-CCCceEEEEecCCcChHHHHHHHcCCCE
Confidence            346999999999999999999999887  8999988543211 111 1110 00123322 11    1234566789999


Q ss_pred             EEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       100 VIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ||++|+.... +.+..+.+..|+.....+++.+.+......+|.+|.
T Consensus        87 vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS  132 (342)
T 1y1p_A           87 VAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS  132 (342)
T ss_dssp             EEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred             EEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence            9999986532 234456778899999999998875333345555543

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=98.21  E-value=3.3e-06  Score=72.32  Aligned_cols=102  Identities=21%  Similarity=0.181  Sum_probs=69.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Ccc-ccccCCCCEEEEcCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQL-GQALEDSDVVIIPAGV  106 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d~-~~a~~~aDiVIi~ag~  106 (300)
                      |||.|+||+|++|++++..|+..+.  +|++++++.....  ++...    .+..+.+. +|. .++++++|+||.+||.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~--~~~~~----~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   72 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH--EVLAVVRDPQKAA--DRLGA----TVATLVKEPLVLTEADLDSVDAVVDALSV   72 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHTCT----TSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC--EEEEEEecccccc--cccCC----CceEEecccccccHhhcccCCEEEECCcc
Confidence            7899999999999999999999887  8999988543211  22211    22222111 111 1578999999999987


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ...+.     ....|....+.+++.+++.+  ..+|++|
T Consensus        73 ~~~~~-----~~~~n~~~~~~l~~a~~~~~--~~~v~~S  104 (224)
T 3h2s_A           73 PWGSG-----RGYLHLDFATHLVSLLRNSD--TLAVFIL  104 (224)
T ss_dssp             CTTSS-----CTHHHHHHHHHHHHTCTTCC--CEEEEEC
T ss_pred             CCCcc-----hhhHHHHHHHHHHHHHHHcC--CcEEEEe
Confidence            52222     23568888899998888776  4555554

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=98.20  E-value=4.3e-06  Score=73.76  Aligned_cols=108  Identities=14%  Similarity=0.107  Sum_probs=64.0

Q ss_pred             cccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--c--H--------HHHhccccCCCcEEEEe
Q 022263           18 ARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--G--V--------AADVGHINTRSEVAGYM   85 (300)
Q Consensus        18 ~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g--~--------~~dl~~~~~~~~v~~~~   85 (300)
                      ...+.......+||+|||+ |.+|.+++..|...++  +|.++|+++.+  .  .        ..++.... . ....  
T Consensus         9 ~~~~~~~~~~~~kIgiIG~-G~mG~alA~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~--   81 (245)
T 3dtt_A            9 HHHHENLYFQGMKIAVLGT-GTVGRTMAGALADLGH--EVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH-P-HVHL--   81 (245)
T ss_dssp             ----------CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHTCC-------CCHHHHGGGS-T-TCEE--
T ss_pred             cccccccccCCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc-C-ceec--
Confidence            3345555567789999995 9999999999999887  99999986532  0  0        12222211 1 1221  


Q ss_pred             cCCccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263           86 GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus        86 ~t~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                        .+..+++++||+||++....            .-.+.+.++.   ...-++.++|.++||.+
T Consensus        82 --~~~~e~~~~aDvVilavp~~------------~~~~~~~~i~---~~~l~g~ivi~~s~~~~  128 (245)
T 3dtt_A           82 --AAFADVAAGAELVVNATEGA------------SSIAALTAAG---AENLAGKILVDIANPLD  128 (245)
T ss_dssp             --EEHHHHHHHCSEEEECSCGG------------GHHHHHHHHC---HHHHTTSEEEECCCCEE
T ss_pred             --cCHHHHHhcCCEEEEccCcH------------HHHHHHHHhh---hhhcCCCEEEECCCCCC
Confidence              24567889999999986321            1123334441   22227889999999874

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.20  E-value=1.1e-05  Score=72.59  Aligned_cols=97  Identities=14%  Similarity=0.206  Sum_probs=65.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      +|||+|||+ |.+|..++..|...++ ..+|.++|+++.+..  ++.+..   .+..   +++..++++++|+||++.- 
T Consensus         3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~--~l~~~~---gi~~---~~~~~~~~~~aDvVilav~-   72 (280)
T 3tri_A            3 TSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDKLD--FFKEKC---GVHT---TQDNRQGALNADVVVLAVK-   72 (280)
T ss_dssp             CSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHHHH--HHHHTT---CCEE---ESCHHHHHSSCSEEEECSC-
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHH--HHHHHc---CCEE---eCChHHHHhcCCeEEEEeC-
Confidence            579999996 9999999999998885 357999998764322  233211   2332   2355688999999999861 


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhh--CCCeEEEEecCCCc
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNPVN  149 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP~d  149 (300)
                         |            ..+.++.+.+..+  .++.+++.+++.+.
T Consensus        73 ---p------------~~~~~vl~~l~~~~l~~~~iiiS~~agi~  102 (280)
T 3tri_A           73 ---P------------HQIKMVCEELKDILSETKILVISLAVGVT  102 (280)
T ss_dssp             ---G------------GGHHHHHHHHHHHHHTTTCEEEECCTTCC
T ss_pred             ---H------------HHHHHHHHHHHhhccCCCeEEEEecCCCC
Confidence               2            1234555556554  46768777777766

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=98.20  E-value=3.8e-06  Score=76.45  Aligned_cols=173  Identities=13%  Similarity=0.021  Sum_probs=96.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-C---ccccccCCCCEEEEc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---QLGQALEDSDVVIIP  103 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~~a~~~aDiVIi~  103 (300)
                      .|||.|+||+|++|++++..|+..+...+|+.+|+....+....+.+......+..+.+. +   ++++++.++|+||++
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~   82 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVHL   82 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEEC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEEC
Confidence            479999999999999999999887521289999875321111112211111133333221 1   234556789999999


Q ss_pred             CCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc--cc-HHHHHHHHHHhCCCCCCcEEEeeehhH
Q 022263          104 AGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--ST-VPIAAEVFKKAGTYNEKKLFGVTTLDV  178 (300)
Q Consensus       104 ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d--~~-~~i~~~~~~~~~~~~~~kviG~t~Lds  178 (300)
                      ||.....  ..+..+.+..|+.....+++.+.+......+|.+|...-  .. ...+.|   ..+ .++...+|.+....
T Consensus        83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E---~~~-~~~~~~Y~~sK~~~  158 (336)
T 2hun_A           83 AAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTE---NDR-LMPSSPYSATKAAS  158 (336)
T ss_dssp             CCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCT---TBC-CCCCSHHHHHHHHH
T ss_pred             CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCC---CCC-CCCCCccHHHHHHH
Confidence            9864210  112345677899999999999998854456665542110  00 000000   001 22333333344444


Q ss_pred             HHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263          179 VRAKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       179 ~R~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                      .++...+++.++++..-++ +.|.|..
T Consensus       159 e~~~~~~~~~~~~~~~ilrp~~v~g~~  185 (336)
T 2hun_A          159 DMLVLGWTRTYNLNASITRCTNNYGPY  185 (336)
T ss_dssp             HHHHHHHHHHTTCEEEEEEECEEESTT
T ss_pred             HHHHHHHHHHhCCCEEEEeeeeeeCcC
Confidence            4555556666776655554 4467755

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=98.19  E-value=3.7e-06  Score=77.69  Aligned_cols=112  Identities=14%  Similarity=0.120  Sum_probs=75.0

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHh--CCCCCEEEEEecCCcc-----------cHHHHhccccCCCcEEEEecC----C
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKL--NPLVSRLALYDIANTP-----------GVAADVGHINTRSEVAGYMGN----D   88 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~--~~~~~el~L~D~~~~~-----------g~~~dl~~~~~~~~v~~~~~t----~   88 (300)
                      .++|+|.|+||+|++|++++..|+.  .+.  +|+++|+....           .....+.    ...+..+.+.    .
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~d~~   81 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKA--KVVVLDKFRSNTLFSNNRPSSLGHFKNLI----GFKGEVIAADINNPL   81 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTS--EEEEEECCCCC-------CCCCCCGGGGT----TCCSEEEECCTTCHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCC--eEEEEECCCccccccccchhhhhhhhhcc----ccCceEEECCCCCHH
Confidence            4568999999999999999999998  787  99999984321           0101111    1122222211    1


Q ss_pred             ccccc-cCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263           89 QLGQA-LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        89 d~~~a-~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +++++ ..++|+||++||.......+..+.+..|+.....+++.+++....  +|.+|
T Consensus        82 ~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~--~V~~S  137 (362)
T 3sxp_A           82 DLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK--VIYAS  137 (362)
T ss_dssp             HHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE--EEEEE
T ss_pred             HHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc--EEEeC
Confidence            23344 689999999999653333445667888999999999999877544  44444

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=98.19  E-value=1e-05  Score=78.85  Aligned_cols=104  Identities=15%  Similarity=0.085  Sum_probs=70.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      +|||.|+||+|++|++++..|+..|.  +|+.+++......           .+.. ..+....++++++|+||++|+..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~--~V~~l~R~~~~~~-----------~v~~-d~~~~~~~~l~~~D~Vih~A~~~  212 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH--EVIQLVRKEPKPG-----------KRFW-DPLNPASDLLDGADVLVHLAGEP  212 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSSCCTT-----------CEEC-CTTSCCTTTTTTCSEEEECCCC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCcc-----------ceee-cccchhHHhcCCCCEEEECCCCc
Confidence            78999999999999999999999887  9999998653211           0110 00122346789999999999865


Q ss_pred             CCC---CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          108 RKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       108 ~~~---g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ...   .....+++..|+.....+++.+.+...-..+|.+|
T Consensus       213 ~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~S  253 (516)
T 3oh8_A          213 IFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISAS  253 (516)
T ss_dssp             ----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            221   12334566779999999999855444333455444

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=98.18  E-value=5.1e-06  Score=71.32  Aligned_cols=98  Identities=21%  Similarity=0.229  Sum_probs=64.8

Q ss_pred             CCce-EEEEcCCCChHHHHHHHHH-hCCCCCEEEEEecCCc-ccHHHHhccccCCCcEEEEec--C--CccccccCCCCE
Q 022263           27 PDRK-VAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMG--N--DQLGQALEDSDV   99 (300)
Q Consensus        27 ~~~K-I~IIGaaG~VG~~~a~~L~-~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~--t--~d~~~a~~~aDi   99 (300)
                      .||| |.|+||+|++|+.++..|+ ..+.  +|+++++++. +..  ++...  ...+..+.+  +  .+++++++++|+
T Consensus         3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~--~V~~~~r~~~~~~~--~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d~   76 (221)
T 3r6d_A            3 AMYXYITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLKTRIP--PEIID--HERVTVIEGSFQNPGXLEQAVTNAEV   76 (221)
T ss_dssp             CSCSEEEEESTTSHHHHHHHHHHHHHCCC--EEEEEESSHHHHSC--HHHHT--STTEEEEECCTTCHHHHHHHHTTCSE
T ss_pred             ceEEEEEEEeCCcHHHHHHHHHHHhcCCc--eEEEEecCccccch--hhccC--CCceEEEECCCCCHHHHHHHHcCCCE
Confidence            4566 9999999999999999999 7887  8999998643 222  22101  112332221  1  234567899999


Q ss_pred             EEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       100 VIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ||.++|..             |.. .+.+++.+++.... .+|++|
T Consensus        77 vv~~ag~~-------------n~~-~~~~~~~~~~~~~~-~iv~iS  107 (221)
T 3r6d_A           77 VFVGAMES-------------GSD-MASIVKALSRXNIR-RVIGVS  107 (221)
T ss_dssp             EEESCCCC-------------HHH-HHHHHHHHHHTTCC-EEEEEE
T ss_pred             EEEcCCCC-------------Chh-HHHHHHHHHhcCCC-eEEEEe
Confidence            99999743             444 78888888776544 344443

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=98.17  E-value=5.6e-06  Score=74.36  Aligned_cols=98  Identities=19%  Similarity=0.169  Sum_probs=67.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~  108 (300)
                      |||.|+||+|+||++++..|...|+  +|+.+.+++..+.            +..  ...+ .++++++|.||.+|+.+.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~--~V~~l~R~~~~~~------------~~~--~~~~-~~~l~~~d~vihla~~~i   63 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH--EVTLVSRKPGPGR------------ITW--DELA-ASGLPSCDAAVNLAGENI   63 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTTE------------EEH--HHHH-HHCCCSCSEEEECCCCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCcCe------------eec--chhh-HhhccCCCEEEEeccCcc
Confidence            8999999999999999999999998  8998877542211            110  0011 256899999999987532


Q ss_pred             CCC-----C-cchhhhhhhHHHHHHHHHHHHhhCC-CeEEEE
Q 022263          109 KPG-----M-TRDDLFNINAGIVKDLCSAIAKYCP-NAIVNM  143 (300)
Q Consensus       109 ~~g-----~-~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv  143 (300)
                      ...     . ...+....|....+.+.+.+++... ..+++.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~  105 (298)
T 4b4o_A           64 LNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVL  105 (298)
T ss_dssp             SCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred             cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEE
Confidence            111     1 1234566788888888888877653 333443

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.17  E-value=3.4e-06  Score=76.69  Aligned_cols=115  Identities=17%  Similarity=0.086  Sum_probs=73.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc---HHHHhccccCCCcEEEEecC-C---ccccccCC--
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGYMGN-D---QLGQALED--   96 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g---~~~dl~~~~~~~~v~~~~~t-~---d~~~a~~~--   96 (300)
                      .++|||.|+||+|++|++++..|+..|.  +|+.+|++....   ...++..   ...+..+.+. +   ++.+++++  
T Consensus        12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~   86 (335)
T 1rpn_A           12 SMTRSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGI---EGDIQYEDGDMADACSVQRAVIKAQ   86 (335)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTC---GGGEEEEECCTTCHHHHHHHHHHHC
T ss_pred             ccCCeEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCCccccccchhhccc---cCceEEEECCCCCHHHHHHHHHHcC
Confidence            3568999999999999999999999886  899999865321   1122211   1123332221 1   23345554  


Q ss_pred             CCEEEEcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263           97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        97 aDiVIi~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      .|+||++|+.....  ..+..+.+..|+.....+++.+.+......+|.+|
T Consensus        87 ~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S  137 (335)
T 1rpn_A           87 PQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAS  137 (335)
T ss_dssp             CSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence            69999999864311  12344567788888999999998876434555554

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=98.16  E-value=7.6e-06  Score=76.25  Aligned_cols=110  Identities=15%  Similarity=-0.008  Sum_probs=74.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec--C--CccccccCCCCEEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG--N--DQLGQALEDSDVVII  102 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--t--~d~~~a~~~aDiVIi  102 (300)
                      +||+|.|+||+|++|++++..|+..+.  +|+++|++......  +...    .+..+.+  +  .++.++++++|+||+
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~~----~v~~~~~Dl~d~~~~~~~~~~~d~Vih   99 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMT--EDMF----CDEFHLVDLRVMENCLKVTEGVDHVFN   99 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSC--GGGT----CSEEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEECCCccchh--hccC----CceEEECCCCCHHHHHHHhCCCCEEEE
Confidence            578999999999999999999999886  89999986532111  1110    1222111  1  124567889999999


Q ss_pred             cCCCCCCC---CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          103 PAGVPRKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       103 ~ag~~~~~---g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +|+.....   .....+.+..|+.....+++.+.+.... .+|.+|
T Consensus       100 ~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~~V~~S  144 (379)
T 2c5a_A          100 LAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYAS  144 (379)
T ss_dssp             CCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             CceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            99864321   2234556778999999999998876544 344443

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.14  E-value=9.1e-06  Score=73.33  Aligned_cols=100  Identities=16%  Similarity=0.222  Sum_probs=63.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC-----CC----cEEEEecCCccccccCCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-----RS----EVAGYMGNDQLGQALEDSD   98 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~-----~~----~v~~~~~t~d~~~a~~~aD   98 (300)
                      ||||+|||+ |.+|..++..|...++  +|.++|+++....  .+.+...     +.    .+.... ..+..++++++|
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d   76 (316)
T 2ew2_A            3 AMKIAIAGA-GAMGSRLGIMLHQGGN--DVTLIDQWPAHIE--AIRKNGLIADFNGEEVVANLPIFS-PEEIDHQNEQVD   76 (316)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHHHCEEEEETTEEEEECCCEEC-GGGCCTTSCCCS
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCHHHHH--HHHhCCEEEEeCCCeeEecceeec-chhhcccCCCCC
Confidence            589999996 9999999999999887  9999998643221  1221110     00    111111 112223345999


Q ss_pred             EEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCc
Q 022263           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (300)
Q Consensus        99 iVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (300)
                      +||++...                ..+.++.+.+.++. |+.+++.++|..+
T Consensus        77 ~vi~~v~~----------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~  112 (316)
T 2ew2_A           77 LIIALTKA----------------QQLDAMFKAIQPMITEKTYVLCLLNGLG  112 (316)
T ss_dssp             EEEECSCH----------------HHHHHHHHHHGGGCCTTCEEEECCSSSC
T ss_pred             EEEEEecc----------------ccHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence            99998531                12466667777664 5788888888876

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.13  E-value=6.2e-06  Score=79.70  Aligned_cols=115  Identities=17%  Similarity=0.238  Sum_probs=72.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhC--CCCCEEEEEecCCcccHHHHhcccc---------------CCCcEEEEecCCc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHIN---------------TRSEVAGYMGNDQ   89 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~--~~~~el~L~D~~~~~g~~~dl~~~~---------------~~~~v~~~~~t~d   89 (300)
                      ++|||+|||+ |.||..++..|+..  ++  +|+++|+++.+..  .++...               ....++.   +++
T Consensus         4 ~~mkI~VIG~-G~mG~~lA~~La~~g~G~--~V~~~d~~~~~~~--~l~~g~~~i~e~~l~~~~~~~~~~~~~~---t~~   75 (467)
T 2q3e_A            4 EIKKICCIGA-GYVGGPTCSVIAHMCPEI--RVTVVDVNESRIN--AWNSPTLPIYEPGLKEVVESCRGKNLFF---STN   75 (467)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHHHCTTS--EEEEECSCHHHHH--HHTSSSCSSCCTTHHHHHHHHBTTTEEE---ESC
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhcCCCC--EEEEEECCHHHHH--HHhCCCCCcCCCCHHHHHHHhhcCCEEE---ECC
Confidence            3589999995 99999999999987  55  8999999653222  121110               0012333   356


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEe-cCCCcc
Q 022263           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNS  150 (300)
Q Consensus        90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~  150 (300)
                      +++++++||+||++...|........+ -..+...+.+.++.+.++. |+.+++.. |+|..+
T Consensus        76 ~~e~~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~  137 (467)
T 2q3e_A           76 IDDAIKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRA  137 (467)
T ss_dssp             HHHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTH
T ss_pred             HHHHHhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchH
Confidence            667889999999998766432211000 0234456677777777664 45565554 677764

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=98.11  E-value=5.4e-06  Score=75.37  Aligned_cols=116  Identities=15%  Similarity=0.009  Sum_probs=73.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-C---ccccccCC--CCEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---QLGQALED--SDVVI  101 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~~a~~~--aDiVI  101 (300)
                      .|+|.|+||+|++|++++..|+..|.  +|+++|++........+.+......+..+.+. +   ++.+++++  .|+||
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   80 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY--EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY   80 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence            46899999999999999999999887  89999986532211112211101123322111 1   23345554  59999


Q ss_pred             EcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       102 i~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ++||.....  ..+..+.+..|+.....+++.+.+......+|.+|
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  126 (345)
T 2z1m_A           81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAS  126 (345)
T ss_dssp             ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEe
Confidence            999864211  12344566778888888998888765434555554

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.11  E-value=2.5e-06  Score=74.11  Aligned_cols=96  Identities=20%  Similarity=0.211  Sum_probs=63.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEE-EecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLAL-YDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L-~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ..||||+|||+ |.+|..++..|...++  ++.+ +|+++.+...  +..... ....    +++ .++++++|+||++.
T Consensus        21 m~mmkI~IIG~-G~mG~~la~~l~~~g~--~V~~v~~r~~~~~~~--l~~~~g-~~~~----~~~-~~~~~~aDvVilav   89 (220)
T 4huj_A           21 QSMTTYAIIGA-GAIGSALAERFTAAQI--PAIIANSRGPASLSS--VTDRFG-ASVK----AVE-LKDALQADVVILAV   89 (220)
T ss_dssp             GGSCCEEEEEC-HHHHHHHHHHHHHTTC--CEEEECTTCGGGGHH--HHHHHT-TTEE----ECC-HHHHTTSSEEEEES
T ss_pred             hcCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCCHHHHHH--HHHHhC-CCcc----cCh-HHHHhcCCEEEEeC
Confidence            34689999995 9999999999999887  7888 8886543332  111100 0111    122 36689999999985


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      .    +            ..+.++++.+.. .++.+++-++||..
T Consensus        90 p----~------------~~~~~v~~~l~~-~~~~ivi~~~~g~~  117 (220)
T 4huj_A           90 P----Y------------DSIADIVTQVSD-WGGQIVVDASNAID  117 (220)
T ss_dssp             C----G------------GGHHHHHTTCSC-CTTCEEEECCCCBC
T ss_pred             C----h------------HHHHHHHHHhhc-cCCCEEEEcCCCCC
Confidence            2    1            123445555544 45778888899984

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.10  E-value=1.7e-05  Score=76.28  Aligned_cols=112  Identities=16%  Similarity=0.185  Sum_probs=75.0

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC----------------CCcEEEEecCCc
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQ   89 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~d   89 (300)
                      ....+|+|||+ |.||..+|..|+..|+  +|++||+++.+-.  .++....                +..++.   |+|
T Consensus         6 ~~~~~~~vIGl-G~vG~~~A~~La~~G~--~V~~~D~~~~kv~--~l~~g~~~~~epgl~~~~~~~~~~g~l~~---ttd   77 (446)
T 4a7p_A            6 HGSVRIAMIGT-GYVGLVSGACFSDFGH--EVVCVDKDARKIE--LLHQNVMPIYEPGLDALVASNVKAGRLSF---TTD   77 (446)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHH--HHTTTCCSSCCTTHHHHHHHHHHTTCEEE---ESC
T ss_pred             CCceEEEEEcC-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHhcCCCCccCCCHHHHHHhhcccCCEEE---ECC
Confidence            34579999995 9999999999999998  9999999764322  2222110                113443   468


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEe-cCCCcc
Q 022263           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNS  150 (300)
Q Consensus        90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~  150 (300)
                      +.+++++||+||++.+.|..++..     .-++..+++.++.|.++- ++.++|.. |-|..+
T Consensus        78 ~~ea~~~aDvvii~Vptp~~~~~~-----~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt  135 (446)
T 4a7p_A           78 LAEGVKDADAVFIAVGTPSRRGDG-----HADLSYVFAAAREIAENLTKPSVIVTKSTVPVGT  135 (446)
T ss_dssp             HHHHHTTCSEEEECCCCCBCTTTC-----CBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTH
T ss_pred             HHHHHhcCCEEEEEcCCCCccccC-----CccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchH
Confidence            878999999999998877543211     234455666777777665 45555554 445553

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=98.10  E-value=5.3e-06  Score=75.62  Aligned_cols=166  Identities=17%  Similarity=0.127  Sum_probs=94.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec----CCccccccC--CCCE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG----NDQLGQALE--DSDV   99 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~----t~d~~~a~~--~aDi   99 (300)
                      +|+|.|+||+|++|++++..|+..|.  +|+++|+....  ....++..... ..+..+.+    ..+++++++  +.|+
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~~~d~   81 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHGY--DVVIADNLVNSKREAIARIEKITG-KTPAFHETDVSDERALARIFDAHPITA   81 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSSCTHHHHHHHHHHS-CCCEEECCCTTCHHHHHHHHHHSCCCE
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCCC--cEEEEecCCcchHHHHHHHHhhcC-CCceEEEeecCCHHHHHHHHhccCCcE
Confidence            46999999999999999999999987  89999985422  12222221111 12222211    112344555  8999


Q ss_pred             EEEcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC------CCcccHHHHHHHHHHhCCCCCCcEE
Q 022263          100 VIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN------PVNSTVPIAAEVFKKAGTYNEKKLF  171 (300)
Q Consensus       100 VIi~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN------P~d~~~~i~~~~~~~~~~~~~~kvi  171 (300)
                      ||++|+.....  .....+.+..|+.....+++.+.+..... +|++|.      |.+.   .+.|   .. ..++...+
T Consensus        82 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-iv~~SS~~~~g~~~~~---~~~e---~~-~~~~~~~Y  153 (341)
T 3enk_A           82 AIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKR-IVFSSSATVYGVPERS---PIDE---TF-PLSATNPY  153 (341)
T ss_dssp             EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCE-EEEEEEGGGBCSCSSS---SBCT---TS-CCBCSSHH
T ss_pred             EEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCE-EEEEecceEecCCCCC---CCCC---CC-CCCCCChh
Confidence            99999864211  11223567789999999999998876544 444432      1000   0000   00 12233334


Q ss_pred             EeeehhHHHHHHHHHHHcC-CCCCceE-EEEEecC
Q 022263          172 GVTTLDVVRAKTFYAGKAN-VNVAEVN-VPVVGGH  204 (300)
Q Consensus       172 G~t~Lds~R~~~~la~~l~-v~~~~V~-~~v~G~h  204 (300)
                      |.+.....++...+++..+ ++..-++ ..++|.+
T Consensus       154 ~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~  188 (341)
T 3enk_A          154 GQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAH  188 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCC
T ss_pred             HHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCc
Confidence            4444444555556666664 5444444 4577765

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=98.10  E-value=2.6e-05  Score=71.02  Aligned_cols=117  Identities=12%  Similarity=0.044  Sum_probs=73.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhccccC-CCcEEEEec----CCccccccCCCCEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINT-RSEVAGYMG----NDQLGQALEDSDVV  100 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~~~-~~~v~~~~~----t~d~~~a~~~aDiV  100 (300)
                      ++++|.|+||+|++|++++..|+..|.  +|+..+++.... ...++.+... ...+..+.+    ..+++++++++|+|
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   81 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGV   81 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEE
Confidence            346899999999999999999999887  888777654321 1111211100 012322221    12355678999999


Q ss_pred             EEcCCCCCCCCCc-chhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          101 IIPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       101 Ii~ag~~~~~g~~-r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      |++|+.......+ ..+.+..|+.-...+.+.+.+...-..+|.+|
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~S  127 (337)
T 2c29_D           82 FHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTS  127 (337)
T ss_dssp             EECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred             EEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEee
Confidence            9999754211122 22467789999999999888876333555554

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=98.10  E-value=4.3e-06  Score=77.38  Aligned_cols=111  Identities=15%  Similarity=0.175  Sum_probs=73.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhC-CCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-----CccccccCCCCEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-----DQLGQALEDSDVV  100 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~~a~~~aDiV  100 (300)
                      .+|||.|+||+|++|++++..|+.. +.  +|+.+|+......  ++...   ..++.+.+.     ..+.++++++|+|
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~--~~~~~---~~v~~~~~Dl~~d~~~~~~~~~~~d~V   95 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDW--EVFGMDMQTDRLG--DLVKH---ERMHFFEGDITINKEWVEYHVKKCDVI   95 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSC--EEEEEESCCTTTG--GGGGS---TTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCC--EEEEEeCChhhhh--hhccC---CCeEEEeCccCCCHHHHHHHhccCCEE
Confidence            4679999999999999999999887 76  8999998643211  11111   133333221     1234567899999


Q ss_pred             EEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       101 Ii~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      |++|+......  .+..+.+..|+.....+++.+.+.+  ..+|.+|.
T Consensus        96 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~v~~SS  141 (372)
T 3slg_A           96 LPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST  141 (372)
T ss_dssp             EECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT--CEEEEECC
T ss_pred             EEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEeCc
Confidence            99998643211  1233456778888888899888887  45555553

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=98.09  E-value=1.1e-05  Score=74.23  Aligned_cols=110  Identities=16%  Similarity=0.120  Sum_probs=71.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCC-CCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCccccccC-----CCCEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALE-----DSDVV  100 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~~-----~aDiV  100 (300)
                      .|+|.|+||+|++|++++..|+..+ .  +|+++|.........++....    +.. ......++++++     ++|+|
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~----~~~d~~~~~~~~~~~~~~~~~~~d~V  119 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLN----IADYMDKEDFLIQIMAGEEFGDVEAI  119 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCC--CEEEEECCSSGGGGGGTTTSC----CSEEEEHHHHHHHHHTTCCCSSCCEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCc--EEEEEecCCCcchhhcccCce----EeeecCcHHHHHHHHhhcccCCCCEE
Confidence            4789999999999999999999888 5  789998754321111121111    111 111112334455     59999


Q ss_pred             EEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       101 Ii~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      |.+|+.......+..+.+..|+.....+++.+.+...  .+|.+|
T Consensus       120 ih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~--r~V~~S  162 (357)
T 2x6t_A          120 FHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  162 (357)
T ss_dssp             EECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             EECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            9999875433334456778899999999999988765  444443

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=98.07  E-value=4.7e-06  Score=75.34  Aligned_cols=108  Identities=14%  Similarity=0.103  Sum_probs=71.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC----CccccccCC--CCE
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALED--SDV   99 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~--aDi   99 (300)
                      .++++|.|+||+|++|++++..|+..|.  +|+++|++.....   +       .+..+.+.    .++.+++++  .|+
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~---l-------~~~~~~~Dl~d~~~~~~~~~~~~~d~   77 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQNV--EVFGTSRNNEAKL---P-------NVEMISLDIMDSQRVKKVISDIKPDY   77 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCTTCCC---T-------TEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccc---c-------eeeEEECCCCCHHHHHHHHHhcCCCE
Confidence            3678999999999999999999999887  8999998643211   1       12222111    123345655  899


Q ss_pred             EEEcCCCCCC--CCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          100 VIIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       100 VIi~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ||++|+....  ...+..+.+..|+.....+++.+.+......+|.+|
T Consensus        78 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  125 (321)
T 2pk3_A           78 IFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIG  125 (321)
T ss_dssp             EEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred             EEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEc
Confidence            9999986431  112345567789999999999987664345555554

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.06  E-value=7.5e-06  Score=74.73  Aligned_cols=72  Identities=10%  Similarity=0.157  Sum_probs=52.0

Q ss_pred             CCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEE
Q 022263           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        22 ~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      .....++|||+|||+ |.+|..++..|...|+  +|.++|+++.+..  ++.+.    .+..   ++++.+++++||+||
T Consensus        15 ~~~~~~m~~I~iIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~l~~~----g~~~---~~~~~~~~~~aDvvi   82 (310)
T 3doj_A           15 VPRGSHMMEVGFLGL-GIMGKAMSMNLLKNGF--KVTVWNRTLSKCD--ELVEH----GASV---CESPAEVIKKCKYTI   82 (310)
T ss_dssp             ---CCCSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGGH--HHHHT----TCEE---CSSHHHHHHHCSEEE
T ss_pred             CcccccCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHC----CCeE---cCCHHHHHHhCCEEE
Confidence            334456789999995 9999999999999998  9999999764433  22221    1222   346678899999999


Q ss_pred             EcCC
Q 022263          102 IPAG  105 (300)
Q Consensus       102 i~ag  105 (300)
                      ++..
T Consensus        83 ~~vp   86 (310)
T 3doj_A           83 AMLS   86 (310)
T ss_dssp             ECCS
T ss_pred             EEcC
Confidence            9863

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.06  E-value=7.2e-06  Score=70.12  Aligned_cols=99  Identities=21%  Similarity=0.251  Sum_probs=62.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHH--HHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA--ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      |||+||||+|.+|+.++..|...++  ++.++|+++.+...  .++........+..    ++++++++++|+||++...
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~Vi~~~~~   74 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRIAGDASITG----MKNEDAAEACDIAVLTIPW   74 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHHHHSSCCEEE----EEHHHHHHHCSEEEECSCH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccccccCCCCh----hhHHHHHhcCCEEEEeCCh
Confidence            6899999559999999999998887  89999986432211  11110000012331    2456778999999998631


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      .                .++++.+.+.+..++.+++.++|+.+
T Consensus        75 ~----------------~~~~~~~~l~~~~~~~~vi~~~~g~~  101 (212)
T 1jay_A           75 E----------------HAIDTARDLKNILREKIVVSPLVPVS  101 (212)
T ss_dssp             H----------------HHHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred             h----------------hHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence            1                12233334433335778888899776

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.05  E-value=1.4e-05  Score=73.26  Aligned_cols=68  Identities=21%  Similarity=0.319  Sum_probs=51.0

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ..+|||+|||+ |.+|..++..|...|+  +|.++|+++.+..  .+.+.    .+..   ++++++++++||+||++..
T Consensus        29 ~~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~l~~~----g~~~---~~~~~e~~~~aDvVi~~vp   96 (320)
T 4dll_A           29 PYARKITFLGT-GSMGLPMARRLCEAGY--ALQVWNRTPARAA--SLAAL----GATI---HEQARAAARDADIVVSMLE   96 (320)
T ss_dssp             CCCSEEEEECC-TTTHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHTT----TCEE---ESSHHHHHTTCSEEEECCS
T ss_pred             cCCCEEEEECc-cHHHHHHHHHHHhCCC--eEEEEcCCHHHHH--HHHHC----CCEe---eCCHHHHHhcCCEEEEECC
Confidence            35689999995 9999999999999987  8999998654322  33322    1232   2467788999999999863

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=98.05  E-value=1e-05  Score=73.82  Aligned_cols=117  Identities=15%  Similarity=0.076  Sum_probs=74.7

Q ss_pred             CCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-C---ccccccC-
Q 022263           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---QLGQALE-   95 (300)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~~a~~-   95 (300)
                      ..++..+.|+|.|+||+|++|++++..|+..|.  +|+++|++.....  ++....  ..+..+.+. +   ++.++++ 
T Consensus        13 ~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~l--~~v~~~~~Dl~d~~~~~~~~~~   86 (330)
T 2pzm_A           13 GLVPRGSHMRILITGGAGCLGSNLIEHWLPQGH--EILVIDNFATGKR--EVLPPV--AGLSVIEGSVTDAGLLERAFDS   86 (330)
T ss_dssp             -CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTC--EEEEEECCSSSCG--GGSCSC--TTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCcccCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCccch--hhhhcc--CCceEEEeeCCCHHHHHHHHhh
Confidence            444555668999999999999999999998886  8999998542111  011100  123322211 1   2345667 


Q ss_pred             -CCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263           96 -DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        96 -~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                       ++|+||++||..........+ +..|+.....+++.+.+.... .+|.+|
T Consensus        87 ~~~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~-~iV~~S  135 (330)
T 2pzm_A           87 FKPTHVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKAGVK-RLLNFQ  135 (330)
T ss_dssp             HCCSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHTCS-EEEEEE
T ss_pred             cCCCEEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence             999999999865332112223 677888889999988876543 444444

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=98.05  E-value=8.9e-06  Score=70.49  Aligned_cols=110  Identities=18%  Similarity=0.170  Sum_probs=72.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEe----cCCccccccCCCCEEEEc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~~a~~~aDiVIi~  103 (300)
                      .++|.|+||+|++|++++..|+..|...+|+++|+++.........      .+..+.    ...+++++++++|+||.+
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~------~~~~~~~D~~d~~~~~~~~~~~d~vi~~   91 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYK------NVNQEVVDFEKLDDYASAFQGHDVGFCC   91 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGG------GCEEEECCGGGGGGGGGGGSSCSEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccC------CceEEecCcCCHHHHHHHhcCCCEEEEC
Confidence            4689999999999999999999888655899999865321100001      111111    113456778899999999


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ||.... .....+.+..|......+++.+.+.... .+|++|
T Consensus        92 ag~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~iv~~S  131 (242)
T 2bka_A           92 LGTTRG-KAGAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLS  131 (242)
T ss_dssp             CCCCHH-HHHHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             CCcccc-cCCcccceeeeHHHHHHHHHHHHHCCCC-EEEEEc
Confidence            986421 1122445667888888888888776543 455554

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=98.04  E-value=9.5e-06  Score=68.16  Aligned_cols=103  Identities=14%  Similarity=0.171  Sum_probs=68.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC----CccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aDiVIi~a  104 (300)
                      |||.|+||+|++|++++..|...+.  +|+++++++....  ++.    ...+..+.+.    .++.++++++|+||.++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~--~V~~~~r~~~~~~--~~~----~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a   75 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRLP--SEG----PRPAHVVVGDVLQAADVDKTVAGQDAVIVLL   75 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGSC--SSS----CCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--eEEEEEeChhhcc--ccc----CCceEEEEecCCCHHHHHHHHcCCCEEEECc
Confidence            6999999999999999999999886  8999998643211  010    1122222111    23456789999999999


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      |.....     +....|......+++.+.+.... .+|.+|
T Consensus        76 ~~~~~~-----~~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  110 (206)
T 1hdo_A           76 GTRNDL-----SPTTVMSEGARNIVAAMKAHGVD-KVVACT  110 (206)
T ss_dssp             CCTTCC-----SCCCHHHHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             cCCCCC-----CccchHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence            865321     12246788888888888877544 344444

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=98.04  E-value=1.9e-05  Score=70.67  Aligned_cols=109  Identities=14%  Similarity=0.079  Sum_probs=71.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCC-CCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCC-----CCEEEEc
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED-----SDVVIIP  103 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~-----aDiVIi~  103 (300)
                      ||.|+||+|++|++++..|+..| .  +|++++.........++........+.   ....+++++++     +|+||++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~d~vi~~   75 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYMD---KEDFLIQIMAGEEFGDVEAIFHE   75 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCC--CEEEEECCSSGGGGHHHHTSCCSEEEE---HHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCc--EEEEEccCCCCchhhhcCcceeccccc---cHHHHHHHHhccccCCCcEEEEC
Confidence            58999999999999999999888 5  789998754322111222211101111   11223445554     9999999


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      |+.......+..+.+..|+.....+++.+.+...  .+|.+|
T Consensus        76 a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  115 (310)
T 1eq2_A           76 GACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  115 (310)
T ss_dssp             CSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             cccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            9865433334456778899999999999988765  444444

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.04  E-value=1.3e-05  Score=75.08  Aligned_cols=100  Identities=12%  Similarity=0.221  Sum_probs=67.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCC-------CCCEEEEEecCCc---ccHHHHhccc--c--------CCCcEEEEecC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNP-------LVSRLALYDIANT---PGVAADVGHI--N--------TRSEVAGYMGN   87 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~-------~~~el~L~D~~~~---~g~~~dl~~~--~--------~~~~v~~~~~t   87 (300)
                      +|||+|||+ |.+|+.++..|+..+       .  +|.++|+++.   +.....+...  .        .+..+..   +
T Consensus        21 ~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~---~   94 (375)
T 1yj8_A           21 PLKISILGS-GNWASAISKVVGTNAKNNYLFEN--EVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVA---H   94 (375)
T ss_dssp             CBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCS--CEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEE---E
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHcCCccCCCCC--eEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEE---E
Confidence            579999995 999999999998876       5  8999998654   0022222221  0        1112443   3


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHh----hC-CCeEEEEecCCCc
Q 022263           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK----YC-PNAIVNMISNPVN  149 (300)
Q Consensus        88 ~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~----~~-p~a~viv~tNP~d  149 (300)
                      +|++++++++|+||++..                ...+.++++.+..    +. |+.+++.++|..+
T Consensus        95 ~~~~ea~~~aDvVilav~----------------~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~  145 (375)
T 1yj8_A           95 SDLASVINDADLLIFIVP----------------CQYLESVLASIKESESIKIASHAKAISLTKGFI  145 (375)
T ss_dssp             SSTHHHHTTCSEEEECCC----------------HHHHHHHHHHHTC---CCCCTTCEEEECCCSCE
T ss_pred             CCHHHHHcCCCEEEEcCC----------------HHHHHHHHHHHhhhhhccCCCCCEEEEeCCccc
Confidence            466678899999999852                1346677777776    43 5888888888654

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.03  E-value=5.5e-06  Score=84.22  Aligned_cols=101  Identities=18%  Similarity=0.159  Sum_probs=68.9

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHH-----HH----hccccC---------CCcEEEEecC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-----AD----VGHINT---------RSEVAGYMGN   87 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~-----~d----l~~~~~---------~~~v~~~~~t   87 (300)
                      .+.+||+|||+ |.||..+|..++..|+  +|+++|+++.....     .+    +.....         ...++.   +
T Consensus       312 ~~i~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~  385 (715)
T 1wdk_A          312 KDVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---T  385 (715)
T ss_dssp             CCCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---E
T ss_pred             ccCCEEEEECC-ChhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEE---E
Confidence            35679999995 9999999999999998  89999997531110     00    111100         012443   3


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCc
Q 022263           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVN  149 (300)
Q Consensus        88 ~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d  149 (300)
                      +|+ +++++||+||++.              .++..+.+++..++.++++ ++++  +||...
T Consensus       386 ~d~-~~~~~aDlVIeaV--------------~e~~~vk~~v~~~l~~~~~~~~Il--asntSt  431 (715)
T 1wdk_A          386 LSY-GDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDAIL--ASNTST  431 (715)
T ss_dssp             SSS-TTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTCEE--EECCSS
T ss_pred             CCH-HHHCCCCEEEEcC--------------CCCHHHHHHHHHHHHhhCCCCeEE--EeCCCC
Confidence            466 7899999999985              3456677788888888875 6654  566554

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=98.02  E-value=9.6e-06  Score=73.13  Aligned_cols=101  Identities=18%  Similarity=0.195  Sum_probs=56.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEecCCccccccCC--CCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQALED--SDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t~d~~~a~~~--aDiVIi~a  104 (300)
                      |||.|+||+|++|++++..|+..|.  +|+++|++....  ...|+.+            ..++.+++++  +|+||++|
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~Dl~d------------~~~~~~~~~~~~~d~vih~A   68 (315)
T 2ydy_A            3 RRVLVTGATGLLGRAVHKEFQQNNW--HAVGCGFRRARPKFEQVNLLD------------SNAVHHIIHDFQPHVIVHCA   68 (315)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEC------------------------------CHHHHHHHCCSEEEECC
T ss_pred             CeEEEECCCcHHHHHHHHHHHhCCC--eEEEEccCCCCCCeEEecCCC------------HHHHHHHHHhhCCCEEEECC
Confidence            6899999999999999999999886  899998743221  1112211            1234455664  89999999


Q ss_pred             CCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          105 GVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       105 g~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      |.....  ..+..+.+..|+.....+++.+.+...  .+|.+|
T Consensus        69 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  109 (315)
T 2ydy_A           69 AERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA--FLIYIS  109 (315)
T ss_dssp             -------------------CHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             cccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            864321  123445677788888999998888753  555554

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=98.01  E-value=1.7e-05  Score=70.29  Aligned_cols=104  Identities=14%  Similarity=0.116  Sum_probs=72.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec----CCccccccCCCCEEEEc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVIIP  103 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aDiVIi~  103 (300)
                      +++|.|+||+|++|++++..|+..+.  +|++.|+++.+..         ...+..+.+    ..++.+++++.|+||++
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~--~V~~~~r~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~   71 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE--ILRLADLSPLDPA---------GPNEECVQCDLADANAVNAMVAGCDGIVHL   71 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE--EEEEEESSCCCCC---------CTTEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC--EEEEEecCCcccc---------CCCCEEEEcCCCCHHHHHHHHcCCCEEEEC
Confidence            45799999999999999999998886  8999998653221         001222111    12345678899999999


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ||...  .....+.+..|+.-...+.+.+.+.... .+|++|
T Consensus        72 Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~S  110 (267)
T 3rft_A           72 GGISV--EKPFEQILQGNIIGLYNLYEAARAHGQP-RIVFAS  110 (267)
T ss_dssp             CSCCS--CCCHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             CCCcC--cCCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            99742  2234556788999999999999877644 444443

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.01  E-value=3.4e-06  Score=78.26  Aligned_cols=93  Identities=16%  Similarity=0.197  Sum_probs=68.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~  108 (300)
                      |||.|+||+|++|++++..|+..+.. +++.+|++         .+            ..+++++++++|+||++|+...
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~-~v~~~d~~---------~d------------~~~l~~~~~~~d~Vih~a~~~~   58 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDH-HIFEVHRQ---------TK------------EEELESALLKADFIVHLAGVNR   58 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC-EEEECCTT---------CC------------HHHHHHHHHHCSEEEECCCSBC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCC-EEEEECCC---------CC------------HHHHHHHhccCCEEEECCcCCC
Confidence            79999999999999999999887743 68888763         00            1233456778999999998754


Q ss_pred             CCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      .  ....+.+..|+...+.+++.+++.+....+|.+|
T Consensus        59 ~--~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S   93 (369)
T 3st7_A           59 P--EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSS   93 (369)
T ss_dssp             T--TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEE
T ss_pred             C--CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence            2  2334456778888999999998876554555554

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=98.00  E-value=4e-06  Score=74.83  Aligned_cols=100  Identities=21%  Similarity=0.213  Sum_probs=69.6

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC--CCCEEEE
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVII  102 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~--~aDiVIi  102 (300)
                      +.+++||.|+||+|++|++++..|...|.  +|+.+|++.     .|+.+.            .++.++++  ++|+||+
T Consensus         9 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~Dl~d~------------~~~~~~~~~~~~d~vih   69 (292)
T 1vl0_A            9 HHHHMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD-----LDITNV------------LAVNKFFNEKKPNVVIN   69 (292)
T ss_dssp             ---CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT-----CCTTCH------------HHHHHHHHHHCCSEEEE
T ss_pred             ccccceEEEECCCChHHHHHHHHHHhCCC--eEEeccCcc-----CCCCCH------------HHHHHHHHhcCCCEEEE
Confidence            34678999999999999999999998886  899998742     133321            12334566  7999999


Q ss_pred             cCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          103 PAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       103 ~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +||.....  ..+..+.+..|+.....+++.+.+...  .+|.+|
T Consensus        70 ~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~S  112 (292)
T 1vl0_A           70 CAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQIS  112 (292)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             CCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEec
Confidence            99864211  123345677888888999999888754  555554

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=97.98  E-value=1.1e-05  Score=71.40  Aligned_cols=91  Identities=15%  Similarity=0.242  Sum_probs=64.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCC--CEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~--~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      +|||+|||+ |.+|+.++..|...+..  .+|.++|+++..       .     .+..   +++..++++++|+||++..
T Consensus         4 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-------~-----g~~~---~~~~~~~~~~~D~vi~~v~   67 (262)
T 2rcy_A            4 NIKLGFMGL-GQMGSALAHGIANANIIKKENLFYYGPSKKN-------T-----TLNY---MSSNEELARHCDIIVCAVK   67 (262)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-------S-----SSEE---CSCHHHHHHHCSEEEECSC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-------C-----ceEE---eCCHHHHHhcCCEEEEEeC
Confidence            479999996 99999999999887731  279999986543       1     1222   2355677889999999863


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcc
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~  150 (300)
                      .    .            .+.++++.+..+.++..++..+|.++.
T Consensus        68 ~----~------------~~~~v~~~l~~~l~~~~vv~~~~gi~~   96 (262)
T 2rcy_A           68 P----D------------IAGSVLNNIKPYLSSKLLISICGGLNI   96 (262)
T ss_dssp             T----T------------THHHHHHHSGGGCTTCEEEECCSSCCH
T ss_pred             H----H------------HHHHHHHHHHHhcCCCEEEEECCCCCH
Confidence            1    1            134555566666677888888888873

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=97.96  E-value=1.5e-05  Score=73.60  Aligned_cols=100  Identities=21%  Similarity=0.316  Sum_probs=66.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCC-------CCCEEEEEecCCc-----ccHHHHhcccc--------CCCcEEEEecC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNP-------LVSRLALYDIANT-----PGVAADVGHIN--------TRSEVAGYMGN   87 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~-------~~~el~L~D~~~~-----~g~~~dl~~~~--------~~~~v~~~~~t   87 (300)
                      +|||+|||+ |.+|..++..|+..+       .  +|.++|+++.     ....+.-.+..        .+..+..   +
T Consensus         8 ~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~   81 (354)
T 1x0v_A            8 SKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDP--RVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA---V   81 (354)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEE--EEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE---E
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCC--eEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE---E
Confidence            479999995 999999999998876       4  8999998654     22222111100        0112333   3


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCc
Q 022263           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (300)
Q Consensus        88 ~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (300)
                      ++++++++++|+||++.-.                ..+.++.+.+..+. |+.+++.++|..+
T Consensus        82 ~~~~~~~~~aD~Vilav~~----------------~~~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           82 PDVVQAAEDADILIFVVPH----------------QFIGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             SSHHHHHTTCSEEEECCCG----------------GGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             cCHHHHHcCCCEEEEeCCH----------------HHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence            4666778999999998521                12455666676654 5788888888543

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=97.95  E-value=6.5e-06  Score=72.74  Aligned_cols=103  Identities=19%  Similarity=0.203  Sum_probs=70.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec----CCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aDiVIi~a  104 (300)
                      ++|.|+||+|++|++++..|...+.  +|+++|++.....    ..     .+..+.+    ..++.++++++|+||++|
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~----~~-----~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   71 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAH--EVRLSDIVDLGAA----EA-----HEEIVACDLADAQAVHDLVKDCDGIIHLG   71 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEE--EEEECCSSCCCCC----CT-----TEEECCCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCCCcccc----CC-----CccEEEccCCCHHHHHHHHcCCCEEEECC
Confidence            4899999999999999999988875  8999988653211    00     1221111    113456788999999999


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +..  ......+.+..|+.....+++.+.+.... .+|.+|
T Consensus        72 ~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~S  109 (267)
T 3ay3_A           72 GVS--VERPWNDILQANIIGAYNLYEAARNLGKP-RIVFAS  109 (267)
T ss_dssp             SCC--SCCCHHHHHHHTHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             cCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeC
Confidence            865  22333456778998889999988876433 444443

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.95  E-value=2.5e-05  Score=71.57  Aligned_cols=99  Identities=18%  Similarity=0.211  Sum_probs=64.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhcccc----C-----CCcEEEEecCCccccccCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN----T-----RSEVAGYMGNDQLGQALED   96 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~----~-----~~~v~~~~~t~d~~~a~~~   96 (300)
                      ..+|||+|||+ |.+|..++..|+..+.  +|.++ .++....  .+....    .     +..+..   +++. +++++
T Consensus        17 ~~~~kI~IiGa-Ga~G~~~a~~L~~~G~--~V~l~-~~~~~~~--~i~~~g~~~~~~~~~~~~~~~~---~~~~-~~~~~   86 (318)
T 3hwr_A           17 FQGMKVAIMGA-GAVGCYYGGMLARAGH--EVILI-ARPQHVQ--AIEATGLRLETQSFDEQVKVSA---SSDP-SAVQG   86 (318)
T ss_dssp             ---CEEEEESC-SHHHHHHHHHHHHTTC--EEEEE-CCHHHHH--HHHHHCEEEECSSCEEEECCEE---ESCG-GGGTT
T ss_pred             ccCCcEEEECc-CHHHHHHHHHHHHCCC--eEEEE-EcHhHHH--HHHhCCeEEEcCCCcEEEeeee---eCCH-HHcCC
Confidence            35689999996 9999999999999887  89999 6432111  121110    0     111222   3455 45789


Q ss_pred             CCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcc
Q 022263           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (300)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~  150 (300)
                      +|+||++.-..                -+.++++.+..+- |+.+++.++|..+.
T Consensus        87 ~D~vilavk~~----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~  125 (318)
T 3hwr_A           87 ADLVLFCVKST----------------DTQSAALAMKPALAKSALVLSLQNGVEN  125 (318)
T ss_dssp             CSEEEECCCGG----------------GHHHHHHHHTTTSCTTCEEEEECSSSSH
T ss_pred             CCEEEEEcccc----------------cHHHHHHHHHHhcCCCCEEEEeCCCCCc
Confidence            99999985321                1355666776664 68888889999983

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=97.93  E-value=1e-05  Score=74.29  Aligned_cols=174  Identities=13%  Similarity=0.007  Sum_probs=96.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccC---CCcEEEEecC----CccccccCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINT---RSEVAGYMGN----DQLGQALEDS   97 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~---~~~v~~~~~t----~d~~~a~~~a   97 (300)
                      ++|+|.|+||+|++|++++..|+..+.  +|+++|+....  ....++.....   ...+..+.+.    .++.++++++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            467999999999999999999999887  89999985421  11112211000   0123332221    1245678899


Q ss_pred             CEEEEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeee
Q 022263           98 DVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT  175 (300)
Q Consensus        98 DiVIi~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~  175 (300)
                      |+||++|+....+.  .+..+.+..|+.....+++.+.+.... .+|.+|...-. ...-...........+...+|.+.
T Consensus       104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~-~~~~~~~~~E~~~~~~~~~Y~~sK  181 (352)
T 1sb8_A          104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTY-GDHPGLPKVEDTIGKPLSPYAVTK  181 (352)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGG-TTCCCSSBCTTCCCCCCSHHHHHH
T ss_pred             CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhc-CCCCCCCCCCCCCCCCCChhHHHH
Confidence            99999998642110  123445677888889999988876543 44444421100 000000000000011222333344


Q ss_pred             hhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263          176 LDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       176 Lds~R~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                      ....++...+++..+++..-++ +.++|..
T Consensus       182 ~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~  211 (352)
T 1sb8_A          182 YVNELYADVFSRCYGFSTIGLRYFNVFGRR  211 (352)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEECceeCcC
Confidence            4444555556666788777776 4588865

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=97.93  E-value=8.7e-06  Score=69.08  Aligned_cols=105  Identities=12%  Similarity=0.087  Sum_probs=70.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec----CCccccccCCCCEEEEc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVIIP  103 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aDiVIi~  103 (300)
                      +|||.|+||+|++|++++..|+..+...+|+++++++..      .+.    .+..+.+    ..++++++  +|+||.+
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~------~~~----~~~~~~~D~~~~~~~~~~~--~d~vi~~   72 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA------EHP----RLDNPVGPLAELLPQLDGS--IDTAFCC   72 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC------CCT----TEECCBSCHHHHGGGCCSC--CSEEEEC
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc------cCC----CceEEeccccCHHHHHHhh--hcEEEEC
Confidence            468999999999999999999998865589999886532      000    1111111    11233444  8999999


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +|.......+..+.+..|......+++.+.+.... .+|.+|
T Consensus        73 a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  113 (215)
T 2a35_A           73 LGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVS  113 (215)
T ss_dssp             CCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             eeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            98653222344566778888889999998876544 344454

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=97.93  E-value=7.1e-06  Score=72.99  Aligned_cols=96  Identities=22%  Similarity=0.260  Sum_probs=69.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC--CCCEEEEcCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~--~aDiVIi~ag~  106 (300)
                      |||.|+||+|++|++++..|...|.  +|+.+++.+     .|+.+.            .++.++++  ++|+||++|+.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~D~~d~------------~~~~~~~~~~~~d~vi~~a~~   66 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY--DIYPFDKKL-----LDITNI------------SQVQQVVQEIRPHIIIHCAAY   66 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE--EEEEECTTT-----SCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC--EEEEecccc-----cCCCCH------------HHHHHHHHhcCCCEEEECCcc
Confidence            4899999999999999999998886  899998732     233321            12334555  69999999986


Q ss_pred             CCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          107 PRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       107 ~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      .....  .+..+.+..|+.....+++.+.+.+.  .+|.+|
T Consensus        67 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S  105 (287)
T 3sc6_A           67 TKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYIS  105 (287)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             cChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            53211  24456678899999999999988865  455444

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=97.93  E-value=6.7e-06  Score=74.58  Aligned_cols=109  Identities=16%  Similarity=0.073  Sum_probs=70.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-C---ccccccC--CCCEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---QLGQALE--DSDVVI  101 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~~a~~--~aDiVI  101 (300)
                      ||||.|+||+|++|++++..|...+.  +|+.+|....... ..+..     .+..+.+. .   ++.++++  ++|+||
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~d~vi   72 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGL--SVVVVDNLQTGHE-DAITE-----GAKFYNGDLRDKAFLRDVFTQENIEAVM   72 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCT-----TSEEEECCTTCHHHHHHHHHHSCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCcCch-hhcCC-----CcEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            67999999999999999999999886  8999987542111 11211     12222111 1   2345566  899999


Q ss_pred             EcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       102 i~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ++|+.....  ..+..+.+..|+.....+++.+.+.... .+|.+|
T Consensus        73 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~S  117 (330)
T 2c20_A           73 HFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD-KFIFSS  117 (330)
T ss_dssp             ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             ECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCC-EEEEeC
Confidence            999864211  0123456678999999999998876543 444444

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=97.92  E-value=1.5e-05  Score=72.80  Aligned_cols=111  Identities=19%  Similarity=0.118  Sum_probs=70.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-C---ccccccCC--CCEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---QLGQALED--SDVV  100 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~~a~~~--aDiV  100 (300)
                      ++|+|.|+||+|++|++++..|+..|.  +|+++|++..... ..+.+.   ..+..+.+. +   ++.+++++  +|+|
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~l~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~D~v   93 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGD--KVVGIDNFATGRR-EHLKDH---PNLTFVEGSIADHALVNQLIGDLQPDAV   93 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCCC---TTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCCccch-hhHhhc---CCceEEEEeCCCHHHHHHHHhccCCcEE
Confidence            468999999999999999999999886  8999998542111 011111   123322211 1   23455677  9999


Q ss_pred             EEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       101 Ii~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      |.+||..........+ +..|+.....+++.+.+.... .+|.+|
T Consensus        94 ih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~-~iV~~S  136 (333)
T 2q1w_A           94 VHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNNVG-RFVYFQ  136 (333)
T ss_dssp             EECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             EECceecCCCccCChH-HHHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence            9999865332111222 677888888899888875433 444444

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=97.92  E-value=8.2e-06  Score=76.13  Aligned_cols=119  Identities=15%  Similarity=0.127  Sum_probs=72.0

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc------------------HHHHhccccCCCcEEEEec
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG------------------VAADVGHINTRSEVAGYMG   86 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g------------------~~~dl~~~~~~~~v~~~~~   86 (300)
                      ...+++|.|+||+|++|++++..|+..|.  +|+++|......                  ...++.+.. ...+..+.+
T Consensus         8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~~~   84 (404)
T 1i24_A            8 HHHGSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVG   84 (404)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEES
T ss_pred             ccCCCeEEEeCCCcHHHHHHHHHHHhCCC--eEEEEEecCccccccccccccccccchhhhhhhhHhhcc-CCceEEEEC
Confidence            34678999999999999999999999887  899998742110                  011111000 112332222


Q ss_pred             C-C---ccccccCC--CCEEEEcCCCCCCCC--Ccc---hhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263           87 N-D---QLGQALED--SDVVIIPAGVPRKPG--MTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        87 t-~---d~~~a~~~--aDiVIi~ag~~~~~g--~~r---~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      . .   ++.+++++  +|+||++||....+.  .+.   ...+..|+.....+++.+.+.+....+|.+|.
T Consensus        85 Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS  155 (404)
T 1i24_A           85 DICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGT  155 (404)
T ss_dssp             CTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence            1 1   23445666  999999998642110  111   12567799999999999988765335555543

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=97.91  E-value=3.1e-05  Score=70.38  Aligned_cols=109  Identities=16%  Similarity=0.120  Sum_probs=70.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhC-CCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-C----ccccccCCCCEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D----QLGQALEDSDVVII  102 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~----d~~~a~~~aDiVIi  102 (300)
                      |||.|+||+|++|++++..|+.. +.  +|+++|+......  ++..   ...+..+.+. +    .++++++++|+||+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~--~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~d~vih   73 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAIS--RFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLP   73 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESCCGGGG--GGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC--EEEEEeCCcchHH--Hhhc---CCCeEEEeccccCcHHHHHhhccCCCEEEE
Confidence            68999999999999999999987 66  8999998653211  1111   1123332211 1    13446778999999


Q ss_pred             cCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          103 PAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       103 ~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +|+.....  ..+..+.+..|+.....+++.+.+..  ..+|.+|.
T Consensus        74 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~SS  117 (345)
T 2bll_A           74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPST  117 (345)
T ss_dssp             CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             cccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEec
Confidence            99864211  01233456678888888888887765  45555553

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.91  E-value=2.3e-05  Score=70.48  Aligned_cols=66  Identities=11%  Similarity=0.186  Sum_probs=49.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      .|||+|||+ |.+|..++..|...++  +|+++|+++.+..  .+.+.    .+..   ++++++++++||+||++..
T Consensus         1 s~~i~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~----g~~~---~~~~~~~~~~aDvvi~~vp   66 (287)
T 3pef_A            1 SQKFGFIGL-GIMGSAMAKNLVKAGC--SVTIWNRSPEKAE--ELAAL----GAER---AATPCEVVESCPVTFAMLA   66 (287)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGGH--HHHHT----TCEE---CSSHHHHHHHCSEEEECCS
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHC----CCee---cCCHHHHHhcCCEEEEEcC
Confidence            379999995 9999999999999987  9999999764333  22222    1222   3467788899999999853

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=97.91  E-value=2.8e-05  Score=70.07  Aligned_cols=113  Identities=11%  Similarity=-0.025  Sum_probs=68.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec-CCc---ccH-HHHhccccCCCcEEEEec----CCccccccCCCCE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANT---PGV-AADVGHINTRSEVAGYMG----NDQLGQALEDSDV   99 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~-~~~---~g~-~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aDi   99 (300)
                      ++|.|+||+|++|++++..|+..|.  +|+.+++ +..   ... ..++...  ...+..+.+    ..+++++++++|+
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~   77 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGY--SVNTTIRADPERKRDVSFLTNLPGA--SEKLHFFNADLSNPDSFAAAIEGCVG   77 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEECCCC----CCCHHHHTSTTH--HHHEEECCCCTTCGGGGHHHHTTCSE
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCC--EEEEEEeCCccchhHHHHHHhhhcc--CCceEEEecCCCCHHHHHHHHcCCCE
Confidence            5899999999999999999999887  8888776 331   111 1111100  001222111    1245567899999


Q ss_pred             EEEcCCCCCCCCCc-chhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          100 VIIPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       100 VIi~ag~~~~~g~~-r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ||++|+.......+ ..+.+..|+.-...+++.+.+...-..+|.+|
T Consensus        78 vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~S  124 (322)
T 2p4h_X           78 IFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTS  124 (322)
T ss_dssp             EEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEE
T ss_pred             EEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence            99999643111111 23467789999999999888762123445443

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.91  E-value=1.9e-05  Score=70.34  Aligned_cols=97  Identities=14%  Similarity=0.049  Sum_probs=65.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhC-CCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC----CccccccCCCCEEEEc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVIIP  103 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aDiVIi~  103 (300)
                      |||.|+||+|++|++++..|... +.  +|++++++..+..  ++...    .++.+.+.    .++.++++++|+||++
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~--~V~~~~R~~~~~~--~~~~~----~v~~~~~D~~d~~~l~~~~~~~d~vi~~   72 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID--HFHIGVRNVEKVP--DDWRG----KVSVRQLDYFNQESMVEAFKGMDTVVFI   72 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT--TEEEEESSGGGSC--GGGBT----TBEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC--cEEEEECCHHHHH--HhhhC----CCEEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence            68999999999999999998886 65  7899888653221  12111    22222211    2356789999999999


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEE
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~v  141 (300)
                      ++....        ...|....+.+++.+++.+..-++
T Consensus        73 a~~~~~--------~~~~~~~~~~l~~aa~~~gv~~iv  102 (289)
T 3e48_A           73 PSIIHP--------SFKRIPEVENLVYAAKQSGVAHII  102 (289)
T ss_dssp             CCCCCS--------HHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCcc--------chhhHHHHHHHHHHHHHcCCCEEE
Confidence            875321        134777888889888887644343

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.90  E-value=5e-05  Score=69.49  Aligned_cols=118  Identities=14%  Similarity=0.148  Sum_probs=69.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHH---hccccCCCcEEE--EecCCccccccCCCCEEEEc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAAD---VGHINTRSEVAG--YMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~d---l~~~~~~~~v~~--~~~t~d~~~a~~~aDiVIi~  103 (300)
                      |||+|||+ |.+|..++..|...+.  +|.++|+++.+....+   +...... ....  ...+++.+++.+++|+||++
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~~~i~~~Gl~~~~~~~g-~~~~~~~~~~~~~~~~~~~~DlVila   78 (320)
T 3i83_A            3 LNILVIGT-GAIGSFYGALLAKTGH--CVSVVSRSDYETVKAKGIRIRSATLG-DYTFRPAAVVRSAAELETKPDCTLLC   78 (320)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHTTC--EEEEECSTTHHHHHHHCEEEEETTTC-CEEECCSCEESCGGGCSSCCSEEEEC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCChHHHHHhCCcEEeecCCC-cEEEeeeeeECCHHHcCCCCCEEEEe
Confidence            79999996 9999999999999887  9999998652111000   1110111 1111  01124555555699999998


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      .-..    .            +.++++.+..+ .++..++.+.|-.+..-.    +.+.   +|.+++++-
T Consensus        79 vK~~----~------------~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~----l~~~---~~~~~vl~g  126 (320)
T 3i83_A           79 IKVV----E------------GADRVGLLRDAVAPDTGIVLISNGIDIEPE----VAAA---FPDNEVISG  126 (320)
T ss_dssp             CCCC----T------------TCCHHHHHTTSCCTTCEEEEECSSSSCSHH----HHHH---STTSCEEEE
T ss_pred             cCCC----C------------hHHHHHHHHhhcCCCCEEEEeCCCCChHHH----HHHH---CCCCcEEEE
Confidence            6322    1            11233444444 367888889998874321    2222   666777743

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.90  E-value=1.8e-05  Score=72.87  Aligned_cols=96  Identities=18%  Similarity=0.259  Sum_probs=61.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC----CC---cEEEEecCCccccccCCCCE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----RS---EVAGYMGNDQLGQALEDSDV   99 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~----~~---~v~~~~~t~d~~~a~~~aDi   99 (300)
                      -+|||+|||+ |.+|+.++..|+..|.  +|.++|+++.+..  .+.....    +.   .+..   +++..+ ++++|+
T Consensus        13 ~~~kI~iIG~-G~mG~ala~~L~~~G~--~V~~~~r~~~~~~--~l~~~g~~~~~~~~~~~~~~---~~~~~~-~~~aDv   83 (335)
T 1z82_A           13 MEMRFFVLGA-GSWGTVFAQMLHENGE--EVILWARRKEIVD--LINVSHTSPYVEESKITVRA---TNDLEE-IKKEDI   83 (335)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHH--HHHHHSCBTTBTTCCCCSEE---ESCGGG-CCTTEE
T ss_pred             cCCcEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHH--HHHHhCCcccCCCCeeeEEE---eCCHHH-hcCCCE
Confidence            4689999995 9999999999999887  9999998643222  2222110    00   1232   245656 899999


Q ss_pred             EEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       100 VIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      ||++...                ..+.++++.+..  ++.++|.++|..+
T Consensus        84 Vil~vk~----------------~~~~~v~~~l~~--~~~~vv~~~nGi~  115 (335)
T 1z82_A           84 LVIAIPV----------------QYIREHLLRLPV--KPSMVLNLSKGIE  115 (335)
T ss_dssp             EEECSCG----------------GGHHHHHTTCSS--CCSEEEECCCCCC
T ss_pred             EEEECCH----------------HHHHHHHHHhCc--CCCEEEEEeCCCC
Confidence            9998531                113334433433  6677777777644

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.90  E-value=2.7e-05  Score=69.00  Aligned_cols=96  Identities=14%  Similarity=0.208  Sum_probs=63.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      ++|||+|||+ |.+|..++..|...++ ..+.++|+++....  .+....   .+..   +++++++++++|+||++...
T Consensus         9 ~~m~i~iiG~-G~mG~~~a~~l~~~g~-~~v~~~~~~~~~~~--~~~~~~---g~~~---~~~~~~~~~~~Dvvi~av~~   78 (266)
T 3d1l_A            9 EDTPIVLIGA-GNLATNLAKALYRKGF-RIVQVYSRTEESAR--ELAQKV---EAEY---TTDLAEVNPYAKLYIVSLKD   78 (266)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHHHTC-CEEEEECSSHHHHH--HHHHHT---TCEE---ESCGGGSCSCCSEEEECCCH
T ss_pred             CCCeEEEEcC-CHHHHHHHHHHHHCCC-eEEEEEeCCHHHHH--HHHHHc---CCce---eCCHHHHhcCCCEEEEecCH
Confidence            3579999995 9999999999988776 23899998653222  222211   1222   23566778999999998521


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (300)
                                    +  .+.++++.+.+.. ++.+++..++-.
T Consensus        79 --------------~--~~~~v~~~l~~~~~~~~ivv~~s~~~  105 (266)
T 3d1l_A           79 --------------S--AFAELLQGIVEGKREEALMVHTAGSI  105 (266)
T ss_dssp             --------------H--HHHHHHHHHHTTCCTTCEEEECCTTS
T ss_pred             --------------H--HHHHHHHHHHhhcCCCcEEEECCCCC
Confidence                          1  1356666776655 678888777643

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.89  E-value=3.4e-05  Score=69.28  Aligned_cols=96  Identities=16%  Similarity=0.168  Sum_probs=61.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      ++|||+|||+ |.+|..++..|...+...+|.++|+++....  .+......  ...   +++++++++++|+||++...
T Consensus         5 ~~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~--~~~~~g~~--~~~---~~~~~~~~~~aDvVilavp~   76 (290)
T 3b1f_A            5 EEKTIYIAGL-GLIGASLALGIKRDHPHYKIVGYNRSDRSRD--IALERGIV--DEA---TADFKVFAALADVIILAVPI   76 (290)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSSHHHHH--HHHHTTSC--SEE---ESCTTTTGGGCSEEEECSCH
T ss_pred             ccceEEEEee-CHHHHHHHHHHHhCCCCcEEEEEcCCHHHHH--HHHHcCCc--ccc---cCCHHHhhcCCCEEEEcCCH
Confidence            3579999995 9999999999987643238999998643222  22221110  011   23556778999999998631


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhh--CCCeEEEEecC
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY--CPNAIVNMISN  146 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~--~p~a~viv~tN  146 (300)
                                      ....++++.+..+  .++.+++.++|
T Consensus        77 ----------------~~~~~v~~~l~~~~l~~~~ivi~~~~  102 (290)
T 3b1f_A           77 ----------------KKTIDFIKILADLDLKEDVIITDAGS  102 (290)
T ss_dssp             ----------------HHHHHHHHHHHTSCCCTTCEEECCCS
T ss_pred             ----------------HHHHHHHHHHHhcCCCCCCEEEECCC
Confidence                            1135566667665  35777765555

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=97.89  E-value=6.1e-05  Score=72.68  Aligned_cols=117  Identities=18%  Similarity=0.141  Sum_probs=77.1

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhC---CCCCEEEEEecCCcccHH-HHhcccc--------------CCCcEEEEec
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLN---PLVSRLALYDIANTPGVA-ADVGHIN--------------TRSEVAGYMG   86 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~---~~~~el~L~D~~~~~g~~-~dl~~~~--------------~~~~v~~~~~   86 (300)
                      ..++|+|.|+||+|++|++++..|+..   +.  +|+++++.+..... ..+.+..              ....+..+.+
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~--~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~  147 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDG--RLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAG  147 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTC--EEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEEC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCC--EEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEe
Confidence            346789999999999999999988887   44  89999986532111 1111110              0123444332


Q ss_pred             CC----------ccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263           87 ND----------QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        87 t~----------d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      .-          ++.+.++++|+||++|+....  ....+.+..|+.....+++.+.+...+-++.+-|
T Consensus       148 Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS  214 (478)
T 4dqv_A          148 DKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTTKLKPFTYVST  214 (478)
T ss_dssp             CTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred             ECCCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence            21          234556799999999987533  3344667889999999999988766555544433

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=97.89  E-value=8e-06  Score=73.63  Aligned_cols=163  Identities=17%  Similarity=0.082  Sum_probs=89.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec--C--CccccccC--CCCEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG--N--DQLGQALE--DSDVVII  102 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--t--~d~~~a~~--~aDiVIi  102 (300)
                      |||.|+||+|++|++++..|+..|.  +|+++|....... ..+..     .+..+.+  +  .+++++++  ++|+||+
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~-~~~~~-----~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~   72 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGL--EVAVLDNLATGKR-ENVPK-----GVPFFRVDLRDKEGVERAFREFRPTHVSH   72 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEECCCSSCCG-GGSCT-----TCCEECCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCCcCch-hhccc-----CeEEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence            6899999999999999999999887  8999987331110 11111     1111111  1  12334566  8999999


Q ss_pred             cCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHH-----HHHHhCCCCCCcEEEeee
Q 022263          103 PAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE-----VFKKAGTYNEKKLFGVTT  175 (300)
Q Consensus       103 ~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~-----~~~~~~~~~~~kviG~t~  175 (300)
                      +|+.....  ..+....+..|+.....+++.+.+.... .+|.+|....    +...     ........++...+|.+.
T Consensus        73 ~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~SS~~~----~~g~~~~~~~~~E~~~~~~~~~Y~~sK  147 (311)
T 2p5y_A           73 QAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVE-KLVFASTGGA----IYGEVPEGERAEETWPPRPKSPYAASK  147 (311)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEHHH----HHCCCCTTCCBCTTSCCCCCSHHHHHH
T ss_pred             CccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeCCChh----hcCCCCCCCCcCCCCCCCCCChHHHHH
Confidence            99864211  0123345677888888899888876543 4444432100    0000     000000011222333344


Q ss_pred             hhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263          176 LDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       176 Lds~R~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                      ....++...+++..+++..-++ ..++|..
T Consensus       148 ~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~  177 (311)
T 2p5y_A          148 AAFEHYLSVYGQSYGLKWVSLRYGNVYGPR  177 (311)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeeccccCcC
Confidence            4444555556666777666665 4577754

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=97.89  E-value=7.1e-06  Score=73.36  Aligned_cols=99  Identities=16%  Similarity=0.173  Sum_probs=67.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCC--CCEEEEcCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED--SDVVIIPAGV  106 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~--aDiVIi~ag~  106 (300)
                      |||.|+||+|++|++++..|. .+.  +|+.+|++.. ....|+.+.            .++.+++++  +|+||++|+.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~--~V~~~~r~~~-~~~~D~~d~------------~~~~~~~~~~~~d~vih~a~~   64 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVG--NLIALDVHSK-EFCGDFSNP------------KGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTS--EEEEECTTCS-SSCCCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCC--eEEEeccccc-cccccCCCH------------HHHHHHHHhcCCCEEEECccc
Confidence            689999999999999999888 676  8999987541 111122211            123455665  9999999986


Q ss_pred             CCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          107 PRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       107 ~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ....  ..+..+.+..|+.....+++.+.+...  .+|.+|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  103 (299)
T 1n2s_A           65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYS  103 (299)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEE
T ss_pred             CCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Confidence            4311  123445677899999999998887653  455554

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=97.89  E-value=1.5e-05  Score=74.14  Aligned_cols=171  Identities=13%  Similarity=0.057  Sum_probs=96.0

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCC-CCCEEEEEecCCcccHHHHhccccCCCcEEEEecC----CccccccCCCCEE
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVV  100 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aDiV  100 (300)
                      .++|+|.|+||+|++|++++..|+..+ .  +|+++|+...... ..+..   ...+..+.+.    .++.++++++|+|
T Consensus        30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~-~~l~~---~~~v~~~~~Dl~d~~~l~~~~~~~d~V  103 (377)
T 2q1s_A           30 LANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVVDNLLSAEK-INVPD---HPAVRFSETSITDDALLASLQDEYDYV  103 (377)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTCS--EEEEECCCTTCCG-GGSCC---CTTEEEECSCTTCHHHHHHCCSCCSEE
T ss_pred             hCCCEEEEECCccHHHHHHHHHHHHcCCc--eEEEEECCCCCch-hhccC---CCceEEEECCCCCHHHHHHHhhCCCEE
Confidence            356899999999999999999999888 6  8999988543211 01110   1133332211    1244678899999


Q ss_pred             EEcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCcccHHHHHHHHH--HhC---CC-CCCcEE
Q 022263          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFK--KAG---TY-NEKKLF  171 (300)
Q Consensus       101 Ii~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~~~i~~~~~~--~~~---~~-~~~kvi  171 (300)
                      |++|+.....  ..+..+.+..|+.....+++.+.+. ... .+|.+|... +...--.....  ...   .. ++...+
T Consensus       104 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~~V~~SS~~-vyg~~~~~~~~~~E~~~~~~~~~~~~~Y  181 (377)
T 2q1s_A          104 FHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLK-KVVYSAAGC-SIAEKTFDDAKATEETDIVSLHNNDSPY  181 (377)
T ss_dssp             EECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCC-EEEEEEEC---------------CCCCCCCSSCCCSHH
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEeCCHH-HcCCCCCCCcCcccccccccccCCCCch
Confidence            9999864211  0123456678888889999988775 333 444444321 00000000000  000   01 222333


Q ss_pred             EeeehhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263          172 GVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       172 G~t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                      |.+.....++...+++..+++..-++ +.++|..
T Consensus       182 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~  215 (377)
T 2q1s_A          182 SMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPG  215 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCC
Confidence            33444444555556666677766665 4577865

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.88  E-value=2.1e-05  Score=72.22  Aligned_cols=99  Identities=16%  Similarity=0.184  Sum_probs=65.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCC--CEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~--~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ++|||+|||+ |.+|..++..|...++.  .+|.++|+++.......+...    .++.   +++..++++++|+||++.
T Consensus        21 ~~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~----G~~~---~~~~~e~~~~aDvVilav   92 (322)
T 2izz_A           21 QSMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKM----GVKL---TPHNKETVQHSDVLFLAV   92 (322)
T ss_dssp             -CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHH----TCEE---ESCHHHHHHHCSEEEECS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHc----CCEE---eCChHHHhccCCEEEEEe
Confidence            4579999995 99999999999988731  279999986531122223321    1232   134557789999999986


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCc
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (300)
                      - +               ..+.++++.+.... |+.++|.++|...
T Consensus        93 ~-~---------------~~~~~vl~~l~~~l~~~~ivvs~s~gi~  122 (322)
T 2izz_A           93 K-P---------------HIIPFILDEIGADIEDRHIVVSCAAGVT  122 (322)
T ss_dssp             C-G---------------GGHHHHHHHHGGGCCTTCEEEECCTTCC
T ss_pred             C-H---------------HHHHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence            3 1               12445555666554 5788888888876

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=97.87  E-value=4.5e-05  Score=66.21  Aligned_cols=104  Identities=18%  Similarity=0.157  Sum_probs=66.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc---HHHHhccccCCCcEEEEecCCcccccc----CCCCEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGYMGNDQLGQAL----EDSDVV  100 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g---~~~dl~~~~~~~~v~~~~~t~d~~~a~----~~aDiV  100 (300)
                      |++|.|+||+|++|++++..|+..+.  +|+++|++....   ...|+.+..            ++++++    .+.|+|
T Consensus         1 Mk~vlVtGasg~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~D~~~~~------------~~~~~~~~~~~~~d~v   66 (255)
T 2dkn_A            1 MSVIAITGSASGIGAALKELLARAGH--TVIGIDRGQADIEADLSTPGGRET------------AVAAVLDRCGGVLDGL   66 (255)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHHH------------HHHHHHHHHTTCCSEE
T ss_pred             CcEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCChhHccccccCCcccHH------------HHHHHHHHcCCCccEE
Confidence            35799999999999999999999887  899999865321   122333211            122233    489999


Q ss_pred             EEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh---CCCeEEEEecC
Q 022263          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (300)
Q Consensus       101 Ii~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (300)
                      |.+||.... .....+.+..|..-...+.+.+.+.   ...+.+|++|.
T Consensus        67 i~~Ag~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS  114 (255)
T 2dkn_A           67 VCCAGVGVT-AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGS  114 (255)
T ss_dssp             EECCCCCTT-SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred             EECCCCCCc-chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEec
Confidence            999997542 2234456667776666666655544   22355666643

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.86  E-value=3.1e-05  Score=66.98  Aligned_cols=112  Identities=16%  Similarity=0.099  Sum_probs=70.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhC--CCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCccccccCCCCEEEEc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~--~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~~~aDiVIi~  103 (300)
                      .+++|.|+||+|++|++++..|+..  +.  +|+++++++...  .++... . ..+.. .....+++++++++|+||++
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~--~V~~~~r~~~~~--~~~~~~-~-~~~~~D~~d~~~~~~~~~~~d~vi~~   76 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF--VAKGLVRSAQGK--EKIGGE-A-DVFIGDITDADSINPAFQGIDALVIL   76 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC--EEEEEESCHHHH--HHTTCC-T-TEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc--EEEEEEcCCCch--hhcCCC-e-eEEEecCCCHHHHHHHHcCCCEEEEe
Confidence            4679999999999999999999988  55  899998854221  122110 0 01111 00012355678999999999


Q ss_pred             CCCCCC------------CCCc---chhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          104 AGVPRK------------PGMT---RDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       104 ag~~~~------------~g~~---r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ||....            +...   -.+.+..|......+++.+.+.... .+|++|
T Consensus        77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  132 (253)
T 1xq6_A           77 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVG  132 (253)
T ss_dssp             CCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEE
T ss_pred             ccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            986421            1110   0124567888888999998887544 444443

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.86  E-value=0.0001  Score=65.79  Aligned_cols=96  Identities=15%  Similarity=0.245  Sum_probs=60.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC-CCCEEEEcCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPAGV  106 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~-~aDiVIi~ag~  106 (300)
                      |+||+|||+ |.+|..++..|...++..+|+++|.++....  .+.....  ....   +++++++++ ++|+||++...
T Consensus         1 m~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~--~~~~~g~--~~~~---~~~~~~~~~~~aDvVilavp~   72 (281)
T 2g5c_A            1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESIS--KAVDLGI--IDEG---TTSIAKVEDFSPDFVMLSSPV   72 (281)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHH--HHHHTTS--CSEE---ESCGGGGGGTCCSEEEECSCH
T ss_pred             CcEEEEEec-CHHHHHHHHHHHhcCCCcEEEEEeCCHHHHH--HHHHCCC--cccc---cCCHHHHhcCCCCEEEEcCCH
Confidence            479999995 9999999999998876447999998643222  1221111  1111   235667888 99999998531


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCC
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNP  147 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP  147 (300)
                      .                ...++++.+..+ .|+++++.++|.
T Consensus        73 ~----------------~~~~v~~~l~~~l~~~~iv~~~~~~   98 (281)
T 2g5c_A           73 R----------------TFREIAKKLSYILSEDATVTDQGSV   98 (281)
T ss_dssp             H----------------HHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             H----------------HHHHHHHHHHhhCCCCcEEEECCCC
Confidence            1                122444445444 467777776653

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.84  E-value=6.7e-05  Score=67.88  Aligned_cols=91  Identities=20%  Similarity=0.329  Sum_probs=61.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      +|||+|||+ |.+|..++..|...++  +|.++|+++.+...  +.+.    .++.   +++++++++ ||+||++...+
T Consensus        15 ~~~I~vIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~--~~~~----g~~~---~~~~~~~~~-aDvvi~~vp~~   81 (296)
T 3qha_A           15 QLKLGYIGL-GNMGAPMATRMTEWPG--GVTVYDIRIEAMTP--LAEA----GATL---ADSVADVAA-ADLIHITVLDD   81 (296)
T ss_dssp             CCCEEEECC-STTHHHHHHHHTTSTT--CEEEECSSTTTSHH--HHHT----TCEE---CSSHHHHTT-SSEEEECCSSH
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHH--HHHC----CCEE---cCCHHHHHh-CCEEEEECCCh
Confidence            469999995 9999999999999887  89999997654332  2221    1222   356778888 99999986321


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (300)
                                     ..++++.+.+.+.. |+.+++..|+
T Consensus        82 ---------------~~~~~v~~~l~~~l~~g~ivv~~st  106 (296)
T 3qha_A           82 ---------------AQVREVVGELAGHAKPGTVIAIHST  106 (296)
T ss_dssp             ---------------HHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred             ---------------HHHHHHHHHHHHhcCCCCEEEEeCC
Confidence                           22344445555544 5666665543

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=97.83  E-value=4.3e-05  Score=68.08  Aligned_cols=98  Identities=19%  Similarity=0.207  Sum_probs=64.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCC-C--cEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR-S--EVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~-~--~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |||+|||+ |.+|+.++..|...++  +|.++|+++.+..  ++...... .  .....  .++ .++++++|+||++..
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~--~l~~~~~~~~~~~~~~~--~~~-~~~~~~~d~vi~~v~   72 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYC--SVNLVETDGSIFNESLT--AND-PDFLATSDLLLVTLK   72 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEE--EEEEECTTSCEEEEEEE--ESC-HHHHHTCSEEEECSC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCcccee--eEEEEcCCCceeeeeee--ecC-ccccCCCCEEEEEec
Confidence            69999996 9999999999999887  9999998653222  12211100 0  11111  123 367889999999864


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcc
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~  150 (300)
                      ..            .    +.++++.+..+. |+.+++.++|..+.
T Consensus        73 ~~------------~----~~~v~~~l~~~l~~~~~vv~~~~g~~~  102 (291)
T 1ks9_A           73 AW------------Q----VSDAVKSLASTLPVTTPILLIHNGMGT  102 (291)
T ss_dssp             GG------------G----HHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred             HH------------h----HHHHHHHHHhhCCCCCEEEEecCCCCc
Confidence            21            0    345556666553 57888888998763

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.83  E-value=8.1e-05  Score=62.11  Aligned_cols=137  Identities=11%  Similarity=0.046  Sum_probs=79.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhC-CCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCC--ccccc--cCCCCEEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND--QLGQA--LEDSDVVII  102 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~--d~~~a--~~~aDiVIi  102 (300)
                      .++|.|+|+ |.+|..++..|... +.  +++++|.++.+..  .+.....  .+..-..++  .+.++  ++++|+||+
T Consensus        39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~--~V~vid~~~~~~~--~~~~~g~--~~~~gd~~~~~~l~~~~~~~~ad~vi~  111 (183)
T 3c85_A           39 HAQVLILGM-GRIGTGAYDELRARYGK--ISLGIEIREEAAQ--QHRSEGR--NVISGDATDPDFWERILDTGHVKLVLL  111 (183)
T ss_dssp             TCSEEEECC-SHHHHHHHHHHHHHHCS--CEEEEESCHHHHH--HHHHTTC--CEEECCTTCHHHHHTBCSCCCCCEEEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhccCC--eEEEEECCHHHHH--HHHHCCC--CEEEcCCCCHHHHHhccCCCCCCEEEE
Confidence            468999995 99999999999887 87  8999998653322  2222111  111101111  13344  789999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHH
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK  182 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~  182 (300)
                      +.+..           ..|.    .++..+++.+|+..++..+|-.+     ..+.++..|   .+.++.-...-..++.
T Consensus       112 ~~~~~-----------~~~~----~~~~~~~~~~~~~~ii~~~~~~~-----~~~~l~~~G---~~~vi~p~~~~a~~l~  168 (183)
T 3c85_A          112 AMPHH-----------QGNQ----TALEQLQRRNYKGQIAAIAEYPD-----QLEGLLESG---VDAAFNIYSEAGSGFA  168 (183)
T ss_dssp             CCSSH-----------HHHH----HHHHHHHHTTCCSEEEEEESSHH-----HHHHHHHHT---CSEEEEHHHHHHHHHH
T ss_pred             eCCCh-----------HHHH----HHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHcC---CCEEEchHHHHHHHHH
Confidence            85421           2233    34456667778777766655333     123445544   4556554443344455


Q ss_pred             HHHHHHcCCCCC
Q 022263          183 TFYAGKANVNVA  194 (300)
Q Consensus       183 ~~la~~l~v~~~  194 (300)
                      ..+.+.++.+..
T Consensus       169 ~~~~~~~~~~~~  180 (183)
T 3c85_A          169 RHVCKQLEPQFT  180 (183)
T ss_dssp             HHHHHHHCCCCC
T ss_pred             HHHHHhcCCccc
Confidence            555566655443

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=97.83  E-value=2.2e-05  Score=70.86  Aligned_cols=99  Identities=12%  Similarity=0.087  Sum_probs=68.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC--CCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~--~aDiVIi~ag  105 (300)
                      +|||.|+||+|++|++++..|...+.  ++++++...    ..|+.+.            .++.++++  ++|+||++|+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~--~v~~~~r~~----~~D~~d~------------~~~~~~~~~~~~d~vih~a~   64 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRD----ELNLLDS------------RAVHDFFASERIDQVYLAAA   64 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTT----TCCTTCH------------HHHHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--eEEEEecCc----cCCccCH------------HHHHHHHHhcCCCEEEEcCe
Confidence            47999999999999999999998887  788876532    1233221            12345566  8999999998


Q ss_pred             CCCCC---CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          106 VPRKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       106 ~~~~~---g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      .....   ..+..+.+..|+.....+++.+.+.... .+|.+|
T Consensus        65 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  106 (321)
T 1e6u_A           65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLG  106 (321)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             ecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEc
Confidence            64211   1123456778999999999998876543 455554

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.82  E-value=3.4e-05  Score=70.01  Aligned_cols=68  Identities=16%  Similarity=0.087  Sum_probs=49.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      .+|||+|||+ |.+|..++..|...|+  +|.++|+++.+..  .+....    ....  ++++++++++||+||++..
T Consensus         6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~~--~~~~~e~~~~aDvvi~~vp   73 (303)
T 3g0o_A            6 TDFHVGIVGL-GSMGMGAARSCLRAGL--STWGADLNPQACA--NLLAEG----ACGA--AASAREFAGVVDALVILVV   73 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHHTT----CSEE--ESSSTTTTTTCSEEEECCS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHHHH--HHHHcC----Cccc--cCCHHHHHhcCCEEEEECC
Confidence            3579999995 9999999999999998  9999998653222  233221    1111  2356688999999999864

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=97.82  E-value=2.9e-05  Score=69.79  Aligned_cols=109  Identities=18%  Similarity=0.127  Sum_probs=69.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      .++||.|+||+|++|++++..|...+.  +|+.+|+....  +....+.+......+..      ...++.++|+||++|
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~Dl~~~d~vi~~a   77 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE--EVTVLDDLRVPPMIPPEGTGKFLEKPVLEL------EERDLSDVRLVYHLA   77 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--CEEEECCCSSCCSSCCTTSSEEECSCGGGC------CHHHHTTEEEEEECC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccccchhhhhhhccCCCeeE------EeCccccCCEEEECC
Confidence            467999999999999999999999887  89999885431  11011111110011111      123455999999999


Q ss_pred             CCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          105 GVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       105 g~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +....+  .....+.+. |+.....+++.+.+.+..- +|.+|
T Consensus        78 ~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~-~v~~S  118 (321)
T 3vps_A           78 SHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPK-VVVGS  118 (321)
T ss_dssp             CCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCE-EEEEE
T ss_pred             ccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCe-EEEec
Confidence            864310  112233455 9999999999999887443 44443

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.80  E-value=2.4e-05  Score=70.30  Aligned_cols=66  Identities=12%  Similarity=0.166  Sum_probs=49.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |+||+|||+ |.+|..++..|...++  +|.++|+++.+..  .+.+.    .+..   ++++++++++||+||++..
T Consensus         1 M~~I~iiG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~----g~~~---~~~~~~~~~~advvi~~v~   66 (287)
T 3pdu_A            1 MTTYGFLGL-GIMGGPMAANLVRAGF--DVTVWNRNPAKCA--PLVAL----GARQ---ASSPAEVCAACDITIAMLA   66 (287)
T ss_dssp             CCCEEEECC-STTHHHHHHHHHHHTC--CEEEECSSGGGGH--HHHHH----TCEE---CSCHHHHHHHCSEEEECCS
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHC----CCee---cCCHHHHHHcCCEEEEEcC
Confidence            579999995 9999999999998887  8999999764333  22221    1222   3466788899999999864

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.80  E-value=1.6e-05  Score=73.33  Aligned_cols=95  Identities=20%  Similarity=0.284  Sum_probs=63.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC---------CCcEEEEecCCccccccCCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT---------RSEVAGYMGNDQLGQALEDSD   98 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~---------~~~v~~~~~t~d~~~a~~~aD   98 (300)
                      +|||+|||+ |.+|..++..|...+.  +|.++|+++   ....+.....         +..++.   +++.+ +++++|
T Consensus         3 ~mkI~IiGa-G~~G~~~a~~L~~~g~--~V~~~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~-~~~~~D   72 (335)
T 3ghy_A            3 LTRICIVGA-GAVGGYLGARLALAGE--AINVLARGA---TLQALQTAGLRLTEDGATHTLPVRA---THDAA-ALGEQD   72 (335)
T ss_dssp             CCCEEEESC-CHHHHHHHHHHHHTTC--CEEEECCHH---HHHHHHHTCEEEEETTEEEEECCEE---ESCHH-HHCCCS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEEChH---HHHHHHHCCCEEecCCCeEEEeeeE---ECCHH-HcCCCC
Confidence            589999996 9999999999999887  899999742   1112221110         011121   34554 479999


Q ss_pred             EEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCC
Q 022263           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPV  148 (300)
Q Consensus        99 iVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~  148 (300)
                      +||++.-.                ..+.++++.+..+ .|+.+++.++|..
T Consensus        73 ~Vilavk~----------------~~~~~~~~~l~~~l~~~~~iv~~~nGi  107 (335)
T 3ghy_A           73 VVIVAVKA----------------PALESVAAGIAPLIGPGTCVVVAMNGV  107 (335)
T ss_dssp             EEEECCCH----------------HHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred             EEEEeCCc----------------hhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            99998521                2345666666665 4688898899995

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=97.80  E-value=5.4e-05  Score=69.44  Aligned_cols=113  Identities=17%  Similarity=0.151  Sum_probs=72.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEecC-C---ccccccCC--CCE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN-D---QLGQALED--SDV   99 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t-~---d~~~a~~~--aDi   99 (300)
                      .|+|.|+||+|++|++++..|...|.  +|+++|++...  .....+..   ...+..+.+. .   ++.+++++  .|+
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   83 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARV---ADGMQSEIGDIRDQNKLLESIREFQPEI   83 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTT---TTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--eEEEEeCCCcccchhhHhhcc---CCceEEEEccccCHHHHHHHHHhcCCCE
Confidence            47999999999999999999999887  89999986432  11111111   1122222211 1   23345555  899


Q ss_pred             EEEcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          100 VIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       100 VIi~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ||++|+.+...  .....+.+..|+.....+++.+.+......+|.+|
T Consensus        84 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S  131 (357)
T 1rkx_A           84 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT  131 (357)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             EEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEec
Confidence            99999864211  11234566778888889999888875334555554

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.79  E-value=6.5e-05  Score=68.36  Aligned_cols=67  Identities=18%  Similarity=0.204  Sum_probs=49.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      .+|||+|||. |.+|..++..|...++  +|.++|+++.+..  .+....    +..   .+++.+++++||+||++..
T Consensus         8 ~~~~IgiIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~e~~~~aDvVi~~vp   74 (306)
T 3l6d_A            8 FEFDVSVIGL-GAMGTIMAQVLLKQGK--RVAIWNRSPGKAA--ALVAAG----AHL---CESVKAALSASPATIFVLL   74 (306)
T ss_dssp             CSCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHH--HHHHHT----CEE---CSSHHHHHHHSSEEEECCS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHCC----Cee---cCCHHHHHhcCCEEEEEeC
Confidence            4679999995 9999999999999987  8999998653222  222211    221   2466788899999999853

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.79  E-value=2.9e-05  Score=67.45  Aligned_cols=100  Identities=16%  Similarity=0.127  Sum_probs=62.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCC-CCCEEEEEecCCcccHHHHhccccCCCcEEEEec----CCccccccCCCCEE
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVV  100 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aDiV  100 (300)
                      ..|++|.|+||+|++|+.++..|+..+ .  +|+++++++.+..  ++..    ..+..+.+    ..+++++++++|+|
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~--~V~~~~R~~~~~~--~~~~----~~~~~~~~Dl~d~~~~~~~~~~~D~v   92 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTI--KQTLFARQPAKIH--KPYP----TNSQIIMGDVLNHAALKQAMQGQDIV   92 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTE--EEEEEESSGGGSC--SSCC----TTEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCc--eEEEEEcChhhhc--cccc----CCcEEEEecCCCHHHHHHHhcCCCEE
Confidence            346689999999999999999999888 5  8999998643211  1111    12222211    12355678999999


Q ss_pred             EEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       101 Ii~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      |.++|..      ..+      ...+.+++.+++.... .+|++|.
T Consensus        93 v~~a~~~------~~~------~~~~~~~~~~~~~~~~-~iV~iSS  125 (236)
T 3qvo_A           93 YANLTGE------DLD------IQANSVIAAMKACDVK-RLIFVLS  125 (236)
T ss_dssp             EEECCST------THH------HHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             EEcCCCC------chh------HHHHHHHHHHHHcCCC-EEEEEec
Confidence            9998742      111      2245677777766533 4555543

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=97.79  E-value=6.2e-05  Score=69.38  Aligned_cols=113  Identities=17%  Similarity=0.235  Sum_probs=74.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhC-CCCCEEEEEecCCcccH--HHHhccccCCCcEEEEecC----CccccccCCCCE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGN----DQLGQALEDSDV   99 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~-~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aDi   99 (300)
                      +.++|.|+||+|++|++++..|+.. |. .+|+++++++.+..  ..++.+    ..+..+.+.    .++.++++++|+
T Consensus        20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~l~~~~~~~D~   94 (344)
T 2gn4_A           20 DNQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDELKQSEMAMEFND----PRMRFFIGDVRDLERLNYALEGVDI   94 (344)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCHHHHHHHHHHHCC----TTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECChhhHHHHHHHhcC----CCEEEEECCCCCHHHHHHHHhcCCE
Confidence            3469999999999999999999887 63 38999998643221  112221    133333221    124567899999


Q ss_pred             EEEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          100 VIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       100 VIi~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ||++|+....+.  ....+.+..|+.....+++.+.+.... .+|.+|
T Consensus        95 Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~-~~V~~S  141 (344)
T 2gn4_A           95 CIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAIS-QVIALS  141 (344)
T ss_dssp             EEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             EEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Confidence            999998653211  123456778999999999998887544 344443

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.78  E-value=7.2e-05  Score=68.17  Aligned_cols=114  Identities=11%  Similarity=0.141  Sum_probs=69.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhcccc-----CCCcEEE--EecCCccccccCCCCEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN-----TRSEVAG--YMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~-----~~~~v~~--~~~t~d~~~a~~~aDiVI  101 (300)
                      |||+|||+ |.+|..++..|...+.  +|.++|+++.  .  .+....     .......  ...+++. ++++++|+||
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~--~--~i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~vi   74 (312)
T 3hn2_A            3 LRIAIVGA-GALGLYYGALLQRSGE--DVHFLLRRDY--E--AIAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDLVL   74 (312)
T ss_dssp             -CEEEECC-STTHHHHHHHHHHTSC--CEEEECSTTH--H--HHHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEEcCcH--H--HHHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCEEE
Confidence            79999996 9999999999999887  8999998652  1  122110     0001110  0112344 4578999999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      ++.-.    ..            +.++++.++.+ .|+.+++.+.|-.+..    ..+.+.   +|.+++++-
T Consensus        75 lavk~----~~------------~~~~l~~l~~~l~~~~~iv~l~nGi~~~----~~l~~~---~~~~~v~~~  124 (312)
T 3hn2_A           75 VGLKT----FA------------NSRYEELIRPLVEEGTQILTLQNGLGNE----EALATL---FGAERIIGG  124 (312)
T ss_dssp             ECCCG----GG------------GGGHHHHHGGGCCTTCEEEECCSSSSHH----HHHHHH---TCGGGEEEE
T ss_pred             EecCC----CC------------cHHHHHHHHhhcCCCCEEEEecCCCCcH----HHHHHH---CCCCcEEEE
Confidence            98522    11            22345555555 4688888899998732    222232   667777754

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=97.78  E-value=4e-05  Score=69.86  Aligned_cols=111  Identities=20%  Similarity=0.201  Sum_probs=70.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCC-------CCCEEEEEecCCcccHHHHhccccCCCcEEEEec----CCcccccc-
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNP-------LVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQAL-   94 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~-------~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~a~-   94 (300)
                      ++|+|.|+||+|++|++++..|+..|       .  +|+++|........  .    ....+..+.+    ..++++++ 
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~--~V~~~~r~~~~~~~--~----~~~~~~~~~~Dl~d~~~~~~~~~   84 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVE--KFTLIDVFQPEAPA--G----FSGAVDARAADLSAPGEAEKLVE   84 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEE--EEEEEESSCCCCCT--T----CCSEEEEEECCTTSTTHHHHHHH
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCc--eEEEEEccCCcccc--c----cCCceeEEEcCCCCHHHHHHHHh
Confidence            46799999999999999999998877       4  89999986432110  0    0112322211    12234456 


Q ss_pred             CCCCEEEEcCCCCCCC-CCcchhhhhhhHHHHHHHHHHHHhhC----CCeEEEEec
Q 022263           95 EDSDVVIIPAGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKYC----PNAIVNMIS  145 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~-g~~r~dl~~~N~~i~~~i~~~i~~~~----p~a~viv~t  145 (300)
                      .++|+||++|+..... ..+..+.+..|+.-...+++.+.+..    +...+|.+|
T Consensus        85 ~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~S  140 (342)
T 2hrz_A           85 ARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTS  140 (342)
T ss_dssp             TCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             cCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeC
Confidence            5899999999864210 11233456778888888888887765    234455553

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.76  E-value=6.1e-05  Score=68.73  Aligned_cols=96  Identities=22%  Similarity=0.256  Sum_probs=62.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec--CCcccHHHHhccccC----C---CcEEEEecCC--ccccccCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINT----R---SEVAGYMGND--QLGQALEDS   97 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~--~~~~g~~~dl~~~~~----~---~~v~~~~~t~--d~~~a~~~a   97 (300)
                      |||+|||+ |.+|+.++..|...++  +|.++|+  ++....  .+.....    .   ..+..   ++  ++.++++++
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~--~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~   72 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEILK--SISAGREHPRLGVKLNGVEI---FWPEQLEKCLENA   72 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHHHH--HHHTTCCBTTTTBCCCSEEE---ECGGGHHHHHTTC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEEccCCHHHHH--HHHHhCcCcccCccccceEE---ecHHhHHHHHhcC
Confidence            69999996 9999999999998887  8999998  543222  2222110    0   11232   23  555678999


Q ss_pred             CEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 022263           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (300)
Q Consensus        98 DiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (300)
                      |+||++...+                .+.++++.+....|+.+++.++|..
T Consensus        73 D~vi~~v~~~----------------~~~~v~~~i~~l~~~~~vv~~~ng~  107 (335)
T 1txg_A           73 EVVLLGVSTD----------------GVLPVMSRILPYLKDQYIVLISKGL  107 (335)
T ss_dssp             SEEEECSCGG----------------GHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             CEEEEcCChH----------------HHHHHHHHHhcCCCCCEEEEEcCcC
Confidence            9999986321                1234444454434577888888876

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=97.76  E-value=2.5e-05  Score=69.27  Aligned_cols=100  Identities=12%  Similarity=0.097  Sum_probs=66.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhC--CCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC----CccccccCCCCEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVII  102 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~--~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aDiVIi  102 (300)
                      |||.|+||+|++|++++..|...  +.  +|+.++++.....  ++.+.    .+..+.+.    .++.++++++|+||+
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~l~~~----~~~~~~~D~~d~~~l~~~~~~~d~vi~   72 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS--QIIAIVRNVEKAS--TLADQ----GVEVRHGDYNQPESLQKAFAGVSKLLF   72 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTTH--HHHHT----TCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC--eEEEEEcCHHHHh--HHhhc----CCeEEEeccCCHHHHHHHHhcCCEEEE
Confidence            57999999999999999999887  65  8999998654322  22211    11211111    235567899999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +|+..  ++    +  ..|....+.+++.+.+.... .+|.+|
T Consensus        73 ~a~~~--~~----~--~~n~~~~~~l~~a~~~~~~~-~~v~~S  106 (287)
T 2jl1_A           73 ISGPH--YD----N--TLLIVQHANVVKAARDAGVK-HIAYTG  106 (287)
T ss_dssp             CCCCC--SC----H--HHHHHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             cCCCC--cC----c--hHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            98853  11    1  34788888888888876544 344443

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.76  E-value=0.00016  Score=64.27  Aligned_cols=91  Identities=15%  Similarity=0.158  Sum_probs=60.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~  108 (300)
                      |||+|||+ |.+|..++..|...++  +|+++|.++....  .+......  ...   +++++++ +++|+||++...  
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~g~~--~~~---~~~~~~~-~~~D~vi~av~~--   67 (279)
T 2f1k_A            1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCE--KAVERQLV--DEA---GQDLSLL-QTAKIIFLCTPI--   67 (279)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHHTTSC--SEE---ESCGGGG-TTCSEEEECSCH--
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHhCCCC--ccc---cCCHHHh-CCCCEEEEECCH--
Confidence            68999995 9999999999998887  8999998653222  22221111  111   2356666 999999998531  


Q ss_pred             CCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263          109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (300)
Q Consensus       109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (300)
                                    ..+.++++.+..+. |+.+++.++|
T Consensus        68 --------------~~~~~~~~~l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           68 --------------QLILPTLEKLIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             --------------HHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence                          13455666676654 5777766644

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=97.75  E-value=9.8e-05  Score=67.92  Aligned_cols=116  Identities=13%  Similarity=0.030  Sum_probs=68.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc---HHHHhcccc--CCCcEEEEecC-C---ccccccCC--
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHIN--TRSEVAGYMGN-D---QLGQALED--   96 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g---~~~dl~~~~--~~~~v~~~~~t-~---d~~~a~~~--   96 (300)
                      ||+|.|+||+|++|++++..|+..|.  +|+++|++....   ...++....  ....+..+.+. +   ++.+++++  
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   78 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQ   78 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcC
Confidence            57899999999999999999998886  899998854221   111111100  01123322111 1   23344554  


Q ss_pred             CCEEEEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCC--eEEEEec
Q 022263           97 SDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPN--AIVNMIS  145 (300)
Q Consensus        97 aDiVIi~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~--a~viv~t  145 (300)
                      .|+||++||......  .+....+..|+.....+++.+.+...+  ..+|.+|
T Consensus        79 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~S  131 (372)
T 1db3_A           79 PDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS  131 (372)
T ss_dssp             CSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence            699999998643211  223345667888888899988877542  5566554

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=97.75  E-value=2.8e-05  Score=71.29  Aligned_cols=97  Identities=18%  Similarity=0.236  Sum_probs=69.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCC-----CCCEEEEEecCCcccHHHHhccccCCCcEEEEecC----CccccccCC---
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNP-----LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALED---   96 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~-----~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~---   96 (300)
                      |||.|+||+|++|++++..|...+     .  +|+.+|+......   +.+    ..+..+.+.    .++.+++++   
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~--~V~~~~r~~~~~~---~~~----~~~~~~~~Dl~d~~~~~~~~~~~~~   72 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPW--KVYGVARRTRPAW---HED----NPINYVQCDISDPDDSQAKLSPLTD   72 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSE--EEEEEESSCCCSC---CCS----SCCEEEECCTTSHHHHHHHHTTCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCce--EEEEEeCCCCccc---ccc----CceEEEEeecCCHHHHHHHHhcCCC
Confidence            689999999999999999998877     5  8999998653221   111    122222111    124456777   


Q ss_pred             CCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC
Q 022263           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP  137 (300)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p  137 (300)
                      +|+||++|+...   .+..+.+..|+.....+++.+.+.++
T Consensus        73 ~d~vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~~  110 (364)
T 2v6g_A           73 VTHVFYVTWANR---STEQENCEANSKMFRNVLDAVIPNCP  110 (364)
T ss_dssp             CCEEEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred             CCEEEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            999999998652   34456778899999999999988743

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.75  E-value=0.00011  Score=67.22  Aligned_cols=94  Identities=15%  Similarity=0.226  Sum_probs=60.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcccc-ccCCCCEEEEcCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQ-ALEDSDVVIIPAGV  106 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~-a~~~aDiVIi~ag~  106 (300)
                      .|||+|||+ |.+|..++..|...|+..+|+++|+++....  .+.....  ....   ++++++ ++++||+||++...
T Consensus        33 ~~kI~IIG~-G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~--~a~~~G~--~~~~---~~~~~~~~~~~aDvVilavp~  104 (314)
T 3ggo_A           33 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESIS--KAVDLGI--IDEG---TTSIAKVEDFSPDFVMLSSPV  104 (314)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHH--HHHHTTS--CSEE---ESCTTGGGGGCCSEEEECSCG
T ss_pred             CCEEEEEee-CHHHHHHHHHHHhCCCCCEEEEEECCHHHHH--HHHHCCC--cchh---cCCHHHHhhccCCEEEEeCCH
Confidence            479999995 9999999999999887668999998653211  1111111  0011   245667 79999999998531


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEec
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMIS  145 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~t  145 (300)
                      .            .    +.++.+.+..+ .|+++++.++
T Consensus       105 ~------------~----~~~vl~~l~~~l~~~~iv~d~~  128 (314)
T 3ggo_A          105 R------------T----FREIAKKLSYILSEDATVTDQG  128 (314)
T ss_dssp             G------------G----HHHHHHHHHHHSCTTCEEEECC
T ss_pred             H------------H----HHHHHHHHhhccCCCcEEEECC
Confidence            1            1    23344555554 4677776554

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.74  E-value=0.00011  Score=65.80  Aligned_cols=92  Identities=21%  Similarity=0.327  Sum_probs=61.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      +|||+|||++|.+|..++..|...++  +|+++|+++....  .+.+..    +..   + +..++++++|+||++... 
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~--~V~~~~r~~~~~~--~~~~~g----~~~---~-~~~~~~~~aDvVi~av~~-   77 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAH--HLAAIEIAPEGRD--RLQGMG----IPL---T-DGDGWIDEADVVVLALPD-   77 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSS--EEEEECCSHHHHH--HHHHTT----CCC---C-CSSGGGGTCSEEEECSCH-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHhcC----CCc---C-CHHHHhcCCCEEEEcCCc-
Confidence            47999999449999999999999887  8999998643222  222211    111   1 345778999999998531 


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 022263          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (300)
                                     ..+.++.+.+.... |+.+++..|+.
T Consensus        78 ---------------~~~~~v~~~l~~~l~~~~ivv~~s~~  103 (286)
T 3c24_A           78 ---------------NIIEKVAEDIVPRVRPGTIVLILDAA  103 (286)
T ss_dssp             ---------------HHHHHHHHHHGGGSCTTCEEEESCSH
T ss_pred             ---------------hHHHHHHHHHHHhCCCCCEEEECCCC
Confidence                           11456666776654 57777665553

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=97.73  E-value=2.5e-05  Score=69.52  Aligned_cols=102  Identities=14%  Similarity=0.150  Sum_probs=65.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec----CCccccccCC-CCEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALED-SDVVI  101 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~a~~~-aDiVI  101 (300)
                      ++|||.|+|+ |++|++++..|...|.  +|+.++++...     +..     .++.+.+    ..++.+++++ +|+||
T Consensus         2 ~~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~-----~~~-----~~~~~~~Dl~d~~~~~~~~~~~~d~vi   68 (286)
T 3gpi_A            2 SLSKILIAGC-GDLGLELARRLTAQGH--EVTGLRRSAQP-----MPA-----GVQTLIADVTRPDTLASIVHLRPEILV   68 (286)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECTTSC-----CCT-----TCCEEECCTTCGGGCTTGGGGCCSEEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCccc-----ccc-----CCceEEccCCChHHHHHhhcCCCCEEE
Confidence            3579999995 9999999999999887  89999986432     100     1111110    1234456666 99999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ++|+...   .+..+....|+.....+++.+.+.... .+|.+|
T Consensus        69 h~a~~~~---~~~~~~~~~n~~~~~~ll~a~~~~~~~-~~v~~S  108 (286)
T 3gpi_A           69 YCVAASE---YSDEHYRLSYVEGLRNTLSALEGAPLQ-HVFFVS  108 (286)
T ss_dssp             ECHHHHH---HC-----CCSHHHHHHHHHHTTTSCCC-EEEEEE
T ss_pred             EeCCCCC---CCHHHHHHHHHHHHHHHHHHHhhCCCC-EEEEEc
Confidence            9987532   122345677899999999988865433 444443

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.72  E-value=0.00065  Score=53.26  Aligned_cols=70  Identities=21%  Similarity=0.279  Sum_probs=44.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc---cc-cccCCCCEEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LG-QALEDSDVVII  102 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~-~a~~~aDiVIi  102 (300)
                      .|||+|+|+ |.+|..++..|...+.  +++++|.++....  .+....   .+..+.+. ++   +. ..++++|+||+
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~--~v~~~d~~~~~~~--~~~~~~---~~~~~~~d~~~~~~l~~~~~~~~d~vi~   75 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDICK--KASAEI---DALVINGDCTKIKTLEDAGIEDADMYIA   75 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHHHC---SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHH--HHHHhc---CcEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence            479999996 9999999999998886  8999998643221  222110   11111111 11   11 23789999999


Q ss_pred             cCC
Q 022263          103 PAG  105 (300)
Q Consensus       103 ~ag  105 (300)
                      +.+
T Consensus        76 ~~~   78 (140)
T 1lss_A           76 VTG   78 (140)
T ss_dssp             CCS
T ss_pred             eeC
Confidence            864

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=97.72  E-value=3e-05  Score=69.45  Aligned_cols=105  Identities=13%  Similarity=0.065  Sum_probs=68.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCC-CCCEEEEEecCCcccHHHHhccccCCCcEEEEecC----CccccccCCCCEEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVII  102 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aDiVIi  102 (300)
                      +++|.|+||+|++|++++..|...+ .  +|+.++++.......++...    .+..+.+.    .++.++++++|+||+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~R~~~~~~~~~l~~~----~~~~~~~D~~d~~~l~~~~~~~d~vi~   78 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF--KVRVVTRNPRKKAAKELRLQ----GAEVVQGDQDDQVIMELALNGAYATFI   78 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS--EEEEEESCTTSHHHHHHHHT----TCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc--eEEEEEcCCCCHHHHHHHHC----CCEEEEecCCCHHHHHHHHhcCCEEEE
Confidence            3689999999999999999888866 5  89999986543322233221    12221111    235567899999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +++.....      ....|....+.+++.+++.+.. .+|..|
T Consensus        79 ~a~~~~~~------~~~~~~~~~~~~~~aa~~~gv~-~iv~~S  114 (299)
T 2wm3_A           79 VTNYWESC------SQEQEVKQGKLLADLARRLGLH-YVVYSG  114 (299)
T ss_dssp             CCCHHHHT------CHHHHHHHHHHHHHHHHHHTCS-EEEECC
T ss_pred             eCCCCccc------cchHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            98742111      1245677788888888876543 344333

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=97.72  E-value=4.7e-05  Score=70.75  Aligned_cols=96  Identities=13%  Similarity=0.266  Sum_probs=61.3

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhcccc----------CCCcEEEEecCCccccccCCCCE
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN----------TRSEVAGYMGNDQLGQALEDSDV   99 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~----------~~~~v~~~~~t~d~~~a~~~aDi   99 (300)
                      ||+|||+ |.+|..++..|...++  +|.++|+++....  .+.+..          .+..+..   ++++.++++++|+
T Consensus        17 kI~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~aDv   88 (366)
T 1evy_A           17 KAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEVR--LVNEKRENVLFLKGVQLASNITF---TSDVEKAYNGAEI   88 (366)
T ss_dssp             EEEEECC-SHHHHHHHHHHTTTEE--EEEEECSCHHHHH--HHHHHTBCTTTSTTCBCCTTEEE---ESCHHHHHTTCSS
T ss_pred             eEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHHcCcccccccccccccceee---eCCHHHHHcCCCE
Confidence            9999996 9999999999998886  8999998643222  121110          1112333   2466677899999


Q ss_pred             EEEcCCCCCCCCCcchhhhhhhHHHHHHHHHH----HHhh-CC-CeEEEEecCCCc
Q 022263          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSA----IAKY-CP-NAIVNMISNPVN  149 (300)
Q Consensus       100 VIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~----i~~~-~p-~a~viv~tNP~d  149 (300)
                      ||++...                ..+.++++.    +..+ .| +.+++.++|..+
T Consensus        89 Vilav~~----------------~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~  128 (366)
T 1evy_A           89 ILFVIPT----------------QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE  128 (366)
T ss_dssp             EEECCCH----------------HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred             EEECCCh----------------HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCC
Confidence            9998521                123334444    4333 25 677777887654

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.72  E-value=0.00011  Score=66.84  Aligned_cols=118  Identities=9%  Similarity=0.110  Sum_probs=70.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhcccc----CCCcEEEEecCCccccccCCCCEEEEc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~----~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      +|||+|||+ |.+|..++..|. .+.  +|.++++++....  .+....    .+........+.+ .++..++|+||++
T Consensus         2 ~mkI~IiGa-Ga~G~~~a~~L~-~g~--~V~~~~r~~~~~~--~l~~~G~~~~~~~~~~~~~~~~~-~~~~~~~D~vila   74 (307)
T 3ego_A            2 SLKIGIIGG-GSVGLLCAYYLS-LYH--DVTVVTRRQEQAA--AIQSEGIRLYKGGEEFRADCSAD-TSINSDFDLLVVT   74 (307)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHH--HHHHHCEEEEETTEEEEECCEEE-SSCCSCCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHh-cCC--ceEEEECCHHHHH--HHHhCCceEecCCCeeccccccc-ccccCCCCEEEEE
Confidence            479999996 999999999999 776  9999998542211  121110    0000000000001 2457899999998


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-eeh
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTL  176 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t~L  176 (300)
                      .-.    .            -+.++++.++...++. +|.+.|-++.     .+.++.  .+|.+++++- +..
T Consensus        75 vK~----~------------~~~~~l~~l~~~~~~~-ivs~~nGi~~-----~e~l~~--~~~~~~vl~g~~~~  124 (307)
T 3ego_A           75 VKQ----H------------QLQSVFSSLERIGKTN-ILFLQNGMGH-----IHDLKD--WHVGHSIYVGIVEH  124 (307)
T ss_dssp             CCG----G------------GHHHHHHHTTSSCCCE-EEECCSSSHH-----HHHHHT--CCCSCEEEEEEECC
T ss_pred             eCH----H------------HHHHHHHHhhcCCCCe-EEEecCCccH-----HHHHHH--hCCCCcEEEEEEee
Confidence            521    1            1344556666555677 7888998872     223333  2678888754 443

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.71  E-value=0.00011  Score=65.64  Aligned_cols=92  Identities=13%  Similarity=0.087  Sum_probs=58.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      ||||+|||+ |.+|..++..|.. ++  +|.++|+++.+..  .+.+..    +...   + ++++++++|+||++...+
T Consensus         1 M~~i~iiG~-G~~G~~~a~~l~~-g~--~V~~~~~~~~~~~--~~~~~g----~~~~---~-~~~~~~~~D~vi~~v~~~   66 (289)
T 2cvz_A            1 MEKVAFIGL-GAMGYPMAGHLAR-RF--PTLVWNRTFEKAL--RHQEEF----GSEA---V-PLERVAEARVIFTCLPTT   66 (289)
T ss_dssp             -CCEEEECC-STTHHHHHHHHHT-TS--CEEEECSSTHHHH--HHHHHH----CCEE---C-CGGGGGGCSEEEECCSSH
T ss_pred             CCeEEEEcc-cHHHHHHHHHHhC-CC--eEEEEeCCHHHHH--HHHHCC----Cccc---C-HHHHHhCCCEEEEeCCCh
Confidence            579999995 9999999999998 87  7999998754322  122211    1111   2 456788999999986422


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCC
Q 022263          108 RKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPV  148 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~  148 (300)
                                     ..++++.+.+.+. .++.+++..+|..
T Consensus        67 ---------------~~~~~v~~~l~~~l~~~~~vv~~s~~~   93 (289)
T 2cvz_A           67 ---------------REVYEVAEALYPYLREGTYWVDATSGE   93 (289)
T ss_dssp             ---------------HHHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred             ---------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                           1123344455444 3567777667644

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.71  E-value=4.3e-05  Score=72.17  Aligned_cols=102  Identities=16%  Similarity=0.246  Sum_probs=66.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCC-----C-CEEEEEecCCc---ccHHHHhc--ccc--------CCCcEEEEec
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPL-----V-SRLALYDIANT---PGVAADVG--HIN--------TRSEVAGYMG   86 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~-----~-~el~L~D~~~~---~g~~~dl~--~~~--------~~~~v~~~~~   86 (300)
                      .+|.||+|||| |.-|.++|..|+..+.     + .+|.||..++.   +..+..++  |.+        .+..++.   
T Consensus        32 ~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~---  107 (391)
T 4fgw_A           32 EKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVA---  107 (391)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEE---
T ss_pred             CCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEE---
Confidence            35679999996 9999999999987542     1 36999977542   22222232  222        2345554   


Q ss_pred             CCccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 022263           87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (300)
Q Consensus        87 t~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (300)
                      |+|+++++++||+||++.-                .+.+++++++++.+- ++..+|.++-=
T Consensus       108 t~dl~~al~~ad~ii~avP----------------s~~~r~~l~~l~~~~~~~~~iv~~~KG  153 (391)
T 4fgw_A          108 NPDLIDSVKDVDIIVFNIP----------------HQFLPRICSQLKGHVDSHVRAISCLKG  153 (391)
T ss_dssp             ESCHHHHHTTCSEEEECSC----------------GGGHHHHHHHHTTTSCTTCEEEECCCS
T ss_pred             eCCHHHHHhcCCEEEEECC----------------hhhhHHHHHHhccccCCCceeEEeccc
Confidence            5689999999999999852                133566666666654 35666665543

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=97.71  E-value=6.3e-05  Score=68.61  Aligned_cols=113  Identities=19%  Similarity=0.059  Sum_probs=70.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--------cHHHHhccccCCCcEEEEecC-C---ccccccC-
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--------GVAADVGHINTRSEVAGYMGN-D---QLGQALE-   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--------g~~~dl~~~~~~~~v~~~~~t-~---d~~~a~~-   95 (300)
                      |+|.|+||+|++|++++..|+..|.  +|+++|.....        ....++.... ...+..+.+. +   +++++++ 
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~   79 (348)
T 1ek6_A            3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKK   79 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCcccccccccHHHHHHHHhcc-CCceEEEECCCCCHHHHHHHHHh
Confidence            6899999999999999999999886  89999874311        1122222110 0122222111 1   2334555 


Q ss_pred             -CCCEEEEcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263           96 -DSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        96 -~aDiVIi~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                       ++|+||++|+.....  .....+.+..|+.....+++.+.+.... .+|.+|
T Consensus        80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  131 (348)
T 1ek6_A           80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSS  131 (348)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence             899999999864211  0123456778999999999988876544 444443

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=97.70  E-value=4e-05  Score=68.34  Aligned_cols=103  Identities=14%  Similarity=0.080  Sum_probs=64.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCC--CCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED--SDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~--aDiVIi~a  104 (300)
                      ++|||.|+||+|++|++++..|...+..........   .....|+.+.            .++.+++++  +|+||++|
T Consensus         5 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~~---~~~~~D~~d~------------~~~~~~~~~~~~d~Vih~A   69 (319)
T 4b8w_A            5 QSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFV---SSKDADLTDT------------AQTRALFEKVQPTHVIHLA   69 (319)
T ss_dssp             CCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEEC---CTTTCCTTSH------------HHHHHHHHHSCCSEEEECC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhcCCccccccccc---CceecccCCH------------HHHHHHHhhcCCCEEEECc
Confidence            578999999999999999999998875100000000   0011122221            123355655  99999999


Q ss_pred             CCCCC---CCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          105 GVPRK---PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       105 g~~~~---~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +....   ......+.+..|+.....+++.+.+.+.. .+|.+|
T Consensus        70 ~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~v~~S  112 (319)
T 4b8w_A           70 AMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR-KVVSCL  112 (319)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             eecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEc
Confidence            87421   11234456788999999999999887654 344443

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=97.69  E-value=8.1e-05  Score=69.21  Aligned_cols=115  Identities=15%  Similarity=0.059  Sum_probs=71.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHH-hCCCCCEEEEEecCCcc---------cHHH-H-hccccC---CCc---EEEEecC-C
Q 022263           28 DRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTP---------GVAA-D-VGHINT---RSE---VAGYMGN-D   88 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~-~~~~~~el~L~D~~~~~---------g~~~-d-l~~~~~---~~~---v~~~~~t-~   88 (300)
                      .|+|.|+||+|++|++++..|+ ..+.  +|+++|.....         ...+ + +.+...   ...   +..+.+. .
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~   79 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR   79 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCC--EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCC
Confidence            3799999999999999999999 8886  89999975322         1111 1 111100   001   3333221 1


Q ss_pred             c---cccccC--C-CCEEEEcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263           89 Q---LGQALE--D-SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        89 d---~~~a~~--~-aDiVIi~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      |   +.++++  + +|+||++|+.....  .....+.+..|+.....+++.+.+....- +|.+|
T Consensus        80 d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~-iv~~S  143 (397)
T 1gy8_A           80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDK-IIFSS  143 (397)
T ss_dssp             CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCE-EEEEE
T ss_pred             CHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCE-EEEEC
Confidence            2   334455  5 99999999864211  11234567789999999999988765443 44443

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.68  E-value=7.2e-05  Score=67.04  Aligned_cols=66  Identities=17%  Similarity=0.226  Sum_probs=47.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      .||||+|||+ |.+|..++..|...++  +|.++| ++.+...  +.+..    +..   .++++++++++|+||++..
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~-~~~~~~~--~~~~g----~~~---~~~~~~~~~~~D~vi~~vp   67 (295)
T 1yb4_A            2 NAMKLGFIGL-GIMGSPMAINLARAGH--QLHVTT-IGPVADE--LLSLG----AVN---VETARQVTEFADIIFIMVP   67 (295)
T ss_dssp             --CEEEECCC-STTHHHHHHHHHHTTC--EEEECC-SSCCCHH--HHTTT----CBC---CSSHHHHHHTCSEEEECCS
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEEc-CHHHHHH--HHHcC----Ccc---cCCHHHHHhcCCEEEEECC
Confidence            4589999995 9999999999998887  899999 7644332  22211    111   2456677899999999864

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.67  E-value=3e-05  Score=66.95  Aligned_cols=93  Identities=17%  Similarity=0.180  Sum_probs=60.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      .+|||+|||+ |.+|..++..|...++  ++.++|+++.+.  .++.+.    .++..    +++++++++|+||++...
T Consensus        27 ~~~~I~iiG~-G~~G~~la~~l~~~g~--~V~~~~r~~~~~--~~~~~~----g~~~~----~~~~~~~~~DvVi~av~~   93 (215)
T 2vns_A           27 EAPKVGILGS-GDFARSLATRLVGSGF--KVVVGSRNPKRT--ARLFPS----AAQVT----FQEEAVSSPEVIFVAVFR   93 (215)
T ss_dssp             --CCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSHHHH--HHHSBT----TSEEE----EHHHHTTSCSEEEECSCG
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHc----CCcee----cHHHHHhCCCEEEECCCh
Confidence            5689999995 9999999999998887  899999864322  223322    12221    455788999999998642


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      .    . ..+++        ++    ....++.+++.++|+..
T Consensus        94 ~----~-~~~v~--------~l----~~~~~~~~vv~~s~g~~  119 (215)
T 2vns_A           94 E----H-YSSLC--------SL----SDQLAGKILVDVSNPTE  119 (215)
T ss_dssp             G----G-SGGGG--------GG----HHHHTTCEEEECCCCCH
T ss_pred             H----H-HHHHH--------HH----HHhcCCCEEEEeCCCcc
Confidence            1    1 11111        11    22226788999999876

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.67  E-value=4.8e-05  Score=70.38  Aligned_cols=115  Identities=9%  Similarity=-0.036  Sum_probs=70.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc---HHHHhcccc---CCCcEEEEecC-Cc---cccccCC--
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHIN---TRSEVAGYMGN-DQ---LGQALED--   96 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g---~~~dl~~~~---~~~~v~~~~~t-~d---~~~a~~~--   96 (300)
                      ++|.|+||+|++|++++..|+..+.  +|+++|++....   ...++....   ....+..+.+. .|   +.+++++  
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  102 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK  102 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcC
Confidence            5899999999999999999999886  899999854211   111111100   01123332221 12   3344554  


Q ss_pred             CCEEEEcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCC--CeEEEEec
Q 022263           97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCP--NAIVNMIS  145 (300)
Q Consensus        97 aDiVIi~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p--~a~viv~t  145 (300)
                      .|+||++||.....  ..+..+.+..|+.....+++.+.+...  ...+|.+|
T Consensus       103 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~S  155 (375)
T 1t2a_A          103 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS  155 (375)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             CCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEec
Confidence            69999999864211  012334567788888889988887653  14555554

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.67  E-value=0.00011  Score=67.01  Aligned_cols=70  Identities=16%  Similarity=0.223  Sum_probs=47.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      .+|||+|||+ |.+|..++..|...|+ .+|.++|+++.......+...    .+..   ++++++++++||+||++..
T Consensus        23 ~~~~I~iIG~-G~mG~~~A~~L~~~G~-~~V~~~dr~~~~~~~~~~~~~----g~~~---~~~~~e~~~~aDvVi~~vp   92 (312)
T 3qsg_A           23 NAMKLGFIGF-GEAASAIASGLRQAGA-IDMAAYDAASAESWRPRAEEL----GVSC---KASVAEVAGECDVIFSLVT   92 (312)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHHSC-CEEEEECSSCHHHHHHHHHHT----TCEE---CSCHHHHHHHCSEEEECSC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC-CeEEEEcCCCCHHHHHHHHHC----CCEE---eCCHHHHHhcCCEEEEecC
Confidence            4689999995 9999999999998875 489999986311111122221    1222   2466688899999999864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.67  E-value=8.7e-05  Score=66.70  Aligned_cols=65  Identities=22%  Similarity=0.207  Sum_probs=47.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |||+|||+ |.+|..++..|...++  +|.++|+++.+..  .+.+.    .+..   +.+++++++++|+||++..
T Consensus         6 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~----g~~~---~~~~~~~~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPEAIA--DVIAA----GAET---ASTAKAIAEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHHT----TCEE---CSSHHHHHHHCSEEEECCS
T ss_pred             ceEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHHC----CCee---cCCHHHHHhCCCEEEEECC
Confidence            69999995 9999999999998887  8999998653222  22221    1222   2466677899999999864

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.66  E-value=2.4e-05  Score=68.80  Aligned_cols=97  Identities=14%  Similarity=0.285  Sum_probs=61.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCC--CEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~--~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      +|||+|||+ |.+|..++..|...++.  .+|.++|+++.+..  ++.+..   .+..   +++.+++++++|+||++. 
T Consensus         2 ~~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~--~~~~~~---g~~~---~~~~~e~~~~aDvVilav-   71 (247)
T 3gt0_A            2 DKQIGFIGC-GNMGMAMIGGMINKNIVSSNQIICSDLNTANLK--NASEKY---GLTT---TTDNNEVAKNADILILSI-   71 (247)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHH--HHHHHH---CCEE---CSCHHHHHHHCSEEEECS-
T ss_pred             CCeEEEECc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHH--HHHHHh---CCEE---eCChHHHHHhCCEEEEEe-
Confidence            369999995 99999999999988863  47999998653222  222111   1222   245667889999999986 


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCc
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (300)
                      .   +.            .+.++.+.+..+. |+.+++..++.+.
T Consensus        72 ~---~~------------~~~~v~~~l~~~l~~~~~vvs~~~gi~  101 (247)
T 3gt0_A           72 K---PD------------LYASIINEIKEIIKNDAIIVTIAAGKS  101 (247)
T ss_dssp             C---TT------------THHHHC---CCSSCTTCEEEECSCCSC
T ss_pred             C---HH------------HHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence            1   21            1445556666554 5666665666655

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=97.66  E-value=0.00018  Score=67.87  Aligned_cols=114  Identities=17%  Similarity=0.168  Sum_probs=70.9

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-----HHHhccc-------cCCCcEEEEecC----Cc
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----AADVGHI-------NTRSEVAGYMGN----DQ   89 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-----~~dl~~~-------~~~~~v~~~~~t----~d   89 (300)
                      .++++|.|+||+|++|++++..|...+.  +|+++++......     ...+...       .....+..+.+.    .+
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~  144 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD  144 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEE--EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCC--EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence            4567999999999999999999977665  8999988653111     1111110       001133332211    12


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +. ++.++|+||.+|+..... .+..+.+..|+.....+++.+.+  ....+|.+|
T Consensus       145 l~-~~~~~d~Vih~A~~~~~~-~~~~~~~~~Nv~g~~~l~~aa~~--~~~~~v~~S  196 (427)
T 4f6c_A          145 VV-LPENMDTIIHAGARTDHF-GDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVS  196 (427)
T ss_dssp             CC-CSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH--TTCEEEEEE
T ss_pred             CC-CcCCCCEEEECCcccCCC-CCHHHHHHHHHHHHHHHHHHHHh--cCCcEEEEC
Confidence            32 578999999999865322 34456778899999999999988  334454443

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.65  E-value=0.0001  Score=67.50  Aligned_cols=66  Identities=23%  Similarity=0.232  Sum_probs=47.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCC-CCCEEEEEecCCc---c--cHHHHhccccCCCcEEEEecCC-ccccccCCCCEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANT---P--GVAADVGHINTRSEVAGYMGND-QLGQALEDSDVV  100 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~-~~~el~L~D~~~~---~--g~~~dl~~~~~~~~v~~~~~t~-d~~~a~~~aDiV  100 (300)
                      +|||+|||+ |.+|..++..|+..| +  +|.++|+++.   +  .....+....    +     .+ ++++++++||+|
T Consensus        24 ~m~IgvIG~-G~mG~~lA~~L~~~G~~--~V~~~dr~~~~~~~~~~~~~~~~~~g----~-----~~~s~~e~~~~aDvV   91 (317)
T 4ezb_A           24 MTTIAFIGF-GEAAQSIAGGLGGRNAA--RLAAYDLRFNDPAASGALRARAAELG----V-----EPLDDVAGIACADVV   91 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCS--EEEEECGGGGCTTTHHHHHHHHHHTT----C-----EEESSGGGGGGCSEE
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHcCCC--eEEEEeCCCccccchHHHHHHHHHCC----C-----CCCCHHHHHhcCCEE
Confidence            479999995 999999999999988 6  9999999641   1  1122222211    1     12 456889999999


Q ss_pred             EEcCC
Q 022263          101 IIPAG  105 (300)
Q Consensus       101 Ii~ag  105 (300)
                      |++..
T Consensus        92 i~avp   96 (317)
T 4ezb_A           92 LSLVV   96 (317)
T ss_dssp             EECCC
T ss_pred             EEecC
Confidence            99864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.64  E-value=0.00042  Score=61.31  Aligned_cols=96  Identities=11%  Similarity=0.071  Sum_probs=60.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCccccccCCCCEEEEcCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d~~~a~~~aDiVIi~ag~  106 (300)
                      +|||.|+|| |++|++++..|...+.  +|+.++++.....  .+...    .++.+.+ -+|++  ++++|+||++|+.
T Consensus         5 ~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~----~~~~~~~D~~d~~--~~~~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGH-GYTARVLSRALAPQGW--RIIGTSRNPDQME--AIRAS----GAEPLLWPGEEPS--LDGVTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETC-CHHHHHHHHHHGGGTC--EEEEEESCGGGHH--HHHHT----TEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHCCC--EEEEEEcChhhhh--hHhhC----CCeEEEecccccc--cCCCCEEEECCCc
Confidence            479999997 9999999999999887  8999998653322  22221    2333222 13443  8999999999985


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEec
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~t  145 (300)
                      ....           .+..+.+.+.+++.+ .-..+|.+|
T Consensus        74 ~~~~-----------~~~~~~l~~a~~~~~~~~~~~v~~S  102 (286)
T 3ius_A           74 DSGG-----------DPVLAALGDQIAARAAQFRWVGYLS  102 (286)
T ss_dssp             BTTB-----------CHHHHHHHHHHHHTGGGCSEEEEEE
T ss_pred             cccc-----------cHHHHHHHHHHHhhcCCceEEEEee
Confidence            4211           122356666666642 223444443

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.64  E-value=9.5e-05  Score=69.03  Aligned_cols=92  Identities=15%  Similarity=0.233  Sum_probs=62.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCC---CEEEEcC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDS---DVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~a---DiVIi~a  104 (300)
                      +|||+|||. |.+|..++..|...++  +|.+||+++.+..  ++....    +.   .+++++++++++   |+||++.
T Consensus        22 ~mkIgiIGl-G~mG~~~A~~L~~~G~--~V~v~dr~~~~~~--~l~~~g----~~---~~~s~~e~~~~a~~~DvVi~~v   89 (358)
T 4e21_A           22 SMQIGMIGL-GRMGADMVRRLRKGGH--ECVVYDLNVNAVQ--ALEREG----IA---GARSIEEFCAKLVKPRVVWLMV   89 (358)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHTTT----CB---CCSSHHHHHHHSCSSCEEEECS
T ss_pred             CCEEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHHCC----CE---EeCCHHHHHhcCCCCCEEEEeC
Confidence            479999995 9999999999999997  9999998653222  333321    11   134666777888   9999985


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (300)
                      ..+                .++++++.+.... |+.++|..||-
T Consensus        90 p~~----------------~v~~vl~~l~~~l~~g~iiId~st~  117 (358)
T 4e21_A           90 PAA----------------VVDSMLQRMTPLLAANDIVIDGGNS  117 (358)
T ss_dssp             CGG----------------GHHHHHHHHGGGCCTTCEEEECSSC
T ss_pred             CHH----------------HHHHHHHHHHhhCCCCCEEEeCCCC
Confidence            321                2344455666554 57777777653

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.62  E-value=4.1e-05  Score=70.22  Aligned_cols=90  Identities=19%  Similarity=0.141  Sum_probs=60.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHH---HhccccCCCcEEEEecC----CccccccC--C
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAA---DVGHINTRSEVAGYMGN----DQLGQALE--D   96 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~---dl~~~~~~~~v~~~~~t----~d~~~a~~--~   96 (300)
                      +|||.|+||+|++|++++..|+..+.  +|++++++..  .....   ++...    .+..+.+.    .++.++++  +
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~l~~~----~v~~~~~Dl~d~~~l~~~~~~~~   83 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR--PTYILARPGPRSPSKAKIFKALEDK----GAIIVYGLINEQEAMEKILKEHE   83 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC--CEEEEECSSCCCHHHHHHHHHHHHT----TCEEEECCTTCHHHHHHHHHHTT
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC--CEEEEECCCCCChhHHHHHHHHHhC----CcEEEEeecCCHHHHHHHHhhCC
Confidence            46899999999999999999998886  8999998651  11111   22211    22222211    23456778  9


Q ss_pred             CCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC
Q 022263           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (300)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~  136 (300)
                      +|+||++++..             |....+.+++.+++.+
T Consensus        84 ~d~Vi~~a~~~-------------n~~~~~~l~~aa~~~g  110 (346)
T 3i6i_A           84 IDIVVSTVGGE-------------SILDQIALVKAMKAVG  110 (346)
T ss_dssp             CCEEEECCCGG-------------GGGGHHHHHHHHHHHC
T ss_pred             CCEEEECCchh-------------hHHHHHHHHHHHHHcC
Confidence            99999998752             5555677888888776

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.62  E-value=3.4e-05  Score=58.99  Aligned_cols=72  Identities=25%  Similarity=0.275  Sum_probs=47.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCC-CCCEEEEEecCCcccHHHHhccccCCCcEEEEecC--CccccccCCCCEEEEc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN--DQLGQALEDSDVVIIP  103 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t--~d~~~a~~~aDiVIi~  103 (300)
                      .++||+|+|+ |.+|..++..|...+ .  +++++|+++.+..  .+.+..  ........+  .++.+.++++|+||.+
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~--~v~~~~r~~~~~~--~~~~~~--~~~~~~d~~~~~~~~~~~~~~d~vi~~   76 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNY--SVTVADHDLAALA--VLNRMG--VATKQVDAKDEAGLAKALGGFDAVISA   76 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSE--EEEEEESCHHHHH--HHHTTT--CEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCc--eEEEEeCCHHHHH--HHHhCC--CcEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            4579999997 999999999999888 4  8999998653222  122111  011111111  2345678899999999


Q ss_pred             CC
Q 022263          104 AG  105 (300)
Q Consensus       104 ag  105 (300)
                      ++
T Consensus        77 ~~   78 (118)
T 3ic5_A           77 AP   78 (118)
T ss_dssp             SC
T ss_pred             CC
Confidence            74

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.62  E-value=0.00031  Score=55.90  Aligned_cols=122  Identities=15%  Similarity=0.108  Sum_probs=68.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc---ccc-ccCCCCEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQ-ALEDSDVVI  101 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~-a~~~aDiVI  101 (300)
                      ++++|.|+|+ |.+|+.++..|...|.  +++++|.++....  ++.+..    ...+.+ .++   +++ .++++|+||
T Consensus         5 ~~~~v~I~G~-G~iG~~la~~L~~~g~--~V~~id~~~~~~~--~~~~~~----~~~~~gd~~~~~~l~~~~~~~~d~vi   75 (141)
T 3llv_A            5 GRYEYIVIGS-EAAGVGLVRELTAAGK--KVLAVDKSKEKIE--LLEDEG----FDAVIADPTDESFYRSLDLEGVSAVL   75 (141)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHHHH--HHHHTT----CEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHHHH--HHHHCC----CcEEECCCCCHHHHHhCCcccCCEEE
Confidence            3568999996 9999999999999887  8999998653222  222211    111111 112   111 257899999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHH
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA  181 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~  181 (300)
                      ++.+.           ...|..    ++..+++.+..-++..+.+|.+      .+.++..|   -+.++--..+-..++
T Consensus        76 ~~~~~-----------~~~n~~----~~~~a~~~~~~~iia~~~~~~~------~~~l~~~G---~~~vi~p~~~~~~~l  131 (141)
T 3llv_A           76 ITGSD-----------DEFNLK----ILKALRSVSDVYAIVRVSSPKK------KEEFEEAG---ANLVVLVADAVKQAF  131 (141)
T ss_dssp             ECCSC-----------HHHHHH----HHHHHHHHCCCCEEEEESCGGG------HHHHHHTT---CSEEEEHHHHHHHHH
T ss_pred             EecCC-----------HHHHHH----HHHHHHHhCCceEEEEEcChhH------HHHHHHcC---CCEEECHHHHHHHHH
Confidence            98641           133433    3444555553334444556654      23445555   455655433333333

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.62  E-value=0.00019  Score=69.64  Aligned_cols=101  Identities=12%  Similarity=0.164  Sum_probs=65.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCC---CCEEEE
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED---SDVVII  102 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~---aDiVIi  102 (300)
                      ...+||+|||+ |.+|..++..|+..|+  +|.++|+++.+..  ++........+..   ++++++++++   +|+||+
T Consensus        13 ~~~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~~r~~~~~~--~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVil   84 (480)
T 2zyd_A           13 MSKQQIGVVGM-AVMGRNLALNIESRGY--TVSIFNRSREKTE--EVIAENPGKKLVP---YYTVKEFVESLETPRRILL   84 (480)
T ss_dssp             --CBSEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHHHH--HHHHHSTTSCEEE---CSSHHHHHHTBCSSCEEEE
T ss_pred             cCCCeEEEEcc-HHHHHHHHHHHHhCCC--eEEEEeCCHHHHH--HHHhhCCCCCeEE---eCCHHHHHhCCCCCCEEEE
Confidence            34578999995 9999999999999887  8999998653222  2222100012332   3466666666   999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCc
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (300)
                      +...+    .           .++++++.+..+- |+.++|..+|...
T Consensus        85 ~Vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~s~g~~  117 (480)
T 2zyd_A           85 MVKAG----A-----------GTDAAIDSLKPYLDKGDIIIDGGNTFF  117 (480)
T ss_dssp             CSCSS----S-----------HHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             ECCCH----H-----------HHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence            86321    1           1344555666554 5778888888764

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.62  E-value=0.00012  Score=67.21  Aligned_cols=94  Identities=20%  Similarity=0.285  Sum_probs=59.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccc-c-------CC--CcEEEEecCCccccccCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-N-------TR--SEVAGYMGNDQLGQALEDS   97 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~-~-------~~--~~v~~~~~t~d~~~a~~~a   97 (300)
                      +|||+|||+ |.+|..++..|...++  +|.++|+++....  .+... .       ..  ..+..  .+++++++++++
T Consensus         4 ~mki~iiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   76 (359)
T 1bg6_A            4 SKTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIK--EIQDRGAIIAEGPGLAGTAHPDL--LTSDIGLAVKDA   76 (359)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHHHTSEEEESSSCCEEECCSE--EESCHHHHHTTC
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHhcCCeEEeccccccccccce--ecCCHHHHHhcC
Confidence            479999996 9999999999998887  8999998643222  12111 0       00  01101  134666778999


Q ss_pred             CEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEe
Q 022263           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI  144 (300)
Q Consensus        98 DiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~  144 (300)
                      |+||++....            .    ..++++.+..+. ++.+++..
T Consensus        77 D~vi~~v~~~------------~----~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           77 DVILIVVPAI------------H----HASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             SEEEECSCGG------------G----HHHHHHHHGGGCCTTCEEEES
T ss_pred             CEEEEeCCch------------H----HHHHHHHHHHhCCCCCEEEEc
Confidence            9999986432            0    134556666554 46666555

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.61  E-value=8.4e-05  Score=65.54  Aligned_cols=91  Identities=18%  Similarity=0.211  Sum_probs=58.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCC-CCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      |||+|||+ |.+|..++..|...+ .  +|.++|+++.+..  .+.+..   .+...   .++.+++ ++|+||++.. +
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~~--~v~~~~r~~~~~~--~~~~~~---g~~~~---~~~~~~~-~~D~vi~~v~-~   67 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQGGY--RIYIANRGAEKRE--RLEKEL---GVETS---ATLPELH-SDDVLILAVK-P   67 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSC--EEEEECSSHHHHH--HHHHHT---CCEEE---SSCCCCC-TTSEEEECSC-H
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCC--eEEEECCCHHHHH--HHHHhc---CCEEe---CCHHHHh-cCCEEEEEeC-c
Confidence            69999995 999999999998877 5  8999998643222  222211   12222   3455778 9999999853 1


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                                     ..+.++.+.+.. . +.+++.++|...
T Consensus        68 ---------------~~~~~v~~~l~~-~-~~ivv~~~~g~~   92 (263)
T 1yqg_A           68 ---------------QDMEAACKNIRT-N-GALVLSVAAGLS   92 (263)
T ss_dssp             ---------------HHHHHHHTTCCC-T-TCEEEECCTTCC
T ss_pred             ---------------hhHHHHHHHhcc-C-CCEEEEecCCCC
Confidence                           123344444433 2 666666666665

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.60  E-value=0.00022  Score=64.53  Aligned_cols=78  Identities=17%  Similarity=0.332  Sum_probs=55.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      ++||+||||+|.+|..++..|...|+  +|.++|.++..                      +..+++++||+||++....
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~--~V~~~~~~~~~----------------------~~~~~~~~aDvVilavp~~   76 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGY--PISILDREDWA----------------------VAESILANADVVIVSVPIN   76 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTCGG----------------------GHHHHHTTCSEEEECSCGG
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCC--eEEEEECCccc----------------------CHHHHhcCCCEEEEeCCHH
Confidence            35899999339999999999999887  89999875421                      2346789999999986321


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEec
Q 022263          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~t  145 (300)
                                  .    +.++++.+..+. |+++++.++
T Consensus        77 ------------~----~~~vl~~l~~~l~~~~iv~~~~   99 (298)
T 2pv7_A           77 ------------L----TLETIERLKPYLTENMLLADLT   99 (298)
T ss_dssp             ------------G----HHHHHHHHGGGCCTTSEEEECC
T ss_pred             ------------H----HHHHHHHHHhhcCCCcEEEECC
Confidence                        1    445556666543 577666553

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=97.60  E-value=5.6e-05  Score=70.09  Aligned_cols=115  Identities=10%  Similarity=-0.071  Sum_probs=68.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc---HHHHhcccc--CCC-cEEEEecC-C---ccccccCC--
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHIN--TRS-EVAGYMGN-D---QLGQALED--   96 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g---~~~dl~~~~--~~~-~v~~~~~t-~---d~~~a~~~--   96 (300)
                      ++|.|+||+|++|++++..|+..|.  +|+++|+.....   ...++....  ... .+..+.+. .   ++.+++++  
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  106 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK  106 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--EEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcC
Confidence            5899999999999999999999886  899999854321   011111000  000 23322221 1   23345554  


Q ss_pred             CCEEEEcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhC----CCeEEEEec
Q 022263           97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYC----PNAIVNMIS  145 (300)
Q Consensus        97 aDiVIi~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~----p~a~viv~t  145 (300)
                      .|+||++|+.....  ..+....+..|+.....+++.+.+..    +.+.+|.+|
T Consensus       107 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~S  161 (381)
T 1n7h_A          107 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAG  161 (381)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeC
Confidence            59999999864311  01233456677777778887777654    234666654

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=97.60  E-value=0.00045  Score=63.85  Aligned_cols=104  Identities=19%  Similarity=0.142  Sum_probs=67.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-----CccccccCCCCEEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-----DQLGQALEDSDVVII  102 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~~a~~~aDiVIi  102 (300)
                      +|+|.|+||+|++|++++..|+..+.  +|+.++++.......++....   .+..+.+.     .++.++++++|+||+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~l~~~~---~v~~v~~D~l~d~~~l~~~~~~~d~Vi~   79 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAIP---NVTLFQGPLLNNVPLMDTLFEGAHLAFI   79 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTST---TEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCChhhHHHHhhcC---CcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence            46899999999999999999988886  899998865433222333211   23322221     125567899999998


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (300)
                      .++...   .      ..|... +.+++.+.+.. .. .+|.+|..
T Consensus        80 ~a~~~~---~------~~~~~~-~~l~~aa~~~g~v~-~~V~~SS~  114 (352)
T 1xgk_A           80 NTTSQA---G------DEIAIG-KDLADAAKRAGTIQ-HYIYSSMP  114 (352)
T ss_dssp             CCCSTT---S------CHHHHH-HHHHHHHHHHSCCS-EEEEEECC
T ss_pred             cCCCCC---c------HHHHHH-HHHHHHHHHcCCcc-EEEEeCCc
Confidence            875421   0      235544 77888887775 33 45556544

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=97.60  E-value=0.00013  Score=66.33  Aligned_cols=113  Identities=19%  Similarity=0.135  Sum_probs=69.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEecC-Cc---cccccC--CCCEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LGQALE--DSDVV  100 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~~--~aDiV  100 (300)
                      |||.|+||+|++|++++..|+..|.  +|+++|....  .....++..... ..+..+.+. +|   +.++++  +.|+|
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~D~v   77 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLGG-KHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHHT-SCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCCcchhHHHHHHhhcC-CcceEEEccCCCHHHHHHHhhccCCCEE
Confidence            6899999999999999999999887  8999986321  111122221100 112222111 12   233444  59999


Q ss_pred             EEcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       101 Ii~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      |++||.....  .....+.+..|+.....+++.+++.... .+|.+|
T Consensus        78 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  123 (338)
T 1udb_A           78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSS  123 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             EECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEEc
Confidence            9999864211  0122346678999899999988877544 344443

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=97.60  E-value=2.6e-05  Score=69.96  Aligned_cols=163  Identities=12%  Similarity=0.067  Sum_probs=90.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhC--CCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCccccccC--CCCEEEEc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALE--DSDVVIIP  103 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~--~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~~--~aDiVIi~  103 (300)
                      |||.|+||+|++|++++..|...  +.  +|+++|+........  ....   .+.. .....+++++++  ++|+||++
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~--~~~~---~~~~D~~d~~~~~~~~~~~~~d~vih~   75 (312)
T 2yy7_A            3 PKILIIGACGQIGTELTQKLRKLYGTE--NVIASDIRKLNTDVV--NSGP---FEVVNALDFNQIEHLVEVHKITDIYLM   75 (312)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHHHCGG--GEEEEESCCCSCHHH--HSSC---EEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEECCccHHHHHHHHHHHHhCCCC--EEEEEcCCCcccccc--CCCc---eEEecCCCHHHHHHHHhhcCCCEEEEC
Confidence            68999999999999999988886  65  799999865332211  1110   1111 000112345566  89999999


Q ss_pred             CCCCCCC-CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccH----HHHHHHHHHhCCCCCCcEEEeeehhH
Q 022263          104 AGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV----PIAAEVFKKAGTYNEKKLFGVTTLDV  178 (300)
Q Consensus       104 ag~~~~~-g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~----~i~~~~~~~~~~~~~~kviG~t~Lds  178 (300)
                      |+..... ..+..+.+..|+.....+++.+.+.... .+|.+|...-.-.    ....   .... ..+....|.+.+..
T Consensus        76 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~---e~~~-~~~~~~Y~~sK~~~  150 (312)
T 2yy7_A           76 AALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIK-KIFWPSSIAVFGPTTPKENTP---QYTI-MEPSTVYGISKQAG  150 (312)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCS-EEECCEEGGGCCTTSCSSSBC---SSCB-CCCCSHHHHHHHHH
T ss_pred             CccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHHhCCCCCCCCcc---ccCc-CCCCchhHHHHHHH
Confidence            9864211 1233456778999999999998876433 4444432110000    0000   0000 11222333343444


Q ss_pred             HHHHHHHHHHcCCCCCceE-EEEEec
Q 022263          179 VRAKTFYAGKANVNVAEVN-VPVVGG  203 (300)
Q Consensus       179 ~R~~~~la~~l~v~~~~V~-~~v~G~  203 (300)
                      .++...+++..+++..-++ ..++|.
T Consensus       151 e~~~~~~~~~~~~~~~~lrp~~v~g~  176 (312)
T 2yy7_A          151 ERWCEYYHNIYGVDVRSIRYPGLISW  176 (312)
T ss_dssp             HHHHHHHHHHHCCEEECEEECEEECS
T ss_pred             HHHHHHHHHhcCCcEEEEeCCeEecC
Confidence            4454555666677666665 567784

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.59  E-value=0.00024  Score=68.91  Aligned_cols=99  Identities=16%  Similarity=0.196  Sum_probs=64.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhcccc-CCCcEEEEecCCcccccc---CCCCEEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN-TRSEVAGYMGNDQLGQAL---EDSDVVII  102 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~-~~~~v~~~~~t~d~~~a~---~~aDiVIi  102 (300)
                      .+|||+|||. |.||.+++..|...|+  +|.++|+++.+..  ++.... ....+..   ++++++++   +++|+||+
T Consensus         3 ~~~kIgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~~~--~l~~~g~~g~~i~~---~~s~~e~v~~l~~aDvVil   74 (484)
T 4gwg_A            3 AQADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSKVD--DFLANEAKGTKVVG---AQSLKEMVSKLKKPRRIIL   74 (484)
T ss_dssp             CCBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHHHH--HHHHTTTTTSSCEE---CSSHHHHHHTBCSSCEEEE
T ss_pred             CCCEEEEECh-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHhcccCCCceec---cCCHHHHHhhccCCCEEEE
Confidence            4689999995 9999999999999998  8999999764332  222211 1112322   23555554   46999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (300)
                      +...+               +.++++++.+..+- |+.++|..+|-.
T Consensus        75 ~Vp~~---------------~~v~~vl~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           75 LVKAG---------------QAVDDFIEKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             CSCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             ecCCh---------------HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence            86321               22344555666554 677887777644

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.58  E-value=0.00014  Score=57.47  Aligned_cols=115  Identities=15%  Similarity=0.187  Sum_probs=65.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc---cccc-cCCCCEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-LEDSDVVI  101 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~a-~~~aDiVI  101 (300)
                      ++++|.|+|+ |.+|..++..|...+.  +++++|.++..  ...+.+..    ...+.+. ++   ++++ ++++|+||
T Consensus         5 ~~~~v~I~G~-G~iG~~~a~~l~~~g~--~v~~~d~~~~~--~~~~~~~~----~~~~~~d~~~~~~l~~~~~~~~d~vi   75 (144)
T 2hmt_A            5 KNKQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEEK--VNAYASYA----THAVIANATEENELLSLGIRNFEYVI   75 (144)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHHH--HHTTTTTC----SEEEECCTTCHHHHHTTTGGGCSEEE
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhC----CEEEEeCCCCHHHHHhcCCCCCCEEE
Confidence            3457999996 9999999999998886  79999985421  11122211    1111111 12   2222 67899999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      ++++.+          ...|..    ++..+++.+|+-++...+||..      .+.++..|   ..+++.-
T Consensus        76 ~~~~~~----------~~~~~~----~~~~~~~~~~~~ii~~~~~~~~------~~~l~~~g---~~~vi~p  124 (144)
T 2hmt_A           76 VAIGAN----------IQASTL----TTLLLKELDIPNIWVKAQNYYH------HKVLEKIG---ADRIIHP  124 (144)
T ss_dssp             ECCCSC----------HHHHHH----HHHHHHHTTCSEEEEECCSHHH------HHHHHHHT---CSEEECH
T ss_pred             ECCCCc----------hHHHHH----HHHHHHHcCCCeEEEEeCCHHH------HHHHHHcC---CCEEECc
Confidence            987642          123332    4444556677745545555554      23445544   4556543

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.58  E-value=0.00015  Score=65.20  Aligned_cols=66  Identities=15%  Similarity=0.285  Sum_probs=48.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      +|||+|||+ |.+|..++..|...++  +|.++|+++.+..  .+.+.    .+..   .++++++++++|+||++..
T Consensus         4 ~~~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~----g~~~---~~~~~~~~~~~D~vi~~vp   69 (301)
T 3cky_A            4 SIKIGFIGL-GAMGKPMAINLLKEGV--TVYAFDLMEANVA--AVVAQ----GAQA---CENNQKVAAASDIIFTSLP   69 (301)
T ss_dssp             CCEEEEECC-CTTHHHHHHHHHHTTC--EEEEECSSHHHHH--HHHTT----TCEE---CSSHHHHHHHCSEEEECCS
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHC----CCee---cCCHHHHHhCCCEEEEECC
Confidence            579999995 9999999999998887  8999998643222  23222    1222   2456677889999999863

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.58  E-value=0.00021  Score=64.11  Aligned_cols=97  Identities=15%  Similarity=0.013  Sum_probs=61.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cHHHHhccccCCCcEEEEecC----CccccccCCCCEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVV  100 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aDiV  100 (300)
                      +|||.|+||+|++|++++..|+..+.  +|++++++...   .....+..... ..+..+.+.    .++.++++++|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~l~~~~~~~d~v   80 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFKQ-LGAKLIEASLDDHQRLVDALKQVDVV   80 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHHT-TTCEEECCCSSCHHHHHHHHTTCSEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--cEEEEECCCcccchhHHHHHHHHHh-CCeEEEeCCCCCHHHHHHHHhCCCEE
Confidence            57899999999999999999998886  89999886421   11111211100 122222111    2356788999999


Q ss_pred             EEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC
Q 022263          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (300)
Q Consensus       101 Ii~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~  136 (300)
                      |++++.... +        .|....+.+++.+.+.+
T Consensus        81 i~~a~~~~~-~--------~~~~~~~~l~~aa~~~g  107 (313)
T 1qyd_A           81 ISALAGGVL-S--------HHILEQLKLVEAIKEAG  107 (313)
T ss_dssp             EECCCCSSS-S--------TTTTTHHHHHHHHHHSC
T ss_pred             EECCccccc-h--------hhHHHHHHHHHHHHhcC
Confidence            999886421 1        13444566777777665

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.58  E-value=0.00011  Score=66.86  Aligned_cols=66  Identities=11%  Similarity=0.098  Sum_probs=48.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      +|||+|||+ |.+|..++..|...++  +|.++|+++.+..  .+...    .+..   ..+++++++++|+||++..
T Consensus        30 ~~~I~iIG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~----g~~~---~~~~~~~~~~~DvVi~av~   95 (316)
T 2uyy_A           30 DKKIGFLGL-GLMGSGIVSNLLKMGH--TVTVWNRTAEKCD--LFIQE----GARL---GRTPAEVVSTCDITFACVS   95 (316)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSGGGGH--HHHHT----TCEE---CSCHHHHHHHCSEEEECCS
T ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHHc----CCEE---cCCHHHHHhcCCEEEEeCC
Confidence            479999995 9999999999998887  8999998654332  22221    1222   2355677899999999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.57  E-value=0.00011  Score=59.12  Aligned_cols=94  Identities=14%  Similarity=0.208  Sum_probs=61.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      .+||+|||+ |.+|..++..|...+.  ++.++|+++.+.+  ++.... ...+..   .++++++++++|+||.+.+.+
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~--~v~v~~r~~~~~~--~~a~~~-~~~~~~---~~~~~~~~~~~Divi~at~~~   91 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQY--KVTVAGRNIDHVR--AFAEKY-EYEYVL---INDIDSLIKNNDVIITATSSK   91 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTC--EEEEEESCHHHHH--HHHHHH-TCEEEE---CSCHHHHHHTCSEEEECSCCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCHHHHH--HHHHHh-CCceEe---ecCHHHHhcCCCEEEEeCCCC
Confidence            459999995 9999999988887775  5999998654322  111111 012221   346677889999999987654


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      . +-... +.                 ..|..+++.+++|.|
T Consensus        92 ~-~~~~~-~~-----------------l~~g~~vid~~~p~~  114 (144)
T 3oj0_A           92 T-PIVEE-RS-----------------LMPGKLFIDLGNPPN  114 (144)
T ss_dssp             S-CSBCG-GG-----------------CCTTCEEEECCSSCS
T ss_pred             C-cEeeH-HH-----------------cCCCCEEEEccCCcc
Confidence            2 11111 11                 234788889999987

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=97.57  E-value=8.4e-05  Score=66.51  Aligned_cols=74  Identities=22%  Similarity=0.253  Sum_probs=50.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC-------cccH-HHHhccccCCCcEEEEecC----CccccccC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-------TPGV-AADVGHINTRSEVAGYMGN----DQLGQALE   95 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~-------~~g~-~~dl~~~~~~~~v~~~~~t----~d~~~a~~   95 (300)
                      ++||.|+||+|++|++++..|+..+.  +++.++++.       .+.. ..++.+.    .++.+.+.    .++.++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~l~~~----~v~~v~~D~~d~~~l~~~~~   75 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN--PTYALVRKTITAANPETKEELIDNYQSL----GVILLEGDINDHETLVKAIK   75 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC--CEEEEECCSCCSSCHHHHHHHHHHHHHT----TCEEEECCTTCHHHHHHHHT
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC--cEEEEECCCcccCChHHHHHHHHHHHhC----CCEEEEeCCCCHHHHHHHHh
Confidence            57899999999999999999998886  788888864       1111 1122211    12222111    23567789


Q ss_pred             CCCEEEEcCCCC
Q 022263           96 DSDVVIIPAGVP  107 (300)
Q Consensus        96 ~aDiVIi~ag~~  107 (300)
                      ++|+||++++..
T Consensus        76 ~~d~vi~~a~~~   87 (307)
T 2gas_A           76 QVDIVICAAGRL   87 (307)
T ss_dssp             TCSEEEECSSSS
T ss_pred             CCCEEEECCccc
Confidence            999999998854

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.57  E-value=0.0011  Score=57.70  Aligned_cols=152  Identities=13%  Similarity=0.160  Sum_probs=83.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc-------c
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA-------L   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~   94 (300)
                      .+++.|+||+|.+|.+++..|++.|.  +|+++|++...  ....++....  ..+..+.. -+|   .++.       +
T Consensus         9 ~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            9 NKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999987  89999986532  2222332211  12222211 112   1122       2


Q ss_pred             CCCCEEEEcCCCCC--CC----CCc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHH
Q 022263           95 EDSDVVIIPAGVPR--KP----GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKK  161 (300)
Q Consensus        95 ~~aDiVIi~ag~~~--~~----g~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~  161 (300)
                      ...|++|..||...  ..    ..+   -.+.+..|+.-    .+.+.+.+.+.. .+.+|+++....            
T Consensus        85 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~------------  151 (253)
T 3qiv_A           85 GGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG-GGAIVNQSSTAA------------  151 (253)
T ss_dssp             SCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC---------------
T ss_pred             CCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEECCccc------------
Confidence            38999999998731  11    111   22345556654    666666666554 566776764332            


Q ss_pred             hCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       162 ~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                         ++....++.+..--..+...++++++  +..|++..+
T Consensus       152 ---~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  186 (253)
T 3qiv_A          152 ---WLYSNYYGLAKVGINGLTQQLSRELG--GRNIRINAI  186 (253)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTT--TTTEEEEEE
T ss_pred             ---cCCCchhHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence               12233455654444456777888874  345554444

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.57  E-value=0.00034  Score=63.45  Aligned_cols=64  Identities=17%  Similarity=0.303  Sum_probs=44.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ||++|| .|.||..+|..|+..|+  +|+.||+++.+.+  ++.+.    ..+.   .+++.++++++|+||++..
T Consensus         7 kIgfIG-LG~MG~~mA~~L~~~G~--~V~v~dr~~~~~~--~l~~~----G~~~---~~s~~e~~~~~dvvi~~l~   70 (297)
T 4gbj_A            7 KIAFLG-LGNLGTPIAEILLEAGY--ELVVWNRTASKAE--PLTKL----GATV---VENAIDAITPGGIVFSVLA   70 (297)
T ss_dssp             EEEEEC-CSTTHHHHHHHHHHTTC--EEEEC-------C--TTTTT----TCEE---CSSGGGGCCTTCEEEECCS
T ss_pred             cEEEEe-cHHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHc----CCeE---eCCHHHHHhcCCceeeecc
Confidence            899999 59999999999999998  9999998664322  23322    1222   2456788999999999853

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=97.56  E-value=0.00024  Score=71.23  Aligned_cols=111  Identities=15%  Similarity=0.122  Sum_probs=72.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhC-CCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc----cccccCCCCEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ----LGQALEDSDVV  100 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d----~~~a~~~aDiV  100 (300)
                      ++|+|.|+||+|++|++++..|+.. +.  +|+++|+......  ++..   ...+..+.+. +|    ++++++++|+|
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~--~V~~~~r~~~~~~--~~~~---~~~v~~v~~Dl~d~~~~~~~~~~~~D~V  386 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAIS--RFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVV  386 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSE--EEEEEESCCTTTG--GGTT---CTTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCC--EEEEEEcCchhhh--hhcc---CCceEEEECCCCCcHHHHHHhhcCCCEE
Confidence            5679999999999999999999886 66  8999998543211  1111   1123332221 12    33456789999


Q ss_pred             EEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       101 Ii~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      |++|+....+.  .+..+.+..|+.....+++.+.+..  ..+|.+|.
T Consensus       387 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~--~r~V~~SS  432 (660)
T 1z7e_A          387 LPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPST  432 (660)
T ss_dssp             EECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             EECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC--CEEEEEec
Confidence            99998653211  1234466778888888998888765  45555553

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=97.56  E-value=3.3e-05  Score=67.91  Aligned_cols=101  Identities=19%  Similarity=0.206  Sum_probs=66.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCccccccCC--CCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALED--SDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~~~--aDiVIi~ag  105 (300)
                      |||.|+||+|++|++++..|+. +.  +|++++++....     .      .+.. .....++.+++++  +|+||++||
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~--~V~~~~r~~~~~-----~------~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   66 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RH--EVIKVYNSSEIQ-----G------GYKLDLTDFPRLEDFIIKKRPDVIINAAA   66 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TS--CEEEEESSSCCT-----T------CEECCTTSHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CC--eEEEecCCCcCC-----C------CceeccCCHHHHHHHHHhcCCCEEEECCc
Confidence            5899999999999999999885 64  899998864211     0      0111 0000123445665  999999998


Q ss_pred             CCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          106 VPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       106 ~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      .....  ..+..+.+..|+.....+++.+.+..  +.+|.+|
T Consensus        67 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~iv~~S  106 (273)
T 2ggs_A           67 MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVID--SYIVHIS  106 (273)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT--CEEEEEE
T ss_pred             ccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhC--CeEEEEe
Confidence            64311  12334566778888889998888754  3555554

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.56  E-value=7.6e-05  Score=66.02  Aligned_cols=94  Identities=13%  Similarity=0.112  Sum_probs=59.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHhC--CCCCEEEEEecCCcccHHHHhccccCCCcEEEEec----CCccccccCCCCEEEEc
Q 022263           30 KVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVIIP  103 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~--~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aDiVIi~  103 (300)
                      ||.|+||+|++|++++..|...  +.  +|+.++++......  +.+.    .+..+.+    ..++.++++++|+||++
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~--~~~~----~~~~~~~D~~d~~~~~~~~~~~d~vi~~   72 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS--QIVAIVRNPAKAQA--LAAQ----GITVRQADYGDEAALTSALQGVEKLLLI   72 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTCHH--HHHT----TCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc--eEEEEEcChHhhhh--hhcC----CCeEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence            5899999999999999999887  65  89999986543321  2111    1121111    12355678999999999


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEE
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~v  141 (300)
                      ++...          ..|....+.+++.+.+....-++
T Consensus        73 a~~~~----------~~~~~~~~~l~~a~~~~~~~~~v  100 (286)
T 2zcu_A           73 SSSEV----------GQRAPQHRNVINAAKAAGVKFIA  100 (286)
T ss_dssp             C------------------CHHHHHHHHHHHHTCCEEE
T ss_pred             CCCCc----------hHHHHHHHHHHHHHHHcCCCEEE
Confidence            88531          13666777888888777544333

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.55  E-value=0.00021  Score=58.07  Aligned_cols=74  Identities=15%  Similarity=0.216  Sum_probs=46.9

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc---cccc-cCCCC
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-LEDSD   98 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~a-~~~aD   98 (300)
                      +....++|.|+|+ |.+|..++..|...+.  +++++|.++.+..  .+... .  ....+.+. .+   +.++ ++++|
T Consensus        15 ~~~~~~~v~IiG~-G~iG~~la~~L~~~g~--~V~vid~~~~~~~--~~~~~-~--g~~~~~~d~~~~~~l~~~~~~~ad   86 (155)
T 2g1u_A           15 KKQKSKYIVIFGC-GRLGSLIANLASSSGH--SVVVVDKNEYAFH--RLNSE-F--SGFTVVGDAAEFETLKECGMEKAD   86 (155)
T ss_dssp             --CCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCGGGGG--GSCTT-C--CSEEEESCTTSHHHHHTTTGGGCS
T ss_pred             cccCCCcEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHH--HHHhc-C--CCcEEEecCCCHHHHHHcCcccCC
Confidence            3445679999996 9999999999998887  8999998653222  22210 0  11111111 12   2223 67899


Q ss_pred             EEEEcCC
Q 022263           99 VVIIPAG  105 (300)
Q Consensus        99 iVIi~ag  105 (300)
                      +||++.+
T Consensus        87 ~Vi~~~~   93 (155)
T 2g1u_A           87 MVFAFTN   93 (155)
T ss_dssp             EEEECSS
T ss_pred             EEEEEeC
Confidence            9999865

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=97.55  E-value=0.0002  Score=69.29  Aligned_cols=113  Identities=16%  Similarity=0.146  Sum_probs=69.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-----HHHhccc-------cCCCcEEEEecC----Cc
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----AADVGHI-------NTRSEVAGYMGN----DQ   89 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-----~~dl~~~-------~~~~~v~~~~~t----~d   89 (300)
                      .++|+|.|+||+|++|++++..|...+.  +|+++++......     ...+...       .....+..+.+.    .+
T Consensus       148 ~~~~~VLVTGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~  225 (508)
T 4f6l_B          148 RPLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD  225 (508)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHTBTTEE--EEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSS
T ss_pred             CCCCeEEEECCccchHHHHHHHHHhcCC--EEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCccccc
Confidence            3568999999999999999999866665  8999988653211     0111110       011244443321    12


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Q 022263           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (300)
Q Consensus        90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~  144 (300)
                      +. ++.++|+||++|+... ...+..++...|+...+.+++.+.+ .. ..++.+
T Consensus       226 l~-~~~~~D~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~-~~-~~~v~i  276 (508)
T 4f6l_B          226 VV-LPENMDTIIHAGARTD-HFGDDDEFEKVNVQGTVDVIRLAQQ-HH-ARLIYV  276 (508)
T ss_dssp             CC-CSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT-TT-CEEEEE
T ss_pred             CC-CccCCCEEEECCceec-CCCCHHHHhhhHHHHHHHHHHHHHh-CC-CcEEEe
Confidence            22 5689999999998653 2233455677899999999999887 33 334444

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.54  E-value=7.2e-05  Score=67.56  Aligned_cols=78  Identities=18%  Similarity=0.201  Sum_probs=50.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC-c---ccHHHHhccccCCCcEEEEecC----CccccccCCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T---PGVAADVGHINTRSEVAGYMGN----DQLGQALEDSD   98 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~-~---~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aD   98 (300)
                      .+|+|.|+||+|++|++++..|+..+.  +|++++++. .   ......+..... ..+..+.+.    .++.++++++|
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~l~~~~~-~~v~~v~~D~~d~~~l~~a~~~~d   79 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSFSH--PTFIYARPLTPDSTPSSVQLREEFRS-MGVTIIEGEMEEHEKMVSVLKQVD   79 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECCCCTTCCHHHHHHHHHHHH-TTCEEEECCTTCHHHHHHHHTTCS
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhCCC--cEEEEECCcccccChHHHHHHHHhhc-CCcEEEEecCCCHHHHHHHHcCCC
Confidence            467899999999999999999999886  899998864 1   111111111000 012222111    23567889999


Q ss_pred             EEEEcCCCC
Q 022263           99 VVIIPAGVP  107 (300)
Q Consensus        99 iVIi~ag~~  107 (300)
                      +||++++..
T Consensus        80 ~vi~~a~~~   88 (321)
T 3c1o_A           80 IVISALPFP   88 (321)
T ss_dssp             EEEECCCGG
T ss_pred             EEEECCCcc
Confidence            999998753

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=97.53  E-value=4.8e-05  Score=64.09  Aligned_cols=104  Identities=13%  Similarity=0.177  Sum_probs=64.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcccccc---CCCCEEEEc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL---EDSDVVIIP  103 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~---~~aDiVIi~  103 (300)
                      .+|||.|+||+|.+|++++..|+ .|.  +|+++|++.. ....|+.+..            +.++++   ...|+||.+
T Consensus         2 ~kM~vlVtGasg~iG~~~~~~l~-~g~--~V~~~~r~~~-~~~~D~~~~~------------~~~~~~~~~~~~d~vi~~   65 (202)
T 3d7l_A            2 NAMKILLIGASGTLGSAVKERLE-KKA--EVITAGRHSG-DVTVDITNID------------SIKKMYEQVGKVDAIVSA   65 (202)
T ss_dssp             CSCEEEEETTTSHHHHHHHHHHT-TTS--EEEEEESSSS-SEECCTTCHH------------HHHHHHHHHCCEEEEEEC
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH-CCC--eEEEEecCcc-ceeeecCCHH------------HHHHHHHHhCCCCEEEEC
Confidence            34799999999999999999998 786  8999998642 1111222211            112223   358999999


Q ss_pred             CCCCCCCC---Cc---chhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecC
Q 022263          104 AGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISN  146 (300)
Q Consensus       104 ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tN  146 (300)
                      ||......   .+   ..+.+..|..-...+.+.+.+.-. .+.++++|.
T Consensus        66 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS  115 (202)
T 3d7l_A           66 TGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTG  115 (202)
T ss_dssp             CCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECC
T ss_pred             CCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcc
Confidence            99653221   11   123445677776777776665522 256666653

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.52  E-value=0.00015  Score=66.00  Aligned_cols=66  Identities=20%  Similarity=0.305  Sum_probs=49.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      .|+||++|| .|.||+.++..|+..|+  +++.||+++.+..  ++....    .+.   ..++.++.+++|+||.+.
T Consensus         2 ~M~kIgfIG-lG~MG~~mA~~L~~~G~--~v~v~dr~~~~~~--~l~~~G----a~~---a~s~~e~~~~~dvv~~~l   67 (300)
T 3obb_A            2 HMKQIAFIG-LGHMGAPMATNLLKAGY--LLNVFDLVQSAVD--GLVAAG----ASA---ARSARDAVQGADVVISML   67 (300)
T ss_dssp             -CCEEEEEC-CSTTHHHHHHHHHHTTC--EEEEECSSHHHHH--HHHHTT----CEE---CSSHHHHHTTCSEEEECC
T ss_pred             CcCEEEEee-ehHHHHHHHHHHHhCCC--eEEEEcCCHHHHH--HHHHcC----CEE---cCCHHHHHhcCCceeecC
Confidence            367999999 59999999999999998  9999998654332  343322    221   245678899999999974

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=97.48  E-value=0.00049  Score=60.04  Aligned_cols=105  Identities=16%  Similarity=0.203  Sum_probs=65.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc---HHHHhccccCCCcEEEEecCCcccccc----CCCCEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGYMGNDQLGQAL----EDSDVV  100 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g---~~~dl~~~~~~~~v~~~~~t~d~~~a~----~~aDiV  100 (300)
                      |++|.|+||+|.+|.+++..|+..|.  +|++.|++..+.   ...|+.+..            +.++++    ...|++
T Consensus         1 mk~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~Dl~~~~------------~v~~~~~~~~~~id~l   66 (257)
T 1fjh_A            1 MSIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEVIADLSTAEGRKQ------------AIADVLAKCSKGMDGL   66 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHHH------------HHHHHHTTCTTCCSEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhhccccccCCCCHH------------HHHHHHHHhCCCCCEE
Confidence            34799999999999999999999887  899999865321   223443321            111222    456999


Q ss_pred             EEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 022263          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (300)
Q Consensus       101 Ii~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  147 (300)
                      |.+||.....+ ...+.+..|..-...+.+.+.++   ...+.+|++|..
T Consensus        67 v~~Ag~~~~~~-~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~  115 (257)
T 1fjh_A           67 VLCAGLGPQTK-VLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSV  115 (257)
T ss_dssp             EECCCCCTTCS-SHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred             EECCCCCCCcc-cHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECCh
Confidence            99999754122 23445566655444444444322   234667767643

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.48  E-value=0.00059  Score=60.57  Aligned_cols=117  Identities=21%  Similarity=0.232  Sum_probs=70.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCcc---cccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQL---GQAL-------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d~---~~a~-------   94 (300)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++....  ...++........+..+.. -+|.   ++++       
T Consensus        32 ~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           32 DRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            35799999999999999999999887  899999864221  1222322211122332221 1121   1222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHH----HHHHHHHHHhhCC-CeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCP-NAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i----~~~i~~~i~~~~p-~a~viv~tN  146 (300)
                      .+.|+||.+||......   .+   ....+..|+.-    .+.+.+.+++... .+.+|+++.
T Consensus       110 g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS  172 (279)
T 1xg5_A          110 SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININS  172 (279)
T ss_dssp             CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence            37999999999653211   11   12344556554    6777888877653 466666653

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.47  E-value=9.1e-05  Score=69.78  Aligned_cols=97  Identities=18%  Similarity=0.188  Sum_probs=57.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHh-CCCCCEEEEEecCCc-ccHHHH-hcccc------CCCc--EE--E-E-ecCCcccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANT-PGVAAD-VGHIN------TRSE--VA--G-Y-MGNDQLGQ   92 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~-~~~~~el~L~D~~~~-~g~~~d-l~~~~------~~~~--v~--~-~-~~t~d~~~   92 (300)
                      +|||+|||+ |.+|..++..|+. .|+  +|.++|.... ...... +....      ....  +.  . . ..++|+++
T Consensus         2 ~mkI~ViGa-G~~G~~~a~~La~~~G~--~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (404)
T 3c7a_A            2 TVKVCVCGG-GNGAHTLSGLAASRDGV--EVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEI   78 (404)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSTTE--EEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHH
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCC--EEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHH
Confidence            479999996 9999999999987 476  8999993211 111111 11110      0001  11  0 0 02356767


Q ss_pred             ccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEE
Q 022263           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNM  143 (300)
Q Consensus        93 a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv  143 (300)
                      +++++|+||++....                ..+++++.+..+. |+.+++.
T Consensus        79 a~~~aD~Vilav~~~----------------~~~~v~~~l~~~l~~~~ivv~  114 (404)
T 3c7a_A           79 AISGADVVILTVPAF----------------AHEGYFQAMAPYVQDSALIVG  114 (404)
T ss_dssp             HHTTCSEEEECSCGG----------------GHHHHHHHHTTTCCTTCEEEE
T ss_pred             HhCCCCEEEEeCchH----------------HHHHHHHHHHhhCCCCcEEEE
Confidence            889999999986422                0245666666654 4665544

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.47  E-value=0.00023  Score=68.92  Aligned_cols=98  Identities=13%  Similarity=0.151  Sum_probs=62.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccc-c---CCCcEEEEecCCccccccC---CCCEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-N---TRSEVAGYMGNDQLGQALE---DSDVVI  101 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~-~---~~~~v~~~~~t~d~~~a~~---~aDiVI  101 (300)
                      |||+|||+ |.+|..++..|...|+  +|.++|+++.+..  ++... .   ....+..   +++++++++   ++|+||
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~~--~l~~~~g~~~~~~~i~~---~~~~~e~v~~l~~aDvVi   73 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSE--EFMKANASAPFAGNLKA---FETMEAFAASLKKPRKAL   73 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHH--HHHHHTTTSTTGGGEEE---CSCHHHHHHHBCSSCEEE
T ss_pred             CEEEEECh-HHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHhcCCCCCCCCeEE---ECCHHHHHhcccCCCEEE
Confidence            79999995 9999999999999887  8999998643222  22211 0   0112332   345656555   599999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCc
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (300)
                      ++...+               ..++++++.+..+. |+.++|..+|-..
T Consensus        74 laVp~~---------------~~v~~vl~~l~~~l~~g~iIId~sng~~  107 (478)
T 1pgj_A           74 ILVQAG---------------AATDSTIEQLKKVFEKGDILVDTGNAHF  107 (478)
T ss_dssp             ECCCCS---------------HHHHHHHHHHHHHCCTTCEEEECCCCCH
T ss_pred             EecCCh---------------HHHHHHHHHHHhhCCCCCEEEECCCCCh
Confidence            986321               11334445555543 5777777777653

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.46  E-value=0.00069  Score=58.76  Aligned_cols=116  Identities=14%  Similarity=0.147  Sum_probs=67.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEecC-Cc---ccccc------
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t-~d---~~~a~------   94 (300)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++...   ..+..+... +|   .++++      
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcc---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999887  899999864321  11222211   123322211 12   12222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCC
Q 022263           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus        95 -~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                       ...|+||.+||......   .+   ....+..|+.    ..+.+.+.+.+....+.+|++|..
T Consensus        80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~  143 (251)
T 1zk4_A           80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI  143 (251)
T ss_dssp             HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence             35899999999753211   11   1234556665    445555555544332667776643

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.45  E-value=0.0004  Score=67.28  Aligned_cols=98  Identities=15%  Similarity=0.163  Sum_probs=62.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhcc-ccCCCcEEEEecCCcccccc---CCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-INTRSEVAGYMGNDQLGQAL---EDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~-~~~~~~v~~~~~t~d~~~a~---~~aDiVIi~a  104 (300)
                      |||+|||+ |.+|..++..|...|+  +|.++|+++.+..  ++.. ......+..   ++++++++   +++|+||++.
T Consensus         3 m~IgvIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~~--~l~~~~~~g~gi~~---~~~~~e~v~~l~~aDvVilaV   74 (482)
T 2pgd_A            3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSKVD--DFLANEAKGTKVLG---AHSLEEMVSKLKKPRRIILLV   74 (482)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHHHH--HHHHTTTTTSSCEE---CSSHHHHHHHBCSSCEEEECS
T ss_pred             CeEEEECh-HHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHhccccCCCeEE---eCCHHHHHhhccCCCEEEEeC
Confidence            78999995 9999999999999887  8999998754322  2222 100012332   34665654   5999999986


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCc
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (300)
                      ..+               ..++++++.+..+. |+.++|..+|...
T Consensus        75 p~~---------------~~v~~vl~~l~~~l~~g~iII~~s~~~~  105 (482)
T 2pgd_A           75 KAG---------------QAVDNFIEKLVPLLDIGDIIIDGGNSEY  105 (482)
T ss_dssp             CTT---------------HHHHHHHHHHHHHCCTTCEEEECSCCCH
T ss_pred             CCh---------------HHHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence            321               12334444555544 5677777777653

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=97.45  E-value=0.001  Score=63.56  Aligned_cols=108  Identities=18%  Similarity=0.223  Sum_probs=67.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC----------------CCcEEEEecCCcc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQL   90 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~d~   90 (300)
                      ...|..|||. |.||..+|..|+..|+  +|+.+|+++.+-.  .|+....                ...++.   |+| 
T Consensus        10 ~~~~~~ViGl-GyvGlp~A~~La~~G~--~V~~~D~~~~kv~--~L~~g~~pi~epgl~~ll~~~~~~g~l~~---ttd-   80 (431)
T 3ojo_A           10 HGSKLTVVGL-GYIGLPTSIMFAKHGV--DVLGVDINQQTID--KLQNGQISIEEPGLQEVYEEVLSSGKLKV---STT-   80 (431)
T ss_dssp             --CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESS-
T ss_pred             cCCccEEEee-CHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHCCCCCcCCCCHHHHHHhhcccCceEE---eCc-
Confidence            3459999995 9999999999999998  9999999754222  2332110                112433   333 


Q ss_pred             ccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEe-cCCCcc
Q 022263           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNS  150 (300)
Q Consensus        91 ~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~  150 (300)
                         +++||+||++.+.|......+    .-++..+...++.|.++- |..++|.- |-|..+
T Consensus        81 ---~~~aDvvii~VpTp~~~~~~~----~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgt  135 (431)
T 3ojo_A           81 ---PEASDVFIIAVPTPNNDDQYR----SCDISLVMRALDSILPFLKKGNTIIVESTIAPKT  135 (431)
T ss_dssp             ---CCCCSEEEECCCCCBCSSSSC----BBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTH
T ss_pred             ---hhhCCEEEEEeCCCccccccC----CccHHHHHHHHHHHHHhCCCCCEEEEecCCChhH
Confidence               468999999998875432100    123455666667777664 45554443 455553

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.44  E-value=0.00031  Score=66.83  Aligned_cols=139  Identities=14%  Similarity=0.107  Sum_probs=83.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCC--ccccc-cCCCCEEEEc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND--QLGQA-LEDSDVVIIP  103 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~--d~~~a-~~~aDiVIi~  103 (300)
                      ..++|.|+|+ |.+|+.++..|...++  +++++|.++..-.  .+...... -+.+ ..+.  .++++ +++||+||++
T Consensus         3 ~~~~viIiG~-Gr~G~~va~~L~~~g~--~vvvId~d~~~v~--~~~~~g~~-vi~G-Dat~~~~L~~agi~~A~~viv~   75 (413)
T 3l9w_A            3 HGMRVIIAGF-GRFGQITGRLLLSSGV--KMVVLDHDPDHIE--TLRKFGMK-VFYG-DATRMDLLESAGAAKAEVLINA   75 (413)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCHHHHH--HHHHTTCC-CEES-CTTCHHHHHHTTTTTCSEEEEC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCHHHHH--HHHhCCCe-EEEc-CCCCHHHHHhcCCCccCEEEEC
Confidence            3468999996 9999999999999887  8999998754222  22222111 1111 1111  12233 7899999998


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec-CCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHH
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS-NPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK  182 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t-NP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~  182 (300)
                      .+.               -..-..++..+++.+|+..++.-+ |+-+      .+.++..|   -+.|+--+..-+.++-
T Consensus        76 ~~~---------------~~~n~~i~~~ar~~~p~~~Iiara~~~~~------~~~L~~~G---ad~Vi~~~~~~a~~la  131 (413)
T 3l9w_A           76 IDD---------------PQTNLQLTEMVKEHFPHLQIIARARDVDH------YIRLRQAG---VEKPERETFEGALKTG  131 (413)
T ss_dssp             CSS---------------HHHHHHHHHHHHHHCTTCEEEEEESSHHH------HHHHHHTT---CSSCEETTHHHHHHHH
T ss_pred             CCC---------------hHHHHHHHHHHHHhCCCCeEEEEECCHHH------HHHHHHCC---CCEEECccHHHHHHHH
Confidence            532               223344566677888986665544 4443      22345544   4556554444455555


Q ss_pred             HHHHHHcCCCCCce
Q 022263          183 TFYAGKANVNVAEV  196 (300)
Q Consensus       183 ~~la~~l~v~~~~V  196 (300)
                      ..+-..+|+++..+
T Consensus       132 ~~~L~~lg~~~~~~  145 (413)
T 3l9w_A          132 RLALESLGLGPYEA  145 (413)
T ss_dssp             HHHHHHTTCCHHHH
T ss_pred             HHHHHHcCCCHHHH
Confidence            55556677766553

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=97.42  E-value=6.8e-05  Score=67.44  Aligned_cols=105  Identities=19%  Similarity=0.203  Sum_probs=66.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHhC--CCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCccccccC--CCCEEEEcC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALE--DSDVVIIPA  104 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~--~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~~--~aDiVIi~a  104 (300)
                      ||.|+||+|++|++++..|...  +.  +|+.+|+......     ...   .+.. .....++.++++  ++|+||++|
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~-----~~~---~~~~D~~d~~~~~~~~~~~~~d~vih~a   70 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKK--NVIASDIVQRDTG-----GIK---FITLDVSNRDEIDRAVEKYSIDAIFHLA   70 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGG--GEEEEESSCCCCT-----TCC---EEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCC--EEEEecCCCcccc-----Cce---EEEecCCCHHHHHHHHhhcCCcEEEECC
Confidence            5899999999999999988876  55  7899987543211     000   1110 000012334565  899999999


Q ss_pred             CCCCCCC-CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          105 GVPRKPG-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       105 g~~~~~g-~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +...... .+..+.+..|+.....+++.+.+.... .+|.+|
T Consensus        71 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~S  111 (317)
T 3ajr_A           71 GILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVE-KVVIPS  111 (317)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             cccCCccccChHHHhhhhhHHHHHHHHHHHHcCCC-EEEEec
Confidence            8642111 123456678898899999998876544 344443

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.41  E-value=0.00026  Score=63.89  Aligned_cols=110  Identities=12%  Similarity=0.099  Sum_probs=68.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcccccc-CCCCEEEEcCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPAGV  106 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~-~~aDiVIi~ag~  106 (300)
                      +|||+|||+ |.+|..++..|...+.  +|.++|+++..-   ++............   .+..+++ +++|+||++.-.
T Consensus         2 ~mkI~iiGa-Ga~G~~~a~~L~~~g~--~V~~~~r~~~~~---~~~~~~g~~~~~~~---~~~~~~~~~~~D~vilavk~   72 (294)
T 3g17_A            2 SLSVAIIGP-GAVGTTIAYELQQSLP--HTTLIGRHAKTI---TYYTVPHAPAQDIV---VKGYEDVTNTFDVIIIAVKT   72 (294)
T ss_dssp             -CCEEEECC-SHHHHHHHHHHHHHCT--TCEEEESSCEEE---EEESSTTSCCEEEE---EEEGGGCCSCEEEEEECSCG
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeccCcE---EEEecCCeecccee---cCchHhcCCCCCEEEEeCCc
Confidence            379999996 9999999999998876  799999864211   11111111111221   1223555 899999998521


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                          .            -+.++++.++.+ .|+..++.+.|-.+...          . +|.+++++-
T Consensus        73 ----~------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~----------~-~~~~~v~~g  113 (294)
T 3g17_A           73 ----H------------QLDAVIPHLTYLAHEDTLIILAQNGYGQLE----------H-IPFKNVCQA  113 (294)
T ss_dssp             ----G------------GHHHHGGGHHHHEEEEEEEEECCSSCCCGG----------G-CCCSCEEEC
T ss_pred             ----c------------CHHHHHHHHHHhhCCCCEEEEeccCcccHh----------h-CCCCcEEEE
Confidence                1            123444445544 36788888999988421          1 677787753

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.40  E-value=0.00012  Score=65.42  Aligned_cols=77  Identities=23%  Similarity=0.190  Sum_probs=50.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc----cHHHHhccccCCCcEEEEecC----CccccccCCCCE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP----GVAADVGHINTRSEVAGYMGN----DQLGQALEDSDV   99 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~----g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aDi   99 (300)
                      ++||.|+||+|++|++++..|+..|.  +++.++++...    .....+..... ..+..+.+.    .++.++++++|+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~~~l~~-~~v~~v~~D~~d~~~l~~~~~~~d~   80 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKA-SGANIVHGSIDDHASLVEAVKNVDV   80 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHT-TTCEEECCCTTCHHHHHHHHHTCSE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--CEEEEECCcccccCHHHHHHHHHHHh-CCCEEEEeccCCHHHHHHHHcCCCE
Confidence            57899999999999999999999886  78888886421    11111111100 122222111    235567899999


Q ss_pred             EEEcCCCC
Q 022263          100 VIIPAGVP  107 (300)
Q Consensus       100 VIi~ag~~  107 (300)
                      ||++++..
T Consensus        81 vi~~a~~~   88 (308)
T 1qyc_A           81 VISTVGSL   88 (308)
T ss_dssp             EEECCCGG
T ss_pred             EEECCcch
Confidence            99998753

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.39  E-value=0.00014  Score=65.25  Aligned_cols=64  Identities=19%  Similarity=0.262  Sum_probs=47.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      |||+|||+ |.+|..++..|...++  +|.++|+++.+..  .+.+.    .++.   +++++++++++|+||++.
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~----g~~~---~~~~~~~~~~~Dvvi~~v   64 (296)
T 2gf2_A            1 MPVGFIGL-GNMGNPMAKNLMKHGY--PLIIYDVFPDACK--EFQDA----GEQV---VSSPADVAEKADRIITML   64 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHTTC--CEEEECSSTHHHH--HHHTT----TCEE---CSSHHHHHHHCSEEEECC
T ss_pred             CeEEEEec-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHc----CCee---cCCHHHHHhcCCEEEEeC
Confidence            68999995 9999999999998887  8999998654322  23321    1222   245667788999999985

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.37  E-value=0.00046  Score=66.71  Aligned_cols=98  Identities=12%  Similarity=0.130  Sum_probs=63.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCC---CCEEEEcC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED---SDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~---aDiVIi~a  104 (300)
                      ++||+|||+ |.+|..++..|...++  +|.++|+++.+..  ++........+..   ++++++++++   +|+||++.
T Consensus         5 ~~~IgvIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~--~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVilav   76 (474)
T 2iz1_A            5 QANFGVVGM-AVMGKNLALNVESRGY--TVAIYNRTTSKTE--EVFKEHQDKNLVF---TKTLEEFVGSLEKPRRIMLMV   76 (474)
T ss_dssp             TBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHH--HHHHHTTTSCEEE---CSSHHHHHHTBCSSCEEEECC
T ss_pred             CCcEEEEee-HHHHHHHHHHHHhCCC--EEEEEcCCHHHHH--HHHHhCcCCCeEE---eCCHHHHHhhccCCCEEEEEc
Confidence            368999995 9999999999999887  8999998653222  2222100012332   3466666555   99999986


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (300)
                      ..+               ..++++++.+.... |+.++|..+|..
T Consensus        77 p~~---------------~~v~~vl~~l~~~l~~g~iiId~s~~~  106 (474)
T 2iz1_A           77 QAG---------------AATDATIKSLLPLLDIGDILIDGGNTH  106 (474)
T ss_dssp             CTT---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             cCc---------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            321               12344455666554 567777777765

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=97.37  E-value=0.00028  Score=71.10  Aligned_cols=115  Identities=18%  Similarity=0.121  Sum_probs=71.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec--C--CccccccC--CCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG--N--DQLGQALE--DSD   98 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~--t--~d~~~a~~--~aD   98 (300)
                      ++++|.|+||+|++|++++..|+..+.  +|+++|+....  ....++..... ..+..+.+  +  .++.++++  ++|
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~~~D   86 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLTK-HHIPFYEVDLCDRKGLEKVFKEYKID   86 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHHT-SCCCEEECCTTCHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCcchHHHHHHHhhccC-CceEEEEcCCCCHHHHHHHHHhCCCC
Confidence            457999999999999999999999886  89999975421  11112221100 11222111  1  12334556  899


Q ss_pred             EEEEcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        99 iVIi~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +||++|+.....  .....+.+..|+.....+++.+++....- +|.+|
T Consensus        87 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~-iV~~S  134 (699)
T 1z45_A           87 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSK-FVFSS  134 (699)
T ss_dssp             EEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCE-EEEEE
T ss_pred             EEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEC
Confidence            999999864211  01223567789998999999888775443 44443

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.36  E-value=0.00052  Score=66.78  Aligned_cols=97  Identities=13%  Similarity=0.128  Sum_probs=64.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhcc-ccCCCcEEEEecCCccccccCC---CCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-INTRSEVAGYMGNDQLGQALED---SDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~-~~~~~~v~~~~~t~d~~~a~~~---aDiVIi~a  104 (300)
                      .+|+|||+ |.||..++..|+..|+  +|.++|+++.+..  ++.. ......+.   .++++++++++   +|+||++.
T Consensus        11 ~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~~~--~l~~~~~~~~gi~---~~~s~~e~v~~l~~aDvVil~V   82 (497)
T 2p4q_A           11 ADFGLIGL-AVMGQNLILNAADHGF--TVCAYNRTQSKVD--HFLANEAKGKSII---GATSIEDFISKLKRPRKVMLLV   82 (497)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSHHHH--HHHHTTTTTSSEE---CCSSHHHHHHTSCSSCEEEECC
T ss_pred             CCEEEEee-HHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHcccccCCCeE---EeCCHHHHHhcCCCCCEEEEEc
Confidence            58999995 9999999999999998  8999998764322  2322 10001233   24466666665   99999986


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (300)
                      ..+               ..++++++.+..+. |+.++|..+|-.
T Consensus        83 p~~---------------~~v~~vl~~l~~~l~~g~iIId~s~~~  112 (497)
T 2p4q_A           83 KAG---------------APVDALINQIVPLLEKGDIIIDGGNSH  112 (497)
T ss_dssp             CSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             CCh---------------HHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence            321               12445556666654 567887787754

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.35  E-value=0.00021  Score=64.47  Aligned_cols=73  Identities=18%  Similarity=0.233  Sum_probs=49.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc-ccH-HHHhccccCCCcEEEEecC----CccccccCCCCEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGV-AADVGHINTRSEVAGYMGN----DQLGQALEDSDVVII  102 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~-~g~-~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aDiVIi  102 (300)
                      +||.|+||+|++|++++..|+..+.  +|+.++++.. ... ..++...    .++.+.+.    .++.++++++|+||+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~l~~~----~v~~v~~Dl~d~~~l~~a~~~~d~vi~   85 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH--PTYVFTRPNSSKTTLLDEFQSL----GAIIVKGELDEHEKLVELMKKVDVVIS   85 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECTTCSCHHHHHHHHHT----TCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC--cEEEEECCCCchhhHHHHhhcC----CCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            3899999999999999999999886  7899988653 222 1122221    12222111    235678899999999


Q ss_pred             cCCCC
Q 022263          103 PAGVP  107 (300)
Q Consensus       103 ~ag~~  107 (300)
                      +++..
T Consensus        86 ~a~~~   90 (318)
T 2r6j_A           86 ALAFP   90 (318)
T ss_dssp             CCCGG
T ss_pred             CCchh
Confidence            98753

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.34  E-value=0.00051  Score=60.21  Aligned_cols=114  Identities=12%  Similarity=0.195  Sum_probs=69.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc---cccccC-------C
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQALE-------D   96 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~~-------~   96 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.......++....  ..+..+... +|   .+++++       +
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (255)
T 2q2v_A            4 GKTALVTGSTSGIGLGIAQVLARAGA--NIVLNGFGDPAPALAEIARHG--VKAVHHPADLSDVAQIEALFALAEREFGG   79 (255)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHHHTTS--CCEEEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHhcC--CceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            35799999999999999999999987  899999865422223333211  122222111 12   223333       8


Q ss_pred             CCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           97 SDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        97 aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .|++|..||......   .+   ....+..|+.    ..+.+.+.+++.. .+.+|++|.
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS  138 (255)
T 2q2v_A           80 VDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN-WGRIINIAS  138 (255)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcC
Confidence            999999999753211   11   1234555655    6667777776543 466666654

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.32  E-value=0.00017  Score=63.66  Aligned_cols=65  Identities=17%  Similarity=0.239  Sum_probs=45.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |||+|||+ |.+|..++..|...++  +|.++|..+......++....    +.     ++++++++++|+||++..
T Consensus         1 M~I~iIG~-G~mG~~la~~l~~~g~--~V~~~~~~~~~~~~~~~~~~g----~~-----~~~~~~~~~aDvvi~~v~   65 (264)
T 1i36_A            1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIERARTVG----VT-----ETSEEDVYSCPVVISAVT   65 (264)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHHHHHHHT----CE-----ECCHHHHHTSSEEEECSC
T ss_pred             CeEEEEec-hHHHHHHHHHHHHCCC--eEEEeCCccCHHHHHHHHHCC----Cc-----CCHHHHHhcCCEEEEECC
Confidence            69999995 9999999999998887  899987732222222333221    11     234577899999999863

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.31  E-value=0.00046  Score=59.64  Aligned_cols=116  Identities=16%  Similarity=0.123  Sum_probs=65.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC--CccccccC---CCCEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN--DQLGQALE---DSDVVI  101 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t--~d~~~a~~---~aDiVI  101 (300)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++.....  ++..............+  .+.+++++   ..|+||
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi   81 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLV--SLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLV   81 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEE
Confidence            346899999999999999999999887  8999998643211  11110001011111101  11223333   579999


Q ss_pred             EcCCCCCCCC---Cc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263          102 IPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       102 i~ag~~~~~g---~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .+||......   .+   ....+..|+.-    .+.+.+.+.+....+.+|++|.
T Consensus        82 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS  136 (244)
T 1cyd_A           82 NNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS  136 (244)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             ECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcc
Confidence            9999653211   11   12244455554    4444444444443566776664

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.30  E-value=0.0022  Score=55.90  Aligned_cols=116  Identities=20%  Similarity=0.244  Sum_probs=66.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Ccc----ccc-------cC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQL----GQA-------LE   95 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d~----~~a-------~~   95 (300)
                      .++|.|+||+|.+|.+++..|+..|. ..|++.|++.......++.+......+..+... +|.    +++       +.
T Consensus         5 ~k~vlVtGas~gIG~~~a~~l~~~G~-~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   83 (254)
T 1sby_A            5 NKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK   83 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhcC
Confidence            45899999999999999999999886 138999986532222333322111123322211 111    111       23


Q ss_pred             CCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHH----HHHHhhC--CCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLC----SAIAKYC--PNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~----~~i~~~~--p~a~viv~tN  146 (300)
                      +.|++|.+||...  .....+.+..|..-...+.    +.+.+..  +.+.+|++|.
T Consensus        84 ~id~lv~~Ag~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS  138 (254)
T 1sby_A           84 TVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS  138 (254)
T ss_dssp             CCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CCCEEEECCccCC--HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECc
Confidence            7899999999742  2233345556655444444    4443332  2567777764

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.29  E-value=0.001  Score=58.95  Aligned_cols=113  Identities=17%  Similarity=0.083  Sum_probs=67.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc---ccccc-------CC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQAL-------ED   96 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a~-------~~   96 (300)
                      +++|.|+||+|.+|.+++..|+..|.  +|++.|++.....  ++.... ...+..+.. -+|   .++++       .+
T Consensus         5 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~--~~~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   79 (281)
T 3m1a_A            5 AKVWLVTGASSGFGRAIAEAAVAAGD--TVIGTARRTEALD--DLVAAY-PDRAEAISLDVTDGERIDVVAADVLARYGR   79 (281)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGH--HHHHHC-TTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHhc-cCCceEEEeeCCCHHHHHHHHHHHHHhCCC
Confidence            45799999999999999999999987  8999998653222  111111 112222211 112   22222       37


Q ss_pred             CCEEEEcCCCCCCC---CCc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263           97 SDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        97 aDiVIi~ag~~~~~---g~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .|+||.+||.....   ..+   -...+..|+.-    .+.+.+.+++.. .+.+|++|.
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~~sS  138 (281)
T 3m1a_A           80 VDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG-SGSVVNISS  138 (281)
T ss_dssp             CSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEcC
Confidence            89999999974211   112   12345566655    677777776654 455666654

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.27  E-value=0.00022  Score=62.77  Aligned_cols=68  Identities=13%  Similarity=0.210  Sum_probs=47.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      .+|||+|||+ |.+|..++..|...+.  ++.++|+++.+..  ++.+..   .+..   +++++++++++|+||++..
T Consensus         2 ~~m~i~iiG~-G~mG~~~a~~l~~~g~--~v~~~~~~~~~~~--~~~~~~---g~~~---~~~~~~~~~~~D~Vi~~v~   69 (259)
T 2ahr_A            2 NAMKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLERSK--EIAEQL---ALPY---AMSHQDLIDQVDLVILGIK   69 (259)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHHHH--HHHHHH---TCCB---CSSHHHHHHTCSEEEECSC
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCHHHHH--HHHHHc---CCEe---eCCHHHHHhcCCEEEEEeC
Confidence            4689999995 9999999999988775  8999998653222  222110   1111   2456677889999999863

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.26  E-value=0.00065  Score=61.21  Aligned_cols=97  Identities=14%  Similarity=0.144  Sum_probs=61.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhC-----C-CCCEEEEEecCCcccHHHHhcc-ccC-----C-----CcEEEEecCCc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLN-----P-LVSRLALYDIANTPGVAADVGH-INT-----R-----SEVAGYMGNDQ   89 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~-----~-~~~el~L~D~~~~~g~~~dl~~-~~~-----~-----~~v~~~~~t~d   89 (300)
                      .+|||+|||+ |.+|..++..|.+.     + .  +|.++|+ +.  ....+.+ ...     .     ..+..   +++
T Consensus         7 ~~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~--~V~~~~r-~~--~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~   77 (317)
T 2qyt_A            7 QPIKIAVFGL-GGVGGYYGAMLALRAAATDGLL--EVSWIAR-GA--HLEAIRAAGGLRVVTPSRDFLARPTCV---TDN   77 (317)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHTTSSE--EEEEECC-HH--HHHHHHHHTSEEEECSSCEEEECCSEE---ESC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCccccCCCC--CEEEEEc-HH--HHHHHHhcCCeEEEeCCCCeEEecceE---ecC
Confidence            4589999995 99999999999887     6 6  8999987 32  2222322 110     0     01111   123


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCc
Q 022263           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN  149 (300)
Q Consensus        90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d  149 (300)
                      . ++++++|+||++....    .            +.++++.+..+ .|+.++|.++|..+
T Consensus        78 ~-~~~~~~D~vil~vk~~----~------------~~~v~~~i~~~l~~~~~iv~~~nG~~  121 (317)
T 2qyt_A           78 P-AEVGTVDYILFCTKDY----D------------MERGVAEIRPMIGQNTKILPLLNGAD  121 (317)
T ss_dssp             H-HHHCCEEEEEECCSSS----C------------HHHHHHHHGGGEEEEEEEEECSCSSS
T ss_pred             c-cccCCCCEEEEecCcc----c------------HHHHHHHHHhhcCCCCEEEEccCCCC
Confidence            3 4578999999986432    1            24455556554 35777777888876

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.25  E-value=0.0022  Score=56.42  Aligned_cols=114  Identities=21%  Similarity=0.187  Sum_probs=69.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEecC-Cc---ccccc-------C
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGN-DQ---LGQAL-------E   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t-~d---~~~a~-------~   95 (300)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++........+..+... +|   .++++       .
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (267)
T 2gdz_A            8 KVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   85 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999987  899999864321  12233221111123322211 12   12222       3


Q ss_pred             CCCEEEEcCCCCCCCCCcchhhhhhhHH----HHHHHHHHHHhhC--CCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRKPGMTRDDLFNINAG----IVKDLCSAIAKYC--PNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~dl~~~N~~----i~~~i~~~i~~~~--p~a~viv~tN  146 (300)
                      ..|++|..||...  .....+.+..|+.    ..+.+.+.+.+..  +.+.+|++|.
T Consensus        86 ~id~lv~~Ag~~~--~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS  140 (267)
T 2gdz_A           86 RLDILVNNAGVNN--EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS  140 (267)
T ss_dssp             CCCEEEECCCCCC--SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CCCEEEECCCCCC--hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCC
Confidence            5799999999753  1223345556654    5667777776653  2567777764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.24  E-value=0.0017  Score=51.74  Aligned_cols=112  Identities=13%  Similarity=0.160  Sum_probs=67.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc---cc-cccCCCCEEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LG-QALEDSDVVII  102 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~-~a~~~aDiVIi  102 (300)
                      ..+|.|+|+ |.+|..++..|...++  +++++|.++....  .+.+..    +..+.+. ++   ++ ..++++|+||+
T Consensus         7 ~~~viIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~~~--~~~~~g----~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (140)
T 3fwz_A            7 CNHALLVGY-GRVGSLLGEKLLASDI--PLVVIETSRTRVD--ELRERG----VRAVLGNAANEEIMQLAHLECAKWLIL   77 (140)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHHHH--HHHHTT----CEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCC--CEEEEECCHHHHH--HHHHcC----CCEEECCCCCHHHHHhcCcccCCEEEE
Confidence            358999996 9999999999999887  8999999754222  222211    1112121 12   11 13578999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC-CCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN-PVNSTVPIAAEVFKKAGTYNEKKLFG  172 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN-P~d~~~~i~~~~~~~~~~~~~~kviG  172 (300)
                      +.+..           ..|..    ++..+++.+|+..++.-.| |-+      .+.++..|   -+.++-
T Consensus        78 ~~~~~-----------~~n~~----~~~~a~~~~~~~~iiar~~~~~~------~~~l~~~G---~d~vi~  124 (140)
T 3fwz_A           78 TIPNG-----------YEAGE----IVASARAKNPDIEIIARAHYDDE------VAYITERG---ANQVVM  124 (140)
T ss_dssp             CCSCH-----------HHHHH----HHHHHHHHCSSSEEEEEESSHHH------HHHHHHTT---CSEEEE
T ss_pred             ECCCh-----------HHHHH----HHHHHHHHCCCCeEEEEECCHHH------HHHHHHCC---CCEEEC
Confidence            85421           23433    3445667788776655444 433      23455554   455554

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.23  E-value=0.0017  Score=56.91  Aligned_cols=78  Identities=15%  Similarity=0.141  Sum_probs=50.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCC---CCCEEEEEecCCcccH-HHHhccccCCCcEEEEec--C--CccccccC---
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNP---LVSRLALYDIANTPGV-AADVGHINTRSEVAGYMG--N--DQLGQALE---   95 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~---~~~el~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~--t--~d~~~a~~---   95 (300)
                      ++++|.|+||+|.+|.+++..|++.+   .  +|+++|++..... ..++....  ..+..+..  +  .+.+++++   
T Consensus        20 ~~k~vlITGasggIG~~la~~L~~~G~~~~--~V~~~~r~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~   95 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKNH--SNIHILEIDLRNFDAYDKLVADIE   95 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHHC--TTEEEEECCTTCGGGHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhcCCCCc--EEEEEecChhhhHHHHHhhccC--CceEEEEecCCChHHHHHHHHHHH
Confidence            45689999999999999999999988   5  8999998654322 22332211  12322211  1  12223333   


Q ss_pred             ------CCCEEEEcCCCCC
Q 022263           96 ------DSDVVIIPAGVPR  108 (300)
Q Consensus        96 ------~aDiVIi~ag~~~  108 (300)
                            ..|+||.+||...
T Consensus        96 ~~~g~~~id~li~~Ag~~~  114 (267)
T 1sny_A           96 GVTKDQGLNVLFNNAGIAP  114 (267)
T ss_dssp             HHHGGGCCSEEEECCCCCC
T ss_pred             HhcCCCCccEEEECCCcCC
Confidence                  7999999999754

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.23  E-value=0.00039  Score=64.47  Aligned_cols=90  Identities=17%  Similarity=0.222  Sum_probs=58.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC----CCCEEEEc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE----DSDVVIIP  103 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~----~aDiVIi~  103 (300)
                      .+||+|||+ |.+|.+++..|...|.  +|+++|.++....  .....    .+..   +.+++++++    ++|+||++
T Consensus         8 ~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~--~a~~~----G~~~---~~~~~e~~~~a~~~aDlVila   75 (341)
T 3ktd_A            8 SRPVCILGL-GLIGGSLLRDLHAANH--SVFGYNRSRSGAK--SAVDE----GFDV---SADLEATLQRAAAEDALIVLA   75 (341)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHH--HHHHT----TCCE---ESCHHHHHHHHHHTTCEEEEC
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHc----CCee---eCCHHHHHHhcccCCCEEEEe
Confidence            469999995 9999999999999886  8999998653211  11111    1111   134445554    57999998


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      .-                ...+.++.+.+..+.|+++++.++
T Consensus        76 vP----------------~~~~~~vl~~l~~~~~~~iv~Dv~  101 (341)
T 3ktd_A           76 VP----------------MTAIDSLLDAVHTHAPNNGFTDVV  101 (341)
T ss_dssp             SC----------------HHHHHHHHHHHHHHCTTCCEEECC
T ss_pred             CC----------------HHHHHHHHHHHHccCCCCEEEEcC
Confidence            52                122444555566666787766554

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.22  E-value=0.002  Score=55.67  Aligned_cols=115  Identities=19%  Similarity=0.251  Sum_probs=61.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEe-cCCccc--HHHHhccccCCCcEEEEecC-Cc---ccccc------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IANTPG--VAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D-~~~~~g--~~~dl~~~~~~~~v~~~~~t-~d---~~~a~------   94 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++| .++...  ...++....  ..+..+... +|   .++++      
T Consensus         5 ~~~vlItGasggiG~~~a~~l~~~G~--~V~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (247)
T 2hq1_A            5 GKTAIVTGSSRGLGKAIAWKLGNMGA--NIVLNGSPASTSLDATAEEFKAAG--INVVVAKGDVKNPEDVENMVKTAMDA   80 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECTTCSHHHHHHHHHHHTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCcCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999987  899884 433211  122232211  123322111 12   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC------CCcchhhhhhhHHHH----HHHHHHHHhhCCCeEEEEecCC
Q 022263           95 -EDSDVVIIPAGVPRKP------GMTRDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus        95 -~~aDiVIi~ag~~~~~------g~~r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  147 (300)
                       .+.|+||.+||.....      .....+.+..|+.-.    +.+.+.+.+. ..+.+|++|..
T Consensus        81 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~  143 (247)
T 2hq1_A           81 FGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQ-KSGKIINITSI  143 (247)
T ss_dssp             HSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHH-TCEEEEEECC-
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcCh
Confidence             3799999999875311      112334556666554    4444444433 34667766654

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.22  E-value=0.00059  Score=60.02  Aligned_cols=113  Identities=18%  Similarity=0.238  Sum_probs=68.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---ccccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQAL-------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a~-------   94 (300)
                      .+++.|+||+|.+|.+++..|++.|.  +|++.|++....  ...++..     .+..+.. -+|   .++++       
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   80 (259)
T 4e6p_A            8 GKSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEIGP-----AAYAVQMDVTRQDSIDAAIAATVEHA   80 (259)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----CceEEEeeCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999997  899999864321  2222211     1121111 112   22223       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCC
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                      .+.|++|..||......   .+   -.+.+..|+.    +.+...+.+.+..+.+.+|+++..
T Consensus        81 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  143 (259)
T 4e6p_A           81 GGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQ  143 (259)
T ss_dssp             SSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECCh
Confidence            38999999999753211   11   1223445543    455566666666556777777643

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.20  E-value=0.00048  Score=60.25  Aligned_cols=115  Identities=17%  Similarity=0.096  Sum_probs=70.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHh-CCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccccC-----
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQALE-----   95 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~-~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a~~-----   95 (300)
                      +++|.|+||+|.+|.+++..|+. .+.  +|++++++...  ....++.....  .+..+.. -+|   .+++++     
T Consensus         4 ~k~vlITGasggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            4 IHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhcCC--eeEEEECCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999 887  89999986422  12223332111  2222211 112   222233     


Q ss_pred             --CCCEEEEcCCCCCCCCC------cchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263           96 --DSDVVIIPAGVPRKPGM------TRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (300)
Q Consensus        96 --~aDiVIi~ag~~~~~g~------~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (300)
                        +.|+||.+||.......      .-...+..|+.-...+.+.+.++. +.+.+|++|.
T Consensus        80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS  139 (276)
T 1wma_A           80 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  139 (276)
T ss_dssp             HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             cCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence              78999999997533211      112346677777777777777653 2456766654

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.19  E-value=9.7e-05  Score=64.88  Aligned_cols=154  Identities=12%  Similarity=0.091  Sum_probs=83.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH----HHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV----AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~----~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.|++.....    ..|+.+..   .+...  ..+..+.+...|++|.+|
T Consensus        23 k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~d~~d~~---~v~~~--~~~~~~~~g~iD~li~~A   95 (251)
T 3orf_A           23 KNILVLGGSGALGAEVVKFFKSKSW--NTISIDFRENPNADHSFTIKDSGEE---EIKSV--IEKINSKSIKVDTFVCAA   95 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTTSSEEEECSCSSHH---HHHHH--HHHHHTTTCCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCcccccccceEEEeCCHH---HHHHH--HHHHHHHcCCCCEEEECC
Confidence            4789999999999999999999987  8999998653211    11111110   00000  001122345679999999


Q ss_pred             CCCCCC----CCc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeeh
Q 022263          105 GVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL  176 (300)
Q Consensus       105 g~~~~~----g~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~L  176 (300)
                      |.....    ..+   -...+..|+.-...+.+.+.+.- +.+.+|++|.....           .+ .+..-.++.+..
T Consensus        96 g~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-----------~~-~~~~~~Y~~sKa  163 (251)
T 3orf_A           96 GGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAAL-----------NR-TSGMIAYGATKA  163 (251)
T ss_dssp             CCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG-----------SC-CTTBHHHHHHHH
T ss_pred             ccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhc-----------cC-CCCCchhHHHHH
Confidence            964321    111   22345567766666666665543 25677777643321           01 222222222222


Q ss_pred             hHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          177 DVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       177 ds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                      --..+-..++++++..+..|++.++
T Consensus       164 a~~~~~~~la~e~~~~~~gi~v~~v  188 (251)
T 3orf_A          164 ATHHIIKDLASENGGLPAGSTSLGI  188 (251)
T ss_dssp             HHHHHHHHHTSTTSSSCTTCEEEEE
T ss_pred             HHHHHHHHHHHHhcccCCCcEEEEE
Confidence            2234455566665433566666555

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.19  E-value=0.0015  Score=59.85  Aligned_cols=134  Identities=18%  Similarity=0.214  Sum_probs=77.2

Q ss_pred             CCceEEEEcCCCChHHH-HHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcccccc--CCCCEEEEc
Q 022263           27 PDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL--EDSDVVIIP  103 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~-~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~--~~aDiVIi~  103 (300)
                      .++||.|||. |..|.+ +|..|...|.  +|..+|..........|.+.    .+..+.+ .+. +.+  .++|+||.+
T Consensus         3 ~~~~i~~iGi-Gg~Gms~~A~~L~~~G~--~V~~~D~~~~~~~~~~L~~~----gi~v~~g-~~~-~~l~~~~~d~vV~S   73 (326)
T 3eag_A            3 AMKHIHIIGI-GGTFMGGLAAIAKEAGF--EVSGCDAKMYPPMSTQLEAL----GIDVYEG-FDA-AQLDEFKADVYVIG   73 (326)
T ss_dssp             CCCEEEEESC-CSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHT----TCEEEES-CCG-GGGGSCCCSEEEEC
T ss_pred             CCcEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEcCCCCcHHHHHHHhC----CCEEECC-CCH-HHcCCCCCCEEEEC
Confidence            4679999996 999985 8889999998  99999986532222234432    2333333 233 334  589999999


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEe--cCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMI--SNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~--tNP~d~~~~i~~~~~~~~~~~~~~kviG  172 (300)
                      .|.+...- ......+.+++++.++ +.+.+. ..+..+|-+  ||==.+.+.+++++++..+ +++.-++|
T Consensus        74 pgi~~~~p-~~~~a~~~gi~v~~~~-e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g-~~~~~~~g  142 (326)
T 3eag_A           74 NVAKRGMD-VVEAILNLGLPYISGP-QWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAG-LAPGFLIG  142 (326)
T ss_dssp             TTCCTTCH-HHHHHHHTTCCEEEHH-HHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTT-CCCEEECS
T ss_pred             CCcCCCCH-HHHHHHHcCCcEEeHH-HHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcC-CCceEEec
Confidence            88863211 1112223445554432 222221 233344445  4443455667778888776 54433333

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.19  E-value=0.0011  Score=57.59  Aligned_cols=114  Identities=15%  Similarity=0.250  Sum_probs=65.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEecC-Cc---cccccC------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN-DQ---LGQALE------   95 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~~------   95 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++...  ....++....  ..+..+.+. +|   .+++++      
T Consensus        11 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   86 (255)
T 1fmc_A           11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999887  89999986432  1122332211  122222111 12   222333      


Q ss_pred             -CCCEEEEcCCCCCCC--CCc---chhhhhhhHHHH----HHHHHHHHhhCCCeEEEEecC
Q 022263           96 -DSDVVIIPAGVPRKP--GMT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 -~aDiVIi~ag~~~~~--g~~---r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tN  146 (300)
                       +.|+||.+||.....  ..+   ..+.+..|+.-.    +.+.+.+++.. .+.+|++|.
T Consensus        87 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS  146 (255)
T 1fmc_A           87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITS  146 (255)
T ss_dssp             SSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence             899999999875321  112   123445565544    44444444433 456666654

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.18  E-value=0.0016  Score=56.09  Aligned_cols=76  Identities=21%  Similarity=0.137  Sum_probs=49.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCC--CCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc---cccccC------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQALE------   95 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~--~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~~------   95 (300)
                      +++|.|+||+|.+|.+++..|++.+  .  +|+++|++......  +.+. ....+..+... +|   .+++++      
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~--~V~~~~r~~~~~~~--l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIR--HIIATARDVEKATE--LKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEIV   77 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCC--EEEEEESSGGGCHH--HHTC-CCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCc--EEEEEecCHHHHHH--HHhc-cCCceEEEEeecCCHHHHHHHHHHHHHhc
Confidence            4589999999999999999999988  6  89999986543321  2221 11123332211 12   223333      


Q ss_pred             ---CCCEEEEcCCCCC
Q 022263           96 ---DSDVVIIPAGVPR  108 (300)
Q Consensus        96 ---~aDiVIi~ag~~~  108 (300)
                         +.|+||.+||...
T Consensus        78 g~~~id~li~~Ag~~~   93 (250)
T 1yo6_A           78 GSDGLSLLINNAGVLL   93 (250)
T ss_dssp             GGGCCCEEEECCCCCC
T ss_pred             CCCCCcEEEECCcccC
Confidence               8999999998754

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.18  E-value=0.00026  Score=61.32  Aligned_cols=111  Identities=15%  Similarity=0.139  Sum_probs=64.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH------HHHhccccCCCcEEEEecCCcccccc--CCCCEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV------AADVGHINTRSEVAGYMGNDQLGQAL--EDSDVV  100 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~------~~dl~~~~~~~~v~~~~~t~d~~~a~--~~aDiV  100 (300)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.|++.....      ..|+.+..   .+...  -....+.+  .+.|++
T Consensus         4 k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~D~~~~~---~~~~~--~~~~~~~~~~g~id~l   76 (236)
T 1ooe_A            4 GKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQADSNILVDGNKNWTE---QEQSI--LEQTASSLQGSQVDGV   76 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTTSSEEEECCTTSCHHH---HHHHH--HHHHHHHHTTCCEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecCccccccccEEEeCCCCCHH---HHHHH--HHHHHHHhCCCCCCEE
Confidence            5799999999999999999999987  8999998653211      01111100   00000  00011112  478999


Q ss_pred             EEcCCCCCCC----CCc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263          101 IIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (300)
Q Consensus       101 Ii~ag~~~~~----g~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (300)
                      |.+||.....    ..+   ....+..|+.-...+.+.+.++- ..+.+|++|.
T Consensus        77 v~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  130 (236)
T 1ooe_A           77 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGA  130 (236)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECc
Confidence            9999964321    111   22345567666666666665542 2467777764

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.17  E-value=0.0016  Score=56.64  Aligned_cols=114  Identities=18%  Similarity=0.239  Sum_probs=65.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEecC-Cc---ccccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN-DQ---LGQAL-------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~-------   94 (300)
                      .++|.|+||+|.+|.+++..|++.|.  +|+++|++...  ....++....  ..+..+... +|   .++++       
T Consensus        13 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           13 NRVAIVTGGAQNIGLACVTALAEAGA--RVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQE   88 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999987  89999986432  1222332211  123322111 12   22223       


Q ss_pred             CCCCEEEEcCCCCC--CC--CCcc---hhhhhhhHHHHHHHHHH----HHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPR--KP--GMTR---DDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~--~~--g~~r---~dl~~~N~~i~~~i~~~----i~~~~p~a~viv~tN  146 (300)
                      .+.|+||++||...  .+  ..+.   .+.+..|+.-...+.+.    +.+. ..+.+++++.
T Consensus        89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~~sS  150 (260)
T 3awd_A           89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQ-KQGVIVAIGS  150 (260)
T ss_dssp             SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc-CCCEEEEEec
Confidence            37899999999653  11  1111   23445565544444444    4333 3466666654

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=97.15  E-value=0.0007  Score=59.59  Aligned_cols=114  Identities=21%  Similarity=0.220  Sum_probs=65.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-----HHHhccccCCCcEEEEecCCccccccCCCCEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----AADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-----~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      ..++|.|+||+|.+|..++..|+..|.  +|++.|++.....     ..|+.+..   .+...  -....+.+...|++|
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~Dl~d~~---~v~~~--~~~~~~~~g~iD~lv   92 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGD--KVAITYRSGEPPEGFLAVKCDITDTE---QVEQA--YKEIEETHGPVEVLI   92 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTSHH---HHHHH--HHHHHHHTCSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHhhccceEEEecCCCHH---HHHHH--HHHHHHHcCCCCEEE
Confidence            345799999999999999999999987  8999998643211     11111110   00000  001112244679999


Q ss_pred             EcCCCCCCC------CCcchhhhhhhHHHH----HHHHHHHHhhCCCeEEEEecCCC
Q 022263          102 IPAGVPRKP------GMTRDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPV  148 (300)
Q Consensus       102 i~ag~~~~~------g~~r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~  148 (300)
                      ..||.....      .+...+.+..|..-.    +.+.+.+.+. ..+.+|+++.-.
T Consensus        93 ~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~  148 (253)
T 2nm0_A           93 ANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRA-KKGRVVLISSVV  148 (253)
T ss_dssp             EECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECCCC
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEECchh
Confidence            999975321      112334455665544    4444455444 356677776543

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.14  E-value=0.0044  Score=54.30  Aligned_cols=116  Identities=9%  Similarity=0.107  Sum_probs=68.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc-------
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA-------   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------   93 (300)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|++...  ....++....  ..+..+.. -+|   .+++       
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDEK   80 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999987  89999986532  2223333221  12332211 112   1222       


Q ss_pred             cCCCCEEEEcCCCCCCCC---Ccc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +...|++|..||......   .+.   ...+..|+.    +.+...+.+.+....+.+|+++.
T Consensus        81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  143 (257)
T 3imf_A           81 FGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVA  143 (257)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECc
Confidence            237899999999643211   111   223445554    44555555555566677777754

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.13  E-value=0.0025  Score=56.14  Aligned_cols=116  Identities=20%  Similarity=0.231  Sum_probs=66.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---ccccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQAL-------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a~-------   94 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++........+..+.. -+|   .++++       
T Consensus        13 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           13 DRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999987  899999864321  1222322110112322211 112   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC----Cc---chhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG----MT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g----~~---r~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|..||.....+    .+   ....+..|+    ...+.+.+.+++.. .+.+|+++.
T Consensus        91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  152 (267)
T 1iy8_A           91 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTAS  152 (267)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcc
Confidence            37899999999753311    11   122344454    34556666666554 456666654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.12  E-value=0.0016  Score=55.82  Aligned_cols=69  Identities=17%  Similarity=0.177  Sum_probs=45.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc---ccc-ccCCCCEEEEc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQ-ALEDSDVVIIP  103 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~-a~~~aDiVIi~  103 (300)
                      |||.|+|+ |.+|+.++..|...++  +++++|.++....  ++.+..   ....+.+. ++   +++ .+++||+||++
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~~~--~l~~~~---~~~~i~gd~~~~~~l~~a~i~~ad~vi~~   72 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKY--GVVIINKDRELCE--EFAKKL---KATIIHGDGSHKEILRDAEVSKNDVVVIL   72 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTC--CEEEEESCHHHHH--HHHHHS---SSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHH--HHHHHc---CCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence            78999996 9999999999999887  8999998654322  222111   11111111 12   223 37899999998


Q ss_pred             CC
Q 022263          104 AG  105 (300)
Q Consensus       104 ag  105 (300)
                      .+
T Consensus        73 ~~   74 (218)
T 3l4b_C           73 TP   74 (218)
T ss_dssp             CS
T ss_pred             cC
Confidence            54

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.12  E-value=0.0028  Score=56.28  Aligned_cols=128  Identities=12%  Similarity=0.094  Sum_probs=73.4

Q ss_pred             ccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc--
Q 022263           15 PAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ--   89 (300)
Q Consensus        15 ~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d--   89 (300)
                      |...+.|.....+.+++.|+||+|.+|.+++..|+..|.  +|++.|++...  ....++.... ...+..+.. -+|  
T Consensus        14 ~~~~~~~~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~   90 (277)
T 4fc7_A           14 PAYRHLFCPDLLRDKVAFITGGGSGIGFRIAEIFMRHGC--HTVIASRSLPRVLTAARKLAGAT-GRRCLPLSMDVRAPP   90 (277)
T ss_dssp             SCCCCSBCTTTTTTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHH
T ss_pred             ccCCCCCCccccCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCHH
Confidence            455556666666667899999999999999999999987  89999986432  2222332211 112222211 112  


Q ss_pred             -cccc-------cCCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHHHHHHHH----HHhhCCCeEEEEecC
Q 022263           90 -LGQA-------LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (300)
Q Consensus        90 -~~~a-------~~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~----i~~~~p~a~viv~tN  146 (300)
                       .+++       +...|++|..||......   .+   -...+..|+.-...+.+.    +.+. ..+.||++|.
T Consensus        91 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS  164 (277)
T 4fc7_A           91 AVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRD-HGGVIVNITA  164 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH-HCEEEEEECC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECc
Confidence             1122       237899999999643211   11   122445555444444443    3333 3567777754

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.10  E-value=0.005  Score=54.28  Aligned_cols=114  Identities=16%  Similarity=0.215  Sum_probs=66.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEecC-Cc---ccccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGN-DQ---LGQAL-------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~t-~d---~~~a~-------   94 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++.....  ...+....  ..+..+... +|   .++++       
T Consensus        34 ~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~  109 (279)
T 3ctm_A           34 GKVASVTGSSGGIGWAVAEAYAQAGA--DVAIWYNSHPADEKAEHLQKTYG--VHSKAYKCNISDPKSVEETISQQEKDF  109 (279)
T ss_dssp             TCEEEETTTTSSHHHHHHHHHHHHTC--EEEEEESSSCCHHHHHHHHHHHC--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeecCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999887  8999998653221  11121111  122222111 12   22223       


Q ss_pred             CCCCEEEEcCCCCCC--C---CCcc---hhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRK--P---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~--~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|+||..||....  +   ..+.   ...+..|+.-    .+.+.+.+.+.. .+.+|++|.
T Consensus       110 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~isS  172 (279)
T 3ctm_A          110 GTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG-KGSLIITSS  172 (279)
T ss_dssp             SCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEECc
Confidence            348999999986532  1   1111   2234445544    567777776654 345555654

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=97.08  E-value=0.00076  Score=62.20  Aligned_cols=69  Identities=23%  Similarity=0.364  Sum_probs=50.3

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      .....++|+|||. |.+|..++..+...|.  +|..+|.+.......++       .+..    .++++.+++||+|+++
T Consensus       146 ~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~-------g~~~----~~l~~~l~~aDvVil~  211 (334)
T 2dbq_A          146 YDVYGKTIGIIGL-GRIGQAIAKRAKGFNM--RILYYSRTRKEEVEREL-------NAEF----KPLEDLLRESDFVVLA  211 (334)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHH-------CCEE----CCHHHHHHHCSEEEEC
T ss_pred             cCCCCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEECCCcchhhHhhc-------Cccc----CCHHHHHhhCCEEEEC
Confidence            3456789999995 9999999999998887  89999986643111111       1121    2566788999999998


Q ss_pred             CCC
Q 022263          104 AGV  106 (300)
Q Consensus       104 ag~  106 (300)
                      ...
T Consensus       212 vp~  214 (334)
T 2dbq_A          212 VPL  214 (334)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            643

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.07  E-value=0.0038  Score=56.22  Aligned_cols=115  Identities=18%  Similarity=0.207  Sum_probs=69.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---ccccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQAL-------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a~-------   94 (300)
                      .++|.|+||+|.+|.+++..|++.|.  +|++.|++...  ....++....  ..+..+.. -+|   .++++       
T Consensus        31 gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           31 GRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRLL  106 (301)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhC
Confidence            34799999999999999999999997  89999986532  2222333221  12222211 112   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|.+||......   .+   ....+..|+    .+.+.+.+.+.+..+.+.|+++|.
T Consensus       107 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS  168 (301)
T 3tjr_A          107 GGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTAS  168 (301)
T ss_dssp             SSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCc
Confidence            37899999999753211   11   122344444    455556666666665677777764

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.07  E-value=0.0013  Score=60.64  Aligned_cols=66  Identities=21%  Similarity=0.267  Sum_probs=46.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +.|||+|||+ |.+|.+++..|...++  +++++|.+.....  +.....   .+..   + ++++++++||+||++.
T Consensus        15 ~~~~I~IIG~-G~mG~alA~~L~~~G~--~V~~~~~~~~~~~--~~a~~~---G~~~---~-~~~e~~~~aDvVilav   80 (338)
T 1np3_A           15 QGKKVAIIGY-GSQGHAHACNLKDSGV--DVTVGLRSGSATV--AKAEAH---GLKV---A-DVKTAVAAADVVMILT   80 (338)
T ss_dssp             HTSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECCTTCHHH--HHHHHT---TCEE---E-CHHHHHHTCSEEEECS
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHHCcC--EEEEEECChHHHH--HHHHHC---CCEE---c-cHHHHHhcCCEEEEeC
Confidence            3579999995 9999999999999886  7999998653211  111111   1222   1 4557889999999985

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.07  E-value=0.00034  Score=60.83  Aligned_cols=111  Identities=14%  Similarity=0.148  Sum_probs=64.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccc-------c--CCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA-------L--EDSD   98 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a-------~--~~aD   98 (300)
                      .++|.|+||+|.+|.+++..|++.|.  +|++.|++......   ........+..   ..+.+++       +  .+.|
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~---~~~~~~~D~~~---~~~v~~~~~~~~~~~~~g~iD   78 (241)
T 1dhr_A            7 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEAS---ASVIVKMTDSF---TEQADQVTAEVGKLLGDQKVD   78 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSS---EEEECCCCSCH---HHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCChhhccC---CcEEEEcCCCC---HHHHHHHHHHHHHHhCCCCCC
Confidence            45899999999999999999999987  89999986532110   00000001100   0011111       2  4789


Q ss_pred             EEEEcCCCCCCC----CCc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263           99 VVIIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (300)
Q Consensus        99 iVIi~ag~~~~~----g~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (300)
                      ++|.+||.....    ..+   ....+..|+.-...+.+.+.++- ..+.+|++|.
T Consensus        79 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS  134 (241)
T 1dhr_A           79 AILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGA  134 (241)
T ss_dssp             EEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECC
Confidence            999999964321    111   12345567665555555555442 2467777764

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.07  E-value=0.0023  Score=56.94  Aligned_cols=127  Identities=17%  Similarity=0.301  Sum_probs=68.5

Q ss_pred             cccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEecC-Cc-
Q 022263           14 KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN-DQ-   89 (300)
Q Consensus        14 ~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t-~d-   89 (300)
                      +|.....+... .+.++|.|+||+|.+|..++..|++.+.  +|++++++...  ....++....  ..+..+... +| 
T Consensus        31 ~~~~~~~~~~~-l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~d~  105 (285)
T 2c07_A           31 SENKKENYYYC-GENKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKK  105 (285)
T ss_dssp             ----CCCCCCC-CSSCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCH
T ss_pred             Ccccccccccc-CCCCEEEEECCCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CceeEEECCCCCH
Confidence            44444333322 2346899999999999999999999886  89998875422  1222333211  123222111 12 


Q ss_pred             --cccc-------cCCCCEEEEcCCCCCCC---CCc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263           90 --LGQA-------LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        90 --~~~a-------~~~aDiVIi~ag~~~~~---g~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (300)
                        .+++       +.+.|+||.+||.....   ..+   ..+.+..|+.-    .+.+.+.+.+.. .+.+|++|.
T Consensus       106 ~~v~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS  180 (285)
T 2c07_A          106 EEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISS  180 (285)
T ss_dssp             HHHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence              1122       24789999999975321   111   22334455444    455555554443 456666654

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.07  E-value=0.0022  Score=55.99  Aligned_cols=73  Identities=23%  Similarity=0.285  Sum_probs=48.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEecC-Cc---cccccC------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGN-DQ---LGQALE------   95 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~t-~d---~~~a~~------   95 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.....  ..++.     ..+..+... +|   .+++++      
T Consensus        12 ~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (265)
T 2o23_A           12 GLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLG-----NNCVFAPADVTSEKDVQTALALAKGKF   84 (265)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcHhHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            45899999999999999999999987  8999998653222  12221     122222111 12   223333      


Q ss_pred             -CCCEEEEcCCCC
Q 022263           96 -DSDVVIIPAGVP  107 (300)
Q Consensus        96 -~aDiVIi~ag~~  107 (300)
                       ..|+||.+||..
T Consensus        85 g~id~li~~Ag~~   97 (265)
T 2o23_A           85 GRVDVAVNCAGIA   97 (265)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCccC
Confidence             899999999975

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=97.07  E-value=0.0008  Score=62.12  Aligned_cols=65  Identities=14%  Similarity=0.300  Sum_probs=48.5

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      .....++|+|||. |.+|+.+|..+...|.  +|..+|.......           ....   ..++++.+++||+|+++
T Consensus       160 ~~l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~dr~~~~~~-----------g~~~---~~~l~ell~~aDvVil~  222 (333)
T 3ba1_A          160 TKFSGKRVGIIGL-GRIGLAVAERAEAFDC--PISYFSRSKKPNT-----------NYTY---YGSVVELASNSDILVVA  222 (333)
T ss_dssp             CCCTTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSCCTTC-----------CSEE---ESCHHHHHHTCSEEEEC
T ss_pred             cccCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCchhcc-----------Ccee---cCCHHHHHhcCCEEEEe
Confidence            3456679999995 9999999999998887  8999998653211           1111   13567789999999998


Q ss_pred             CC
Q 022263          104 AG  105 (300)
Q Consensus       104 ag  105 (300)
                      ..
T Consensus       223 vP  224 (333)
T 3ba1_A          223 CP  224 (333)
T ss_dssp             SC
T ss_pred             cC
Confidence            63

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.06  E-value=0.0011  Score=57.18  Aligned_cols=116  Identities=17%  Similarity=0.121  Sum_probs=64.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC--Ccccccc---CCCCEEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN--DQLGQAL---EDSDVVII  102 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t--~d~~~a~---~~aDiVIi  102 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++..+..  ++.+............+  .+.++++   ...|+||.
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~   82 (244)
T 3d3w_A            7 GRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLD--SLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVN   82 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEE
Confidence            35899999999999999999999887  8999998643211  11110001011111101  1122233   35899999


Q ss_pred             cCCCCCCCC---Cc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecCC
Q 022263          103 PAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus       103 ~ag~~~~~g---~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                      +||......   .+   ....+..|+.-    .+...+.+.+....+.+|++|..
T Consensus        83 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~  137 (244)
T 3d3w_A           83 NAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQ  137 (244)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             CCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCch
Confidence            998753211   11   12344556554    44444444444435677777653

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.05  E-value=0.005  Score=54.07  Aligned_cols=115  Identities=18%  Similarity=0.247  Sum_probs=66.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEecC-Cc---ccccc------
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t-~d---~~~a~------   94 (300)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++...   ..+..+... +|   .++++      
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   89 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAK   89 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCChhHHHHHHHHhCCC---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  899998854221  11222211   123322111 12   22223      


Q ss_pred             -CCCCEEEEcCCCCCCC-----CCc---chhhhhhhHHHHHHHHHHHHhh---CCCeEEEEecC
Q 022263           95 -EDSDVVIIPAGVPRKP-----GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (300)
Q Consensus        95 -~~aDiVIi~ag~~~~~-----g~~---r~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (300)
                       .+.|+||..||.....     ..+   ..+.+..|..-...+.+.+.++   ...+.+|+++.
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  153 (278)
T 2bgk_A           90 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTAS  153 (278)
T ss_dssp             HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             cCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEee
Confidence             3799999999864321     111   2234555655444444444433   23566766654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.04  E-value=0.003  Score=50.90  Aligned_cols=101  Identities=10%  Similarity=0.070  Sum_probs=59.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC-cccHHHHhccccCCCcEEEEecC-Cc---cccc-cCCCCEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-LEDSDVVI  101 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~a-~~~aDiVI  101 (300)
                      ..+|.|+|+ |.+|+.++..|...+.  +++++|.+. .+..  .+.+... ..+..+.+. ++   ++++ ++++|.||
T Consensus         3 ~~~vlI~G~-G~vG~~la~~L~~~g~--~V~vid~~~~~~~~--~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            3 KDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIK--QLEQRLG-DNADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHH--HHHHHHC-TTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCChHHHH--HHHHhhc-CCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence            358999996 9999999999998887  899999863 2111  1111100 012222221 11   2333 89999999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEE-ecCCCc
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPVN  149 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv-~tNP~d  149 (300)
                      ++.+..           ..|..    ++...++.+|+..++. +.||..
T Consensus        77 ~~~~~d-----------~~n~~----~~~~a~~~~~~~~ii~~~~~~~~  110 (153)
T 1id1_A           77 ALSDND-----------ADNAF----VVLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             ECSSCH-----------HHHHH----HHHHHHHHTSSSCEEEECSSGGG
T ss_pred             EecCCh-----------HHHHH----HHHHHHHHCCCCEEEEEECCHHH
Confidence            985421           33433    3444556667655544 556655

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=97.04  E-value=0.0029  Score=58.50  Aligned_cols=91  Identities=22%  Similarity=0.334  Sum_probs=59.3

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      .+...++|+|||. |.+|+.+|..+...|.  +|..+|..+....           ....   ..++++.+++||+|+++
T Consensus       167 ~~l~gktiGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~-----------~~~~---~~sl~ell~~aDvVil~  229 (340)
T 4dgs_A          167 HSPKGKRIGVLGL-GQIGRALASRAEAFGM--SVRYWNRSTLSGV-----------DWIA---HQSPVDLARDSDVLAVC  229 (340)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCTTS-----------CCEE---CSSHHHHHHTCSEEEEC
T ss_pred             ccccCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCccccc-----------Ccee---cCCHHHHHhcCCEEEEe
Confidence            4456689999995 9999999999998887  8999998653210           1111   23677889999999998


Q ss_pred             CCCCCCCCCcchhhhhhhHHHH-HHHHHHHHhhCCCeEEEEec
Q 022263          104 AGVPRKPGMTRDDLFNINAGIV-KDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~-~~i~~~i~~~~p~a~viv~t  145 (300)
                      .-..  + .        +..++ ++   .+....|++++|+++
T Consensus       230 vP~t--~-~--------t~~li~~~---~l~~mk~gailIN~a  258 (340)
T 4dgs_A          230 VAAS--A-A--------TQNIVDAS---LLQALGPEGIVVNVA  258 (340)
T ss_dssp             C---------------------CHH---HHHHTTTTCEEEECS
T ss_pred             CCCC--H-H--------HHHHhhHH---HHhcCCCCCEEEECC
Confidence            5321  1 1        11112 22   233345789999885

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.04  E-value=0.0063  Score=54.10  Aligned_cols=115  Identities=16%  Similarity=0.184  Sum_probs=68.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---ccccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQAL-------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a~-------   94 (300)
                      .+++.|+||+|.+|.+++..|++.|.  +|++.|++....  ...++.....  .+..+.. -+|   .++.+       
T Consensus        32 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~d~~~v~~~~~~~~~~~  107 (276)
T 3r1i_A           32 GKRALITGASTGIGKKVALAYAEAGA--QVAVAARHSDALQVVADEIAGVGG--KALPIRCDVTQPDQVRGMLDQMTGEL  107 (276)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999987  899999865322  2233332211  1222111 112   22223       


Q ss_pred             CCCCEEEEcCCCCCCCC---Ccc---hhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|..||......   .+.   ...+..|+    .+.+.+.+.+.+....+.+|+++.
T Consensus       108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS  169 (276)
T 3r1i_A          108 GGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTAS  169 (276)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECc
Confidence            37999999999753221   111   22334454    345666666666655577777654

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.03  E-value=0.0052  Score=54.24  Aligned_cols=117  Identities=20%  Similarity=0.298  Sum_probs=67.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEecC-Cc---cccc-------
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t-~d---~~~a-------   93 (300)
                      ..++|.|+||+|.+|..++..|++.|.  +|+++|++...  ....++....  ..+..+..+ +|   .+++       
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~  105 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAE  105 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  89999986421  1122232211  123222111 12   1122       


Q ss_pred             cCCCCEEEEcCCCCCCCCC------cchhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecCCC
Q 022263           94 LEDSDVVIIPAGVPRKPGM------TRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g~------~r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~  148 (300)
                      +.+.|+||.+||.......      ...+.+..|+.-    .+.+.+.+.+. ..+.+|++|...
T Consensus       106 ~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS~~  169 (272)
T 1yb1_A          106 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASAA  169 (272)
T ss_dssp             TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC
T ss_pred             CCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEechh
Confidence            2478999999997532211      112344555544    44445554443 356677676543

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.03  E-value=0.0039  Score=53.90  Aligned_cols=114  Identities=18%  Similarity=0.207  Sum_probs=64.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEecC-Cc---cccccC-------
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGN-DQ---LGQALE-------   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t-~d---~~~a~~-------   95 (300)
                      ++|.|+||+|.+|.+++..|++.|.  +|+++|++....  ...++... ....+..+... +|   .+++++       
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGD--RVAALDLSAETLEETARTHWHA-YADKVLRVRADVADEGDVNAAIAATMEQFG   79 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHSTT-TGGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh-cCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999886  899999864221  11222111 11123322211 12   222333       


Q ss_pred             CCCEEEEcCCCCCCCC------Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRKPG------MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g------~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +.|+||.+||......      .+   ....+..|..    +.+.+.+.+.+.. .+.+|+++.
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS  142 (250)
T 2cfc_A           80 AIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG-AGVIVNIAS  142 (250)
T ss_dssp             CCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence            7999999998743211      11   1223444543    3355555555543 456666654

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.02  E-value=0.0031  Score=56.07  Aligned_cols=115  Identities=20%  Similarity=0.180  Sum_probs=69.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cHHHHhccccCCCcEEEEecC-Cc---cc-------cc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMGN-DQ---LG-------QA   93 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~t-~d---~~-------~a   93 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|.+...   ....++....  ..+..+... +|   .+       +.
T Consensus        29 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           29 GKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999987  89999986532   1122232211  122222111 11   11       12


Q ss_pred             cCCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tN  146 (300)
                      +...|++|..||......   .+   ....+..|+.-...+.+.+.++ ...+.+|+++.
T Consensus       105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  164 (283)
T 1g0o_A          105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  164 (283)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence            347899999999753211   11   2334566777666666666655 24566776654

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.01  E-value=0.0046  Score=53.87  Aligned_cols=115  Identities=15%  Similarity=0.233  Sum_probs=65.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec-CCccc--HHHHhccccCCCcEEEEecC-Cc---ccccc------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTPG--VAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~-~~~~g--~~~dl~~~~~~~~v~~~~~t-~d---~~~a~------   94 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|+ +....  ...++....  ..+..+... +|   .++.+      
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (261)
T 1gee_A            7 GKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999887  8999998 43211  122232211  122222111 12   22223      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 -~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                       .+.|+||.+||......   .+   ..+.+..|+.    +.+.+.+.+.+..+.+.+|++|.
T Consensus        83 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  145 (261)
T 1gee_A           83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS  145 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence             27899999999753211   11   1223444543    34455555555443566776654

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.01  E-value=0.0028  Score=55.31  Aligned_cols=35  Identities=23%  Similarity=0.345  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++.
T Consensus         7 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~   41 (264)
T 2pd6_A            7 SALALVTGAGSGIGRAVSVRLAGEGA--TVAACDLDR   41 (264)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            35899999999999999999999887  899999864

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.00  E-value=0.0042  Score=53.85  Aligned_cols=116  Identities=14%  Similarity=0.180  Sum_probs=65.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec-CCc---ccc---ccCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG-NDQ---LGQ---ALED   96 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-t~d---~~~---a~~~   96 (300)
                      .+.++|.|+||+|.+|.+++..|+..|.  +|++.|++.....  ..++..     .+..... -++   .++   .+.+
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~   84 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNALKD-----NYTIEVCNLANKEECSNLISKTSN   84 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCS-----SEEEEECCTTSHHHHHHHHHTCSC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhcc-----CccEEEcCCCCHHHHHHHHHhcCC
Confidence            3456899999999999999999999987  8999998643211  122221     1222111 111   112   2347


Q ss_pred             CCEEEEcCCCCCCC------CCcchhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263           97 SDVVIIPAGVPRKP------GMTRDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus        97 aDiVIi~ag~~~~~------g~~r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      .|++|..||.....      ..+-...+..|..    +.+...+.+.+. ..+.+|++|....
T Consensus        85 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~  146 (249)
T 3f9i_A           85 LDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK-RYGRIINISSIVG  146 (249)
T ss_dssp             CSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCCCC
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEccHHh
Confidence            89999999964311      1122334455544    444455555443 3567777765443

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.99  E-value=0.0051  Score=54.21  Aligned_cols=111  Identities=20%  Similarity=0.201  Sum_probs=62.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-----HHHHhccccCCCcEEEEecCCccccccCCCCEEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-----VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-----~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++...+     ...|+.+..   .+...  -....+.+.+.|++|.
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~Dl~~~~---~v~~~--~~~~~~~~g~iD~lv~   80 (264)
T 2dtx_A            8 DKVVIVTGASMGIGRAIAERFVDEGS--KVIDLSIHDPGEAKYDHIECDVTNPD---QVKAS--IDHIFKEYGSISVLVN   80 (264)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSCCCSCSSEEEECCTTCHH---HHHHH--HHHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEecCcccCCceEEEEecCCCHH---HHHHH--HHHHHHHcCCCCEEEE
Confidence            35799999999999999999999987  899999865321     011111110   00000  0001122347999999


Q ss_pred             cCCCCCCCC---Cc---chhhhhhhHHHH----HHHHHHHHhhCCCeEEEEecC
Q 022263          103 PAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       103 ~ag~~~~~g---~~---r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .||......   .+   ....+..|+.-.    +.+.+.+.+. ..+.||++|.
T Consensus        81 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS  133 (264)
T 2dtx_A           81 NAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRS-RDPSIVNISS  133 (264)
T ss_dssp             CCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS-SSCEEEEECC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEECC
Confidence            999753211   11   223445565544    4444444332 3456666654

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.98  E-value=0.0037  Score=55.74  Aligned_cols=118  Identities=11%  Similarity=0.077  Sum_probs=66.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEecC-Cc---cccc------
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGN-DQ---LGQA------   93 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t-~d---~~~a------   93 (300)
                      .+.++|.|+||+|.+|.+++..|++.|.  +|++.|++....  ...++.... ...+..+.+. +|   .+++      
T Consensus        24 l~~k~vlITGasggiG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~  100 (302)
T 1w6u_A           24 FQGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIK  100 (302)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCceEEEEeCCCCHHHHHHHHHHHHH
Confidence            3446899999999999999999999987  899999864221  122232210 1123322211 12   1122      


Q ss_pred             -cCCCCEEEEcCCCCCCC---CCc---chhhhhhhHHHHHHH----HHHHHhhCCCeEEEEecC
Q 022263           94 -LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDL----CSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        94 -~~~aDiVIi~ag~~~~~---g~~---r~dl~~~N~~i~~~i----~~~i~~~~p~a~viv~tN  146 (300)
                       +...|+||.+||.....   ..+   ....+..|+.-...+    .+.+.+....+.+|++|.
T Consensus       101 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  164 (302)
T 1w6u_A          101 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITT  164 (302)
T ss_dssp             HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence             23569999999964321   111   223445565544444    444443344567776654

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=96.98  E-value=0.00024  Score=59.73  Aligned_cols=110  Identities=17%  Similarity=0.168  Sum_probs=65.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEecCCccccccC---CCCEEEEc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALE---DSDVVIIP  103 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~t~d~~~a~~---~aDiVIi~  103 (300)
                      |+|.|+||+|.+|.+++..|+..    +|+++|++.....  ..++........+.   ...+.+++++   +.|+||.+
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~----~V~~~~r~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~id~vi~~   73 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH----DLLLSGRRAGALAELAREVGARALPADLA---DELEAKALLEEAGPLDLLVHA   73 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS----EEEEECSCHHHHHHHHHHHTCEECCCCTT---SHHHHHHHHHHHCSEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC----CEEEEECCHHHHHHHHHhccCcEEEeeCC---CHHHHHHHHHhcCCCCEEEEC
Confidence            47999999999999999998876    7999988543211  11121100000110   0012334444   89999999


Q ss_pred             CCCCCCC------CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          104 AGVPRKP------GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       104 ag~~~~~------g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ||.....      ..+....+..|..-...+.+.+.+ .+.+.+|++|.
T Consensus        74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~~iv~~sS  121 (207)
T 2yut_A           74 VGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARF-QKGARAVFFGA  121 (207)
T ss_dssp             CCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCE-EEEEEEEEECC
T ss_pred             CCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHh-cCCcEEEEEcC
Confidence            9875321      112334566787777777777633 23456666654

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.97  E-value=0.0023  Score=55.99  Aligned_cols=36  Identities=19%  Similarity=0.332  Sum_probs=31.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT   65 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~   65 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++..
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~   42 (257)
T 3tpc_A            7 SRVFIVTGASSGLGAAVTRMLAQEGA--TVLGLDLKPP   42 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChH
Confidence            34789999999999999999999997  8999998653

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.97  E-value=0.0012  Score=60.56  Aligned_cols=107  Identities=18%  Similarity=0.183  Sum_probs=66.7

Q ss_pred             cccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC
Q 022263           16 AGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE   95 (300)
Q Consensus        16 ~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~   95 (300)
                      .|.+. .......++|+|||. |.+|+.+|..+...|.  +|..||.......           .+..+.+..++++.++
T Consensus       128 ~W~~~-~~~~l~g~tvGIiG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~-----------~~~~~~~~~~l~ell~  192 (315)
T 3pp8_A          128 LWKPL-PEYTREEFSVGIMGA-GVLGAKVAESLQAWGF--PLRCWSRSRKSWP-----------GVESYVGREELRAFLN  192 (315)
T ss_dssp             CCCCC-CCCCSTTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSCCCCT-----------TCEEEESHHHHHHHHH
T ss_pred             ccCCC-CCCCcCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEcCCchhhh-----------hhhhhcccCCHHHHHh
Confidence            35443 223445679999995 9999999999998887  8999998543211           1111112246778899


Q ss_pred             CCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCcc
Q 022263           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNS  150 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d~  150 (300)
                      +||+|+++.-..  + ++| .++  |.       +.+....|++++|+++  .++|.
T Consensus       193 ~aDiV~l~~Plt--~-~t~-~li--~~-------~~l~~mk~gailIN~aRG~~vd~  236 (315)
T 3pp8_A          193 QTRVLINLLPNT--A-QTV-GII--NS-------ELLDQLPDGAYVLNLARGVHVQE  236 (315)
T ss_dssp             TCSEEEECCCCC--G-GGT-TCB--SH-------HHHTTSCTTEEEEECSCGGGBCH
T ss_pred             hCCEEEEecCCc--h-hhh-hhc--cH-------HHHhhCCCCCEEEECCCChhhhH
Confidence            999999985321  1 111 122  21       2234445799999985  34553

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=96.97  E-value=0.0031  Score=55.23  Aligned_cols=116  Identities=17%  Similarity=0.275  Sum_probs=66.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccccC------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQALE------   95 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a~~------   95 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|+++..  ....++........+..+.. -+|   .+++++      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (260)
T 2z1n_A            7 GKLAVVTAGSSGLGFASALELARNGA--RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG   84 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999987  89999986432  11222321100112222211 112   222333      


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHH----HHHHHHHHhhCCCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +.|++|..||......   .+   ....+..|..-.    +.+.+.+.+.. .+.+|++|.
T Consensus        85 gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  144 (260)
T 2z1n_A           85 GADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG-WGRMVYIGS  144 (260)
T ss_dssp             CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECc
Confidence            5999999999653211   11   123344555443    55666665543 456666654

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=96.01  E-value=0.00012  Score=62.63  Aligned_cols=65  Identities=17%  Similarity=0.179  Sum_probs=45.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ..|||+|||+ |.+|..++..|...+.  ++.++|+++. .  ..+...    .+..   + +..++++++|+||++.-
T Consensus        18 ~~~~I~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~-~--~~~~~~----g~~~---~-~~~~~~~~aDvVilav~   82 (201)
T 2yjz_A           18 KQGVVCIFGT-GDFGKSLGLKMLQCGY--SVVFGSRNPQ-V--SSLLPR----GAEV---L-CYSEAASRSDVIVLAVH   82 (201)
Confidence            4579999995 9999999999988776  7999987543 1  112111    1221   2 44577899999999853

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=96.95  E-value=0.0026  Score=54.65  Aligned_cols=78  Identities=23%  Similarity=0.217  Sum_probs=49.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEec-CCc---cccccC------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQ---LGQALE------   95 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a~~------   95 (300)
                      ++++.|+||+|.+|.+++..|+..|.  +|++.|++..  +....++.... ...+..+.. -+|   .+++++      
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQ-GVEVFYHHLDVSKAESVEEFSKKVLERF   78 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence            45789999999999999999999997  8999998643  22222332111 112222211 112   222333      


Q ss_pred             -CCCEEEEcCCCCC
Q 022263           96 -DSDVVIIPAGVPR  108 (300)
Q Consensus        96 -~aDiVIi~ag~~~  108 (300)
                       ..|++|..||...
T Consensus        79 g~id~li~~Ag~~~   92 (235)
T 3l77_A           79 GDVDVVVANAGLGY   92 (235)
T ss_dssp             SSCSEEEECCCCCC
T ss_pred             CCCCEEEECCcccc
Confidence             7899999999753

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.95  E-value=0.0031  Score=56.00  Aligned_cols=116  Identities=14%  Similarity=0.074  Sum_probs=64.9

Q ss_pred             CceEEEEcCCCC--hHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc---cc-------ccc
Q 022263           28 DRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LG-------QAL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~--VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~-------~a~   94 (300)
                      .++|.|+||+|+  +|..++..|+..|.  +|++.|++.......++.....  .+..+.. -+|   .+       +.+
T Consensus        26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (280)
T 3nrc_A           26 GKKILITGLLSNKSIAYGIAKAMHREGA--ELAFTYVGQFKDRVEKLCAEFN--PAAVLPCDVISDQEIKDLFVELGKVW  101 (280)
T ss_dssp             TCEEEECCCCSTTCHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHGGGC--CSEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHcCC--EEEEeeCchHHHHHHHHHHhcC--CceEEEeecCCHHHHHHHHHHHHHHc
Confidence            358999999877  99999999999987  8999998763223333332211  1111111 112   11       123


Q ss_pred             CCCCEEEEcCCCCCCC---C-----Cc---chhhhhhhHHHHHHHHHHHHhh--CCCeEEEEecCC
Q 022263           95 EDSDVVIIPAGVPRKP---G-----MT---RDDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNP  147 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g-----~~---r~dl~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP  147 (300)
                      ...|++|..||.....   +     .+   -.+.+..|..-...+.+.+..+  ...+.+|+++..
T Consensus       102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~  167 (280)
T 3nrc_A          102 DGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYI  167 (280)
T ss_dssp             SSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECG
T ss_pred             CCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecc
Confidence            4679999999975321   1     11   1223445554444444443332  125667776643

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.95  E-value=0.0039  Score=54.75  Aligned_cols=115  Identities=22%  Similarity=0.221  Sum_probs=65.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCcc---cc-------ccC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQL---GQ-------ALE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d~---~~-------a~~   95 (300)
                      ++|.|+||+|.+|.+++..|++.|.  +|++.|++...  ....++....  ..+..+.. -+|.   ++       .+.
T Consensus        30 k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g  105 (262)
T 3rkr_A           30 QVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAAHG  105 (262)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            5799999999999999999999987  89999986532  2222332221  12322211 1121   11       224


Q ss_pred             CCCEEEEcCCCCCCCC----Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCCC
Q 022263           96 DSDVVIIPAGVPRKPG----MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g----~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~  148 (300)
                      ..|++|.+||.....+    .+   -.+.+..|+.    +.+.+.+.+.+. ..+.||++|...
T Consensus       106 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~  168 (262)
T 3rkr_A          106 RCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAA-KRGHIINISSLA  168 (262)
T ss_dssp             CCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCEEEEECSSC
T ss_pred             CCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCceEEEEechh
Confidence            6899999999732222    11   1223444544    344444445443 456666666433

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.95  E-value=0.0015  Score=57.07  Aligned_cols=110  Identities=18%  Similarity=0.258  Sum_probs=65.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEe-cCCccc---cccCCCCEEE
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLG---QALEDSDVVI  101 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~~---~a~~~aDiVI  101 (300)
                      .+.++|.|+||+|.+|.+++..|+..|.  +|++.|+++.  ...++.      .+..+. ...+.+   +.+.+.|++|
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~--~~~~~~------~~~~~~D~~~~~~~~~~~~~~iD~lv   86 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEE--LLKRSG------HRYVVCDLRKDLDLLFEKVKEVDILV   86 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHTC------SEEEECCTTTCHHHHHHHSCCCSEEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHH--HHHhhC------CeEEEeeHHHHHHHHHHHhcCCCEEE
Confidence            3456899999999999999999999987  8999998641  111221      111110 011222   2344899999


Q ss_pred             EcCCCCCCCC---Cc---chhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263          102 IPAGVPRKPG---MT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       102 i~ag~~~~~g---~~---r~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ..||......   .+   ....+..|.    .+.+.+.+.+.+.. .+.+|++|.
T Consensus        87 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  140 (249)
T 1o5i_A           87 LNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITS  140 (249)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcc
Confidence            9999753211   11   122334443    33556666666554 456666654

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.94  E-value=0.001  Score=57.18  Aligned_cols=34  Identities=32%  Similarity=0.556  Sum_probs=30.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ++|.|+||+|.+|.+++..|++.|.  +|+++|++.
T Consensus         3 k~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~   36 (242)
T 1uay_A            3 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRR   36 (242)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEccCc
Confidence            5799999999999999999999887  899999865

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=96.94  E-value=0.0032  Score=54.32  Aligned_cols=116  Identities=17%  Similarity=0.170  Sum_probs=64.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecCCccc--HHHHhccccCCCcEEEEecC-Cc---ccccc---
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIANTPG--VAADVGHINTRSEVAGYMGN-DQ---LGQAL---   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t-~d---~~~a~---   94 (300)
                      ++|.|+||+|.+|.+++..|+..+...     +|++.|++....  ...++...  ...+..+... +|   .++++   
T Consensus         3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc--CCeeeEEEecCCCHHHHHHHHHHH
Confidence            579999999999999999999877522     789998864321  12223211  1123322211 12   12222   


Q ss_pred             ----CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHH----HHHHHHHHhhCCCeEEEEecCC
Q 022263           95 ----EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus        95 ----~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  147 (300)
                          .+.|+||.+||......   .+   ....+..|..-.    +.+.+.+.+. ..+.+|++|..
T Consensus        81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS~  146 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITSV  146 (244)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEEecc
Confidence                37999999999753211   11   222344454443    4444444443 35667767643

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=96.93  E-value=0.0044  Score=54.13  Aligned_cols=114  Identities=22%  Similarity=0.292  Sum_probs=66.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---ccccc-------C
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQAL-------E   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a~-------~   95 (300)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++....  ..+..+.. -+|   .++++       .
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            3689999999999999999999987  899999864321  122332211  12222211 112   22223       3


Q ss_pred             CCCEEEEcCCCCCCCC---Ccc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ..|++|..||......   .+.   ...+..|+.    +.+.+.+.+.+..+.+.+|+++.
T Consensus        79 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  139 (256)
T 1geg_A           79 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACS  139 (256)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence            8999999999743211   111   223444543    45666666665543567777654

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.93  E-value=0.00073  Score=62.90  Aligned_cols=99  Identities=18%  Similarity=0.182  Sum_probs=58.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCC-----CCCEEEEEecCCcccHHHHhccccCC--CcEEEEecCCccccccCCCCE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNP-----LVSRLALYDIANTPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDV   99 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~-----~~~el~L~D~~~~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~~aDi   99 (300)
                      .|+||+|+||+|.+|..+...|..++     .+ |++++...+..++..+-.+..+.  ..+....  .+ .++++++|+
T Consensus         8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~-ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~--~~-~~~~~~~Dv   83 (352)
T 2nqt_A            8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRL-RIGALTAATSAGSTLGEHHPHLTPLAHRVVEP--TE-AAVLGGHDA   83 (352)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSE-EEEEEEESSCTTSBGGGTCTTCGGGTTCBCEE--CC-HHHHTTCSE
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccE-EEEEEECCCcCCCchhhhcccccccceeeecc--CC-HHHhcCCCE
Confidence            35799999999999999999888876     33 67777543322322221111110  1111111  12 245789999


Q ss_pred             EEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 022263          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (300)
Q Consensus       100 VIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (300)
                      ||++.|...                .+++++.+ +.  .+++|..|+|.
T Consensus        84 Vf~alg~~~----------------s~~~~~~~-~~--G~~vIDlSa~~  113 (352)
T 2nqt_A           84 VFLALPHGH----------------SAVLAQQL-SP--ETLIIDCGADF  113 (352)
T ss_dssp             EEECCTTSC----------------CHHHHHHS-CT--TSEEEECSSTT
T ss_pred             EEECCCCcc----------------hHHHHHHH-hC--CCEEEEECCCc
Confidence            999876421                24455555 33  46777778775

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.93  E-value=0.005  Score=53.85  Aligned_cols=110  Identities=18%  Similarity=0.202  Sum_probs=63.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HHHhccccCCCcEEEEecCCc---cccc-------cCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGHINTRSEVAGYMGNDQ---LGQA-------LED   96 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~t~d---~~~a-------~~~   96 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++..... ..++.. .   .+..  .-+|   .+++       +..
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-~---~~~~--D~~~~~~~~~~~~~~~~~~g~   77 (256)
T 2d1y_A            6 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGG-A---FFQV--DLEDERERVRFVEEAAYALGR   77 (256)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTC-E---EEEC--CTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHhhC-C---EEEe--eCCCHHHHHHHHHHHHHHcCC
Confidence            35799999999999999999999987  8999998654311 112210 0   1110  0011   1122       347


Q ss_pred             CCEEEEcCCCCCCC---CCc---chhhhhhhHHHHHHH----HHHHHhhCCCeEEEEecC
Q 022263           97 SDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDL----CSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        97 aDiVIi~ag~~~~~---g~~---r~dl~~~N~~i~~~i----~~~i~~~~p~a~viv~tN  146 (300)
                      .|++|..||.....   ..+   ..+.+..|+.-...+    .+.+++. ..+.+|++|.
T Consensus        78 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS  136 (256)
T 2d1y_A           78 VDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV-GGGAIVNVAS  136 (256)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence            89999999975321   111   123455565544444    4444433 3466777654

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.93  E-value=0.004  Score=54.87  Aligned_cols=158  Identities=12%  Similarity=0.106  Sum_probs=85.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCcc------ccccCCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQL------GQALEDSD   98 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d~------~~a~~~aD   98 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++...  ....++........+..+.. -+|.      .+.+...|
T Consensus        10 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A           10 GKTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            35799999999999999999999987  89999986532  22223332211112222211 1121      12345899


Q ss_pred             EEEEcCCCCCCCC---Ccc---hhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022263           99 VVIIPAGVPRKPG---MTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (300)
Q Consensus        99 iVIi~ag~~~~~g---~~r---~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~  168 (300)
                      ++|..||......   .+.   .+.+..|+.-    .+.+.+.+.+. ..+.+|+++.....           .+ .+..
T Consensus        88 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~-----------~~-~~~~  154 (267)
T 3t4x_A           88 ILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER-KEGRVIFIASEAAI-----------MP-SQEM  154 (267)
T ss_dssp             EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TEEEEEEECCGGGT-----------SC-CTTC
T ss_pred             EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEEcchhhc-----------cC-CCcc
Confidence            9999999753221   111   2234555544    55556665543 45667766543221           01 2222


Q ss_pred             cEEEeeehhHHHHHHHHHHHcCCCCCceEEEEEe
Q 022263          169 KLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (300)
Q Consensus       169 kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G  202 (300)
                      -.++.+..--..+.+.+|.+++  +..|++..+.
T Consensus       155 ~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v~  186 (267)
T 3t4x_A          155 AHYSATKTMQLSLSRSLAELTT--GTNVTVNTIM  186 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT--TSEEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHhC--CCCeEEEEEe
Confidence            2222222222345666777764  5566655553

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.93  E-value=0.0029  Score=54.80  Aligned_cols=114  Identities=16%  Similarity=0.171  Sum_probs=65.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---ccc-------cc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQ-------AL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~-------a~   94 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++....  ..+..+.. -+|   .++       .+
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            5 EKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAEN   80 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  899999865321  222232221  12222211 112   111       12


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|.+||......   .+   ....+..|..-    .+...+.+.+. +.+.+|+++.
T Consensus        81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS  141 (247)
T 3lyl_A           81 LAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKK-RWGRIISIGS  141 (247)
T ss_dssp             CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEcc
Confidence            36799999999753221   11   12334455443    44444445444 3466776664

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.92  E-value=0.0017  Score=59.09  Aligned_cols=97  Identities=24%  Similarity=0.271  Sum_probs=62.3

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEE
Q 022263           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        23 ~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      ......++|+|||. |.+|..++..+...|.  +|..+|.......+.++       .+..    .++++.+++||+|++
T Consensus       137 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~-------g~~~----~~l~ell~~aDvV~l  202 (307)
T 1wwk_A          137 GIELEGKTIGIIGF-GRIGYQVAKIANALGM--NILLYDPYPNEERAKEV-------NGKF----VDLETLLKESDVVTI  202 (307)
T ss_dssp             BCCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHT-------TCEE----CCHHHHHHHCSEEEE
T ss_pred             CcccCCceEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHhhc-------Cccc----cCHHHHHhhCCEEEE
Confidence            34556779999995 9999999999988886  89999986543222111       1221    145678899999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +....  +. ++ .++  |    .+.   +....|++++|+++-
T Consensus       203 ~~p~~--~~-t~-~li--~----~~~---l~~mk~ga~lin~ar  233 (307)
T 1wwk_A          203 HVPLV--ES-TY-HLI--N----EER---LKLMKKTAILINTSR  233 (307)
T ss_dssp             CCCCS--TT-TT-TCB--C----HHH---HHHSCTTCEEEECSC
T ss_pred             ecCCC--hH-Hh-hhc--C----HHH---HhcCCCCeEEEECCC
Confidence            86321  11 11 122  2    122   333457899988853

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=96.92  E-value=0.0031  Score=58.97  Aligned_cols=70  Identities=19%  Similarity=0.327  Sum_probs=45.5

Q ss_pred             ceEEEEcCCCChHHHHHH-HHHhCCC-CCEEEEEecCCcccHH-HHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLAL-LMKLNPL-VSRLALYDIANTPGVA-ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~-~L~~~~~-~~el~L~D~~~~~g~~-~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |||+|+||+|.+|..+.. .|.++++ ..++.++.... .|+. .++...  ...+..   .++. +.++++|+||++.|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~~~~---~~~~-~~~~~~Dvvf~a~~   73 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKD--AGMLHD---AFDI-ESLKQLDAVITCQG   73 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSC--CCBCEE---TTCH-HHHTTCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCC--ceEEEe---cCCh-hHhccCCEEEECCC
Confidence            699999999999999998 7887774 34888886544 3331 122211  112221   1232 45789999999866

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.92  E-value=0.0012  Score=60.40  Aligned_cols=102  Identities=19%  Similarity=0.324  Sum_probs=64.4

Q ss_pred             CCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEE
Q 022263           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (300)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiV  100 (300)
                      +.......++|+|||. |.+|..++..+...|.  +|+.+|.......+.++       .+..    .++++.+++||+|
T Consensus       135 ~~~~~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~-------g~~~----~~l~ell~~aDvV  200 (313)
T 2ekl_A          135 IEGLELAGKTIGIVGF-GRIGTKVGIIANAMGM--KVLAYDILDIREKAEKI-------NAKA----VSLEELLKNSDVI  200 (313)
T ss_dssp             CCCCCCTTCEEEEESC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHT-------TCEE----CCHHHHHHHCSEE
T ss_pred             CCCCCCCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCCcchhHHHhc-------Ccee----cCHHHHHhhCCEE
Confidence            3344556789999995 9999999999998887  89999986543221111       1121    1456788999999


Q ss_pred             EEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC--CCc
Q 022263          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--PVN  149 (300)
Q Consensus       101 Ii~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN--P~d  149 (300)
                      +++....  +. ++ .++  |    .+.   +....|++++|+++-  ++|
T Consensus       201 vl~~P~~--~~-t~-~li--~----~~~---l~~mk~ga~lIn~arg~~vd  238 (313)
T 2ekl_A          201 SLHVTVS--KD-AK-PII--D----YPQ---FELMKDNVIIVNTSRAVAVN  238 (313)
T ss_dssp             EECCCCC--TT-SC-CSB--C----HHH---HHHSCTTEEEEESSCGGGBC
T ss_pred             EEeccCC--hH-HH-Hhh--C----HHH---HhcCCCCCEEEECCCCcccC
Confidence            9985322  11 11 122  1    122   233457889888753  444

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.92  E-value=0.0022  Score=58.93  Aligned_cols=69  Identities=17%  Similarity=0.233  Sum_probs=49.3

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      .....++|+|||. |.+|+.++..+...|.  +|..+|.+......  ....    .+..   . ++++.+++||+|+++
T Consensus       151 ~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~--~~~~----g~~~---~-~l~e~l~~aDvVi~~  217 (330)
T 2gcg_A          151 YGLTQSTVGIIGL-GRIGQAIARRLKPFGV--QRFLYTGRQPRPEE--AAEF----QAEF---V-STPELAAQSDFIVVA  217 (330)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHGGGTC--CEEEEESSSCCHHH--HHTT----TCEE---C-CHHHHHHHCSEEEEC
T ss_pred             cCCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcchhH--HHhc----Ccee---C-CHHHHHhhCCEEEEe
Confidence            3456689999995 9999999999988787  89999986532221  1111    1221   2 556778999999998


Q ss_pred             CC
Q 022263          104 AG  105 (300)
Q Consensus       104 ag  105 (300)
                      ..
T Consensus       218 vp  219 (330)
T 2gcg_A          218 CS  219 (330)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=96.91  E-value=0.002  Score=58.70  Aligned_cols=91  Identities=19%  Similarity=0.230  Sum_probs=60.2

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ....++|+|||. |.+|..+|..+...|.  +|..+|.....    +  . .    .    ...++++.++.||+|+++.
T Consensus       121 ~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~dr~~~~----~--~-~----~----~~~~l~ell~~aDvV~l~~  182 (303)
T 1qp8_A          121 LIQGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPKE----G--P-W----R----FTNSLEEALREARAAVCAL  182 (303)
T ss_dssp             CCTTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCCC----S--S-S----C----CBSCSHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCccc----c--C-c----c----cCCCHHHHHhhCCEEEEeC
Confidence            456679999995 9999999999988887  89999985431    1  1 0    0    1135668899999999986


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...  + .++ .++  |    .   +.+....|++++|+++.
T Consensus       183 P~~--~-~t~-~~i--~----~---~~l~~mk~gailin~sr  211 (303)
T 1qp8_A          183 PLN--K-HTR-GLV--K----Y---QHLALMAEDAVFVNVGR  211 (303)
T ss_dssp             CCS--T-TTT-TCB--C----H---HHHTTSCTTCEEEECSC
T ss_pred             cCc--h-HHH-HHh--C----H---HHHhhCCCCCEEEECCC
Confidence            322  1 111 122  1    1   22334457899998853

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=96.91  E-value=0.0044  Score=54.40  Aligned_cols=114  Identities=19%  Similarity=0.225  Sum_probs=65.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCcc---cc-------cc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQL---GQ-------AL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d~---~~-------a~   94 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++...  ....++....  ..+..+.. -+|.   ++       .+
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (262)
T 1zem_A            7 GKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF   82 (262)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999987  89999986432  1222332211  12222211 1121   11       13


Q ss_pred             CCCCEEEEcCCCC-CC-C--CCcc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVP-RK-P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~-~~-~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|..||.. .. +  ..+.   ...+..|+.    +.+...+.+.+.. .+.+|++|.
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  144 (262)
T 1zem_A           83 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN-YGRIVNTAS  144 (262)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence            3799999999974 21 1  1111   223444544    3444555554433 466666653

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=96.91  E-value=0.0022  Score=55.26  Aligned_cols=113  Identities=19%  Similarity=0.247  Sum_probs=64.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEE-ecCCccc--HHHHhccccCCCcEEE-Eec-CCc---cccc-------
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANTPG--VAADVGHINTRSEVAG-YMG-NDQ---LGQA-------   93 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~-D~~~~~g--~~~dl~~~~~~~~v~~-~~~-t~d---~~~a-------   93 (300)
                      ++|.|+||+|.+|.+++..|++.|.  ++++. +++....  ...++.....  .+.. +.. -+|   .+++       
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF--ALAIHYGQNREKAEEVAEEARRRGS--PLVAVLGANLLEAEAATALVHQAAEV   77 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESSCHHHHHHHHHHHHHTTC--SCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCC--ceEEEEeccCCCHHHHHHHHHHHHHh
Confidence            5799999999999999999999887  88887 6543221  1122222111  1111 111 112   1122       


Q ss_pred             cCCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +.+.|+||.+||......   .+   ..+.+..|..-    .+.+.+.+.+.. .+.+|++|.
T Consensus        78 ~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS  139 (245)
T 2ph3_A           78 LGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR-FGRIVNITS  139 (245)
T ss_dssp             HTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC-CCEEEEEeC
Confidence            348999999999753211   11   22344555554    566666665543 456666654

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=96.91  E-value=0.0002  Score=64.08  Aligned_cols=64  Identities=11%  Similarity=0.106  Sum_probs=37.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEE-EEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRL-ALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el-~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +|||+|||+ |.+|..++..|... +  +| .++|+++....  .+.... .  . .   +++++++++++|+||++.
T Consensus         2 ~m~I~iIG~-G~mG~~la~~l~~~-~--~v~~v~~~~~~~~~--~~~~~~-g--~-~---~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            2 SLVLNFVGT-GTLTRFFLECLKDR-Y--EIGYILSRSIDRAR--NLAEVY-G--G-K---AATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             --CCEEESC-CHHHHHHHHTTC-------CCCEECSSHHHHH--HHHHHT-C--C-C---CCSSCCCCC---CEEECS
T ss_pred             CceEEEEeC-CHHHHHHHHHHHHc-C--cEEEEEeCCHHHHH--HHHHHc-C--C-c---cCCHHHHHhcCCEEEEeC
Confidence            479999995 99999999888766 4  77 58988643222  222111 1  1 1   235567789999999985

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.91  E-value=0.011  Score=51.32  Aligned_cols=113  Identities=14%  Similarity=0.145  Sum_probs=65.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCcc---ccc-------c
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQL---GQA-------L   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-------~   94 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++...  ....++....  ..+..+.. -+|.   +++       +
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~   82 (247)
T 2jah_A            7 GKVALITGASSGIGEATARALAAEGA--AVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEAL   82 (247)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999987  89999986432  1122332211  12322211 1121   112       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCcc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .+.|++|..||.....   ..+.   ...+..|+.    +.+...+.+.+..  +.+|++|.
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  142 (247)
T 2jah_A           83 GGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMSS  142 (247)
T ss_dssp             SCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECC
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEcc
Confidence            4799999999975321   1121   223444544    4455555555444  66777654

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.90  E-value=0.0023  Score=56.18  Aligned_cols=112  Identities=20%  Similarity=0.229  Sum_probs=64.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec-CCc---cccccC------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG-NDQ---LGQALE------   95 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-t~d---~~~a~~------   95 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++.....  ..++..     .+..+.. -+|   .+++++      
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~d~~~v~~~~~~~~~~~   84 (263)
T 3ak4_A           12 GRKAIVTGGSKGIGAAIARALDKAGA--TVAIADLDVMAAQAVVAGLEN-----GGFAVEVDVTKRASVDAAMQKAIDAL   84 (263)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCTT-----CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-----CCeEEEEeCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999987  8999998643211  111211     1111111 112   223333      


Q ss_pred             -CCCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           96 -DSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 -~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                       +.|++|..||......   .+   ....+..|+.    +.+...+.+.+....+.+|+++.
T Consensus        85 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  146 (263)
T 3ak4_A           85 GGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTAS  146 (263)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence             8999999999753211   11   1223444543    34444555544442466666653

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.89  E-value=0.00028  Score=65.67  Aligned_cols=71  Identities=25%  Similarity=0.290  Sum_probs=44.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      +.|||+|+|| |+||+.++..|.+. .  ++.+.|++.....  .+.+...  .+.. ......+.+.++++|+||.+++
T Consensus        15 ~~mkilvlGa-G~vG~~~~~~L~~~-~--~v~~~~~~~~~~~--~~~~~~~--~~~~d~~d~~~l~~~~~~~DvVi~~~p   86 (365)
T 3abi_A           15 RHMKVLILGA-GNIGRAIAWDLKDE-F--DVYIGDVNNENLE--KVKEFAT--PLKVDASNFDKLVEVMKEFELVIGALP   86 (365)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTT-S--EEEEEESCHHHHH--HHTTTSE--EEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CccEEEEECC-CHHHHHHHHHHhcC-C--CeEEEEcCHHHHH--HHhccCC--cEEEecCCHHHHHHHHhCCCEEEEecC
Confidence            3579999996 99999999888654 3  8999998643211  1222110  1111 0011235567899999999875

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.88  E-value=0.0035  Score=54.86  Aligned_cols=114  Identities=17%  Similarity=0.220  Sum_probs=65.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEecC-Cc---ccccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN-DQ---LGQAL-------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~-------   94 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++...  ....++....  ..+..+... +|   .++++       
T Consensus        14 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           14 NKVALVTASTDGIGLAIARRLAQDGA--HVVVSSRKQENVDRTVATLQGEG--LSVTGTVCHVGKAEDRERLVAMAVNLH   89 (260)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999987  89999986432  1122332211  122222111 12   12222       


Q ss_pred             CCCCEEEEcCCCCCCCC----Cc---chhhhhhhHHHH----HHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g----~~---r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .+.|++|..||.....+    .+   ..+.+..|+.-.    +.+.+.+++. ..+.+|++|.
T Consensus        90 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS  151 (260)
T 2zat_A           90 GGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKR-GGGSVLIVSS  151 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEec
Confidence            38999999999642111    11   123344554443    4455555443 3466666653

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=96.88  E-value=0.0035  Score=58.81  Aligned_cols=72  Identities=15%  Similarity=0.290  Sum_probs=46.5

Q ss_pred             CCceEEEEcCCCChHHHHHH-HHHhCCC-CCEEEEEecCCcccHH-HHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           27 PDRKVAVLGAAGGIGQPLAL-LMKLNPL-VSRLALYDIANTPGVA-ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~-~L~~~~~-~~el~L~D~~~~~g~~-~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      ..+||+|+||+|.+|..+.. .|.++++ ..++.++... ..|.. .++...  ...+..   .++. +.++++|+||++
T Consensus         3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-~aG~~~~~~~~~--~~~v~~---~~~~-~~~~~vDvvf~a   75 (377)
T 3uw3_A            3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTS-NAGGKAPSFAKN--ETTLKD---ATSI-DDLKKCDVIITC   75 (377)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-CTTSBCCTTCCS--CCBCEE---TTCH-HHHHTCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEech-hcCCCHHHcCCC--ceEEEe---CCCh-hHhcCCCEEEEC
Confidence            45899999999999999998 7777774 3488888654 23321 223221  112221   1222 457899999998


Q ss_pred             CC
Q 022263          104 AG  105 (300)
Q Consensus       104 ag  105 (300)
                      .|
T Consensus        76 ~~   77 (377)
T 3uw3_A           76 QG   77 (377)
T ss_dssp             SC
T ss_pred             CC
Confidence            66

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.87  E-value=0.0048  Score=53.94  Aligned_cols=111  Identities=19%  Similarity=0.185  Sum_probs=65.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec-CCc---ccccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG-NDQ---LGQAL-------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-t~d---~~~a~-------   94 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++.....  ..++.     ..+..+.. -+|   .++++       
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (254)
T 1hdc_A            5 GKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELG-----DAARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  8999998643211  11121     12222111 112   22223       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .+.|++|..||......   .+   ....+..|+.    ..+.+.+.+++.. .+.||++|.
T Consensus        78 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  138 (254)
T 1hdc_A           78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISS  138 (254)
T ss_dssp             SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECc
Confidence            38999999999753211   11   1223444543    3456667776654 466666654

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.87  E-value=0.0022  Score=56.65  Aligned_cols=116  Identities=15%  Similarity=0.221  Sum_probs=62.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhcccc-CCCcEEEEecC-Cc---cccccC-----
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHIN-TRSEVAGYMGN-DQ---LGQALE-----   95 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~-~~~~v~~~~~t-~d---~~~a~~-----   95 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++..+.  ...++.... ....+..+... +|   .+++++     
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            6 EKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999987  899999864321  122231000 01123322111 12   223333     


Q ss_pred             --CCCEEEEcCCCCCCCC---C----c---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCC
Q 022263           96 --DSDVVIIPAGVPRKPG---M----T---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus        96 --~aDiVIi~ag~~~~~g---~----~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                        +.|++|..||......   .    +   ....+..|+.    +.+...+.+++..  +.+|++|.-
T Consensus        84 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--g~iv~isS~  149 (278)
T 1spx_A           84 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--GEIVNISSI  149 (278)
T ss_dssp             HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCT
T ss_pred             cCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEecc
Confidence              8999999998643211   1    1   1223444543    3444555554433  666666543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.86  E-value=0.0087  Score=52.89  Aligned_cols=116  Identities=21%  Similarity=0.240  Sum_probs=70.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc----------c----cHHHHhccccCCCcEEEEec-CCc--
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----------P----GVAADVGHINTRSEVAGYMG-NDQ--   89 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~----------~----g~~~dl~~~~~~~~v~~~~~-t~d--   89 (300)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|++..          .    ....++...  ...+..+.. -+|  
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~   84 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKT--GRKAYTAEVDVRDRA   84 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT--TSCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhc--CCceEEEEccCCCHH
Confidence            345799999999999999999999997  8999998521          0    111122211  112332211 112  


Q ss_pred             -ccccc-------CCCCEEEEcCCCCCCCC-Cc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263           90 -LGQAL-------EDSDVVIIPAGVPRKPG-MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (300)
Q Consensus        90 -~~~a~-------~~aDiVIi~ag~~~~~g-~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (300)
                       .++.+       ...|++|..||...... .+   -.+.+..|+.-...+.+.+..+- ..+.+|+++.
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  154 (287)
T 3pxx_A           85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS  154 (287)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence             11222       37999999999753221 11   23456677777777777776653 4567777664

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=96.86  E-value=0.0021  Score=55.35  Aligned_cols=113  Identities=20%  Similarity=0.304  Sum_probs=62.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEE-ecCCccc--HHHHhccccCCCcEEEEecC-Cc---ccccc-------
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANTPG--VAADVGHINTRSEVAGYMGN-DQ---LGQAL-------   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~-D~~~~~g--~~~dl~~~~~~~~v~~~~~t-~d---~~~a~-------   94 (300)
                      ++|.|+||+|.+|.+++..|+..|.  ++++. +++....  ...++....  ..+..+... +|   .++++       
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAW   77 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999887  78874 5543211  112222111  122222111 12   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHH----HHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .+.|+||.+||......   .+   ..+.+..|+.-.    +.+.+.+.+. ..+.+|++|.
T Consensus        78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~sS  138 (244)
T 1edo_A           78 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIAS  138 (244)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCCEEEEECC
Confidence            37999999999754211   11   123445565543    4444444433 3466666654

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.86  E-value=0.0016  Score=57.43  Aligned_cols=110  Identities=12%  Similarity=0.069  Sum_probs=63.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc---c-------ccccCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---L-------GQALEDS   97 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~-------~~a~~~a   97 (300)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.|++.... ..++.+..    +..+.. -+|   .       .+.+...
T Consensus        28 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~----~~~~~~Dv~~~~~v~~~~~~~~~~~g~i  100 (260)
T 3gem_A           28 APILITGASQRVGLHCALRLLEHGH--RVIISYRTEHAS-VTELRQAG----AVALYGDFSCETGIMAFIDLLKTQTSSL  100 (260)
T ss_dssp             CCEEESSTTSHHHHHHHHHHHHTTC--CEEEEESSCCHH-HHHHHHHT----CEEEECCTTSHHHHHHHHHHHHHHCSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCChHHH-HHHHHhcC----CeEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            4789999999999999999999987  899999875322 11222211    111110 011   1       1223478


Q ss_pred             CEEEEcCCCCCCCC--Ccc---hhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263           98 DVVIIPAGVPRKPG--MTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        98 DiVIi~ag~~~~~g--~~r---~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      |++|..||......  .+.   ...+..|+.-    .+...+.+.+. ..+.||+++.
T Consensus       101 D~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~isS  157 (260)
T 3gem_A          101 RAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTAS-EVADIVHISD  157 (260)
T ss_dssp             SEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS-SSCEEEEECC
T ss_pred             CEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcEEEEECC
Confidence            99999999753322  221   1244455443    34444444433 3466776654

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=96.86  E-value=0.0023  Score=58.88  Aligned_cols=108  Identities=17%  Similarity=0.235  Sum_probs=67.2

Q ss_pred             ccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcccccc
Q 022263           15 PAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL   94 (300)
Q Consensus        15 ~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~   94 (300)
                      -.|.+.........++|+|||. |.+|..+|..+...|.  +|..||.......  .+.      ..  +. ..++++.+
T Consensus       124 ~~W~~~~~~~~l~gktvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~--~~~------~~--~~-~~~l~ell  189 (324)
T 3evt_A          124 RQWALPMTTSTLTGQQLLIYGT-GQIGQSLAAKASALGM--HVIGVNTTGHPAD--HFH------ET--VA-FTATADAL  189 (324)
T ss_dssp             CCSSCSSCCCCSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSCCCCT--TCS------EE--EE-GGGCHHHH
T ss_pred             CCcccCCCCccccCCeEEEECc-CHHHHHHHHHHHhCCC--EEEEECCCcchhH--hHh------hc--cc-cCCHHHHH
Confidence            3454443233445679999995 9999999999998887  8999998643211  011      11  11 23667889


Q ss_pred             CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCc
Q 022263           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN  149 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d  149 (300)
                      ++||+|+++.-.  .+ +++ .++  |.       +.+....|.+++|+++  .++|
T Consensus       190 ~~aDvV~l~lPl--t~-~t~-~li--~~-------~~l~~mk~gailIN~aRG~~vd  233 (324)
T 3evt_A          190 ATANFIVNALPL--TP-TTH-HLF--ST-------ELFQQTKQQPMLINIGRGPAVD  233 (324)
T ss_dssp             HHCSEEEECCCC--CG-GGT-TCB--SH-------HHHHTCCSCCEEEECSCGGGBC
T ss_pred             hhCCEEEEcCCC--ch-HHH-Hhc--CH-------HHHhcCCCCCEEEEcCCChhhh
Confidence            999999998532  11 111 122  21       2244455789999985  3455

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=96.85  E-value=0.0035  Score=57.05  Aligned_cols=117  Identities=20%  Similarity=0.151  Sum_probs=66.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---ccccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQAL-------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a~-------   94 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++........+..+.. -+|   .++++       
T Consensus         8 ~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            8 GRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            34799999999999999999999997  899999865321  2222322111112322211 112   12222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhhH----HHHHHHHHHHHhh-----CCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINA----GIVKDLCSAIAKY-----CPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~----~i~~~i~~~i~~~-----~p~a~viv~tN  146 (300)
                      ...|++|.+||......   .+   -.+.+..|+    .+.+.+.+.+.+.     ...+.||++|.
T Consensus        86 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS  152 (319)
T 3ioy_A           86 GPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTAS  152 (319)
T ss_dssp             CCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecc
Confidence            36799999999743211   11   123444454    3445555555544     23567777654

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=96.85  E-value=0.0035  Score=53.80  Aligned_cols=35  Identities=23%  Similarity=0.266  Sum_probs=30.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      |++|.|+||+|.+|.+++..|+..|.  +|++.|++.
T Consensus         1 Mk~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~   35 (230)
T 3guy_A            1 MSLIVITGASSGLGAELAKLYDAEGK--ATYLTGRSE   35 (230)
T ss_dssp             --CEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCH
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            34689999999999999999999987  799999865

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.85  E-value=0.0049  Score=53.87  Aligned_cols=115  Identities=14%  Similarity=0.080  Sum_probs=63.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEecC-Cc---ccccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN-DQ---LGQAL-------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~-------   94 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++...  ....++....  ..+..+... +|   .++++       
T Consensus        14 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (266)
T 1xq1_A           14 AKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSMF   89 (266)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999987  89999986422  1122232211  123222111 12   12222       


Q ss_pred             -CCCCEEEEcCCCCCCC---CCc---chhhhhhhHHHHHHHHHH----HHhhCCCeEEEEecCC
Q 022263           95 -EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNP  147 (300)
Q Consensus        95 -~~aDiVIi~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP  147 (300)
                       .+.|+||.+||.....   ..+   ..+.+..|+.-...+.+.    +++.. .+.+|++|..
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~isS~  152 (266)
T 1xq1_A           90 GGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSI  152 (266)
T ss_dssp             TTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC--
T ss_pred             CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEccc
Confidence             5789999999974321   111   223455566544444444    44443 4556666543

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.84  E-value=0.0022  Score=55.31  Aligned_cols=114  Identities=17%  Similarity=0.221  Sum_probs=65.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEecC-Cc---ccccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGN-DQ---LGQAL-------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~t-~d---~~~a~-------   94 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.....  ..++.... ...+..+... +|   .++++       
T Consensus         7 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (248)
T 2pnf_A            7 GKVSLVTGSTRGIGRAIAEKLASAGS--TVIITGTSGERAKAVAEEIANKY-GVKAHGVEMNLLSEESINKAFEEIYNLV   83 (248)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhhc-CCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            45799999999999999999999887  8999998643211  12222100 1122222111 12   22233       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHH----HHHHHHHHhhCCCeEEEEec
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~t  145 (300)
                      .+.|+||.+||......   .+   ..+.+..|+.-.    +.+.+.+.+.. .+.+|++|
T Consensus        84 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~s  143 (248)
T 2pnf_A           84 DGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQR-WGRIVNIS  143 (248)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHT-CEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEc
Confidence            38999999999753211   11   223455565544    44445554443 45666665

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.84  E-value=0.0025  Score=58.88  Aligned_cols=104  Identities=21%  Similarity=0.267  Sum_probs=65.1

Q ss_pred             ccccc-CCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcccccc
Q 022263           16 AGARG-YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL   94 (300)
Q Consensus        16 ~~~~~-~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~   94 (300)
                      .|.+. +...+...++|+|||. |.+|..+|..+...|.  +|..||.......+.++       .+..    .++++.+
T Consensus       152 ~W~~~~~~~~~l~g~tvgIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~-------g~~~----~~l~ell  217 (335)
T 2g76_A          152 KWERKKFMGTELNGKTLGILGL-GRIGREVATRMQSFGM--KTIGYDPIISPEVSASF-------GVQQ----LPLEEIW  217 (335)
T ss_dssp             CCCTGGGCBCCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSSCHHHHHHT-------TCEE----CCHHHHG
T ss_pred             CCCccCCCCcCCCcCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhc-------Ccee----CCHHHHH
Confidence            35432 3334556779999995 9999999999988776  89999986543221111       1121    2566889


Q ss_pred             CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ++||+|+++....  + .++ .++  |    +   +.+....|++++|+++-
T Consensus       218 ~~aDvV~l~~P~t--~-~t~-~li--~----~---~~l~~mk~gailIN~ar  256 (335)
T 2g76_A          218 PLCDFITVHTPLL--P-STT-GLL--N----D---NTFAQCKKGVRVVNCAR  256 (335)
T ss_dssp             GGCSEEEECCCCC--T-TTT-TSB--C----H---HHHTTSCTTEEEEECSC
T ss_pred             hcCCEEEEecCCC--H-HHH-Hhh--C----H---HHHhhCCCCcEEEECCC
Confidence            9999999985322  1 111 122  1    1   22344457899998853

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.84  E-value=0.0054  Score=53.05  Aligned_cols=75  Identities=21%  Similarity=0.235  Sum_probs=48.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC-Cccc--HHHHhccccCCCcEEEEecC-Cc---cccccC-----
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTPG--VAADVGHINTRSEVAGYMGN-DQ---LGQALE-----   95 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~-~~~g--~~~dl~~~~~~~~v~~~~~t-~d---~~~a~~-----   95 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++ ....  ...++...  ...+..+.+. +|   .+++++     
T Consensus         7 ~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (258)
T 3afn_B            7 GKRVLITGSSQGIGLATARLFARAGA--KVGLHGRKAPANIDETIASMRAD--GGDAAFFAADLATSEACQQLVDEFVAK   82 (258)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEECCCchhhHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999887  89999987 4322  12223221  1123322211 12   223333     


Q ss_pred             --CCCEEEEcCCC
Q 022263           96 --DSDVVIIPAGV  106 (300)
Q Consensus        96 --~aDiVIi~ag~  106 (300)
                        +.|+||.+||.
T Consensus        83 ~g~id~vi~~Ag~   95 (258)
T 3afn_B           83 FGGIDVLINNAGG   95 (258)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence              89999999986

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=96.83  E-value=0.0086  Score=52.59  Aligned_cols=124  Identities=15%  Similarity=0.145  Sum_probs=66.2

Q ss_pred             ccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC-c--ccHHHHhccccCCCcEEEEec-CCc---cc
Q 022263           19 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGVAADVGHINTRSEVAGYMG-NDQ---LG   91 (300)
Q Consensus        19 ~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~-~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~   91 (300)
                      +-|.......++|.|+||+|.+|.+++..|+..|.  ++++.+... .  .....++....  ..+..+.. -+|   .+
T Consensus        17 n~~~~~~l~~k~vlVTGas~gIG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~   92 (267)
T 4iiu_A           17 NLYFQSNAMSRSVLVTGASKGIGRAIARQLAADGF--NIGVHYHRDAAGAQETLNAIVANG--GNGRLLSFDVANREQCR   92 (267)
T ss_dssp             --------CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHH
T ss_pred             hhhhccccCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHH
Confidence            33444444556899999999999999999999987  776665433 1  11222332211  12222211 112   12


Q ss_pred             ccc-------CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           92 QAL-------EDSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        92 ~a~-------~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +++       ...|++|..||......   .+   ....+..|..    +.+...+.+.+....+.+|++|.
T Consensus        93 ~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  164 (267)
T 4iiu_A           93 EVLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSS  164 (267)
T ss_dssp             HHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             HHHHHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence            222       38999999999754221   11   1234445544    34444455554556777777764

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.83  E-value=0.0016  Score=63.82  Aligned_cols=77  Identities=23%  Similarity=0.284  Sum_probs=54.4

Q ss_pred             ccccc-cCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccc
Q 022263           15 PAGAR-GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA   93 (300)
Q Consensus        15 ~~~~~-~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a   93 (300)
                      -.|.| .|...+...++|+|||. |.+|+.+|..|...+.  +|+.||.......+.++       .+..   . ++++.
T Consensus       128 g~w~~~~~~~~~l~g~~vgIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~-------g~~~---~-~l~e~  193 (529)
T 1ygy_A          128 HTWKRSSFSGTEIFGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQL-------GIEL---L-SLDDL  193 (529)
T ss_dssp             TCCCGGGCCBCCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHH-------TCEE---C-CHHHH
T ss_pred             CCCcccCcCccccCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CcEE---c-CHHHH
Confidence            34655 35445566789999995 9999999999998887  89999986532222222       1121   1 45678


Q ss_pred             cCCCCEEEEcCC
Q 022263           94 LEDSDVVIIPAG  105 (300)
Q Consensus        94 ~~~aDiVIi~ag  105 (300)
                      +++||+|+++..
T Consensus       194 ~~~aDvV~l~~P  205 (529)
T 1ygy_A          194 LARADFISVHLP  205 (529)
T ss_dssp             HHHCSEEEECCC
T ss_pred             HhcCCEEEECCC
Confidence            999999999863

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=96.83  E-value=0.011  Score=52.04  Aligned_cols=116  Identities=21%  Similarity=0.289  Sum_probs=68.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc----------cc----HHHHhccccCCCcEEEEec-CCc--
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----------PG----VAADVGHINTRSEVAGYMG-NDQ--   89 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~----------~g----~~~dl~~~~~~~~v~~~~~-t~d--   89 (300)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|++..          ..    ...++....  ..+..+.. -+|  
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   87 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRE   87 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHH
Confidence            345899999999999999999999997  8999998521          11    111122111  12332211 112  


Q ss_pred             -ccccc-------CCCCEEEEcCCCCCCCCC--cchhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263           90 -LGQAL-------EDSDVVIIPAGVPRKPGM--TRDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        90 -~~~a~-------~~aDiVIi~ag~~~~~g~--~r~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                       .++++       ...|++|..||.......  +-.+.+..|+    .+.+.+.+.+.+....+.||+++.
T Consensus        88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  158 (278)
T 3sx2_A           88 SLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISS  158 (278)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence             22222       379999999997532211  1223444454    355566666666666777777764

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=96.83  E-value=0.0062  Score=53.24  Aligned_cols=114  Identities=13%  Similarity=0.175  Sum_probs=66.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--c--HHHHhccccCCCcEEEEec-CCc---ccccc------
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--G--VAADVGHINTRSEVAGYMG-NDQ---LGQAL------   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a~------   94 (300)
                      +++.|+||+|.+|.+++..|++.|.  +|++.|++...  .  ...++....  ..+..+.. -+|   .++++      
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   78 (258)
T 3a28_C            3 KVAMVTGGAQGIGRGISEKLAADGF--DIAVADLPQQEEQAAETIKLIEAAD--QKAVFVGLDVTDKANFDSAIDEAAEK   78 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEECGGGHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999887  89999986432  1  112232211  12322211 112   12222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 -~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                       ...|++|..||......   .+   ..+.+..|+.    +.+.+.+.+.+....+.+|+++.
T Consensus        79 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  141 (258)
T 3a28_C           79 LGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAAS  141 (258)
T ss_dssp             HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECc
Confidence             37999999999753211   11   1223444544    44555566655544366666654

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=96.82  E-value=0.0079  Score=52.62  Aligned_cols=114  Identities=12%  Similarity=0.024  Sum_probs=65.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---cccc-------c
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQA-------L   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~   94 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|+++...  ...++....  ..+..+.. -+|   .+++       +
T Consensus         9 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (260)
T 2ae2_A            9 GCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   84 (260)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  899999864321  122232211  12222211 112   1122       2


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHH----HHHHHHHHhhCCCeEEEEecC
Q 022263           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 -~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tN  146 (300)
                       ...|++|..||......   .+   ....+..|+.-.    +...+.+.+. ..+.+|++|.
T Consensus        85 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS  146 (260)
T 2ae2_A           85 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFISS  146 (260)
T ss_dssp             TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence             57999999999753211   11   122444555443    4444444443 3466777654

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.82  E-value=0.0013  Score=56.43  Aligned_cols=110  Identities=18%  Similarity=0.204  Sum_probs=63.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec-CCc---cccc-------cC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG-NDQ---LGQA-------LE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~~   95 (300)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.|++.....  ..++.      .+..+.+ -+|   .+++       +.
T Consensus         6 k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (234)
T 2ehd_A            6 GAVLITGASRGIGEATARLLHAKGY--RVGLMARDEKRLQALAAELE------GALPLPGDVREEGDWARAVAAMEEAFG   77 (234)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST------TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhh------hceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4699999999999999999999887  8999998542211  11121      1111111 111   1122       24


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHH----HHHHHHHHhhCCCeEEEEecCC
Q 022263           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  147 (300)
                      +.|++|.+||......   .+   ..+.+..|+.-.    +.+.+.+.+. ..+.+|++|..
T Consensus        78 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~iv~isS~  138 (234)
T 2ehd_A           78 ELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR-GGGTIVNVGSL  138 (234)
T ss_dssp             CCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCT
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCcEEEEECCc
Confidence            7899999999753211   11   123444554433    4555555543 34667666543

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.82  E-value=0.008  Score=53.28  Aligned_cols=157  Identities=16%  Similarity=0.126  Sum_probs=83.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCC-CcEEEEec-CCc---ccccc------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTR-SEVAGYMG-NDQ---LGQAL------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~-~~v~~~~~-t~d---~~~a~------   94 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++..  .....++...... ..+..+.. -+|   .++++      
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           11 DRTYLVTGGGSGIGKGVAAGLVAAGA--SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            45799999999999999999999987  8999998653  2223334332211 12333221 112   11222      


Q ss_pred             -CCCCEEEEcCCCCCCCC----Cc---chhhhhhhHHHH----HHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHh
Q 022263           95 -EDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKA  162 (300)
Q Consensus        95 -~~aDiVIi~ag~~~~~g----~~---r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~  162 (300)
                       ...|++|..||.....+    .+   -...+..|+.-.    +...+.+.+ ...+.||++|....           ..
T Consensus        89 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~-~~~g~iv~isS~~~-----------~~  156 (281)
T 3svt_A           89 HGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVR-GGGGSFVGISSIAA-----------SN  156 (281)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCEEEEEECCHHH-----------HS
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCcEEEEEeCHHH-----------cC
Confidence             36799999999632221    11   123455565544    444444443 34567777653211           11


Q ss_pred             CCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       163 ~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                      + .+..-.++.+..--..+.+.+|.+++  +..|++..+
T Consensus       157 ~-~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v  192 (281)
T 3svt_A          157 T-HRWFGAYGVTKSAVDHLMQLAADELG--ASWVRVNSI  192 (281)
T ss_dssp             C-CTTCTHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             C-CCCChhHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            1 22222233332223445666777764  344555444

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=96.81  E-value=0.0016  Score=56.90  Aligned_cols=113  Identities=16%  Similarity=0.216  Sum_probs=68.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---cccc-------
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQA-------   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------   93 (300)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++..     .+..+.. -+|   .++.       
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~   77 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA--TVIVSDINAEGAKAAAASIGK-----KARAIAADISDPGSVKALFAEIQAL   77 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCT-----TEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----ceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999997  899999865321  1122211     1221110 011   1222       


Q ss_pred             cCCCCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +...|++|..||......   .+   -...+..|+.    +.+...+.+.+..+.+.+|+++.
T Consensus        78 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  140 (247)
T 3rwb_A           78 TGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIAS  140 (247)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECc
Confidence            237999999999753221   11   1223444543    45555666777666677777764

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=96.81  E-value=0.011  Score=52.71  Aligned_cols=120  Identities=13%  Similarity=0.104  Sum_probs=68.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhcccc---CCCcEEEEecC-Cc---ccccc--
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHIN---TRSEVAGYMGN-DQ---LGQAL--   94 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~---~~~~v~~~~~t-~d---~~~a~--   94 (300)
                      .+.++|.|+||+|.+|.+++..|+..|.  +|+++|++...  ....++....   ....+..+.+. +|   .++++  
T Consensus        16 l~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~   93 (303)
T 1yxm_A           16 LQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS   93 (303)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHH
Confidence            3446899999999999999999999987  89999986422  1222332210   11123332211 12   22223  


Q ss_pred             -----CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 022263           95 -----EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (300)
Q Consensus        95 -----~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  147 (300)
                           ...|+||.+||......   .+   ....+..|+.-...+.+.+.+.   ...+.+|+++..
T Consensus        94 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~  160 (303)
T 1yxm_A           94 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVP  160 (303)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCC
T ss_pred             HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEee
Confidence                 35899999999643211   11   1234556665555555554331   124666666543

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.81  E-value=0.0042  Score=54.57  Aligned_cols=111  Identities=18%  Similarity=0.207  Sum_probs=66.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec-CCc---cccccC------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG-NDQ---LGQALE------   95 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-t~d---~~~a~~------   95 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++.....  ..++..     .+..+.. -+|   .+++++      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   79 (260)
T 1nff_A            7 GKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELAD-----AARYVHLDVTQPAQWKAAVDTAVTAF   79 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhc-----CceEEEecCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999987  8999998643221  122221     1222111 111   223333      


Q ss_pred             -CCCEEEEcCCCCCCC---CCc---chhhhhhhHHHH----HHHHHHHHhhCCCeEEEEecC
Q 022263           96 -DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 -~aDiVIi~ag~~~~~---g~~---r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tN  146 (300)
                       +.|++|..||.....   ..+   ..+.+..|..-.    +.+.+.+++.. .+.+|++|.
T Consensus        80 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  140 (260)
T 1nff_A           80 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISS  140 (260)
T ss_dssp             SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEee
Confidence             899999999975321   111   123445555433    56666666553 456666654

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.81  E-value=0.0092  Score=52.54  Aligned_cols=116  Identities=16%  Similarity=0.190  Sum_probs=69.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc-------c
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA-------L   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~   94 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++...  ....++.... ...+..+.. -+|   .+++       +
T Consensus        20 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   96 (266)
T 4egf_A           20 GKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQF-GTDVHTVAIDLAEPDAPAELARRAAEAF   96 (266)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999987  89999986432  2222332211 112222211 112   1122       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Ccc---hhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|..||......   .+.   ...+..|+    .+.+.+.+.+.+....+.||+++.
T Consensus        97 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  158 (266)
T 4egf_A           97 GGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVAS  158 (266)
T ss_dssp             TSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence            47999999999754221   111   22344454    345666666766665677777764

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.81  E-value=0.0027  Score=55.30  Aligned_cols=112  Identities=21%  Similarity=0.192  Sum_probs=63.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc---cccc-------cCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQA-------LED   96 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~~~   96 (300)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++....  ++.+.. .  +..+.. -+|   .+++       +..
T Consensus         5 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~--~~~~~~-~--~~~~~~D~~~~~~~~~~~~~~~~~~g~   77 (245)
T 1uls_A            5 DKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLR--EAAEAV-G--AHPVVMDVADPASVERGFAEALAHLGR   77 (245)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHHTT-T--CEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHHc-C--CEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            35799999999999999999999987  8999998643211  111110 0  111110 112   1222       235


Q ss_pred             CCEEEEcCCCCCCCC---Cc---chhhhhhhHHHHHHHHHHHHhh---CCCeEEEEecC
Q 022263           97 SDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (300)
Q Consensus        97 aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (300)
                      .|++|..||......   .+   ..+.+..|+.-...+.+.+.++   ...+.+|++|.
T Consensus        78 id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS  136 (245)
T 1uls_A           78 LDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTAS  136 (245)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence            899999999753211   11   1234556665544444444333   23466776654

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=96.81  E-value=0.0073  Score=52.54  Aligned_cols=113  Identities=18%  Similarity=0.259  Sum_probs=66.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC-cccHHHHhccccCCCcEEEEec-CCc---cccc-------cC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMG-NDQ---LGQA-------LE   95 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~~   95 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++. ..... ++....  ..+..+.. -+|   .+++       +.
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~-~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (249)
T 2ew8_A            7 DKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEA-AIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFG   81 (249)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHH-HHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCchhHHHH-HHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            35799999999999999999999987  899999876 32221 232211  12322211 112   1122       35


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ..|++|..||......   .+   ..+.+..|+.-    .+.+.+.+++.. .+.+|++|.
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  141 (249)
T 2ew8_A           82 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTS  141 (249)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcc
Confidence            7999999999753211   11   12244455544    555555566553 466666654

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.80  E-value=0.0049  Score=54.48  Aligned_cols=112  Identities=24%  Similarity=0.238  Sum_probs=65.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---ccccc------
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQAL------   94 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a~------   94 (300)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++..     .+..+.. -+|   .++++      
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA--RVVLADLPETDLAGAAASVGR-----GAVHHVVDLTNEVSVRALIDFTIDT   82 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSCHHHHHHHHCT-----TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC-----CeEEEECCCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999997  899999975322  2222211     1111110 111   22222      


Q ss_pred             -CCCCEEEEcCCCCCC-CC----Cc---chhhhhhhHHHH----HHHHHHHHhhCCCeEEEEecC
Q 022263           95 -EDSDVVIIPAGVPRK-PG----MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 -~~aDiVIi~ag~~~~-~g----~~---r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tN  146 (300)
                       ...|++|..||.... +.    .+   ....+..|+.-.    +...+.+.+. ..+.||+++.
T Consensus        83 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS  146 (271)
T 3tzq_B           83 FGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA-GGGAIVNISS  146 (271)
T ss_dssp             HSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECC
Confidence             379999999997522 21    11   123455565544    4444444443 4567777654

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=96.80  E-value=0.011  Score=51.62  Aligned_cols=118  Identities=11%  Similarity=0.027  Sum_probs=68.5

Q ss_pred             CceEEEEcCCCC--hHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccccCCCcEEEEec-CCc---cccc-------
Q 022263           28 DRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMG-NDQ---LGQA-------   93 (300)
Q Consensus        28 ~~KI~IIGaaG~--VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------   93 (300)
                      .+++.|+||+|+  +|.+++..|+..|.  +|++.|++... ....++........+..+.. -+|   .++.       
T Consensus         7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            7 GRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            457999999988  99999999999987  89999886421 22222322111112222211 112   2222       


Q ss_pred             cCCCCEEEEcCCCCCC-----C--CCc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 022263           94 LEDSDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~-----~--g~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (300)
                      +...|++|..||....     +  ..+   ....+..|..-...+.+.+..+- +.+.||+++..
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~  149 (266)
T 3oig_A           85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYL  149 (266)
T ss_dssp             HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred             hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence            2378999999997531     1  111   12244556655556666666553 35777777643

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.80  E-value=0.0017  Score=57.82  Aligned_cols=113  Identities=16%  Similarity=0.169  Sum_probs=67.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc-------cC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA-------LE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~~   95 (300)
                      +.+.|+||+|.+|.+++..|++.|.  +|++.|++...  ....++..     .+..+.. -+|   .++.       +.
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~~~~~g  101 (272)
T 4dyv_A           29 KIAIVTGAGSGVGRAVAVALAGAGY--GVALAGRRLDALQETAAEIGD-----DALCVPTDVTDPDSVRALFTATVEKFG  101 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTS-----CCEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----CeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4678899999999999999999997  89999986432  11222211     1111111 111   2222       23


Q ss_pred             CCCEEEEcCCCCCCCC----Cc---chhhhhhhHH----HHHHHHHHHHhhCC-CeEEEEecCCC
Q 022263           96 DSDVVIIPAGVPRKPG----MT---RDDLFNINAG----IVKDLCSAIAKYCP-NAIVNMISNPV  148 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g----~~---r~dl~~~N~~----i~~~i~~~i~~~~p-~a~viv~tNP~  148 (300)
                      ..|++|..||.....+    .+   -.+.+..|+.    +.+...+.+.+..+ .+.||+++.-.
T Consensus       102 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~  166 (272)
T 4dyv_A          102 RVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSIS  166 (272)
T ss_dssp             CCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSS
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchh
Confidence            8999999999743211    11   1233445544    45666666666543 57777776543

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.79  E-value=0.016  Score=51.31  Aligned_cols=116  Identities=20%  Similarity=0.205  Sum_probs=68.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC-------------c--ccHHHHhccccCCCcEEEEec-CCc-
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-------------T--PGVAADVGHINTRSEVAGYMG-NDQ-   89 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~-------------~--~g~~~dl~~~~~~~~v~~~~~-t~d-   89 (300)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++.             .  +....++...  ...+..+.. -+| 
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~   89 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGA--DIIACDICAPVSASVTYAPASPEDLDETARLVEDQ--GRKALTRVLDVRDD   89 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT--TCCEEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCeEEEEEcCCCCH
Confidence            345799999999999999999999997  899999731             1  1111222221  112222211 112 


Q ss_pred             --cccc-------cCCCCEEEEcCCCCCCCC---Ccc---hhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263           90 --LGQA-------LEDSDVVIIPAGVPRKPG---MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        90 --~~~a-------~~~aDiVIi~ag~~~~~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                        .++.       +...|++|..||......   .+.   ...+..|+    .+.+...+.+.+....+.||++|.
T Consensus        90 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  165 (280)
T 3pgx_A           90 AALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSS  165 (280)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence              1122       347999999999753211   111   22334454    355666666666665777777764

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.79  E-value=0.0022  Score=59.47  Aligned_cols=69  Identities=19%  Similarity=0.235  Sum_probs=49.3

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHH-hCCCCCEEEEEecCCcccH-HHHhccccCCCcEEEEecCCccccccCCCCEEE
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTPGV-AADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~-~~~~~~el~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      .....++|+|||. |.||..++..+. ..|.  +|..+|.+..... ..++       .+..   .+++++.+++||+|+
T Consensus       159 ~~l~g~~vgIIG~-G~IG~~vA~~l~~~~G~--~V~~~d~~~~~~~~~~~~-------g~~~---~~~l~ell~~aDvVi  225 (348)
T 2w2k_A          159 HNPRGHVLGAVGL-GAIQKEIARKAVHGLGM--KLVYYDVAPADAETEKAL-------GAER---VDSLEELARRSDCVS  225 (348)
T ss_dssp             CCSTTCEEEEECC-SHHHHHHHHHHHHTTCC--EEEEECSSCCCHHHHHHH-------TCEE---CSSHHHHHHHCSEEE
T ss_pred             cCCCCCEEEEEEE-CHHHHHHHHHHHHhcCC--EEEEECCCCcchhhHhhc-------CcEE---eCCHHHHhccCCEEE
Confidence            3456679999995 999999999998 7787  8999998653222 1111       1221   135667789999999


Q ss_pred             EcCC
Q 022263          102 IPAG  105 (300)
Q Consensus       102 i~ag  105 (300)
                      ++..
T Consensus       226 l~vp  229 (348)
T 2w2k_A          226 VSVP  229 (348)
T ss_dssp             ECCC
T ss_pred             EeCC
Confidence            9863

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.79  E-value=0.014  Score=51.79  Aligned_cols=116  Identities=19%  Similarity=0.189  Sum_probs=68.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--------------ccHH----HHhccccCCCcEEEEec-C
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--------------PGVA----ADVGHINTRSEVAGYMG-N   87 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--------------~g~~----~dl~~~~~~~~v~~~~~-t   87 (300)
                      +.+.+.|+||+|.+|.+++..|++.|.  .|+++|+++.              ....    .++...  ...+..+.. -
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv   85 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH--NRRIVTAEVDV   85 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT--TCCEEEEECCT
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeccccccccccccccccCCHHHHHHHHHHHhhc--CCceEEEEcCC
Confidence            345799999999999999999999997  8999998621              1111    112111  112332211 1


Q ss_pred             Cc---cccc-------cCCCCEEEEcCCCCCCCC----Ccc---hhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263           88 DQ---LGQA-------LEDSDVVIIPAGVPRKPG----MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        88 ~d---~~~a-------~~~aDiVIi~ag~~~~~g----~~r---~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +|   .++.       +...|++|..||......    .+.   ...+..|+    .+.+...+.+.+....+.||++|.
T Consensus        86 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  165 (286)
T 3uve_A           86 RDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSS  165 (286)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence            12   1122       237999999999754322    121   22344454    355666666666665677777764

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=96.79  E-value=0.0048  Score=54.81  Aligned_cols=113  Identities=16%  Similarity=0.162  Sum_probs=65.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEecC-Cc---cccc-------cC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGN-DQ---LGQA-------LE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t-~d---~~~a-------~~   95 (300)
                      +++.|+||+|.+|..++..|+..|.  +|++.|++....  ...++...   ..+..+..+ +|   .+++       +.
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   96 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW--SLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLPEEFA   96 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCCGGGS
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999987  899999864321  12223221   122222111 11   1222       33


Q ss_pred             CCCEEEEcCCCCCC--CC--Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRK--PG--MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~--~g--~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ..|++|..||....  +-  .+   -...+..|+.    +.+.+.+.+.+......||+++.
T Consensus        97 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS  158 (272)
T 2nwq_A           97 TLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGS  158 (272)
T ss_dssp             SCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            56999999997532  11  11   1223444543    35666666666544426666654

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=96.79  E-value=0.0062  Score=52.71  Aligned_cols=111  Identities=19%  Similarity=0.254  Sum_probs=64.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcE-EEEec-CCc---cccc------c
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEV-AGYMG-NDQ---LGQA------L   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v-~~~~~-t~d---~~~a------~   94 (300)
                      .++|.|+||+|.+|.+++..|++.|.  +|+++|++..+.  ...++..     .+ ..+.. -+|   .+++      +
T Consensus        11 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (254)
T 2wsb_A           11 GACAAVTGAGSGIGLEICRAFAASGA--RLILIDREAAALDRAAQELGA-----AVAARIVADVTDAEAMTAAAAEAEAV   83 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcc-----cceeEEEEecCCHHHHHHHHHHHHhh
Confidence            35899999999999999999999987  899999864321  1122211     11 21111 112   2222      2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .+.|+||.+||......   .+   ..+.+..|..-    .+.+.+.+.+.. .+.+|++|.
T Consensus        84 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~isS  144 (254)
T 2wsb_A           84 APVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG-AGAIVNLGS  144 (254)
T ss_dssp             SCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEec
Confidence            57899999999753211   11   12334455544    455555555543 456666654

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=96.78  E-value=0.0041  Score=54.02  Aligned_cols=114  Identities=17%  Similarity=0.243  Sum_probs=66.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec-CCccc--HHHHhccccCCCcEEEEec-CCc---ccccc------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQAL------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~-~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a~------   94 (300)
                      .+++.|+||+|.+|..++..|+..|.  +|++.++ ++...  ...++....  ..+..+.. -+|   .++++      
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            4 GKVALVTGASRGIGRAIAIDLAKQGA--NVVVNYAGNEQKANEVVDEIKKLG--SDAIAVRADVANAEDVTNMVKQTVDV   79 (246)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999987  8999987 43221  122232211  12222211 112   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 -~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (300)
                       .+.|++|..||......   .+   ....+..|..-    .+.+.+.+++.. .+.+|++|.
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  141 (246)
T 2uvd_A           80 FGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR-HGRIVNIAS  141 (246)
T ss_dssp             HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECC
Confidence             37999999999753211   11   12344555544    556666665544 466666654

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.78  E-value=0.0021  Score=57.69  Aligned_cols=75  Identities=24%  Similarity=0.348  Sum_probs=46.0

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEE-EEecCCcccHHHHhccccC-CCcEEEEecCCccccccCCCCEEEEc
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~-L~D~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      .+|+||+|+||+|.||+.++..+.+.+-. ||+ .+|.+.....-.|+..... ...+.   .++|+++.++++|+||..
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~-eLv~~~d~~~~~~~G~d~gel~g~~~gv~---v~~dl~~ll~~~DVVIDf   80 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDA-TLVGALDRTGSPQLGQDAGAFLGKQTGVA---LTDDIERVCAEADYLIDF   80 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTE-EEEEEBCCTTCTTTTSBTTTTTTCCCSCB---CBCCHHHHHHHCSEEEEC
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEEecCcccccccHHHHhCCCCCce---ecCCHHHHhcCCCEEEEc
Confidence            35789999998899999999888776533 444 4676532111112222111 11222   235777778899999886


Q ss_pred             C
Q 022263          104 A  104 (300)
Q Consensus       104 a  104 (300)
                      .
T Consensus        81 T   81 (272)
T 4f3y_A           81 T   81 (272)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.78  E-value=0.011  Score=52.50  Aligned_cols=114  Identities=16%  Similarity=0.183  Sum_probs=66.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc-------c
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA-------L   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~   94 (300)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++...  ....++....   .+..+.. -+|   .+++       +
T Consensus        29 ~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (276)
T 2b4q_A           29 GRIALVTGGSRGIGQMIAQGLLEAGA--RVFICARDAEACADTATRLSAYG---DCQAIPADLSSEAGARRLAQALGELS  103 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHTTSS---CEEECCCCTTSHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---ceEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999987  89999986432  1222332211   2222111 011   1122       3


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---chhhhhhhHH----HHHHHHHHHHhhCC---CeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAG----IVKDLCSAIAKYCP---NAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~---r~dl~~~N~~----i~~~i~~~i~~~~p---~a~viv~tN  146 (300)
                      ...|++|..||.....   ..+   ....+..|+.    +.+.+.+.+++...   .+.||+++.
T Consensus       104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS  168 (276)
T 2b4q_A          104 ARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGS  168 (276)
T ss_dssp             SCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence            4799999999965321   111   1234445544    34666666665543   167777654

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.77  E-value=0.0017  Score=60.18  Aligned_cols=99  Identities=21%  Similarity=0.314  Sum_probs=63.2

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ....++|+|||. |.||+.++..+...|.  +|..+|.........++       .+..   ..++++.++.||+|+++.
T Consensus       165 ~l~g~tvGIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~-------g~~~---~~~l~ell~~aDvV~l~~  231 (347)
T 1mx3_A          165 RIRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERAL-------GLQR---VSTLQDLLFHSDCVTLHC  231 (347)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHH-------TCEE---CSSHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhHhhc-------CCee---cCCHHHHHhcCCEEEEcC
Confidence            446679999995 9999999999998887  89999986543322211       1111   125667889999999985


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC--CCc
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--PVN  149 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN--P~d  149 (300)
                      ...  + .++ .++  |    .   +.+....|++++|+++.  ++|
T Consensus       232 P~t--~-~t~-~li--~----~---~~l~~mk~gailIN~arg~~vd  265 (347)
T 1mx3_A          232 GLN--E-HNH-HLI--N----D---FTVKQMRQGAFLVNTARGGLVD  265 (347)
T ss_dssp             CCC--T-TCT-TSB--S----H---HHHTTSCTTEEEEECSCTTSBC
T ss_pred             CCC--H-HHH-HHh--H----H---HHHhcCCCCCEEEECCCChHHh
Confidence            321  1 111 122  1    1   22333457899998853  455

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=96.76  E-value=0.0058  Score=53.33  Aligned_cols=113  Identities=11%  Similarity=0.002  Sum_probs=65.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HHHhccccCCCcEEEEecCCccccc-------cCCCCEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGHINTRSEVAGYMGNDQLGQA-------LEDSDVV  100 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~t~d~~~a-------~~~aDiV  100 (300)
                      +++.|+||+|.+|.+++..|++.|.  +|++.|++..... ..++.....  .+..+ ...+.++.       +...|++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~--~~~~~-d~~~v~~~~~~~~~~~g~iD~l   76 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYP--QLKPM-SEQEPAELIEAVTSAYGQVDVL   76 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCT--TSEEC-CCCSHHHHHHHHHHHHSCCCEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcCC--cEEEE-CHHHHHHHHHHHHHHhCCCCEE
Confidence            4689999999999999999999987  8999998653222 122322111  11111 11222222       3478999


Q ss_pred             EEcCCCC-CCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCC
Q 022263          101 IIPAGVP-RKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus       101 Ii~ag~~-~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                      |..||.. ....   .+   ....+..|+.    +.+.+.+.+.+.. .+.+|++|.-
T Consensus        77 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  133 (254)
T 1zmt_A           77 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSA  133 (254)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCS
T ss_pred             EECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCc
Confidence            9999975 2111   11   1223444544    4455555555543 4566666543

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.76  E-value=0.014  Score=51.06  Aligned_cols=117  Identities=16%  Similarity=0.179  Sum_probs=67.7

Q ss_pred             CCceEEEEcCCCC-hHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEecC-Cc---cccc------
Q 022263           27 PDRKVAVLGAAGG-IGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN-DQ---LGQA------   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~-VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t-~d---~~~a------   93 (300)
                      +.+++.|+||+|+ +|.+++..|++.|.  +|++.|++...  ....++.... ...+..+... +|   .++.      
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~   97 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVE   97 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHH
Confidence            3458999998775 99999999999987  89999986532  2222332221 1133332211 12   1122      


Q ss_pred             -cCCCCEEEEcCCCCCCCC---Ccc---hhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263           94 -LEDSDVVIIPAGVPRKPG---MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        94 -~~~aDiVIi~ag~~~~~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                       +...|++|..||......   .+.   ...+..|+    .+.+...+.+.+....+.+|+++.
T Consensus        98 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  161 (266)
T 3o38_A           98 KAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNAS  161 (266)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECC
T ss_pred             HhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence             236799999999753221   121   22344454    344555555555446677777754

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=96.75  E-value=0.0026  Score=59.40  Aligned_cols=102  Identities=19%  Similarity=0.294  Sum_probs=64.8

Q ss_pred             CCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEE
Q 022263           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        22 ~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      .......++|+|||. |.+|..+|..+...|.  +|..||.........+.       .+. .   .++++.++.||+|+
T Consensus       170 ~~~~l~gktvGIIGl-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~-~---~~l~ell~~aDvV~  235 (365)
T 4hy3_A          170 SARLIAGSEIGIVGF-GDLGKALRRVLSGFRA--RIRVFDPWLPRSMLEEN-------GVE-P---ASLEDVLTKSDFIF  235 (365)
T ss_dssp             SCCCSSSSEEEEECC-SHHHHHHHHHHTTSCC--EEEEECSSSCHHHHHHT-------TCE-E---CCHHHHHHSCSEEE
T ss_pred             cccccCCCEEEEecC-CcccHHHHHhhhhCCC--EEEEECCCCCHHHHhhc-------Cee-e---CCHHHHHhcCCEEE
Confidence            334456679999995 9999999998887776  89999986422221111       111 1   25678899999999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCcc
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNS  150 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d~  150 (300)
                      ++.-..  + ++| .++  |.       +.+....|++++|+++  .++|.
T Consensus       236 l~~Plt--~-~T~-~li--~~-------~~l~~mk~gailIN~aRG~~vde  273 (365)
T 4hy3_A          236 VVAAVT--S-ENK-RFL--GA-------EAFSSMRRGAAFILLSRADVVDF  273 (365)
T ss_dssp             ECSCSS--C-C----CC--CH-------HHHHTSCTTCEEEECSCGGGSCH
T ss_pred             EcCcCC--H-HHH-hhc--CH-------HHHhcCCCCcEEEECcCCchhCH
Confidence            985321  1 111 112  21       2344456899999985  45663

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.75  E-value=0.009  Score=51.56  Aligned_cols=116  Identities=16%  Similarity=0.171  Sum_probs=65.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEecC---Ccc---c-------
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN---DQL---G-------   91 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t---~d~---~-------   91 (300)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++...  ....++...... ....+...   +|.   +       
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~d~d~~~~~~~~~~~~~~~   89 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA--SVVLLGRTEASLAEVSDQIKSAGQP-QPLIIALNLENATAQQYRELAARVE   89 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTSC-CCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcCCC-CceEEEeccccCCHHHHHHHHHHHH
Confidence            345899999999999999999999997  89999986532  122223222111 11111111   111   1       


Q ss_pred             cccCCCCEEEEcCCCCCCCC----Cc---chhhhhhhHHHH----HHHHHHHHhhCCCeEEEEecC
Q 022263           92 QALEDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        92 ~a~~~aDiVIi~ag~~~~~g----~~---r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +.+...|++|..||.....+    .+   -...+..|+.-.    +.+.+.+++ ...+.+|+++.
T Consensus        90 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~~~~~iv~isS  154 (247)
T 3i1j_A           90 HEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKR-SEDASIAFTSS  154 (247)
T ss_dssp             HHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-SSSEEEEEECC
T ss_pred             HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-CCCCeEEEEcc
Confidence            12347899999999742221    11   122344554444    444444443 34567777654

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=96.73  E-value=0.0052  Score=56.76  Aligned_cols=98  Identities=15%  Similarity=0.279  Sum_probs=58.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC---cccHHH-Hhc-cccC--CCcEEEEecCCcccccc-CCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAA-DVG-HINT--RSEVAGYMGNDQLGQAL-EDSD   98 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~---~~g~~~-dl~-~~~~--~~~v~~~~~t~d~~~a~-~~aD   98 (300)
                      .|+||+|+||+|.+|..+...|...+.+ |+..+...+   ..|+.. |.. +...  ...+...   .+. +++ +++|
T Consensus         3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~-el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~---~~~-~~~~~~~D   77 (337)
T 3dr3_A            3 AMLNTLIVGASGYAGAELVTYVNRHPHM-NITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPM---SDI-SEFSPGVD   77 (337)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEE---SSG-GGTCTTCS
T ss_pred             CceEEEEECCCChHHHHHHHHHHhCCCC-cEEEEEecCchhhcCCchHHhCccccCccceeEecc---CCH-HHHhcCCC
Confidence            4789999999999999999988886544 677665543   344322 211 1100  1122211   023 345 8999


Q ss_pred             EEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022263           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus        99 iVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                      +||++.+.                ..-+++++.+.+.  .+.+|-.|.+
T Consensus        78 vvf~a~p~----------------~~s~~~~~~~~~~--g~~vIDlSa~  108 (337)
T 3dr3_A           78 VVFLATAH----------------EVSHDLAPQFLEA--GCVVFDLSGA  108 (337)
T ss_dssp             EEEECSCH----------------HHHHHHHHHHHHT--TCEEEECSST
T ss_pred             EEEECCCh----------------HHHHHHHHHHHHC--CCEEEEcCCc
Confidence            99998541                2345555555443  4566666665

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=96.73  E-value=0.0063  Score=53.70  Aligned_cols=125  Identities=15%  Similarity=0.179  Sum_probs=72.7

Q ss_pred             cCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHHHHhccccCCCcEEEEec-CCc---ccc
Q 022263           20 GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG-NDQ---LGQ   92 (300)
Q Consensus        20 ~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-t~d---~~~   92 (300)
                      .+.....+.+++.|+||+|.+|.+++..|+..|.  ++++.|.+..   +....++....  ..+..+.. -+|   .++
T Consensus        10 ~~~~~~l~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~   85 (270)
T 3is3_A           10 TYIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVK   85 (270)
T ss_dssp             -CCTTCCTTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHH
T ss_pred             ccCCCCcCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHH
Confidence            3445555566899999999999999999999997  8888887542   11222333211  12222211 112   112


Q ss_pred             c-------cCCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 022263           93 A-------LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (300)
Q Consensus        93 a-------~~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (300)
                      .       +...|++|..||......   .+   -...+..|+.-...+.+.+.++- ..+.+|+++...
T Consensus        86 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  155 (270)
T 3is3_A           86 LFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT  155 (270)
T ss_dssp             HHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence            2       237899999999753211   12   22345667665556666655553 356666665433

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=96.73  E-value=0.0014  Score=59.80  Aligned_cols=91  Identities=21%  Similarity=0.223  Sum_probs=59.9

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      .....++|+|||. |.+|..++..+...|.  +|..+|.......      .      .    ..++++.+++||+|+++
T Consensus       140 ~~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~------~------~----~~~l~ell~~aDvV~l~  200 (311)
T 2cuk_A          140 LDLQGLTLGLVGM-GRIGQAVAKRALAFGM--RVVYHARTPKPLP------Y------P----FLSLEELLKEADVVSLH  200 (311)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSS------S------C----BCCHHHHHHHCSEEEEC
T ss_pred             cCCCCCEEEEEEE-CHHHHHHHHHHHHCCC--EEEEECCCCcccc------c------c----cCCHHHHHhhCCEEEEe
Confidence            3456679999995 9999999999988886  8999998653221      0      0    12556788999999998


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ....  + .++ .++  |.       +.+....|++++|+++.
T Consensus       201 ~p~~--~-~t~-~li--~~-------~~l~~mk~ga~lin~sr  230 (311)
T 2cuk_A          201 TPLT--P-ETH-RLL--NR-------ERLFAMKRGAILLNTAR  230 (311)
T ss_dssp             CCCC--T-TTT-TCB--CH-------HHHTTSCTTCEEEECSC
T ss_pred             CCCC--h-HHH-hhc--CH-------HHHhhCCCCcEEEECCC
Confidence            5321  1 111 122  11       12233457889988854

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=96.73  E-value=0.0015  Score=60.15  Aligned_cols=101  Identities=18%  Similarity=0.201  Sum_probs=65.0

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc-ccHHHHhccccCCCcEEEEecCCccccccCCCCEEE
Q 022263           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        23 ~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      ......++|+|||. |.+|+.+|..+...|.  +|..+|.... .....++       .+..    .++++.++.||+|+
T Consensus       140 ~~~l~g~tvGIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~-------g~~~----~~l~ell~~aDvV~  205 (330)
T 4e5n_A          140 GTGLDNATVGFLGM-GAIGLAMADRLQGWGA--TLQYHEAKALDTQTEQRL-------GLRQ----VACSELFASSDFIL  205 (330)
T ss_dssp             CCCSTTCEEEEECC-SHHHHHHHHHTTTSCC--EEEEECSSCCCHHHHHHH-------TEEE----CCHHHHHHHCSEEE
T ss_pred             CCccCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCCCCcHhHHHhc-------Ccee----CCHHHHHhhCCEEE
Confidence            34456689999995 9999999999887777  8999998652 2222222       1221    25678899999999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCcc
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNS  150 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d~  150 (300)
                      ++.-..  + .++. ++  |.       +.+....|++++|+++  .++|.
T Consensus       206 l~~P~t--~-~t~~-li--~~-------~~l~~mk~gailIN~arg~~vd~  243 (330)
T 4e5n_A          206 LALPLN--A-DTLH-LV--NA-------ELLALVRPGALLVNPCRGSVVDE  243 (330)
T ss_dssp             ECCCCS--T-TTTT-CB--CH-------HHHTTSCTTEEEEECSCGGGBCH
T ss_pred             EcCCCC--H-HHHH-Hh--CH-------HHHhhCCCCcEEEECCCCchhCH
Confidence            985321  1 1211 12  21       2344445899999985  45663

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.73  E-value=0.0019  Score=59.13  Aligned_cols=97  Identities=26%  Similarity=0.332  Sum_probs=62.2

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec-CCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEE
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~-~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      .....++|+|||. |.+|..++..+...|.  +|+.+|. ......+.++       .+..   ..++++.+++||+|++
T Consensus       142 ~~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~-------g~~~---~~~l~ell~~aDvVil  208 (320)
T 1gdh_A          142 EKLDNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASY-------QATF---HDSLDSLLSVSQFFSL  208 (320)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHH-------TCEE---CSSHHHHHHHCSEEEE
T ss_pred             cCCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcChhhhhhc-------CcEE---cCCHHHHHhhCCEEEE
Confidence            3456679999995 9999999999988776  8999998 6643222211       1121   1356678899999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +....  +. ++ .++  |    .   ..+....|++++|+++.
T Consensus       209 ~~p~~--~~-t~-~~i--~----~---~~l~~mk~gailIn~ar  239 (320)
T 1gdh_A          209 NAPST--PE-TR-YFF--N----K---ATIKSLPQGAIVVNTAR  239 (320)
T ss_dssp             CCCCC--TT-TT-TCB--S----H---HHHTTSCTTEEEEECSC
T ss_pred             eccCc--hH-HH-hhc--C----H---HHHhhCCCCcEEEECCC
Confidence            85321  11 11 122  1    1   12333457899988854

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.72  E-value=0.015  Score=50.98  Aligned_cols=115  Identities=23%  Similarity=0.303  Sum_probs=66.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc-------c
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA-------L   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~   94 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++...  ....++.... ...+..+.. -+|   .+++       +
T Consensus        10 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (262)
T 3pk0_A           10 GRSVVVTGGTKGIGRGIATVFARAGA--NVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDRAQCDALAGRAVEEF   86 (262)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            35799999999999999999999997  89999986532  2233443321 113333221 112   1222       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Ccc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|..||......   .+.   ...+..|+.    +.+...+.+.+.. .+.+|+++.
T Consensus        87 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS  147 (262)
T 3pk0_A           87 GGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASG-SGRVVLTSS  147 (262)
T ss_dssp             SCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHS-SCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEec
Confidence            38999999999753211   121   223445544    4455555555444 455565654

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=96.72  E-value=0.0058  Score=56.59  Aligned_cols=70  Identities=19%  Similarity=0.317  Sum_probs=46.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      +||+|+||+|.+|..+...|..+++ ..|+.++...+..|+...+..    ..+.... . + .+.++++|+||++.+
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~----~~~~~~~-~-~-~~~~~~~Dvvf~a~~   72 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRG----QEIEVED-A-E-TADPSGLDIALFSAG   72 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETT----EEEEEEE-T-T-TSCCTTCSEEEECSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecC----CceEEEe-C-C-HHHhccCCEEEECCC
Confidence            6999999999999999988888742 237888876554444332221    1222211 1 2 246789999999876

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=96.72  E-value=0.0054  Score=53.54  Aligned_cols=111  Identities=19%  Similarity=0.193  Sum_probs=65.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec-CCc---cccc-------
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG-NDQ---LGQA-------   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-t~d---~~~a-------   93 (300)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++.....  ..++.     ..+..+.. -+|   .+++       
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELG-----ERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  8999998643211  12221     12222211 011   1122       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~---g~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +...|++|.+||.....   ..+   ....+..|..    ..+.+.+.+++..  +.+|+++.
T Consensus        78 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS  138 (253)
T 1hxh_A           78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMAS  138 (253)
T ss_dssp             HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcc
Confidence            23579999999975321   112   1233455543    5566666665543  67777764

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=96.71  E-value=0.021  Score=52.61  Aligned_cols=118  Identities=19%  Similarity=0.233  Sum_probs=69.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---------cHHHHhccccCCCcEEEEec-CCc---cccc-
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---------GVAADVGHINTRSEVAGYMG-NDQ---LGQA-   93 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---------g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-   93 (300)
                      .+.+.|+||+|.+|.+++..|++.|.  +|++.|++...         ....++....  ..+..+.. -+|   .+++ 
T Consensus        45 gk~vlVTGas~GIG~aia~~La~~Ga--~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~  120 (346)
T 3kvo_A           45 GCTVFITGASRGIGKAIALKAAKDGA--NIVIAAKTAQPHPKLLGTIYTAAEEIEAVG--GKALPCIVDVRDEQQISAAV  120 (346)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHH
T ss_pred             CCEEEEeCCChHHHHHHHHHHHHCCC--EEEEEECChhhhhhhHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHH
Confidence            45799999999999999999999987  89999986532         1122232211  12222211 112   1122 


Q ss_pred             ------cCCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHHHHHHHHHHhh---CCCeEEEEecCCCc
Q 022263           94 ------LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVN  149 (300)
Q Consensus        94 ------~~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d  149 (300)
                            +...|++|..||......   .+   -...+..|+.-...+.+.+..+   ...+.||++|.+..
T Consensus       121 ~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~  191 (346)
T 3kvo_A          121 EKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLN  191 (346)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCC
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
Confidence                  238999999999743211   11   1234566665554444444332   34567888876654

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=96.70  E-value=0.01  Score=51.29  Aligned_cols=112  Identities=13%  Similarity=0.099  Sum_probs=62.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---cccc-------c
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQA-------L   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~   94 (300)
                      ++++.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++..     .+..+.. -+|   .++.       +
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   75 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH--QVSMMGRRYQRLQQQELLLGN-----AVIGIVADLAHHEDVDVAFAAAVEWG   75 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcC-----CceEEECCCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999987  899999865321  1222211     1222211 111   1112       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---chhhhhhhHHHHHHHHHHHHhh--CCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY--CPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~~--~p~a~viv~tN  146 (300)
                      ...|++|..||.....   ..+   -...+..|+.-...+.+.+...  ...+.+|+++.
T Consensus        76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS  135 (235)
T 3l6e_A           76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLS  135 (235)
T ss_dssp             CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence            4689999999974321   112   2234556665554444443332  12346666654

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.70  E-value=0.0057  Score=53.59  Aligned_cols=115  Identities=10%  Similarity=0.098  Sum_probs=65.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---ccccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQAL-------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a~-------   94 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++.... ...+..+.. -+|   .++++       
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (263)
T 3ai3_A            7 GKVAVITGSSSGIGLAIAEGFAKEGA--HIVLVARQVDRLHEAARSLKEKF-GVRVLEVAVDVATPEGVDAVVESVRSSF   83 (263)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999987  899999864321  122232110 112222211 112   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCcc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .+.|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.+|+++.
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS  144 (263)
T 3ai3_A           84 GGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG-GGAIIHNAS  144 (263)
T ss_dssp             SSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECc
Confidence            3799999999975321   1121   223344543    4455555555443 466666654

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=96.70  E-value=0.0026  Score=56.05  Aligned_cols=111  Identities=19%  Similarity=0.199  Sum_probs=62.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-------HHHhccccCCCcEEEEecCCccccccCCCCEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-------AADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-------~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiV  100 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++.....       ..|+.+..   .+...  -....+.+...|++
T Consensus        28 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~Dv~d~~---~v~~~--~~~~~~~~g~iD~l  100 (260)
T 3un1_A           28 QKVVVITGASQGIGAGLVRAYRDRNY--RVVATSRSIKPSADPDIHTVAGDISKPE---TADRI--VREGIERFGRIDSL  100 (260)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCCCCSSTTEEEEESCTTSHH---HHHHH--HHHHHHHHSCCCEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhhcccCceEEEEccCCCHH---HHHHH--HHHHHHHCCCCCEE
Confidence            34799999999999999999999997  8999998643211       11111110   00000  00011223489999


Q ss_pred             EEcCCCCCCCC---Cc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263          101 IIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       101 Ii~ag~~~~~g---~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      |.+||......   .+   -...+..|+.-    .+...+.+.+. ..+.+|+++.
T Consensus       101 v~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS  155 (260)
T 3un1_A          101 VNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQ-GSGHIVSITT  155 (260)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEEec
Confidence            99999753221   11   12334455543    44444445544 3456666643

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=96.70  E-value=0.0027  Score=55.35  Aligned_cols=114  Identities=18%  Similarity=0.200  Sum_probs=64.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-----HHHhccccCCCcEEEEecCCccccccCCCCEEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----AADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-----~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++.....     ..|+.+..   .+...  -....+.+...|++|.
T Consensus        15 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~D~~~~~---~~~~~--~~~~~~~~g~id~lv~   87 (247)
T 1uzm_A           15 SRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSD---AVDRA--FTAVEEHQGPVEVLVS   87 (247)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHH---HHHHH--HHHHHHHHSSCSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHhcCeeccCCCHH---HHHHH--HHHHHHHcCCCCEEEE
Confidence            45799999999999999999999987  8999998643211     11222110   00000  0011122346899999


Q ss_pred             cCCCCCCC---CCc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          103 PAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       103 ~ag~~~~~---g~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      .||.....   ..+   ....+..|..-    .+...+.+++. ..+.+|+++....
T Consensus        88 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~  143 (247)
T 1uzm_A           88 NAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN-KFGRMIFIGSVSG  143 (247)
T ss_dssp             ECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCCC
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEECCHhh
Confidence            99975321   111   22344455543    34444444433 3567777765443

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=96.69  E-value=0.0022  Score=59.90  Aligned_cols=71  Identities=21%  Similarity=0.389  Sum_probs=47.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ++||+|+||+|.+|..+...|...++ ..||.++...+..|+...+...    .+....  .+ .++++++|+||++.|
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~----~~~~~~--~~-~~~~~~~Dvvf~a~~   73 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQ----DITIEE--TT-ETAFEGVDIALFSAG   73 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTE----EEEEEE--CC-TTTTTTCSEEEECSC
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCC----CceEee--CC-HHHhcCCCEEEECCC
Confidence            37999999999999999998888643 3478888765544443322211    122211  12 245789999999876

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=96.68  E-value=0.003  Score=55.08  Aligned_cols=106  Identities=21%  Similarity=0.274  Sum_probs=62.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc---cccc-------cCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQA-------LED   96 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~~~   96 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++....      ..  .  +..+.. -+|   .+++       +..
T Consensus         7 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~------~~--~--~~~~~~D~~d~~~~~~~~~~~~~~~g~   74 (250)
T 2fwm_X            7 GKNVWVTGAGKGIGYATALAFVEAGA--KVTGFDQAFTQE------QY--P--FATEVMDVADAAQVAQVCQRLLAETER   74 (250)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCCCSS------CC--S--SEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCchhhh------cC--C--ceEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            35899999999999999999999987  899999864310      00  0  111100 011   1222       347


Q ss_pred             CCEEEEcCCCCCCC---CCc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           97 SDVVIIPAGVPRKP---GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        97 aDiVIi~ag~~~~~---g~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .|++|..||.....   ..+   ..+.+..|+.    +.+...+.+++.. .+.+|+++.
T Consensus        75 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS  133 (250)
T 2fwm_X           75 LDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQR-GGAIVTVAS  133 (250)
T ss_dssp             CCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcC-CCEEEEECc
Confidence            99999999975321   112   1223444544    4455555555554 455666653

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.67  E-value=0.014  Score=51.66  Aligned_cols=114  Identities=18%  Similarity=0.162  Sum_probs=65.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---cccc-------cC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQA-------LE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~~   95 (300)
                      +++.|+||+|.+|.+++..|++.|.  +|++.|+++...  ...++....  ..+..+.. -+|   .+++       +.
T Consensus        23 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   98 (277)
T 2rhc_B           23 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG   98 (277)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999987  899999864321  122332211  12222211 112   1122       33


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHHHHHHHHHHhh-----CCCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY-----CPNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~-----~p~a~viv~tN  146 (300)
                      ..|++|..||......   .+   ..+.+..|+.-...+.+.+.+.     ...+.||+++.
T Consensus        99 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS  160 (277)
T 2rhc_B           99 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIAS  160 (277)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECc
Confidence            7999999999753211   11   1234555665555555554332     13466776654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=96.67  E-value=0.022  Score=50.45  Aligned_cols=114  Identities=16%  Similarity=0.174  Sum_probs=66.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---ccccc------C
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQAL------E   95 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a~------~   95 (300)
                      .+++.|+||+|.+|.+++..|++.|.  +|++.|++...  ....++....  ..+..+.. -+|   .++.+      .
T Consensus        33 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~g  108 (275)
T 4imr_A           33 GRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEAIA  108 (275)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            35789999999999999999999997  89999996532  2223333221  12222211 111   11222      3


Q ss_pred             CCCEEEEcCCCCCCCC---Ccc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ..|++|..||......   .+.   ...+..|+.    +.+...+.+.+. ..+.||+++.
T Consensus       109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS  168 (275)
T 4imr_A          109 PVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVAR-KWGRVVSIGS  168 (275)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECC
Confidence            7899999999753221   121   223444543    455555555554 3566777654

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.66  E-value=0.0083  Score=52.53  Aligned_cols=115  Identities=20%  Similarity=0.194  Sum_probs=66.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc-------
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA-------   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------   93 (300)
                      +.+++.|+||+|.+|.+++..|++.|.  +|++.|++...  ....++.+..  ..+..+.. -+|   .++.       
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~   86 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQ   86 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999887  89999986532  2222333221  12222211 112   1122       


Q ss_pred             cCCCCEEEEcCCCCCCC--CCcc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRKP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +...|++|..||.....  ..+.   ...+..|+.    +.+...+.+.+. ..+.||+++.
T Consensus        87 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS  147 (256)
T 3gaf_A           87 FGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKA-GGGAILNISS  147 (256)
T ss_dssp             HSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcC
Confidence            23789999999975321  1221   223444544    444445555443 4567777764

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.66  E-value=0.0047  Score=57.22  Aligned_cols=101  Identities=23%  Similarity=0.298  Sum_probs=65.2

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEE
Q 022263           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        23 ~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      ..+...++|+|||. |.+|..+|..+...|.  +|..||......... .       ....   ..++++.+++||+|++
T Consensus       168 g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~-~-------g~~~---~~~l~ell~~sDvV~l  233 (345)
T 4g2n_A          168 GMGLTGRRLGIFGM-GRIGRAIATRARGFGL--AIHYHNRTRLSHALE-E-------GAIY---HDTLDSLLGASDIFLI  233 (345)
T ss_dssp             BCCCTTCEEEEESC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHH-T-------TCEE---CSSHHHHHHTCSEEEE
T ss_pred             ccccCCCEEEEEEe-ChhHHHHHHHHHHCCC--EEEEECCCCcchhhh-c-------CCeE---eCCHHHHHhhCCEEEE
Confidence            34556679999995 9999999999998787  899999865322211 1       1111   1367788999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCcc
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNS  150 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d~  150 (300)
                      +....  + +++ .++  |    .   +.+....|++++|+++  ..+|.
T Consensus       234 ~~Plt--~-~T~-~li--~----~---~~l~~mk~gailIN~aRG~~vde  270 (345)
T 4g2n_A          234 AAPGR--P-ELK-GFL--D----H---DRIAKIPEGAVVINISRGDLIND  270 (345)
T ss_dssp             CSCCC--G-GGT-TCB--C----H---HHHHHSCTTEEEEECSCGGGBCH
T ss_pred             ecCCC--H-HHH-HHh--C----H---HHHhhCCCCcEEEECCCCchhCH
Confidence            85321  1 111 122  2    1   2234445899999985  35563

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=96.65  E-value=0.011  Score=52.44  Aligned_cols=114  Identities=17%  Similarity=0.258  Sum_probs=65.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc-ccHHHHhccccCCCcEEEEec-CCccc---c------ccCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMG-NDQLG---Q------ALED   96 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~-t~d~~---~------a~~~   96 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|..+. .....++....  ..+..+.. -+|.+   +      .+..
T Consensus        31 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~g~  106 (273)
T 3uf0_A           31 GRTAVVTGAGSGIGRAIAHGYARAGA--HVLAWGRTDGVKEVADEIADGG--GSAEAVVADLADLEGAANVAEELAATRR  106 (273)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTHHHHHHHHHHTTT--CEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHhcCC
Confidence            45799999999999999999999997  8999995432 22223333221  12332211 11211   1      1247


Q ss_pred             CCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           97 SDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        97 aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .|++|..||......   .+   -...+..|+.    +.+.+.+.+.+.. .+.||+++.
T Consensus       107 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS  165 (273)
T 3uf0_A          107 VDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG-SGRIVTIAS  165 (273)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcc
Confidence            899999999753221   11   1223444544    4455555555544 466666654

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.65  E-value=0.0033  Score=58.39  Aligned_cols=100  Identities=20%  Similarity=0.274  Sum_probs=64.5

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      ....++|+|||. |.+|..+|..|...|.  +|..+|...... ...++       .+..   ..++++.+++||+|+++
T Consensus       161 ~l~gktvGIIG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~-------g~~~---~~~l~ell~~aDvV~l~  227 (351)
T 3jtm_A          161 DLEGKTIGTVGA-GRIGKLLLQRLKPFGC--NLLYHDRLQMAPELEKET-------GAKF---VEDLNEMLPKCDVIVIN  227 (351)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHGGGCC--EEEEECSSCCCHHHHHHH-------CCEE---CSCHHHHGGGCSEEEEC
T ss_pred             cccCCEEeEEEe-CHHHHHHHHHHHHCCC--EEEEeCCCccCHHHHHhC-------CCeE---cCCHHHHHhcCCEEEEC
Confidence            456679999995 9999999999988787  899999865322 22222       1121   23677889999999998


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCcc
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNS  150 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d~  150 (300)
                      ....  + .++ .++  |.    +   .+....|++++|+++  .++|.
T Consensus       228 ~Plt--~-~t~-~li--~~----~---~l~~mk~gailIN~aRG~~vde  263 (351)
T 3jtm_A          228 MPLT--E-KTR-GMF--NK----E---LIGKLKKGVLIVNNARGAIMER  263 (351)
T ss_dssp             SCCC--T-TTT-TCB--SH----H---HHHHSCTTEEEEECSCGGGBCH
T ss_pred             CCCC--H-HHH-Hhh--cH----H---HHhcCCCCCEEEECcCchhhCH
Confidence            6321  1 121 122  22    2   233345799999985  35553

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.65  E-value=0.0041  Score=56.25  Aligned_cols=95  Identities=22%  Similarity=0.306  Sum_probs=63.0

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ....++|+|||. |.+|..+|..|...|.  +|..||........           ...   ..++++.+++||+|+++.
T Consensus       119 ~l~g~tvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~-----------~~~---~~~l~ell~~aDiV~l~~  181 (290)
T 3gvx_A          119 LLYGKALGILGY-GGIGRRVAHLAKAFGM--RVIAYTRSSVDQNV-----------DVI---SESPADLFRQSDFVLIAI  181 (290)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSCCCTTC-----------SEE---CSSHHHHHHHCSEEEECC
T ss_pred             eeecchheeecc-CchhHHHHHHHHhhCc--EEEEEecccccccc-----------ccc---cCChHHHhhccCeEEEEe
Confidence            345679999995 9999999999998887  99999986532110           111   236778899999999986


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCc
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN  149 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d  149 (300)
                      ...  + .+|. ++  |    .   +.+....|++++|+++  .++|
T Consensus       182 P~t--~-~t~~-li--~----~---~~l~~mk~gailIN~aRG~~vd  215 (290)
T 3gvx_A          182 PLT--D-KTRG-MV--N----S---RLLANARKNLTIVNVARADVVS  215 (290)
T ss_dssp             CCC--T-TTTT-CB--S----H---HHHTTCCTTCEEEECSCGGGBC
T ss_pred             ecc--c-cchh-hh--h----H---HHHhhhhcCceEEEeehhcccC
Confidence            321  1 1221 11  1    1   2234445799999885  4555

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=96.64  E-value=0.0059  Score=53.12  Aligned_cols=116  Identities=16%  Similarity=0.191  Sum_probs=65.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEecC-Cc---ccc-------cc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGN-DQ---LGQ-------AL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t-~d---~~~-------a~   94 (300)
                      .++|.|+||+|.+|.+++..|++.|.  +|+++|++....  ...++.... ...+..+... +|   .++       .+
T Consensus        14 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   90 (265)
T 1h5q_A           14 NKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDADL   90 (265)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCcchhhHHHHHHHHHhc-CCeeEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999886  899999854321  122232111 1122222111 12   111       13


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|.+||......   .+   ....+..|+.    +.+.+.+.+.+....+.+|++|.
T Consensus        91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  152 (265)
T 1h5q_A           91 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS  152 (265)
T ss_dssp             CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence            45899999999753211   11   1223445554    34444444444444466776654

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=96.63  E-value=0.037  Score=44.18  Aligned_cols=85  Identities=12%  Similarity=0.110  Sum_probs=53.8

Q ss_pred             CCCceEEEEcCC---CChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEE
Q 022263           26 VPDRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        26 ~~~~KI~IIGaa---G~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      .++.+|+|||++   |.+|..++..|...|+  +|+-+|.+.  ..   +.      .+..+   .++.+..+++|++++
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~--~V~~vnp~~--~~---i~------G~~~~---~s~~el~~~vDlvii   75 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNPNY--DE---IE------GLKCY---RSVRELPKDVDVIVF   75 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTC--SE---ET------TEECB---SSGGGSCTTCCEEEE
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCC--EEEEeCCCC--Ce---EC------Ceeec---CCHHHhCCCCCEEEE
Confidence            356799999943   9999999999998887  655554432  11   11      22322   245555678999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEE
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN  142 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~vi  142 (300)
                      +..                .+.+.++++.+.+.+..++++
T Consensus        76 ~vp----------------~~~v~~v~~~~~~~g~~~i~~   99 (138)
T 1y81_A           76 VVP----------------PKVGLQVAKEAVEAGFKKLWF   99 (138)
T ss_dssp             CSC----------------HHHHHHHHHHHHHTTCCEEEE
T ss_pred             EeC----------------HHHHHHHHHHHHHcCCCEEEE
Confidence            842                244566666666666676554

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=96.63  E-value=0.0065  Score=53.55  Aligned_cols=34  Identities=18%  Similarity=0.306  Sum_probs=30.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec-CC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-AN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~-~~   64 (300)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|+ +.
T Consensus        12 k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~   46 (276)
T 1mxh_A           12 PAAVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSE   46 (276)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCh
Confidence            5799999999999999999999987  8999998 54

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=96.62  E-value=0.016  Score=52.01  Aligned_cols=116  Identities=16%  Similarity=0.222  Sum_probs=68.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc----------c----cHHHHhccccCCCcEEEEec-CCc--
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----------P----GVAADVGHINTRSEVAGYMG-NDQ--   89 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~----------~----g~~~dl~~~~~~~~v~~~~~-t~d--   89 (300)
                      +.+.+.|+||+|.+|.+++..|++.|.  .|+++|+++.          .    ....++....  ..+..+.. -+|  
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~  102 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRDFD  102 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCCHH
Confidence            445799999999999999999999997  8999998621          1    1111222211  12322211 112  


Q ss_pred             -cccc-------cCCCCEEEEcCCCCCCCC----Ccc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           90 -LGQA-------LEDSDVVIIPAGVPRKPG----MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        90 -~~~a-------~~~aDiVIi~ag~~~~~g----~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                       .+++       +...|++|..||......    .+.   ...+..|+.    +.+.+.+.+.+....+.||++|.
T Consensus       103 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS  178 (299)
T 3t7c_A          103 AMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSS  178 (299)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence             1122       247999999999753221    121   224445543    45555566665555677777764

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.62  E-value=0.02  Score=51.09  Aligned_cols=116  Identities=12%  Similarity=0.137  Sum_probs=69.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHH-hccccCCCcEEEEec-CCc---cccc------
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAAD-VGHINTRSEVAGYMG-NDQ---LGQA------   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~d-l~~~~~~~~v~~~~~-t~d---~~~a------   93 (300)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++...  ....+ +...  ...+..+.. -+|   .+++      
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~  121 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKE--GVKCVLLPGDLSDEQHCKDIVQETVR  121 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTT--TCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999987  89999986531  11111 2211  112332211 112   1122      


Q ss_pred             -cCCCCEEEEcCCCCCCCC----Cc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263           94 -LEDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (300)
Q Consensus        94 -~~~aDiVIi~ag~~~~~g----~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (300)
                       +...|++|..||.....+    .+   -...+..|+.-...+.+.+..+- ..+.||+++.
T Consensus       122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS  183 (291)
T 3ijr_A          122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS  183 (291)
T ss_dssp             HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence             237899999998643221    11   23356667776667777766553 3556666653

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.61  E-value=0.01  Score=52.57  Aligned_cols=116  Identities=17%  Similarity=0.238  Sum_probs=68.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHHHHhccccCCCcEEEEec-CCc---ccccc-----
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG-NDQ---LGQAL-----   94 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a~-----   94 (300)
                      +.+++.|+||+|.+|.+++..|+..|.  ++++.|.+..   +....++....  ..+..+.. -+|   .++++     
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  105 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVE  105 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999987  8999877542   12222333221  12222211 112   22223     


Q ss_pred             --CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263           95 --EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (300)
Q Consensus        95 --~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (300)
                        ...|++|..||......   .+   ....+..|+.-...+.+.+.+.- ..+.+|+++.
T Consensus       106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          106 ALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence              37899999999753221   11   22345566655555555555542 3566776654

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=96.61  E-value=0.0057  Score=53.52  Aligned_cols=114  Identities=14%  Similarity=0.139  Sum_probs=66.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cH--HHHhccccCCCcEEEEec-CCc---ccccc-------
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GV--AADVGHINTRSEVAGYMG-NDQ---LGQAL-------   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~--~~dl~~~~~~~~v~~~~~-t~d---~~~a~-------   94 (300)
                      ++|.|+||+|.+|.+++..|++.|.  +|++.|++... ..  ..++.... ...+..+.. -+|   .++++       
T Consensus         5 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~   81 (260)
T 1x1t_A            5 KVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHhcc-CCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            5799999999999999999999987  89999986532 11  12222110 112222211 112   12222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|..||......   .+   ....+..|+.    +.+.+.+.+++.. .+.+|++|.
T Consensus        82 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  142 (260)
T 1x1t_A           82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIAS  142 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECc
Confidence            37999999999753211   11   1233445554    5555666665543 466776654

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.61  E-value=0.0089  Score=51.84  Aligned_cols=112  Identities=18%  Similarity=0.179  Sum_probs=64.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCcc------ccccCCCCEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQL------GQALEDSDVV  100 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d~------~~a~~~aDiV  100 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++..+..  ++.+.  . .+..+.. -+|.      .+.+...|++
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~--~~~~~--~-~~~~~~~D~~~~~~~~~~~~~~~~id~l   78 (246)
T 2ag5_A            6 GKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESKLQ--ELEKY--P-GIQTRVLDVTKKKQIDQFANEVERLDVL   78 (246)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHG--GGGGS--T-TEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHhc--c-CceEEEeeCCCHHHHHHHHHHhCCCCEE
Confidence            35799999999999999999999987  8999998542211  11111  0 2222211 1121      1225688999


Q ss_pred             EEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCC
Q 022263          101 IIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus       101 Ii~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                      |..||......   .+   ....+..|..    +.+...+.+.+.. .+.+|+++..
T Consensus        79 v~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  134 (246)
T 2ag5_A           79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK-SGNIINMSSV  134 (246)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCS
T ss_pred             EECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEech
Confidence            99999753211   11   1223344544    3445555554443 4666666543

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=96.61  E-value=0.018  Score=51.48  Aligned_cols=116  Identities=20%  Similarity=0.182  Sum_probs=69.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc----HHHHhccccCCCcEEEEec-CCcc---c-------
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG----VAADVGHINTRSEVAGYMG-NDQL---G-------   91 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g----~~~dl~~~~~~~~v~~~~~-t~d~---~-------   91 (300)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|.+....    ....+....  ..+..+.. -+|.   +       
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~  123 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKAR  123 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence            345799999999999999999999997  899998853211    111122111  12222211 1121   1       


Q ss_pred             cccCCCCEEEEcCCCCCCCC----Cc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263           92 QALEDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (300)
Q Consensus        92 ~a~~~aDiVIi~ag~~~~~g----~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (300)
                      +.+...|++|..||.....+    .+   ....+..|+.-...+.+.+...- ..+.||+++.
T Consensus       124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS  186 (294)
T 3r3s_A          124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS  186 (294)
T ss_dssp             HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence            12347899999999743221    11   23356667776667777766654 3567777754

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=96.59  E-value=0.0076  Score=55.82  Aligned_cols=75  Identities=19%  Similarity=0.233  Sum_probs=43.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEE-ecCCcccHHHHhccccC--------CCcEEEEecCCccccccCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANTPGVAADVGHINT--------RSEVAGYMGNDQLGQALEDS   97 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~-D~~~~~g~~~dl~~~~~--------~~~v~~~~~t~d~~~a~~~a   97 (300)
                      +++||+|+||+|.+|..++..|...+.+ ||+.+ |.+...+...+-.+...        ...+...  ..|. ++++++
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~-~~~~~v   78 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYL-ELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIV--STNY-EDHKDV   78 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEE--CSSG-GGGTTC
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCc-EEEEEecChhhcCCCHHHhcCcccccccccCCceeEEe--eCCH-HHhcCC
Confidence            4579999998899999999888776543 66666 33322222222111100        0011211  1233 446899


Q ss_pred             CEEEEcCC
Q 022263           98 DVVIIPAG  105 (300)
Q Consensus        98 DiVIi~ag  105 (300)
                      |+||++.+
T Consensus        79 DvVf~atp   86 (350)
T 2ep5_A           79 DVVLSALP   86 (350)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999854

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.59  E-value=0.011  Score=50.94  Aligned_cols=109  Identities=19%  Similarity=0.232  Sum_probs=63.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cccc-------cccCCCCEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQLG-------QALEDSDVV  100 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d~~-------~a~~~aDiV  100 (300)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++..+ ...++. ..   .+.. ..+ .+.+       +.+.+.|++
T Consensus         3 k~vlVTGas~giG~~~a~~l~~~G~--~V~~~~r~~~~-~~~~~~-~~---~~~~-D~~~~~~~~~~~~~~~~~g~id~l   74 (239)
T 2ekp_A            3 RKALVTGGSRGIGRAIAEALVARGY--RVAIASRNPEE-AAQSLG-AV---PLPT-DLEKDDPKGLVKRALEALGGLHVL   74 (239)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHH-HHHHHT-CE---EEEC-CTTTSCHHHHHHHHHHHHTSCCEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHhhC-cE---EEec-CCchHHHHHHHHHHHHHcCCCCEE
Confidence            4799999999999999999999987  89999987543 222221 00   0110 000 1111       224589999


Q ss_pred             EEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263          101 IIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       101 Ii~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      |..||......   .+   ..+.+..|..    +.+.+.+.+.+.. .+.+|+++.
T Consensus        75 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS  129 (239)
T 2ekp_A           75 VHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG-WGRVLFIGS  129 (239)
T ss_dssp             EECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECc
Confidence            99999753211   11   1223344443    4455555555543 456666654

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.59  E-value=0.0061  Score=54.00  Aligned_cols=114  Identities=18%  Similarity=0.231  Sum_probs=65.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc-------c
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA-------L   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~   94 (300)
                      .+.+.|+||+|.+|.+++..|+..|.  +|++.|++...  ....++.....  .+..+.. -+|   .++.       +
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (270)
T 3ftp_A           28 KQVAIVTGASRGIGRAIALELARRGA--MVIGTATTEAGAEGIGAAFKQAGL--EGRGAVLNVNDATAVDALVESTLKEF  103 (270)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHTC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            34789999999999999999999997  89999986532  22222322211  1111110 112   1222       3


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|..||......   .+   ....+..|+.    +.+.+.+.+.+. ..+.||+++.
T Consensus       104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS  164 (270)
T 3ftp_A          104 GALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKA-RGGRIVNITS  164 (270)
T ss_dssp             SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECc
Confidence            37999999999753211   12   1223445554    344444555444 3566776653

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.58  E-value=0.015  Score=51.00  Aligned_cols=117  Identities=13%  Similarity=0.094  Sum_probs=66.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCcc---c-------ccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQL---G-------QAL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d~---~-------~a~   94 (300)
                      .+++.|+||+|.+|.+++..|+..|.  .|++.|++...  ....++........+..+.. -+|.   +       +.+
T Consensus         8 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            8 EAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999987  89999986532  22233332111111322211 1121   1       123


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---chhhhhhhHHHHHHHHHHHHhh---CCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (300)
                      ...|++|..||.....   ..+   -...+..|+.-...+.+.+..+   ...+.||+++.
T Consensus        86 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS  146 (265)
T 3lf2_A           86 GCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNS  146 (265)
T ss_dssp             CSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECC
Confidence            4789999999974321   122   1234556665444444444332   23566776653

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=96.58  E-value=0.013  Score=52.12  Aligned_cols=112  Identities=21%  Similarity=0.193  Sum_probs=65.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCcc---c-------cc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQL---G-------QA   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d~---~-------~a   93 (300)
                      +.+++.|+||+|.+|.+++..|++.|.  +|++.|++....  ...++..     .+..+.. -+|.   +       +.
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKIGC-----GAAACRVDVSDEQQIIAMVDACVAA  100 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHCS-----SCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcCC-----cceEEEecCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999997  899999865321  1222211     1111111 1121   1       12


Q ss_pred             cCCCCEEEEcCCCCCCC---CCc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~---g~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +...|++|..||.....   ..+   -...+..|+.-    .+.+.+.+.+. ..+.||+++.
T Consensus       101 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS  162 (277)
T 3gvc_A          101 FGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIER-GGGAIVNLSS  162 (277)
T ss_dssp             HSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence            34789999999975321   112   22344556554    44455555443 4567777764

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.58  E-value=0.0098  Score=52.87  Aligned_cols=116  Identities=16%  Similarity=0.202  Sum_probs=65.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHHHHhccccCCCcEEEEec-CCc---ccccc-------
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG-NDQ---LGQAL-------   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a~-------   94 (300)
                      +.+.|+||+|.+|.+++..|+..|.  +|++.|....   .....++....  ..+..+.. -+|   .++++       
T Consensus        30 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  105 (280)
T 4da9_A           30 PVAIVTGGRRGIGLGIARALAASGF--DIAITGIGDAEGVAPVIAELSGLG--ARVIFLRADLADLSSHQATVDAVVAEF  105 (280)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCHHHHHHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999987  8999997432   11222333211  12322211 112   22223       


Q ss_pred             CCCCEEEEcCCCCC---CC--CCc---chhhhhhhHH----HHHHHHHHHHhhCC--CeEEEEecCCC
Q 022263           95 EDSDVVIIPAGVPR---KP--GMT---RDDLFNINAG----IVKDLCSAIAKYCP--NAIVNMISNPV  148 (300)
Q Consensus        95 ~~aDiVIi~ag~~~---~~--g~~---r~dl~~~N~~----i~~~i~~~i~~~~p--~a~viv~tNP~  148 (300)
                      ...|++|..||...   .+  ..+   ....+..|+.    +.+.+.+.+.+...  .+.||++|.-.
T Consensus       106 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~  173 (280)
T 4da9_A          106 GRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVS  173 (280)
T ss_dssp             SCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-
T ss_pred             CCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchh
Confidence            37899999999731   11  111   2234455654    44566666665542  56777776433

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=96.57  E-value=0.0019  Score=59.84  Aligned_cols=101  Identities=18%  Similarity=0.315  Sum_probs=65.8

Q ss_pred             cCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCE
Q 022263           20 GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDV   99 (300)
Q Consensus        20 ~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDi   99 (300)
                      .+...+...++|+|||. |.+|+.+|..+...|.  +|..||.....    ....     .+..    .++++.+++||+
T Consensus       140 ~~~~~~l~gktvgIiGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~----~~~~-----~~~~----~~l~ell~~aDv  203 (343)
T 2yq5_A          140 NLISNEIYNLTVGLIGV-GHIGSAVAEIFSAMGA--KVIAYDVAYNP----EFEP-----FLTY----TDFDTVLKEADI  203 (343)
T ss_dssp             GGCBCCGGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCG----GGTT-----TCEE----CCHHHHHHHCSE
T ss_pred             CCCccccCCCeEEEEec-CHHHHHHHHHHhhCCC--EEEEECCChhh----hhhc-----cccc----cCHHHHHhcCCE
Confidence            34444455679999995 9999999999998887  99999986532    1111     1121    156788999999


Q ss_pred             EEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCc
Q 022263          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN  149 (300)
Q Consensus       100 VIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d  149 (300)
                      |+++....  + +++. ++  |.       +.+....|++++|+++  .++|
T Consensus       204 V~l~~Plt--~-~t~~-li--~~-------~~l~~mk~gailIN~aRg~~vd  242 (343)
T 2yq5_A          204 VSLHTPLF--P-STEN-MI--GE-------KQLKEMKKSAYLINCARGELVD  242 (343)
T ss_dssp             EEECCCCC--T-TTTT-CB--CH-------HHHHHSCTTCEEEECSCGGGBC
T ss_pred             EEEcCCCC--H-HHHH-Hh--hH-------HHHhhCCCCcEEEECCCChhhh
Confidence            99986322  1 1221 22  21       2234446899999885  3455

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=96.57  E-value=0.0034  Score=55.88  Aligned_cols=112  Identities=19%  Similarity=0.241  Sum_probs=64.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec-CCc---cccc-------
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG-NDQ---LGQA-------   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-t~d---~~~a-------   93 (300)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++.....  ..++..     .+..+.. -+|   .+++       
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~~~~   98 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA--YVVVADVNEDAAVRVANEIGS-----KAFGVRVDVSSAKDAESMVEKTTAK   98 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----ceEEEEecCCCHHHHHHHHHHHHHH
Confidence            445789999999999999999999987  8999998643211  111111     1221111 111   1122       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~---g~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +...|++|..||.....   ..+   ....+..|+.-    .+.+.+.+++. ..+.||++|.
T Consensus        99 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS  160 (277)
T 4dqx_A           99 WGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRN-GGGSIINTTS  160 (277)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT-TCEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEECc
Confidence            23789999999974321   111   12234456544    34444444433 3567777764

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.56  E-value=0.024  Score=49.35  Aligned_cols=116  Identities=20%  Similarity=0.229  Sum_probs=65.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-C--Cc---cc-------
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-N--DQ---LG-------   91 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t--~d---~~-------   91 (300)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++...  ....++...... .+..+.. -  +|   .+       
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~   87 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGA--TVILLGRNEEKLRQVASHINEETGR-QPQWFILDLLTCTSENCQQLAQRIA   87 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHSC-CCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCC-CceEEEEecccCCHHHHHHHHHHHH
Confidence            345899999999999999999999987  89999986532  122223221110 1111110 0  11   11       


Q ss_pred             cccCCCCEEEEcCCCCCC--C--CCcc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           92 QALEDSDVVIIPAGVPRK--P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        92 ~a~~~aDiVIi~ag~~~~--~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +.+...|++|..||....  +  ..+.   ...+..|+.    +.+.+.+.+++. ..+.+|+++.
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS  152 (252)
T 3f1l_A           88 VNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKS-DAGSLVFTSS  152 (252)
T ss_dssp             HHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTS-SSCEEEEECC
T ss_pred             HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHC-CCCEEEEECC
Confidence            123478999999997321  2  1221   223455544    444555555443 3556666654

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.56  E-value=0.023  Score=49.57  Aligned_cols=114  Identities=12%  Similarity=0.103  Sum_probs=67.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---cccccC------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQALE------   95 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a~~------   95 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++....  ..+..+.. -+|   .+++++      
T Consensus         7 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~g   82 (252)
T 3h7a_A            7 NATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAHA   82 (252)
T ss_dssp             SCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence            35799999999999999999999997  899999965322  223333221  12332211 112   222232      


Q ss_pred             CCCEEEEcCCCCCCCC---Ccc---hhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRKPG---MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ..|++|..||......   .+.   ...+..|+    .+.+.+.+.+.+.. .+.+|++|.
T Consensus        83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  142 (252)
T 3h7a_A           83 PLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG-QGKIFFTGA  142 (252)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEE
T ss_pred             CceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECC
Confidence            6799999999754211   111   22344453    34555666666554 466666653

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.56  E-value=0.025  Score=49.94  Aligned_cols=115  Identities=23%  Similarity=0.267  Sum_probs=68.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC-------------c--ccHHHHhccccCCCcEEEEec-CCcc-
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-------------T--PGVAADVGHINTRSEVAGYMG-NDQL-   90 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~-------------~--~g~~~dl~~~~~~~~v~~~~~-t~d~-   90 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.             .  .....++...  ...+..+.. -+|. 
T Consensus        11 ~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~   86 (277)
T 3tsc_A           11 GRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA--NRRIVAAVVDTRDFD   86 (277)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCCCHH
Confidence            35799999999999999999999997  899999831             1  1111122211  112322211 1121 


Q ss_pred             --cc-------ccCCCCEEEEcCCCCCCCC---Ccc---hhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263           91 --GQ-------ALEDSDVVIIPAGVPRKPG---MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        91 --~~-------a~~~aDiVIi~ag~~~~~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                        ++       .+...|++|..||......   .+.   ...+..|+    .+.+...+.+.+..+.+.||++|.
T Consensus        87 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS  161 (277)
T 3tsc_A           87 RLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISS  161 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence              11       2346899999999753321   121   22344453    356666777777766777887764

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.55  E-value=0.028  Score=50.36  Aligned_cols=116  Identities=22%  Similarity=0.282  Sum_probs=67.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCcc----------ccc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQL----------GQA   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d~----------~~a   93 (300)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++...  ....++.... ...+..+.. -+|.          .+.
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~  116 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA--NVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCADAARTVVDA  116 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999997  89999986532  2233443321 113333221 1121          122


Q ss_pred             cCCCCEEEEcCCCCCCCC---Ccc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +...|++|..||......   .+.   ...+..|+.    +.+...+.+.+... +.||+++.
T Consensus       117 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~iV~isS  178 (293)
T 3rih_A          117 FGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGR-GRVILTSS  178 (293)
T ss_dssp             HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSS-CEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEEeC
Confidence            347899999999743211   121   223445544    34445555555544 45555543

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=96.55  E-value=0.006  Score=55.34  Aligned_cols=116  Identities=15%  Similarity=0.239  Sum_probs=67.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc----------ccH----HHHhccccCCCcEEEEec-CCc---
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----------PGV----AADVGHINTRSEVAGYMG-NDQ---   89 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~----------~g~----~~dl~~~~~~~~v~~~~~-t~d---   89 (300)
                      .+++.|+||+|.+|.+++..|++.|.  +|+++|+++.          ...    ..++...  ...+..+.. -+|   
T Consensus        46 gk~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~  121 (317)
T 3oec_A           46 GKVAFITGAARGQGRTHAVRLAQDGA--DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ--GRRIIARQADVRDLAS  121 (317)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--eEEEEecccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHH
Confidence            34789999999999999999999997  8999997521          011    1111111  112322211 112   


Q ss_pred             cccc-------cCCCCEEEEcCCCCCCC---CCcc---hhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecCC
Q 022263           90 LGQA-------LEDSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus        90 ~~~a-------~~~aDiVIi~ag~~~~~---g~~r---~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                      .++.       +...|++|..||.....   ..+.   ...+..|+    .+.+.+.+.+.+....+.||+++..
T Consensus       122 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~  196 (317)
T 3oec_A          122 LQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSST  196 (317)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCG
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcH
Confidence            1122       23789999999975321   1121   22344454    3455666666666556777777653

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.55  E-value=0.01  Score=52.75  Aligned_cols=114  Identities=13%  Similarity=0.115  Sum_probs=66.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCcc---ccc-------cC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQL---GQA-------LE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-------~~   95 (300)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++...  ....++....  ..+..+.. -+|.   +++       +.
T Consensus        25 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           25 QTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999987  89999986532  2223333221  12332211 1121   112       23


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHHHHHHHHHHh-----hCCCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAK-----YCPNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~-----~~p~a~viv~tN  146 (300)
                      ..|++|..||......   .+   -.+.+..|+.-...+.+.+.+     ....+.||++|.
T Consensus       101 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS  162 (279)
T 3sju_A          101 PIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIAS  162 (279)
T ss_dssp             SCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECC
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECC
Confidence            7899999999753211   11   123445565554444444332     123467777764

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=96.55  E-value=0.0012  Score=60.31  Aligned_cols=94  Identities=16%  Similarity=0.169  Sum_probs=58.7

Q ss_pred             hhhhhhhccccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEe
Q 022263            6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM   85 (300)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~   85 (300)
                      |-..+|-|-.+..-+++.++ ...+|+|||+ |.+|...+..|....-+.+|.++|+++++..+.++.+.. ...+..  
T Consensus       100 lT~~RTaA~s~laa~~La~~-~~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~-g~~~~~--  174 (313)
T 3hdj_A          100 LTRKRTAACTVLAAGALARP-RSSVLGLFGA-GTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRC-GVPARM--  174 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHSCT-TCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHH-TSCEEE--
T ss_pred             hhhHHHHHHHHHHHHhhccC-CCcEEEEECc-cHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhc-CCeEEE--
Confidence            34444444444444444433 4468999995 999998888777532367999999984333444444321 112332  


Q ss_pred             cCCccccccCCCCEEEEcCCC
Q 022263           86 GNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        86 ~t~d~~~a~~~aDiVIi~ag~  106 (300)
                       . ++++++++||+||.+...
T Consensus       175 -~-~~~eav~~aDIVi~aT~s  193 (313)
T 3hdj_A          175 -A-APADIAAQADIVVTATRS  193 (313)
T ss_dssp             -C-CHHHHHHHCSEEEECCCC
T ss_pred             -e-CHHHHHhhCCEEEEccCC
Confidence             2 677899999999987543

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.55  E-value=0.029  Score=49.82  Aligned_cols=116  Identities=15%  Similarity=0.225  Sum_probs=66.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHHHHhccccCCCcEEEEec-CCc---ccc-------
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG-NDQ---LGQ-------   92 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-t~d---~~~-------   92 (300)
                      ..+++.|+||+|.+|.+++..|+..|.  +|++.|++..   +....++.... ...+..+.. -+|   .++       
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~  100 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGA--NIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIADMMAMVAD  100 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence            345789999999999999999999997  8999998432   12222332211 112332211 112   112       


Q ss_pred             ccCCCCEEEEcCCCCCCCC---Ccc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           93 ALEDSDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        93 a~~~aDiVIi~ag~~~~~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .+...|++|..||......   .+.   ...+..|+.    +.+...+.+.+.. .+.||+++.
T Consensus       101 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS  163 (281)
T 3v2h_A          101 RFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKG-WGRIINIAS  163 (281)
T ss_dssp             HTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECC
Confidence            2347899999999753221   111   223444544    4455555555543 466666654

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.54  E-value=0.0023  Score=59.51  Aligned_cols=101  Identities=18%  Similarity=0.231  Sum_probs=64.5

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      .....++|+|||. |.+|..+|..+...|.  +|..||.......   ....    .++.   ..++++.+++||+|+++
T Consensus       156 ~~l~g~tvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~---~~~~----g~~~---~~~l~ell~~aDiV~l~  222 (352)
T 3gg9_A          156 RVLKGQTLGIFGY-GKIGQLVAGYGRAFGM--NVLVWGRENSKER---ARAD----GFAV---AESKDALFEQSDVLSVH  222 (352)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSHHHHHH---HHHT----TCEE---CSSHHHHHHHCSEEEEC
T ss_pred             ccCCCCEEEEEeE-CHHHHHHHHHHHhCCC--EEEEECCCCCHHH---HHhc----CceE---eCCHHHHHhhCCEEEEe
Confidence            3456679999995 9999999999998887  8999997532111   1111    1222   23677889999999998


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCcc
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNS  150 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d~  150 (300)
                      .-..  + +++. ++  |.       +.+....|++++|+++  .++|.
T Consensus       223 ~Plt--~-~t~~-li--~~-------~~l~~mk~gailIN~aRg~~vd~  258 (352)
T 3gg9_A          223 LRLN--D-ETRS-II--TV-------ADLTRMKPTALFVNTSRAELVEE  258 (352)
T ss_dssp             CCCS--T-TTTT-CB--CH-------HHHTTSCTTCEEEECSCGGGBCT
T ss_pred             ccCc--H-HHHH-hh--CH-------HHHhhCCCCcEEEECCCchhhcH
Confidence            5321  1 1221 22  21       2234446899999986  45554

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=96.54  E-value=0.0039  Score=54.60  Aligned_cols=116  Identities=16%  Similarity=0.206  Sum_probs=68.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec-CCcc--cHHHHhccccCCCcEEEEecC-Cc---cccccC----
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTP--GVAADVGHINTRSEVAGYMGN-DQ---LGQALE----   95 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~-~~~~--g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~~----   95 (300)
                      +.++|.|+||+|.+|.+++..|++.|.  ++++.|. +...  ....++....  ..+..+.+. +|   ++++++    
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   95 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVS   95 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999987  8999987 3221  1122232211  122222111 12   223333    


Q ss_pred             ---CCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecC
Q 022263           96 ---DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISN  146 (300)
Q Consensus        96 ---~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tN  146 (300)
                         +.|+||.+||......   .+   ..+.+..|+.-...+.+.+.++.. .+.+|+++.
T Consensus        96 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS  156 (274)
T 1ja9_A           96 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS  156 (274)
T ss_dssp             HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcC
Confidence               7899999998753211   11   133456676666666666655521 256666653

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.53  E-value=0.0032  Score=55.57  Aligned_cols=115  Identities=15%  Similarity=0.123  Sum_probs=68.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec-CCc---ccccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG-NDQ---LGQAL-------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-t~d---~~~a~-------   94 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.....  ..++.     ..+..+.. -+|   .++++       
T Consensus         6 ~k~vlITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (263)
T 2a4k_A            6 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALE-----AEAIAVVADVSDPKAVEAVFAEALEEF   78 (263)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCC-----SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999987  8999998643211  11111     12222211 112   12222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCc
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (300)
                      ...|++|..||......   .+   ....+..|+.-...+.+.+.++- ..+.+|++|....
T Consensus        79 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  140 (263)
T 2a4k_A           79 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAG  140 (263)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTT
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchh
Confidence            35799999999753211   11   12345667766666666665543 1467777765443

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.53  E-value=0.0072  Score=53.54  Aligned_cols=115  Identities=13%  Similarity=0.192  Sum_probs=66.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEec-CCc---cccc-------
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQ---LGQA-------   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------   93 (300)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++..  .....++....  ..+..+.. -+|   .++.       
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA--RILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTSESEIIEAFARLDEQ  100 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999997  8999998643  22223333221  12222111 011   1222       


Q ss_pred             cCCCCEEEEcCCCCCCCC---Ccc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +...|++|..||......   .+.   ...+..|+.    +.+...+.+.+.. .+.||+++.
T Consensus       101 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iV~isS  162 (271)
T 4ibo_A          101 GIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRG-YGKIVNIGS  162 (271)
T ss_dssp             TCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence            237999999999753221   121   223445544    4455556555543 466666654

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=96.51  E-value=0.0068  Score=56.63  Aligned_cols=72  Identities=18%  Similarity=0.245  Sum_probs=44.0

Q ss_pred             CceEEEEcCCCChHHHHHH-HHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLAL-LMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~-~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |+||+|+||+|.+|..+.. .|.++++ .-+|+++..+. .|..  +.+... ..+.... ..+. +.++++|+||.+.|
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s-~G~~--v~~~~g-~~i~~~~-~~~~-~~~~~~DvVf~a~g   74 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ-LGQA--APSFGG-TTGTLQD-AFDL-EALKALDIIVTCQG   74 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSB--CCGGGT-CCCBCEE-TTCH-HHHHTCSEEEECSC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCC-CCCC--ccccCC-CceEEEe-cCCh-HHhcCCCEEEECCC
Confidence            5799999999999999998 5655543 34788886642 3331  111110 1122111 1233 34679999999876

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.50  E-value=0.011  Score=53.15  Aligned_cols=98  Identities=18%  Similarity=0.230  Sum_probs=63.4

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ....++|+|||+ |.+|..++..+...|.  +|..+|....+..  .+....    ..... ..++++.++++|+|+++.
T Consensus       152 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~~~-~~~l~~~l~~aDvVi~~~  221 (293)
T 3d4o_A          152 TIHGANVAVLGL-GRVGMSVARKFAALGA--KVKVGARESDLLA--RIAEMG----MEPFH-ISKAAQELRDVDVCINTI  221 (293)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHHH--HHHHTT----SEEEE-GGGHHHHTTTCSEEEECC
T ss_pred             CCCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHHCC----CeecC-hhhHHHHhcCCCEEEECC
Confidence            345679999995 9999999999988886  8999998643211  111111    11111 135667789999999986


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec-CCCcc
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS-NPVNS  150 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t-NP~d~  150 (300)
                      ..    +     ++  |.+       .+....|.+++++++ +|.++
T Consensus       222 p~----~-----~i--~~~-------~l~~mk~~~~lin~ar~~~~~  250 (293)
T 3d4o_A          222 PA----L-----VV--TAN-------VLAEMPSHTFVIDLASKPGGT  250 (293)
T ss_dssp             SS----C-----CB--CHH-------HHHHSCTTCEEEECSSTTCSB
T ss_pred             Ch----H-----Hh--CHH-------HHHhcCCCCEEEEecCCCCCC
Confidence            32    1     11  111       233345789999987 77664

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.50  E-value=0.0025  Score=59.19  Aligned_cols=78  Identities=15%  Similarity=0.134  Sum_probs=48.4

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +..|.||+|+||+|.+|..+...|...+.+ ||.++...+..|+..+-.+-.+...+...  ..|.++.++++|+||++.
T Consensus        10 ~~~~~~V~IvGAtG~vG~ellrlL~~hP~~-el~~l~S~~~aG~~~~~~~p~~~~~l~~~--~~~~~~~~~~~Dvvf~al   86 (351)
T 1vkn_A           10 HHHMIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENSILS--EFDPEKVSKNCDVLFTAL   86 (351)
T ss_dssp             --CCEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCCBCB--CCCHHHHHHHCSEEEECC
T ss_pred             ccceeEEEEECCCCHHHHHHHHHHHcCCCc-EEEEEeCcccccCChHHhChhhccCceEE--eCCHHHhhcCCCEEEECC
Confidence            346789999999999999999999988754 78888765544543330010000112211  113323237899999986


Q ss_pred             C
Q 022263          105 G  105 (300)
Q Consensus       105 g  105 (300)
                      +
T Consensus        87 p   87 (351)
T 1vkn_A           87 P   87 (351)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.48  E-value=0.0019  Score=56.50  Aligned_cols=152  Identities=17%  Similarity=0.220  Sum_probs=81.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---cccc-------c
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQA-------L   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~   94 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|+++...  ...++...     ...+.. -+|   .+++       +
T Consensus         9 gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~Dv~d~~~v~~~~~~~~~~~   81 (248)
T 3op4_A            9 GKVALVTGASRGIGKAIAELLAERGA--KVIGTATSESGAQAISDYLGDN-----GKGMALNVTNPESIEAVLKAITDEF   81 (248)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGG-----EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccc-----ceEEEEeCCCHHHHHHHHHHHHHHc
Confidence            35789999999999999999999997  899999865321  12222211     111110 111   1222       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCC
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~  164 (300)
                      ...|++|..||......   .+   -...+..|+.    +.+...+.+.+.. .+.+|+++.-..           ..+ 
T Consensus        82 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~-----------~~~-  148 (248)
T 3op4_A           82 GGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKR-QGRIINVGSVVG-----------TMG-  148 (248)
T ss_dssp             CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHH-----------HHC-
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcchhh-----------cCC-
Confidence            38999999999754221   11   1223445544    4455555555443 466666653111           111 


Q ss_pred             CCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       165 ~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                      .|..-.++.+..--..+.+.+|.+++  +..|++..+
T Consensus       149 ~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v  183 (248)
T 3op4_A          149 NAGQANYAAAKAGVIGFTKSMAREVA--SRGVTVNTV  183 (248)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHH--HhCeEEEEE
Confidence            33333333332222345666777763  345655444

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=96.46  E-value=0.01  Score=56.49  Aligned_cols=92  Identities=15%  Similarity=0.217  Sum_probs=61.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ...++|+|+|. |.+|..++..|...|.  +|+.+|+++.+.. +.+  +     ....    .++++++++||+|+.+.
T Consensus       209 L~GktVgIiG~-G~IG~~vA~~Lka~Ga--~Viv~D~~p~~a~~A~~--~-----G~~~----~sL~eal~~ADVVilt~  274 (436)
T 3h9u_A          209 IAGKTACVCGY-GDVGKGCAAALRGFGA--RVVVTEVDPINALQAAM--E-----GYQV----LLVEDVVEEAHIFVTTT  274 (436)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHH--T-----TCEE----CCHHHHTTTCSEEEECS
T ss_pred             ccCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCChhhhHHHHH--h-----CCee----cCHHHHHhhCCEEEECC
Confidence            34569999995 9999999999998886  8999998653221 111  1     1111    25678999999999865


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (300)
                      +..   +.     +.         .+.+....|++++++++++.
T Consensus       275 gt~---~i-----I~---------~e~l~~MK~gAIVINvgRg~  301 (436)
T 3h9u_A          275 GND---DI-----IT---------SEHFPRMRDDAIVCNIGHFD  301 (436)
T ss_dssp             SCS---CS-----BC---------TTTGGGCCTTEEEEECSSSG
T ss_pred             CCc---Cc-----cC---------HHHHhhcCCCcEEEEeCCCC
Confidence            432   11     11         01233345799999998764

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=96.46  E-value=0.0069  Score=53.07  Aligned_cols=113  Identities=19%  Similarity=0.206  Sum_probs=68.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec-CCcc----------cccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG-NDQL----------GQAL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-t~d~----------~~a~   94 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|+++....  ..++.     ..+..+.. -+|.          .+.+
T Consensus         8 gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            8 GKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEFG-----PRVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence            45799999999999999999999997  8999998643211  11221     12222111 1121          1223


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (300)
                      ...|++|..||......   .+   -...+..|+.-...+.+.+..+- ..+.+|+++..
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~  140 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSV  140 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence            47899999999754221   11   22345667666666666665542 25677777643

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.45  E-value=0.0036  Score=55.39  Aligned_cols=35  Identities=23%  Similarity=0.338  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|+++
T Consensus         9 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   43 (270)
T 1yde_A            9 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDE   43 (270)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45799999999999999999999987  899999864

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.45  E-value=0.0074  Score=53.37  Aligned_cols=112  Identities=15%  Similarity=0.220  Sum_probs=63.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH------HHHhccccCCCcEEEEecCCccccccCCCCEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV------AADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~------~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiV  100 (300)
                      +.++|.|+||+|.+|.+++..|++.|.  +|++.|++.....      ..|+.+..   .+...  -....+.+...|++
T Consensus        13 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~Dv~~~~---~v~~~--~~~~~~~~g~iD~l   85 (269)
T 3vtz_A           13 TDKVAIVTGGSSGIGLAVVDALVRYGA--KVVSVSLDEKSDVNVSDHFKIDVTNEE---EVKEA--VEKTTKKYGRIDIL   85 (269)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCC--CTTSSEEEECCTTCHH---HHHHH--HHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhccCceeEEEecCCCHH---HHHHH--HHHHHHHcCCCCEE
Confidence            445899999999999999999999987  8999998653211      01111110   00000  00111223489999


Q ss_pred             EEcCCCCCCCC---Ccc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263          101 IIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       101 Ii~ag~~~~~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      |..||......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++.
T Consensus        86 v~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS  140 (269)
T 3vtz_A           86 VNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIG-HGSIINIAS  140 (269)
T ss_dssp             EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             EECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECc
Confidence            99999753221   111   223444543    4455555555443 566666654

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.44  E-value=0.0089  Score=55.40  Aligned_cols=31  Identities=39%  Similarity=0.630  Sum_probs=25.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY   60 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~   60 (300)
                      +||+|+||+|.+|..++..|...+.+ ||+.+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~-ev~~i   39 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMF-ELTAL   39 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSE-EEEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCC-EEEEE
Confidence            69999998899999999888776533 67655

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.44  E-value=0.0054  Score=54.73  Aligned_cols=70  Identities=13%  Similarity=0.289  Sum_probs=50.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      +.+||+|||+ |.+|..++..|...+.  +|.++|++..+.+  ++.+..   .+..   .+++.+.++++|+||.+...
T Consensus       128 ~~~~v~iiGa-G~~g~aia~~L~~~g~--~V~v~~r~~~~~~--~l~~~~---g~~~---~~~~~~~~~~aDiVi~atp~  196 (275)
T 2hk9_A          128 KEKSILVLGA-GGASRAVIYALVKEGA--KVFLWNRTKEKAI--KLAQKF---PLEV---VNSPEEVIDKVQVIVNTTSV  196 (275)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSHHHHH--HHTTTS---CEEE---CSCGGGTGGGCSEEEECSST
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHcCC--EEEEEECCHHHHH--HHHHHc---CCee---ehhHHhhhcCCCEEEEeCCC
Confidence            3469999995 9999999999998886  8999998643322  333221   2332   22566788999999998765


Q ss_pred             C
Q 022263          107 P  107 (300)
Q Consensus       107 ~  107 (300)
                      +
T Consensus       197 ~  197 (275)
T 2hk9_A          197 G  197 (275)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=96.43  E-value=0.012  Score=52.28  Aligned_cols=113  Identities=17%  Similarity=0.109  Sum_probs=69.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc---ccccc---CCCCEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQAL---EDSDVV  100 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~---~~aDiV  100 (300)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++..+..  ++.+.. ...+..+... +|   .++++   ...|++
T Consensus        16 gk~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~--~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~l   90 (291)
T 3rd5_A           16 QRTVVITGANSGLGAVTARELARRGA--TVIMAVRDTRKGE--AAARTM-AGQVEVRELDLQDLSSVRRFADGVSGADVL   90 (291)
T ss_dssp             TCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHTTS-SSEEEEEECCTTCHHHHHHHHHTCCCEEEE
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHHh-cCCeeEEEcCCCCHHHHHHHHHhcCCCCEE
Confidence            45899999999999999999999987  8999998653222  111111 1123322211 12   22223   367999


Q ss_pred             EEcCCCCCCCC----CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          101 IIPAGVPRKPG----MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       101 Ii~ag~~~~~g----~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      |..||....+.    +.-...+..|..-...+.+.+.+.-.. .||++|.
T Consensus        91 v~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-riv~isS  139 (291)
T 3rd5_A           91 INNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-RVVTVSS  139 (291)
T ss_dssp             EECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-EEEEECC
T ss_pred             EECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heeEeec
Confidence            99999753221    123345677877777777777665433 4555543

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.43  E-value=0.0098  Score=52.62  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=30.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~   63 (300)
                      .+++.|+||+|.+|.+++..|++.|.  +|++.|++
T Consensus        10 ~k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~   43 (281)
T 3s55_A           10 GKTALITGGARGMGRSHAVALAEAGA--DIAICDRC   43 (281)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCC
Confidence            45799999999999999999999997  89999985

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=96.42  E-value=0.013  Score=51.03  Aligned_cols=110  Identities=12%  Similarity=0.158  Sum_probs=63.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec-CCc---ccc-------ccC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG-NDQ---LGQ-------ALE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-t~d---~~~-------a~~   95 (300)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.....  ..++..     .+..+.. -+|   .++       .+.
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g   73 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELGD-----NLYIAQLDVRNRAAIEEMLASLPAEWC   73 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHTSCTTTC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC-----ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            3688999999999999999999987  8999998643211  112211     1221111 011   111       234


Q ss_pred             CCCEEEEcCCCCC--CC--CCc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           96 DSDVVIIPAGVPR--KP--GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~--~~--g~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ..|++|..||...  .+  ..+   ....+..|+.    +.+.+.+.+.+.. .+.+|++|.
T Consensus        74 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS  134 (248)
T 3asu_A           74 NIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN-HGHIINIGS  134 (248)
T ss_dssp             CCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEcc
Confidence            7899999999752  11  111   1223445543    4555556565543 456666654

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=96.42  E-value=0.0097  Score=51.66  Aligned_cols=154  Identities=18%  Similarity=0.240  Sum_probs=81.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHHHHhccccCCCcEEEEec-CCc---ccccc-------
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG-NDQ---LGQAL-------   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a~-------   94 (300)
                      +++.|+||+|.+|.+++..|++.|.  ++++.|....   +....++....  ..+..+.. -+|   .++.+       
T Consensus         5 k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (246)
T 3osu_A            5 KSALVTGASRGIGRSIALQLAEEGY--NVAVNYAGSKEKAEAVVEEIKAKG--VDSFAIQANVADADEVKAMIKEVVSQF   80 (246)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999987  8888887432   12222333221  12222211 112   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCcc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCC
Q 022263           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~  164 (300)
                      ...|++|..||.....   ..+.   ...+..|+.    +.+...+.+.+.. .+.+|++|.-..           ..+ 
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~-----------~~~-  147 (246)
T 3osu_A           81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQR-SGAIINLSSVVG-----------AVG-  147 (246)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHH-----------HHC-
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcchhh-----------cCC-
Confidence            3789999999975321   1121   224455554    4445555555543 456666653111           111 


Q ss_pred             CCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       165 ~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                      .|..-.++.+..--..+.+.+|.+++  +..|++..+
T Consensus       148 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~vn~v  182 (246)
T 3osu_A          148 NPGQANYVATKAGVIGLTKSAARELA--SRGITVNAV  182 (246)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            33333333333223345666777663  345655544

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.42  E-value=0.0033  Score=57.87  Aligned_cols=68  Identities=26%  Similarity=0.390  Sum_probs=49.6

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      .....++|+|||. |.+|+.+|..+...|.  +|..+|.+.......++       .+..    .++++.+++||+|+++
T Consensus       142 ~~l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~-------g~~~----~~l~e~l~~aDiVil~  207 (333)
T 2d0i_A          142 ESLYGKKVGILGM-GAIGKAIARRLIPFGV--KLYYWSRHRKVNVEKEL-------KARY----MDIDELLEKSDIVILA  207 (333)
T ss_dssp             CCSTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCHHHHHHH-------TEEE----CCHHHHHHHCSEEEEC
T ss_pred             CCCCcCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhc-------Ccee----cCHHHHHhhCCEEEEc
Confidence            3456679999995 9999999999988787  89999986643211111       1221    2566778999999998


Q ss_pred             CC
Q 022263          104 AG  105 (300)
Q Consensus       104 ag  105 (300)
                      ..
T Consensus       208 vp  209 (333)
T 2d0i_A          208 LP  209 (333)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=96.41  E-value=0.013  Score=51.98  Aligned_cols=37  Identities=24%  Similarity=0.359  Sum_probs=32.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+.++|.|+||+|.+|..++..|+..|.  +|+++|++.
T Consensus        26 ~~~k~vlITGasggIG~~la~~l~~~G~--~V~~~~r~~   62 (286)
T 1xu9_A           26 LQGKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSK   62 (286)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            3456899999999999999999999987  899999864

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=96.41  E-value=0.0078  Score=52.79  Aligned_cols=115  Identities=15%  Similarity=0.098  Sum_probs=67.6

Q ss_pred             ceEEEEcCC--CChHHHHHHHHHhCCCCCEEEEEecCCc-ccHHHHhccccCCCcEEEEecCCc---cccc-------cC
Q 022263           29 RKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQ---LGQA-------LE   95 (300)
Q Consensus        29 ~KI~IIGaa--G~VG~~~a~~L~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d---~~~a-------~~   95 (300)
                      ++|.|+||+  |.+|.+++..|+..|.  +|++.|++.. .....++............. -+|   .+++       +.
T Consensus        10 k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D-~~~~~~v~~~~~~~~~~~g   86 (265)
T 1qsg_A           10 KRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCD-VAEDASIDTMFAELGKVWP   86 (265)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECC-TTCHHHHHHHHHHHHTTCS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHHhcCCcEEEEcc-CCCHHHHHHHHHHHHHHcC
Confidence            479999998  8999999999999987  8999998651 11222332211110111000 112   1122       23


Q ss_pred             CCCEEEEcCCCCCC-----C--C-Cc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~-----~--g-~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (300)
                      ..|++|..||....     +  . .+   ....+..|+.-...+.+.+.++- +.+.+|++|.
T Consensus        87 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  149 (265)
T 1qsg_A           87 KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSY  149 (265)
T ss_dssp             SEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             CCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcc
Confidence            68999999997532     1  0 11   22355667777777777766553 2467777764

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.40  E-value=0.012  Score=51.30  Aligned_cols=113  Identities=15%  Similarity=0.286  Sum_probs=66.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec-CCc---ccccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG-NDQ---LGQAL-------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-t~d---~~~a~-------   94 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|+++....  ..++..     .+..+.. -+|   .++.+       
T Consensus         9 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (261)
T 3n74_A            9 GKVALITGAGSGFGEGMAKRFAKGGA--KVVIVDRDKAGAERVAGEIGD-----AALAVAADISKEADVDAAVEAALSKF   81 (261)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC-----ceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999999987  8999998653211  122211     1222111 111   22222       


Q ss_pred             CCCCEEEEcCCCCCCCCC----cc---hhhhhhhH----HHHHHHHHHHHhhC---CCeEEEEecCC
Q 022263           95 EDSDVVIIPAGVPRKPGM----TR---DDLFNINA----GIVKDLCSAIAKYC---PNAIVNMISNP  147 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~----~r---~dl~~~N~----~i~~~i~~~i~~~~---p~a~viv~tNP  147 (300)
                      ...|++|.+||....++.    +.   ...+..|+    .+.+.+.+.+.+..   ..+.+++++..
T Consensus        82 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~  148 (261)
T 3n74_A           82 GKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVAST  148 (261)
T ss_dssp             SCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCT
T ss_pred             CCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCch
Confidence            378999999997542221    11   12333443    34566666666543   25667777643

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=96.39  E-value=0.012  Score=51.39  Aligned_cols=118  Identities=15%  Similarity=0.147  Sum_probs=66.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCC-CcEEEEec-CCcc---cc-------c
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTR-SEVAGYMG-NDQL---GQ-------A   93 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~-~~v~~~~~-t~d~---~~-------a   93 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++...  ....++...... ..+..+.. -+|.   ++       .
T Consensus         7 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            7 KGLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHHTC--EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            45799999999999999999999887  89999986532  222233221100 12222211 1121   11       1


Q ss_pred             cCCCCEEEEcCCCCCCCC--Ccc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCCC
Q 022263           94 LEDSDVVIIPAGVPRKPG--MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g--~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~  148 (300)
                      +...|++|..||......  .+.   ...+..|+.    +.+.+.+.+++. ..+.+|+++...
T Consensus        85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~  147 (250)
T 3nyw_A           85 YGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQ-KNGYIFNVASRA  147 (250)
T ss_dssp             HCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC--
T ss_pred             cCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEEccHH
Confidence            247899999999743221  111   223444543    445555555544 356677776533

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=96.38  E-value=0.013  Score=51.67  Aligned_cols=115  Identities=18%  Similarity=0.281  Sum_probs=63.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC-c--ccHHHHhccccCCCcEEEEecC-Cc---cccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGVAADVGHINTRSEVAGYMGN-DQ---LGQA-------   93 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~-~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~~a-------   93 (300)
                      +++|.|+||+|.+|.+++..|+..|.  ++++.+... .  +....++....  ..+..+... +|   .+++       
T Consensus        26 ~k~vlITGas~gIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~  101 (272)
T 4e3z_A           26 TPVVLVTGGSRGIGAAVCRLAARQGW--RVGVNYAANREAADAVVAAITESG--GEAVAIPGDVGNAADIAAMFSAVDRQ  101 (272)
T ss_dssp             SCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCChhHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            34689999999999999999999987  787764432 2  11122222211  123222111 12   1122       


Q ss_pred             cCCCCEEEEcCCCCCCCC----Cc---chhhhhhhHH----HHHHHHHHHHhh--CCCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRKPG----MT---RDDLFNINAG----IVKDLCSAIAKY--CPNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g----~~---r~dl~~~N~~----i~~~i~~~i~~~--~p~a~viv~tN  146 (300)
                      +...|++|..||....++    .+   -.+.+..|+.    +.+.+.+.+.+.  ...+.+|++|.
T Consensus       102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS  167 (272)
T 4e3z_A          102 FGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSS  167 (272)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcc
Confidence            237899999999754322    11   1223445543    344455555443  23567777764

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.38  E-value=0.019  Score=51.04  Aligned_cols=117  Identities=15%  Similarity=0.190  Sum_probs=70.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---------cHHHHhccccCCCcEEEEec-CCc---cccc-
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---------GVAADVGHINTRSEVAGYMG-NDQ---LGQA-   93 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---------g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-   93 (300)
                      .+++.|+||+|.+|.+++..|++.|.  +|++.|++...         ....++....  ..+..+.. -+|   .++. 
T Consensus         9 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~   84 (285)
T 3sc4_A            9 GKTMFISGGSRGIGLAIAKRVAADGA--NVALVAKSAEPHPKLPGTIYTAAKEIEEAG--GQALPIVGDIRDGDAVAAAV   84 (285)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHHT--SEEEEEECCTTSHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECChhhhhhhhHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHH
Confidence            35799999999999999999999987  89999986431         1122232211  12222211 112   1122 


Q ss_pred             ------cCCCCEEEEcCCCCCCC---CCc---chhhhhhhHHHHHHHHHHHHhh---CCCeEEEEecCCC
Q 022263           94 ------LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV  148 (300)
Q Consensus        94 ------~~~aDiVIi~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~  148 (300)
                            +...|++|..||.....   ..+   -...+..|+.-...+.+.+...   ...+.+|++|...
T Consensus        85 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~  154 (285)
T 3sc4_A           85 AKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPI  154 (285)
T ss_dssp             HHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCC
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChh
Confidence                  23899999999975321   112   1234556776666666665544   2356777776544

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.37  E-value=0.011  Score=52.51  Aligned_cols=77  Identities=19%  Similarity=0.170  Sum_probs=50.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCcc----c-------cc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQL----G-------QA   93 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d~----~-------~a   93 (300)
                      .++|.|+||+|.+|.+++..|+..|.  .|++.+++..+  ....++.... ...+..+.. -+|.    +       +.
T Consensus        12 ~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           12 RRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            34789999999999999999999987  89999986532  2233443322 113333221 1122    1       11


Q ss_pred             cCCCCEEEEcCCCC
Q 022263           94 LEDSDVVIIPAGVP  107 (300)
Q Consensus        94 ~~~aDiVIi~ag~~  107 (300)
                      +...|++|..||..
T Consensus        89 ~g~iD~lv~nAg~~  102 (311)
T 3o26_A           89 FGKLDILVNNAGVA  102 (311)
T ss_dssp             HSSCCEEEECCCCC
T ss_pred             CCCCCEEEECCccc
Confidence            34799999999975

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.37  E-value=0.039  Score=48.57  Aligned_cols=115  Identities=14%  Similarity=0.056  Sum_probs=65.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc---cccc-------c
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ---LGQA-------L   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~   94 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|+++...  ...++....  ..+..+.. -+|   .+++       +
T Consensus        21 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   96 (273)
T 1ae1_A           21 GTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHVF   96 (273)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999987  899999864321  122232211  12222211 112   1122       2


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCC
Q 022263           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus        95 -~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                       ...|++|..||......   .+   ....+..|+.    +.+...+.+++.. .+.+|+++..
T Consensus        97 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~  159 (273)
T 1ae1_A           97 DGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSSI  159 (273)
T ss_dssp             TSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECCG
T ss_pred             CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCH
Confidence             57999999999753211   11   1223344544    4444555555443 4667777643

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.36  E-value=0.0048  Score=54.53  Aligned_cols=109  Identities=16%  Similarity=0.124  Sum_probs=63.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc---cccc-------cCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQA-------LEDS   97 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~~~a   97 (300)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++..+..  ++...    .+..+.. -+|   .+++       +...
T Consensus        17 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~--~~~~~----~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   88 (266)
T 3p19_A           17 KLVVITGASSGIGEAIARRFSEEGH--PLLLLARRVERLK--ALNLP----NTLCAQVDVTDKYTFDTAITRAEKIYGPA   88 (266)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHH--TTCCT----TEEEEECCTTCHHHHHHHHHHHHHHHCSE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HhhcC----CceEEEecCCCHHHHHHHHHHHHHHCCCC
Confidence            4789999999999999999999987  8999998542111  11110    1111110 111   1122       2378


Q ss_pred             CEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           98 DVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        98 DiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      |++|..||......   .+   ....+..|+.    +.+.+.+.+.+.. .+.||+++.
T Consensus        89 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~IV~isS  146 (266)
T 3p19_A           89 DAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARN-CGTIINISS  146 (266)
T ss_dssp             EEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcC
Confidence            99999999753211   11   1223455544    4455666665554 456666654

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.35  E-value=0.017  Score=51.72  Aligned_cols=115  Identities=12%  Similarity=0.209  Sum_probs=64.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccC-CCcEEEEec-CCc---ccccc------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINT-RSEVAGYMG-NDQ---LGQAL------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~-~~~v~~~~~-t~d---~~~a~------   94 (300)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++....  ...++..... ...+..+.. -+|   .++++      
T Consensus        26 ~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  103 (297)
T 1xhl_A           26 GKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK  103 (297)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence            35799999999999999999999987  899999864321  1222322111 002222211 112   12222      


Q ss_pred             -CCCCEEEEcCCCCCCCC-----Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 -EDSDVVIIPAGVPRKPG-----MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 -~~aDiVIi~ag~~~~~g-----~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                       ...|++|..||......     .+   ....+..|+.    +.+...+.+.+..  +.||+++.
T Consensus       104 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--g~IV~isS  166 (297)
T 1xhl_A          104 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK--GEIVNVSS  166 (297)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             cCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CEEEEEcC
Confidence             37899999999753211     11   1223444543    4445555554433  66777654

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=96.35  E-value=0.0044  Score=57.76  Aligned_cols=72  Identities=21%  Similarity=0.307  Sum_probs=45.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHH-Hhc----cccC-----CCcEEEEecCCccccccCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA-DVG----HINT-----RSEVAGYMGNDQLGQALEDS   97 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~-dl~----~~~~-----~~~v~~~~~t~d~~~a~~~a   97 (300)
                      ++||+|+||+|.+|..+...|..++.+ ||..+...+..|+.. +..    |...     ...++.    .+. +.+.++
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~-el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~----~~~-~~~~~v   80 (359)
T 4dpl_A            7 TLKAAILGATGLVGIEYVRMLSNHPYI-KPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKP----TDP-KLMDDV   80 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSE-EEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEE----CCG-GGCTTC
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCc-eEEEEECchhcCCChhHhcccccccccccccccceEEe----CCH-HHhcCC
Confidence            479999999999999999888776644 787776554444322 210    0000     112222    122 457899


Q ss_pred             CEEEEcCC
Q 022263           98 DVVIIPAG  105 (300)
Q Consensus        98 DiVIi~ag  105 (300)
                      |+||++.+
T Consensus        81 Dvvf~a~p   88 (359)
T 4dpl_A           81 DIIFSPLP   88 (359)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999865

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=96.35  E-value=0.0044  Score=57.76  Aligned_cols=72  Identities=21%  Similarity=0.307  Sum_probs=45.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHH-Hhc----cccC-----CCcEEEEecCCccccccCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA-DVG----HINT-----RSEVAGYMGNDQLGQALEDS   97 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~-dl~----~~~~-----~~~v~~~~~t~d~~~a~~~a   97 (300)
                      ++||+|+||+|.+|..+...|..++.+ ||..+...+..|+.. +..    |...     ...++.    .+. +.+.++
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~-el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~----~~~-~~~~~v   80 (359)
T 4dpk_A            7 TLKAAILGATGLVGIEYVRMLSNHPYI-KPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKP----TDP-KLMDDV   80 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSE-EEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEE----CCG-GGCTTC
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCc-eEEEEECchhcCCChhHhcccccccccccccccceEEe----CCH-HHhcCC
Confidence            479999999999999999888776644 787776554444322 210    0000     112222    122 457899


Q ss_pred             CEEEEcCC
Q 022263           98 DVVIIPAG  105 (300)
Q Consensus        98 DiVIi~ag  105 (300)
                      |+||++.+
T Consensus        81 Dvvf~a~p   88 (359)
T 4dpk_A           81 DIIFSPLP   88 (359)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999865

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=96.35  E-value=0.0091  Score=52.74  Aligned_cols=112  Identities=25%  Similarity=0.352  Sum_probs=65.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec-CCc---ccc-------cc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG-NDQ---LGQ-------AL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-t~d---~~~-------a~   94 (300)
                      .+++.|+||+|.+|.+++..|+..|.  .|++.|.+.....  ..++.     ..+..+.. -+|   .++       .+
T Consensus        27 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (266)
T 3grp_A           27 GRKALVTGATGGIGEAIARCFHAQGA--IVGLHGTREDKLKEIAADLG-----KDVFVFSANLSDRKSIKQLAEVAEREM   99 (266)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEeecCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999997  8999998643211  11221     12222211 112   111       23


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecCC
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                      ...|++|..||......   .+   ..+.+..|+.-    .+.+.+.+.+.. .+.||++|.-
T Consensus       100 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~Iv~isS~  161 (266)
T 3grp_A          100 EGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR-YGRIINITSI  161 (266)
T ss_dssp             TSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcEEEEECCH
Confidence            47999999999753211   11   12344556554    566666665543 4666666643

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.35  E-value=0.012  Score=52.12  Aligned_cols=115  Identities=14%  Similarity=0.186  Sum_probs=64.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccC-CCcEEEEec-CCc---ccccc------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINT-RSEVAGYMG-NDQ---LGQAL------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~-~~~v~~~~~-t~d---~~~a~------   94 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++..... ...+..+.. -+|   .++++      
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            6 NKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            35799999999999999999999987  899999864321  1222322111 002332211 112   11222      


Q ss_pred             -CCCCEEEEcCCCCCCCC-------Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 -EDSDVVIIPAGVPRKPG-------MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 -~~aDiVIi~ag~~~~~g-------~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                       ...|++|..||......       .+   ....+..|+.    +.+...+.+.+..  +.+|+++.
T Consensus        84 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  148 (280)
T 1xkq_A           84 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK--GEIVNVSS  148 (280)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC--CcEEEecC
Confidence             37899999999753211       11   1223444544    3444445554433  66666654

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=96.35  E-value=0.0095  Score=52.04  Aligned_cols=118  Identities=13%  Similarity=0.077  Sum_probs=67.2

Q ss_pred             CCCCceEEEEcCC--CChHHHHHHHHHhCCCCCEEEEEecCCc-ccHHHHhccccCCCcEEEEec-CCc---cccc----
Q 022263           25 SVPDRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMG-NDQ---LGQA----   93 (300)
Q Consensus        25 ~~~~~KI~IIGaa--G~VG~~~a~~L~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a----   93 (300)
                      ..+.++|.|+||+  |.+|.+++..|+..|.  +|++.|++.. .....++.....  .+..+.. -+|   .++.    
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~   86 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAEFG--SELVFPCDVADDAQIDALFASL   86 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHHcC--CcEEEECCCCCHHHHHHHHHHH
Confidence            3345689999998  8999999999999987  8999998642 112222221111  1111110 112   1122    


Q ss_pred             ---cCCCCEEEEcCCCCCC-----C--C-Cc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263           94 ---LEDSDVVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (300)
Q Consensus        94 ---~~~aDiVIi~ag~~~~-----~--g-~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (300)
                         +...|++|.+||....     +  . .+   ....+..|..-...+.+.+..+- +.+.+|+++.
T Consensus        87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  154 (271)
T 3ek2_A           87 KTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY  154 (271)
T ss_dssp             HHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             HHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence               2367999999997532     1  0 11   12344556555555666555442 2556776654

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.34  E-value=0.0053  Score=56.83  Aligned_cols=73  Identities=18%  Similarity=0.255  Sum_probs=43.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCC--CcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ++||+|+||+|.+|..++..|...+.+ ||+.+......+...+-.+..+.  ..+..    .+++ ++.++|+||++.|
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~-elv~v~s~~~~g~~~~~~~~~~~g~~~~~~----~~~~-~~~~vDvV~~a~g   77 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYL-EVKQVTSRRFAGEPVHFVHPNLRGRTNLKF----VPPE-KLEPADILVLALP   77 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTE-EEEEEBCSTTTTSBGGGTCGGGTTTCCCBC----BCGG-GCCCCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCc-EEEEEECchhhCchhHHhCchhcCcccccc----cchh-HhcCCCEEEEcCC
Confidence            579999998899999999888876544 66655433323322221111110  11111    1232 3689999999876


Q ss_pred             C
Q 022263          106 V  106 (300)
Q Consensus       106 ~  106 (300)
                      .
T Consensus        78 ~   78 (345)
T 2ozp_A           78 H   78 (345)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.33  E-value=0.027  Score=49.58  Aligned_cols=115  Identities=15%  Similarity=0.148  Sum_probs=64.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc-------c
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA-------L   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~   94 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++...  ....++.... ...+..+.. -+|   .+++       +
T Consensus        21 ~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   97 (267)
T 1vl8_A           21 GRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEKF   97 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999987  89999986432  1122231110 112222211 112   1122       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHH----HHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|..||......   .+   ....+..|+.-.    +...+.+++. ..+.+|+++.
T Consensus        98 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS  158 (267)
T 1vl8_A           98 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES-DNPSIINIGS  158 (267)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC-SSCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEECC
Confidence            37899999999753211   11   122344555444    4444444433 3456666654

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.33  E-value=0.0088  Score=51.98  Aligned_cols=118  Identities=20%  Similarity=0.217  Sum_probs=66.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec-CCc--ccHHHHhccccCCCcEEEEec-CCc---cccc-----
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANT--PGVAADVGHINTRSEVAGYMG-NDQ---LGQA-----   93 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~-~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-----   93 (300)
                      .+.++|.|+||+|.+|.+++..|++.|.  .+++.|. +..  .....++.....  .+..+.. -+|   .+++     
T Consensus        11 ~~~k~vlITGas~giG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~   86 (256)
T 3ezl_A           11 MSQRIAYVTGGMGGIGTSICQRLHKDGF--RVVAGCGPNSPRRVKWLEDQKALGF--DFYASEGNVGDWDSTKQAFDKVK   86 (256)
T ss_dssp             --CEEEEETTTTSHHHHHHHHHHHHTTE--EEEEEECTTCSSHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCC--eeEEEecCCCCHHHHHHHHHHHH
Confidence            3456899999999999999999999987  7888884 322  122223322211  2222111 112   1122     


Q ss_pred             --cCCCCEEEEcCCCCCCCC---Ccc---hhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecCCC
Q 022263           94 --LEDSDVVIIPAGVPRKPG---MTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (300)
Q Consensus        94 --~~~aDiVIi~ag~~~~~g---~~r---~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~  148 (300)
                        +...|++|..||......   .+.   ...+..|..-    .+.+.+.+.+.. .+.+|++|...
T Consensus        87 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~  152 (256)
T 3ezl_A           87 AEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG-WGRIINISSVN  152 (256)
T ss_dssp             HHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCCC
T ss_pred             HhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchh
Confidence              337899999999753221   121   2244455444    555566666554 46677776544

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=96.33  E-value=0.008  Score=52.11  Aligned_cols=108  Identities=13%  Similarity=0.111  Sum_probs=62.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEE-e--cCCcccH--HHHhccccCCCcEEEEecCCccc-------cccCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-D--IANTPGV--AADVGHINTRSEVAGYMGNDQLG-------QALED   96 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~-D--~~~~~g~--~~dl~~~~~~~~v~~~~~t~d~~-------~a~~~   96 (300)
                      +++.|+||+|.+|.+++..|+..|.  +|++. +  ++.....  ..++ .     ..+.. ...+.+       +.+..
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~r~~~~~~~~~~~~-~-----~~~~~-~~~~v~~~~~~~~~~~g~   72 (244)
T 1zmo_A            2 VIALVTHARHFAGPAAVEALTQDGY--TVVCHDASFADAAERQRFESEN-P-----GTIAL-AEQKPERLVDATLQHGEA   72 (244)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHS-T-----TEEEC-CCCCGGGHHHHHGGGSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCcCCHHHHHHHHHHh-C-----CCccc-CHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999987  89998 5  6542211  1222 0     11111 111222       22347


Q ss_pred             CCEEEEcCCCCCC----C--CCc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           97 SDVVIIPAGVPRK----P--GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        97 aDiVIi~ag~~~~----~--g~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .|++|..||....    +  ..+   ....+..|+.    +.+.+.+.+.+. ..+.+|+++.
T Consensus        73 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS  134 (244)
T 1zmo_A           73 IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAA-GGASVIFITS  134 (244)
T ss_dssp             EEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             CCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECC
Confidence            8999999997533    1  111   1224455554    444455555443 3567777764

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=96.30  E-value=0.003  Score=57.56  Aligned_cols=71  Identities=14%  Similarity=0.183  Sum_probs=48.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhC-CCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ..++|+|||+ |.+|..++..|... + ..+|.++|+++.+.+  ++.+.... .+..   .++++++++++|+|+++..
T Consensus       134 ~~~~igiIG~-G~~g~~~a~~l~~~~g-~~~V~v~dr~~~~~~--~l~~~~~~-~~~~---~~~~~e~v~~aDiVi~atp  205 (312)
T 2i99_A          134 SSEVLCILGA-GVQAYSHYEIFTEQFS-FKEVRIWNRTKENAE--KFADTVQG-EVRV---CSSVQEAVAGADVIITVTL  205 (312)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHHCC-CSEEEEECSSHHHHH--HHHHHSSS-CCEE---CSSHHHHHTTCSEEEECCC
T ss_pred             CCcEEEEECC-cHHHHHHHHHHHHhCC-CcEEEEEcCCHHHHH--HHHHHhhC-CeEE---eCCHHHHHhcCCEEEEEeC
Confidence            4579999995 99999999888764 5 358999998654322  22221100 1332   2467788999999998753

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.30  E-value=0.021  Score=50.82  Aligned_cols=113  Identities=17%  Similarity=0.271  Sum_probs=66.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc-------cC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA-------LE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~~   95 (300)
                      +.+.|+||+|.+|.+++..|+..|.  .|++.|++...  ....++....  ..+..+.. -+|   .+++       +.
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (283)
T 3v8b_A           29 PVALITGAGSGIGRATALALAADGV--TVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLKFG  104 (283)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4689999999999999999999987  89999986532  2223343221  12222211 112   1122       34


Q ss_pred             CCCEEEEcCCCCCC--C--CCcc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRK--P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~--~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ..|++|..||....  +  ..+.   ...+..|+.    +.+...+.+++.. .+.+|++|.
T Consensus       105 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS  165 (283)
T 3v8b_A          105 HLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRG-GGAIVVVSS  165 (283)
T ss_dssp             CCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CceEEEEcC
Confidence            79999999997422  2  1221   223455543    4455555555543 566666654

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=96.28  E-value=0.054  Score=43.44  Aligned_cols=106  Identities=12%  Similarity=0.058  Sum_probs=63.0

Q ss_pred             CceEEEEcCC---CChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           28 DRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaa---G~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +.+|+||||+   |.+|..++..|...++  +  ++++++....   +.      .+..+   .++.+.-+..|+++++.
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~--~--v~~Vnp~~~~---i~------G~~~y---~sl~~l~~~vDlvvi~v   85 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGY--D--VYPVNPKYEE---VL------GRKCY---PSVLDIPDKIEVVDLFV   85 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC--E--EEEECTTCSE---ET------TEECB---SSGGGCSSCCSEEEECS
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCC--E--EEEECCCCCe---EC------Ceecc---CCHHHcCCCCCEEEEEe
Confidence            4589999975   6899999999998887  5  5555443211   11      23332   24445456899999984


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      .                .+...++++++.+.+..++++.-+-...    -+.+..+..|    -+++|=
T Consensus        86 p----------------~~~~~~vv~~~~~~gi~~i~~~~g~~~~----~l~~~a~~~G----i~vvGp  130 (144)
T 2d59_A           86 K----------------PKLTMEYVEQAIKKGAKVVWFQYNTYNR----EASKKADEAG----LIIVAN  130 (144)
T ss_dssp             C----------------HHHHHHHHHHHHHHTCSEEEECTTCCCH----HHHHHHHHTT----CEEEES
T ss_pred             C----------------HHHHHHHHHHHHHcCCCEEEECCCchHH----HHHHHHHHcC----CEEEcC
Confidence            1                2455666667767776665432121211    2334455544    357765

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.28  E-value=0.035  Score=48.93  Aligned_cols=114  Identities=22%  Similarity=0.286  Sum_probs=64.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHHHHhccccCCCcEEEEec-CCc---cccc------
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG-NDQ---LGQA------   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a------   93 (300)
                      +.+.+.|+||+|.+|.+++..|+..|.  ++++.|....   .....++....  ..+..+.. -+|   .+++      
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~v~~~~~~~~~  102 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGA--KVAVNYASSAGAADEVVAAIAAAG--GEAFAVKADVSQESEVEALFAAVIE  102 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            345789999999999999999999987  8989887432   11222232211  12222211 112   1222      


Q ss_pred             -cCCCCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEec
Q 022263           94 -LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        94 -~~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~t  145 (300)
                       +...|++|..||......   .+   -...+..|+.    +.+...+.+.+.. .+.||+++
T Consensus       103 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~is  164 (269)
T 4dmm_A          103 RWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR-SGRIINIA  164 (269)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEC
Confidence             237899999999753221   11   1223444543    4455555555543 45666665

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=96.27  E-value=0.0055  Score=56.41  Aligned_cols=97  Identities=27%  Similarity=0.395  Sum_probs=61.8

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ....++|+|||. |.+|..++..+...|.  +|..+|...... ..++    .    . +  ..++++.+++||+|+++.
T Consensus       143 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~-~~~~----~----~-~--~~~l~ell~~aDvV~l~~  207 (333)
T 1j4a_A          143 EVRDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPE-LEKK----G----Y-Y--VDSLDDLYKQADVISLHV  207 (333)
T ss_dssp             CGGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHH-HHHT----T----C-B--CSCHHHHHHHCSEEEECS
T ss_pred             cCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchh-HHhh----C----e-e--cCCHHHHHhhCCEEEEcC
Confidence            445679999995 9999999999988887  899999865432 1111    1    1 1  125667889999999986


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCc
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN  149 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d  149 (300)
                      ...  + .++ .++  |    .+   .+....|++++|+++  .++|
T Consensus       208 p~~--~-~t~-~li--~----~~---~l~~mk~ga~lIn~arg~~vd  241 (333)
T 1j4a_A          208 PDV--P-ANV-HMI--N----DE---SIAKMKQDVVIVNVSRGPLVD  241 (333)
T ss_dssp             CCC--G-GGT-TCB--S----HH---HHHHSCTTEEEEECSCGGGBC
T ss_pred             CCc--H-HHH-HHH--h----HH---HHhhCCCCcEEEECCCCcccC
Confidence            321  1 111 122  1    12   223345789998885  3455

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.25  E-value=0.02  Score=50.96  Aligned_cols=115  Identities=19%  Similarity=0.224  Sum_probs=65.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc-------c
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA-------L   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~   94 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++...  ....++....  ..+..+.. -+|   .++.       +
T Consensus         8 gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (280)
T 3tox_A            8 GKIAIVTGASSGIGRAAALLFAREGA--KVVVTARNGNALAELTDEIAGGG--GEAAALAGDVGDEALHEALVELAVRRF   83 (280)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHTTTT--CCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            34789999999999999999999997  89999986532  2222332211  12222211 011   1122       2


Q ss_pred             CCCCEEEEcCCCCCCCC----Ccc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCC
Q 022263           95 EDSDVVIIPAGVPRKPG----MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g----~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                      ...|++|..||.....+    .+.   ...+..|+.    +.+...+.+.+. ..+.+|+++..
T Consensus        84 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~  146 (280)
T 3tox_A           84 GGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAAL-GGGSLTFTSSF  146 (280)
T ss_dssp             SCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCS
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEcCh
Confidence            47999999999642221    111   223444543    444455555443 35667766543

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.25  E-value=0.068  Score=47.05  Aligned_cols=114  Identities=15%  Similarity=0.179  Sum_probs=69.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc---cccc--cCCCCEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQA--LEDSDVVII  102 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a--~~~aDiVIi  102 (300)
                      +.+.|+||++-+|..++..|++.|.  .|++.|++..+.....+.....  ....+.. -+|   .++.  .-..|++|.
T Consensus        10 KvalVTGas~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~g~iDiLVN   85 (247)
T 4hp8_A           10 RKALVTGANTGLGQAIAVGLAAAGA--EVVCAARRAPDETLDIIAKDGG--NASALLIDFADPLAAKDSFTDAGFDILVN   85 (247)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTTC--CEEEEECCTTSTTTTTTSSTTTCCCEEEE
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhCC--cEEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            3678889989999999999999997  8999998754322223332211  1221111 011   1112  235799999


Q ss_pred             cCCCCCCCC---Cc---chhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263          103 PAGVPRKPG---MT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       103 ~ag~~~~~g---~~---r~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .||......   .+   ....+.-|+    -..+..++.+.+....+.||+++.
T Consensus        86 NAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS  139 (247)
T 4hp8_A           86 NAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIAS  139 (247)
T ss_dssp             CCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            999754221   11   222344454    355677777877777788888764

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.25  E-value=0.049  Score=47.65  Aligned_cols=114  Identities=18%  Similarity=0.121  Sum_probs=65.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc-------
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA-------   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------   93 (300)
                      +.+++.|+||+|.+|.+++..|++.|.  +|++.|++...  ....++....  ..+..+.. -+|   .++.       
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKA   85 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999997  89999986432  2222333221  12222211 112   1122       


Q ss_pred             cCCCCEEEEcCCCCCCCC----Ccc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRKPG----MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g----~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +...|++|..||.....+    .+.   .+.+..|+.    +.+.+.+.+.+..  +.+|+++.
T Consensus        86 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  147 (264)
T 3ucx_A           86 YGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK--GAVVNVNS  147 (264)
T ss_dssp             TSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT--CEEEEECC
T ss_pred             cCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEECc
Confidence            347899999998642221    111   223444543    4455555555543  66666654

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.24  E-value=0.021  Score=50.83  Aligned_cols=116  Identities=14%  Similarity=0.175  Sum_probs=67.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cccc-------c
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQA-------L   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~   94 (300)
                      .+.+.|+||+|.+|.+++..|++.|.  +|++.|++...  ....++...... .+..+.. -+|   .+++       +
T Consensus        33 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~  109 (281)
T 4dry_A           33 GRIALVTGGGTGVGRGIAQALSAEGY--SVVITGRRPDVLDAAAGEIGGRTGN-IVRAVVCDVGDPDQVAALFAAVRAEF  109 (281)
T ss_dssp             -CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHSS-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCC-eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35789999999999999999999987  89999986532  222223221111 1122111 112   1112       2


Q ss_pred             CCCCEEEEcCCCCCCCC----Ccc---hhhhhhhHH----HHHHHHHHHHhhCC-CeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG----MTR---DDLFNINAG----IVKDLCSAIAKYCP-NAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g----~~r---~dl~~~N~~----i~~~i~~~i~~~~p-~a~viv~tN  146 (300)
                      ...|++|.+||.....+    .+.   ...+..|+.    +.+.+.+.+.+..+ .+.||+++.
T Consensus       110 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS  173 (281)
T 4dry_A          110 ARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGS  173 (281)
T ss_dssp             SCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence            46799999999753221    111   223444543    45666677766553 577777764

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.23  E-value=0.028  Score=49.45  Aligned_cols=114  Identities=17%  Similarity=0.161  Sum_probs=65.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cHHHHhccccCCCcEEEEecC-Cc---ccccc------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMGN-DQ---LGQAL------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~------   94 (300)
                      .++|.|+||+|.+|.+++..|++.|.  +|++.+.+...   ....++....  ..+..+... +|   .++.+      
T Consensus        29 ~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~  104 (271)
T 4iin_A           29 GKNVLITGASKGIGAEIAKTLASMGL--KVWINYRSNAEVADALKNELEEKG--YKAAVIKFDAASESDFIEAIQTIVQS  104 (271)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHh
Confidence            35799999999999999999999987  89999985421   1112222211  123222111 12   11222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 -~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                       ...|++|..||......   .+   -...+..|+.    +.+.+.+.+++.. .+.+|+++.
T Consensus       105 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS  166 (271)
T 4iin_A          105 DGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSR-FGSVVNVAS  166 (271)
T ss_dssp             HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC-CCEEEEEec
Confidence             37999999999754321   11   1223444543    4455555555543 456666653

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.22  E-value=0.0044  Score=57.70  Aligned_cols=75  Identities=17%  Similarity=0.273  Sum_probs=43.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcE-EEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV-AGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v-~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ++||+|+||+|.+|..++..|.+.+.+ |++.+......+...+-.|..+...+ .... ..+ ++.++++|+||++.+
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai~~~~~~g~~~~~~~~~~~~~v~~dl~-~~~-~~~~~~vDvVf~atp   91 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHF-QVTLMTADRKAGQSMESVFPHLRAQKLPTLV-SVK-DADFSTVDAVFCCLP   91 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSE-EEEEEBCSTTTTSCHHHHCGGGTTSCCCCCB-CGG-GCCGGGCSEEEECCC
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCc-EEEEEeCchhcCCCHHHhCchhcCcccccce-ecc-hhHhcCCCEEEEcCC
Confidence            369999999999999999988887644 56655433333332221221111010 0000 012 345678999999875

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.21  E-value=0.015  Score=51.14  Aligned_cols=113  Identities=17%  Similarity=0.254  Sum_probs=63.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cHHHHhccccCCCcEEEEec-CCcc---ccc-------c
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMG-NDQL---GQA-------L   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-------~   94 (300)
                      +.+.|+||+|.+|.+++..|+..|.  .+++.|.+...   ....++....  ..+..+.. -+|.   +++       +
T Consensus        26 k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (269)
T 3gk3_A           26 RVAFVTGGMGGLGAAISRRLHDAGM--AVAVSHSERNDHVSTWLMHERDAG--RDFKAYAVDVADFESCERCAEKVLADF  101 (269)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEECSCHHHHHHHHHHHHTTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            3578999999999999999999987  89999864421   1112222211  12222211 1121   122       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Ccc---hhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~r---~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|..||......   .+.   ...+..|+.-    .+.+.+.+.+. ..+.+|+++.
T Consensus       102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS  162 (269)
T 3gk3_A          102 GKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVER-RFGRIVNIGS  162 (269)
T ss_dssp             SCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEeCC
Confidence            37999999999753211   121   2234445443    44444545443 3466776654

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=96.21  E-value=0.015  Score=51.67  Aligned_cols=114  Identities=11%  Similarity=0.041  Sum_probs=66.4

Q ss_pred             ceEEEEcCC--CChHHHHHHHHHhCCCCCEEEEEecCCc-ccHHHHhccccCCCcEEEEec-CCc---cccc-------c
Q 022263           29 RKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMG-NDQ---LGQA-------L   94 (300)
Q Consensus        29 ~KI~IIGaa--G~VG~~~a~~L~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~   94 (300)
                      ++|.|+||+  |.+|.+++..|+..|.  +|++.|++.. .....++......  +..+.. -+|   .+++       +
T Consensus        22 k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~--~~~~~~Dl~~~~~v~~~~~~~~~~~   97 (285)
T 2p91_A           22 KRALITGVANERSIAYGIAKSFHREGA--QLAFTYATPKLEKRVREIAKGFGS--DLVVKCDVSLDEDIKNLKKFLEENW   97 (285)
T ss_dssp             CEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTC--CCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            469999997  8999999999999887  8999998652 1122223221110  111111 112   1122       2


Q ss_pred             CCCCEEEEcCCCCCC-----C--CCc---chhhhhhhHHHHHHHHHHHHhhC--CCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~-----~--g~~---r~dl~~~N~~i~~~i~~~i~~~~--p~a~viv~tN  146 (300)
                      ...|++|..||....     +  ..+   ....+..|+.-...+.+.+.++-  ..+.||++|.
T Consensus        98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS  161 (285)
T 2p91_A           98 GSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSY  161 (285)
T ss_dssp             SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEEC
T ss_pred             CCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence            378999999997532     1  111   12345667666666666665542  2467777764

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=96.19  E-value=0.0078  Score=53.02  Aligned_cols=60  Identities=15%  Similarity=0.205  Sum_probs=40.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEE-EEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +||||+|+|+ |.+|+.++..+.+.+.  +|+ .+|.+...       +.    .+..   ++|+++.+ ++|+||-.+
T Consensus         2 ~MmkI~ViGa-GrMG~~i~~~l~~~~~--eLva~~d~~~~~-------~~----gv~v---~~dl~~l~-~~DVvIDft   62 (243)
T 3qy9_A            2 ASMKILLIGY-GAMNQRVARLAEEKGH--EIVGVIENTPKA-------TT----PYQQ---YQHIADVK-GADVAIDFS   62 (243)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEECSSCC---------C----CSCB---CSCTTTCT-TCSEEEECS
T ss_pred             CceEEEEECc-CHHHHHHHHHHHhCCC--EEEEEEecCccc-------cC----CCce---eCCHHHHh-CCCEEEEeC
Confidence            3789999997 9999999998888775  655 47775431       11    1111   24665656 899988543

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=96.18  E-value=0.0085  Score=56.69  Aligned_cols=105  Identities=24%  Similarity=0.339  Sum_probs=65.6

Q ss_pred             ccccc-CCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcccccc
Q 022263           16 AGARG-YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL   94 (300)
Q Consensus        16 ~~~~~-~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~   94 (300)
                      .|.+. |...+...++|+|||. |.+|+.+|..+...|.  +|+.||..+...    +  .    .+..   ..++++.+
T Consensus       132 ~W~~~~~~~~el~gktlGiIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~----~--~----~~~~---~~~l~ell  195 (404)
T 1sc6_A          132 VGNKLAAGSFEARGKKLGIIGY-GHIGTQLGILAESLGM--YVYFYDIENKLP----L--G----NATQ---VQHLSDLL  195 (404)
T ss_dssp             CCC-----CCCSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCCC----C--T----TCEE---CSCHHHHH
T ss_pred             CccccCCCccccCCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEEcCCchhc----c--C----Ccee---cCCHHHHH
Confidence            45443 3334556779999995 9999999999988887  899999854321    0  0    1221   13567889


Q ss_pred             CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCc
Q 022263           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN  149 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d  149 (300)
                      +.||+|++....  .+ .++. ++  |    .   +.+....|.+++|+++  .++|
T Consensus       196 ~~aDvV~l~~P~--t~-~t~~-li--~----~---~~l~~mk~ga~lIN~aRg~~vd  239 (404)
T 1sc6_A          196 NMSDVVSLHVPE--NP-STKN-MM--G----A---KEISLMKPGSLLINASRGTVVD  239 (404)
T ss_dssp             HHCSEEEECCCS--ST-TTTT-CB--C----H---HHHHHSCTTEEEEECSCSSSBC
T ss_pred             hcCCEEEEccCC--Ch-HHHH-Hh--h----H---HHHhhcCCCeEEEECCCChHHh
Confidence            999999998532  11 1221 22  2    1   2233445789999985  4566

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.17  E-value=0.033  Score=49.13  Aligned_cols=113  Identities=14%  Similarity=0.215  Sum_probs=65.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEec-CCc---ccc-------ccC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQ---LGQ-------ALE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~-------a~~   95 (300)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++..  +....++....  ..+..+.. -+|   .++       .+.
T Consensus         5 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            5 KVILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999997  8999998653  22223333221  12222211 112   111       234


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ..|++|..||......   .+   -...+..|+.    +.+.+.+.+.+.. .+.||+++.
T Consensus        81 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS  140 (264)
T 3tfo_A           81 RIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQR-SGQIINIGS  140 (264)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CeEEEEEcC
Confidence            7999999999753221   11   1223444543    4455556555543 566676654

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=96.17  E-value=0.0037  Score=57.62  Aligned_cols=98  Identities=24%  Similarity=0.300  Sum_probs=63.3

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      .....++|+|||. |.+|+.+|..+...|.  +|+.||......    ...     .+. +   .++++.+++||+|+++
T Consensus       141 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~----~~~-----~~~-~---~~l~ell~~aDvV~~~  204 (333)
T 1dxy_A          141 KELGQQTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYPMKG----DHP-----DFD-Y---VSLEDLFKQSDVIDLH  204 (333)
T ss_dssp             CCGGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSS----CCT-----TCE-E---CCHHHHHHHCSEEEEC
T ss_pred             cCCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCcchh----hHh-----ccc-c---CCHHHHHhcCCEEEEc
Confidence            3455679999995 9999999999988887  899999865322    111     111 1   2566888999999998


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCcc
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNS  150 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d~  150 (300)
                      ....  + .++ .++  |    .+   .+....|.+++|+++  .++|.
T Consensus       205 ~P~~--~-~t~-~li--~----~~---~l~~mk~ga~lIn~srg~~vd~  240 (333)
T 1dxy_A          205 VPGI--E-QNT-HII--N----EA---AFNLMKPGAIVINTARPNLIDT  240 (333)
T ss_dssp             CCCC--G-GGT-TSB--C----HH---HHHHSCTTEEEEECSCTTSBCH
T ss_pred             CCCc--h-hHH-HHh--C----HH---HHhhCCCCcEEEECCCCcccCH
Confidence            5321  1 111 122  2    12   233445789999885  45663

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.16  E-value=0.019  Score=51.41  Aligned_cols=116  Identities=9%  Similarity=0.039  Sum_probs=67.0

Q ss_pred             CceEEEEcCCCC--hHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccccCCCcEEEEec-CCc---ccc-------c
Q 022263           28 DRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMG-NDQ---LGQ-------A   93 (300)
Q Consensus        28 ~~KI~IIGaaG~--VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~-t~d---~~~-------a   93 (300)
                      .+++.|+||+|.  +|.+++..|+..|.  +|++.|+++.. ....++.....  .+..+.. -+|   .++       .
T Consensus        31 gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (293)
T 3grk_A           31 GKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLEKK  106 (293)
T ss_dssp             TCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHHh
Confidence            357999999888  99999999999987  89999986421 11122221111  1222111 112   111       2


Q ss_pred             cCCCCEEEEcCCCCC-----CC--CCc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 022263           94 LEDSDVVIIPAGVPR-----KP--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~-----~~--g~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (300)
                      +...|++|..||...     .+  ..+   ....+..|+.-...+.+.+..+- ..+.||++|..
T Consensus       107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~  171 (293)
T 3grk_A          107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYY  171 (293)
T ss_dssp             TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECG
T ss_pred             cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeh
Confidence            347899999999753     11  111   22345566665555555555443 36777777643

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=96.16  E-value=0.0041  Score=53.14  Aligned_cols=104  Identities=18%  Similarity=0.187  Sum_probs=66.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      .+++.|+||+|.+|.+++..|+..|.  .|++.|++..    .|+.+..   .++      ..-+.+...|++|..||..
T Consensus         6 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~----~D~~~~~---~v~------~~~~~~g~id~lv~nAg~~   70 (223)
T 3uce_A            6 KTVYVVLGGTSGIGAELAKQLESEHT--IVHVASRQTG----LDISDEK---SVY------HYFETIGAFDHLIVTAGSY   70 (223)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHCSTTE--EEEEESGGGT----CCTTCHH---HHH------HHHHHHCSEEEEEECCCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEecCCcc----cCCCCHH---HHH------HHHHHhCCCCEEEECCCCC
Confidence            34789999999999999999998887  8999987532    3443321   111      1112346789999999965


Q ss_pred             CCCC----Cc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263          108 RKPG----MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (300)
Q Consensus       108 ~~~g----~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (300)
                      ...+    .+   ....+..|..-...+.+.+.++- +.+.+++++.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS  117 (223)
T 3uce_A           71 APAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSG  117 (223)
T ss_dssp             CCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecc
Confidence            2221    12   22345667766666666665543 2466776654

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=96.16  E-value=0.0082  Score=52.11  Aligned_cols=57  Identities=25%  Similarity=0.352  Sum_probs=42.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEE-EEEecCCcccHHHHhccccCCCcEEEEecCCcccccc-CCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRL-ALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el-~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~-~~aDiVIi~ag  105 (300)
                      |||+|||+ |.+|..++..|...++  ++ .++|.++ +..     .        .+   +|+++.+ .++|+|+++..
T Consensus         1 m~vgiIG~-G~mG~~~~~~l~~~g~--~lv~v~d~~~-~~~-----~--------~~---~~~~~l~~~~~DvVv~~~~   59 (236)
T 2dc1_A            1 MLVGLIGY-GAIGKFLAEWLERNGF--EIAAILDVRG-EHE-----K--------MV---RGIDEFLQREMDVAVEAAS   59 (236)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEECSSC-CCT-----T--------EE---SSHHHHTTSCCSEEEECSC
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCC--EEEEEEecCc-chh-----h--------hc---CCHHHHhcCCCCEEEECCC
Confidence            69999996 9999999988887676  76 6888764 111     0        11   3566667 69999999853

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.14  E-value=0.039  Score=48.64  Aligned_cols=117  Identities=17%  Similarity=0.188  Sum_probs=67.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---------cHHHHhccccCCCcEEEEec-CCcc---cc--
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---------GVAADVGHINTRSEVAGYMG-NDQL---GQ--   92 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---------g~~~dl~~~~~~~~v~~~~~-t~d~---~~--   92 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++...         ....++....  ..+..+.. -+|.   ++  
T Consensus         6 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~   81 (274)
T 3e03_A            6 GKTLFITGASRGIGLAIALRAARDGA--NVAIAAKSAVANPKLPGTIHSAAAAVNAAG--GQGLALKCDIREEDQVRAAV   81 (274)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCSCCTTSCCCHHHHHHHHHHHT--SEEEEEECCTTCHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeccchhhhhhHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHH
Confidence            45799999999999999999999997  89999986421         1111222111  12222211 1121   11  


Q ss_pred             -----ccCCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHH----HHHHHHHHhhCCCeEEEEecCCCc
Q 022263           93 -----ALEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus        93 -----a~~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                           .+...|++|..||......   .+   ....+..|+.-.    +.+.+.+.+ ...+.+|+++....
T Consensus        82 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-~~~g~iv~isS~~~  152 (274)
T 3e03_A           82 AATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQ-APNPHILTLAPPPS  152 (274)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTT-SSSCEEEECCCCCC
T ss_pred             HHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHh-cCCceEEEECChHh
Confidence                 2347899999999753221   11   122445565544    444444443 34567777776554

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.12  E-value=0.028  Score=50.13  Aligned_cols=34  Identities=21%  Similarity=0.175  Sum_probs=30.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEe-cCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D-~~~   64 (300)
                      +++.|+||+|.+|..++..|+..|.  +|++.| ++.
T Consensus        10 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~r~~   44 (291)
T 1e7w_A           10 PVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   44 (291)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--eEEEEcCCCH
Confidence            4789999999999999999999987  899999 754

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=96.12  E-value=0.013  Score=56.69  Aligned_cols=72  Identities=13%  Similarity=0.133  Sum_probs=44.5

Q ss_pred             CCC-ceEEEEcCCCChHHHHHHHHHhC------CCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCC
Q 022263           26 VPD-RKVAVLGAAGGIGQPLALLMKLN------PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSD   98 (300)
Q Consensus        26 ~~~-~KI~IIGaaG~VG~~~a~~L~~~------~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aD   98 (300)
                      .+. +||+|||. |.+|.+++..|...      |+  ++++.+....+....-.........-.    ..+..+++++||
T Consensus        51 L~GiKkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~--~ViVg~r~~sks~e~A~e~G~~v~d~t----a~s~aEAa~~AD  123 (525)
T 3fr7_A           51 FKGIKQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKIGLRKGSKSFDEARAAGFTEESGT----LGDIWETVSGSD  123 (525)
T ss_dssp             TTTCSEEEEECC-TTHHHHHHHHHHHHHHHTTCCC--EEEEEECTTCSCHHHHHHTTCCTTTTC----EEEHHHHHHHCS
T ss_pred             hcCCCEEEEEeE-hHHHHHHHHHHHhcccccCCCC--EEEEEeCCchhhHHHHHHCCCEEecCC----CCCHHHHHhcCC
Confidence            344 69999995 99999999999987      77  666655533222211111111000000    024568899999


Q ss_pred             EEEEcC
Q 022263           99 VVIIPA  104 (300)
Q Consensus        99 iVIi~a  104 (300)
                      +||++.
T Consensus       124 VVILaV  129 (525)
T 3fr7_A          124 LVLLLI  129 (525)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            999985

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.11  E-value=0.017  Score=50.74  Aligned_cols=35  Identities=26%  Similarity=0.514  Sum_probs=30.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..||+|+|+ |.+|+.++..|+..|+ ++|.++|.+.
T Consensus        31 ~~~VlVvG~-Gg~G~~va~~La~~Gv-~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CCeEEEEee-CHHHHHHHHHHHHcCC-CeEEEEcCCC
Confidence            358999996 9999999999998885 5899999864

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=96.11  E-value=0.028  Score=51.15  Aligned_cols=34  Identities=21%  Similarity=0.175  Sum_probs=30.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEe-cCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D-~~~   64 (300)
                      +++.|+||+|.+|..++..|+..|.  +|++.| ++.
T Consensus        47 k~~lVTGas~GIG~aia~~La~~G~--~Vv~~~~r~~   81 (328)
T 2qhx_A           47 PVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   81 (328)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            4789999999999999999999997  899999 654

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=96.10  E-value=0.032  Score=48.84  Aligned_cols=113  Identities=18%  Similarity=0.204  Sum_probs=62.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEE-ecCCc--ccHHHHhccccCCCcEEEEec-CCc---cccc-------c
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANT--PGVAADVGHINTRSEVAGYMG-NDQ---LGQA-------L   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~-D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~   94 (300)
                      +++.|+||+|.+|.+++..|+..|.  ++++. +.+..  .....++....  ..+..+.. -+|   .++.       +
T Consensus         5 k~vlVTGas~gIG~aia~~l~~~G~--~vv~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (258)
T 3oid_A            5 KCALVTGSSRGVGKAAAIRLAENGY--NIVINYARSKKAALETAEEIEKLG--VKVLVVKANVGQPAKIKEMFQQIDETF   80 (258)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999987  78886 55432  12222333221  12332211 112   1122       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Ccc---hhhhhhhHHH----HHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~r---~dl~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|..||......   .+.   ...+..|+.-    .+...+.+++. ..+.||++|.
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~isS  141 (258)
T 3oid_A           81 GRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKN-GGGHIVSISS  141 (258)
T ss_dssp             SCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECc
Confidence            36699999998643211   111   2234455443    44445554443 3566776654

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=96.10  E-value=0.0039  Score=57.38  Aligned_cols=97  Identities=22%  Similarity=0.235  Sum_probs=62.5

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      .....++|+|||. |.+|..++..+...|.  +|..+|......    +..     .+. +   .++++.+++||+|+++
T Consensus       142 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~----~~~-----~~~-~---~~l~ell~~aDvV~~~  205 (331)
T 1xdw_A          142 KEVRNCTVGVVGL-GRIGRVAAQIFHGMGA--TVIGEDVFEIKG----IED-----YCT-Q---VSLDEVLEKSDIITIH  205 (331)
T ss_dssp             CCGGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCCS----CTT-----TCE-E---CCHHHHHHHCSEEEEC
T ss_pred             cCCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCccHH----HHh-----ccc-c---CCHHHHHhhCCEEEEe
Confidence            3445679999995 9999999999988887  899999865322    111     111 1   2566788999999997


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCc
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN  149 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d  149 (300)
                      ....  + .++ .++  |    .   +.+....|.+++|+++  .++|
T Consensus       206 ~p~t--~-~t~-~li--~----~---~~l~~mk~ga~lin~srg~~vd  240 (331)
T 1xdw_A          206 APYI--K-ENG-AVV--T----R---DFLKKMKDGAILVNCARGQLVD  240 (331)
T ss_dssp             CCCC--T-TTC-CSB--C----H---HHHHTSCTTEEEEECSCGGGBC
T ss_pred             cCCc--h-HHH-HHh--C----H---HHHhhCCCCcEEEECCCccccc
Confidence            5321  1 111 122  2    1   2233345789999885  3455

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.09  E-value=0.0091  Score=56.26  Aligned_cols=96  Identities=17%  Similarity=0.219  Sum_probs=61.1

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      +...++|+|||. |.||..+|..+...|.  +|+.+|...... ...++       .+..   ..++++.++.||+|+++
T Consensus       188 ~l~gktvGIIGl-G~IG~~vA~~l~a~G~--~V~~~d~~~~~~~~~~~~-------G~~~---~~~l~ell~~aDvV~l~  254 (393)
T 2nac_A          188 DLEAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKEL-------NLTW---HATREDMYPVCDVVTLN  254 (393)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHH-------TCEE---CSSHHHHGGGCSEEEEC
T ss_pred             cCCCCEEEEEeE-CHHHHHHHHHHHhCCC--EEEEEcCCccchhhHhhc-------Ccee---cCCHHHHHhcCCEEEEe
Confidence            456679999995 9999999999887776  899999865321 11111       1111   12566889999999998


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ....  + ++| .++  |    .   +.+....|++++|+++-
T Consensus       255 ~Plt--~-~t~-~li--~----~---~~l~~mk~gailIN~aR  284 (393)
T 2nac_A          255 CPLH--P-ETE-HMI--N----D---ETLKLFKRGAYIVNTAR  284 (393)
T ss_dssp             SCCC--T-TTT-TCB--S----H---HHHTTSCTTEEEEECSC
T ss_pred             cCCc--h-HHH-HHh--h----H---HHHhhCCCCCEEEECCC
Confidence            5321  1 121 122  1    1   22334457899998853

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=96.07  E-value=0.054  Score=43.27  Aligned_cols=106  Identities=14%  Similarity=0.112  Sum_probs=62.7

Q ss_pred             CceEEEEcCC---CChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           28 DRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        28 ~~KI~IIGaa---G~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      +.+|+|||++   |.+|..++..|...|+  +  +|++++.+ +.  ++.      .+..+   .++.+.-+..|+++++
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~--~--v~~vnp~~~~~--~i~------G~~~~---~sl~el~~~vDlavi~   77 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY--R--VLPVNPRFQGE--ELF------GEEAV---ASLLDLKEPVDILDVF   77 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTC--E--EEEECGGGTTS--EET------TEECB---SSGGGCCSCCSEEEEC
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHHHCCC--E--EEEeCCCcccC--cCC------CEEec---CCHHHCCCCCCEEEEE
Confidence            4689999976   7999999999999887  5  55554432 11  111      22322   2344444679999998


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG  172 (300)
                      ..                .+.+.++++++.+...+++++..+-..+    -+.+..+..|    -+++|
T Consensus        78 vp----------------~~~~~~v~~~~~~~gi~~i~~~~g~~~~----~~~~~a~~~G----ir~vg  122 (140)
T 1iuk_A           78 RP----------------PSALMDHLPEVLALRPGLVWLQSGIRHP----EFEKALKEAG----IPVVA  122 (140)
T ss_dssp             SC----------------HHHHTTTHHHHHHHCCSCEEECTTCCCH----HHHHHHHHTT----CCEEE
T ss_pred             eC----------------HHHHHHHHHHHHHcCCCEEEEcCCcCHH----HHHHHHHHcC----CEEEc
Confidence            42                2445555666666666665443222222    2344555554    36777

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=96.07  E-value=0.02  Score=52.74  Aligned_cols=72  Identities=18%  Similarity=0.268  Sum_probs=43.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      +++||+|+||+|.+|..+...|..+++ .-|++.+......|....+.+    ..+....  .+. +.++++|+||.+.|
T Consensus         2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~----~~i~~~~--~~~-~~~~~vDvVf~a~g   74 (336)
T 2r00_A            2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNG----KTVRVQN--VEE-FDWSQVHIALFSAG   74 (336)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETT----EEEEEEE--GGG-CCGGGCSEEEECSC
T ss_pred             CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecC----ceeEEec--CCh-HHhcCCCEEEECCC
Confidence            468999999999999999988887731 126666653222222111111    1222211  122 35679999999865

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=96.06  E-value=0.011  Score=54.33  Aligned_cols=106  Identities=24%  Similarity=0.289  Sum_probs=66.2

Q ss_pred             cccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC
Q 022263           16 AGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE   95 (300)
Q Consensus        16 ~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~   95 (300)
                      .|.+.. ......++|+|||. |.+|..+|..+...|.  +|..||.......  .+.      ..  + ...++++.++
T Consensus       129 ~W~~~~-~~~l~g~tvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~--~~~------~~--~-~~~~l~ell~  193 (324)
T 3hg7_A          129 LWQSHP-YQGLKGRTLLILGT-GSIGQHIAHTGKHFGM--KVLGVSRSGRERA--GFD------QV--Y-QLPALNKMLA  193 (324)
T ss_dssp             CCCCCC-CCCSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCCCT--TCS------EE--E-CGGGHHHHHH
T ss_pred             CCcCCC-CcccccceEEEEEE-CHHHHHHHHHHHhCCC--EEEEEcCChHHhh--hhh------cc--c-ccCCHHHHHh
Confidence            454432 23445679999995 9999999999998887  8999998642111  010      11  1 1246778899


Q ss_pred             CCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCc
Q 022263           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN  149 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d  149 (300)
                      +||+|+++....  + .++. ++  |.       +.+....|++++|+++  .++|
T Consensus       194 ~aDvV~l~lPlt--~-~T~~-li--~~-------~~l~~mk~gailIN~aRG~~vd  236 (324)
T 3hg7_A          194 QADVIVSVLPAT--R-ETHH-LF--TA-------SRFEHCKPGAILFNVGRGNAIN  236 (324)
T ss_dssp             TCSEEEECCCCC--S-SSTT-SB--CT-------TTTTCSCTTCEEEECSCGGGBC
T ss_pred             hCCEEEEeCCCC--H-HHHH-Hh--HH-------HHHhcCCCCcEEEECCCchhhC
Confidence            999999985321  1 1221 12  11       1233345799999985  4566

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.05  E-value=0.021  Score=49.69  Aligned_cols=113  Identities=19%  Similarity=0.168  Sum_probs=64.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc---cccc------cCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQA------LEDS   97 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a------~~~a   97 (300)
                      .+.+.|+||+|.+|.+++..|+..|.  +|++.|.+..+ ...++..     .+..+.. -+|   .+++      +...
T Consensus         9 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~-~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~g~i   80 (257)
T 3tl3_A            9 DAVAVVTGGASGLGLATTKRLLDAGA--QVVVLDIRGED-VVADLGD-----RARFAAADVTDEAAVASALDLAETMGTL   80 (257)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCHH-HHHHTCT-----TEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCchHH-HHHhcCC-----ceEEEECCCCCHHHHHHHHHHHHHhCCC
Confidence            34789999999999999999999887  89999984321 1112211     1222111 011   1122      3489


Q ss_pred             CEEEEcCCCCCCC-------CC---cchhhhhhhHHHH----HHHHHHHHhh-------CCCeEEEEecCCC
Q 022263           98 DVVIIPAGVPRKP-------GM---TRDDLFNINAGIV----KDLCSAIAKY-------CPNAIVNMISNPV  148 (300)
Q Consensus        98 DiVIi~ag~~~~~-------g~---~r~dl~~~N~~i~----~~i~~~i~~~-------~p~a~viv~tNP~  148 (300)
                      |++|..||.....       ..   +..+.+..|+.-.    +...+.+.+.       ...+.+|+++.-.
T Consensus        81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~  152 (257)
T 3tl3_A           81 RIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVA  152 (257)
T ss_dssp             EEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC
T ss_pred             CEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchh
Confidence            9999999864210       01   1233455565544    4444444432       3456777776544

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=96.05  E-value=0.021  Score=50.19  Aligned_cols=156  Identities=15%  Similarity=0.139  Sum_probs=85.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc-----ccHHHHhccccCCCcEEEEec-CCc---cccc-----
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-----PGVAADVGHINTRSEVAGYMG-NDQ---LGQA-----   93 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~-----~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-----   93 (300)
                      .+.+.|+||+|.+|.+++..|+..|.  ++++.|....     +....++....  ..+..+.. -+|   .++.     
T Consensus        11 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~   86 (262)
T 3ksu_A           11 NKVIVIAGGIKNLGALTAKTFALESV--NLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFAE   86 (262)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHTTSSC--EEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence            34799999999999999999999987  8999876421     11222333221  12332211 112   1122     


Q ss_pred             --cCCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCcccHHHHHHHHHHhCC
Q 022263           94 --LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (300)
Q Consensus        94 --~~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~~~i~~~~~~~~~~  164 (300)
                        +...|++|..||......   .+   -...+..|+.-...+.+.+..+ .+.+.+|+++....    .     .-   
T Consensus        87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~----~-----~~---  154 (262)
T 3ksu_A           87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLL----A-----AY---  154 (262)
T ss_dssp             HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHH----H-----HH---
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhh----c-----cC---
Confidence              237899999999753221   11   1234556776666666666554 23566777764332    1     11   


Q ss_pred             CCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       165 ~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                      .+..-.++.+..--..+.+.+|.+++  +..|++..+
T Consensus       155 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  189 (262)
T 3ksu_A          155 TGFYSTYAGNKAPVEHYTRAASKELM--KQQISVNAI  189 (262)
T ss_dssp             HCCCCC-----CHHHHHHHHHHHHTT--TTTCEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHH--HcCcEEEEE
Confidence            23334456654444557778888874  344544433

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.04  E-value=0.036  Score=49.53  Aligned_cols=115  Identities=11%  Similarity=0.032  Sum_probs=67.8

Q ss_pred             CceEEEEcCCC--ChHHHHHHHHHhCCCCCEEEEEecCCcccH-HHHhccccCCCcEEEEec-CCc---cccc-------
Q 022263           28 DRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGHINTRSEVAGYMG-NDQ---LGQA-------   93 (300)
Q Consensus        28 ~~KI~IIGaaG--~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~-t~d---~~~a-------   93 (300)
                      .+++.|+||+|  .+|..++..|+..|.  +|++.|++..... ..++......  +..+.. -+|   .+++       
T Consensus        30 ~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           30 GKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESLGV--KLTVPCDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHHTC--CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCC--eEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45799999876  999999999999987  8999998653211 1222111111  111110 112   1222       


Q ss_pred             cCCCCEEEEcCCCCCC-----C--CCc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~-----~--g~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (300)
                      +...|++|..||....     +  ..+   -...+..|+.-...+.+.+..+- ..+.||++|.
T Consensus       106 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS  169 (296)
T 3k31_A          106 WGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY  169 (296)
T ss_dssp             HSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             cCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence            2478999999997532     1  112   22345567666666666666553 3577777764

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=96.04  E-value=0.045  Score=48.50  Aligned_cols=35  Identities=23%  Similarity=0.295  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.
T Consensus        23 ~k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~   57 (288)
T 2x9g_A           23 APAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNS   57 (288)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            35799999999999999999999887  899999875

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.03  E-value=0.015  Score=55.33  Aligned_cols=91  Identities=16%  Similarity=0.211  Sum_probs=59.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ...+|+|+|+ |.+|..++..+...|.  +|+.+|+++.+.. +.  .+     ....    .++++++++||+|+.+.|
T Consensus       219 ~GktV~ViG~-G~IGk~vA~~Lra~Ga--~Viv~D~dp~ra~~A~--~~-----G~~v----~~Leeal~~ADIVi~atg  284 (435)
T 3gvp_A          219 GGKQVVVCGY-GEVGKGCCAALKAMGS--IVYVTEIDPICALQAC--MD-----GFRL----VKLNEVIRQVDIVITCTG  284 (435)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHH--HT-----TCEE----CCHHHHTTTCSEEEECSS
T ss_pred             cCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEeCChhhhHHHH--Hc-----CCEe----ccHHHHHhcCCEEEECCC
Confidence            4469999996 9999999999988887  8999998653221 11  11     1111    246789999999999743


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (300)
                      .+   +.     +  |    .+.   +....|++++++++.+-
T Consensus       285 t~---~l-----I--~----~e~---l~~MK~gailINvgrg~  310 (435)
T 3gvp_A          285 NK---NV-----V--T----REH---LDRMKNSCIVCNMGHSN  310 (435)
T ss_dssp             CS---CS-----B--C----HHH---HHHSCTTEEEEECSSTT
T ss_pred             Cc---cc-----C--C----HHH---HHhcCCCcEEEEecCCC
Confidence            21   11     1  1    122   23345789999998763

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=96.03  E-value=0.024  Score=45.68  Aligned_cols=85  Identities=12%  Similarity=0.064  Sum_probs=50.9

Q ss_pred             CceEEEEcCC---CChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           28 DRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaa---G~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +.+|+|||++   |.+|..++..|...|+  +|+.+|.......   +.      .+..+   .++.+.-+++|+|+++.
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~--~v~~vnp~~~g~~---i~------G~~~~---~sl~el~~~~Dlvii~v   78 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGY--HVIPVSPKVAGKT---LL------GQQGY---ATLADVPEKVDMVDVFR   78 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTC--CEEEECSSSTTSE---ET------TEECC---SSTTTCSSCCSEEECCS
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCC--EEEEeCCcccccc---cC------Ceecc---CCHHHcCCCCCEEEEEe
Confidence            4589999965   7899999999988887  5555554321011   11      22322   23445556899999984


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEE
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN  142 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~vi  142 (300)
                      ..                +.+.++++.+.+....++++
T Consensus        79 p~----------------~~v~~v~~~~~~~g~~~i~i  100 (145)
T 2duw_A           79 NS----------------EAAWGVAQEAIAIGAKTLWL  100 (145)
T ss_dssp             CS----------------THHHHHHHHHHHHTCCEEEC
T ss_pred             CH----------------HHHHHHHHHHHHcCCCEEEE
Confidence            21                22344444455566676554

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=96.00  E-value=0.0094  Score=52.22  Aligned_cols=115  Identities=12%  Similarity=0.076  Sum_probs=67.0

Q ss_pred             CceEEEEcCC--CChHHHHHHHHHhCCCCCEEEEEecCCc-ccHHHHhccccCCCcEEEEec-CCc---ccccc------
Q 022263           28 DRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMG-NDQ---LGQAL------   94 (300)
Q Consensus        28 ~~KI~IIGaa--G~VG~~~a~~L~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a~------   94 (300)
                      .+++.|+||+  |.+|.+++..|+..|.  +|++.|++.. .....++.....  .+..+.. -+|   .++++      
T Consensus         8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~   83 (261)
T 2wyu_A            8 GKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELDALFAGVKEA   83 (261)
T ss_dssp             TCEEEEESCCSSSSHHHHHHHHHHHHTC--EEEEEESCGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CcEEEECCCCCHHHHHHHHHHHHHH
Confidence            3579999998  8999999999999887  8999998642 112223322111  1111111 112   22222      


Q ss_pred             -CCCCEEEEcCCCCCC-----C--CCc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263           95 -EDSDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (300)
Q Consensus        95 -~~aDiVIi~ag~~~~-----~--g~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (300)
                       ...|++|..||....     +  ..+   ....+..|+.-...+.+.+.++- ..+.+|++|.
T Consensus        84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  147 (261)
T 2wyu_A           84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY  147 (261)
T ss_dssp             HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred             cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence             278999999997532     1  111   22345667666666666665442 1356777764

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.00  E-value=0.0081  Score=56.02  Aligned_cols=100  Identities=20%  Similarity=0.272  Sum_probs=62.7

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCE-EEEEecCCcccH-HHHhccccCCCcEEEEecCCccccccCCCCEEE
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSR-LALYDIANTPGV-AADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~e-l~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      .....++|+|||. |.||..++..+...|.  + |..+|....... ..++       .+..   ..++++.+++||+|+
T Consensus       160 ~~l~g~tvgIIG~-G~IG~~vA~~l~~~G~--~~V~~~d~~~~~~~~~~~~-------g~~~---~~~l~ell~~aDvV~  226 (364)
T 2j6i_A          160 YDIEGKTIATIGA-GRIGYRVLERLVPFNP--KELLYYDYQALPKDAEEKV-------GARR---VENIEELVAQADIVT  226 (364)
T ss_dssp             CCSTTCEEEEECC-SHHHHHHHHHHGGGCC--SEEEEECSSCCCHHHHHHT-------TEEE---CSSHHHHHHTCSEEE
T ss_pred             ccCCCCEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCCccchhHHHhc-------CcEe---cCCHHHHHhcCCEEE
Confidence            3456679999995 9999999998887675  5 999997653222 1111       1221   135678889999999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC--CCc
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--PVN  149 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN--P~d  149 (300)
                      ++....  + +++ .++  |    .   +.+....|++++|+++.  ++|
T Consensus       227 l~~P~t--~-~t~-~li--~----~---~~l~~mk~ga~lIn~arG~~vd  263 (364)
T 2j6i_A          227 VNAPLH--A-GTK-GLI--N----K---ELLSKFKKGAWLVNTARGAICV  263 (364)
T ss_dssp             ECCCCS--T-TTT-TCB--C----H---HHHTTSCTTEEEEECSCGGGBC
T ss_pred             ECCCCC--h-HHH-HHh--C----H---HHHhhCCCCCEEEECCCCchhC
Confidence            986322  1 111 122  1    1   22334457899998864  455

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=95.99  E-value=0.0036  Score=54.27  Aligned_cols=106  Identities=15%  Similarity=0.173  Sum_probs=64.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHh-CCCCCEEEEEecCCc-ccH-----HHHhccccCCCcEEEEecCCccccc-----c
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANT-PGV-----AADVGHINTRSEVAGYMGNDQLGQA-----L   94 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~-~~~~~el~L~D~~~~-~g~-----~~dl~~~~~~~~v~~~~~t~d~~~a-----~   94 (300)
                      +++++.|+||+|.+|.+++..|+. .+.  .+++.|+++. ...     ..|+.+..            +.++.     .
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~--~v~~~~~~~~~~~~~~~~~~~Dv~~~~------------~v~~~~~~~~~   68 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNH--TVINIDIQQSFSAENLKFIKADLTKQQ------------DITNVLDIIKN   68 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTE--EEEEEESSCCCCCTTEEEEECCTTCHH------------HHHHHHHHTTT
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCc--EEEEeccccccccccceEEecCcCCHH------------HHHHHHHHHHh
Confidence            456799999999999999999988 565  7889988643 111     11222111            11111     2


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (300)
                      ...|++|..||.....   ..+   ....+..|+.-...+.+.+.++- ..+.+|+++.
T Consensus        69 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS  127 (244)
T 4e4y_A           69 VSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGS  127 (244)
T ss_dssp             CCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECC
T ss_pred             CCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECC
Confidence            3789999999975321   112   22345667666666666665542 2356666653

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=95.99  E-value=0.024  Score=55.26  Aligned_cols=135  Identities=16%  Similarity=0.165  Sum_probs=77.5

Q ss_pred             CCceEEEEcCCCChHHH-HHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~-~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      +.+||.+||. |-.|.+ +|..|...|.  +|...|..........|+..    .+..+.+. +.+....++|+||.+.|
T Consensus        18 ~~~~i~~iGi-Gg~Gms~lA~~l~~~G~--~V~~sD~~~~~~~~~~L~~~----gi~~~~G~-~~~~~~~~~d~vV~Spg   89 (524)
T 3hn7_A           18 QGMHIHILGI-CGTFMGSLALLARALGH--TVTGSDANIYPPMSTQLEQA----GVTIEEGY-LIAHLQPAPDLVVVGNA   89 (524)
T ss_dssp             -CCEEEEETT-TSHHHHHHHHHHHHTTC--EEEEEESCCCTTHHHHHHHT----TCEEEESC-CGGGGCSCCSEEEECTT
T ss_pred             cCCEEEEEEe-cHhhHHHHHHHHHhCCC--EEEEECCCCCcHHHHHHHHC----CCEEECCC-CHHHcCCCCCEEEECCC
Confidence            4569999996 999975 6888888898  99999986532222234432    23333332 33333368999999988


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEe--cCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMI--SNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~--tNP~d~~~~i~~~~~~~~~~~~~~kviG  172 (300)
                      .|...- ......+.+++++.+. +.+.+. .++..+|-+  ||==.+.+.+++++++..| +++..++|
T Consensus        90 i~~~~p-~l~~a~~~gi~v~~~~-e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G-~~~~~~iG  156 (524)
T 3hn7_A           90 MKRGMD-VIEYMLDTGLRYTSGP-QFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAG-IDAGFLIG  156 (524)
T ss_dssp             CCTTSH-HHHHHHHHTCCEEEHH-HHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTT-CCCEEECS
T ss_pred             cCCCCH-HHHHHHHCCCcEEEHH-HHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcC-CCceEEEC
Confidence            764211 1111223445554432 222222 233344445  4444456677888888876 65544444

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=95.98  E-value=0.0025  Score=56.42  Aligned_cols=112  Identities=21%  Similarity=0.247  Sum_probs=64.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-----HHHhccccCCCcEEEEecCCccccccCCCCEEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----AADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-----~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.....     ..|+.+..   .+...  .....+.+...|++|.
T Consensus        28 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~Dv~~~~---~~~~~--~~~~~~~~g~iD~lvn  100 (266)
T 3uxy_A           28 GKVALVTGAAGGIGGAVVTALRAAGA--RVAVADRAVAGIAADLHLPGDLREAA---YADGL--PGAVAAGLGRLDIVVN  100 (266)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEECSSCCTTSCCSEECCCCTTSHH---HHHHH--HHHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHhhhccCcCCCCHH---HHHHH--HHHHHHhcCCCCEEEE
Confidence            34789999999999999999999987  8999998542111     11221111   00000  0011233458999999


Q ss_pred             cCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecCC
Q 022263          103 PAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus       103 ~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                      .||......   .+   ....+..|+.    +.+.+.+.+++.. .+.||++|..
T Consensus       101 nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~  154 (266)
T 3uxy_A          101 NAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAG-GGAIVNVASC  154 (266)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCS
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECCH
Confidence            999753211   11   1223445544    4455555555543 5667766643

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=95.98  E-value=0.015  Score=52.49  Aligned_cols=74  Identities=18%  Similarity=0.144  Sum_probs=44.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC--CCcEEEEecCCccccccCCCCEEEEc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~--~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      .++||+|+||+|.||+.++..+.+.+-+.=+..+|.......-.|+.....  +..+..   ++|+++.+.++|+||-.
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v---~~dl~~ll~~aDVvIDF   95 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRI---TDDPESAFSNTEGILDF   95 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBC---BSCHHHHTTSCSEEEEC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCcee---eCCHHHHhcCCCEEEEc
Confidence            457999999889999999988886653322345576432111112222211  112322   35787888999999865

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=95.97  E-value=0.007  Score=56.11  Aligned_cols=74  Identities=16%  Similarity=0.269  Sum_probs=48.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ...+|+|||+ |.+|...+..|....-..+|.++|+++.+.+  +.++... ....+..   .+++++++++||+||.+.
T Consensus       128 ~~~~v~iIGa-G~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~-~g~~~~~---~~~~~eav~~aDiVi~aT  202 (350)
T 1x7d_A          128 NARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY-SGLTIRR---ASSVAEAVKGVDIITTVT  202 (350)
T ss_dssp             TCCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC-TTCEEEE---CSSHHHHHTTCSEEEECC
T ss_pred             cCCeEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc-cCceEEE---eCCHHHHHhcCCEEEEec
Confidence            4569999995 9999998876654222468999998754332  2233221 0112332   346778899999999985


Q ss_pred             C
Q 022263          105 G  105 (300)
Q Consensus       105 g  105 (300)
                      .
T Consensus       203 p  203 (350)
T 1x7d_A          203 A  203 (350)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.053  Score=48.33  Aligned_cols=117  Identities=18%  Similarity=0.189  Sum_probs=64.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCC-CEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---cc-------ccc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLV-SRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---LG-------QAL   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~-~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~-------~a~   94 (300)
                      +++.|+||+|.+|..++..|+..|.. ..|++.|++...  ....++........+..+.. -+|   .+       +.+
T Consensus        34 k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  113 (287)
T 3rku_A           34 KTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEF  113 (287)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCGGG
T ss_pred             CEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            47999999999999999999876531 278999986432  22223322111112222211 111   11       223


Q ss_pred             CCCCEEEEcCCCCCCCC----Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG----MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g----~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|..||.....+    .+   -.+.+..|+.    +.+.+.+.+++.. .+.||+++.
T Consensus       114 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS  175 (287)
T 3rku_A          114 KDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKN-SGDIVNLGS  175 (287)
T ss_dssp             CSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEECC
Confidence            47899999999753211    12   1233445544    4455555555543 456666654

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=95.97  E-value=0.021  Score=49.75  Aligned_cols=115  Identities=11%  Similarity=0.099  Sum_probs=63.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEecC-Cc---ccccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN-DQ---LGQAL-------   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~-------   94 (300)
                      ++++.|+||+|.+|.+++..|+..|.  ++++.+.+...  ....++... ....+..+... +|   .++++       
T Consensus         7 ~k~vlVTGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   83 (264)
T 3i4f_A            7 VRHALITAGTKGLGKQVTEKLLAKGY--SVTVTYHSDTTAMETMKETYKD-VEERLQFVQADVTKKEDLHKIVEEAMSHF   83 (264)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHTGG-GGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCEEEEeCCCchhHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHh-cCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45789999999999999999999987  89998775421  111111111 11123332211 12   22222       


Q ss_pred             CCCCEEEEcCCC--CC-CC--CCcc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGV--PR-KP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~--~~-~~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|..||.  .. .+  ..+.   .+.+..|+.    +.+.+.+.+++.. .+.+|+++.
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~iss  146 (264)
T 3i4f_A           84 GKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQN-FGRIINYGF  146 (264)
T ss_dssp             SCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CCeEEEEee
Confidence            388999999994  21 11  1111   223445544    4445555555553 456666653

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.96  E-value=0.012  Score=52.50  Aligned_cols=78  Identities=17%  Similarity=0.187  Sum_probs=50.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEecC--CccccccCCCCEEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGN--DQLGQALEDSDVVII  102 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~t--~d~~~a~~~aDiVIi  102 (300)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|++..+.  .+.++.... ...+.....+  .+.++.++++|+||.
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~--~V~i~~R~~~~~~~l~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~DvlVn  194 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRF-KVNVTAAETADDASRAEAVKGAHFVFT  194 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHH-TCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCHHHHHHHHHHHHhcC-CcEEEEecCCCHHHHHHHHHhCCEEEE
Confidence            345899999889999999999999886  799999864322  222332210 1111111111  234566888999999


Q ss_pred             cCCCC
Q 022263          103 PAGVP  107 (300)
Q Consensus       103 ~ag~~  107 (300)
                      ++|..
T Consensus       195 ~ag~g  199 (287)
T 1lu9_A          195 AGAIG  199 (287)
T ss_dssp             CCCTT
T ss_pred             CCCcc
Confidence            99754

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=95.93  E-value=0.012  Score=51.71  Aligned_cols=116  Identities=16%  Similarity=0.155  Sum_probs=68.5

Q ss_pred             CCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc------cccc
Q 022263           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ------LGQA   93 (300)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d------~~~a   93 (300)
                      |..+-.+-+.+.|+||++-+|..++..|++.|.  .|++.|++.....     .. ....+..+.. -+|      .-+.
T Consensus         4 f~~dlf~GK~alVTGas~GIG~aia~~la~~Ga--~Vv~~~~~~~~~~-----~~-~~~~~~~~~~Dv~~~~~v~~~~~~   75 (242)
T 4b79_A            4 FQHDIYAGQQVLVTGGSSGIGAAIAMQFAELGA--EVVALGLDADGVH-----AP-RHPRIRREELDITDSQRLQRLFEA   75 (242)
T ss_dssp             BCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTSTT-----SC-CCTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHh-----hh-hcCCeEEEEecCCCHHHHHHHHHh
Confidence            444444556889999999999999999999997  8999999653111     00 0001111110 011      2245


Q ss_pred             cCCCCEEEEcCCCCCCCCC-c---chhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRKPGM-T---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g~-~---r~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +...|++|..||..+...+ +   ....+.-|+    -..+...+.+++.  .+.||+++.
T Consensus        76 ~g~iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~--~G~IVnisS  134 (242)
T 4b79_A           76 LPRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQR--GGSILNIAS  134 (242)
T ss_dssp             CSCCSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCeEEEEee
Confidence            7789999999997532211 1   112333343    3445566666553  477777753

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=95.90  E-value=0.016  Score=55.92  Aligned_cols=115  Identities=15%  Similarity=0.158  Sum_probs=69.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-----cHHHHhccccCCCcEEEEecC-Cc---cccccCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-----GVAADVGHINTRSEVAGYMGN-DQ---LGQALEDS   97 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-----g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~~~a   97 (300)
                      +..+|.|+||+|.+|..++..|+..+. ..|++++++...     ....++....  ..+..+.+. +|   +.+.++.+
T Consensus       225 ~~~~vLITGgtGgIG~~la~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~g--~~v~~~~~Dv~d~~~v~~~~~~i  301 (486)
T 2fr1_A          225 PTGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEALG--ARTTVAACDVTDRESVRELLGGI  301 (486)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCC-CEEEEEcCCCCCcHHHHHHHHHHHhcC--CEEEEEEeCCCCHHHHHHHHHHH
Confidence            346899999999999999999998775 359999986421     1122333221  133332211 12   23334444


Q ss_pred             ------CEEEEcCCCCCCCC---Cc---chhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263           98 ------DVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        98 ------DiVIi~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                            |.||++||......   .+   -...+..|+.-...+.+.+.+.. ...||++|
T Consensus       302 ~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~-~~~~V~~S  360 (486)
T 2fr1_A          302 GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELD-LTAFVLFS  360 (486)
T ss_dssp             CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSC-CSEEEEEE
T ss_pred             HhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCC-CCEEEEEc
Confidence                  99999999754221   12   12345567777777887776653 34555554

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=95.89  E-value=0.0082  Score=56.33  Aligned_cols=97  Identities=22%  Similarity=0.328  Sum_probs=61.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ...++|+|||. |.||+.+|..+...|.  +|..+|.....     ....     ..    ..++++.+++||+|++...
T Consensus       117 l~gktvGIIGl-G~IG~~vA~~l~a~G~--~V~~~d~~~~~-----~~~~-----~~----~~sl~ell~~aDiV~l~~P  179 (381)
T 3oet_A          117 LRDRTIGIVGV-GNVGSRLQTRLEALGI--RTLLCDPPRAA-----RGDE-----GD----FRTLDELVQEADVLTFHTP  179 (381)
T ss_dssp             GGGCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECHHHHH-----TTCC-----SC----BCCHHHHHHHCSEEEECCC
T ss_pred             cCCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCChHH-----hccC-----cc----cCCHHHHHhhCCEEEEcCc
Confidence            34569999995 9999999999998887  99999873211     0110     01    1356788999999999864


Q ss_pred             CCCCCCC--cchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec--CCCcc
Q 022263          106 VPRKPGM--TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVNS  150 (300)
Q Consensus       106 ~~~~~g~--~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d~  150 (300)
                      ... .|.  ++ .++  |.       +.+....|++++|+++  .++|.
T Consensus       180 lt~-~g~~~T~-~li--~~-------~~l~~mk~gailIN~aRG~vvde  217 (381)
T 3oet_A          180 LYK-DGPYKTL-HLA--DE-------TLIRRLKPGAILINACRGPVVDN  217 (381)
T ss_dssp             CCC-SSTTCCT-TSB--CH-------HHHHHSCTTEEEEECSCGGGBCH
T ss_pred             CCc-cccccch-hhc--CH-------HHHhcCCCCcEEEECCCCcccCH
Confidence            321 111  22 122  22       2234445788998885  45663

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=95.88  E-value=0.029  Score=49.42  Aligned_cols=115  Identities=14%  Similarity=0.090  Sum_probs=67.9

Q ss_pred             CceEEEEcCC--CChHHHHHHHHHhCCCCCEEEEEecCCc-ccHHHHhccccCCCcEEEEec-CCc---cccc-------
Q 022263           28 DRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMG-NDQ---LGQA-------   93 (300)
Q Consensus        28 ~~KI~IIGaa--G~VG~~~a~~L~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------   93 (300)
                      .+++.|+||+  |.+|.+++..|+..|.  +|++.|++.. .....++......  +..+.. -+|   .+++       
T Consensus         6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~--~~~~~~D~~~~~~v~~~~~~~~~~   81 (275)
T 2pd4_A            6 GKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNS--PYVYELDVSKEEHFKSLYNSVKKD   81 (275)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTC--CCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEcCCCCHHHHHHHHHHHHHH
Confidence            3579999998  8999999999999987  8999998653 1122233221110  111110 112   1122       


Q ss_pred             cCCCCEEEEcCCCCCC-----C--CCc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~-----~--g~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (300)
                      +...|++|..||....     +  ..+   ....+..|..-...+.+.+.++- +.+.||++|.
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  145 (275)
T 2pd4_A           82 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY  145 (275)
T ss_dssp             TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             cCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEec
Confidence            2367999999997532     1  111   22345667766666666665542 2367777764

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=95.88  E-value=0.026  Score=48.67  Aligned_cols=109  Identities=17%  Similarity=0.172  Sum_probs=57.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec----------CCccccccCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----------NDQLGQALEDS   97 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----------t~d~~~a~~~a   97 (300)
                      .+++.|+||+|.+|.+++..|+. +.  .++++|.+.....  ++.+..   .+..+..          ..+..+.+...
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~-g~--~v~~~~r~~~~~~--~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~i   76 (245)
T 3e9n_A            5 KKIAVVTGATGGMGIEIVKDLSR-DH--IVYALGRNPEHLA--ALAEIE---GVEPIESDIVKEVLEEGGVDKLKNLDHV   76 (245)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHTT-TS--EEEEEESCHHHHH--HHHTST---TEEEEECCHHHHHHTSSSCGGGTTCSCC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHhC-CC--eEEEEeCCHHHHH--HHHhhc---CCcceecccchHHHHHHHHHHHHhcCCC
Confidence            34789999999999999999987 54  7999988543211  111110   1111110          00111234579


Q ss_pred             CEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           98 DVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        98 DiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      |++|.+||......   .+   -...+..|+.    +.+.+.+.+++..  +.+|+++.
T Consensus        77 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--g~iv~isS  133 (245)
T 3e9n_A           77 DTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS--GCVIYINS  133 (245)
T ss_dssp             SEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC-
T ss_pred             CEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEcC
Confidence            99999999753221   11   1223444543    3566666665543  56666654

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=95.87  E-value=0.025  Score=51.15  Aligned_cols=33  Identities=42%  Similarity=0.611  Sum_probs=29.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~   63 (300)
                      +.+.|+||+|.+|.+++..|+..|.  +|++.|++
T Consensus        28 k~vlVTGas~GIG~aia~~la~~G~--~Vv~~~r~   60 (322)
T 3qlj_A           28 RVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIG   60 (322)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCc
Confidence            4689999999999999999999987  89999975

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=95.86  E-value=0.011  Score=54.97  Aligned_cols=75  Identities=20%  Similarity=0.283  Sum_probs=49.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HHHhccccCCCcEEE-EecCCccccccCCCCEEEEc
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~dl~~~~~~~~v~~-~~~t~d~~~a~~~aDiVIi~  103 (300)
                      .++++|+|+|+ |.+|..++..+...|.  +|+++|++..+.. +.+.  ...  .+.. .....++++.++++|+||.+
T Consensus       164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga--~V~~~d~~~~~~~~~~~~--~g~--~~~~~~~~~~~l~~~~~~~DvVi~~  236 (369)
T 2eez_A          164 VAPASVVILGG-GTVGTNAAKIALGMGA--QVTILDVNHKRLQYLDDV--FGG--RVITLTATEANIKKSVQHADLLIGA  236 (369)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--TTT--SEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHh--cCc--eEEEecCCHHHHHHHHhCCCEEEEC
Confidence            45579999997 9999999999998887  8999998653221 1111  111  1211 11123455678899999999


Q ss_pred             CCCC
Q 022263          104 AGVP  107 (300)
Q Consensus       104 ag~~  107 (300)
                      ++.+
T Consensus       237 ~g~~  240 (369)
T 2eez_A          237 VLVP  240 (369)
T ss_dssp             CC--
T ss_pred             CCCC
Confidence            8865

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.86  E-value=0.0031  Score=59.61  Aligned_cols=77  Identities=23%  Similarity=0.232  Sum_probs=48.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCC-CEEEEEecCCcccH--HHHhccccCCCcEEEEe--c--CCccccccCC--CC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLV-SRLALYDIANTPGV--AADVGHINTRSEVAGYM--G--NDQLGQALED--SD   98 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~-~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~--~--t~d~~~a~~~--aD   98 (300)
                      |+||+|+|| |.+|+.++..|++.+.. .+|++.|++..+..  +.++.... ...+....  .  ..++++.+++  +|
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~D   78 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQ   78 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCC
Confidence            579999997 99999999999987743 58999998754322  22332210 00122211  1  1234555666  89


Q ss_pred             EEEEcCCC
Q 022263           99 VVIIPAGV  106 (300)
Q Consensus        99 iVIi~ag~  106 (300)
                      +||.+++.
T Consensus        79 vVin~ag~   86 (405)
T 4ina_A           79 IVLNIALP   86 (405)
T ss_dssp             EEEECSCG
T ss_pred             EEEECCCc
Confidence            99999863

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.83  E-value=0.016  Score=49.88  Aligned_cols=96  Identities=15%  Similarity=0.069  Sum_probs=58.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc---cccc-cCCCCEEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQA-LEDSDVVII  102 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~a-~~~aDiVIi  102 (300)
                      .++|.|+|+ |.+|..++..|...+.   ++++|.++....  .+. .    .+..+.+. ++   ++++ +++||.||+
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~~g~---v~vid~~~~~~~--~~~-~----~~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRGSEV---FVLAEDENVRKK--VLR-S----GANFVHGDPTRVSDLEKANVRGARAVIV   77 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTTSEE---EEEESCGGGHHH--HHH-T----TCEEEESCTTCHHHHHHTTCTTCSEEEE
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCe---EEEEECCHHHHH--HHh-c----CCeEEEcCCCCHHHHHhcCcchhcEEEE
Confidence            358999996 9999999998877663   888887653222  222 1    12222221 22   2233 889999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCC-eEEEEecCCCc
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN-AIVNMISNPVN  149 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~-a~viv~tNP~d  149 (300)
                      +.+..           ..|..    ++..+++.+|+ -++.-+.||-.
T Consensus        78 ~~~~d-----------~~n~~----~~~~a~~~~~~~~iia~~~~~~~  110 (234)
T 2aef_A           78 DLESD-----------SETIH----CILGIRKIDESVRIIAEAERYEN  110 (234)
T ss_dssp             CCSCH-----------HHHHH----HHHHHHHHCSSSEEEEECSSGGG
T ss_pred             cCCCc-----------HHHHH----HHHHHHHHCCCCeEEEEECCHhH
Confidence            85311           23433    44456667887 45555667765

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=95.83  E-value=0.024  Score=52.29  Aligned_cols=70  Identities=26%  Similarity=0.317  Sum_probs=41.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhC--CCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~--~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      +|||+|+||+|.+|..++..|.++  +.. +++++......+....+..    ..+....  .+. ++++++|+||++.|
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~-elv~i~s~~~~g~~~~~~g----~~i~~~~--~~~-~~~~~~DvV~~a~g   77 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLH-RLHLLASAESAGQRMGFAE----SSLRVGD--VDS-FDFSSVGLAFFAAA   77 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCS-CEEEEECTTTTTCEEEETT----EEEECEE--GGG-CCGGGCSEEEECSC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcE-EEEEEecCCCCCCccccCC----cceEEec--CCH-HHhcCCCEEEEcCC
Confidence            369999999999999999888854  333 5666643222222111111    1122111  133 34789999999876

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=95.83  E-value=0.011  Score=55.59  Aligned_cols=74  Identities=23%  Similarity=0.297  Sum_probs=44.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEE-EecCCcccHH-HHhccc----c-----CCCcEEEEecCCccccccC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLAL-YDIANTPGVA-ADVGHI----N-----TRSEVAGYMGNDQLGQALE   95 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L-~D~~~~~g~~-~dl~~~----~-----~~~~v~~~~~t~d~~~a~~   95 (300)
                      +++||+|+||+|.+|..+...|...+.+ ||.. ....+..|+. .|....    .     ....++.   . +.++.++
T Consensus        18 ~~~kVaIvGAtG~vG~ell~lL~~hp~~-el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~---~-~~~~~~~   92 (381)
T 3hsk_A           18 SVKKAGVLGATGSVGQRFILLLSKHPEF-EIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQE---C-KPEGNFL   92 (381)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCSSE-EEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEE---S-SSCTTGG
T ss_pred             CccEEEEECCCChHHHHHHHHHHcCCCc-eEEEeeccccccCCCHHHhcccccccccccccccceEEe---C-chhhhcc
Confidence            4468999999999999999888877654 7754 4444433432 222100    0     0112222   1 2222578


Q ss_pred             CCCEEEEcCC
Q 022263           96 DSDVVIIPAG  105 (300)
Q Consensus        96 ~aDiVIi~ag  105 (300)
                      ++|+||++.+
T Consensus        93 ~~Dvvf~alp  102 (381)
T 3hsk_A           93 ECDVVFSGLD  102 (381)
T ss_dssp             GCSEEEECCC
T ss_pred             cCCEEEECCC
Confidence            9999999865

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=95.81  E-value=0.023  Score=49.54  Aligned_cols=157  Identities=15%  Similarity=0.064  Sum_probs=82.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHh---CCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCcc---cccc----
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKL---NPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQL---GQAL----   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~---~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d~---~~a~----   94 (300)
                      .+++.|+||+|.+|.+++..|++   .|.  +|++.|++...  ....++........+..+.. -+|.   ++.+    
T Consensus         6 ~k~~lVTGas~gIG~~ia~~l~~~~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   83 (259)
T 1oaa_A            6 CAVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR   83 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHhhcCCC--eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence            35789999999999999999998   676  89999986432  12223322110112222211 1121   1111    


Q ss_pred             -----CCCC--EEEEcCCCCCCCC------Cc---chhhhhhhHHHHHHHHHHHHhhC-----CCeEEEEecCCCcccHH
Q 022263           95 -----EDSD--VVIIPAGVPRKPG------MT---RDDLFNINAGIVKDLCSAIAKYC-----PNAIVNMISNPVNSTVP  153 (300)
Q Consensus        95 -----~~aD--iVIi~ag~~~~~g------~~---r~dl~~~N~~i~~~i~~~i~~~~-----p~a~viv~tNP~d~~~~  153 (300)
                           ...|  ++|..||.....+      .+   ....+..|+.-...+.+.+.++-     ..+.+|++|.-...   
T Consensus        84 ~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~---  160 (259)
T 1oaa_A           84 ELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL---  160 (259)
T ss_dssp             HSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT---
T ss_pred             hccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhc---
Confidence                 2457  9999999743211      12   12345566665555555554432     23667777643221   


Q ss_pred             HHHHHHHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEEe
Q 022263          154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (300)
Q Consensus       154 i~~~~~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G  202 (300)
                              .+ .|..-.++.+..--..+.+.++.+++  +  |++..+.
T Consensus       161 --------~~-~~~~~~Y~asKaa~~~~~~~la~e~~--~--i~vn~v~  196 (259)
T 1oaa_A          161 --------QP-YKGWGLYCAGKAARDMLYQVLAAEEP--S--VRVLSYA  196 (259)
T ss_dssp             --------SC-CTTCHHHHHHHHHHHHHHHHHHHHCT--T--EEEEEEE
T ss_pred             --------CC-CCCccHHHHHHHHHHHHHHHHHhhCC--C--ceEEEec
Confidence                    01 22222222222223345667777774  2  7666553

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=95.80  E-value=0.034  Score=53.51  Aligned_cols=76  Identities=21%  Similarity=0.222  Sum_probs=47.0

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCC-C-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCc-----cccccCC
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNP-L-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ-----LGQALED   96 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~-~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d-----~~~a~~~   96 (300)
                      +..-++||.|||+ |.||+.++..|++.. + ..+|++.|.++......+....    .......+.+     +.+.+++
T Consensus         9 ~~~~~~rVlIIGa-GgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~----~~~~~~Vdadnv~~~l~aLl~~   83 (480)
T 2ph5_A            9 KILFKNRFVILGF-GCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGV----SFKLQQITPQNYLEVIGSTLEE   83 (480)
T ss_dssp             CBCCCSCEEEECC-SHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTC----EEEECCCCTTTHHHHTGGGCCT
T ss_pred             eecCCCCEEEECc-CHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCC----ceeEEeccchhHHHHHHHHhcC
Confidence            3344579999995 999999999998865 3 2589999986543322222111    1221111112     3456777


Q ss_pred             CCEEEEcC
Q 022263           97 SDVVIIPA  104 (300)
Q Consensus        97 aDiVIi~a  104 (300)
                      .|+||.++
T Consensus        84 ~DvVIN~s   91 (480)
T 2ph5_A           84 NDFLIDVS   91 (480)
T ss_dssp             TCEEEECC
T ss_pred             CCEEEECC
Confidence            79999754

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.79  E-value=0.016  Score=55.40  Aligned_cols=73  Identities=14%  Similarity=0.130  Sum_probs=47.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEE--ecC--CccccccCCCCEEEEc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY--MGN--DQLGQALEDSDVVIIP  103 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~--~~t--~d~~~a~~~aDiVIi~  103 (300)
                      +++|.|+| +|.+|.+++..|...+.  +|+++|++..+.  .++.+.. . .+...  ..+  .++.++++++|+||++
T Consensus         3 ~k~VlViG-aG~iG~~ia~~L~~~G~--~V~v~~R~~~~a--~~la~~~-~-~~~~~~~Dv~d~~~l~~~l~~~DvVIn~   75 (450)
T 1ff9_A            3 TKSVLMLG-SGFVTRPTLDVLTDSGI--KVTVACRTLESA--KKLSAGV-Q-HSTPISLDVNDDAALDAEVAKHDLVISL   75 (450)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHTTTC--EEEEEESSHHHH--HHTTTTC-T-TEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCcC--EEEEEECCHHHH--HHHHHhc-C-CceEEEeecCCHHHHHHHHcCCcEEEEC
Confidence            46899999 59999999999998885  799999864322  2232211 1 12211  111  1344667899999999


Q ss_pred             CCCC
Q 022263          104 AGVP  107 (300)
Q Consensus       104 ag~~  107 (300)
                      ++..
T Consensus        76 a~~~   79 (450)
T 1ff9_A           76 IPYT   79 (450)
T ss_dssp             CC--
T ss_pred             Cccc
Confidence            8753

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=95.78  E-value=0.026  Score=49.38  Aligned_cols=157  Identities=14%  Similarity=0.138  Sum_probs=83.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec-CCcc--cHHHHhccccCCCcEEEEec-CCc---ccccc-----
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTP--GVAADVGHINTRSEVAGYMG-NDQ---LGQAL-----   94 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~-~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~~~a~-----   94 (300)
                      +.+++.|+||+|.+|.+++..|+..|.  ++++.+. +...  ....++.....  .+..+.. -+|   .++++     
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~   82 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKLGR--SALAIKADLTNAAEVEAAISAAAD   82 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTTTS--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999987  8888844 3321  12223332211  2222211 112   22222     


Q ss_pred             --CCCCEEEEcCCCCC--CC--CCcc---hhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCC
Q 022263           95 --EDSDVVIIPAGVPR--KP--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (300)
Q Consensus        95 --~~aDiVIi~ag~~~--~~--g~~r---~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~  164 (300)
                        ...|++|..||...  .+  ..+.   ...+..|+.-...+.+.+..+- +.+.+|++|....          ...+ 
T Consensus        83 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~----------~~~~-  151 (259)
T 3edm_A           83 KFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAG----------RDGG-  151 (259)
T ss_dssp             HHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHH----------HHCC-
T ss_pred             HhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHh----------ccCC-
Confidence              37899999998642  11  1121   2345667666666666665543 2456666653211          0011 


Q ss_pred             CCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       165 ~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                      .+..-.++.+..--..+.+.+|.+++-  . |++..+
T Consensus       152 ~~~~~~Y~asKaa~~~l~~~la~e~~~--~-I~vn~v  185 (259)
T 3edm_A          152 GPGALAYATSKGAVMTFTRGLAKEVGP--K-IRVNAV  185 (259)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHTT--T-CEEEEE
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHCC--C-CEEEEE
Confidence            222222333322233466677888753  3 554444

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=95.77  E-value=0.041  Score=48.49  Aligned_cols=155  Identities=13%  Similarity=0.115  Sum_probs=82.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHHHHhccccCCCcEEEEec-CCc---cccc-------c
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG-NDQ---LGQA-------L   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------~   94 (300)
                      +.+.|+||+|.+|.+++..|+..|.  .+++.+....   +....++....  ..+..+.. -+|   .++.       +
T Consensus        28 k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~  103 (267)
T 3u5t_A           28 KVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEAF  103 (267)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999887  8888765332   11122222211  12222211 112   1122       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~  167 (300)
                      ...|++|..||......   .+   -...+..|+.-...+.+.+.+.- ..+.+|+++....           ..+ .|.
T Consensus       104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~-----------~~~-~~~  171 (267)
T 3u5t_A          104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQV-----------GLL-HPS  171 (267)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHH-----------HHC-CTT
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhh-----------ccC-CCC
Confidence            37899999999753221   11   12344567665555555554442 3567777764221           011 333


Q ss_pred             CcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          168 KKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       168 ~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                      .-.++.+..--..+.+.+|.+++  +..|++..+
T Consensus       172 ~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  203 (267)
T 3u5t_A          172 YGIYAAAKAGVEAMTHVLSKELR--GRDITVNAV  203 (267)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTT--TSCCEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHhh--hhCCEEEEE
Confidence            32333332223456677888874  445554433

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=95.76  E-value=0.0026  Score=57.02  Aligned_cols=72  Identities=22%  Similarity=0.306  Sum_probs=44.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhC-CCCCEEE-EEecCCcccHHHHhcccc--CCCcEEEEecCCccccccCCCCEEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLA-LYDIANTPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~-~~~~el~-L~D~~~~~g~~~dl~~~~--~~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      ++|||+|+|++|.+|+.++..+.+. ++  +|+ .+|.+.......|+....  ....+..   ++|+++.++++|+||.
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~--elva~~d~~~~~~~g~d~~~~~g~~~~~v~~---~~dl~~~l~~~DvVID   78 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGV--QLGAALEREGSSLLGSDAGELAGAGKTGVTV---QSSLDAVKDDFDVFID   78 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTE--ECCCEECCTTCTTCSCCTTCSSSSSCCSCCE---ESCSTTTTTSCSEEEE
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCC--EEEEEEecCchhhhhhhHHHHcCCCcCCcee---cCCHHHHhcCCCEEEE
Confidence            4589999997799999998877754 44  665 778754221111222211  0112222   2467777889999995


Q ss_pred             c
Q 022263          103 P  103 (300)
Q Consensus       103 ~  103 (300)
                      .
T Consensus        79 f   79 (273)
T 1dih_A           79 F   79 (273)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=95.76  E-value=0.012  Score=53.80  Aligned_cols=69  Identities=22%  Similarity=0.272  Sum_probs=45.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEE-EEecCCcccHHHHhccccCCCcEEEEecCCccccccC--CCCEEEEc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIP  103 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~--~aDiVIi~  103 (300)
                      +++||+|||+ |.+|...+..|...+-+ +|+ ++|+++.+..  .+.+..   ....+   +|+++.++  ++|+|+++
T Consensus         3 ~~~rvgiiG~-G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~--~~a~~~---g~~~~---~~~~~~l~~~~~D~V~i~   72 (344)
T 3euw_A            3 LTLRIALFGA-GRIGHVHAANIAANPDL-ELVVIADPFIEGAQ--RLAEAN---GAEAV---ASPDEVFARDDIDGIVIG   72 (344)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHCTTE-EEEEEECSSHHHHH--HHHHTT---TCEEE---SSHHHHTTCSCCCEEEEC
T ss_pred             CceEEEEECC-cHHHHHHHHHHHhCCCc-EEEEEECCCHHHHH--HHHHHc---CCcee---CCHHHHhcCCCCCEEEEe
Confidence            3579999995 99999998888875433 544 7888654322  222211   13333   46777787  89999997


Q ss_pred             CC
Q 022263          104 AG  105 (300)
Q Consensus       104 ag  105 (300)
                      ..
T Consensus        73 tp   74 (344)
T 3euw_A           73 SP   74 (344)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=95.75  E-value=0.028  Score=49.38  Aligned_cols=113  Identities=13%  Similarity=0.096  Sum_probs=65.0

Q ss_pred             ceEEEEcC--CCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCc---cccccC-------
Q 022263           29 RKVAVLGA--AGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQALE-------   95 (300)
Q Consensus        29 ~KI~IIGa--aG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a~~-------   95 (300)
                      +++.|+||  +|.+|.+++..|+..|.  +|++.|++.... ..++.+.. ...+..+.. -+|   .++.++       
T Consensus         8 k~vlVTGa~~s~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   83 (269)
T 2h7i_A            8 KRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRLRL-IQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEAIG   83 (269)
T ss_dssp             CEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEECSCHHH-HHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCchHHHHHHHHHHCCC--EEEEEecChHHH-HHHHHHhc-CCCceEEEccCCCHHHHHHHHHHHHHHhC
Confidence            47999998  89999999999999987  899999865321 11121111 111111111 112   222222       


Q ss_pred             ---CCCEEEEcCCCCCC------C--CCcc---hhhhhhhHHHHHHHHHHHHhhC-CCeEEEEec
Q 022263           96 ---DSDVVIIPAGVPRK------P--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (300)
Q Consensus        96 ---~aDiVIi~ag~~~~------~--g~~r---~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~t  145 (300)
                         ..|++|.+||....      +  ..+.   ...+..|+.-...+.+.+.++- +.+.+|+++
T Consensus        84 ~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  148 (269)
T 2h7i_A           84 AGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMD  148 (269)
T ss_dssp             TTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEc
Confidence               78999999997531      1  1111   2245566666666666665442 245666665

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.72  E-value=0.022  Score=51.23  Aligned_cols=99  Identities=16%  Similarity=0.269  Sum_probs=64.0

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      .....++|+|||+ |.+|..++..+...|.  +|..+|+...+..  .+.+..    .+... ..++++.+++||+|+.+
T Consensus       153 ~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~d~~~~~~~--~~~~~g----~~~~~-~~~l~~~l~~aDvVi~~  222 (300)
T 2rir_A          153 YTIHGSQVAVLGL-GRTGMTIARTFAALGA--NVKVGARSSAHLA--RITEMG----LVPFH-TDELKEHVKDIDICINT  222 (300)
T ss_dssp             SCSTTSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHHH--HHHHTT----CEEEE-GGGHHHHSTTCSEEEEC
T ss_pred             CCCCCCEEEEEcc-cHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHCC----CeEEc-hhhHHHHhhCCCEEEEC
Confidence            3456679999995 9999999999988886  8999998643221  111111    11111 13566788999999998


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec-CCCcc
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS-NPVNS  150 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t-NP~d~  150 (300)
                      ...    +     ++  |..       .+....|.+++++++ +|.++
T Consensus       223 ~p~----~-----~i--~~~-------~~~~mk~g~~lin~a~g~~~~  252 (300)
T 2rir_A          223 IPS----M-----IL--NQT-------VLSSMTPKTLILDLASRPGGT  252 (300)
T ss_dssp             CSS----C-----CB--CHH-------HHTTSCTTCEEEECSSTTCSB
T ss_pred             CCh----h-----hh--CHH-------HHHhCCCCCEEEEEeCCCCCc
Confidence            653    1     11  111       233345788888885 56653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	300
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	2e-45
d2cmda1	145	c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi	1e-36
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	9e-35
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	2e-32
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	2e-31
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	8e-31
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	1e-30
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	1e-30
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	6e-30
d1y7ta1	154	c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th	1e-29
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	1e-29
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	1e-29
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	1e-28
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	1e-28
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	4e-28
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	1e-27
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	1e-26
d1pzga1	154	c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas	3e-26
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	5e-25
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	3e-24
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	1e-23
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	4e-23
d1up7a1	162	c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther	2e-21
d1u8xx1	167	c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase	6e-19
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	1e-18
d1s6ya1	169	c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci	1e-18
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	8e-18
d1obba1	171	c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto	5e-17
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	4e-15
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	1e-14
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	2e-14
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	5e-14
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	2e-13
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	2e-13
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	2e-12
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	3e-12
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	4e-12
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	6e-12
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	1e-11
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	2e-11
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	2e-11
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	9e-11
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	9e-11
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	2e-10
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	3e-10
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	4e-09
d1edza1	171	c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehy	0.004

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  148 bits (375), Expect = 2e-45
 Identities = 99/143 (69%), Positives = 119/143 (83%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP+A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 150 STVPIAAEVFKKAGTYNEKKLFG 172
           ST+PI AEVFKK G YN  K+FG
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFG 144

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  125 bits (316), Expect = 1e-36
 Identities = 91/145 (62%), Positives = 108/145 (74%), Gaps = 3/145 (2%)

Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  DAT-PALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFG 172
           VN+TV IAAEV KKAG Y++ KLFG
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFG 145

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score =  122 bits (306), Expect = 9e-35
 Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 9/137 (6%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIANTPGVAADVGHINTRSE---V 81
            +AV GAAG I   L   +    +        L L     +      V      S    +
Sbjct: 26  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL 85

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAI 140
                     +  ED D  ++    PR PGM R  L +IN  I  D   A+      N  
Sbjct: 86  REVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVK 145

Query: 141 VNMISNPVNSTVPIAAE 157
           V ++ NP N+   I  +
Sbjct: 146 VLVVGNPCNTNALICLK 162

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  114 bits (287), Expect = 2e-32
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 7/146 (4%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN 87
           K+  +GA G +G   A    LN  V  +AL DIA     G A D+ H     +    +  
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
                 L+ S+++++ AG+ RKPGMTR DL + NAGI+KD+   I +  P + + +++NP
Sbjct: 61  GADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGV 173
           ++    I      K       ++FG+
Sbjct: 121 MDVMTYIM----WKESGKPRNEVFGM 142

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score =  112 bits (281), Expect = 2e-31
 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 8/145 (5%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
           K+AV+GA G +G  LA       +   + L DIA         D+ H ++        G+
Sbjct: 3   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 61

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D   +   D+D+V+I AG  +KPG +R +L      I+K +   + K  PNAI  +I+NP
Sbjct: 62  DDP-EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFG 172
           V+    IA  V +K     E ++FG
Sbjct: 121 VD----IATHVAQKLTGLPENQIFG 141

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  111 bits (278), Expect = 8e-31
 Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 9/141 (6%)

Query: 30  KVAVLGAAGGIGQPLALL-----MKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG- 83
           +V V GAAG I   L        +        L L DI    GV   V        +   
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64

Query: 84  --YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI- 140
              +  D+   A +D DV I+   +PR+ GM R DL   N  I K   +A+ KY   ++ 
Sbjct: 65  KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVK 124

Query: 141 VNMISNPVNSTVPIAAEVFKK 161
           V ++ NP N+    A++    
Sbjct: 125 VIVVGNPANTNCLTASKSAPS 145

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  110 bits (276), Expect = 1e-30
 Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 7/146 (4%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYMGN 87
           K+ V+GA G +G   A  +    L   L L D+      G A D+            +  
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
                   +SD+VII AG+PRKPGMTR+DL   NAGIVK++   I K+  N I+ ++SNP
Sbjct: 61  SNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGV 173
           ++    +A           ++++ G+
Sbjct: 121 LDIMTHVA----WVRSGLPKERVIGM 142

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  110 bits (276), Expect = 1e-30
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 10/147 (6%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KV+V+GAAG +G      + L  +   +   DI         VG     +    Y  N +
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP--DKEDDTVGQAADTNHGIAYDSNTR 59

Query: 90  LG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145
           +     +    SDVV+I AG+PR+PG TR DL   NA I++D+ S++ ++  + I    S
Sbjct: 60  VRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119

Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           NPV+    +      +AG  + +++ G
Sbjct: 120 NPVD----LLNRHLYEAGDRSREQVIG 142

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  108 bits (270), Expect = 6e-30
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           K+ ++G  G +G   A  + +      + L D+         +  I+             
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
               L+ SDVVI+ AGVP+KPG TR  L   NA ++K++   ++KY P++IV +++NPV+
Sbjct: 61  DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120

Query: 150 STVPIAAEVFKKAGTYNEKKLFG 172
               +    F K    + +K+FG
Sbjct: 121 ----VLTYFFLKESGMDPRKVFG 139

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  108 bits (270), Expect = 1e-29
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 12/149 (8%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVS--RLALYDIANTPGVAADVGHINTRSE------V 81
           +VAV GAAG IG  L   +    ++   +  +  +   P     +  +    E      +
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAI 140
           AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+    +  
Sbjct: 66  AGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVK 125

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKK 169
           V ++ NP N+   IA   +K A   N + 
Sbjct: 126 VLVVGNPANTNALIA---YKNAPGLNPRN 151

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score =  107 bits (269), Expect = 1e-29
 Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 11/147 (7%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH-INTRSEVAGYM 85
            KVA++GA G +G   A  M L    + L L D+      G A D+ H +    +++ Y 
Sbjct: 2   SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA 60

Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145
           G+      ++D DV+++ AG  RKPG TR DL   N  I K++   I KY  + ++ ++S
Sbjct: 61  GDYS---DVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 117

Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           NPV+    +     +K       K+ G
Sbjct: 118 NPVDIITYMI----QKWSGLPVGKVIG 140

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  108 bits (270), Expect = 1e-29
 Identities = 68/121 (56%), Positives = 86/121 (71%)

Query: 173 VTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTK 232
           VTTLD+VRA  F A    ++ A V+VPV+GGHAG TI+PL SQ TPK +   + +  LT 
Sbjct: 1   VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTG 60

Query: 233 RTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFF 292
           R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  +NG   VVECSFV+S  T+ P+F
Sbjct: 61  RIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYF 120

Query: 293 A 293
           +
Sbjct: 121 S 121

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 59/121 (48%), Positives = 78/121 (64%), Gaps = 1/121 (0%)

Query: 173 VTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTK 232
           VTTLD++R+ TF A        EV VPV+GGH+G+TILPL SQ     +  ++++  LTK
Sbjct: 1   VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGV-SFTEQEVADLTK 59

Query: 233 RTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFF 292
           R Q+ GTEVVEAKAG GSATLSM  A A F  + ++ L G   VVEC++V+       FF
Sbjct: 60  RIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFF 119

Query: 293 A 293
           +
Sbjct: 120 S 120

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  104 bits (261), Expect = 1e-28
 Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 6/145 (4%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGN 87
           +K++++GA G +G   A  +    L   + L  +   P G A D+   +        +  
Sbjct: 2   KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG 60

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
                   +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP
Sbjct: 61  TNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFG 172
           +++   +AAEV      + ++++ G
Sbjct: 121 LDAMTYLAAEVSG----FPKERVIG 141

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  104 bits (259), Expect = 4e-28
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 13/154 (8%)

Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY 84
           P  K+ ++G+ G IG  +A L+    L   + L+DI      G A D  H N  +     
Sbjct: 2   PKAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNA 139
           +        L  +DVVI+ AG  + PG +     RDDL  +N  I+ ++   I K CPNA
Sbjct: 60  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 119

Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173
            + +++NPV+  V +      +     + K+ G+
Sbjct: 120 FIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL 149

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score =  102 bits (255), Expect = 1e-27
 Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 6/149 (4%)

Query: 25  SVPDR-KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG 83
           S+P+  KV ++G  G +G   A  M    +     + D+         +   + ++  A 
Sbjct: 1   SMPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAP 59

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
                      +D+D+V+I AG P+KPG +R DL N N  I+  +   +     + I  +
Sbjct: 60  KKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV 119

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
            +NPV+    I      K   + ++++ G
Sbjct: 120 AANPVD----ILTYATWKFSGFPKERVIG 144

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score =  100 bits (249), Expect = 1e-26
 Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 8/153 (5%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS 79
              +VP+ K+ V+G  G +G   A+ +    L   LAL D+      G   D+ H +   
Sbjct: 14  EEATVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFL 72

Query: 80  EVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA 139
           +    + + +      +S +V++ AGV ++ G +R +L   N  + K +   I KY P+ 
Sbjct: 73  QTPKIVAD-KDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDC 131

Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           I+ ++SNPV+    +      K     + ++ G
Sbjct: 132 IIIVVSNPVDILTYVT----WKLSGLPKHRVIG 160

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 99.4 bits (247), Expect = 3e-26
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 14/152 (9%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +KVA++G+ G IG  +  L  L  L   + LYD+      G A D+ H+ +  +    + 
Sbjct: 8   KKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 65

Query: 87  ND-QLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
            +     AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 66  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 125

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           + +++NP++  V +  E            + G
Sbjct: 126 IIVVTNPLDCMVKVMCEASG----VPTNMICG 153

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.2 bits (239), Expect = 5e-25
 Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 16/155 (10%)

Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH----INT 77
           + +   K+ V+G  G +G   A+ + L  L   LAL D       G A D+ H    ++T
Sbjct: 15  DKLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLST 73

Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
              V G   N        +S +VII AG     G TR DL   N  I+K +   + +  P
Sbjct: 74  PKIVFGKDYNV-----SANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSP 128

Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           +  + +++NPV+    +      K   +   ++ G
Sbjct: 129 DCKIIVVTNPVDILTYVVW----KISGFPVGRVIG 159

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 94.0 bits (233), Expect = 3e-24
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 8/146 (5%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG 86
            +V V+GA G +G      +    +   + L D   +   G A D  H    +     + 
Sbjct: 7   ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW 65

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
           +        D+D+V+I AG  +KPG TR DL + N  I + +  ++       +  + +N
Sbjct: 66  HGD-YDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN 124

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFG 172
           PV+    I      K      +++ G
Sbjct: 125 PVD----ILTYATWKFSGLPHERVIG 146

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 92.1 bits (228), Expect = 1e-23
 Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 11/149 (7%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN------TRSEVAG 83
           KV ++GA+G +G   ALL+   P +  L L    ++      +          TRS+   
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
           Y+ +D+  + +++SDVVII +GVPRK GM+R DL   NA IV      IA+ C   I  +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           I+NPV+     A         +   ++FG
Sbjct: 121 ITNPVDVMTYKAL----VDSKFERNQVFG 145

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 90.9 bits (225), Expect = 4e-23
 Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 10/149 (6%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGN 87
           RK+ ++G  G +G  +A  +    +       D       A  +   +  + +  +    
Sbjct: 2   RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV 60

Query: 88  DQLGQALEDSDVVIIPAGVPR----KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
                AL D+DVVI   G  +     P   R       + +V+ + + + +   + ++ +
Sbjct: 61  INDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVV 120

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           ISNPV+    +   +F+    +   K+ G
Sbjct: 121 ISNPVD----VITALFQHVTGFPAHKVIG 145

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

 Score = 86.7 bits (214), Expect = 2e-21
 Identities = 23/167 (13%), Positives = 47/167 (28%), Gaps = 32/167 (19%)

Query: 30  KVAVLGAAGGIGQPLALLM----KLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGY 84
           ++AV+G  G    P  +        +  +  +  YDI      +  D      +      
Sbjct: 2   RIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVL 60

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA----------- 133
           + +     A+ D+  VI         G   D+   +  G++    + +            
Sbjct: 61  ISDT-FEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPI 119

Query: 134 --------KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
                   +   NA +   +NP         E  +       +K  G
Sbjct: 120 VEEYVDTVRKTSNATIVNFTNPSG----HITEFVRNY--LEYEKFIG 160

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

 Score = 80.1 bits (197), Expect = 6e-19
 Identities = 31/165 (18%), Positives = 51/165 (30%), Gaps = 30/165 (18%)

Query: 30  KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDI----ANTPGVAADVGHINTRSEV 81
            + + G  G    P   L LL  L    + +L LYD      +    A DV       ++
Sbjct: 5   SIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDI 63

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV---------------- 125
                 D   +A  D D V+    V +      D+   +  G+V                
Sbjct: 64  EFAATTDP-EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRS 122

Query: 126 ----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYN 166
                ++   + KY P+A +   SNP          +   +   N
Sbjct: 123 IGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNSKILN 167

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score = 79.0 bits (194), Expect = 1e-18
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 5/121 (4%)

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD----EDIKALT 231
           LD  R +TF A +A V+V +V   ++GGH    +            +++    + +  + 
Sbjct: 4   LDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFIAPDRLAQIV 63

Query: 232 KRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPF 291
           +RT+ GG E+V      GSA  + A A A   +A LK    V  V      Q  + ++ F
Sbjct: 64  ERTRKGGGEIVNLL-KTGSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQYGLNDIYF 122

Query: 292 F 292
            
Sbjct: 123 G 123

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 79.3 bits (195), Expect = 1e-18
 Identities = 28/172 (16%), Positives = 53/172 (30%), Gaps = 36/172 (20%)

Query: 30  KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDIANTP--GVAADVGH---INTRSE 80
           K+A +G  G    P     L+ + + L V  L L DI                 +     
Sbjct: 3   KIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGV 61

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV--------------- 125
                      +AL+ +D V     V       +D+   +  G++               
Sbjct: 62  PIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLR 121

Query: 126 -----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
                 D+   + + CP+A +   +NP      +  E   +     ++K+ G
Sbjct: 122 TIPVILDIIRDMEELCPDAWLINFTNPAG----MVTEAVLRY--TKQEKVVG 167

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score = 76.7 bits (188), Expect = 8e-18
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 5/121 (4%)

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD----EDIKALT 231
           LD  R ++F A +  V++ ++N  V+GGH    +  +         ++D    E I  L 
Sbjct: 4   LDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKLV 63

Query: 232 KRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPF 291
           +RT++GG E+VE    +GSA  + A +     ++ +     V         Q  + +   
Sbjct: 64  ERTRNGGAEIVEH-LKQGSAFYAPASSVVEMVESIVLDRKRVLPCAVGLEGQYGIDKTFV 122

Query: 292 F 292
            
Sbjct: 123 G 123

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

 Score = 74.8 bits (183), Expect = 5e-17
 Identities = 28/167 (16%), Positives = 43/167 (25%), Gaps = 34/167 (20%)

Query: 27  PDRKVAVLGAAGGIGQPLAL---LMKLNPL-VSRLALYDIA--NTPGVAADVGH-INTRS 79
           P  K+ ++GA G     L L   L K   L  S + L DI       +       +    
Sbjct: 1   PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG 59

Query: 80  EVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI------------------- 120
               +     L   + D+D VI  A V     + +                         
Sbjct: 60  ADLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDY 119

Query: 121 -------NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK 160
                        D+   I K  P A     +NP+     +      
Sbjct: 120 YTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRTVP 166

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 69.8 bits (170), Expect = 4e-15
 Identities = 26/119 (21%), Positives = 36/119 (30%), Gaps = 9/119 (7%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
           T LD  RAK   A K  V   +V   ++ G+   T  P  + A  K    +  +    K 
Sbjct: 1   TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60

Query: 234 TQDGGTEVVEA---------KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQ 283
                 E +           KA K S+ +S A A          G      V       
Sbjct: 61  DSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISD 119

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score = 68.0 bits (165), Expect = 1e-14
 Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 5/132 (3%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD-----EDIK 228
             LD  R +     +  V+    +  V+G H                 L       +D +
Sbjct: 3   CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQ 62

Query: 229 ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTE 288
              K  +D      E    KG  + ++  + A  A+  +K L  V  V         + +
Sbjct: 63  DWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKD 122

Query: 289 LPFFASKRAWKN 300
             F +      +
Sbjct: 123 NVFLSLPCVLND 134

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.6 bits (164), Expect = 2e-14
 Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 8/135 (5%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
             LD  R +     K  VN    +  V+G H   ++            L   +    T +
Sbjct: 3   CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDK 62

Query: 234 TQDGGTEVV--------EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQST 285
            +     V         E    KG  + ++  +    A + LK L  V  V         
Sbjct: 63  NKQHWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKGFHG 122

Query: 286 VTELPFFASKRAWKN 300
           + E  F +       
Sbjct: 123 IKEEVFLSIPCVLGE 137

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 5e-14
 Identities = 20/138 (14%), Positives = 42/138 (30%), Gaps = 14/138 (10%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------- 224
             LD  R +   A K  ++ +  +  ++G H   ++           +L +         
Sbjct: 3   CNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDN 62

Query: 225 --EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFV 282
             E+ K + K   +   EV++ K     A            ++ LK L+ +  V      
Sbjct: 63  DSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVA---DLIESMLKNLSRIHPVSTMVKG 119

Query: 283 QSTVTELPFFASKRAWKN 300
              +    F +       
Sbjct: 120 MYGIENEVFLSLPCILNA 137

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 64.8 bits (157), Expect = 2e-13
 Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 15/131 (11%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------- 224
           T LD  R +   A +  VNV  V+  + G H    +    S       ++D         
Sbjct: 1   TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDP 60

Query: 225 ---EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF 281
              +  + + +  ++   ++     GKG+   ++  +G    +A L   N +  V     
Sbjct: 61  LDADKREEIHQEVKNAAYKI---INGKGATNYAIGMSGVDIIEAVLHDTNRILPVSSMLK 117

Query: 282 VQSTVTELPFF 292
               ++++   
Sbjct: 118 DFHGISDICMS 128

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 64.5 bits (156), Expect = 2e-13
 Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 2/121 (1%)

Query: 171 FGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKAL 230
           FG   LD  R +   + + +  V  V   ++G H G   +P+FS+ +      +      
Sbjct: 1   FG-GRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEK 58

Query: 231 TKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELP 290
            +   D     ++    KG+     A   A   +A L     V         +    +  
Sbjct: 59  EQLLGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTA 118

Query: 291 F 291
           F
Sbjct: 119 F 119

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 62.2 bits (150), Expect = 2e-12
 Identities = 20/138 (14%), Positives = 43/138 (31%), Gaps = 12/138 (8%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------- 224
           T LD +R +   + K  V+V  V+  ++G H    +           N+ +         
Sbjct: 1   TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNF 60

Query: 225 --EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF- 281
             ED K + +  +  G  +++ K                        +  V  V+   + 
Sbjct: 61  TEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYG 120

Query: 282 VQSTVTELPFFASKRAWK 299
           ++     LP   +    +
Sbjct: 121 IEDVAISLPSIVNSEGVQ 138

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 61.8 bits (149), Expect = 3e-12
 Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 7/131 (5%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
           T+LD  R +   A   NV+   V+  ++G H G T  P++S A        E +KA  + 
Sbjct: 1   TSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTIAEWVKAHPEI 59

Query: 234 TQDGGTEVVE------AKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVT 287
            +D   ++ E       +  K         A A+   +     +    +    ++     
Sbjct: 60  KEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAILNDENAVLPLSVYMDGQYG 119

Query: 288 ELPFFASKRAW 298
               +    A 
Sbjct: 120 INDLYIGTPAV 130

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 61.3 bits (148), Expect = 4e-12
 Identities = 25/116 (21%), Positives = 31/116 (26%), Gaps = 4/116 (3%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQAT----PKANLADEDIKA 229
           T LD  RAK   A K    V  +    V G+   T+ P    A     P   L D +   
Sbjct: 2   TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYE 61

Query: 230 LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQST 285
                          +A   S+  S A A          G      V      Q  
Sbjct: 62  KVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGE 117

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 60.6 bits (146), Expect = 6e-12
 Identities = 21/133 (15%), Positives = 39/133 (29%), Gaps = 11/133 (8%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDI------ 227
           T LD  R +       +++   V+   +G H G +    +S                   
Sbjct: 2   TLLDTARMQRAVGEAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDID 60

Query: 228 -KALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTV 286
             A+ +  + GG  V+    GKG  +  +A +    A A +   +    V          
Sbjct: 61  LAAIEEEARKGGFTVL---NGKGYTSYGVATSAIRIAKAVMADAHAELVVSNRRDDMGMY 117

Query: 287 TELPFFASKRAWK 299
              P    +    
Sbjct: 118 LSYPAIIGRDGVL 130

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 59.9 bits (144), Expect = 1e-11
 Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 5/131 (3%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
           T LD +R K   A    V++ EV   ++G H G +++PL S  +       +  +     
Sbjct: 3   THLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELP 61

Query: 234 TQDGGTEVVEAKAGKGSATLSMAYAGA----IFADACLKGLNGVPDVVECSFVQSTVTEL 289
             +   +V               +  A          +     +  +      +      
Sbjct: 62  IDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRD 121

Query: 290 PFFASKRAWKN 300
                      
Sbjct: 122 VCIGVPVKIGR 132

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 59.1 bits (142), Expect = 2e-11
 Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 6/115 (5%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
           T+LD  R +     + NV+   V+  ++G H G +    +S AT       +  K     
Sbjct: 1   TSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKE-QGV 58

Query: 234 TQDGGTEVVEAKAGKG----SATLSMAYAGAIFADACLKGLNGVPDVVECSFVQS 284
           + D   ++ +    K     +   +  Y          K +    + V       
Sbjct: 59  SDDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYM 113

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 59.3 bits (143), Expect = 2e-11
 Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIK----- 228
           T LD  RAK   A KA V   +V+   + G+   T +P F  A        E IK     
Sbjct: 1   TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWL 60

Query: 229 --ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLN 271
               T   Q  G  +++      S+  S A + A    + +    
Sbjct: 61  EEEFTITVQKRGGALIQKW--GRSSAASTAVSIADAIKSLVTPTP 103

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 57.6 bits (138), Expect = 9e-11
 Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 10/126 (7%)

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLA---------DED 226
           LD  R + + A   +V+  +V   V+G H    +  +         +          ++ 
Sbjct: 4   LDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQ 63

Query: 227 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTV 286
           ++ + + T+  G E+V    G+GSA  + A +    A + L     V         +  +
Sbjct: 64  LEEIAEHTKVSGGEIVRFL-GQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGL 122

Query: 287 TELPFF 292
            ++   
Sbjct: 123 KDMFIG 128

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 57.6 bits (138), Expect = 9e-11
 Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 10/124 (8%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------- 224
           T LD  R +T  A     +   V+V V+G H    +            L +         
Sbjct: 2   TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCD 61

Query: 225 -EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQ 283
            + ++   ++T+    E++E K     A                K +  +   +E     
Sbjct: 62  SKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLEDYLGV 121

Query: 284 STVT 287
             + 
Sbjct: 122 KDLC 125

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 9/121 (7%)

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD---------ED 226
           LD  R K + + K NV   +VN  +VG H    +L           L +          +
Sbjct: 3   LDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAE 62

Query: 227 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTV 286
           ++A+  RT +   E+V   A    A  +     A      LK +     ++E  +  S +
Sbjct: 63  LEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI 122

Query: 287 T 287
            
Sbjct: 123 F 123

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 55.6 bits (133), Expect = 3e-10
 Identities = 14/124 (11%), Positives = 34/124 (27%), Gaps = 10/124 (8%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------- 224
           T LD  R +       +V    V+  ++G H    +            +           
Sbjct: 1   TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEA 60

Query: 225 -EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQ 283
            +D++ +    +D   +++E K                        +  V   ++  + +
Sbjct: 61  QKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGE 120

Query: 284 STVT 287
             V 
Sbjct: 121 RDVY 124

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score = 52.9 bits (126), Expect = 4e-09
 Identities = 22/125 (17%), Positives = 33/125 (26%), Gaps = 6/125 (4%)

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIK------A 229
           LD  RA +  A K    V+ +    V G+   T+   +  A        + I        
Sbjct: 3   LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRD 62

Query: 230 LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTEL 289
               T       +    G  SA  +   A     D  L        +   S     + E 
Sbjct: 63  TFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEG 122

Query: 290 PFFAS 294
             F  
Sbjct: 123 VIFGF 127

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 3/118 (2%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
               +  +K  V+  +  +G+PLA L+  +         +          +       E 
Sbjct: 23  EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVED 82

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPR---KPGMTRDDLFNINAGIVKDLCSAIAKYC 136
            G    D L +   DSDVVI               ++    IN    K+    + +  
Sbjct: 83  LGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNFSDDVKEKA 140

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	300
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	100.0
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	100.0
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	100.0
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	100.0
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	100.0
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	100.0
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	100.0
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	100.0
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	100.0
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	100.0
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	100.0
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.98
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.98
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.97
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.97
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.97
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.97
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.97
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.97
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	99.93
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	99.93
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.93
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.93
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.93
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	99.92
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.92
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.92
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.92
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	99.92
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.91
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	99.91
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	99.91
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.91
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	99.91
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.91
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.9
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	99.9
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	99.9
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	99.89
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.89
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.89
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	99.89
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.89
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	99.88
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.88
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	99.86
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.57
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.94
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.79
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.68
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.53
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.49
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.48
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.47
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.46
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.43
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	98.41
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.36
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	98.29
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	98.28
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	98.26
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	98.19
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.17
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	98.13
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	98.13
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	98.11
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.11
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.1
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.1
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	98.07
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	98.0
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.95
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.91
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	97.89
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.88
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.81
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.8
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	97.79
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	97.77
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	97.76
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.76
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.72
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.7
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.69
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.68
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	97.62
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	97.59
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	97.59
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	97.58
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.56
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	97.56
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.53
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.46
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.43
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.34
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	97.32
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.28
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	97.28
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.26
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	97.26
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.23
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	97.18
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.16
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	97.15
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	97.09
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	97.08
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	97.05
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.03
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	97.01
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.91
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.9
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.88
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.87
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	96.85
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.83
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.8
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.79
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.79
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.76
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	96.7
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	96.68
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	96.66
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.65
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.62
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.61
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.51
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.49
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.45
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.44
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.4
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.29
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.26
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.21
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.19
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.17
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.17
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.14
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.12
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.1
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.1
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	95.9
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	95.9
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.87
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	95.87
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.87
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.84
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	95.84
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.81
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.78
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.78
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.74
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.74
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	95.7
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	95.69
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.67
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.66
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.65
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	95.61
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.61
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.57
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	95.52
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.51
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	95.51
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	95.49
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.46
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.46
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	95.43
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.37
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.31
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	95.25
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	95.24
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	95.21
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.2
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.19
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	95.19
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	95.19
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	95.16
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.14
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	95.11
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	95.05
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.05
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.02
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	94.98
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.98
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	94.81
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.79
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	94.76
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	94.74
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.74
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.68
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	94.67
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.64
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.61
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	94.51
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.5
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	94.44
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.41
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	94.39
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.39
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.39
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	94.26
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	94.25
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.23
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	94.22
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.14
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.13
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	94.09
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.06
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.05
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	94.0
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.0
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.87
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	93.82
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.81
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.8
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.75
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	93.71
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	93.65
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	93.64
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.61
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	93.59
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	93.56
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	93.46
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.33
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.3
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	93.25
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.23
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	93.22
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	93.21
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	93.19
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	93.19
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.15
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.12
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.11
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	93.11
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.05
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.01
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	92.98
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	92.87
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	92.8
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	92.75
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	92.73
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	92.67
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	92.4
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.27
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	92.13
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	91.78
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	91.77
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	91.76
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	91.75
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	91.74
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	91.73
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	91.69
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	91.66
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.62
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	91.61
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	91.61
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	91.57
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	91.41
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	91.37
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	91.35
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	91.32
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	91.27
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	91.22
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	90.97
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	90.96
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	90.83
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	90.82
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	90.67
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	90.64
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.51
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	90.46
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	90.35
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	90.34
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	90.26
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	90.22
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.15
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.01
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	89.96
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	89.82
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	89.67
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	89.64
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	89.49
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	89.33
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	89.22
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	89.19
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	89.08
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	88.98
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.96
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	88.71
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	88.62
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	88.6
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.09
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	87.98
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	87.95
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	87.85
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	87.7
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	87.57
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	87.43
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	86.73
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	86.65
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	86.53
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	86.49
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	86.28
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	86.19
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	85.99
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	85.61
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	85.48
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	85.35
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	85.29
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	85.16
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	84.96
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	83.94
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	83.6
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	83.37
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	83.1
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	82.7
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	81.82
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	81.6
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	81.48
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	81.42
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	81.36
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	81.28
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	81.25
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	80.34
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	80.28
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	80.25
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	80.22
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	80.08

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.8e-37  Score=252.58  Aligned_cols=143  Identities=69%  Similarity=1.112  Sum_probs=133.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRK  109 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~~  109 (300)
                      ||+||||+|+||+++|+.|+.+++++||+|+|+++.+++++|++|.........+..+.+.+++++|||+||+++|.|++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~~   81 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRK   81 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCCC
Confidence            89999976999999999999999999999999998999999999987655555544456777899999999999999999


Q ss_pred             CCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263          110 PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (300)
Q Consensus       110 ~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG  172 (300)
                      +||+|.|++..|.+++++++++|.+++|+++++++|||+|+|++++++++++.++||++||||
T Consensus        82 ~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG  144 (144)
T d1mlda1          82 PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG  144 (144)
T ss_dssp             TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence            999999999999999999999999999999999999999999999999999999999999998

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-36  Score=248.14  Aligned_cols=143  Identities=64%  Similarity=0.983  Sum_probs=130.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHh-CCCCCEEEEEecCC-cccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~-~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      |||+||||+|+||+++++.|+. .++.+||+|+|+++ .+|+++||+|+..+.....+.+++++ ++++|||+||+++|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~-~~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCH-HHHTTCSEEEECCSC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCc-cccCCCCEEEECCCc
Confidence            7999999779999999998875 47889999999965 57999999998776666666656565 789999999999999


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG  172 (300)
                      |++||++|.|++..|.+++++++++|.+++|+++++++|||+|+|++++.+++++.+.||++|+||
T Consensus        80 ~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG  145 (145)
T d2cmda1          80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG  145 (145)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999998

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=100.00  E-value=6.6e-35  Score=238.82  Aligned_cols=139  Identities=32%  Similarity=0.503  Sum_probs=120.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCC-cEEEEecCCccccccCCCCEEEEcC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS-EVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~-~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      |.||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|+.... ..... .++++ ++++|||+||+++
T Consensus         1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~-~~~~~-~~~~daDvVVita   77 (143)
T d1llda1           1 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSID-GSDDP-EICRDADMVVITA   77 (143)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEE-EESCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceee-cCCCH-HHhhCCcEEEEec
Confidence            569999996 999999999999999999999999976  689999999985322 22222 23455 7899999999999


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      |.+++||++|+|++..|.+++++++++|++++|+++++++|||+|+|+++   +++.++ ||++||||+
T Consensus        78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~---~~~~sg-~p~~rViG~  142 (143)
T d1llda1          78 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHV---AQKLTG-LPENQIFGS  142 (143)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHH---HHHHHT-CCTTSEEEC
T ss_pred             ccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHH---HHHHHC-CChhhccCC
Confidence            99999999999999999999999999999999999999999999976554   344554 999999997

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=5.9e-34  Score=232.99  Aligned_cols=138  Identities=34%  Similarity=0.566  Sum_probs=120.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccC--CCcEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      |||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|+..  +...+.. +++|+ ++++|||+||+++
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~-~~~d~-~~~~~adiVvita   77 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIV-GGADY-SLLKGSEIIVVTA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEE-EESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccc-cCCCH-HHhccccEEEEec
Confidence            89999996 999999999999999999999999976  5899999999852  2222322 24565 7899999999999


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      |.|++||++|.|++.+|.+++++++++|.++||+++++++|||+|+|+|+   +++.++ ||++||||+
T Consensus        78 g~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~---~~k~sg-~p~~rViG~  142 (142)
T d1ojua1          78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYI---MWKESG-KPRNEVFGM  142 (142)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHH---HHHHSC-CCTTSEEEC
T ss_pred             cccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCChHHHHHH---HHHHHC-CChhcEecC
Confidence            99999999999999999999999999999999999999999999976664   345554 999999996

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=6.7e-34  Score=234.33  Aligned_cols=139  Identities=24%  Similarity=0.379  Sum_probs=121.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC--CcEEEEecCCccccccCCCCEEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      ...||+|||| |+||+++|+.|++.++++||+|+|+++  ++|+++||+|+...  ..++..  +.|+ ++++|||+||+
T Consensus         5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~--~~d~-~~l~daDvvvi   80 (148)
T d1ldna1           5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW--HGDY-DDCRDADLVVI   80 (148)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEE--ECCG-GGTTTCSEEEE
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEE--ECCH-HHhccceeEEE
Confidence            4569999996 999999999999999999999999976  58999999998642  234443  2354 78999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      ++|.+++||++|.|++.+|++++++++++|+++||+++++++|||+|+|+++   +++.+| |||+||||+
T Consensus        81 tag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~---~~k~sg-~p~~rViG~  147 (148)
T d1ldna1          81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYA---TWKFSG-LPHERVIGS  147 (148)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHH---HHHHHT-CCGGGEEEC
T ss_pred             ecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHH---HHHHHC-cChhheecC
Confidence            9999999999999999999999999999999999999999999999976665   345565 999999997

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=100.00  E-value=2.3e-33  Score=233.40  Aligned_cols=142  Identities=27%  Similarity=0.481  Sum_probs=120.9

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCCcEEEEecCCccccccCCCCEEEE
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      ..+..||+|||+ |+||+++++.|+.+++++||+|+|+++  ++|+++||+|+.............|+ ++++|||+||+
T Consensus        17 ~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~-~~~~~adiVVi   94 (160)
T d1i0za1          17 TVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDY-SVTANSKIVVV   94 (160)
T ss_dssp             CCCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSG-GGGTTCSEEEE
T ss_pred             cCCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccch-hhcccccEEEE
Confidence            334569999996 999999999999999999999999975  68999999997642111111223454 78999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG  172 (300)
                      +||.+++||++|+|++..|.+++++++++|++++|+++++++|||+|+|++++   ++.+| ||++||||
T Consensus        95 tAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv~t~~~---~k~sg-lp~~rViG  160 (160)
T d1i0za1          95 TAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVT---WKLSG-LPKHRVIG  160 (160)
T ss_dssp             CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHC-CCGGGEEE
T ss_pred             ecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHHHHHHH---HHHHC-cCcccccC
Confidence            99999999999999999999999999999999999999999999999766653   45555 99999998

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.9e-33  Score=229.62  Aligned_cols=136  Identities=32%  Similarity=0.452  Sum_probs=117.3

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC----cccHHHHhccccC-CCcEEEEecCCccccccCCCCEEEEcC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~----~~g~~~dl~~~~~-~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ||+||||+|+||+++|+.|+++++++||+|+|++.    ++|+++||+|+.. +...+...  .++ ++++|||+||++|
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~--~~~-~~~~~aDiVvita   78 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ--GGY-EDTAGSDVVVITA   78 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE--CCG-GGGTTCSEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEee--CCH-HHhhhcCEEEEec
Confidence            99999977999999999999999999999999843    4689999999643 33334333  344 7899999999999


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG  172 (300)
                      |.|++|||+|.|++..|++|+++++++|.+++|+++++++|||+|+|+++   +++.+ +||++||||
T Consensus        79 G~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvDvmt~~---~~k~s-g~~~~rViG  142 (142)
T d1o6za1          79 GIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRH---LYEAG-DRSREQVIG  142 (142)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHH---HHHHS-SSCGGGEEE
T ss_pred             ccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHHHHHHH---HHHHH-CcCcccccC
Confidence            99999999999999999999999999999999999999999999965554   34444 499999998

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.8e-33  Score=229.62  Aligned_cols=137  Identities=32%  Similarity=0.571  Sum_probs=119.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccC-CCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |||+|||| |+||+++++.|+.+++++||+|+|+++  ++|+++|++|... ........  .+ +++++|||+||+++|
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~--~~-~~~~~~adivvitag   76 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA--GD-YADLKGSDVVIVAAG   76 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE--CC-GGGGTTCSEEEECCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccC--Cc-HHHhcCCCEEEEecc
Confidence            79999996 999999999999999999999999975  5889999999753 22333332  34 478999999999999


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      .++++|++|.|++.+|.+++++++++|+++||+++++++|||+|+||+++   ++.++ ||++||||+
T Consensus        77 ~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~~t~~~---~k~sg-~p~~rViGt  140 (140)
T d1a5za1          77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFF---LKESG-MDPRKVFGS  140 (140)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHT-CCTTTEEEC
T ss_pred             cccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH---HHHHC-cCccceeCc
Confidence            99999999999999999999999999999999999999999999766543   45555 999999995

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=100.00  E-value=5.7e-33  Score=227.14  Aligned_cols=137  Identities=33%  Similarity=0.485  Sum_probs=112.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC-CcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      .||+|||| |+||+++++.|+++++++||+|+|+++  ++|+++||+|+... .....+.  .+ +++++|||+||++||
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~--~~-~~~~~~adivvitag   77 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA--GD-YSDVKDCDVIVVTAG   77 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEECCC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEee--Cc-HHHhCCCceEEEecc
Confidence            49999996 999999999999999999999999965  68999999997532 2344332  34 478999999999999


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      .++++|++|.|++.+|++++++++++|.+++|+++++++|||+|+|+++   +++.+| ||++||||+
T Consensus        78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv~t~~---~~k~sg-~p~~rViG~  141 (142)
T d1y6ja1          78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYM---IQKWSG-LPVGKVIGS  141 (142)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHH---HHHHHT-CCTTTEEEC
T ss_pred             cccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHHHHHH---HHHHHC-CCccceecC
Confidence            9999999999999999999999999999999999999999999976654   345555 999999997

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=8e-33  Score=226.85  Aligned_cols=138  Identities=35%  Similarity=0.590  Sum_probs=117.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC----cccHHHHhccccC--CCcEEEEe-cCCccccccCCCCEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHINT--RSEVAGYM-GNDQLGQALEDSDVVI  101 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~----~~g~~~dl~~~~~--~~~v~~~~-~t~d~~~a~~~aDiVI  101 (300)
                      |||+||||+|+||+++|+.|+++++++||+|+|+++    .+|+++||+|+..  ...++... +++| +++++|||+||
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d-~~~l~~aDvVV   79 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDEN-LRIIDESDVVI   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTC-GGGGTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcch-HHHhccceEEE
Confidence            799999977999999999999999999999999975    3688999999753  23334322 2345 47999999999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG  172 (300)
                      ++||.|++||++|.|++..|++|++++++.+.++||++++ ++|||+|+|+|++   ++.++ ||++||||
T Consensus        80 itAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~ii-vVtNPvD~mt~~~---~k~sg-~p~~rViG  145 (145)
T d1hyea1          80 ITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVDVMTYKA---LVDSK-FERNQVFG  145 (145)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE-ECSSSHHHHHHHH---HHHHC-CCTTSEEE
T ss_pred             EecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEE-EEcCchHHHHHHH---HHHHC-cCcccccC
Confidence            9999999999999999999999999999999999999875 5899999766653   45555 99999998

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=100.00  E-value=1.6e-33  Score=231.44  Aligned_cols=137  Identities=20%  Similarity=0.303  Sum_probs=112.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC--CcEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +||+|||| |+||+++++.|+.+++++||+|+|+++  ++|+++||+|+...  ......  +.|+ ++++|||+||++|
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~--~~d~-~~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV--INDW-AALADADVVISTL   77 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE--ESCG-GGGTTCSEEEECC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCcccee--ccCH-HHhccccEEEEec
Confidence            59999995 999999999999999999999999976  57899999998632  233333  2454 7899999999999


Q ss_pred             CCCC----CCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          105 GVPR----KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       105 g~~~----~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      |.++    +||++|+|++..|+++++++++.|+++||+++++++|||+|+||+++   ++.+| ||++||||+
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~---~k~sg-~p~~rViGt  146 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALF---QHVTG-FPAHKVIGT  146 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEEC
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHHHHHHHH---HHHhC-CCccceeCc
Confidence            9876    78899999999999999999999999999999999999999665543   45555 999999995

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=100.00  E-value=3.8e-33  Score=228.26  Aligned_cols=138  Identities=34%  Similarity=0.556  Sum_probs=119.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccC--CCcEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      |||+|||| |+||+++++.|+.+++++||+|+|+++  .+++++|++|...  ....+... ++| +++++|||+||+++
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~-~~~-~~~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG-SND-YADTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE-ESC-GGGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEe-cCC-HHHhcCCeEEEEEE
Confidence            79999996 999999999999999999999999976  4778899988752  22233221 345 47899999999999


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      |.|++||++|.|++.+|+++++++++.|.++||+++++++|||+|++++++   ++.++ ||++||||+
T Consensus        78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~~~~~~---~~~sg-~p~~rviG~  142 (142)
T d1guza1          78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA---WVRSG-LPKERVIGM  142 (142)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHH---HHHHC-SCGGGEEEE
T ss_pred             ecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHHHHHHH---HHHhC-CChHhEeeC
Confidence            999999999999999999999999999999999999999999999766653   45565 999999996

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=4.7e-33  Score=231.37  Aligned_cols=142  Identities=27%  Similarity=0.415  Sum_probs=121.2

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCCcEEEEecCCccccccCCCCEEEE
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      ..+..||+|||| |+||+++|+.|+..++++||+|+|+++  ++|+++||+|+...........+.|+ +++++||+||+
T Consensus        16 ~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~~~~~adivvi   93 (159)
T d2ldxa1          16 KLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-NVSANSKLVII   93 (159)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-GGGTTEEEEEE
T ss_pred             cCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-hhhccccEEEE
Confidence            344569999996 999999999999999999999999975  58999999998643221111113454 78999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG  172 (300)
                      +||.+++||++|.|++..|++++++++++|++++|+++++++|||+|+|+|+   +++.+| ||++||||
T Consensus        94 tag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvDv~t~~---~~k~sg-~p~~rV~G  159 (159)
T d2ldxa1          94 TAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVDILTYV---VWKISG-FPVGRVIG  159 (159)
T ss_dssp             CCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHHHHHHH---HHHHHC-SCTTTEEE
T ss_pred             ecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHHHHHHH---HHHHHC-cCcccccC
Confidence            9999999999999999999999999999999999999999999999977765   355665 99999998

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.98  E-value=6e-33  Score=227.97  Aligned_cols=139  Identities=26%  Similarity=0.457  Sum_probs=110.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCC-CcEEEEecCCccccccCCCCEEEEc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      +.|||+|||+ |+||+++|+.|+++++++||+|+|+++  ++|+++||+|+... .......  .|+ ++++|||+||++
T Consensus         4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~--~d~-~~~~~adivvit   79 (146)
T d1ez4a1           4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS--GEY-SDCKDADLVVIT   79 (146)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE--CCG-GGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEee--ccH-HHhccccEEEEe
Confidence            3579999995 999999999999999999999999976  68999999997642 2233333  355 679999999999


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      +|.+++||++|.|++..|++++++++++|.++||+++++++|||+|+|+++   +++.++ ||++||||+
T Consensus        80 ag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~---~~k~sg-~p~~rViG~  145 (146)
T d1ez4a1          80 AGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYA---TWKFSG-FPKERVIGS  145 (146)
T ss_dssp             CCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHH---HHHHHC-CCGGGEEEC
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHH---HHHHHC-cCccceecC
Confidence            999999999999999999999999999999999999999999999966554   345555 999999997

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.97  E-value=9.1e-32  Score=227.16  Aligned_cols=147  Identities=25%  Similarity=0.293  Sum_probs=124.4

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecCC----cccHHHHhccccCCCcEEEEecCCccccc
Q 022263           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQA   93 (300)
Q Consensus        23 ~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~a   93 (300)
                      +..+++.||+|+||+|+||+++++.|+++++++     +|+|+|+++    .+|.++|++|+.++. ......+++.+++
T Consensus        19 ~~~k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~-~~~~~~~~~~~~~   97 (175)
T d7mdha1          19 KSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPL-LREVSIGIDPYEV   97 (175)
T ss_dssp             --CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-EEEEEEESCHHHH
T ss_pred             hccCCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccccc-ccCccccccchhh
Confidence            334467899999988999999999999987764     899999965    368899999987653 3332234566799


Q ss_pred             cCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG  172 (300)
                      ++|+|+||+++|.|++|||+|.|++..|.+|+++++++|.++|| +++++++|||+|+||+++   +++++++|++||+|
T Consensus        98 ~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia---~k~a~~ip~~~i~~  174 (175)
T d7mdha1          98 FEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC---LKNAPDIPAKNFHA  174 (175)
T ss_dssp             TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEE
T ss_pred             ccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHH---HHHCCCCCHHHEeC
Confidence            99999999999999999999999999999999999999999997 899999999999877663   46667799999998


Q ss_pred             e
Q 022263          173 V  173 (300)
Q Consensus       173 ~  173 (300)
                      |
T Consensus       175 m  175 (175)
T d7mdha1         175 L  175 (175)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.97  E-value=6.7e-32  Score=222.54  Aligned_cols=138  Identities=32%  Similarity=0.551  Sum_probs=116.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccC--CCcEEEEecCCccccccCCCCEEEEc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      ..||+|||+ |+||+++++.|+++++ .||+|+|+++  ++|+++|++|...  ........ +.+ +++++|||+||++
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~-~~~-~~~~~~advvvit   78 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG-SNT-YDDLAGADVVIVT   78 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE-ECC-GGGGTTCSEEEEC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccccCCCcEEEe-ccc-ccccCCCcEEEEe
Confidence            469999995 9999999999999886 5999999976  6899999999753  22222221 233 4889999999999


Q ss_pred             CCCCCCCCCc-----chhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          104 AGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       104 ag~~~~~g~~-----r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      +|.+++||++     |+|++..|.+++++++++|+++||+++++++|||+|+|++++   ++.+ +||++||||+
T Consensus        79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~~t~~~---~~~s-g~p~~rViG~  149 (150)
T d1t2da1          79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL---HQHS-GVPKNKIIGL  149 (150)
T ss_dssp             CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH---HHHH-CCCGGGEEEC
T ss_pred             cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHH---HHHH-CCCchheecc
Confidence            9999999876     999999999999999999999999999999999999766543   4445 4999999997

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.97  E-value=1.7e-31  Score=218.29  Aligned_cols=136  Identities=31%  Similarity=0.573  Sum_probs=108.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccC--CCcEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +||+|||| |+||+++|+.|+++++. |++|+|+++  ++++++|++|...  +...+.. +++|+ ++++|||+||++|
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~-dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~-~~~d~-~~~~~advvvita   77 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT-GTNNY-ADTANSDVIVVTS   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEE-EESCG-GGGTTCSEEEECC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcc-eEEEEeeccccchhHHHHhhccccccCCCCEEE-ecCcH-HHhcCCCEEEEee
Confidence            59999996 99999999999998875 799999976  5889999999853  2222221 23565 6799999999999


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG  172 (300)
                      |.|++||++|.|++..|++++++++++|.++||+++++++|||+|+|+|++   ++.+| ||++||||
T Consensus        78 g~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPvDv~t~~~---~~~sg-lp~~rViG  141 (142)
T d1uxja1          78 GAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA---AEVSG-FPKERVIG  141 (142)
T ss_dssp             SCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSHHHHHHHH---HHHHC-CCGGGEEE
T ss_pred             eccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCchHHHHHHH---HHHHC-cCcccccC
Confidence            999999999999999999999999999999999999999999999877764   45555 99999998

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.97  E-value=1.3e-31  Score=221.91  Aligned_cols=140  Identities=30%  Similarity=0.610  Sum_probs=119.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccC--CCcEEEEecCCccccccCCCCEEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      +++||+|||| |+||+++|+.|++.++. ||+|+|+++  ++|+++|++|...  ....... ++++++++++|||+||+
T Consensus         6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~-el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~adiVvi   82 (154)
T d1pzga1           6 RRKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR-AEYSYEAALTGADCVIV   82 (154)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEE-EECSHHHHHTTCSEEEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCc-eEEEEEeccccchhHHHHHhhhccccCCeeEEe-ccCchhhhhcCCCeEEE
Confidence            4579999996 99999999999988874 899999976  5899999999752  1122211 24567789999999999


Q ss_pred             cCCCCCCCCC-----cchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          103 PAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       103 ~ag~~~~~g~-----~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      ++|.+++||+     +|.+++..|+++++++++.|.++||+++++++|||+|+||+++   ++.+| ||++||||+
T Consensus        83 tag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~lt~~~---~~~sg-~p~~rViG~  154 (154)
T d1pzga1          83 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM---CEASG-VPTNMICGM  154 (154)
T ss_dssp             CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEEC
T ss_pred             ecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH---HHHhC-cChhcEecC
Confidence            9999999985     8999999999999999999999999999999999999776653   45555 999999996

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=2e-31  Score=220.78  Aligned_cols=143  Identities=27%  Similarity=0.367  Sum_probs=116.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCC-----EEEEEecCCc----ccHHHHhccccCCCcEEEEecCCccccccCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIANT----PGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~-----el~L~D~~~~----~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~a   97 (300)
                      +||||+||||+|+||+++++.|+++++++     +|+|+|+++.    ++..+|+.|+..+. ...+..+++.+++++|+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   80 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL-LKDVIATDKEEIAFKDL   80 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-EEEEEEESCHHHHTTTC
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccccccc-ccccccCcccccccCCc
Confidence            68999999987999999999999877653     8999999763    34455666765442 22222344567899999


Q ss_pred             CEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCC-eEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN-AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus        98 DiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~-a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      |+||+++|.|++||++|.|++..|.+++++++++|.++||+ +++|++|||+|+||++   +++.++++|++||+||
T Consensus        81 dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v---~~k~s~g~P~~~v~~m  154 (154)
T d5mdha1          81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLT---ASKSAPSIPKENFSCL  154 (154)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHH---HHHTCTTSCGGGEEEC
T ss_pred             eEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHH---HHHHcCCCCHHHEeCC
Confidence            99999999999999999999999999999999999999985 5688899999976655   3555646999999986

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=7.1e-31  Score=217.47  Aligned_cols=143  Identities=29%  Similarity=0.460  Sum_probs=118.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCE-----EEEEecCC----cccHHHHhccccCCCcEEEEecCCccccccCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSR-----LALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALED   96 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~e-----l~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~   96 (300)
                      ++||||+||||+|+||+++++.|++++++++     +.|+|.++    .++.++|+.|+..+ ..+....+++.+++++|
T Consensus         2 ~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   80 (154)
T d1y7ta1           2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFP-LLAGLEATDDPKVAFKD   80 (154)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCT-TEEEEEEESCHHHHTTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccc-cccccccCCchhhhccc
Confidence            3689999999879999999999999988763     45565543    35678888887654 33332234455689999


Q ss_pred             CCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEE
Q 022263           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (300)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG  172 (300)
                      ||+||+++|.+++||++|+|++..|.++++++++.|.+++| +++++++|||+|+|||++   ++++++||++|||+
T Consensus        81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a---~k~asg~p~~rvia  154 (154)
T d1y7ta1          81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTA  154 (154)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEE
T ss_pred             ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHH---HHHcCCCcHHhccC
Confidence            99999999999999999999999999999999999999986 899999999999777653   56666799999985

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=6.2e-27  Score=196.38  Aligned_cols=139  Identities=19%  Similarity=0.203  Sum_probs=108.3

Q ss_pred             CceEEEEcCCCChHHHH--HHHHHhCCC--CCEEEEEecCC--cccHHHHhcccc----CCCcEEEEecCCccccccCCC
Q 022263           28 DRKVAVLGAAGGIGQPL--ALLMKLNPL--VSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDS   97 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~--a~~L~~~~~--~~el~L~D~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~~a~~~a   97 (300)
                      .|||+|||| |++|.+.  +..+.....  .+||+|+|+++  .+++++|+.|..    .....+.. .++|.+++++||
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~-~~td~~~al~ga   78 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIH-LTLDRRRALDGA   78 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEE-EESCHHHHHTTC
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceee-ecCCchhhcCCC
Confidence            479999996 9888543  344444433  26999999976  568888887642    12233333 246777999999


Q ss_pred             CEEEEcCCCCCCCCCcchhhh--------------------hhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHH
Q 022263           98 DVVIIPAGVPRKPGMTRDDLF--------------------NINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE  157 (300)
Q Consensus        98 DiVIi~ag~~~~~g~~r~dl~--------------------~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~  157 (300)
                      |+||+++|.+++++++|+|++                    .+|++++++++++|+++|||||++++|||+|.+|    +
T Consensus        79 DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv~t----~  154 (169)
T d1s6ya1          79 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVT----E  154 (169)
T ss_dssp             SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHH----H
T ss_pred             CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHHHH----H
Confidence            999999999999988888775                    5899999999999999999999999999999544    4


Q ss_pred             HHHHhCCCCCCcEEEee
Q 022263          158 VFKKAGTYNEKKLFGVT  174 (300)
Q Consensus       158 ~~~~~~~~~~~kviG~t  174 (300)
                      +.++.  +|++||+|+|
T Consensus       155 ~~~k~--~p~~kviGlC  169 (169)
T d1s6ya1         155 AVLRY--TKQEKVVGLC  169 (169)
T ss_dssp             HHHHH--CCCCCEEECC
T ss_pred             HHHHH--CCCCCEEeeC
Confidence            44443  6889999997

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=1e-26  Score=191.23  Aligned_cols=114  Identities=18%  Similarity=0.183  Sum_probs=100.1

Q ss_pred             eehhHHHHHHHHHHHcCCCCCce-EEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCc
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V-~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~  252 (300)
                      |.|||+||+++|++.+..   ++ ++||+||| |++|||+||.+++....   ++++|.++++++|++|++.   ||+|+
T Consensus         2 t~LDsaR~r~~l~~~~~~---~v~~a~ViGeH-Gds~vp~~S~~~i~g~~---~~~~i~~~v~~~g~eIi~~---kG~t~   71 (152)
T d1ojua2           2 NQLDSQRLKERLYNAGAR---NIRRAWIIGEH-GDSMFVAKSLADFDGEV---DWEAVENDVRFVAAEVIKR---KGATI   71 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCB---SCCCCCEEBCS-STTCEECGGGCCCBSCC---CHHHHHHHHHTTHHHHHHH---HSSCC
T ss_pred             CccHHHHHHHHHHccCCC---CcceeEEEecC-CCccccccccccccCcc---chhHhHHHHHHHHHHhhhh---cccee
Confidence            579999999999876544   45 89999999 68999999999876543   3678899999999999984   68999


Q ss_pred             cchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          253 LSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       253 ~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      ||||.++++++++|++|   ++.++|+| +++|+|+ +++|||+||+||+
T Consensus        72 ~gia~a~~~iv~aIl~d---~~~v~pvs~~l~geyG~~dv~lsvP~vig~  118 (152)
T d1ojua2          72 FGPAVAIYRMVKAVVED---TGEIIPTSMILQGEYGIENVAVGVPAKLGK  118 (152)
T ss_dssp             HHHHHHHHHHHHHHHTT---CCCEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             ccHHHHHHHHHHHHHhc---CCCceeeeEEeccccCCCCEEEEeEEEECC
Confidence            99999999999999997   67899998 6899994 6899999999985

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.93  E-value=2.1e-26  Score=192.02  Aligned_cols=121  Identities=26%  Similarity=0.404  Sum_probs=108.9

Q ss_pred             ehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-----CCCHHHHHHHHHHHhchhhhhhhhccCCC
Q 022263          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----NLADEDIKALTKRTQDGGTEVVEAKAGKG  249 (300)
Q Consensus       175 ~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-----~~~~~~~~~i~~~v~~~g~~i~~~~~gkg  249 (300)
                      +||++||++++|++++++|++|+++||||| |+++||+||++++.+     .++++.++++.++++++|++|++++ |||
T Consensus         3 ~LDs~R~~~~lA~~l~v~~~~V~~~ViG~H-g~s~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (163)
T d1guza2           3 VLDAARFRSFIAMELGVSMQDINACVLGGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL-KQG   80 (163)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEECS-GGGEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCC-CCCcccCHhhcccCCccccccCCHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            699999999999999999999999999999 579999999999865     2566778899999999999999875 799


Q ss_pred             CCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263          250 SATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       250 ~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                      +++|++|.++.+++++++.+   ++.++|++ +++++| .+++|||+||++|+
T Consensus        81 sa~~a~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~~g~~~~~~s~P~~lg~  130 (163)
T d1guza2          81 SAFYAPASSVVEMVESIVLD---RKRVLPCAVGLEGQYGIDKTFVGVPVKLGR  130 (163)
T ss_dssp             CCCHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             CcchhHHHHHHHHHHheecc---CCCEEEEeeeeccccCCCCcEEEEeeEEcC
Confidence            99999999999999999987   56788887 578888 57899999999985

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.93  E-value=4.9e-26  Score=190.65  Aligned_cols=128  Identities=53%  Similarity=0.809  Sum_probs=114.5

Q ss_pred             eeehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCc
Q 022263          173 VTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (300)
Q Consensus       173 ~t~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~  252 (300)
                      +|.|||+||+++||++|+++|++|+++|+|||||++++|+||++.++..++.++++++.++++++|++|++.|.+++++.
T Consensus         1 ~T~LDs~R~~~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~eii~~k~~~~~~~   80 (169)
T d1mlda2           1 VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSAT   80 (169)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhhccCCCCcHHHHHHHHHHHHHhHHHHHHhhcCcChHh
Confidence            37899999999999999999999999999999999999999999988889999999999999999999999886677888


Q ss_pred             cchHHHHHHHHHHHHccCCCCCCceeeeeeeCCCCCcCEEEEeEEecC
Q 022263          253 LSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKRAWKN  300 (300)
Q Consensus       253 ~~~A~a~~~~i~ai~~~~~~~~~v~~~s~v~~~~~~~~~~S~Pv~lg~  300 (300)
                      ++++.++++++.+++.+.++...+.++++...+..+++|||+||++|+
T Consensus        81 ~~~~~a~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~v~~s~P~~ig~  128 (169)
T d1mlda2          81 LSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGK  128 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEECCSSSSSEEEEEEEEET
T ss_pred             HHHHHHHHHHHHHhccccCCceEEEEEeeccccccCCEeEeeeEEEcC
Confidence            899999999999999887767777777765444456899999999986

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.93  E-value=5.7e-26  Score=193.42  Aligned_cols=123  Identities=23%  Similarity=0.146  Sum_probs=103.1

Q ss_pred             eehhHHHHHHHHHHHcCCCCCceEE-EEEecCCCCceeeccCcCcCCC-----CC-CHHH-HHHHHHHHhchhhhhhhhc
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKA-----NL-ADED-IKALTKRTQDGGTEVVEAK  245 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~~-~v~G~h~g~t~vp~~S~~~~~~-----~~-~~~~-~~~i~~~v~~~g~~i~~~~  245 (300)
                      |.||++||+++||+++||+|++|+. +||||| |+||||+||++++.+     .. ++.+ .+++.++++++|++|++.+
T Consensus         1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeH-Gds~vp~~S~a~v~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii~~k   79 (188)
T d7mdha2           1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNH-STTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW   79 (188)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCS-STTCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcC-CCcEeeeeeccEeeccchhhcccchhhhHHHHHHHHhhhHHHHHHhh
Confidence            6799999999999999999999975 588999 689999999999764     12 2232 4889999999999999975


Q ss_pred             cCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCC-C--CCcCEEEEeEEecC
Q 022263          246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQST-V--TELPFFASKRAWKN  300 (300)
Q Consensus       246 ~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~-~--~~~~~~S~Pv~lg~  300 (300)
                        ++++++|+|.|+++++++|+++.+. ..++|++ +++|+ |  ++++|||+||++|+
T Consensus        80 --g~s~~~s~A~A~~~~~~ai~~~~~~-~~~~s~~v~~~g~~YGi~~~v~~s~Pv~ig~  135 (188)
T d7mdha2          80 --GRSSAASTAVSIADAIKSLVTPTPE-GDWFSTGVYTTGNPYGIAEDIVFSMPCRSKG  135 (188)
T ss_dssp             --SSCCHHHHHHHHHHHHHHHHSCCCT-TCCEEEEEECTTCSSCCCSSSEEEEEEECCS
T ss_pred             --cccchhhHHHHHHHHHHHHHcCCCC-CceEEEEEEeCCCccCCCCCeEEEEeeEECC
Confidence              3566778999999999999998753 4577877 46776 7  47999999999984

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.92  E-value=8.6e-26  Score=189.32  Aligned_cols=120  Identities=20%  Similarity=0.345  Sum_probs=105.8

Q ss_pred             eehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-------------CCCHHHHHHHHHHHhchhhh
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-------------NLADEDIKALTKRTQDGGTE  240 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-------------~~~~~~~~~i~~~v~~~g~~  240 (300)
                      |.||++||+++||+++|+++++|+++||||| |++|||+||++++.+             .++...++++.++++++|++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~H-g~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~   79 (170)
T d1llda2           1 TNLDSARLRFLIAQQTGVNVKNVHAYIAGEH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYK   79 (170)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBSS-STTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEcCC-CCCcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhH
Confidence            6799999999999999999999999999999 579999999998642             23455678999999999999


Q ss_pred             hhhhccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263          241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       241 i~~~~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                      |++   +||+++|++|.++++++++|+.+   +..+++++ +++++| .+++|||+||++|+
T Consensus        80 i~~---~kg~t~~~~a~~~~~~~~~i~~~---~~~~~~~~~~~~~~~g~~~i~~s~P~~lg~  135 (170)
T d1llda2          80 IIN---GKGATNYAIGMSGVDIIEAVLHD---TNRILPVSSMLKDFHGISDICMSVPTLLNR  135 (170)
T ss_dssp             HHT---SCCSCCHHHHHHHHHHHHHHHTT---CCEEEEEEEECSSBTTBCSSEEEEEEEEET
T ss_pred             HHh---hhccchhhhHHHHHHHHHHHHcC---CCceeeeeccccCccCCCCeeEeeccEEcC
Confidence            998   57899999999999999999997   45677777 688888 57999999999985

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.92  E-value=5.5e-26  Score=189.57  Aligned_cols=121  Identities=29%  Similarity=0.398  Sum_probs=108.4

Q ss_pred             ehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-----CCCHHHHHHHHHHHhchhhhhhhhccCCC
Q 022263          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----NLADEDIKALTKRTQDGGTEVVEAKAGKG  249 (300)
Q Consensus       175 ~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-----~~~~~~~~~i~~~v~~~g~~i~~~~~gkg  249 (300)
                      .||++||++++|+++|++|++|+++||||| |+++||+||++++..     .+++..++++.++++++|++|++++ +||
T Consensus         3 ~LD~~R~~~~lA~~l~v~~~~V~~~ViG~H-g~~~v~~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (164)
T d1uxja2           3 VLDAARYRTFIAMEAGVSVKDVQAMLMGGH-GDEMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTG   80 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEECCEECS-GGGEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCC-CCceeeeeeeeecCCCchhhccchhhHHHHHHHHHHHHHHHHHHH-hcC
Confidence            599999999999999999999999999999 579999999998764     2456668999999999999999876 789


Q ss_pred             CCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263          250 SATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       250 ~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                      +++||+|.++++++++|+.+   ++.++|++ +++++| .+++|||+||++|+
T Consensus        81 s~~~a~a~a~~~i~~~i~~~---~~~~~~~~~~~~g~ygi~~~~~s~P~~ig~  130 (164)
T d1uxja2          81 SAYYAPAAATAQMVEAVLKD---KKRVMPVAAYLTGQYGLNDIYFGVPVILGA  130 (164)
T ss_dssp             CCCHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             cccchHHHHHHHHHHHHhCC---CCceeeeeeeeccccCCCCceEEECeEEeC
Confidence            99999999999999999997   45688877 588888 46899999999985

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.92  E-value=1e-25  Score=189.62  Aligned_cols=122  Identities=23%  Similarity=0.358  Sum_probs=106.2

Q ss_pred             eehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----------CCCHHHHHHHHHHHhchhhhhhh
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVE  243 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----------~~~~~~~~~i~~~v~~~g~~i~~  243 (300)
                      |.||++||+++||+++|++|++|+++||||| |+||||+||++++.+          .....++.+..+..+.+|.+++.
T Consensus         2 c~LDs~R~~~~lA~~l~v~~~~V~~~ViG~H-g~t~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   80 (174)
T d1pzga2           2 CMLDSGRFRRYVADALSVSPRDVQATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR   80 (174)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhCcCHHHcEEEEEccC-CCccccceeeeeECCEechhhccccchhhhhhhhhhheeeccceeEee
Confidence            7899999999999999999999999999999 579999999998764          23455567778888888888887


Q ss_pred             hccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263          244 AKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       244 ~~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                      .+ +||++.|++|.++++++++|+.+   ++.+++++ +.+++| .+++|||+||++|+
T Consensus        81 ~~-~~gst~~~~a~a~~~~~~~i~~~---~~~~~~~s~~~~~~yGi~~v~~s~Pv~ig~  135 (174)
T d1pzga2          81 FL-GQGSAYYAPAASAVAMATSFLND---EKRVIPCSVYCNGEYGLKDMFIGLPAVIGG  135 (174)
T ss_dssp             HH-SSSCCCHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             ee-cccchhhhhHHHHHHHHHhhccc---CCceEEeeeccccccCCCCceeeeeeEEcC
Confidence            75 78999999999999999999997   56788888 468888 35799999999985

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3.9e-25  Score=184.62  Aligned_cols=127  Identities=46%  Similarity=0.700  Sum_probs=112.6

Q ss_pred             eeehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhccCCCCCc
Q 022263          173 VTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (300)
Q Consensus       173 ~t~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~gkg~t~  252 (300)
                      +|.||++||++++|+++|++|++|+++|+||||+++++|++|++.. ..+++.+++++.++++++|.++++.+.|+++++
T Consensus         1 ~T~LDs~R~~~~iA~~l~v~~~~V~~~ViGghg~~~~~p~~s~~~~-~~~~~~~~~~l~~~v~~~g~~ii~~~~~~~~~~   79 (167)
T d2cmda2           1 VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPG-VSFTEQEVADLTKRIQNAGTEVVEAKAGGGSAT   79 (167)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGCCCCEEECSSTTTEEECGGGCTT-CCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeEEEEEEcCCCceEeeecccccC-CCCcHHHHHHHHHHHHhhhhhhhhhhccCcchH
Confidence            3789999999999999999999999999999988888887777643 457788899999999999999999887889999


Q ss_pred             cchHHHHHHHHHHHHccCCCCCCceeeeeeeCCCCCcCEEEEeEEecC
Q 022263          253 LSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKRAWKN  300 (300)
Q Consensus       253 ~~~A~a~~~~i~ai~~~~~~~~~v~~~s~v~~~~~~~~~~S~Pv~lg~  300 (300)
                      ||+|.++++++++|+.+.++...+..++++..+.++++|||+||++|+
T Consensus        80 ~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~s~P~~ig~  127 (167)
T d2cmda2          80 LSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGK  127 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEET
T ss_pred             HHHHHHHHHHHHHHhccCCCceEEEEEcccccccCCCccccccEEEeC
Confidence            999999999999999988777777666677766677899999999985

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=1.4e-25  Score=187.51  Aligned_cols=138  Identities=19%  Similarity=0.240  Sum_probs=104.8

Q ss_pred             CCceEEEEcCCCChHHHHHH--HHHhCCC--CCEEEEEecCC--cccHHHHhcccc--CCCcEEEEecCCccccccCCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLAL--LMKLNPL--VSRLALYDIAN--TPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSD   98 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~--~L~~~~~--~~el~L~D~~~--~~g~~~dl~~~~--~~~~v~~~~~t~d~~~a~~~aD   98 (300)
                      +..||+|||| |++|.+.+.  .+....-  .+||+|+|+++  +++.++++.+..  .....+... ++|++++++|||
T Consensus         2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~eal~~AD   79 (167)
T d1u8xx1           2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAA-TTDPEEAFTDVD   79 (167)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEE-ESCHHHHHSSCS
T ss_pred             CCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEe-cCChhhccCCCC
Confidence            5679999996 999977543  2322222  26999999986  355566666643  122233222 457889999999


Q ss_pred             EEEEcCCCCCCCCCcchhhhh--------------------hhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHH
Q 022263           99 VVIIPAGVPRKPGMTRDDLFN--------------------INAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (300)
Q Consensus        99 iVIi~ag~~~~~g~~r~dl~~--------------------~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~  158 (300)
                      +||+++|.++++|++|++++.                    +|+++++++++.|+++||+||++++|||+|.+|    ++
T Consensus        80 ~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvdv~t----~~  155 (167)
T d1u8xx1          80 FVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVA----EA  155 (167)
T ss_dssp             EEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHH----HH
T ss_pred             EEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHHHHH----HH
Confidence            999999999999999998865                    568999999999999999999999999999544    44


Q ss_pred             HHHhCCCCCCcEEE
Q 022263          159 FKKAGTYNEKKLFG  172 (300)
Q Consensus       159 ~~~~~~~~~~kviG  172 (300)
                      .++.  +|++|||.
T Consensus       156 ~~k~--~P~~rVI~  167 (167)
T d1u8xx1         156 TRRL--RPNSKILN  167 (167)
T ss_dssp             HHHH--STTCCEEE
T ss_pred             HHHH--CCcccccC
Confidence            4444  68999973

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.91  E-value=2e-25  Score=187.04  Aligned_cols=120  Identities=18%  Similarity=0.290  Sum_probs=107.1

Q ss_pred             eehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----------CCCHHHHHHHHHHHhchhhhhhh
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVE  243 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----------~~~~~~~~~i~~~v~~~g~~i~~  243 (300)
                      |.||++||+++||+++|++|++|+++|||+| |++|||+||++++..          .++.++++++.++++.+++++++
T Consensus         1 T~LD~~R~~~~lA~~l~v~~~~V~~~ViG~H-g~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   79 (171)
T d1ez4a2           1 TSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN   79 (171)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEESSS-SSSCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEccC-CCcccccccccccCCccceeecccccccchhhhhheeehhhhhHHHHH
Confidence            6799999999999999999999999999999 689999999998763          35667788999999999999998


Q ss_pred             hccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263          244 AKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       244 ~~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                      .   ||+++|++|.++.+++++++.+   ++.+++++ +++++| .+++|||+||+||+
T Consensus        80 ~---k~s~~~a~a~~~~~~~~~i~~~---~~~~~~~~~~~~~~~g~~~~~~S~Pv~lg~  132 (171)
T d1ez4a2          80 L---KGATFYGIGTALMRISKAILRD---ENAVLPVGAYMDGQYGLNDIYIGTPAIIGG  132 (171)
T ss_dssp             H---HSCCCHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             h---hhhHhHHHHHHHHHHHHHHhcc---CCceEEEEEeeccccCccceeeeEEEEEcC
Confidence            4   6899999999999999999997   45677766 688888 57999999999985

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=2.4e-26  Score=191.50  Aligned_cols=137  Identities=19%  Similarity=0.271  Sum_probs=102.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHh--C--CCCCEEEEEecCCc-ccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKL--N--PLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~--~--~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      |||+|||| |++|.+.++....  .  ...+||+|+|+++. .+.+.|+.|........... +++.+++++|||+||++
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~-t~~~~~~l~~aDvVVit   78 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI-SDTFEGAVVDAKYVIFQ   78 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE-CSSHHHHHTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE-ecCcccccCCCCEEEEe
Confidence            79999996 9999888764332  1  12479999999764 23456776654332233332 45667999999999999


Q ss_pred             CCCCCCCCCcchhhhhhhH--------------------HHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhC
Q 022263          104 AGVPRKPGMTRDDLFNINA--------------------GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~--------------------~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~  163 (300)
                      +|.+++++++|++++..|.                    +.+.++. ++.++||+||++++|||+|.    +|++.++. 
T Consensus        79 a~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~-~~~~~~p~a~~i~vtNPvdi----it~~~~~~-  152 (162)
T d1up7a1          79 FRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYV-DTVRKTSNATIVNFTNPSGH----ITEFVRNY-  152 (162)
T ss_dssp             CCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHH-HHHHHTTCCEEEECSSSHHH----HHHHHHHT-
T ss_pred             cccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHh-hhhccCCCeEEEEeCCHHHH----HHHHHHHh-
Confidence            9999999999988876654                    4555554 57889999999999999994    55555554 


Q ss_pred             CCCCCcEEEee
Q 022263          164 TYNEKKLFGVT  174 (300)
Q Consensus       164 ~~~~~kviG~t  174 (300)
                       +|++|++|+|
T Consensus       153 -~p~~rviGlC  162 (162)
T d1up7a1         153 -LEYEKFIGLC  162 (162)
T ss_dssp             -TCCSSEEECC
T ss_pred             -CCCCCEEeeC
Confidence             5789999997

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.91  E-value=1.4e-25  Score=187.93  Aligned_cols=120  Identities=22%  Similarity=0.332  Sum_probs=103.9

Q ss_pred             eehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC------------CCCHHHHHHHHHHHhchhhhh
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEV  241 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~------------~~~~~~~~~i~~~v~~~g~~i  241 (300)
                      |.||++||+++||+++|++|++|+++||||| |++|+|+||++++.+            .+++++++++.++++++++++
T Consensus         1 T~LDs~R~~~~la~~lgv~~~~V~~~ViG~H-g~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (169)
T d1y6ja2           1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATI   79 (169)
T ss_dssp             THHHHHHHHHHHHTTTTCCTTTEECCEEBCS-SSSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHceEEEEccC-CCCCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Confidence            6799999999999999999999999999999 579999999998653            123445689999999999999


Q ss_pred             hhhccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCCC-CcCEEEEeEEecC
Q 022263          242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVT-ELPFFASKRAWKN  300 (300)
Q Consensus       242 ~~~~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~~-~~~~~S~Pv~lg~  300 (300)
                      ++   +|++++|++|.++++++++++.+   ++.++|++ +++|+|+ +++|||+||++|+
T Consensus        80 ~~---~~~s~~~a~a~~~~~~~~~i~~~---~~~~~~~~~~~~g~yg~~~i~~s~Pv~lg~  134 (169)
T d1y6ja2          80 IK---NKGATYYGIAVSINTIVETLLKN---QNTIRTVGTVINGMYGIEDVAISLPSIVNS  134 (169)
T ss_dssp             HH---HTSCCCHHHHHHHHHHHHHHHHT---CCCEECCEEEECSBTTBCSEEEECCEEEET
T ss_pred             hh---hhhhhhhHHHHHHHHHHHHhccC---CCCceeeeeeeccccCCcccceeeeeEEcC
Confidence            98   46899999999999999999997   56788887 6899993 5899999999985

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.91  E-value=5.3e-25  Score=186.11  Aligned_cols=123  Identities=23%  Similarity=0.160  Sum_probs=102.3

Q ss_pred             eehhHHHHHHHHHHHcCCCCCceEEE-EEecCCCCceeeccCcCcCCCC-----------CCHHHHHHHHHHHhchhhhh
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVNVP-VVGGHAGITILPLFSQATPKAN-----------LADEDIKALTKRTQDGGTEV  241 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~~~-v~G~h~g~t~vp~~S~~~~~~~-----------~~~~~~~~i~~~v~~~g~~i  241 (300)
                      |.||++||++++|+++||+|++|+++ ||||| |+++||+||++++++.           .+....+++.+++++++++|
T Consensus         1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeH-G~s~vp~~S~a~v~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i   79 (179)
T d5mdha2           1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNH-SSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAV   79 (179)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCS-STTCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcC-CCcccccchhceecCcchhhhhhhccccchhhHHHHHHHHHhccHhh
Confidence            67999999999999999999999886 55999 6899999999997641           22333578999999999999


Q ss_pred             hhhccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeC-CC--CCcCEEEEeEEecC
Q 022263          242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQS-TV--TELPFFASKRAWKN  300 (300)
Q Consensus       242 ~~~~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~-~~--~~~~~~S~Pv~lg~  300 (300)
                      ++++  +++++|++|.|+++++++|+.+.++. .+++++ +.++ +|  ++++|||+||+||+
T Consensus        80 ~~~~--~~ss~~~~a~a~~~~~~~i~~~~~~~-~~~s~~v~~~g~~yGi~~~v~~s~P~~lg~  139 (179)
T d5mdha2          80 IKAR--KLSSAMSAAKAICDHVRDIWFGTPEG-EFVSMGIISDGNSYGVPDDLLYSFPVTIKD  139 (179)
T ss_dssp             HHHH--SSCCCHHHHHHHHHHHHHHHHCCCTT-CCEEEEEECTTCSSSCCSSCEEEEEEEEET
T ss_pred             hhcc--CcchHHHHHHHHHHHHHHHHhhcccC-CceeEEEEccCcccCCccceEEeeeEEEcC
Confidence            9975  47888999999999999999986643 556665 4565 46  58999999999985

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.91  E-value=3.9e-25  Score=185.37  Aligned_cols=120  Identities=18%  Similarity=0.254  Sum_probs=105.5

Q ss_pred             eehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC------------CCCHHHHHHHHHHHhchhhhh
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEV  241 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~------------~~~~~~~~~i~~~v~~~g~~i  241 (300)
                      |.||++||+++||+++|+++++|+++|||+| |++|||+||++++..            ..++++++++.+++++++.++
T Consensus         3 T~LDs~R~~~~lA~~lgv~~~~V~~~ViG~H-g~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d1i0za2           3 CNLDSARFRYLMAEKLGIHPSSCHGWILGEH-GDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCEEBCS-STTCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCcCHHHceEEEEccC-CCcccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceEEe
Confidence            6899999999999999999999999999999 579999999998653            123345688999999999999


Q ss_pred             hhhccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263          242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWKN  300 (300)
Q Consensus       242 ~~~~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg~  300 (300)
                      ++.   |++++|++|.++++++++++.+   ++.++|++ +++|+|  ++++|||+||++|+
T Consensus        82 ~~~---~~~s~~a~a~~~~~~~~~~~~~---~~~v~~~~~~~~g~YGi~~~i~~s~Pv~lg~  137 (172)
T d1i0za2          82 IKL---KGYTNWAIGLSVADLIESMLKN---LSRIHPVSTMVKGMYGIENEVFLSLPCILNA  137 (172)
T ss_dssp             HHH---HSSCCHHHHHHHHHHHHHHHTT---CCEEEEEEEECTTSTTCCSCCEEEEEEEEET
T ss_pred             eec---ccccchHHHHHHHHHHHHHhcC---CCcccccceeccCcCCCcCCEEEEEEEEecC
Confidence            984   5789999999999999999997   56799988 578888  46899999999985

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=9.7e-25  Score=183.04  Aligned_cols=120  Identities=21%  Similarity=0.298  Sum_probs=105.9

Q ss_pred             eehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-----------CCCHHHHHHHHHHHhchhhhhh
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----------NLADEDIKALTKRTQDGGTEVV  242 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-----------~~~~~~~~~i~~~v~~~g~~i~  242 (300)
                      |.||++||+++||+++|++|++|+++|||+| |++|||+||++++..           .++.++++++.++++++|++++
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~H-g~t~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (172)
T d1a5za2           2 TVLDTARLRTLIAQHCGFSPRSVHVYVIGEH-GDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEII   80 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEecC-CCCcccchhhcccCCcchhhhhhccccccHHHhhhhHHHHhccceeEe
Confidence            6799999999999999999999999999999 689999999998653           2566778899999999999999


Q ss_pred             hhccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263          243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       243 ~~~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                      +.   |+++.|++|.++++++.+++.+   .+.+.+++ +++++| .+++|||+||+||+
T Consensus        81 ~~---~~~~~~~~a~a~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~v~~s~P~~lg~  134 (172)
T d1a5za2          81 ER---KGATHYAIALAVADIVESIFFD---EKRVLTLSVYLEDYLGVKDLCISVPVTLGK  134 (172)
T ss_dssp             HH---HSCCCHHHHHHHHHHHHHHHTT---CCEEEEEEEEESSBTTBCSEEEEEEEEEET
T ss_pred             ec---cccchhhHHHHHHHHHHHHHhh---cccceeeecccccccccCCeeEeeeEEEcC
Confidence            84   5889999999999999999987   45677766 678877 46899999999985

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.90  E-value=1.7e-24  Score=180.53  Aligned_cols=119  Identities=26%  Similarity=0.308  Sum_probs=105.6

Q ss_pred             ehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----------CCCHHHHHHHHHHHhchhhhhhhh
Q 022263          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEA  244 (300)
Q Consensus       175 ~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----------~~~~~~~~~i~~~v~~~g~~i~~~  244 (300)
                      .||++|+++++|+++|++|++|+++|||+| |++|+|+||++++..          ...+++++++.++++++++++++ 
T Consensus         2 ~LD~~R~~~~la~~lgv~~~~V~~~ViG~H-g~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-   79 (165)
T d1t2da2           2 VLDTSRLKYYISQKLNVCPRDVNAHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVN-   79 (165)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHH-
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCC-CCCcccceeecccCCcchhhhcccchhhhhhhhhhhhhhhhhhHHHhh-
Confidence            589999999999999999999999999999 579999999997652          34566778899999999999998 


Q ss_pred             ccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263          245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       245 ~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                        +||+++|++|.+++.++++++.+   .+.+++++ +++++| .+++|||+||+||+
T Consensus        80 --~~~~~~~a~a~a~~~~~~~i~~~---~~~~~~~~v~~~g~yg~~~v~~s~Pv~lg~  132 (165)
T d1t2da2          80 --LHASPYVAPAAAIIEMAESYLKD---LKKVLICSTLLEGQYGHSDIFGGTPVVLGA  132 (165)
T ss_dssp             --HTSSCCHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             --hccceeechhHHHHHHHHHHhhc---cccceeeeeccccccccCCeeEeeeEEEcC
Confidence              46899999999999999999997   45688877 789998 56899999999985

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.90  E-value=5.2e-24  Score=176.20  Aligned_cols=122  Identities=22%  Similarity=0.339  Sum_probs=106.0

Q ss_pred             EEeeehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC---CCCHHHHHHHHHHHhchhhhhhhhccC
Q 022263          171 FGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA---NLADEDIKALTKRTQDGGTEVVEAKAG  247 (300)
Q Consensus       171 iG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~---~~~~~~~~~i~~~v~~~g~~i~~~~~g  247 (300)
                      || |.||++||+++||+++|+++++|+++|||+| |++++|+||++++..   .+..++++++.++++.+++++++   +
T Consensus         1 ~G-t~LD~~R~~~~lA~~l~v~~~~V~~~ViG~H-g~~~v~~~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~   75 (161)
T d1o6za2           1 FG-GRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIE---R   75 (161)
T ss_dssp             CC-HHHHHHHHHHHHHHHHTCCGGGEECCEEECS-STTEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHT---T
T ss_pred             CC-chHHHHHHHHHHHHHHCcCHHHeEEEEEeCC-CCceeeehhhhcccccccccchHHHHHHHHHhhhhHHHHHH---h
Confidence            35 8899999999999999999999999999999 579999999998764   35566788999999999999987   4


Q ss_pred             CCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263          248 KGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       248 kg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                      ++++.+++|.++++++.+++.+   ...+.+++ +++++| .+++|||+||++|+
T Consensus        76 ~~~s~~~~a~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~S~Pv~ig~  127 (161)
T d1o6za2          76 KGATEWGPARGVAHMVEAILHD---TGEVLPASVKLEGEFGHEDTAFGVPVSLGS  127 (161)
T ss_dssp             TSSCCHHHHHHHHHHHHHHHTT---CCCEEEEEEEEESGGGCEEEEEEEEEEEET
T ss_pred             hhhhhhHHHHhhHhhhHhhhhc---cccceeecccccccccccCceeeeeeEEcC
Confidence            6889999999999999999987   34566666 678777 57899999999985

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=1.2e-23  Score=176.46  Aligned_cols=137  Identities=21%  Similarity=0.200  Sum_probs=102.4

Q ss_pred             CCceEEEEcCCCChHHHHHH--HHHhC-CC-CCEEEEEecCC--cccHHHHhcccc--CCCcEEEEecCCccccccCCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLAL--LMKLN-PL-VSRLALYDIAN--TPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSD   98 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~--~L~~~-~~-~~el~L~D~~~--~~g~~~dl~~~~--~~~~v~~~~~t~d~~~a~~~aD   98 (300)
                      +.|||+|||| |++|++.+.  .|+.. .+ .+||+|+|+++  .++.++|+.|..  .....+.. +++|++++++|||
T Consensus         1 p~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~-~~td~~eaL~dad   78 (171)
T d1obba1           1 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFE-KTMNLDDVIIDAD   78 (171)
T ss_dssp             CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEE-EESCHHHHHTTCS
T ss_pred             CCcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEE-EeCChhhcccCCC
Confidence            4689999996 999988654  24433 33 25999999976  467778888754  22233332 2568889999999


Q ss_pred             EEEEcCCC------------------CCCCCCcchhh--------hhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccH
Q 022263           99 VVIIPAGV------------------PRKPGMTRDDL--------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV  152 (300)
Q Consensus        99 iVIi~ag~------------------~~~~g~~r~dl--------~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~  152 (300)
                      +||++++.                  +++++++|.|+        ..+|+++++++++.|+++||+||++++|||+|.+|
T Consensus        79 ~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TNPvdv~t  158 (171)
T d1obba1          79 FVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGT  158 (171)
T ss_dssp             EEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHH
T ss_pred             eEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECChHHHHH
Confidence            99998664                  45667777775        45799999999999999999999999999999544


Q ss_pred             HHHHHHHHHhCCCCCCcEEE
Q 022263          153 PIAAEVFKKAGTYNEKKLFG  172 (300)
Q Consensus       153 ~i~~~~~~~~~~~~~~kviG  172 (300)
                          ++.++.+   +-|++|
T Consensus       159 ----~~~~k~~---~~k~iG  171 (171)
T d1obba1         159 ----TLVTRTV---PIKAVG  171 (171)
T ss_dssp             ----HHHHHHS---CSEEEE
T ss_pred             ----HHHHHhc---CCCccC
Confidence                4444433   358887

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.89  E-value=1.1e-24  Score=182.85  Aligned_cols=120  Identities=22%  Similarity=0.321  Sum_probs=103.5

Q ss_pred             eehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-----------CCCHHHHHHHHHHHhchhhhhh
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----------NLADEDIKALTKRTQDGGTEVV  242 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-----------~~~~~~~~~i~~~v~~~g~~i~  242 (300)
                      |.||++||+++||+++|+++++|+++||||| |++|+|+||++++.+           .++.+.++++.+++++++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~H-g~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~   79 (172)
T d1llca2           1 TSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEII   79 (172)
T ss_dssp             THHHHHHHHHHHHHHSCCCTTSCEEEEEBSS-SSSCEEEEEEEESTTCCSSSSSSCSCSSSSSSSSTTTTTTGGGTTTTS
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCC-CCcceeeeeccccCCccHHHHHhhhhccchhHHHHHHHhhcchHHHHH
Confidence            6799999999999999999999999999999 579999999997653           1222335678889999999999


Q ss_pred             hhccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263          243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       243 ~~~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                      +   +||+++|++|.++++++++++.+   .+.+++++ +++|+| .+++|||+||++|+
T Consensus        80 ~---~kg~~~~a~a~~~~~~~~~~~~~---~~~~~~~~~~~~g~ygi~~~~~s~P~~lg~  133 (172)
T d1llca2          80 K---LKGATFYGIATALARISKAILND---ENAVLPLSVYMDGQYGINDLYIGTPAVINR  133 (172)
T ss_dssp             S---SSSCTTHHHHHHHHHHHHHHHHT---CCCCEECCCCCSSSSSCCSSCCBCEEEEET
T ss_pred             H---hhhhhhhhhHHHHHHHHHHHhcC---CCCccceeeeecCccCcccceEEEEEEEcC
Confidence            7   57899999999999999999997   45677776 789999 46899999999985

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.89  E-value=4.7e-24  Score=178.15  Aligned_cols=120  Identities=19%  Similarity=0.267  Sum_probs=97.1

Q ss_pred             eehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----CC---CHHHHHHHHHHHhchhhhhhhhcc
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----NL---ADEDIKALTKRTQDGGTEVVEAKA  246 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----~~---~~~~~~~i~~~v~~~g~~i~~~~~  246 (300)
                      |.||++||++++|+++|+++++|+++||||| |++|||+||++++.+    .+   ....++++.++++++++++++.  
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~H-g~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   79 (168)
T d1hyea2           3 THLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRL--   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEECS-STTEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCC-CCccccchhheeECCEecccccccchhhhhhHHHHHhhhHHHHHHh--
Confidence            6899999999999999999999999999999 579999999998653    11   1223578889999999999874  


Q ss_pred             CCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263          247 GKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWKN  300 (300)
Q Consensus       247 gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg~  300 (300)
                       |++++|++|.+++.++++++.+   .+.+++++ ++.++|  ++++|||+||++|+
T Consensus        80 -k~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~s~Pv~lg~  132 (168)
T d1hyea2          80 -KGGSEFGPAAAILNVVRCIVNN---EKRLLTLSAYVDGEFDGIRDVCIGVPVKIGR  132 (168)
T ss_dssp             ------CCHHHHHHHHHHHHHTT---CCEEEEEEEEEESSSSSCEEEEEEEEEEEET
T ss_pred             -ccCccccchhhhhHHHHhhhcc---CCCeEEEEEEEecccCCcCCEEEeeceEEcC
Confidence             6788999999999999999997   44566555 678776  57999999999985

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.89  E-value=8.4e-24  Score=175.81  Aligned_cols=118  Identities=18%  Similarity=0.204  Sum_probs=99.3

Q ss_pred             eehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----C-C--CHHHHHHHHHHHhchhhhhhhhcc
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----N-L--ADEDIKALTKRTQDGGTEVVEAKA  246 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----~-~--~~~~~~~i~~~v~~~g~~i~~~~~  246 (300)
                      |.||++||++++|+++|++|++|+++|||+| |++|||+||++++.+    . .  .+.+++++.+++++++++|++.  
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~H-g~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~--   78 (163)
T d1hyha2           2 TLLDTARMQRAVGEAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNG--   78 (163)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGCBCCEEBCT-TTTCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHH--
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCC-CCcCccceeccccCCchHHHHhccccchHHHHHHHHhhhHHHHHHH--
Confidence            5799999999999999999999999999999 579999999998763    1 1  1233689999999999999985  


Q ss_pred             CCCCCccchHHHHHHHHHHHHccCCCCCCceeeeeeeCCCCCcCEEEEeEEecC
Q 022263          247 GKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKRAWKN  300 (300)
Q Consensus       247 gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s~v~~~~~~~~~~S~Pv~lg~  300 (300)
                       ||+++|++|.++..++.++..+   ...+.+++.+.+  .+++|||+||++|+
T Consensus        79 -kg~~~~~~a~~~~~~~~~~~~~---~~~~~~~s~~~~--~~~~~~s~Pv~ig~  126 (163)
T d1hyha2          79 -KGYTSYGVATSAIRIAKAVMAD---AHAELVVSNRRD--DMGMYLSYPAIIGR  126 (163)
T ss_dssp             -HSSCCHHHHHHHHHHHHHHHTT---CCEEEEEEEECT--TTCSEEEEEEEEET
T ss_pred             -HHhHHHhHHHHhhHHHHHhcCC---ccceeeeceecC--CcceEEEeEEEEcC
Confidence             5889999999999999999997   456677764322  35789999999985

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.89  E-value=1.2e-23  Score=175.40  Aligned_cols=120  Identities=22%  Similarity=0.297  Sum_probs=102.1

Q ss_pred             eehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC----C-------CCHHHHHHHHHHHhchhhhhh
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----N-------LADEDIKALTKRTQDGGTEVV  242 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~----~-------~~~~~~~~i~~~v~~~g~~i~  242 (300)
                      |.||++||+++||+++|+++++|+++|||+| |+++||+||++++..    .       ......+++.++++.++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~H-g~~~vp~~s~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~   79 (168)
T d1ldna2           1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQII   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGEEEEEEBCS-STTCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHeEEEEEcCC-CCccccchhhcccCCcchhhhhhhhhhhhccchhhhhhhhhhhHHHHH
Confidence            6799999999999999999999999999999 579999999998653    1       112335788888888888888


Q ss_pred             hhccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC-CCcCEEEEeEEecC
Q 022263          243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKRAWKN  300 (300)
Q Consensus       243 ~~~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~-~~~~~~S~Pv~lg~  300 (300)
                      ..   |+++.|++|.++.+++++++.+   ...+.+++ +++++| ++++|||+||+||+
T Consensus        80 ~~---~~~s~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~yg~~~v~~s~Pv~lg~  133 (168)
T d1ldna2          80 EK---KGATYYGIAMGLARVTRAILHN---ENAILTVSAYLDGLYGERDVYIGVPAVINR  133 (168)
T ss_dssp             HH---HSCCCHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESTTSCEEEEEEEEEEEET
T ss_pred             Hh---hccccchHHHHHhhHHHhhhcc---cceeeeeeeeeccccCCCCeeecceEEEcC
Confidence            74   5789999999999999999987   45677776 578888 57899999999985

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=2.2e-23  Score=174.90  Aligned_cols=124  Identities=23%  Similarity=0.184  Sum_probs=101.4

Q ss_pred             eeehhHHHHHHHHHHHcCCCCCceEEE-EEecCCCCceeeccCcCcCCC----CC-CH-HHHHHHHHHHhchhhhhhhhc
Q 022263          173 VTTLDVVRAKTFYAGKANVNVAEVNVP-VVGGHAGITILPLFSQATPKA----NL-AD-EDIKALTKRTQDGGTEVVEAK  245 (300)
Q Consensus       173 ~t~Lds~R~~~~la~~l~v~~~~V~~~-v~G~h~g~t~vp~~S~~~~~~----~~-~~-~~~~~i~~~v~~~g~~i~~~~  245 (300)
                      +|.||++||+++||++++++|++|+++ ||||| |++++|+||++++.+    .+ .+ .+..+..++..+++++++..+
T Consensus         1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeH-G~s~vp~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (173)
T d1y7ta2           1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNH-SSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR   79 (173)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCS-STTCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEec-CccEEeeeeeeeEcCccHHHhcccccccchhhhhhhhhHHHHHHHh
Confidence            478999999999999999999999886 67999 679999999999764    12 22 223555666666677777653


Q ss_pred             cCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263          246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWKN  300 (300)
Q Consensus       246 ~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg~  300 (300)
                        +++++|++|.|+++++++|+.+.+ ++.++|++ +++|+|  ++++|||+||++|+
T Consensus        80 --~~~s~~~~a~a~~~~~~~~~~~~~-~~~~~~~~v~~~g~YGi~~~~~~s~Pvi~~~  134 (173)
T d1y7ta2          80 --GASSAASAANAAIEHIRDWALGTP-EGDWVSMAVPSQGEYGIPEGIVYSFPVTAKD  134 (173)
T ss_dssp             --SSCCHHHHHHHHHHHHHHHHTBCC-TTCCEEEEEECSSGGGCCTTSEEEEEEEEET
T ss_pred             --ccCchhhHHHHHHHHHHHHhcccC-CCCceeeEEEeccccCCccceeEeeeEEEeC
Confidence              678899999999999999999754 56799998 579988  68999999999874

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=99.88  E-value=9.4e-24  Score=176.30  Aligned_cols=120  Identities=22%  Similarity=0.277  Sum_probs=101.4

Q ss_pred             eehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC---------CCCHHHHHHHHHHHhchhhhhhhh
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA---------NLADEDIKALTKRTQDGGTEVVEA  244 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~---------~~~~~~~~~i~~~v~~~g~~i~~~  244 (300)
                      |.||++||+++||++|+++|++|+++||||| |++++|+||++++..         ..+.++..++.+++++++.++.. 
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~H-g~~~v~~~s~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   80 (169)
T d1ldma2           3 CNLDSARFRYLMGERLGVHSCSCHGWVIGEH-GDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIK-   80 (169)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCBCBCS-STTCCBCGGGCEETTEESHHHHSSTTTTTTTTHHHHHHHHHHHHHHH-
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCC-CccchhhhhhcccCCcchHHhhcccchhhhcceeEEEecCceEEEec-
Confidence            6899999999999999999999999999999 579999999998653         12233345677778888888876 


Q ss_pred             ccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263          245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWKN  300 (300)
Q Consensus       245 ~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg~  300 (300)
                        +++++.|++|.++++++++++.+   ++.+++++ +++++|  ++++|||+||+||+
T Consensus        81 --~~~s~~~a~a~~~~~~~~~~~~~---~~~~~~~~~~~~g~ygi~~~i~~s~Pv~lg~  134 (169)
T d1ldma2          81 --LKGYTSWAIGLSVADLAETIMKN---LCRVHPVSTMVKDFYGIKDNVFLSLPCVLND  134 (169)
T ss_dssp             --HHSSCCHHHHHHHHHHHHHHHTT---CCEEEEEEEECTTSTTCCSCCEEEEEEEEET
T ss_pred             --cccchhhHHHHHHhhhhheecCC---CCceeeeeeecccccCCcCCceEEeeEEEcC
Confidence              35789999999999999999997   56788877 578888  46899999999985

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=2.7e-23  Score=173.78  Aligned_cols=120  Identities=23%  Similarity=0.307  Sum_probs=102.3

Q ss_pred             eehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCC-C-----------CCHHHHHHHHHHHhchhhhh
Q 022263          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-----------LADEDIKALTKRTQDGGTEV  241 (300)
Q Consensus       174 t~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~-~-----------~~~~~~~~i~~~v~~~g~~i  241 (300)
                      |.||++|+++++|+++|++|++|+++|||+| +++|+|+||++++.. .           ...+..+++.+..+.++.++
T Consensus         3 T~LD~~R~~~~vA~~l~v~~~~V~~~ViG~H-s~~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d2ldxa2           3 CNLDSARFRYLIGEKLGVNPTSCHGWVLGEH-GDSSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCTTSSCCCEEECS-SSCEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCcCHHHcEEEEEcCC-CCccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhccceeeh
Confidence            6799999999999999999999999999999 569999999998653 1           11223467888999999888


Q ss_pred             hhhccCCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263          242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWKN  300 (300)
Q Consensus       242 ~~~~~gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg~  300 (300)
                      +..   |+++.|++|.++..++.+++.+   ++.+++++ +.+++|  ++++|||+||+||+
T Consensus        82 ~~~---k~~s~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~g~ygi~~~i~~s~Pv~ig~  137 (172)
T d2ldxa2          82 LDM---KGYTSWAIGLSVTDLARSILKN---LKRVHPVTTLVKGFHGIKEEVFLSIPCVLGE  137 (172)
T ss_dssp             HHH---HSSCCHHHHHHHHHHHHHHHTT---CCEEEEEEEECTTSTTCCSSCEEEEEEEEET
T ss_pred             hhc---ccchhHHHHHHHhHHHHhhcCC---CccceeeeeecccccCCcCCeEEEEEEEEcC
Confidence            874   5789999999999999999986   56788887 578888  47999999999985

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=99.86  E-value=5.9e-22  Score=165.66  Aligned_cols=121  Identities=19%  Similarity=0.125  Sum_probs=92.0

Q ss_pred             ehhHHHHHHHHHHHcCCCCCceEE-EEEecCCCCceeeccCcCcCCCC------CC-HHHHHHHHHHHhchhhhhhhhcc
Q 022263          175 TLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKAN------LA-DEDIKALTKRTQDGGTEVVEAKA  246 (300)
Q Consensus       175 ~Lds~R~~~~la~~l~v~~~~V~~-~v~G~h~g~t~vp~~S~~~~~~~------~~-~~~~~~i~~~v~~~g~~i~~~~~  246 (300)
                      .||++||+++||+++|++|++|++ +||||| |+++||+||++++...      .+ ....+++.+.+++++..+...+ 
T Consensus         2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~Geh-G~s~vp~~S~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (171)
T d1b8pa2           2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNH-SPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-   79 (171)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCS-STTCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHHCcCHHHeEEEEEEEcC-CCcEEeeeecceeecccchhhhhhhcchhhhHHHHHHHHHHHHHHHH-
Confidence            589999999999999999999986 677999 6899999999997641      11 2224677777888888888875 


Q ss_pred             CCCCCccchHHHHHHHHHHHHccCCCCCCceeee-eeeCCC--CCcCEEEEeEEecC
Q 022263          247 GKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKRAWKN  300 (300)
Q Consensus       247 gkg~t~~~~A~a~~~~i~ai~~~~~~~~~v~~~s-~v~~~~--~~~~~~S~Pv~lg~  300 (300)
                      +++++.++.++++..+..+|..+   .+.+++++ +++|+|  ++++|||+||++|+
T Consensus        80 ~~~~~~~~~~a~~~~~~~~i~~~---~~~~~~~s~~~~g~yg~~~gi~fS~Pv~ig~  133 (171)
T d1b8pa2          80 GVSSAASAANAAIDHIHDWVLGT---AGKWTTMGIPSDGSYGIPEGVIFGFPVTTEN  133 (171)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHCC---TTCCEEEEEECCSGGGCCTTCEEEEEEEEET
T ss_pred             hhhhhhhhhHHHHHHHHHHHhCC---CccceeEEEEeccccccccceEEEEEEEEeC
Confidence            55555555555555555555443   45688888 578888  68999999999985

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.8e-09  Score=90.55  Aligned_cols=119  Identities=16%  Similarity=0.260  Sum_probs=84.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccH--H-HHhcc---ccC--------------CCcEEEEe
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV--A-ADVGH---INT--------------RSEVAGYM   85 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~--~-~dl~~---~~~--------------~~~v~~~~   85 (300)
                      .||+|||| |.||+.+|..++..|+  +++|+|+++.   ++.  . ..+..   ...              ...+..  
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~--   79 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT--   79 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE--
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccc--
Confidence            49999996 9999999999999998  9999999752   111  0 00110   000              012343  


Q ss_pred             cCCccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCC
Q 022263           86 GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGT  164 (300)
Q Consensus        86 ~t~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~  164 (300)
                       ++|+.+++++||+|+.++              .+|.++.+++..++.+++| ++++  .||....-   ++++....  
T Consensus        80 -~~d~~~a~~~ad~ViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l~---i~~la~~~--  137 (192)
T d1f0ya2          80 -STDAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEHTIF--ASNTSSLQ---ITSIANAT--  137 (192)
T ss_dssp             -ESCHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTTCEE--EECCSSSC---HHHHHTTS--
T ss_pred             -cchhHhhhcccceehhhc--------------ccchhHHHHHHHHHhhhcccCcee--eccCcccc---cchhhhhc--
Confidence             457778899999999985              4789999999999999986 6654  88877642   34444432  


Q ss_pred             CCCCcEEEee
Q 022263          165 YNEKKLFGVT  174 (300)
Q Consensus       165 ~~~~kviG~t  174 (300)
                      -.|+|++|+.
T Consensus       138 ~~p~r~ig~H  147 (192)
T d1f0ya2         138 TRQDRFAGLH  147 (192)
T ss_dssp             SCGGGEEEEE
T ss_pred             cCHhHEEeec
Confidence            3578999884

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.79  E-value=4e-09  Score=87.91  Aligned_cols=120  Identities=18%  Similarity=0.191  Sum_probs=82.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---cc--HHH-Hhcc---cc-C--------CCcEEEEecCCc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG--VAA-DVGH---IN-T--------RSEVAGYMGNDQ   89 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g--~~~-dl~~---~~-~--------~~~v~~~~~t~d   89 (300)
                      -.||+|||| |.||+.+|..++..|+  +++++|+++.   ++  ... .+.+   .. .        ...+..   +++
T Consensus         4 I~~vaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~~   77 (186)
T d1wdka3           4 VKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---TLS   77 (186)
T ss_dssp             CSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---ESS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec---ccc
Confidence            358999996 9999999999999998  8999999752   11  111 0111   00 0        012433   334


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 022263           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (300)
Q Consensus        90 ~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~  168 (300)
                      + +++.+||+||.++              .+|.++.+++..+|.+++| ++++  +||.....   ++++....  -.|+
T Consensus        78 ~-~~~~~adlViEav--------------~E~l~~K~~lf~~l~~~~~~~~Ii--aSnTS~l~---i~~la~~~--~~p~  135 (186)
T d1wdka3          78 Y-GDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDAIL--ASNTSTIS---ISLLAKAL--KRPE  135 (186)
T ss_dssp             S-TTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTCEE--EECCSSSC---HHHHGGGC--SCGG
T ss_pred             c-ccccccceeeeee--------------cchHHHHHHHHHHHHhhcCCCeeE--Eecccccc---HHHHHHhc--cCch
Confidence            4 6799999999984              4688999999999999996 6654  88887653   34444433  2478


Q ss_pred             cEEEeee
Q 022263          169 KLFGVTT  175 (300)
Q Consensus       169 kviG~t~  175 (300)
                      |++|+..
T Consensus       136 r~~g~Hf  142 (186)
T d1wdka3         136 NFVGMHF  142 (186)
T ss_dssp             GEEEEEC
T ss_pred             heEeecc
Confidence            8888753

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.68  E-value=7.1e-08  Score=80.97  Aligned_cols=113  Identities=17%  Similarity=0.187  Sum_probs=71.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHH-------------HH-hccccCCCcEEEEecCCcccccc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-------------AD-VGHINTRSEVAGYMGNDQLGQAL   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~-------------~d-l~~~~~~~~v~~~~~t~d~~~a~   94 (300)
                      |||+|||+ |+||.++|..|+..|+  +|+.||+++.+-..             .+ +........+..   ++|+++++
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~--~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~---~~~~~~~i   74 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKKAV   74 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHHHH
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCC--cEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhccccccc---CCCHHHHH
Confidence            89999995 9999999999999998  99999996421110             01 111111112333   46778899


Q ss_pred             CCCCEEEEcCCCCCCCCC-cchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe-cCCCcc
Q 022263           95 EDSDVVIIPAGVPRKPGM-TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNS  150 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~-~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~-tNP~d~  150 (300)
                      ++||+++++.+.|..... .....+   ..+.+++.+.++...++.++++- |-|..+
T Consensus        75 ~~~d~i~i~VpTP~~~~~~~d~~~~---~~~~~~i~~~~~~~~~~~liii~STv~pGt  129 (202)
T d1mv8a2          75 LDSDVSFICVGTPSKKNGDLDLGYI---ETVCREIGFAIREKSERHTVVVRSTVLPGT  129 (202)
T ss_dssp             HTCSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred             hhCCEEEEecCccccccccccchhh---hhhhhhhhheeecccCCcceeeccccCCcc
Confidence            999999999998854432 211111   23444555555555566666554 556664

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.53  E-value=9.2e-08  Score=78.86  Aligned_cols=97  Identities=22%  Similarity=0.311  Sum_probs=65.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhcccc----CC---CcEEEEecCCccccccCCCCEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN----TR---SEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~----~~---~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      |||+|||| |.+|.++|..|+..+.  ++.||.+...+.....++...    ..   .... ...++|++++++++|+||
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~--~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~ad~Ii   76 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVE-IFWPEQLEKCLENAEVVL   76 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEE-EECGGGHHHHHTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEEecccHHHHHHHhhhhhhhhhcchhcccc-ccccccHHHHHhccchhh
Confidence            89999996 9999999999999887  999997643322233332211    11   1122 223678889999999999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ++..                ...++++++++..+-++..++++|
T Consensus        77 ~avp----------------s~~~~~~~~~l~~~l~~~~ii~~t  104 (180)
T d1txga2          77 LGVS----------------TDGVLPVMSRILPYLKDQYIVLIS  104 (180)
T ss_dssp             ECSC----------------GGGHHHHHHHHTTTCCSCEEEECC
T ss_pred             cccc----------------hhhhHHHHHhhccccccceecccc
Confidence            9752                123566777777776655555554

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.49  E-value=3.7e-07  Score=74.29  Aligned_cols=98  Identities=19%  Similarity=0.281  Sum_probs=64.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccc-----cCC-CcEEE--EecCCccccccCCCCEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-----NTR-SEVAG--YMGNDQLGQALEDSDVV  100 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~-----~~~-~~v~~--~~~t~d~~~a~~~aDiV  100 (300)
                      +||+|||| |.+|..+|..|++.|+  ++.+||+++.+..  ++...     ..+ .....  ...++|.+++++++|+|
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~~G~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~i   76 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIK--EIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVI   76 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEE
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEE
Confidence            59999996 9999999999999998  9999998653221  11111     011 01110  11135677899999999


Q ss_pred             EEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 022263          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (300)
Q Consensus       101 Ii~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (300)
                      |++....                ...+++++++.+- ++.+++...|.
T Consensus        77 ii~v~~~----------------~~~~~~~~i~~~l~~~~~iv~~~g~  108 (184)
T d1bg6a2          77 LIVVPAI----------------HHASIAANIASYISEGQLIILNPGA  108 (184)
T ss_dssp             EECSCGG----------------GHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred             EEEEchh----------------HHHHHHHHhhhccCCCCEEEEeCCC
Confidence            9985321                2456777777774 57766555444

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.48  E-value=7.8e-08  Score=80.13  Aligned_cols=73  Identities=12%  Similarity=0.255  Sum_probs=52.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccc--------cCCCcEEEEecCCccccccCCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--------NTRSEVAGYMGNDQLGQALEDS   97 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~--------~~~~~v~~~~~t~d~~~a~~~a   97 (300)
                      ..|.||+|||| |..|+++|..|+..+.  +|.||++++.....+.-.+.        ..+..+..   ++|+++++++|
T Consensus         5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~--~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~---t~~l~~a~~~a   78 (189)
T d1n1ea2           5 LYLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF---TSDVEKAYNGA   78 (189)
T ss_dssp             CCEEEEEEECC-SHHHHHHHHHHHTTEE--EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE---ESCHHHHHTTC
T ss_pred             ceeceEEEECC-CHHHHHHHHHHHHcCC--eEEEEEecHHHHHHHhhccccccccccccccccccc---chhhhhccCCC
Confidence            34568999996 9999999999999887  89999986532221111121        12334554   46888999999


Q ss_pred             CEEEEcC
Q 022263           98 DVVIIPA  104 (300)
Q Consensus        98 DiVIi~a  104 (300)
                      |+||++.
T Consensus        79 d~iiiav   85 (189)
T d1n1ea2          79 EIILFVI   85 (189)
T ss_dssp             SCEEECS
T ss_pred             CEEEEcC
Confidence            9999985

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.47  E-value=2.4e-07  Score=74.80  Aligned_cols=90  Identities=20%  Similarity=0.234  Sum_probs=60.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      |||+|||+ |.||+.+|..|...++  +|+.||+++... .+.+..      .+...  .++. +++++||+||++.  |
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~~------~~~~~--~~~~-~~~~~~DiIilav--p   66 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVERQ------LVDEA--GQDL-SLLQTAKIIFLCT--P   66 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTT------SCSEE--ESCG-GGGTTCSEEEECS--C
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHhh------cccee--eeec-ccccccccccccC--c
Confidence            89999995 9999999999999998  999999865321 112111      11111  1233 7899999999974  2


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (300)
                                    ...+.++.+++.++- ++.+++.+++
T Consensus        67 --------------~~~~~~vl~~l~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          67 --------------IQLILPTLEKLIPHLSPTAIVTDVAS   92 (165)
T ss_dssp             --------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------Hhhhhhhhhhhhhhcccccceeeccc
Confidence                          233556666676664 5777665543

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=2.2e-07  Score=83.11  Aligned_cols=112  Identities=18%  Similarity=0.152  Sum_probs=74.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCCcEEEEecC-C---ccccccC--CCCEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-D---QLGQALE--DSDVV  100 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t-~---d~~~a~~--~aDiV  100 (300)
                      |||.|+||+|++|++++..|+..+.  +|+++|...  .+.....+.+.... .+..+.+. .   .+.++++  ++|+|
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~d~~~l~~~~~~~~~d~V   77 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLGGK-HPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHHTS-CCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHhhcCC-CCEEEEeecCCHHHHHHHHhccCCCEE
Confidence            8999999999999999999999887  999999732  12222222221111 22222111 1   2344555  78999


Q ss_pred             EEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEE
Q 022263          101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM  143 (300)
Q Consensus       101 Ii~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv  143 (300)
                      |++|+...-+-  +...+.+..|+...+.+.+.+++++...++..
T Consensus        78 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~  122 (338)
T d1udca_          78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS  122 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             EECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEec
Confidence            99998542111  13356788899999999999999876655543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=2.6e-07  Score=73.98  Aligned_cols=101  Identities=16%  Similarity=0.142  Sum_probs=66.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~  108 (300)
                      |||+|||+ |.+|+.++..|.+.|+  ++.++|+++.....................  .+..+++.++|+||++...+ 
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~iii~vka~-   74 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYCSVNLVETDGSIFNESLT--ANDPDFLATSDLLLVTLKAW-   74 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEEEEEEECTTSCEEEEEEE--ESCHHHHHTCSEEEECSCGG-
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--ceEEEEcCHHHhhhhccccCCccccccccc--cchhhhhcccceEEEeeccc-
Confidence            89999996 9999999999999998  999999976432211111111111111111  22347789999999986322 


Q ss_pred             CCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCcc
Q 022263          109 KPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNS  150 (300)
Q Consensus       109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~  150 (300)
                                     -..+..+.+..+ .++..++.+.|=.+.
T Consensus        75 ---------------~~~~~~~~l~~~~~~~~~Iv~~qNG~~~  102 (167)
T d1ks9a2          75 ---------------QVSDAVKSLASTLPVTTPILLIHNGMGT  102 (167)
T ss_dssp             ---------------GHHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred             ---------------chHHHHHhhccccCcccEEeeccCcccH
Confidence                           134556666655 468888888897763

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.41  E-value=5.5e-07  Score=79.84  Aligned_cols=179  Identities=15%  Similarity=0.170  Sum_probs=106.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCC----CCEEEEEecCCcccHHHHhccccCCCcEEEEecC----CccccccCCCCEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPL----VSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVV  100 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~----~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aDiV  100 (300)
                      |||.|+||+|++|++++..|.+.++    .+++..+|.....+....+........+..+.+.    ........+.|+|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v   80 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence            7999999999999999999998765    3578888874322221222222222244443221    1234457899999


Q ss_pred             EEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCC----cccHHHHHHHHHHhCCCCCCcEEEee
Q 022263          101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV----NSTVPIAAEVFKKAGTYNEKKLFGVT  174 (300)
Q Consensus       101 Ii~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~----d~~~~i~~~~~~~~~~~~~~kviG~t  174 (300)
                      +++|+.+....  ....+.+..|+.....+.+.+.++...-++..-|.-+    +.. + ..   .... +.|....|.+
T Consensus        81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~-~-~~---E~~~-~~p~~~Y~~s  154 (322)
T d1r6da_          81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSG-S-WT---ESSP-LEPNSPYAAS  154 (322)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSS-C-BC---TTSC-CCCCSHHHHH
T ss_pred             EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCC-C-CC---CCCC-CCCCCHHHHH
Confidence            99987653221  2334567789999999999999887654433222100    000 0 00   1111 3344455555


Q ss_pred             ehhHHHHHHHHHHHcCCCCCceE-EEEEecCCC-Cceeecc
Q 022263          175 TLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAG-ITILPLF  213 (300)
Q Consensus       175 ~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h~g-~t~vp~~  213 (300)
                      .+....+...+++..+++...++ ..|.|.+.. +.++|.+
T Consensus       155 K~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~  195 (322)
T d1r6da_         155 KAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLF  195 (322)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHH
Confidence            55555666667788888888886 558886532 3344443

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=4.9e-07  Score=75.31  Aligned_cols=99  Identities=13%  Similarity=0.171  Sum_probs=66.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC----CccccccCCCCEEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVII  102 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aDiVIi  102 (300)
                      .|+||+|+||+|++|++++..|+.+++  +|.+++++..+..  +...    ..++.+.++    .++.++++++|+||.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~--~V~~~~R~~~~~~--~~~~----~~~~~~~gD~~d~~~l~~al~~~d~vi~   73 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRLP--SEGP----RPAHVVVGDVLQAADVDKTVAGQDAVIV   73 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGSC--SSSC----CCSEEEESCTTSHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEEcChhhcc--cccc----cccccccccccchhhHHHHhcCCCEEEE
Confidence            477999999999999999999999887  9999987543211  0111    112222221    345678999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCC
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN  138 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~  138 (300)
                      ++|.......     ...+....+.+++.+++.+-+
T Consensus        74 ~~g~~~~~~~-----~~~~~~~~~~l~~aa~~~~v~  104 (205)
T d1hdoa_          74 LLGTRNDLSP-----TTVMSEGARNIVAAMKAHGVD  104 (205)
T ss_dssp             CCCCTTCCSC-----CCHHHHHHHHHHHHHHHHTCC
T ss_pred             EeccCCchhh-----hhhhHHHHHHHHHHHHhcCCC
Confidence            9886422111     123456677788888887644

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=98.29  E-value=5.2e-07  Score=79.54  Aligned_cols=114  Identities=19%  Similarity=0.241  Sum_probs=73.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC----CccccccCCC--CEEEEc
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDS--DVVIIP  103 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~a--DiVIi~  103 (300)
                      ||.|+||+|++|++++..|+++++  +|+.+|.-...+....+........++.+.++    .++.++++++  |+||++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~--~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~   79 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL   79 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEee
Confidence            899999999999999999999888  89999853222211111111111133333221    1344556554  999999


Q ss_pred             CCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          104 AGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       104 ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      |+......  .+-.+....|+...+.+.+...+.+..-.++..|
T Consensus        80 aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS  123 (338)
T d1orra_          80 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  123 (338)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            87643221  1234567789999999999999988766655554

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=7.5e-07  Score=75.64  Aligned_cols=112  Identities=18%  Similarity=0.172  Sum_probs=72.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      .+||.|+||+|++|++++..|++.+.+.+|.++++++............  ..+..+....++.++++++|+|++++|..
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~--~~~~D~~~~~~~~~~~~~~d~vi~~~~~~   91 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVN--QEVVDFEKLDDYASAFQGHDVGFCCLGTT   91 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCE--EEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceee--eeeeccccccccccccccccccccccccc
Confidence            3589999999999999999998888777899999865211100011100  00000111235678899999999998754


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEE
Q 022263          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN  142 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~vi  142 (300)
                      . ......++...|.....++++...+...+-++.
T Consensus        92 ~-~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~  125 (232)
T d2bkaa1          92 R-GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNL  125 (232)
T ss_dssp             H-HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEE
T ss_pred             c-cccchhhhhhhcccccceeeecccccCcccccc
Confidence            1 122344556678888888998887766554443

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=3.1e-06  Score=74.77  Aligned_cols=163  Identities=12%  Similarity=0.088  Sum_probs=99.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC-cccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      .||.|+||+|++|++++..|.+.+.  +|+.+|... ....  .+.+......+.... .+..+.++.++|+||++|+..
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~--~~~~~~~~~~~d~~~-~~~~~~~~~~~d~VihlAa~~   76 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRKR--NVEHWIGHENFELIN-HDVVEPLYIEVDQIYHLASPA   76 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCGG--GTGGGTTCTTEEEEE-CCTTSCCCCCCSEEEECCSCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCCcCCHH--HHHHhcCCCceEEEe-hHHHHHHHcCCCEEEECcccC
Confidence            4899999999999999999999887  899998632 1111  122221112333322 223456678999999999754


Q ss_pred             CCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC----------CCcccHHHHHHHHHHhCCCCCCcEEEeee
Q 022263          108 RKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN----------PVNSTVPIAAEVFKKAGTYNEKKLFGVTT  175 (300)
Q Consensus       108 ~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN----------P~d~~~~i~~~~~~~~~~~~~~kviG~t~  175 (300)
                      ..+  ..+..+.+..|+.....+.+.+++...  .+|.+|-          |.+.-      .......+.|....|.+.
T Consensus        77 ~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~--k~I~~SS~~vy~~~~~~~~~e~------~~~~~~~~~p~~~Y~~sK  148 (312)
T d2b69a1          77 SPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQSED------YWGHVNPIGPRACYDEGK  148 (312)
T ss_dssp             SHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBCTT------CCCBCCSSSTTHHHHHHH
T ss_pred             CchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEEChheecCCCCCCCCcc------ccCCCCCCCCccHHHHHH
Confidence            211  123445678899999999999988764  4444421          11100      000000022444555555


Q ss_pred             hhHHHHHHHHHHHcCCCCCceEEE-EEecC
Q 022263          176 LDVVRAKTFYAGKANVNVAEVNVP-VVGGH  204 (300)
Q Consensus       176 Lds~R~~~~la~~l~v~~~~V~~~-v~G~h  204 (300)
                      +....+....++..+++...++.. |+|.+
T Consensus       149 ~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~  178 (312)
T d2b69a1         149 RVAETMCYAYMKQEGVEVRVARIFNTFGPR  178 (312)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHHhCCcEEEEEeeeEECCC
Confidence            555556666677778887777644 88865

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.19  E-value=1.6e-06  Score=77.79  Aligned_cols=170  Identities=14%  Similarity=0.018  Sum_probs=97.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec--CCccccccCCCCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG--NDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--t~d~~~a~~~aDiVIi~a  104 (300)
                      +.|||.|+||+|++|++++..|.++++  +|+.+|..+......++...    .......  ..++.+++++.|.||++|
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~----~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMTEDMFCD----EFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSCGGGTCS----EEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhcccC----cEEEeechhHHHHHHHhhcCCeEeecc
Confidence            568999999999999999999999998  99999985432211111111    1111100  123345678999999998


Q ss_pred             CCCCCC---CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHH----H---HHHHhCCCCCCcEEEee
Q 022263          105 GVPRKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA----E---VFKKAGTYNEKKLFGVT  174 (300)
Q Consensus       105 g~~~~~---g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~----~---~~~~~~~~~~~kviG~t  174 (300)
                      +.....   ...-......|......+.+...+.+..- +|..|.-... ...-.    +   .........|....|.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~-~i~~SS~~~~-~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~s  165 (363)
T d2c5aa1          88 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKR-FFYASSACIY-PEFKQLETTNVSLKESDAWPAEPQDAFGLE  165 (363)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSE-EEEEEEGGGS-CGGGSSSSSSCEECGGGGSSBCCSSHHHHH
T ss_pred             cccccccccccccccccccccchhhHHHHhHHhhCccc-cccccccccc-cccccccccccccccccCCcCCCCCHHHHH
Confidence            754221   12233455678888888999888876543 3333321110 00000    0   00000012234455555


Q ss_pred             ehhHHHHHHHHHHHcCCCCCceEE-EEEecC
Q 022263          175 TLDVVRAKTFYAGKANVNVAEVNV-PVVGGH  204 (300)
Q Consensus       175 ~Lds~R~~~~la~~l~v~~~~V~~-~v~G~h  204 (300)
                      .+...++-....+..|++..-++. .|.|.+
T Consensus       166 K~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~  196 (363)
T d2c5aa1         166 KLATEELCKHYNKDFGIECRIGRFHNIYGPF  196 (363)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeeeEeccC
Confidence            555556666666777887666663 488876

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.17  E-value=1.7e-06  Score=69.53  Aligned_cols=64  Identities=23%  Similarity=0.237  Sum_probs=48.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      |||+|||. |.||+.+|..|+..++  +|..||+++.+.  .++....    ...   ..+.+++++++|+||++.
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~--~V~~~d~~~~~~--~~~~~~~----~~~---~~~~~e~~~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPEAI--ADVIAAG----AET---ASTAKAIAEQCDVIITML   64 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCC--eEEEEeCCcchh--HHHHHhh----hhh---cccHHHHHhCCCeEEEEc
Confidence            79999995 9999999999999998  999999865322  2333321    111   235678899999999985

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=1.9e-06  Score=77.70  Aligned_cols=168  Identities=11%  Similarity=0.022  Sum_probs=95.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cHHHHhccc--cCCCcEEEEecC----CccccccCCC--C
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHI--NTRSEVAGYMGN----DQLGQALEDS--D   98 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~~dl~~~--~~~~~v~~~~~t----~d~~~a~~~a--D   98 (300)
                      ++.|+||+|++|++++..|++.+.  +|+.+|+....   .....+.+.  .....++.+.+.    .++++.+++.  |
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence            445999999999999999999987  99999974311   111111111  111234433211    1233455544  9


Q ss_pred             EEEEcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCC--CeEEEEec------CCCcccHHHHHHHHHHhCCCCCC
Q 022263           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCP--NAIVNMIS------NPVNSTVPIAAEVFKKAGTYNEK  168 (300)
Q Consensus        99 iVIi~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p--~a~viv~t------NP~d~~~~i~~~~~~~~~~~~~~  168 (300)
                      +|+++|+....+  ..+....+..|+.....+.+.+++++-  ...+|.+|      +|-+.   .+.    +...+.|.
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~---~~~----E~~~~~P~  153 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEI---PQK----ETTPFYPR  153 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSS---SBC----TTSCCCCC
T ss_pred             EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCC---CcC----CCCCCCCC
Confidence            999999875322  233345667899999999999988763  34555544      22221   011    11113345


Q ss_pred             cEEEeeehhHHHHHHHHHHHcCCCCCceEE-EEEecCCC
Q 022263          169 KLFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAG  206 (300)
Q Consensus       169 kviG~t~Lds~R~~~~la~~l~v~~~~V~~-~v~G~h~g  206 (300)
                      ...|.+.+....+-...++..+++..-++. .|.|...+
T Consensus       154 ~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~  192 (357)
T d1db3a_         154 SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRG  192 (357)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSC
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCC
Confidence            555666555556666667777877666653 37786533

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.13  E-value=2e-05  Score=63.21  Aligned_cols=96  Identities=16%  Similarity=0.208  Sum_probs=60.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc-ccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      |.||+|||+ |.+|.++|..|...++..+|+.||.++. ...+.+...      +.... +........++|+||++.- 
T Consensus         1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~------~~~~~-~~~~~~~~~~~dlIila~p-   71 (171)
T d2g5ca2           1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI------IDEGT-TSIAKVEDFSPDFVMLSSP-   71 (171)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS------CSEEE-SCGGGGGGTCCSEEEECSC-
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc------chhhh-hhhhhhhccccccccccCC-
Confidence            457999995 9999999999999887668999998653 122222211      11111 2222344578999999842 


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCC
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNP  147 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP  147 (300)
                                     ...+.++.+.+..+ .++.+++-+++.
T Consensus        72 ---------------~~~~~~vl~~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          72 ---------------VRTFREIAKKLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             ---------------HHHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             ---------------chhhhhhhhhhhccccccccccccccc
Confidence                           22345555566655 467777766543

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=2.5e-06  Score=75.87  Aligned_cols=105  Identities=15%  Similarity=0.126  Sum_probs=69.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-C---c-cccccCCCCEEEEc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---Q-LGQALEDSDVVIIP  103 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d-~~~a~~~aDiVIi~  103 (300)
                      |||.|+||+|++|++++..|+..+.. +|+.+|.......  .+.+.   ..++.+.+. +   + .+.+++++|+||++
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~-~V~~ld~~~~~~~--~~~~~---~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~   74 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDAIS--RFLNH---PHFHFVEGDISIHSEWIEYHVKKCDVVLPL   74 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGGGG--GGTTC---TTEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCcchh--hhccC---CCeEEEECccCChHHHHHHHHhCCCccccc
Confidence            79999999999999999988877743 7999998542111  11111   133333221 1   1 22367899999999


Q ss_pred             CCCCCCCCC--cchhhhhhhHHHHHHHHHHHHhhCCCe
Q 022263          104 AGVPRKPGM--TRDDLFNINAGIVKDLCSAIAKYCPNA  139 (300)
Q Consensus       104 ag~~~~~g~--~r~dl~~~N~~i~~~i~~~i~~~~p~a  139 (300)
                      |+....+..  .-...+..|+.....+++.+.+....-
T Consensus        75 a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~  112 (342)
T d2blla1          75 VAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRI  112 (342)
T ss_dssp             BCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEE
T ss_pred             cccccccccccCCccccccccccccccccccccccccc
Confidence            986432221  123457789999999999998876543

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.11  E-value=1.5e-06  Score=78.53  Aligned_cols=183  Identities=15%  Similarity=0.128  Sum_probs=100.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc---cccccC--CCCEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQALE--DSDVVII  102 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~~--~aDiVIi  102 (300)
                      |||.|+||+|++|++++..|++.+. ..++++|.....+....+.+......+..+.+. .|   +++.++  +.|+||+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~-~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            7999999999999999999988876 247788864322221223332222244443221 22   223333  5899999


Q ss_pred             cCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCC--------eEEEEecCCCcccH----HHHHH------HHHHh
Q 022263          103 PAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPN--------AIVNMISNPVNSTV----PIAAE------VFKKA  162 (300)
Q Consensus       103 ~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~--------a~viv~tNP~d~~~----~i~~~------~~~~~  162 (300)
                      +|+....+.  .+-.+.+..|......+.+.+.++...        ..++.+|. ..+..    .-..+      .....
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS-~~vyg~~~~~~~~~~~~~~~~~~e~  158 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHIST-DEVYGDLPHPDEVENSVTLPLFTET  158 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEE-GGGGCCCCCGGGSCTTSCCCCBCTT
T ss_pred             CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEecc-ceeeCCCccCCccccccCCCCcccC
Confidence            987542110  122346677888888888877765321        23444422 00000    00000      00000


Q ss_pred             CCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEE-EEEecCCC-Cceeecc
Q 022263          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAG-ITILPLF  213 (300)
Q Consensus       163 ~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~-~v~G~h~g-~t~vp~~  213 (300)
                      ....|..+.|.+.+...++....++..+++...++. .|+|.++. ++.+|.+
T Consensus       159 ~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~  211 (361)
T d1kewa_         159 TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLV  211 (361)
T ss_dssp             SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHHH
Confidence            012234445666666667777777888888887764 48887643 2344543

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.10  E-value=2.9e-06  Score=68.31  Aligned_cols=65  Identities=22%  Similarity=0.314  Sum_probs=48.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      |+||++|| .|.||+.+|..|.+.++  ++..||+++.+..  ++....   ...    ..+..++++++|+|+++.
T Consensus         1 M~kIg~IG-lG~MG~~iA~~L~~~g~--~v~~~d~~~~~~~--~~~~~~---~~~----~~~~~e~~~~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIG-LGHMGAPMATNLLKAGY--LLNVFDLVQSAVD--GLVAAG---ASA----ARSARDAVQGADVVISML   65 (162)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHTTC--EEEEECSSHHHHH--HHHHTT---CEE----CSSHHHHHTSCSEEEECC
T ss_pred             CCEEEEEE-EHHHHHHHHHHHHHCCC--eEEEEECchhhhh--hhhhhh---ccc----cchhhhhccccCeeeecc
Confidence            67999999 59999999999999998  9999998653322  333322   111    235678899999999985

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.10  E-value=4.1e-06  Score=74.76  Aligned_cols=177  Identities=17%  Similarity=0.147  Sum_probs=98.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC----CccccccCCCCEEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVII  102 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aDiVIi  102 (300)
                      +||||.|+||+|+||++++..|.+.+.--.++.+|.....+....+... ....+..+.+.    ..+.+++++.|.|++
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~-~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~   79 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI-LGDRVELVVGDIADAELVDKLAAKADAIVH   79 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGG-CSSSEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHh-hcCCeEEEEccCCCHHHHHHHHhhhhhhhh
Confidence            5899999999999999999999887763356666642211111111111 11234433221    234567899999999


Q ss_pred             cCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC-----CCcccHHHH----HHHHHHhCCCCCCcEE
Q 022263          103 PAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN-----PVNSTVPIA----AEVFKKAGTYNEKKLF  171 (300)
Q Consensus       103 ~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN-----P~d~~~~i~----~~~~~~~~~~~~~kvi  171 (300)
                      .|+......  .+..+.+..|+.....+.+...+.+..-+++.-+.     |.....+.-    .........+.|....
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y  159 (346)
T d1oc2a_          80 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPY  159 (346)
T ss_dssp             CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHH
T ss_pred             hhhcccccchhhCcccceeeehHhHHhhhhhhccccccccccccceEecccCccccccccccCcccccccCCCCCCCCHH
Confidence            987653222  12345678899999999999988875433221111     000000000    0000000012233445


Q ss_pred             EeeehhHHHHHHHHHHHcCCCCCceEEE-EEecC
Q 022263          172 GVTTLDVVRAKTFYAGKANVNVAEVNVP-VVGGH  204 (300)
Q Consensus       172 G~t~Lds~R~~~~la~~l~v~~~~V~~~-v~G~h  204 (300)
                      |.+.+...++....++..+++..-++.. |+|.+
T Consensus       160 ~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~  193 (346)
T d1oc2a_         160 SSTKAASDLIVKAWVRSFGVKATISNCSNNYGPY  193 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCC
Confidence            5565555566666667777776666543 77855

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.07  E-value=2.3e-06  Score=77.75  Aligned_cols=116  Identities=16%  Similarity=0.166  Sum_probs=73.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC---------------cccHHHHhccc--cCCCcEEEEecC-C--
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---------------TPGVAADVGHI--NTRSEVAGYMGN-D--   88 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~---------------~~g~~~dl~~~--~~~~~v~~~~~t-~--   88 (300)
                      |||.|+||+|++|++++..|++.|+  +|+.+|.-.               .......+...  .....+..+.+. .  
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~--~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~   79 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF   79 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence            7999999999999999999999998  999999310               00100000000  001123333221 1  


Q ss_pred             -ccccccC--CCCEEEEcCCCCCCCC--Cc---chhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263           89 -QLGQALE--DSDVVIIPAGVPRKPG--MT---RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        89 -d~~~a~~--~aDiVIi~ag~~~~~g--~~---r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                       .++++++  +.|+|++.|+...-+.  .+   -.+....|+.....+.+.+.+++.+..++..|.
T Consensus        80 ~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss  145 (393)
T d1i24a_          80 EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGT  145 (393)
T ss_dssp             HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             HHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccc
Confidence             2334455  3599999997642111  11   234567899999999999999998877766653

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=1.1e-05  Score=64.04  Aligned_cols=98  Identities=14%  Similarity=0.169  Sum_probs=62.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCC--CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |.||+|+||+|.||+-+...|..++.  ..+++++..++..+.........  ..+..   ..+ .++++++|++|++++
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~--~~~~~---~~~-~~~~~~~DivF~a~~   74 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTT--GTLQD---AFD-LEALKALDIIVTCQG   74 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCC--CBCEE---TTC-HHHHHTCSEEEECSC
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCc--eeeec---ccc-hhhhhcCcEEEEecC
Confidence            56999999999999999876666542  35888887765433322222111  11111   122 256899999999863


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                                      ..+-+++++.+.+.+.++++  ++|-.+
T Consensus        75 ----------------~~~s~~~~~~~~~~g~~~~V--ID~Ss~  100 (146)
T d1t4ba1          75 ----------------GDYTNEIYPKLRESGWQGYW--IDAASS  100 (146)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCCCEE--EECSST
T ss_pred             ----------------chHHHHhhHHHHhcCCCeec--ccCCcc
Confidence                            35567778888776666554  555554

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.95  E-value=3.7e-05  Score=60.91  Aligned_cols=117  Identities=13%  Similarity=0.134  Sum_probs=75.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCC-C-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNP-L-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~-~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      |||+||||+|.+|+-+...|.... + ..++.++...+..++..++..   . ...... ..+ .+.++++|+||++.. 
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~---~-~~~~~~-~~~-~~~~~~~DvvF~alp-   73 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGK---D-AGMLHD-AFD-IESLKQLDAVITCQG-   73 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSS---C-CCBCEE-TTC-HHHHTTCSEEEECSC-
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCC---c-ceeeec-ccc-hhhhccccEEEEecC-
Confidence            799999999999999987776533 2 348888876554444222111   1 111111 123 356899999999853 


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHH
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK  182 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~  182 (300)
                                     -...+++++.+.+.+.++++  +.|-.|.             .++++-++++.-+....+.
T Consensus        74 ---------------~~~s~~~~~~l~~~g~~~~V--IDlSsdf-------------R~~~dvpl~lPEiN~~~I~  119 (147)
T d1mb4a1          74 ---------------GSYTEKVYPALRQAGWKGYW--IDAASTL-------------RMDKEAIITLDPVNLKQIL  119 (147)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCCSEE--EESSSTT-------------TTCTTEEEECHHHHHHHHH
T ss_pred             ---------------chHHHHHhHHHHHcCCceEE--EeCCccc-------------cccCCceEEeCCcCHHHHH
Confidence                           24467888888888777665  6777772             2778888888654443333

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.91  E-value=1.1e-05  Score=66.50  Aligned_cols=108  Identities=18%  Similarity=0.242  Sum_probs=64.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc------c------H-HHHhccccCCCcEEEEecCCccccccC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP------G------V-AADVGHINTRSEVAGYMGNDQLGQALE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~------g------~-~~dl~~~~~~~~v~~~~~t~d~~~a~~   95 (300)
                      |||+|||. |+||..+|..++ .++  +++.||+++.+      +      . ..++... .......   +++...+..
T Consensus         1 MkI~ViGl-G~vGl~~a~~~a-~g~--~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~-~~~~~~~---~~~~~~~~~   72 (196)
T d1dlja2           1 MKIAVAGS-GYVGLSLGVLLS-LQN--EVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS-KQLSIKA---TLDSKAAYK   72 (196)
T ss_dssp             CEEEEECC-SHHHHHHHHHHT-TTS--EEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-SCCCEEE---ESCHHHHHH
T ss_pred             CEEEEECC-ChhHHHHHHHHH-CCC--cEEEEECCHHHHHHHhhcccccchhhHHHHhhh-hhhhhhc---cchhhhhhh
Confidence            89999995 999999997775 577  99999997521      0      0 0111111 1112222   234456789


Q ss_pred             CCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec-CCCc
Q 022263           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS-NPVN  149 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t-NP~d  149 (300)
                      ++|+++++...|.....+-     .....+....+.+....+..++++-| =|..
T Consensus        73 ~~~ii~v~vpt~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~iii~Stv~pg  122 (196)
T d1dlja2          73 EAELVIIATPTNYNSRINY-----FDTQHVETVIKEVLSVNSHATLIIKSTIPIG  122 (196)
T ss_dssp             HCSEEEECCCCCEETTTTE-----ECCHHHHHHHHHHHHHCSSCEEEECSCCCTT
T ss_pred             ccccccccCCccccccCCC-----cceeEEeehhhhhhhcccceeEEeeeecCce
Confidence            9999999877654322111     12345566666666777766665543 3444

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.89  E-value=1.7e-05  Score=70.36  Aligned_cols=170  Identities=14%  Similarity=0.018  Sum_probs=103.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc-ccH----HHHhccccCCCcEEEEecC-Cc---cccccCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGV----AADVGHINTRSEVAGYMGN-DQ---LGQALEDS   97 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~-~g~----~~dl~~~~~~~~v~~~~~t-~d---~~~a~~~a   97 (300)
                      ++++|.|+||+|++|++++..|.+.|.  +|..+|.... ...    ...+........++...++ .|   ......+.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~   92 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV   92 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc
Confidence            456899999999999999999999998  9999997321 111    1111111011123332211 11   23456888


Q ss_pred             CEEEEcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCC-----cccHHHHHHHHHHhCCCCCCcE
Q 022263           98 DVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-----NSTVPIAAEVFKKAGTYNEKKL  170 (300)
Q Consensus        98 DiVIi~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-----d~~~~i~~~~~~~~~~~~~~kv  170 (300)
                      |.|++.+....-+  ..+....+..|+.....+.+.+.+.....++..-|..+     +.  + ..   .... ..|...
T Consensus        93 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~--~-~~---E~~~-~~p~~~  165 (341)
T d1sb8a_          93 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGL--P-KV---EDTI-GKPLSP  165 (341)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCS--S-BC---TTCC-CCCCSH
T ss_pred             cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCC--C-cc---CCCC-CCCCCc
Confidence            9999887643211  12334567889999999999999887665554433211     10  0 00   1111 334455


Q ss_pred             EEeeehhHHHHHHHHHHHcCCCCCceEE-EEEecCC
Q 022263          171 FGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHA  205 (300)
Q Consensus       171 iG~t~Lds~R~~~~la~~l~v~~~~V~~-~v~G~h~  205 (300)
                      .|.+.+...++....++..+++..-++. .|+|.+.
T Consensus       166 Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~  201 (341)
T d1sb8a_         166 YAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQ  201 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTC
T ss_pred             chHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCc
Confidence            5666666677777778888888777774 4888763

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.88  E-value=5e-06  Score=66.22  Aligned_cols=65  Identities=14%  Similarity=0.231  Sum_probs=47.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      |||+|||+ |++|++++..|...+.  ++.++|.+..+..  ++....   .+..   +.+.++++++||+||++.
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~~--~i~v~~r~~~~~~--~l~~~~---g~~~---~~~~~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLERSK--EIAEQL---ALPY---AMSHQDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHHHH--HHHHHH---TCCB---CSSHHHHHHTCSEEEECS
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCCC--eEEEEcChHHhHH--hhcccc---ceee---echhhhhhhccceeeeec
Confidence            89999995 9999999999988776  9999997643222  332211   1111   245678899999999986

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.81  E-value=1.1e-05  Score=63.94  Aligned_cols=65  Identities=18%  Similarity=0.168  Sum_probs=45.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      |||++||+ |++|++++..|...+. .++.++|+++.+.+  ++....   .++..   ++. ++++++|+||++.
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~-~~i~v~~r~~~~~~--~l~~~~---~~~~~---~~~-~~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGG-YRIYIANRGAEKRE--RLEKEL---GVETS---ATL-PELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCS-CEEEEECSSHHHHH--HHHHHT---CCEEE---SSC-CCCCTTSEEEECS
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC-CcEEEEeCChhHHH--Hhhhhc---ccccc---ccc-ccccccceEEEec
Confidence            79999996 9999999998776652 38999998653222  333221   23322   243 5688999999985

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.80  E-value=2.4e-05  Score=69.56  Aligned_cols=113  Identities=19%  Similarity=0.118  Sum_probs=70.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEecC-Cc---cccccC--CCCEEE
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LGQALE--DSDVVI  101 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~~--~aDiVI  101 (300)
                      .|.|+||+|++|++++..|+..++  +|+.+|....  ........... ...++.+.+. .|   ++++++  +.|+||
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~--~V~~~d~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi   79 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLT-KHHIPFYEVDLCDRKGLEKVFKEYKIDSVI   79 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHH-TSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--eEEEEECCCCcchhHHHhHHhhc-ccCCeEEEeecCCHHHHHHHHhccCCCEEE
Confidence            488999999999999999999987  8999986321  11111111111 1122222111 12   233333  789999


Q ss_pred             EcCCCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       102 i~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ++|+....+  .+........|......+.+..++.....++..-|
T Consensus        80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS  125 (347)
T d1z45a2          80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS  125 (347)
T ss_dssp             ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             EccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecc
Confidence            999865211  12334566789999999999999887666555444

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=97.79  E-value=0.00012  Score=64.87  Aligned_cols=105  Identities=11%  Similarity=-0.013  Sum_probs=67.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HHHhccccCCCc-EEEEe----cCCccccccCCCCEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGHINTRSE-VAGYM----GNDQLGQALEDSDVVII  102 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~dl~~~~~~~~-v~~~~----~t~d~~~a~~~aDiVIi  102 (300)
                      .+|.|+||+|++|++++..|++.|+  +|+...++..+.. ...+.+...... ...+.    ....+.++++++|.|+.
T Consensus        12 k~VlVTG~sGfIGs~l~~~Ll~~G~--~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~   89 (342)
T d1y1pa1          12 SLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH   89 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence            5999999999999999999999887  7776555332111 111111111111 11111    11245578999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~  136 (300)
                      .++... ...+.......|+....++.+.+.++.
T Consensus        90 ~a~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~  122 (342)
T d1y1pa1          90 IASVVS-FSNKYDEVVTPAIGGTLNALRAAAATP  122 (342)
T ss_dssp             CCCCCS-CCSCHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hccccc-ccccccccccchhhhHHHHHHhhhccc
Confidence            887542 333444556678888899999988864

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.77  E-value=4.2e-05  Score=66.75  Aligned_cols=167  Identities=14%  Similarity=0.062  Sum_probs=93.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Ccc---cccc--CCCCEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQL---GQAL--EDSDVVII  102 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d~---~~a~--~~aDiVIi  102 (300)
                      .+|.|+||+|++|++++..|++.|+  +|+.+|..........+.+......++.+.+. .|.   ++.+  ...++++.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~   78 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN   78 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccccccc
Confidence            3799999999999999999999898  99999985432111122222222234433221 121   1111  24667777


Q ss_pred             cCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC------CCcccHHHHHHHHHHhCCCCCCcEEEee
Q 022263          103 PAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN------PVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (300)
Q Consensus       103 ~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN------P~d~~~~i~~~~~~~~~~~~~~kviG~t  174 (300)
                      +++......  ....+.+..|+.....+.+.+.++.+..+++..|-      +.+.   ..    .+...+.|....|.+
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~---~~----~E~~~~~p~~~Y~~s  151 (321)
T d1rpna_          79 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAE---RQ----DENTPFYPRSPYGVA  151 (321)
T ss_dssp             CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSS---SB----CTTSCCCCCSHHHHH
T ss_pred             ccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCC---CC----CCCCCccccChhHHH
Confidence            765432111  23345677888999999999999988777665531      1110   00    011112233334444


Q ss_pred             ehhHHHHHHHHHHHcCCCCCceEEE-EEecC
Q 022263          175 TLDVVRAKTFYAGKANVNVAEVNVP-VVGGH  204 (300)
Q Consensus       175 ~Lds~R~~~~la~~l~v~~~~V~~~-v~G~h  204 (300)
                      .+...++....++..+++...++.. +.|..
T Consensus       152 K~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~  182 (321)
T d1rpna_         152 KLYGHWITVNYRESFGLHASSGILFNHESPL  182 (321)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHhhcCCcEEEEEEecccCCC
Confidence            4445555555566777765554432 56643

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.76  E-value=1.7e-05  Score=65.55  Aligned_cols=104  Identities=13%  Similarity=0.110  Sum_probs=65.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec--CCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG--NDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--t~d~~~a~~~aDiVIi~ag  105 (300)
                      ++||.|+||+|++|++++..|.+.+...+|....+++....    .      .+.....  ....+....+.|.||.++|
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~----~------~~~~~~~d~~~~~~~~~~~~d~vi~~~g   71 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH----P------RLDNPVGPLAELLPQLDGSIDTAFCCLG   71 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC----T------TEECCBSCHHHHGGGCCSCCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc----c------cccccccchhhhhhccccchheeeeeee
Confidence            56999999999999999999998887556665544321100    0      1111000  0011233456899999988


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEE
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~v  141 (300)
                      ..........++...|......+++..++....-++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i  107 (212)
T d2a35a1          72 TTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYL  107 (212)
T ss_dssp             CCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             eeccccccccccccchhhhhhhcccccccccccccc
Confidence            653333334556677888888888888776545444

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.76  E-value=5.2e-05  Score=68.24  Aligned_cols=174  Identities=16%  Similarity=0.096  Sum_probs=94.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHh-CCCCCEEEEEecC-C-------c--c-cHHHHhcccc------CCCcEEEEecC-C
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIA-N-------T--P-GVAADVGHIN------TRSEVAGYMGN-D   88 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~-~~~~~el~L~D~~-~-------~--~-g~~~dl~~~~------~~~~v~~~~~t-~   88 (300)
                      -|||.|+||+|++|++++..|++ .+.  +|+.+|.- .       .  . .....+.+..      ....+....+. .
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~--~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~   79 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR   79 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCC--EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECccc
Confidence            47999999999999999987764 676  89999951 1       0  1 1111122111      01123322211 1


Q ss_pred             c---cccc---cCCCCEEEEcCCCCCCCCC--cchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC-CCc--ccHHHHHH
Q 022263           89 Q---LGQA---LEDSDVVIIPAGVPRKPGM--TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN-PVN--STVPIAAE  157 (300)
Q Consensus        89 d---~~~a---~~~aDiVIi~ag~~~~~g~--~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN-P~d--~~~~i~~~  157 (300)
                      |   ++++   .+++|+|+++|+....+..  ........|......+.+...+.++..++...+- ...  ..-....+
T Consensus        80 d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  159 (383)
T d1gy8a_          80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTN  159 (383)
T ss_dssp             CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----C
T ss_pred             CHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccccccccccccccccccccc
Confidence            2   2222   3578999999986432111  2234567799999999999998887665544311 000  00000000


Q ss_pred             ---HHHHhCCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEE-EEEecC
Q 022263          158 ---VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGH  204 (300)
Q Consensus       158 ---~~~~~~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~-~v~G~h  204 (300)
                         ..... .+.|....|.+.+...++-....+..|++...++. .+.|..
T Consensus       160 ~~~~~e~~-~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~  209 (383)
T d1gy8a_         160 AEPIDINA-KKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAH  209 (383)
T ss_dssp             CCCBCTTS-CCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCC
T ss_pred             cccccccc-CCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccC
Confidence               00000 12234444555555556666666777777766653 366744

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.72  E-value=0.00025  Score=54.29  Aligned_cols=111  Identities=21%  Similarity=0.257  Sum_probs=66.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc---cc-cccCCCCEEEEc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LG-QALEDSDVVIIP  103 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~-~a~~~aDiVIi~  103 (300)
                      |||.|+|+ |.+|+.++..|...++  +++++|.++..-.  .+....   ....+.|. +|   ++ ..++++|.++.+
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~--~v~vid~d~~~~~--~~~~~~---~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~   72 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDICK--KASAEI---DALVINGDCTKIKTLEDAGIEDADMYIAV   72 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHHHC---SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--CcceecCChhhhh--hhhhhh---hhhhccCcccchhhhhhcChhhhhhhccc
Confidence            89999996 9999999999999887  9999999764222  222211   11111111 12   22 236899998887


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEE
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF  171 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kvi  171 (300)
                      ...         |  +.|+.    ++...++++++-++..+.||..      .+.++..|   -+.++
T Consensus        73 t~~---------d--~~N~~----~~~~~k~~~~~~iI~~~~~~~~------~~~l~~~G---~d~vi  116 (132)
T d1lssa_          73 TGK---------E--EVNLM----SSLLAKSYGINKTIARISEIEY------KDVFERLG---VDVVV  116 (132)
T ss_dssp             CSC---------H--HHHHH----HHHHHHHTTCCCEEEECSSTTH------HHHHHHTT---CSEEE
T ss_pred             CCc---------H--HHHHH----HHHHHHHcCCceEEEEecCHHH------HHHHHHCC---CCEEE
Confidence            421         1  34542    2334456777766666677664      23456554   34554

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.70  E-value=0.00022  Score=55.91  Aligned_cols=81  Identities=17%  Similarity=0.328  Sum_probs=55.7

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ...++||+|||+.|.||..++..|.+.|+  ++..+|+++...                      .++..+++|+++++.
T Consensus         6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~--~V~~~d~~~~~~----------------------~~~~~~~~~~v~~~~   61 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGLFARYLRASGY--PISILDREDWAV----------------------AESILANADVVIVSV   61 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTCGGG----------------------HHHHHTTCSEEEECS
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHHcCC--CcEecccccccc----------------------cchhhhhcccccccc
Confidence            34567999999559999999999999998  999999854211                      124567889988875


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEec
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~t  145 (300)
                      -.            ..    +.++...+..+. ++++++-++
T Consensus        62 ~~------------~~----~~~v~~~~~~~~~~~~iiiD~~   87 (152)
T d2pv7a2          62 PI------------NL----TLETIERLKPYLTENMLLADLT   87 (152)
T ss_dssp             CG------------GG----HHHHHHHHGGGCCTTSEEEECC
T ss_pred             ch------------hh----heeeeecccccccCCceEEEec
Confidence            32            11    233444455554 567776665

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.69  E-value=5.3e-05  Score=61.33  Aligned_cols=97  Identities=14%  Similarity=0.169  Sum_probs=61.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCC-CcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      .+|+|||. |.||+.+|..|...++  +++.||+++.+.+  ++...... ..........++.+++.++|+++++..  
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~--~V~v~dr~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~--   75 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSKVD--DFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVK--   75 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHHHH--HHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSC--
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHhccccccccchhhhhhhhhhhcccceEEEecC--
Confidence            37999995 9999999999999998  8999999765333  33322111 111111111345577899999999742  


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHhhC-CCeEEEEec
Q 022263          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~t  145 (300)
                                   +.+.+.++...+.... |..++|..|
T Consensus        76 -------------~~~~v~~v~~~l~~~~~~g~iiid~s  101 (176)
T d2pgda2          76 -------------AGQAVDNFIEKLVPLLDIGDIIIDGG  101 (176)
T ss_dssp             -------------TTHHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             -------------chHHHHHHHHHHHhccccCcEEEecC
Confidence                         1234455556666554 455665554

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.68  E-value=1.6e-05  Score=62.86  Aligned_cols=64  Identities=17%  Similarity=0.214  Sum_probs=46.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      |||+|||. |.+|+.++..|.++++  ++..+|..+.+.... .....   .+.     .+..++++++|+||++.
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~---~~~-----~~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIE-RARTV---GVT-----ETSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHH-HHHHH---TCE-----ECCHHHHHTSSEEEECS
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCC--eEEEEcCchhHHHHH-hhhcc---ccc-----ccHHHHHhhcCeEEEEe
Confidence            79999995 9999999999999998  899998765322211 11111   111     12457899999999985

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.62  E-value=0.00018  Score=58.84  Aligned_cols=161  Identities=15%  Similarity=0.057  Sum_probs=83.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEE-EecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      .|.+|.|+||+|++|++++..|++.+.  ++.++|..+......++....  ..+.. .....++.++++++|.||++++
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~--~v~v~~~~R~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSD--KFVAKGLVRSAQGKEKIGGEA--DVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTT--TCEEEEEESCHHHHHHTTCCT--TEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--cEEEEEEcCCHHHHHhccCCc--EEEEeeeccccccccccccceeeEEEEe
Confidence            467999999999999999999998886  444554432222222222211  01111 0001234577899999999987


Q ss_pred             CCCCCC---------------CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcE
Q 022263          106 VPRKPG---------------MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (300)
Q Consensus       106 ~~~~~g---------------~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kv  170 (300)
                      ....+.               .........|..-.+.++..............-+...+.            ...|. ..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~-~~  144 (252)
T d2q46a1          78 AVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTN------------PDHPL-NK  144 (252)
T ss_dssp             CCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTC------------TTCGG-GG
T ss_pred             eccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCC------------CCccc-cc
Confidence            532110               011222344556666777776666554443322211110            00001 00


Q ss_pred             EEe-eehhHHHHHHHHHHHcCCCCCceE-EEEEecC
Q 022263          171 FGV-TTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       171 iG~-t~Lds~R~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                      ... .......+...+.+..+++..-++ ..++|.+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~ilRp~~v~g~~  180 (252)
T d2q46a1         145 LGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKE  180 (252)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSSSCEEEEEECEEECSC
T ss_pred             ccccchhhhhhhhhhhhhcccccceeecceEEECCC
Confidence            011 122334445566677777666555 4578876

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=97.59  E-value=1.3e-05  Score=68.82  Aligned_cols=98  Identities=15%  Similarity=0.173  Sum_probs=61.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC--CCCEEEEcCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~--~aDiVIi~ag~  106 (300)
                      |||.|+||+|++|++++..|...+   +++.+|..... ...|+.+.            .++++.++  +.|+||++||.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g---~~v~~~~~~~~-~~~Dl~~~------------~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG---NLIALDVHSKE-FCGDFSNP------------KGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS---EEEEECTTCSS-SCCCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC---CEEEEECCCcc-ccCcCCCH------------HHHHHHHHHcCCCEEEEeccc
Confidence            899999999999999999888766   56666664321 11122221            12233444  45999999985


Q ss_pred             CCC--CCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Q 022263          107 PRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (300)
Q Consensus       107 ~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~  144 (300)
                      ...  ...........|......+....++.+.  .++.+
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~~~  102 (298)
T d1n2sa_          65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHY  102 (298)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEE
T ss_pred             ccccccccCccccccccccccccchhhhhcccc--ccccc
Confidence            421  1123344556788888888888776643  34444

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=1.5e-05  Score=69.74  Aligned_cols=158  Identities=13%  Similarity=0.093  Sum_probs=89.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~  108 (300)
                      +||.|+||+|++|++++..|.+.+.  ++++.|....    .|+.+..   .+.      +.- ...+.|+|+++|+...
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~--~vi~~~~~~~----~~~~~~~---~~~------~~~-~~~~~d~v~~~a~~~~   66 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLDSR---AVH------DFF-ASERIDQVYLAAAKVG   66 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTCHH---HHH------HHH-HHHCCSEEEECCCCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcC--EEEEecCchh----ccccCHH---HHH------HHH-hhcCCCEEEEcchhcc
Confidence            4999999999999999999999887  6666665321    1222111   000      000 0135788999876432


Q ss_pred             CC---CCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHH----HHHHHH-HHhCCCCCCcEEEeeehhHHH
Q 022263          109 KP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP----IAAEVF-KKAGTYNEKKLFGVTTLDVVR  180 (300)
Q Consensus       109 ~~---g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~----i~~~~~-~~~~~~~~~kviG~t~Lds~R  180 (300)
                      ..   .....+.+..|+.....+.+.+.+++-.-+| .+| ...+...    -++|-. ......+++...|.+.+...+
T Consensus        67 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i-~~S-S~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~  144 (315)
T d1e6ua_          67 GIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLL-FLG-SSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIK  144 (315)
T ss_dssp             CHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEE-EEC-CGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEE-EEC-CceEcCCCCCCCccCCccccCCCCCCCCHHHHHHHHHHH
Confidence            11   1133456778999999999999888654443 332 1110000    000000 000001122345556566666


Q ss_pred             HHHHHHHHcCCCCCceE-EEEEecC
Q 022263          181 AKTFYAGKANVNVAEVN-VPVVGGH  204 (300)
Q Consensus       181 ~~~~la~~l~v~~~~V~-~~v~G~h  204 (300)
                      +....++..|++..-++ ..|+|.+
T Consensus       145 ~~~~~~~~~gl~~~ilR~~~vyGp~  169 (315)
T d1e6ua_         145 LCESYNRQYGRDYRSVMPTNLYGPH  169 (315)
T ss_dssp             HHHHHHHHHCCEEEEEEECEEESTT
T ss_pred             HHHHHHHHhCCCEEEEeeccEECCC
Confidence            66666777788777776 5588987

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=97.58  E-value=6.1e-05  Score=66.60  Aligned_cols=112  Identities=18%  Similarity=0.172  Sum_probs=71.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEecC-Cc---cccccC--CCCEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ---LGQALE--DSDVV  100 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d---~~~a~~--~aDiV  100 (300)
                      +||.|+||+|++|++++..|+..|.  +|+.+|+...  ........   ....++...+. .|   +.++++  ..|+|
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~---~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v   83 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETAR---VADGMQSEIGDIRDQNKLLESIREFQPEIV   83 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTT---TTTTSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCccHHHHhhhh---cccCCeEEEeeccChHhhhhhhhhchhhhh
Confidence            5999999999999999999999998  8999998653  22211111   11123332211 12   223443  45889


Q ss_pred             EEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       101 Ii~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +++|+.+....  ..-.+....|+.....+.+.+.+.+....++..|
T Consensus        84 ~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s  130 (356)
T d1rkxa_          84 FHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT  130 (356)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             hhhhccccccccccCCccccccccccchhhhhhhhcccccccccccc
Confidence            99887542111  1123355678888999999999888766655443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.56  E-value=6.2e-05  Score=60.70  Aligned_cols=103  Identities=23%  Similarity=0.288  Sum_probs=70.6

Q ss_pred             chhhhhhhhhhccccccccCCCCCC---CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCC
Q 022263            2 RSSVLRSVKTLAKPAGARGYSSESV---PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR   78 (300)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~   78 (300)
                      |-+++-.-+.|.+|-.+|.-+-.-.   ++-||.|+|| |.+|..-+......|-  ++..+|.+...-+  .++.....
T Consensus         3 ~~av~~ga~~L~~~~gG~G~Llgg~~gv~pa~V~ViGa-GvaG~~A~~~A~~lGA--~V~~~D~~~~~l~--~l~~~~~~   77 (168)
T d1pjca1           3 RLSVQFGARFLERQQGGRGVLLGGVPGVKPGKVVILGG-GVVGTEAAKMAVGLGA--QVQIFDINVERLS--YLETLFGS   77 (168)
T ss_dssp             HHHHHHHHHHTSGGGTSCCCCTTCBTTBCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHHHHGG
T ss_pred             HHHHHHHHHHhhhhcCCcEEEecCCCCCCCcEEEEECC-ChHHHHHHHHHhhCCC--EEEEEeCcHHHHH--HHHHhhcc
Confidence            3466667778899988888766554   5889999996 9999988877777665  8999999653222  12221111


Q ss_pred             CcEEE-EecCCccccccCCCCEEEEcCCCCCCC
Q 022263           79 SEVAG-YMGNDQLGQALEDSDVVIIPAGVPRKP  110 (300)
Q Consensus        79 ~~v~~-~~~t~d~~~a~~~aDiVIi~ag~~~~~  110 (300)
                       .+.. +.....+++.+++||+||-++-.|.++
T Consensus        78 -~~~~~~~~~~~l~~~~~~aDivI~aalipG~~  109 (168)
T d1pjca1          78 -RVELLYSNSAEIETAVAEADLLIGAVLVPGRR  109 (168)
T ss_dssp             -GSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred             -cceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence             1222 222335678899999999998876543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=97.56  E-value=3.1e-05  Score=66.02  Aligned_cols=91  Identities=21%  Similarity=0.236  Sum_probs=58.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC--CCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~--~aDiVIi~ag  105 (300)
                      .|||.|+||+|++|++++..|...|+  +|+.+|+.+.     |+.+..            ++++.++  +.|+||.+|+
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~--~Vi~~~r~~~-----D~~d~~------------~~~~~l~~~~~d~vih~a~   61 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQDL-----DITNVL------------AVNKFFNEKKPNVVINCAA   61 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTTC-----CTTCHH------------HHHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEeechhc-----cCCCHH------------HHHHHHHHcCCCEEEeecc
Confidence            38999999999999999999999888  8999987542     232211            1123333  5699999887


Q ss_pred             CCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCC
Q 022263          106 VPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCP  137 (300)
Q Consensus       106 ~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p  137 (300)
                      ......  .........|......+.........
T Consensus        62 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~   95 (281)
T d1vl0a_          62 HTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA   95 (281)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC
T ss_pred             ccccccccccchhhcccccccccccccccccccc
Confidence            542111  12233445566666666666555443

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.53  E-value=0.00011  Score=59.31  Aligned_cols=35  Identities=26%  Similarity=0.451  Sum_probs=31.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT   65 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~   65 (300)
                      .|||+||| .|.+|+.++..|+..++  +|..||+++.
T Consensus         1 ~MkIGvIG-lG~MG~~ma~~L~~~G~--~V~~~dr~~~   35 (178)
T d1pgja2           1 SMDVGVVG-LGVMGANLALNIAEKGF--KVAVFNRTYS   35 (178)
T ss_dssp             CBSEEEEC-CSHHHHHHHHHHHHTTC--CEEEECSSHH
T ss_pred             CCEEEEEe-ehHHHHHHHHHHHHCCC--eEEEEECCHH
Confidence            38999999 59999999999999998  8999998654

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.46  E-value=0.00014  Score=59.46  Aligned_cols=99  Identities=20%  Similarity=0.272  Sum_probs=66.0

Q ss_pred             cccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC
Q 022263           16 AGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE   95 (300)
Q Consensus        16 ~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~   95 (300)
                      -|.+.+.......++|+|||. |.+|..++..+..-+.  ++..+|..+.++.        .  ..     ..++++.++
T Consensus        30 ~w~~~~~~~~l~gk~vgIiG~-G~IG~~va~~l~~~g~--~v~~~d~~~~~~~--------~--~~-----~~~l~ell~   91 (181)
T d1qp8a1          30 DYGRDVEIPLIQGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPKEGP--------W--RF-----TNSLEEALR   91 (181)
T ss_dssp             CCCCCSCCCCCTTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCCCSS--------S--CC-----BSCSHHHHT
T ss_pred             CCCCCCCCCcccCceEEEecc-ccccccceeeeecccc--ccccccccccccc--------e--ee-----eechhhhhh
Confidence            466655555566779999995 9999999999988777  8999998543211        0  00     135678999


Q ss_pred             CCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +||+|++..  |..+ +++ .++  |.       +.+....|++++|+++
T Consensus        92 ~sDiv~~~~--pl~~-~t~-~li--~~-------~~l~~mk~~ailIN~~  128 (181)
T d1qp8a1          92 EARAAVCAL--PLNK-HTR-GLV--KY-------QHLALMAEDAVFVNVG  128 (181)
T ss_dssp             TCSEEEECC--CCST-TTT-TCB--CH-------HHHTTSCTTCEEEECS
T ss_pred             ccchhhccc--cccc-ccc-ccc--cc-------ceeeeccccceEEecc
Confidence            999999975  3222 122 122  21       3344446899999886

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.43  E-value=6.2e-05  Score=59.29  Aligned_cols=72  Identities=22%  Similarity=0.288  Sum_probs=46.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ++|||+|+||+|.+|.-+...|.+.++ .-||.++..++..|+.....+    .......  .+ .+.+.++|+++++++
T Consensus         1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~----~~~~~~~--~~-~~~~~~~d~vf~a~p   73 (144)
T d2hjsa1           1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAE----SSLRVGD--VD-SFDFSSVGLAFFAAA   73 (144)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETT----EEEECEE--GG-GCCGGGCSEEEECSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeecc----ccchhcc--ch-hhhhccceEEEecCC
Confidence            469999999999999999988875432 347888876554444221111    1122111  12 256789999999864

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.34  E-value=7.3e-05  Score=60.91  Aligned_cols=73  Identities=16%  Similarity=0.210  Sum_probs=45.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHH-Hhc-cccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA-DVG-HINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~-dl~-~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      |+||+|+||+|.+|.-+...|..++.+ ||..+-.++..|+.. ++. +......+.    ..+.++..+++|+|+++..
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~-ei~~l~s~~~aG~~i~~~~p~~~~~~~~~----~~~~~~~~~~~dvvf~a~p   75 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENSILS----EFDPEKVSKNCDVLFTALP   75 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCCBCB----CCCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCc-eEEEeeccccCCCcccccCchhhcccccc----ccCHhHhccccceEEEccc
Confidence            789999999999999999999888765 555553444334322 221 111111121    1244455578999998853

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=97.32  E-value=0.00023  Score=60.89  Aligned_cols=77  Identities=16%  Similarity=0.065  Sum_probs=49.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc---HHHHhccccCCCcEEEEec----CCccccccCCCCE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGYMG----NDQLGQALEDSDV   99 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g---~~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aDi   99 (300)
                      +++||.|+||+|++|++++..|...|+  +|+.++++....   ....+.... ...+....+    ..+..+++++++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~-~~~v~~v~~d~~d~~~~~~~~~~~~~   78 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFK-QLGAKLIEASLDDHQRLVDALKQVDV   78 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHH-TTTCEEECCCSSCHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCcccchhHHHHHhhhc-cCCcEEEEeecccchhhhhhccCcch
Confidence            456899999999999999999999887  888888754211   111111111 112222211    1234567899999


Q ss_pred             EEEcCCC
Q 022263          100 VIIPAGV  106 (300)
Q Consensus       100 VIi~ag~  106 (300)
                      ++.+++.
T Consensus        79 ~~~~~~~   85 (312)
T d1qyda_          79 VISALAG   85 (312)
T ss_dssp             EEECCCC
T ss_pred             hhhhhhh
Confidence            9998764

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00022  Score=62.86  Aligned_cols=109  Identities=19%  Similarity=0.093  Sum_probs=66.3

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc-------ccH-HHHhccccCCCcEEEEecC-Cc---cccccCCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-------PGV-AADVGHINTRSEVAGYMGN-DQ---LGQALEDS   97 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~-------~g~-~~dl~~~~~~~~v~~~~~t-~d---~~~a~~~a   97 (300)
                      ||.|+||+|++|++++..|+..+.  +|+.+|....       ... ...+.... ...+..+.+. .|   +++++.+.
T Consensus         4 KILITG~tGfIGs~lv~~Ll~~g~--~V~~ld~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~~   80 (346)
T d1ek6a_           4 KVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKKY   80 (346)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHHC
T ss_pred             eEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCccccccccchHHHHHHHHhc-CCCcEEEEeecccccccccccccc
Confidence            899999999999999999999887  8999985210       111 11111111 1133333221 22   33445444


Q ss_pred             C--EEEEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCCCeEE
Q 022263           98 D--VVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (300)
Q Consensus        98 D--iVIi~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~a~v  141 (300)
                      |  +|+++|+.+....  ....+.+..|+.....+.+.+++++.+-++
T Consensus        81 ~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i  128 (346)
T d1ek6a_          81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLV  128 (346)
T ss_dssp             CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCccccc
Confidence            4  6777887542111  123455778999999999999888766444

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=97.28  E-value=0.0015  Score=57.36  Aligned_cols=104  Identities=18%  Similarity=0.148  Sum_probs=64.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc----cccccCCCCEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ----LGQALEDSDVVI  101 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d----~~~a~~~aDiVI  101 (300)
                      +.++|+|+||+|++|++++..|++.++  +|+.+-++........+....   .++...++ .|    ++.+++++|.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~---~v~~~~gD~~d~~~~~~~a~~~~~~~~   76 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAIP---NVTLFQGPLLNNVPLMDTLFEGAHLAF   76 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTST---TEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC--eEEEEECCcchhhhhhhcccC---CCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence            345899999999999999999999887  788886654332222332211   23332221 12    345789999988


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +.....          ...|....+.+++...+.+-.-+++..|
T Consensus        77 ~~~~~~----------~~~~~~~~~~~~~aa~~agv~~~v~~Ss  110 (350)
T d1xgka_          77 INTTSQ----------AGDEIAIGKDLADAAKRAGTIQHYIYSS  110 (350)
T ss_dssp             ECCCST----------TSCHHHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred             eecccc----------cchhhhhhhHHHHHHHHhCCCceEEEee
Confidence            864321          1234555566777777666444444433

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.26  E-value=0.0001  Score=58.72  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=31.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT   65 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~   65 (300)
                      |||+||||+|.+|.++|..|+..|+  +|+++++++.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~--~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCHH
Confidence            8999996679999999999999998  9999998753

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.26  E-value=0.00016  Score=59.02  Aligned_cols=76  Identities=18%  Similarity=0.238  Sum_probs=46.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHH-HhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA-DVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~-dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      .+++||+|+||+|.+|.-+...|..++.+ ||..+-.++..|+.. +..............  ...++.++++|+|+.+.
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~-ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dvvf~al   79 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQF-RIKVMTADRKAGEQFGSVFPHLITQDLPNLV--AVKDADFSNVDAVFCCL   79 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECSTTTTSCHHHHCGGGTTSCCCCCB--CGGGCCGGGCSEEEECC
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCc-eEEEEeccccCCCccccccccccccccccch--hhhhhhhcccceeeecc
Confidence            35789999999999999999999988765 676665544333322 111111111111111  12235578999999985

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.23  E-value=0.00021  Score=54.71  Aligned_cols=69  Identities=17%  Similarity=0.212  Sum_probs=44.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC--Ccccc-ccCCCCEEEEcCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN--DQLGQ-ALEDSDVVIIPAG  105 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t--~d~~~-a~~~aDiVIi~ag  105 (300)
                      ++.|+|+ |.+|+.++..|...|+  +++++|.++...  .++.+...  .+..-.++  .-+++ .+++||.||++.+
T Consensus         2 ~~iIiG~-G~~G~~la~~L~~~g~--~vvvid~d~~~~--~~~~~~~~--~~~~gd~~~~~~l~~a~i~~a~~vi~~~~   73 (134)
T d2hmva1           2 QFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEEKV--NAYASYAT--HAVIANATEENELLSLGIRNFEYVIVAIG   73 (134)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHHHH--HHTTTTCS--EEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCC--eEEEecCcHHHH--HHHHHhCC--cceeeecccchhhhccCCccccEEEEEcC
Confidence            6899996 9999999999999998  899999975422  23333221  11111111  11222 3789999888753

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=97.18  E-value=0.00035  Score=57.41  Aligned_cols=101  Identities=23%  Similarity=0.282  Sum_probs=63.2

Q ss_pred             CCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEE
Q 022263           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (300)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiV  100 (300)
                      +........+|+|||. |.+|+.++..+...+.  ++..+|.............      ...   ..++++.++.||+|
T Consensus        40 ~~~~~l~g~tvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~------~~~---~~~l~~ll~~sD~v  107 (191)
T d1gdha1          40 LVGEKLDNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASYQ------ATF---HDSLDSLLSVSQFF  107 (191)
T ss_dssp             TCBCCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHHT------CEE---CSSHHHHHHHCSEE
T ss_pred             cccceecccceEEeec-ccchHHHHHHHHhhcc--ccccccccccccchhhccc------ccc---cCCHHHHHhhCCeE
Confidence            3344455679999995 9999999998887776  8999998553222111111      111   13567889999999


Q ss_pred             EEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       101 Ii~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ++.....  +. ++ .++  |.+       .+....|++++|+++=
T Consensus       108 ~l~~plt--~~-T~-~li--~~~-------~l~~mk~~a~lIN~sR  140 (191)
T d1gdha1         108 SLNAPST--PE-TR-YFF--NKA-------TIKSLPQGAIVVNTAR  140 (191)
T ss_dssp             EECCCCC--TT-TT-TCB--SHH-------HHTTSCTTEEEEECSC
T ss_pred             EecCCCC--ch-Hh-hee--cHH-------HhhCcCCccEEEecCC
Confidence            9975321  11 11 112  222       2334457999999863

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.16  E-value=0.00039  Score=56.72  Aligned_cols=79  Identities=16%  Similarity=0.177  Sum_probs=53.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEE-EecCCccccccCCCCEEEEc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~-~~~t~d~~~a~~~aDiVIi~  103 (300)
                      +..+|.|+||+|.+|..++..|++.|.  +|+++|++..+.  .+..+........... ....++.++.+.++|+||.+
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin~   99 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTA   99 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhcc--chhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeeec
Confidence            445899999999999999999999997  899999975322  2222222111111111 11123566779999999999


Q ss_pred             CCCC
Q 022263          104 AGVP  107 (300)
Q Consensus       104 ag~~  107 (300)
                      ||.+
T Consensus       100 Ag~g  103 (191)
T d1luaa1         100 GAIG  103 (191)
T ss_dssp             CCTT
T ss_pred             Cccc
Confidence            8864

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00093  Score=56.79  Aligned_cols=106  Identities=12%  Similarity=0.104  Sum_probs=64.8

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-C--CccccccCCCCEEEEcCCCC
Q 022263           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-N--DQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t--~d~~~a~~~aDiVIi~ag~~  107 (300)
                      |.|+||+|++|++++..|++.|. .+|+.+|.-........+.+.... ....... .  ......+.++++|++.|+..
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~-~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~   79 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLNIA-DYMDKEDFLIQIMAGEEFGDVEAIFHEGACS   79 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTC-CCEEEEECCSSGGGGHHHHTSCCS-EEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred             EEEecCccHHHHHHHHHHHhCCC-CeEEEEECCCCcchhhcccccchh-hhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence            78999999999999999999884 268888852211111112211100 0100000 0  00123568899999998766


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHhhCCC
Q 022263          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPN  138 (300)
Q Consensus       108 ~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~  138 (300)
                      ..+..........|......+.+...+.+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  110 (307)
T d1eq2a_          80 STTEWDGKYMMDNNYQYSKELLHYCLEREIP  110 (307)
T ss_dssp             CTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            5555555556667788888888887777654

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.09  E-value=0.00036  Score=56.92  Aligned_cols=104  Identities=25%  Similarity=0.309  Sum_probs=66.0

Q ss_pred             ccccc-CCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcccccc
Q 022263           16 AGARG-YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL   94 (300)
Q Consensus        16 ~~~~~-~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~   94 (300)
                      .|.+. |...+...++|+|+|. |.+|+.++..+..-+.  ++..+|.........+.       .++.    .++++.+
T Consensus        31 ~W~~~~~~~~~l~~k~vgiiG~-G~IG~~va~~~~~fg~--~v~~~d~~~~~~~~~~~-------~~~~----~~l~ell   96 (184)
T d1ygya1          31 TWKRSSFSGTEIFGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQL-------GIEL----LSLDDLL   96 (184)
T ss_dssp             CCCGGGCCBCCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHH-------TCEE----CCHHHHH
T ss_pred             CCCccccccccccceeeeeccc-cchhHHHHHHhhhccc--eEEeecCCCChhHHhhc-------Ccee----ccHHHHH
Confidence            35443 4445556779999995 9999999998887666  89999975433332221       1121    2567889


Q ss_pred             CCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +.||+|++.....  +. ++ .++  |.+       .+....|++++|+++=
T Consensus        97 ~~sDiv~~~~Plt--~~-T~-~li--n~~-------~l~~mk~~a~lIN~sR  135 (184)
T d1ygya1          97 ARADFISVHLPKT--PE-TA-GLI--DKE-------ALAKTKPGVIIVNAAR  135 (184)
T ss_dssp             HHCSEEEECCCCS--TT-TT-TCB--CHH-------HHTTSCTTEEEEECSC
T ss_pred             hhCCEEEEcCCCC--ch-hh-hhh--hHH-------HHhhhCCCceEEEecc
Confidence            9999999975321  11 11 122  222       2344557999999963

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=97.08  E-value=0.0013  Score=54.03  Aligned_cols=98  Identities=22%  Similarity=0.330  Sum_probs=63.4

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEE
Q 022263           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        23 ~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      ..+....+|+|||. |.+|+.++..+..-|.  ++..||.........+..       +..   ..++++.++.||+|++
T Consensus        44 ~~eL~gktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~-------~~~---~~~l~~ll~~sD~i~~  110 (193)
T d1mx3a1          44 AARIRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-------LQR---VSTLQDLLFHSDCVTL  110 (193)
T ss_dssp             CCCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-------CEE---CSSHHHHHHHCSEEEE
T ss_pred             ceeeeCceEEEecc-ccccccceeeeecccc--ceeeccCcccccchhhhc-------ccc---ccchhhccccCCEEEE
Confidence            44456679999995 9999999999988777  999999854332221111       111   2467788999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .....  +. ++ .+  -|.+.       +....|++++|+++=
T Consensus       111 ~~plt--~~-T~-~l--i~~~~-------l~~mk~~a~lIN~sR  141 (193)
T d1mx3a1         111 HCGLN--EH-NH-HL--INDFT-------VKQMRQGAFLVNTAR  141 (193)
T ss_dssp             CCCCC--TT-CT-TS--BSHHH-------HTTSCTTEEEEECSC
T ss_pred             eeccc--cc-ch-hh--hhHHH-------HhccCCCCeEEecCC
Confidence            86322  11 11 11  12222       334457999999863

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00055  Score=60.00  Aligned_cols=167  Identities=10%  Similarity=0.017  Sum_probs=92.3

Q ss_pred             ceE-EEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHHHHhccc---cCCCcEEEEecC-Cc---ccccc--C
Q 022263           29 RKV-AVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHI---NTRSEVAGYMGN-DQ---LGQAL--E   95 (300)
Q Consensus        29 ~KI-~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~~dl~~~---~~~~~v~~~~~t-~d---~~~a~--~   95 (300)
                      .|| .|+||+|++|++++..|...|+  +|+-+|+...   .+...++...   .....++.+.+. .|   ...++  .
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV   78 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc
Confidence            389 6999999999999999999998  9999998532   1111111111   011234443221 11   22233  3


Q ss_pred             CCCEEEEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhCC-C-eEEEEec------CCCcccHHHHHHHHHHhCCC
Q 022263           96 DSDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCP-N-AIVNMIS------NPVNSTVPIAAEVFKKAGTY  165 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~p-~-a~viv~t------NP~d~~~~i~~~~~~~~~~~  165 (300)
                      +.|+|++.++......  ....+.+..|+.-...+.+.+++++- + ..+|.+|      +|-+.   -+.    +...+
T Consensus        79 ~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~---~~~----E~~~~  151 (347)
T d1t2aa_          79 KPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEI---PQK----ETTPF  151 (347)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSS---SBC----TTSCC
T ss_pred             ccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCC---CCC----CCCCC
Confidence            5668888776542111  23345567788888889999988763 2 4555544      11110   001    11113


Q ss_pred             CCCcEEEeeehhHHHHHHHHHHHcCCCCCceEE-EEEecC
Q 022263          166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGH  204 (300)
Q Consensus       166 ~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~-~v~G~h  204 (300)
                      .|....|.+.+...++-...++..+++..-++. .+.|..
T Consensus       152 ~P~~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~  191 (347)
T d1t2aa_         152 YPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR  191 (347)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCC
Confidence            445556666555555555556777766555543 366754

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.03  E-value=0.0011  Score=53.43  Aligned_cols=74  Identities=19%  Similarity=0.231  Sum_probs=44.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEe-cC--CcccHHHHhccc--c--CCCcEEEEecCCccccccCCCCEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IA--NTPGVAADVGHI--N--TRSEVAGYMGNDQLGQALEDSDVV  100 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D-~~--~~~g~~~dl~~~--~--~~~~v~~~~~t~d~~~a~~~aDiV  100 (300)
                      |+||+|+||+|++|.-+...|..++.+ ||.-+- ..  ...|+...-.+.  .  ........   .+......++|++
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~-ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dvv   76 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHM-TITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPM---SDVRDFSADVDVV   76 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEE---SCGGGTCTTCCEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCC-ceEeeEeecccccccccccccccccccccccccccc---hhhhhhhccccee
Confidence            789999999999999999999998765 444332 21  122332211111  1  11122222   2334557899999


Q ss_pred             EEcCC
Q 022263          101 IIPAG  105 (300)
Q Consensus       101 Ii~ag  105 (300)
                      +++.+
T Consensus        77 f~alp   81 (179)
T d2g17a1          77 FLATA   81 (179)
T ss_dssp             EECSC
T ss_pred             ecccc
Confidence            99853

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=97.01  E-value=0.00035  Score=59.21  Aligned_cols=76  Identities=24%  Similarity=0.208  Sum_probs=48.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---c-HHHHhccccCCCcEEEEecC----CccccccCCCCE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---G-VAADVGHINTRSEVAGYMGN----DQLGQALEDSDV   99 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g-~~~dl~~~~~~~~v~~~~~t----~d~~~a~~~aDi   99 (300)
                      ++||.|+||+|++|++++..|...|.  +|+.++++...   . ....+.+... ..+....+.    ....++++++|.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~   79 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKA-SGANIVHGSIDDHASLVEAVKNVDV   79 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHT-TTCEEECCCTTCHHHHHHHHHTCSE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEECCCccccchhHHHHHHhhcc-CCcEEEEeecccchhhhhhhhhcee
Confidence            45999999999999999999999987  89999985421   1 1111111111 122222111    123456789999


Q ss_pred             EEEcCCC
Q 022263          100 VIIPAGV  106 (300)
Q Consensus       100 VIi~ag~  106 (300)
                      |+..++.
T Consensus        80 vi~~~~~   86 (307)
T d1qyca_          80 VISTVGS   86 (307)
T ss_dssp             EEECCCG
T ss_pred             eeecccc
Confidence            9988753

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.91  E-value=0.00027  Score=55.89  Aligned_cols=70  Identities=13%  Similarity=0.135  Sum_probs=46.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC---CccccccCCCCEEEEcC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN---DQLGQALEDSDVVIIPA  104 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t---~d~~~a~~~aDiVIi~a  104 (300)
                      .||.|+|| |.+|.++|..|...++  +|+++|++..+++  ++.+.... ........   ...++.+...|+++.+.
T Consensus         3 K~IliiGa-G~~G~~~a~~L~~~g~--~V~v~dr~~~~a~--~l~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~i~~~   75 (182)
T d1e5qa1           3 KSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLESAK--KLSAGVQH-STPISLDVNDDAALDAEVAKHDLVISLI   75 (182)
T ss_dssp             CEEEEECC-STTHHHHHHHHHTTTC--EEEEEESCHHHHH--HHHTTCTT-EEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECChHHHH--HHHhcccc-cccccccccchhhhHhhhhccceeEeec
Confidence            58999996 9999999999999998  8999999765333  34432211 11111111   12345578889888763

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.90  E-value=0.00057  Score=56.38  Aligned_cols=95  Identities=25%  Similarity=0.344  Sum_probs=60.7

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEE
Q 022263           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        23 ~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      ..+....+|+|||. |.+|+.+|..+..-|.  +|..||.........   +. .    .    ..++++.++.||+|++
T Consensus        38 g~el~gk~vgIiG~-G~IG~~va~~l~~fg~--~V~~~d~~~~~~~~~---~~-~----~----~~~l~~~l~~sDii~~  102 (197)
T d1j4aa1          38 GREVRDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPELEK---KG-Y----Y----VDSLDDLYKQADVISL  102 (197)
T ss_dssp             BCCGGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHH---TT-C----B----CSCHHHHHHHCSEEEE
T ss_pred             CccccCCeEEEecc-cccchhHHHhHhhhcc--cccccCccccccccc---ce-e----e----eccccccccccccccc
Confidence            34456679999995 9999999999988777  899999754321111   11 1    1    1356788999999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      .....  +. + ..++  |.+.       ++...+++++|+++
T Consensus       103 ~~plt--~~-T-~~li--~~~~-------l~~mk~~a~lIN~s  132 (197)
T d1j4aa1         103 HVPDV--PA-N-VHMI--NDES-------IAKMKQDVVIVNVS  132 (197)
T ss_dssp             CSCCC--GG-G-TTCB--SHHH-------HHHSCTTEEEEECS
T ss_pred             cCCcc--cc-c-cccc--cHHH-------HhhhCCccEEEecC
Confidence            85321  11 1 1111  2222       23445789999885

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.88  E-value=0.00075  Score=55.65  Aligned_cols=98  Identities=23%  Similarity=0.278  Sum_probs=63.7

Q ss_pred             CCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEE
Q 022263           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (300)
Q Consensus        21 ~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiV  100 (300)
                      |...+...++|+|+|. |.+|+.++..+..-+.  ++..||.....+...         ....    .++++.++.||+|
T Consensus        38 ~~~~~l~~ktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~---------~~~~----~~l~~l~~~~D~v  101 (199)
T d1dxya1          38 FIGKELGQQTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYPMKGDHP---------DFDY----VSLEDLFKQSDVI  101 (199)
T ss_dssp             CCCCCGGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSCCT---------TCEE----CCHHHHHHHCSEE
T ss_pred             cccccccceeeeeeec-ccccccccccccccce--eeeccCCccchhhhc---------chhH----HHHHHHHHhcccc
Confidence            5555556679999995 9999999999988777  999999854322100         1121    2566888999999


Q ss_pred             EEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022263          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus       101 Ii~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                      ++..-..  + .++ .++  |.       +.+....+++++|+++=.
T Consensus       102 ~~~~plt--~-~T~-~li--~~-------~~l~~mk~~a~lIN~aRG  135 (199)
T d1dxya1         102 DLHVPGI--E-QNT-HII--NE-------AAFNLMKPGAIVINTARP  135 (199)
T ss_dssp             EECCCCC--G-GGT-TSB--CH-------HHHHHSCTTEEEEECSCT
T ss_pred             eeeeccc--c-ccc-ccc--cH-------HHhhccCCceEEEecccH
Confidence            9975321  1 111 122  22       233344579999999643

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.87  E-value=0.0041  Score=52.65  Aligned_cols=113  Identities=24%  Similarity=0.308  Sum_probs=70.4

Q ss_pred             eE-EEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc----------cccccC
Q 022263           30 KV-AVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ----------LGQALE   95 (300)
Q Consensus        30 KI-~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d----------~~~a~~   95 (300)
                      || .|+||++-+|..++..|+..|.  .|++.|+++.+  ..+.++.+...  .+..+.. -+|          ..+.+.
T Consensus         2 KValITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKTLG   77 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            76 6779988999999999999997  89999997532  22334443221  2222211 111          123357


Q ss_pred             CCCEEEEcCCCCCCCC---Ccc---hhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRKPG---MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ..|++|..||......   .+.   ...+..|+    ...+...+.+.+.+..+.+++++.
T Consensus        78 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS  138 (255)
T d1gega_          78 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACS  138 (255)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccc
Confidence            8999999999753211   121   22334443    455667777788877888877754

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.85  E-value=0.00059  Score=59.52  Aligned_cols=170  Identities=9%  Similarity=-0.002  Sum_probs=88.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHH----HHhccccCCCcEEEEecC-Cc---ccccc--C
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVA----ADVGHINTRSEVAGYMGN-DQ---LGQAL--E   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~----~dl~~~~~~~~v~~~~~t-~d---~~~a~--~   95 (300)
                      .|+.|+||+|++|++++..|++.|+  +|+.+|....   ....    .+..+. ....++...+. .+   ++..+  .
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Di~~~~~~~~~~~~~   78 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNV-NKALMKLHYADLTDASSLRRWIDVI   78 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC---------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC--EEEEEECCCcccchhhhhhhhhhhhhc-cccceEEEEccccCHHHHHHHHhhh
Confidence            4789999999999999999999998  9999997421   1110    111111 11123332211 12   12223  4


Q ss_pred             CCCEEEEcCCCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhC----CCeEEEEecCCCcccH---HHHHHHHHHhCCCC
Q 022263           96 DSDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYC----PNAIVNMISNPVNSTV---PIAAEVFKKAGTYN  166 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g--~~r~dl~~~N~~i~~~i~~~i~~~~----p~a~viv~tNP~d~~~---~i~~~~~~~~~~~~  166 (300)
                      +.|+||++|+......  ..-.+....|......+...+++.+    ....++..+ .+....   ...+   +... +.
T Consensus        79 ~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~s-s~~~~~~~~~~~~---E~~~-~~  153 (339)
T d1n7ha_          79 KPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAG-SSEMFGSTPPPQS---ETTP-FH  153 (339)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE-EGGGGTTSCSSBC---TTSC-CC
T ss_pred             ccchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecc-cceecccCCCCCC---CCCC-CC
Confidence            6799999998643211  1222345566666666666555432    222333221 111000   0000   1111 33


Q ss_pred             CCcEEEeeehhHHHHHHHHHHHcCCCCCceEEE-EEecCCC
Q 022263          167 EKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVP-VVGGHAG  206 (300)
Q Consensus       167 ~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~-v~G~h~g  206 (300)
                      |....|.+.+...++-...++..+++..-++.. |.|.+.+
T Consensus       154 p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~  194 (339)
T d1n7ha_         154 PRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRG  194 (339)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             CcchhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCC
Confidence            445555565555666566667778766666533 7787644

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.83  E-value=0.0015  Score=53.02  Aligned_cols=105  Identities=20%  Similarity=0.247  Sum_probs=61.6

Q ss_pred             hhhhhhhhhhccccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccccCCC--
Q 022263            3 SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRS--   79 (300)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~--   79 (300)
                      .+|+..-..|.|+....-=.....+|-||.|+|| |.+|..-+......|-  .+..+|++... .+..++.......  
T Consensus         4 ~av~~aa~~l~k~~~~l~~~~g~V~pa~VvViGa-GvaG~~Aa~~A~~lGA--~V~v~D~~~~~~~~l~~l~~~~i~~~~   80 (183)
T d1l7da1           4 RAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGV-GVAGLQAIATAKRLGA--VVMATDVRAATKEQVESLGGKFITVDD   80 (183)
T ss_dssp             HHHHHHHHHCSSCSSCEEETTEEECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHHHHHHTTCEECCC--
T ss_pred             HHHHHHHHHhhhhcCCcccccCCcCCcEEEEEcC-cHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhhcceEEEec
Confidence            3555555666665544333444467789999996 9999988777666564  89999997642 2322222111000  


Q ss_pred             ----cEE---EEe----------cCCccccccCCCCEEEEcCCCCCCC
Q 022263           80 ----EVA---GYM----------GNDQLGQALEDSDVVIIPAGVPRKP  110 (300)
Q Consensus        80 ----~v~---~~~----------~t~d~~~a~~~aDiVIi~ag~~~~~  110 (300)
                          ...   .+.          ....+.+.+++||+||-++-.|.++
T Consensus        81 ~~~~~~~~~~gyA~~~s~~~~~~~~~~l~~~l~~aDlVI~talipG~~  128 (183)
T d1l7da1          81 EAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKP  128 (183)
T ss_dssp             ---------------------CCHHHHHHHHHTTCSEEEECCCCTTSC
T ss_pred             cccccccccccchhhcCHHHHHHHHHHHHHHHHhhhhheeeeecCCcc
Confidence                000   000          0011334588999999998776433

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.002  Score=52.07  Aligned_cols=37  Identities=27%  Similarity=0.469  Sum_probs=32.7

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..++.||+|||| |..|.+.|..|++.|+  ++.|+|...
T Consensus        40 ~~~~k~V~IIGa-GPAGL~AA~~la~~G~--~Vtl~E~~~   76 (179)
T d1ps9a3          40 AVQKKNLAVVGA-GPAGLAFAINAAARGH--QVTLFDAHS   76 (179)
T ss_dssp             CSSCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSS
T ss_pred             CCCCcEEEEECc-cHHHHHHHHHHHhhcc--ceEEEeccC
Confidence            345679999996 9999999999999998  999999864

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.79  E-value=0.011  Score=43.52  Aligned_cols=70  Identities=17%  Similarity=0.193  Sum_probs=47.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ..||.|||+ |.+|..-+..|...|-  ++.+++....... ..+.+..   .++......+ +++++++++|+.+.+
T Consensus        12 ~k~vlVvG~-G~va~~ka~~ll~~ga--~v~v~~~~~~~~~-~~~~~~~---~i~~~~~~~~-~~dl~~~~lv~~at~   81 (113)
T d1pjqa1          12 DRDCLIVGG-GDVAERKARLLLEAGA--RLTVNALTFIPQF-TVWANEG---MLTLVEGPFD-ETLLDSCWLAIAATD   81 (113)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTB--EEEEEESSCCHHH-HHHHTTT---SCEEEESSCC-GGGGTTCSEEEECCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccCChHH-HHHHhcC---CceeeccCCC-HHHhCCCcEEeecCC
Confidence            459999996 9999999999999886  8999988654322 2222221   3333222223 367999999998743

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.79  E-value=0.001  Score=54.19  Aligned_cols=96  Identities=17%  Similarity=0.214  Sum_probs=61.2

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      ....++|+|+|. |.+|..++..+...+.  ++..+|...... ...+..       +..   ..++++.+++||+|++.
T Consensus        41 ~l~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~-------~~~---~~~l~~~l~~sD~v~~~  107 (188)
T d2naca1          41 DLEAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LTW---HATREDMYPVCDVVTLN  107 (188)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHGGGCSEEEEC
T ss_pred             eccccceeeccc-cccchhhhhhhhccCc--eEEEEeecccccccccccc-------ccc---cCCHHHHHHhccchhhc
Confidence            345679999995 9999999998887776  899999854321 111111       111   24667889999999997


Q ss_pred             CCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       104 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ....  + .++ .++  |.       +.+....+++++|+++-
T Consensus       108 ~plt--~-~T~-~li--~~-------~~l~~mk~ga~lIN~aR  137 (188)
T d2naca1         108 CPLH--P-ETE-HMI--ND-------ETLKLFKRGAYIVNTAR  137 (188)
T ss_dssp             SCCC--T-TTT-TCB--SH-------HHHTTSCTTEEEEECSC
T ss_pred             cccc--c-cch-hhh--HH-------HHHHhCCCCCEEEecCc
Confidence            5332  1 111 111  22       22334457899999863

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00097  Score=47.87  Aligned_cols=72  Identities=17%  Similarity=0.234  Sum_probs=48.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      +..||+|+|. |..|.++|..|.+++.  ++.++|.+.......++.+..   .+.  .+..+ ++.+.+.|+||++-|.
T Consensus         4 ~~K~v~ViGl-G~sG~s~a~~L~~~g~--~v~~~D~~~~~~~~~~~~~~~---~~~--~~~~~-~~~~~~~d~vi~SPGi   74 (93)
T d2jfga1           4 QGKNVVIIGL-GLTGLSCVDFFLARGV--TPRVMDTRMTPPGLDKLPEAV---ERH--TGSLN-DEWLMAADLIVASPGI   74 (93)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESSSSCTTGGGSCTTS---CEE--ESBCC-HHHHHHCSEEEECTTS
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEeeCCcCchhHHHHhhcc---cee--ecccc-hhhhccCCEEEECCCC
Confidence            3458999996 9999999999999887  899999854322212222211   122  11212 3567899999999877


Q ss_pred             C
Q 022263          107 P  107 (300)
Q Consensus       107 ~  107 (300)
                      |
T Consensus        75 ~   75 (93)
T d2jfga1          75 A   75 (93)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.0018  Score=54.70  Aligned_cols=157  Identities=14%  Similarity=0.171  Sum_probs=85.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccC-CCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~-~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      +++.|+||++-+|..++..|++.|.  +|++.|+++.+.  ...++..... ...+.........-+.+...|++|..||
T Consensus         8 K~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnnAg   85 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNAA   85 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEeccc
Confidence            4899999999999999999999997  899999865321  1222222110 0000000000012234678999999998


Q ss_pred             CCCCCC---Ccc---hhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeee
Q 022263          106 VPRKPG---MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT  175 (300)
Q Consensus       106 ~~~~~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~  175 (300)
                      ......   .+.   ...+..|+    .+.+.+++.+.+....+.+++++.-...           . ..|..-.++.+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~-----------~-~~~~~~~Y~asK  153 (244)
T d1pr9a_          86 VALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQ-----------R-AVTNHSVYCSTK  153 (244)
T ss_dssp             CCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT-----------S-CCTTBHHHHHHH
T ss_pred             cccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeeccccccc-----------c-cccchhhhhhhH
Confidence            753221   121   22333343    4567777776666667777777532221           0 011111122221


Q ss_pred             hhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          176 LDVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       176 Lds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                      ---..+-+.+|.+++  +..|++-.+
T Consensus       154 aal~~lt~~lA~el~--~~gIrvN~I  177 (244)
T d1pr9a_         154 GALDMLTKVMALELG--PHKIRVNAV  177 (244)
T ss_dssp             HHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             HHHHHHHHHHHHHhC--CCcEEEEEE
Confidence            112346677888874  566665554

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.68  E-value=0.0019  Score=54.48  Aligned_cols=113  Identities=15%  Similarity=0.176  Sum_probs=67.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEecC-----CccccccCCCCEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN-----DQLGQALEDSDVV  100 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t-----~d~~~a~~~aDiV  100 (300)
                      .+++.|+||++-+|..++..|+..|.  .|++.|+++.+  ....++....   .+. ...+     ...-+.+...|++
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~---~~~-~Dv~~~~~v~~~~~~~g~iDil   78 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECPGIE---PVC-VDLGDWDATEKALGGIGPVDLL   78 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE---EEE-CCTTCHHHHHHHHTTCCCCSEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCe---EEE-EeCCCHHHHHHHHHHcCCCeEE
Confidence            35789999999999999999999997  89999986432  1122222111   011 0001     0112335789999


Q ss_pred             EEcCCCCCCCC---Ccc---hhhhhhh----HHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          101 IIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       101 Ii~ag~~~~~g---~~r---~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      |..||......   .+.   ...+..|    ..+.+...+.+.+....+.+|+++.
T Consensus        79 VnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS  134 (242)
T d1cyda_          79 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS  134 (242)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             EECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccch
Confidence            99999753221   121   1223334    3455666776666666677777754

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.0012  Score=52.72  Aligned_cols=74  Identities=23%  Similarity=0.245  Sum_probs=43.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccC--CCcEEEEecCCccccccCCCCEEEEc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~--~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      .++||+|+||+|.||+.++..+.+.+-+.=+..+|.......-.|+.....  +..+..   +.++++.++++|+||=.
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~---~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV---QSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE---ESCSTTTTTSCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCcee---eccHHHHhcccceEEEe
Confidence            578999999889999999988877643222345565332111113322211  112232   24667788999987653

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0085  Score=50.76  Aligned_cols=117  Identities=20%  Similarity=0.241  Sum_probs=72.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEec-CCc----------cccccC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQ----------LGQALE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d----------~~~a~~   95 (300)
                      +.+.|+||++-+|.++|..|++.|.  .|++.|+++.  +..+.++.....+..+..+.. -++          ..+.+.
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            3689999999999999999999998  8999998653  222334444332223333211 112          223357


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---chhhhhhh----HHHHHHHHHHHHhhCC-CeEEEEecCC
Q 022263           96 DSDVVIIPAGVPRKPG---MT---RDDLFNIN----AGIVKDLCSAIAKYCP-NAIVNMISNP  147 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~~---r~dl~~~N----~~i~~~i~~~i~~~~p-~a~viv~tNP  147 (300)
                      ..|++|..||......   .+   ....+..|    .-..+.+++.+++... .+.+|+++-.
T Consensus        89 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~  151 (257)
T d1xg5a_          89 GVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSM  151 (257)
T ss_dssp             CCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCG
T ss_pred             CCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEech
Confidence            8999999998753211   11   12233333    4566777888777653 6777777543

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.62  E-value=0.0012  Score=51.95  Aligned_cols=70  Identities=21%  Similarity=0.414  Sum_probs=45.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      -||+|+||+|.+|.-+...|.++++ ..++.++..++..|+.  +.... + ......   ..+..+.++|+++++.+
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~--~~~~~-~-~~~~~~---~~~~~~~~~d~~f~~~~   72 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKS--LKFKD-Q-DITIEE---TTETAFEGVDIALFSAG   72 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCE--EEETT-E-EEEEEE---CCTTTTTTCSEEEECSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccccc--ccccC-C-cccccc---cchhhhhhhhhhhhccC
Confidence            3899999999999999998888763 4578888664433331  11111 1 122111   22356889999999864

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.61  E-value=0.00084  Score=53.35  Aligned_cols=103  Identities=25%  Similarity=0.332  Sum_probs=63.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      +..||.|||+ |.+|..++..|...+. +++.++.+...+++  ++.... ......   -+++.+++.++|+||.+.+.
T Consensus        23 ~~~~ilviGa-G~~g~~v~~~L~~~g~-~~i~v~nRt~~ka~--~l~~~~-~~~~~~---~~~~~~~l~~~Divi~atss   94 (159)
T d1gpja2          23 HDKTVLVVGA-GEMGKTVAKSLVDRGV-RAVLVANRTYERAV--ELARDL-GGEAVR---FDELVDHLARSDVVVSATAA   94 (159)
T ss_dssp             TTCEEEEESC-CHHHHHHHHHHHHHCC-SEEEEECSSHHHHH--HHHHHH-TCEECC---GGGHHHHHHTCSEEEECCSS
T ss_pred             ccCeEEEECC-CHHHHHHHHHHHhcCC-cEEEEEcCcHHHHH--HHHHhh-hccccc---chhHHHHhccCCEEEEecCC
Confidence            4569999996 9999999999988774 57999987543332  222211 111211   13667889999999998775


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhC--CCeEEEEecCCCc
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNPVN  149 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--p~a~viv~tNP~d  149 (300)
                      +. +-        -..+.++   +.+++..  ...+++=.+.|-|
T Consensus        95 ~~-~i--------i~~~~i~---~~~~~r~~~~~~~iiDlavPr~  127 (159)
T d1gpja2          95 PH-PV--------IHVDDVR---EALRKRDRRSPILIIDIANPRD  127 (159)
T ss_dssp             SS-CC--------BCHHHHH---HHHHHCSSCCCEEEEECCSSCS
T ss_pred             CC-cc--------ccHhhhH---HHHHhcccCCCeEEEeecCCCC
Confidence            42 11        1112222   2233332  2346777799977

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.51  E-value=0.021  Score=45.24  Aligned_cols=72  Identities=19%  Similarity=0.260  Sum_probs=47.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +..+|.|+|+ |-++.++++.|.+.+  .+|.+++++..+++  +..+...   ..+....  .+ ...+.++|+||.+.
T Consensus        17 ~~k~vlIlGa-GGaarai~~aL~~~~--~~i~I~nR~~~~a~~l~~~~~~~---~~~~~~~--~~-~~~~~~~diiIN~t   87 (171)
T d1p77a1          17 PNQHVLILGA-GGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQPY---GNIQAVS--MD-SIPLQTYDLVINAT   87 (171)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGGG---SCEEEEE--GG-GCCCSCCSEEEECC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHcccC--ceeeeccchHHHHHHHHHHHhhc---cccchhh--hc-cccccccceeeecc
Confidence            4458999995 999999999888754  48999998754333  2333321   1333322  12 23478999999986


Q ss_pred             CCC
Q 022263          105 GVP  107 (300)
Q Consensus       105 g~~  107 (300)
                      ...
T Consensus        88 p~g   90 (171)
T d1p77a1          88 SAG   90 (171)
T ss_dssp             CC-
T ss_pred             ccc
Confidence            543

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.49  E-value=0.0026  Score=53.24  Aligned_cols=111  Identities=20%  Similarity=0.272  Sum_probs=65.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      .+++.|+||++-+|..++..|++.|.  +|++.|+++..  ..+..+....+.++..  -+...+.+...|++|..||.+
T Consensus         4 gK~~lVTGas~GIG~aia~~l~~~Ga--~V~~~~r~~~~--l~~~~~~~~~~Dv~~~--~~~~~~~~g~iD~lVnnAG~~   77 (234)
T d1o5ia_           4 DKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEEL--LKRSGHRYVVCDLRKD--LDLLFEKVKEVDILVLNAGGP   77 (234)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHTCSEEEECCTTTC--HHHHHHHSCCCSEEEECCCCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHH--HHhcCCcEEEcchHHH--HHHHHHHhCCCcEEEeccccc
Confidence            35899999999999999999999997  89999986421  1111111000011000  012335578899999999976


Q ss_pred             CCCC---Ccch---hhhhhhH----HHHHHHHHHHHhhCCCeEEEEec
Q 022263          108 RKPG---MTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       108 ~~~g---~~r~---dl~~~N~----~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ....   .+..   +.+..|.    .+.+...+.+++.. .+.+|+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~-~G~ii~i~  124 (234)
T d1o5ia_          78 KAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAIT  124 (234)
T ss_dssp             CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccc-cccccccc
Confidence            4321   1211   2233343    35677777777654 45555554

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.45  E-value=0.013  Score=49.28  Aligned_cols=116  Identities=14%  Similarity=0.121  Sum_probs=71.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc----------cccc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ----------LGQA   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d----------~~~a   93 (300)
                      +.+.+.|+||++-+|..++..|+..|.  .|++.|+++..  ..+.++..   ...+..+.. -+|          ..+.
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC---CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            445788899999999999999999997  89999986532  22223322   112332221 111          1233


Q ss_pred             cCCCCEEEEcCCCCCCCC---Ccch---hhhhhh----HHHHHHHHHHHHhhCCCeEEEEecCC
Q 022263           94 LEDSDVVIIPAGVPRKPG---MTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g---~~r~---dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                      +...|++|..||......   .+..   +.+..|    ....+..++.+.+....+.+|+++..
T Consensus        80 ~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~  143 (251)
T d1zk4a1          80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI  143 (251)
T ss_dssp             HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred             hCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeecc
Confidence            567899999998753221   2222   233444    34567777777776666787777643

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.44  E-value=0.006  Score=47.59  Aligned_cols=61  Identities=16%  Similarity=0.163  Sum_probs=38.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ||++||. |.||+.++..|...++  .+ .++....+.  .++.....   ...    .. .+.+.++|++|++.
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~--~~-~~~~~~~~~--~~~~~~~~---~~~----~~-~~~~~~~~~~i~~~   62 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFP--TL-VWNRTFEKA--LRHQEEFG---SEA----VP-LERVAEARVIFTCL   62 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSC--EE-EECSSTHHH--HHHHHHHC---CEE----CC-GGGGGGCSEEEECC
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCC--EE-EEeCCHHHH--HHHHHHcC---Ccc----cc-cccccceeEEEecc
Confidence            7999995 9999999999998775  44 555543322  22222211   111    12 35678899998873

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.02  Score=48.06  Aligned_cols=116  Identities=21%  Similarity=0.296  Sum_probs=71.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEec-CCcc----------ccccC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQL----------GQALE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~a~~   95 (300)
                      ..+.|+||++-+|..++..|++.|.  .|++.|+++.  +..+.++....  .++..+.. -+|.          .+.+.
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~g   83 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEIG   83 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            3678889988899999999999997  8999999753  22333443321  12222211 1121          23467


Q ss_pred             CCCEEEEcCCCCCCCCC--cc----hhhhhhh----HHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263           96 DSDVVIIPAGVPRKPGM--TR----DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g~--~r----~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      ..|++|..||.......  ..    .+.+.-|    .-..+.+.+.+.+. ..+.+|+++....
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~G~Iv~isS~~~  146 (244)
T d1yb1a_          84 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASAAG  146 (244)
T ss_dssp             CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC-
T ss_pred             CCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhc-CCceEEEeecchh
Confidence            89999999997543221  11    1223333    45667777777665 4677777765544

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.0018  Score=52.65  Aligned_cols=93  Identities=26%  Similarity=0.403  Sum_probs=60.8

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +....+|+|+|. |.+|..++..+...+.  ++..+|.......    .      ....   ..++++.++.||+|++..
T Consensus        41 ~l~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~----~------~~~~---~~~l~ell~~sDii~i~~  104 (188)
T d1sc6a1          41 EARGKKLGIIGY-GHIGTQLGILAESLGM--YVYFYDIENKLPL----G------NATQ---VQHLSDLLNMSDVVSLHV  104 (188)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCCCC----T------TCEE---CSCHHHHHHHCSEEEECC
T ss_pred             cccceEEEEeec-ccchhhhhhhcccccc--eEeeccccccchh----h------hhhh---hhhHHHHHhhccceeecc
Confidence            345679999995 9999999998888777  9999997532111    0      1111   135778899999999986


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...  + .++ .++  |.+       .++...+++++|+++=
T Consensus       105 plt--~-~T~-~li--~~~-------~l~~mk~~a~lIN~aR  133 (188)
T d1sc6a1         105 PEN--P-STK-NMM--GAK-------EISLMKPGSLLINASR  133 (188)
T ss_dssp             CSS--T-TTT-TCB--CHH-------HHHHSCTTEEEEECSC
T ss_pred             cCC--c-chh-hhc--cHH-------HHhhCCCCCEEEEcCc
Confidence            432  1 111 111  222       2344567999999863

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.26  E-value=0.028  Score=47.02  Aligned_cols=113  Identities=19%  Similarity=0.258  Sum_probs=67.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCcc----------ccccCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQL----------GQALED   96 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~a~~~   96 (300)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++.+.....+++..  .++..+.. -+|.          .+.+-.
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~   80 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFGR   80 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            34678899989999999999999997  899999976432222222221  12222211 1121          123568


Q ss_pred             CCEEEEcCCCCCCCC---Ccc---hhhhhhh----HHHHHHHHHHHHhhCCCeEEEEec
Q 022263           97 SDVVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        97 aDiVIi~ag~~~~~g---~~r---~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      .|++|..||......   .+.   ...+..|    ..+.+.+.+.+++.. .+.+|+++
T Consensus        81 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Iv~is  138 (247)
T d2ew8a1          81 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLT  138 (247)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC-CCCccccc
Confidence            999999999753221   121   2233334    345677777777664 56666665

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.21  E-value=0.02  Score=48.22  Aligned_cols=113  Identities=15%  Similarity=0.181  Sum_probs=66.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEecC-Cc----------ccccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN-DQ----------LGQAL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t-~d----------~~~a~   94 (300)
                      .+.+.|+||++-+|..++..|++.|.  .|++.|++..+  ..+.++.+... ..+..+... +|          ..+.+
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKYG-VETMAFRCDVSNYEEVKKLLEAVKEKF   81 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHhC-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            34788999999999999999999997  89999986532  22333433211 122222110 11          11234


Q ss_pred             CCCCEEEEcCCCCCCCC---Ccc---hhhhhhh----HHHHHHHHHHHHhhCCCeEEEEe
Q 022263           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMI  144 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~r---~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~  144 (300)
                      ...|++|..||......   .+.   ...+..|    ..+.+..++.+++.. .+.+|++
T Consensus        82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~i  140 (251)
T d1vl8a_          82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD-NPSIINI  140 (251)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEE
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccc-ccccccc
Confidence            67999999999753221   121   2233344    345666777776554 4444444

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.19  E-value=0.00047  Score=53.86  Aligned_cols=62  Identities=11%  Similarity=0.065  Sum_probs=35.5

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      |++||+ |+||++++..|.....  ...++++++.+.  .++.+....   .    ..+.+++++.+|+||++.
T Consensus         2 IgfIG~-G~mg~~l~~~L~~~~~--~~~v~~R~~~~~--~~l~~~~~~---~----~~~~~~~~~~~DiVil~v   63 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKDRYE--IGYILSRSIDRA--RNLAEVYGG---K----AATLEKHPELNGVVFVIV   63 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC------CCCEECSSHHHH--HHHHHHTCC---C----CCSSCCCCC---CEEECS
T ss_pred             EEEEeC-cHHHHHHHHHHHhCCC--EEEEEeCChhhh--cchhhcccc---c----ccchhhhhccCcEEEEec
Confidence            689995 9999999987765443  235677654333  344433211   1    123457899999999986

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.17  E-value=0.0021  Score=54.16  Aligned_cols=114  Identities=18%  Similarity=0.249  Sum_probs=68.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-----HHHHhccccCCCcEEEEecCCccccccCCCCEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-----VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-----~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      +.+++.|+||++-+|..++..|++.|.  +|++.|++....     ...|+.+..   .++...  ....+.+...|++|
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~Dv~~~~---~v~~~~--~~~~~~~g~iDiLV   78 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSD---AVDRAF--TAVEEHQGPVEVLV   78 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHH---HHHHHH--HHHHHHHSSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCcchhcCceEEEEecCCHH---HHHHHH--HHHHHhcCCceEEE
Confidence            445899999989999999999999997  899999965321     122332221   111000  11234467899999


Q ss_pred             EcCCCCCCC---CCcc---hhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecCCC
Q 022263          102 IPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV  148 (300)
Q Consensus       102 i~ag~~~~~---g~~r---~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~  148 (300)
                      ..||.....   ..+.   .+.+..|+    .+.+...+.+.+.. .+.||+++.-.
T Consensus        79 nnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Iv~isS~~  134 (237)
T d1uzma1          79 SNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK-FGRMIFIGSVS  134 (237)
T ss_dssp             EECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCC
T ss_pred             eeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccC-CCceEEEcchh
Confidence            999974321   1122   22344443    34566667766554 56666665433

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.17  E-value=0.015  Score=49.24  Aligned_cols=156  Identities=16%  Similarity=0.185  Sum_probs=86.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEecC-Cc----------cccc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ----------LGQA   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d----------~~~a   93 (300)
                      +.+.+.|+||++-+|..++..|+..|.  .|++.|+++.  +....++.+...  .+..+... +|          ..+.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVRD   79 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            344788999999999999999999997  8999998653  222334443221  22222110 11          1233


Q ss_pred             cCCCCEEEEcCCCCCCCC----Cc---chhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHh
Q 022263           94 LEDSDVVIIPAGVPRKPG----MT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKA  162 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g----~~---r~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~  162 (300)
                      +...|++|..||.....+    .+   ....+..|+    ...+...+.+.+. ..+.+|+++....           ..
T Consensus        80 ~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~-~~G~II~isS~~~-----------~~  147 (260)
T d1zema1          80 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTASMAG-----------VK  147 (260)
T ss_dssp             HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-----------HS
T ss_pred             hCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh-cCCCCCeeechhh-----------cc
Confidence            568999999998643222    12   122333443    3556666666654 4567776653211           11


Q ss_pred             CCCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       163 ~~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                      + .|..-.++.+.---..|.+.+|.+++  +..|++-.+
T Consensus       148 ~-~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I  183 (260)
T d1zema1         148 G-PPNMAAYGTSKGAIIALTETAALDLA--PYNIRVNAI  183 (260)
T ss_dssp             C-CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             C-CcchHHHHHHHHHHHHHHHHHHHHhh--hhCCEEEEe
Confidence            1 22211222222112346677888874  556655544

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.14  E-value=0.053  Score=46.09  Aligned_cols=116  Identities=12%  Similarity=0.107  Sum_probs=65.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEec-CCc----------ccccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQ----------LGQAL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d----------~~~a~   94 (300)
                      .+.+.|+||+|-+|.+++..|+..|.  +|++.|++..  ...+.++...... .+..+.. -++          ..+.+
T Consensus        25 gK~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~~  101 (294)
T d1w6ua_          25 GKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQTGN-KVHAIQCDVRDPDMVQNTVSELIKVA  101 (294)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHSS-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhcCC-ceEEEEecccChHHHHHHhhhhhhhc
Confidence            34688999999999999999999997  8999999653  2223344322111 1222111 111          12335


Q ss_pred             CCCCEEEEcCCCCCCCCC---c---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPGM---T---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~---~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|..||.......   +   ..+.+..|..    .....+..+........+++.+.
T Consensus       102 g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss  163 (294)
T d1w6ua_         102 GHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITT  163 (294)
T ss_dssp             CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhccccccccccccccccc
Confidence            689999999986533221   1   1122233322    23444455555555666555543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.12  E-value=0.026  Score=47.49  Aligned_cols=112  Identities=21%  Similarity=0.241  Sum_probs=69.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEec-CCc----------ccccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQ----------LGQAL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d----------~~~a~   94 (300)
                      .+.+.|+||++-+|..++..|++.|.  +|++.|+++.  +....++..     .+..+.. -+|          ..+.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~-----~~~~~~~Dvt~~~~v~~~~~~~~~~~   77 (256)
T d1k2wa_           5 GKTALITGSARGIGRAFAEAYVREGA--RVAIADINLEAARATAAEIGP-----AACAIALDVTDQASIDRCVAELLDRW   77 (256)
T ss_dssp             TEEEEEETCSSHHHHHHHHHHHHTTE--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----ceEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            34788999999999999999999997  8999998653  222333321     1111110 011          11234


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|..||......   .+   ....+..|+    .+.+..++.+.+....+.||+++.
T Consensus        78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS  139 (256)
T d1k2wa_          78 GSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMAS  139 (256)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccc
Confidence            68999999999753211   12   222344454    455667777777766778877754

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.10  E-value=0.0023  Score=54.25  Aligned_cols=40  Identities=15%  Similarity=0.269  Sum_probs=33.9

Q ss_pred             CCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        22 ~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ++...++.||+|||| |..|.+.|..|++.|+  +|.|+|...
T Consensus        24 ~~~~~~pkkV~IIGa-G~aGLsaA~~L~~~G~--~V~vlE~~~   63 (370)
T d2iida1          24 LKATSNPKHVVIVGA-GMAGLSAAYVLAGAGH--QVTVLEASE   63 (370)
T ss_dssp             SCCCSSCCEEEEECC-BHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCCCCCCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            344456779999996 9999999999999998  999999754

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.10  E-value=0.022  Score=48.24  Aligned_cols=114  Identities=15%  Similarity=0.211  Sum_probs=69.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHHHHhccccCCCcEEEEec-CCc---c-------cccc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG-NDQ---L-------GQAL   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-t~d---~-------~~a~   94 (300)
                      +.+.|+||++-+|..++..|+..|.  +|++.|++..   +....++.....  .+..+.. -+|   .       .+.+
T Consensus         8 K~alITGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVGG--EAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--EEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4678889999999999999999997  8999998642   222333433211  2222111 011   1       1234


Q ss_pred             CCCCEEEEcCCCCCCCC---Ccc---hhhhhhh----HHHHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~r---~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|..||......   .+.   .+.+..|    ....+..++.+.+......|+++|.
T Consensus        84 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS  145 (261)
T d1geea_          84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS  145 (261)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             CCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhcccccccccccccc
Confidence            57899999999753221   122   2233444    4566777888877766676766654

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.90  E-value=0.029  Score=42.47  Aligned_cols=25  Identities=20%  Similarity=0.357  Sum_probs=21.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPL   53 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~   53 (300)
                      |||+|.|++|.+|+.++..+...++
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~   25 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGH   25 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCC
Confidence            7999999889999999887777665

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.90  E-value=0.041  Score=46.03  Aligned_cols=115  Identities=16%  Similarity=0.154  Sum_probs=68.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc----------ccc
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ----------LGQ   92 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d----------~~~   92 (300)
                      .+.+.+.|+||++-+|..++..|++.|.  +|++.|+++.+  ....++.+.     ...+.. -+|          ..+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~Dv~~~~~v~~~~~~~~~   76 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADA-----ARYVHLDVTQPAQWKAAVDTAVT   76 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGG-----EEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhCc-----ceEEEeecCCHHHHHHHHHHHHH
Confidence            3445788899999999999999999997  89999996532  223333321     111110 011          123


Q ss_pred             ccCCCCEEEEcCCCCCCC---CCcc---hhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecCCC
Q 022263           93 ALEDSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV  148 (300)
Q Consensus        93 a~~~aDiVIi~ag~~~~~---g~~r---~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~  148 (300)
                      .+...|++|..||.....   ..+.   .+.+..|+    .+.+...+.+.+. +.+.+|+++...
T Consensus        77 ~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS~~  141 (244)
T d1nffa_          77 AFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSIE  141 (244)
T ss_dssp             HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGG
T ss_pred             HhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc-CcceEEeccccc
Confidence            356799999999974321   1121   22333443    4456666666655 456777775433

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.031  Score=46.93  Aligned_cols=114  Identities=19%  Similarity=0.144  Sum_probs=70.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCcc----------ccccC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQL----------GQALE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d~----------~~a~~   95 (300)
                      +.+.|+||++-+|.+++..|++.|.  .|++.|++..+  ....++........+..+.. -+|.          .+.+-
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            4678889999999999999999997  89999996532  22334433222223332211 1121          12346


Q ss_pred             CCCEEEEcCCCCCCCCCcchhhhhhhH----HHHHHHHHHHHhhC--CCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRKPGMTRDDLFNINA----GIVKDLCSAIAKYC--PNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~dl~~~N~----~i~~~i~~~i~~~~--p~a~viv~tN  146 (300)
                      ..|++|..||.....  +..+.+..|+    ...+...+.+.+..  ..+.||+++.
T Consensus        82 ~iDilVnnAg~~~~~--~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS  136 (254)
T d2gdza1          82 RLDILVNNAGVNNEK--NWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS  136 (254)
T ss_dssp             CCCEEEECCCCCCSS--SHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CcCeecccccccccc--cchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeecc
Confidence            799999999976432  2333344443    45666777776553  3477777754

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=95.87  E-value=0.044  Score=46.03  Aligned_cols=116  Identities=16%  Similarity=0.203  Sum_probs=70.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc----------ccccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ----------LGQAL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d----------~~~a~   94 (300)
                      .+.+.|+||++-+|..++..|++.|.  .|++.|++..+  ..+.++..... ..+..+.. -+|          ..+.+
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEFG-VKTKAYQCDVSNTDIVTKTIQQIDADL   85 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHHT-CCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHhC-CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            34788999989999999999999997  89999997532  22223322111 12222211 011          12345


Q ss_pred             CCCCEEEEcCCCCCCCC---Ccc---hhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ...|++|..||......   .+.   .+.+..|+    ...+...+.+.+....+.+++.+.
T Consensus        86 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s  147 (260)
T d1h5qa_          86 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS  147 (260)
T ss_dssp             CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeec
Confidence            68999999998753211   122   22334443    456777788877777777766543

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.87  E-value=0.005  Score=48.88  Aligned_cols=66  Identities=20%  Similarity=0.401  Sum_probs=43.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      +++||+|+|. |++|+..+..+.+.+-+.-+.++|.+.....         ......   ..+.++...+.|+|+++..
T Consensus         2 ~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---------~~~~~~---~~~~~~~~~~~D~Vvi~tp   67 (170)
T d1f06a1           2 TNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---------KTPVFD---VADVDKHADDVDVLFLCMG   67 (170)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---------SSCEEE---GGGGGGTTTTCSEEEECSC
T ss_pred             CcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEeccccccc---------cccccc---chhhhhhccccceEEEeCC
Confidence            4579999995 9999998888877654434456666542111         112222   2455677789999999853

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.84  E-value=0.032  Score=39.49  Aligned_cols=69  Identities=25%  Similarity=0.298  Sum_probs=49.5

Q ss_pred             ceEEEEcCCCChH-HHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           29 RKVAVLGAAGGIG-QPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        29 ~KI~IIGaaG~VG-~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      |||-+||- |-+| +.+|..|.+.|+  +|.-.|..+.. ....|+...    ++.+.+ .+ .+.++++|+||.+.+.+
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~--~VsGSD~~~~~-~t~~L~~~G----i~i~~g-h~-~~~i~~~d~vV~SsAI~   71 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGN--DVYGSNIEETE-RTAYLRKLG----IPIFVP-HS-ADNWYDPDLVIKTPAVR   71 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTC--EEEEECSSCCH-HHHHHHHTT----CCEESS-CC-TTSCCCCSEEEECTTCC
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCC--eEEEEeCCCCh-hHHHHHHCC----CeEEee-ec-ccccCCCCEEEEecCcC
Confidence            79999995 8888 578899999998  99999986532 222355543    333332 23 35689999999998876

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=95.84  E-value=0.05  Score=45.77  Aligned_cols=115  Identities=19%  Similarity=0.235  Sum_probs=66.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCcc----------ccccC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQL----------GQALE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d~----------~~a~~   95 (300)
                      +.+.|+||++-+|..++..|+..|.  .|++.|++..+  ....++........+..+.. -+|.          .+.+.
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            4688899999999999999999997  89999986532  22223332222222322211 1121          22356


Q ss_pred             CCCEEEEcCCCCCCCC----Ccc---hhhhhhh----HHHHHHHHHHHHhhCCCeEEEEecC
Q 022263           96 DSDVVIIPAGVPRKPG----MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g----~~r---~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ..|++|..||.....+    .+.   ...+..|    ....+...+.+++.. .+.||+++.
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS  143 (258)
T d1iy8a_          83 RIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTAS  143 (258)
T ss_dssp             CCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhc-CCCCccccc
Confidence            8999999999643222    121   1233334    345566666666654 455566643

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.81  E-value=0.0051  Score=50.45  Aligned_cols=32  Identities=28%  Similarity=0.457  Sum_probs=29.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~   63 (300)
                      .||+|||| |..|.+.|+.|.+.+.  +|.|+|.+
T Consensus         7 ~kVvVIGa-GiaGl~~A~~L~~~G~--~V~vier~   38 (268)
T d1c0pa1           7 KRVVVLGS-GVIGLSSALILARKGY--SVHILARD   38 (268)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESS
T ss_pred             CcEEEECc-cHHHHHHHHHHHHCCC--CEEEEeCC
Confidence            48999996 9999999999999998  89999974

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.78  E-value=0.0033  Score=52.09  Aligned_cols=33  Identities=24%  Similarity=0.287  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      |||+|||| |..|.+.|+.|.+.|+  ++.|+|...
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~--~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGT--DAVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            79999996 9999999999999998  899998743

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.78  E-value=0.039  Score=46.25  Aligned_cols=153  Identities=18%  Similarity=0.248  Sum_probs=84.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEec-CCc----------cccccCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQ----------LGQALED   96 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d----------~~~a~~~   96 (300)
                      .+.|+||++-+|..++..|+..|.  .|++.|+++.  +..+.++.....  .+..+.. -+|          ..+.+..
T Consensus        12 valITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   87 (251)
T d2c07a1          12 VALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILTEHKN   87 (251)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            456779999999999999999987  8999998653  223334443221  2222211 112          1233568


Q ss_pred             CCEEEEcCCCCCCCC---Cc---chhhhhhh----HHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCC
Q 022263           97 SDVVIIPAGVPRKPG---MT---RDDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (300)
Q Consensus        97 aDiVIi~ag~~~~~g---~~---r~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~  166 (300)
                      .|++|..||......   .+   -.+.+..|    ....+...+.+.+.. .+.||+++....           ..+ .|
T Consensus        88 iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnisS~~~-----------~~~-~~  154 (251)
T d2c07a1          88 VDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISSIVG-----------LTG-NV  154 (251)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECCTHH-----------HHC-CT
T ss_pred             ceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCC-CeEEEEECCHHh-----------cCC-CC
Confidence            999999998754322   11   12223334    345567777777654 567777753222           011 22


Q ss_pred             CCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          167 EKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       167 ~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                      ..-.++.+.---..|.+.+|.+++  +..|++-.+
T Consensus       155 ~~~~Y~asKaal~~ltr~lA~el~--~~gIrVN~V  187 (251)
T d2c07a1         155 GQANYSSSKAGVIGFTKSLAKELA--SRNITVNAI  187 (251)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence            222222322112346677888774  555665544

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.74  E-value=0.027  Score=47.36  Aligned_cols=78  Identities=13%  Similarity=0.087  Sum_probs=50.4

Q ss_pred             CceEEEEcCCC--ChHHHHHHHHHhCCCCCEEEEEecCCc-ccHHHHhccccCCCcEEEEecCC---------ccccccC
Q 022263           28 DRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGND---------QLGQALE   95 (300)
Q Consensus        28 ~~KI~IIGaaG--~VG~~~a~~L~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~---------d~~~a~~   95 (300)
                      .+++.|+||+|  -+|.++|..|+..|.  +|++.|+++. ...+.++........+.....+.         +..+.+.
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga--~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   82 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   82 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHcC
Confidence            34899999877  499999999999998  9999999753 22333343332221221111111         1234467


Q ss_pred             CCCEEEEcCCCC
Q 022263           96 DSDVVIIPAGVP  107 (300)
Q Consensus        96 ~aDiVIi~ag~~  107 (300)
                      ..|++|..+|..
T Consensus        83 ~id~lV~nag~~   94 (274)
T d2pd4a1          83 SLDFIVHSVAFA   94 (274)
T ss_dssp             CEEEEEECCCCC
T ss_pred             CCCeEEeecccc
Confidence            899999999864

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.018  Score=45.11  Aligned_cols=133  Identities=17%  Similarity=0.275  Sum_probs=71.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      +..+|.|+|+ |.+|...+..+...|.  +++..|.+..+ ..+.++-   .. .+-.+..........++.|++|.++|
T Consensus        30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga--~~i~~~~~~~~~~~a~~lG---ad-~~i~~~~~~~~~~~~~~~D~vid~~g  102 (168)
T d1uufa2          30 PGKKVGVVGI-GGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKALG---AD-EVVNSRNADEMAAHLKSFDFILNTVA  102 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHT---CS-EEEETTCHHHHHTTTTCEEEEEECCS
T ss_pred             CCCEEEEecc-chHHHHHHHHhhcccc--cchhhccchhHHHHHhccC---Cc-EEEECchhhHHHHhcCCCceeeeeee
Confidence            4458999996 9999998888877775  66678875432 1222221   11 11111101112234578999999987


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe---eehhHHHHH
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV---TTLDVVRAK  182 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~---t~Lds~R~~  182 (300)
                      .+.            .      +-..+.-..|.+.+++++-|.+....+...  ...  +...+++|.   +.-|..++-
T Consensus       103 ~~~------------~------~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~--~l~--~k~~~i~Gs~~~~~~d~~e~l  160 (168)
T d1uufa2         103 APH------------N------LDDFTTLLKRDGTMTLVGAPATPHKSPEVF--NLI--MKRRAIAGSMIGGIPETQEML  160 (168)
T ss_dssp             SCC------------C------HHHHHTTEEEEEEEEECCCC-------CHH--HHH--TTTCEEEECCSCCHHHHHHHH
T ss_pred             cch------------h------HHHHHHHHhcCCEEEEeccCCCCcccccHH--HHH--HCCcEEEEEeecCHHHHHHHH
Confidence            531            1      112233455788988887665432211111  111  335688888   345555566


Q ss_pred             HHHHHH
Q 022263          183 TFYAGK  188 (300)
Q Consensus       183 ~~la~~  188 (300)
                      .+++++
T Consensus       161 ~l~a~~  166 (168)
T d1uufa2         161 DFCAEH  166 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            666553

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0061  Score=51.31  Aligned_cols=153  Identities=18%  Similarity=0.192  Sum_probs=83.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-------CccccccCCCCEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-------DQLGQALEDSDVV  100 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-------~d~~~a~~~aDiV  100 (300)
                      .+.+.|+||++.+|..++..|+..|.  +|++.|+++.+.  .++.+..   .++.....       +...+.+...|++
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~Vi~~~r~~~~l--~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~id~l   78 (245)
T d2ag5a1           6 GKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESKL--QELEKYP---GIQTRVLDVTKKKQIDQFANEVERLDVL   78 (245)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHH--GGGGGST---TEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHH--HHHHhcc---CCceeeeeccccccccccccccccceeE
Confidence            34678889999999999999999997  999999865321  1222211   11111100       1122346789999


Q ss_pred             EEcCCCCCCCC---Ccch---hhhhhh----HHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcE
Q 022263          101 IIPAGVPRKPG---MTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (300)
Q Consensus       101 Ii~ag~~~~~g---~~r~---dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kv  170 (300)
                      |..+|......   .+..   ..+.-|    ....+.+.+.+.+. +.+-+++++......          .+ ++..-.
T Consensus        79 Vn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~-~~g~Ii~isS~~~~~----------~~-~~~~~~  146 (245)
T d2ag5a1          79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSVASSV----------KG-VVNRCV  146 (245)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTT----------BC-CTTBHH
T ss_pred             EecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC-CCceeeeeechhhcc----------CC-ccchhH
Confidence            99999754321   1221   122223    34556667766655 456666665433210          00 111112


Q ss_pred             EEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          171 FGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       171 iG~t~Lds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                      ++.+.---..+-+.+|.+++  +..|++-.+
T Consensus       147 Y~~sKaal~~l~r~lA~e~~--~~gIrvN~I  175 (245)
T d2ag5a1         147 YSTTKAAVIGLTKSVAADFI--QQGIRCNCV  175 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhh--hhCcEEEEE
Confidence            22221112346677888874  556665544

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.016  Score=45.33  Aligned_cols=68  Identities=15%  Similarity=0.220  Sum_probs=42.1

Q ss_pred             CceEEEEcCCCChHHH-HHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           28 DRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~-~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      .+||+|||+ |.+|.. .+..+...+-++-+.++|.++.+..  .+.+..   .+..   .+++++..++.|+|+++.
T Consensus         1 Kiri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~--~~~~~~---~~~~---~~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           1 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKAL--PICESW---RIPY---ADSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHH--HHHHHH---TCCB---CSSHHHHHTTCSEEEECS
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhh--hhhhcc---cccc---cccchhhhhhcccccccc
Confidence            479999995 999975 5666666544444568888764332  122111   1111   235556678999999873

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.67  E-value=0.059  Score=45.31  Aligned_cols=157  Identities=13%  Similarity=0.064  Sum_probs=83.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCcc----------cccc-
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQL----------GQAL-   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d~----------~~a~-   94 (300)
                      .++.|+||++.+|..++..|++.|.  .|++.|+++.+  ....++.....  .+..+.. -++.          .+.+ 
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~~~   82 (258)
T d1ae1a_           7 TTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHVFD   82 (258)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHHhC
Confidence            3899999999999999999999997  89999986532  22223332221  1222111 1111          1223 


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhh----HHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCC
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~  164 (300)
                      ..-|++|..||......   .+   ....+..|    ....+.+.+.+.+. +.+.+|+++-.....            .
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-~~g~ii~isS~~~~~------------~  149 (258)
T d1ae1a_          83 GKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFLSSIAGFS------------A  149 (258)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEEECCGGGTS------------C
T ss_pred             CCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccc-ccccccccccccccc------------c
Confidence            24789999988753221   11   11222333    34556666666655 455666665433210            1


Q ss_pred             CCCCcEEEeeehhHHHHHHHHHHHcCCCCCce--EEEEEecC
Q 022263          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV--NVPVVGGH  204 (300)
Q Consensus       165 ~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V--~~~v~G~h  204 (300)
                      .|..-.++.+.---..|-+.+|++++  +..|  +++.-|-.
T Consensus       150 ~~~~~~Y~~sK~al~~lt~~lA~el~--~~gIrvN~I~PG~i  189 (258)
T d1ae1a_         150 LPSVSLYSASKGAINQMTKSLACEWA--KDNIRVNSVAPGVI  189 (258)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEECSB
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhcC--cCcEEEEEEeeCcc
Confidence            22221222221112345677888875  4545  45555654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.66  E-value=0.0053  Score=50.87  Aligned_cols=34  Identities=21%  Similarity=0.404  Sum_probs=30.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~   63 (300)
                      ...||+|||| |..|.++|..|.+.|+  +++++|..
T Consensus         3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~--~v~v~Er~   36 (265)
T d2voua1           3 TTDRIAVVGG-SISGLTAALMLRDAGV--DVDVYERS   36 (265)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSS
T ss_pred             CCCcEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCC
Confidence            3469999996 9999999999999998  99999974

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.65  E-value=0.054  Score=45.90  Aligned_cols=115  Identities=15%  Similarity=0.262  Sum_probs=67.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCC-CcEEEEecC-Cc---c-------ccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTR-SEVAGYMGN-DQ---L-------GQA   93 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~-~~v~~~~~t-~d---~-------~~a   93 (300)
                      .+.+.|+||++-+|.+++..|++.|.  .|++.|+++.  +..+.++...... ..+..+... +|   .       .+.
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            34789999999999999999999997  8999998653  2233344433221 133332211 11   1       123


Q ss_pred             cCCCCEEEEcCCCCCCCC-----Ccch---hhhhhhH----HHHHHHHHHHHhhCCCeEEEEec
Q 022263           94 LEDSDVVIIPAGVPRKPG-----MTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g-----~~r~---dl~~~N~----~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +...|++|..||.....+     ++..   ..+..|+    .+.+...+.+.+ ...+.+++.+
T Consensus        82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-~~~g~ii~~s  144 (274)
T d1xhla_          82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIK-TKGEIVNVSS  144 (274)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCEEEEECC
T ss_pred             cCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccc-cccccccchh
Confidence            457899999998643222     1211   1233343    355666666655 4566666654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=95.61  E-value=0.086  Score=44.33  Aligned_cols=114  Identities=18%  Similarity=0.248  Sum_probs=67.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc---c-------ccc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ---L-------GQA   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d---~-------~~a   93 (300)
                      +.+.+.|+||++-+|..++..|+..|.  +|++.|+++.+  ..+.++....   .+..+.. -+|   .       .+.
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSPD---VISFVHCDVTKDEDVRNLVDTTIAK   79 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTT---TEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCCC---ceEEEEccCCCHHHHHHHHHHHHHH
Confidence            344788999999999999999999997  89999986532  2233443321   2222211 011   1       123


Q ss_pred             cCCCCEEEEcCCCCC-CC----CCcc---hhhhhhh----HHHHHHHHHHHHhhCCCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPR-KP----GMTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~-~~----g~~r---~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +...|++|..||... .+    ..+.   ...+..|    .-..+...+.+.+.. .+.+|+++.
T Consensus        80 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~ii~iss  143 (268)
T d2bgka1          80 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK-KGSIVFTAS  143 (268)
T ss_dssp             HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT-CEEEEEECC
T ss_pred             cCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC-CCCcccccc
Confidence            468999999998643 22    1121   1233344    345566777776554 455555543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.61  E-value=0.021  Score=48.08  Aligned_cols=112  Identities=20%  Similarity=0.204  Sum_probs=64.3

Q ss_pred             eE-EEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEecC-Cc----------cccccC
Q 022263           30 KV-AVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ----------LGQALE   95 (300)
Q Consensus        30 KI-~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d----------~~~a~~   95 (300)
                      || .|+||++-+|..++..|++.|.  .|++.|+++.  +..+.++.+...  .+..+... +|          ..+.+-
T Consensus         3 KValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            56 6779989999999999999997  8999998653  222334443221  22222110 11          123356


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHHHHHHHHHHhh-----CCCeEEEEec
Q 022263           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY-----CPNAIVNMIS  145 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~-----~p~a~viv~t  145 (300)
                      ..|++|..||......   .+   -.+.+..|+.-...+.+.+.++     ...+.+++++
T Consensus        79 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~  139 (257)
T d2rhca1          79 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIA  139 (257)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEEC
T ss_pred             CCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccc
Confidence            8999999999753221   11   2234455555444444444321     2345566654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.15  Score=43.70  Aligned_cols=125  Identities=14%  Similarity=0.088  Sum_probs=71.6

Q ss_pred             ccCCCC-CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhcccc---CCCcEEEEecC-Ccc-
Q 022263           19 RGYSSE-SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN---TRSEVAGYMGN-DQL-   90 (300)
Q Consensus        19 ~~~~~~-~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~---~~~~v~~~~~t-~d~-   90 (300)
                      |.|+.- ..+.+.+.|+||++-+|..++..|+..|.  .|++.|++..  +..+.+|....   ....+..+... +|. 
T Consensus         2 ~~y~~~g~L~gKvalITGas~GIG~aia~~la~~Ga--~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~   79 (297)
T d1yxma1           2 RSYLAPGLLQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEE   79 (297)
T ss_dssp             CCSBCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHH
T ss_pred             CCCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHH
Confidence            445432 23445789999999999999999999997  8999999653  33334444221   11233332211 121 


Q ss_pred             ---------ccccCCCCEEEEcCCCCCCCC---Cc---chhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263           91 ---------GQALEDSDVVIIPAGVPRKPG---MT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        91 ---------~~a~~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                               .+.+...|++|..||......   .+   ....+..|+    .+.+..++.+.+... +.+++++.
T Consensus        80 ~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-g~Ii~~ss  153 (297)
T d1yxma1          80 EVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHG-GSIVNIIV  153 (297)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC-EEEEEECC
T ss_pred             HHHHHHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccc-cccccccc
Confidence                     123468999999998653221   11   222344453    345666666665544 44455543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.52  E-value=0.0081  Score=50.46  Aligned_cols=115  Identities=25%  Similarity=0.258  Sum_probs=62.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEec----CCccccccCCCCEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMG----NDQLGQALEDSDVVI  101 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~----t~d~~~a~~~aDiVI  101 (300)
                      .+++.|+||++-+|..++..|++.|.  +|++.|+++.+.+  ..++......+.+.....    -....+.+...|++|
T Consensus         5 gK~~lITGas~GIG~aia~~l~~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilV   82 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEE
Confidence            34788999988999999999999997  8999998653211  111111000000000000    001123356799999


Q ss_pred             EcCCCCCCCC---Ccc---hhhhhhhHH----HHHHHHHHHHhhCCCeEEEEec
Q 022263          102 IPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       102 i~ag~~~~~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ..||......   .+.   ...+..|+.    +.+...+.+.+. ..+.+++.+
T Consensus        83 nnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~~~i~~~s  135 (242)
T d1ulsa_          83 HYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREK-NPGSIVLTA  135 (242)
T ss_dssp             ECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCEEEEEEC
T ss_pred             ECCcccccCchhhCcchhhhccccccchhhhhhhhhcccccccc-ccceeeeec
Confidence            9999754221   121   223444543    445556655544 345555443

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.041  Score=42.22  Aligned_cols=99  Identities=10%  Similarity=0.057  Sum_probs=60.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEecC-Cc---c-ccccCCCCEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN-DQ---L-GQALEDSDVVI  101 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t-~d---~-~~a~~~aDiVI  101 (300)
                      .+|.|+|. |.+|..++..|...+.  +++++|.++.+  ....++...    .+..+.|. +|   + +..+++||.||
T Consensus         4 nHiII~G~-g~~g~~l~~~L~~~~~--~v~vId~d~~~~~~~~~~~~~~----~~~vi~Gd~~d~~~L~~a~i~~a~~vi   76 (153)
T d1id1a_           4 DHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGD----NADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCT----TCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCC--CEEEEeccchhHHHHHHHhhcC----CcEEEEccCcchHHHHHhccccCCEEE
Confidence            47999996 9999999999999887  89999987632  222222221    12222221 12   1 23468899999


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEE-ecCCCc
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPVN  149 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv-~tNP~d  149 (300)
                      ++.+.         |  ..|..    ++..+++.+|+..++. +.+|-+
T Consensus        77 ~~~~~---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~  110 (153)
T d1id1a_          77 ALSDN---------D--ADNAF----VVLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             ECSSC---------H--HHHHH----HHHHHHHHTSSSCEEEECSSGGG
T ss_pred             Ecccc---------H--HHHHH----HHHHHHHhCCCCceEEEEcCHHH
Confidence            98531         1  33443    3455667788765444 455655

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=95.51  E-value=0.0078  Score=53.40  Aligned_cols=93  Identities=16%  Similarity=0.240  Sum_probs=59.1

Q ss_pred             hhhhhhhhccccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHh-CCCCCEEEEEecCCcc--cHHHHhccccCCCcE
Q 022263            5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANTP--GVAADVGHINTRSEV   81 (300)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~-~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v   81 (300)
                      .|-.++|-|--+-.-+++..+ ....++|||+ |..+..-+..+.. .+ +++|.+||+++..  ..+.++... ....+
T Consensus       106 ~LTa~RTaA~salaa~~LA~~-da~~l~iiG~-G~QA~~~~~a~~~v~~-i~~V~v~~r~~~~~~~~~~~l~~~-~g~~v  181 (340)
T d1x7da_         106 IATALRTAATSLMAAQALARP-NARKMALIGN-GAQSEFQALAFHKHLG-IEEIVAYDTDPLATAKLIANLKEY-SGLTI  181 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCT-TCCEEEEECC-STTHHHHHHHHHHHSC-CCEEEEECSSHHHHHHHHHHHTTC-TTCEE
T ss_pred             hhhhhHHHHHHHHHHHHhhcc-CCceEEEEcc-cHHHHHHHHHHhhhcc-eeeeEEEecChHHHHHHHHhhhhc-cCCCc
Confidence            344555555555555566554 3458999995 9999766655543 44 5799999997642  334455432 12233


Q ss_pred             EEEecCCccccccCCCCEEEEcC
Q 022263           82 AGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        82 ~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      ..   ..+.++++++||+|+.+-
T Consensus       182 ~~---~~s~~eav~~ADIi~t~T  201 (340)
T d1x7da_         182 RR---ASSVAEAVKGVDIITTVT  201 (340)
T ss_dssp             EE---CSSHHHHHTTCSEEEECC
T ss_pred             ee---cCCHHHHHhcCCceeecc
Confidence            33   357889999999998753

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.13  Score=40.24  Aligned_cols=70  Identities=13%  Similarity=0.162  Sum_probs=45.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      ..+|.|+|| |-.+.++++.|...+.  +|.+++++..+++  +..+.+.   ..+....  .+ +....++|+||.+..
T Consensus        18 ~k~vlIlGa-GGaarai~~al~~~g~--~i~I~nRt~~ka~~l~~~~~~~---~~~~~~~--~~-~~~~~~~dliIN~Tp   88 (170)
T d1nyta1          18 GLRILLIGA-GGASRGVLLPLLSLDC--AVTITNRTVSRAEELAKLFAHT---GSIQALS--MD-ELEGHEFDLIINATS   88 (170)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHTGGG---SSEEECC--SG-GGTTCCCSEEEECCS
T ss_pred             CCEEEEECC-cHHHHHHHHHhcccce--EEEeccchHHHHHHHHHHHhhc---ccccccc--cc-cccccccceeecccc
Confidence            458999996 9999999999999886  7999988654333  2222221   1333321  11 123578999998754


Q ss_pred             C
Q 022263          106 V  106 (300)
Q Consensus       106 ~  106 (300)
                      .
T Consensus        89 ~   89 (170)
T d1nyta1          89 S   89 (170)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.46  E-value=0.012  Score=46.86  Aligned_cols=70  Identities=13%  Similarity=0.214  Sum_probs=43.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEE-EEecCCcccHHHHhccc-cCCCcEEEEecCCcccccc--CCCCEEEEc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAADVGHI-NTRSEVAGYMGNDQLGQAL--EDSDVVIIP  103 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~-L~D~~~~~g~~~dl~~~-~~~~~v~~~~~t~d~~~a~--~~aDiVIi~  103 (300)
                      .+||+|||+ |.+|...+..+...+-+ +|+ ++|.++.++.  ++... ..+...+.+   +|+++.+  .+.|+|+++
T Consensus         1 kiki~iIG~-G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~--~~~~~~~~~~~~~~~---~~~~~ll~~~~iD~v~I~   73 (184)
T d1ydwa1           1 QIRIGVMGC-ADIARKVSRAIHLAPNA-TISGVASRSLEKAK--AFATANNYPESTKIH---GSYESLLEDPEIDALYVP   73 (184)
T ss_dssp             CEEEEEESC-CTTHHHHHHHHHHCTTE-EEEEEECSSHHHHH--HHHHHTTCCTTCEEE---SSHHHHHHCTTCCEEEEC
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHhCCCC-EEEEEEeCCccccc--cchhccccccceeec---CcHHHhhhccccceeeec
Confidence            379999995 99999988888765443 444 7787653322  22211 122233333   3565555  578999987


Q ss_pred             C
Q 022263          104 A  104 (300)
Q Consensus       104 a  104 (300)
                      .
T Consensus        74 t   74 (184)
T d1ydwa1          74 L   74 (184)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.46  E-value=0.075  Score=37.92  Aligned_cols=74  Identities=20%  Similarity=0.372  Sum_probs=51.4

Q ss_pred             CCCCCceEEEEcCCCChH-HHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEE
Q 022263           24 ESVPDRKVAVLGAAGGIG-QPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        24 ~~~~~~KI~IIGaaG~VG-~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      .-...+||-+||- |-+| +++|..|.+.|+  +|.-.|.... ....+|.+.    .+..+.+. + .+.++++|+||.
T Consensus         4 ~~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~--~VsGSD~~~~-~~~~~L~~~----Gi~v~~g~-~-~~~i~~~d~vV~   73 (96)
T d1p3da1           4 EMRRVQQIHFIGI-GGAGMSGIAEILLNEGY--QISGSDIADG-VVTQRLAQA----GAKIYIGH-A-EEHIEGASVVVV   73 (96)
T ss_dssp             CCTTCCEEEEETT-TSTTHHHHHHHHHHHTC--EEEEEESCCS-HHHHHHHHT----TCEEEESC-C-GGGGTTCSEEEE
T ss_pred             cchhCCEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEeCCCC-hhhhHHHHC----CCeEEECC-c-cccCCCCCEEEE
Confidence            3445679999995 8888 677999999998  9999998642 222344443    23333322 3 355899999999


Q ss_pred             cCCCC
Q 022263          103 PAGVP  107 (300)
Q Consensus       103 ~ag~~  107 (300)
                      +.+.+
T Consensus        74 S~AI~   78 (96)
T d1p3da1          74 SSAIK   78 (96)
T ss_dssp             CTTSC
T ss_pred             CCCcC
Confidence            98876

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.047  Score=45.86  Aligned_cols=113  Identities=15%  Similarity=0.220  Sum_probs=67.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEec-CCcc----------cccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQL----------GQAL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~a~   94 (300)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++.  +..+.++.....  .+..+.. -+|.          .+.+
T Consensus        11 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_          11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            34788999999999999999999997  8999998653  222333443211  2222211 1121          2335


Q ss_pred             CCCCEEEEcCCCCCCC--CCcch---hhhhhh----HHHHHHHHHHHHhhCCCeEEEEec
Q 022263           95 EDSDVVIIPAGVPRKP--GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~--g~~r~---dl~~~N----~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ...|++|..||.....  ..+..   ..+..|    ..+.+..++.+.+.. .+.+|+++
T Consensus        87 g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Ii~is  145 (255)
T d1fmca_          87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTIT  145 (255)
T ss_dssp             SSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc-cccccccc
Confidence            6899999999975322  12222   223334    345667777777765 44555554

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.079  Score=44.32  Aligned_cols=150  Identities=19%  Similarity=0.166  Sum_probs=83.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc----------ccccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ----------LGQAL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d----------~~~a~   94 (300)
                      .+.+.|+||++-+|.+++..|+..|.  +|++.|+++...  ...++.+.      ..+.. -+|          ..+.+
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~------~~~~~Dvs~~~~v~~~~~~~~~~~   77 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPGA------VFILCDVTQEDDVKTLVSETIRRF   77 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTTE------EEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCC------eEEEccCCCHHHHHHHHHHHHHhc
Confidence            34789999999999999999999997  899999865322  22222221      11110 011          12335


Q ss_pred             CCCCEEEEcCCCCCCCC----Ccc---hhhhhhh----HHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhC
Q 022263           95 EDSDVVIIPAGVPRKPG----MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g----~~r---~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~  163 (300)
                      ...|++|..||....++    .+.   .+.+..|    ..+.+...+.|++.  .+.+|+++....           ..+
T Consensus        78 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~Ii~isS~~~-----------~~~  144 (250)
T d1ydea1          78 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISSLVG-----------AIG  144 (250)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCHHH-----------HHC
T ss_pred             CCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC--CCCCcccccccc-----------ccc
Confidence            67999999999643322    121   1223334    45667777777764  366666653221           111


Q ss_pred             CCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       164 ~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                       .|..-.++.+.---..|.+.+|.+++  +..|++-.+
T Consensus       145 -~~~~~~Y~asKaal~~lt~~lA~e~a--~~gIrVN~I  179 (250)
T d1ydea1         145 -QAQAVPYVATKGAVTAMTKALALDES--PYGVRVNCI  179 (250)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             -ccCcchhHHHHhhHHHHHHHHHHHhc--ccCeEEEEE
Confidence             22222222221112346677888874  455554444

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.31  E-value=0.21  Score=38.50  Aligned_cols=97  Identities=16%  Similarity=0.085  Sum_probs=57.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccccCCCcEEEEec-CCccc---cc-----cCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMG-NDQLG---QA-----LEDS   97 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~-t~d~~---~a-----~~~a   97 (300)
                      .-+|.|+|+ |.+|...+..+...|.  +++.+|.++.+ ..+.++..   . ....+.. ..+..   +.     =.++
T Consensus        27 g~~vlV~G~-G~vG~~~~~~ak~~Ga--~vi~v~~~~~r~~~a~~~ga---~-~~~~~~~~~~~~~~~~~~~~~~~g~g~   99 (170)
T d1e3ja2          27 GTTVLVIGA-GPIGLVSVLAAKAYGA--FVVCTARSPRRLEVAKNCGA---D-VTLVVDPAKEEESSIIERIRSAIGDLP   99 (170)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTC---S-EEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred             CCEEEEEcc-cccchhhHhhHhhhcc--cccccchHHHHHHHHHHcCC---c-EEEeccccccccchhhhhhhcccccCC
Confidence            348999995 9999999888888885  89999986532 22333321   1 1111110 11111   11     1569


Q ss_pred             CEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus        98 DiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      |+||.++|.+               ..   +-..++-..|.+.+++++.|.+
T Consensus       100 D~vid~~g~~---------------~~---~~~a~~~~~~~G~iv~~G~~~~  133 (170)
T d1e3ja2         100 NVTIDCSGNE---------------KC---ITIGINITRTGGTLMLVGMGSQ  133 (170)
T ss_dssp             SEEEECSCCH---------------HH---HHHHHHHSCTTCEEEECSCCSS
T ss_pred             ceeeecCCCh---------------HH---HHHHHHHHhcCCceEEEecCCC
Confidence            9999998743               11   2222333458999998877654

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=95.25  E-value=0.021  Score=48.03  Aligned_cols=117  Identities=17%  Similarity=0.191  Sum_probs=67.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HHHhccccCCCcEEEEe----cCCccccccCCCCEEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGHINTRSEVAGYM----GNDQLGQALEDSDVVII  102 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~dl~~~~~~~~v~~~~----~t~d~~~a~~~aDiVIi  102 (300)
                      .+.+.|+||++-+|..++..|++.|.  .|++.|+++...+ +.++......+.+....    .-....+.+-..|++|.
T Consensus         5 GK~alITGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVn   82 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVN   82 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEE
Confidence            34789999999999999999999997  8999999753221 11121111111111000    00012234578999999


Q ss_pred             cCCCCCC-C--CCcc---hhhhhhh----HHHHHHHHHHHHhhCCCeEEEEecCC
Q 022263          103 PAGVPRK-P--GMTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus       103 ~ag~~~~-~--g~~r---~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                      .||.... +  ..+.   ...+.-|    ..+.+...+.|++. ..+.||+++..
T Consensus        83 nAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~G~Ii~isS~  136 (248)
T d2d1ya1          83 NAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV-GGGAIVNVASV  136 (248)
T ss_dssp             CCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCG
T ss_pred             eCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccc-ccccccccccc
Confidence            9987432 1  1121   1233344    34566777777654 35677777543

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=95.24  E-value=0.14  Score=42.69  Aligned_cols=114  Identities=18%  Similarity=0.173  Sum_probs=66.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhccccCCCcEEEEec--CCc----------ccccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMG--NDQ----------LGQAL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~--t~d----------~~~a~   94 (300)
                      ...|.|+||++-+|..+|..|+..|.  .+++++.+..+. ...++........+..+..  +.+          ..+.+
T Consensus         5 gK~vlITGgs~GIG~~~A~~la~~G~--~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           5 NKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            34789999988999999999999986  666665533222 2222222221112222211  111          12224


Q ss_pred             CCCCEEEEcCCCCCCCCCcchhhhhhhH----HHHHHHHHHHHhh--CCCeEEEEec
Q 022263           95 EDSDVVIIPAGVPRKPGMTRDDLFNINA----GIVKDLCSAIAKY--CPNAIVNMIS  145 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~dl~~~N~----~i~~~i~~~i~~~--~p~a~viv~t  145 (300)
                      ...|++|..||.....  .-...+..|+    ...+.+.+.+.+.  .+.+.+|+++
T Consensus        83 g~iDilvnnAG~~~~~--~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~is  137 (254)
T d1sbya1          83 KTVDILINGAGILDDH--QIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANIC  137 (254)
T ss_dssp             SCCCEEEECCCCCCTT--CHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred             CCCCEEEeCCCCCCHH--HHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEe
Confidence            6899999999965322  2233444454    4667777788654  3567777774

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.21  E-value=0.061  Score=45.24  Aligned_cols=114  Identities=14%  Similarity=0.111  Sum_probs=64.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEec-CCc----------ccccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQ----------LGQAL   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d----------~~~a~   94 (300)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++.  +..+.++.....  .+..+.. -++          ..+.+
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSMF   83 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHHh
Confidence            34789999999999999999999997  8999998653  222333333211  2222211 111          11223


Q ss_pred             C-CCCEEEEcCCCCCC-C--CCcc---hhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263           95 E-DSDVVIIPAGVPRK-P--GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        95 ~-~aDiVIi~ag~~~~-~--g~~r---~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      . ..|++|..||.... +  ..+.   ...+..|+    .+.+...+.+++.. .+.+|+++.
T Consensus        84 ~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS  145 (259)
T d1xq1a_          84 GGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSS  145 (259)
T ss_dssp             TTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC-
T ss_pred             CCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc-ccccccccc
Confidence            3 47999999987432 1  1222   22334444    45566666666654 455666653

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.20  E-value=0.01  Score=51.64  Aligned_cols=34  Identities=18%  Similarity=0.313  Sum_probs=30.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ++||+|||| |.-|.+.|..|++.|.  +|.++|.+.
T Consensus         2 ~KKI~IIGa-G~sGL~aA~~L~k~G~--~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGA-GFSGAVIGRQLAEKGH--QVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSS
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhCCC--CEEEEECCC
Confidence            569999996 9999999999999887  999999865

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.19  E-value=0.0097  Score=49.32  Aligned_cols=35  Identities=20%  Similarity=0.271  Sum_probs=30.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      |+||+|||| |..|.++|..|.+.|+. .+.++|..+
T Consensus         1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi~-~V~V~Er~~   35 (288)
T d3c96a1           1 PIDILIAGA-GIGGLSCALALHQAGIG-KVTLLESSS   35 (288)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEEESSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence            689999996 99999999999998843 788999853

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=95.19  E-value=0.072  Score=44.70  Aligned_cols=112  Identities=19%  Similarity=0.173  Sum_probs=67.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc----------cccc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ----------LGQA   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d----------~~~a   93 (300)
                      +.+.+.|+||++-+|..++..|+..|.  +|++.|+++.+.  ...++..     .+..+.. -+|          ..+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~   76 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGD-----AARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGG-----GEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----ceEEEEcccCCHHHHHHHHHHHHHH
Confidence            345789999999999999999999997  899999865321  2222221     1111111 011          1233


Q ss_pred             cCCCCEEEEcCCCCCCCC---Cc---chhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRKPG---MT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +...|++|..||......   .+   ..+.+..|+    -+.+.+.+.+++.. .+.||+++.
T Consensus        77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~-~G~II~isS  138 (254)
T d1hdca_          77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISS  138 (254)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcC-CCeeccccc
Confidence            568999999998753221   11   222344443    45566777766654 567777754

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.19  E-value=0.31  Score=36.93  Aligned_cols=114  Identities=11%  Similarity=0.025  Sum_probs=70.9

Q ss_pred             CceEEEEcCC---CChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           28 DRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaa---G~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +..|+||||+   +..|..++..|...|+  +|+++..+..  .   +.      ....+   .++.+.-...|+|++..
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~--~v~pVnP~~~--~---i~------G~~~~---~sl~dlp~~iD~v~i~v   82 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGY--DVYPVNPKYE--E---VL------GRKCY---PSVLDIPDKIEVVDLFV   82 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS--E---ET------TEECB---SSGGGCSSCCSEEEECS
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCC--EEEEECCccc--c---cC------CCccc---ccccccCccceEEEEEe
Confidence            4579999986   5789999999999888  8888865321  1   11      12222   23433335789988873


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-e-ehhHHHH
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-T-TLDVVRA  181 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t-~Lds~R~  181 (300)
                                      +.+.+.++.+++.+.+.+++++....-.+    -+.+..+..| +   +++|= | ..+..||
T Consensus        83 ----------------p~~~~~~~~~e~~~~g~k~v~~~~G~~~e----e~~~~a~~~g-i---~vig~~C~~v~~~rl  137 (139)
T d2d59a1          83 ----------------KPKLTMEYVEQAIKKGAKVVWFQYNTYNR----EASKKADEAG-L---IIVANRCMMREHERL  137 (139)
T ss_dssp             ----------------CHHHHHHHHHHHHHHTCSEEEECTTCCCH----HHHHHHHHTT-C---EEEESCCHHHHHHHH
T ss_pred             ----------------CHHHHHHHHHHHHHhCCCEEEEeccccCH----HHHHHHHHCC-C---EEEcCCcChhhhhhh
Confidence                            34566777777777777766543332222    3445556655 3   67775 6 4566554

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.16  E-value=0.052  Score=45.52  Aligned_cols=117  Identities=19%  Similarity=0.219  Sum_probs=67.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccC--CCcEEEEec----CCccccccCCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT--RSEVAGYMG----NDQLGQALEDSD   98 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~--~~~v~~~~~----t~d~~~a~~~aD   98 (300)
                      +.+.+.|+||++-+|..++..|+..|.  .|++.|+++.  +..+.++.....  .+.+.....    -....+.+..-|
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD   82 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLN   82 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            334778889989999999999999997  8999998653  222333322110  001100000    001123356889


Q ss_pred             EEEEcCCCCCCCC---Ccc---hhhhhhh----HHHHHHHHHHHHhhCCCeEEEEecCC
Q 022263           99 VVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus        99 iVIi~ag~~~~~g---~~r---~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                      ++|..||......   .+.   ...+.-|    ....+...+.|++.  .+.||+++..
T Consensus        83 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~G~Iv~isS~  139 (253)
T d1hxha_          83 VLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET--GGSIINMASV  139 (253)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--CEEEEEECCG
T ss_pred             eEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CCceecccch
Confidence            9999999753211   121   2233334    34567777777543  4777777643

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.14  E-value=0.0097  Score=49.02  Aligned_cols=33  Identities=30%  Similarity=0.572  Sum_probs=29.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +||+|||| |.-|.+.|+.|++.|+  ++.++|...
T Consensus         2 KkV~IIGa-G~aGL~aA~~La~~G~--~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGA-GVSGLAAAYKLKIHGL--NVTVFEAEG   34 (373)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTSC--EEEEECSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            48999996 9999999999999998  999999743

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=95.11  E-value=0.015  Score=48.01  Aligned_cols=72  Identities=14%  Similarity=0.033  Sum_probs=41.4

Q ss_pred             CCceEEEEcCCCChHH-HHHHHHHhCCCCCEEEEEecCCcccHHHHhccc-cCC-CcEEEEecCCccccccC--CCCEEE
Q 022263           27 PDRKVAVLGAAGGIGQ-PLALLMKLNPLVSRLALYDIANTPGVAADVGHI-NTR-SEVAGYMGNDQLGQALE--DSDVVI  101 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~-~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~-~~~-~~v~~~~~t~d~~~a~~--~aDiVI  101 (300)
                      ++.||+|||+ |.+|. +++..+...+-+.=+.++|+++.+..  .+.+. ..+ ..+..+   +|+++.++  +.|+|+
T Consensus        32 ~~iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~--~~~~~~~i~~~~~~~~---~d~~ell~~~~iD~V~  105 (221)
T d1h6da1          32 RRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAK--IVAAEYGVDPRKIYDY---SNFDKIAKDPKIDAVY  105 (221)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHH--HHHHHTTCCGGGEECS---SSGGGGGGCTTCCEEE
T ss_pred             CCEEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCHHHHH--HHHHhhcccccccccc---Cchhhhcccccceeee
Confidence            5679999995 99996 45555555443433448888654322  11111 111 123322   46666664  688998


Q ss_pred             EcC
Q 022263          102 IPA  104 (300)
Q Consensus       102 i~a  104 (300)
                      ++.
T Consensus       106 I~t  108 (221)
T d1h6da1         106 IIL  108 (221)
T ss_dssp             ECS
T ss_pred             ecc
Confidence            874

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=95.05  E-value=0.082  Score=44.25  Aligned_cols=155  Identities=14%  Similarity=0.116  Sum_probs=83.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHHHHhccccCCCcEEEEec-CCc----------ccccc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG-NDQ----------LGQAL   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-t~d----------~~~a~   94 (300)
                      +.+.|+||++-+|..+|..|++.|.  .|++.|+++.   +....++.... ...+..+.. -+|          ..+.+
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            3677889988999999999999997  8999998642   11222222211 112222110 011          12234


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---chhhhhhh----HHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCC
Q 022263           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g---~~---r~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~  164 (300)
                      -..|++|..||......   .+   -.+.+..|    ....+...+.+++.. .+.+|+++......           + 
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~-----------~-  148 (260)
T d1x1ta1          82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIASAHGLV-----------A-  148 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS-----------C-
T ss_pred             CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcC-CceEeeccccccee-----------c-
Confidence            67999999999753221   11   12233344    455677777777654 56676665433210           0 


Q ss_pred             CCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       165 ~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                      .|..-.++.+.---..|.+.+|.+++  +..|++-.+
T Consensus       149 ~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I  183 (260)
T d1x1ta1         149 SANKSAYVAAKHGVVGFTKVTALETA--GQGITANAI  183 (260)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             cCCcchhhhhhhhHHHhHHHHHHHhc--hhCcEEEEE
Confidence            11111111211112346677888874  566655544

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.05  E-value=0.085  Score=44.25  Aligned_cols=113  Identities=12%  Similarity=0.062  Sum_probs=65.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEec-CCc----------cccccC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQ----------LGQALE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d----------~~~a~~   95 (300)
                      +.+.|+||++-+|..++..|+..|.  .|++.|+++.  +....++.....  ....+.. -+|          ..+.+.
T Consensus         9 K~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~~   84 (259)
T d2ae2a_           9 CTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKGF--KVEASVCDLSSRSERQELMNTVANHFH   84 (259)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            4788999989999999999999997  8999998653  222233333211  2222111 011          112234


Q ss_pred             -CCCEEEEcCCCCCCCC---Cc---chhhhhhhHH----HHHHHHHHHHhhCCCeEEEEecC
Q 022263           96 -DSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        96 -~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                       ..|++|..||......   .+   ....+..|+.    +.+...+.+.+. ..+.+|+++.
T Consensus        85 ~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS  145 (259)
T d2ae2a_          85 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFISS  145 (259)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEECC
T ss_pred             CCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhh-cccccccccc
Confidence             4899999999754322   12   1223444543    445555555543 4566666653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.02  E-value=0.0087  Score=47.39  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=30.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +.||+|||| |..|...|..|.+.|+ +++.++|...
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~-~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGY-SDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTC-CCEEEEESSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCC-CeEEEEEecC
Confidence            469999996 9999999999999987 3589999854

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.98  E-value=0.094  Score=44.23  Aligned_cols=115  Identities=16%  Similarity=0.233  Sum_probs=68.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccC-CCcEEEEecC-Cc----------cccc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT-RSEVAGYMGN-DQ----------LGQA   93 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~-~~~v~~~~~t-~d----------~~~a   93 (300)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|+++.  +....++.+... ...+..+... +|          ..+.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            34788999999999999999999997  8999998653  223334443321 1123332211 11          1223


Q ss_pred             cCCCCEEEEcCCCCCCCC-------Cc---chhhhhhhH----HHHHHHHHHHHhhCCCeEEEEec
Q 022263           94 LEDSDVVIIPAGVPRKPG-------MT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g-------~~---r~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +...|++|..||......       ++   ....+.-|+    ...+...+.+++. +.++|++.|
T Consensus        83 ~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (272)
T d1xkqa_          83 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-KGEIVNVSS  147 (272)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             hCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc-CCccccccc
Confidence            457999999999753221       11   111233343    3556667777654 456665554

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.08  Score=44.03  Aligned_cols=151  Identities=18%  Similarity=0.251  Sum_probs=83.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc----------cccccC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ----------LGQALE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d----------~~~a~~   95 (300)
                      +.+.|+||++-+|.+++..|++.|.  .|++.|+++..  ..+.++..     ....+.. -+|          ..+.+.
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLGA-----NGKGLMLNVTDPASIESVLEKIRAEFG   77 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhCC-----CCcEEEEEecCHHHhhhhhhhhhcccC
Confidence            3677889999999999999999997  89999986532  22222321     1111110 011          123356


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---chhhhhhh----HHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCC
Q 022263           96 DSDVVIIPAGVPRKPG---MT---RDDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY  165 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~~---r~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~  165 (300)
                      ..|++|..||......   .+   -...+..|    ....+...+.+.+.. .+.||+++....           ..+ .
T Consensus        78 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~II~isS~~~-----------~~~-~  144 (243)
T d1q7ba_          78 EVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKR-HGRIITIGSVVG-----------TMG-N  144 (243)
T ss_dssp             SCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHH-----------HHC-C
T ss_pred             CcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcC-CCEeeeecchhh-----------cCC-C
Confidence            8999999998753322   11   11223334    346677777776654 567777753211           111 2


Q ss_pred             CCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       166 ~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                      |..-.++.+.---..|.+.+|.+++  +..|++-.+
T Consensus       145 ~~~~~Y~asKaal~~lt~~lA~ela--~~gIrVN~I  178 (243)
T d1q7ba_         145 GGQANYAAAKAGLIGFSKSLAREVA--SRGITVNVV  178 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhC--ccCeEEEEE
Confidence            2222222222222346677888874  555655544

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=94.81  E-value=0.022  Score=44.52  Aligned_cols=68  Identities=22%  Similarity=0.221  Sum_probs=39.7

Q ss_pred             CceEEEEcCCCChHHH-HHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccC-CCCEEEEcC
Q 022263           28 DRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~-~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~-~aDiVIi~a  104 (300)
                      .|||+|||+ |.+|.. ....+...+-+ +++++|.++....  .+.+.... . ..   .+|+++.++ +.|+|+++.
T Consensus         1 tirvgiiG~-G~~~~~~~~~~l~~~~~~-~~~~~d~~~~~~~--~~~~~~~~-~-~~---~~~~~~ll~~~iD~V~I~t   70 (167)
T d1xeaa1           1 SLKIAMIGL-GDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLG--TLATRYRV-S-AT---CTDYRDVLQYGVDAVMIHA   70 (167)
T ss_dssp             CEEEEEECC-CHHHHHTHHHHHTTSTTE-EEEEECSCHHHHH--HHHHHTTC-C-CC---CSSTTGGGGGCCSEEEECS
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHHhCCCc-EEEEEECCHHHHH--HHHHhccc-c-cc---cccHHHhcccccceecccc
Confidence            479999995 999965 45556554433 7889988653322  22211100 0 11   135555554 789999874

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.79  E-value=0.013  Score=47.03  Aligned_cols=34  Identities=21%  Similarity=0.121  Sum_probs=28.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~   63 (300)
                      |||+|||| |++|..+|..|...+.-.+|.+++..
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            89999996 99999999988875444589999864

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=94.76  E-value=0.13  Score=42.57  Aligned_cols=199  Identities=16%  Similarity=0.062  Sum_probs=106.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEecC-Cc----------cccc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN-DQ----------LGQA   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t-~d----------~~~a   93 (300)
                      +.+++.|+||++.+|..+|..|+..|.  +|++.+++..+  ....++..     .+..+... ++          ..+.
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dls~~~~i~~~~~~i~~~   76 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALEA-----EAIAVVADVSDPKAVEAVFAEALEE   76 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCCS-----SEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCC-----ceEEEEecCCCHHHHHHHHHHHHHH
Confidence            345788999999999999999999998  99999986531  11122221     12111110 11          1233


Q ss_pred             cCCCCEEEEcCCCCCC-C--CCc---chhhhhhhHHHHHHHHHHHHhhCC-CeEEEEecCCCcccHHHHHHHHHHhCCCC
Q 022263           94 LEDSDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~-~--g~~---r~dl~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~~~i~~~~~~~~~~~~  166 (300)
                      +..-|++|..||.... +  ..+   ..+.+.-|+.-...+.+....+.. ...+++.|.....-.+-            
T Consensus        77 ~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~~------------  144 (241)
T d2a4ka1          77 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFG------------  144 (241)
T ss_dssp             HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHHH------------
T ss_pred             hCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccccC------------
Confidence            5679999999886432 2  112   233456677666666666666643 44555555433221110            


Q ss_pred             CCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEEecCCCCceeeccCcCcCCCCCCHHHHHHHHHHHhchhhhhhhhcc
Q 022263          167 EKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKA  246 (300)
Q Consensus       167 ~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G~h~g~t~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~~~  246 (300)
                       ...++.+.---..|.+.+|++++-.-=.|+++.-|.- . |  |...      .++++.++++.+++        .+  
T Consensus       145 -~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v-~-T--~~~~------~~~~~~~~~~~~~~--------p~--  203 (241)
T d2a4ka1         145 -LAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLI-Q-T--PMTA------GLPPWAWEQEVGAS--------PL--  203 (241)
T ss_dssp             -HHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSB-C-C--GGGT------TSCHHHHHHHHHTS--------TT--
T ss_pred             -ccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcC-C-C--HHHH------hhhHhHHHHHHhCC--------CC--
Confidence             0112233222345788899998543333445555544 1 2  2111      24444444433321        11  


Q ss_pred             CCCCCccchHHHHHHHHHHHHcc
Q 022263          247 GKGSATLSMAYAGAIFADACLKG  269 (300)
Q Consensus       247 gkg~t~~~~A~a~~~~i~ai~~~  269 (300)
                          -.++...=+++.+..++.+
T Consensus       204 ----~r~~~p~dva~~v~fL~S~  222 (241)
T d2a4ka1         204 ----GRAGRPEEVAQAALFLLSE  222 (241)
T ss_dssp             ----CSCBCHHHHHHHHHHHHSG
T ss_pred             ----CCCcCHHHHHHHHHHHhcc
Confidence                1245566677777777764

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.098  Score=43.26  Aligned_cols=159  Identities=14%  Similarity=0.150  Sum_probs=81.4

Q ss_pred             CceEEEEcCCC--ChHHHHHHHHHhCCCCCEEEEEecCCc-ccHHHHhccccCCCcEEEEecCC---------ccccccC
Q 022263           28 DRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGND---------QLGQALE   95 (300)
Q Consensus        28 ~~KI~IIGaaG--~VG~~~a~~L~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~---------d~~~a~~   95 (300)
                      .+++.|+||+|  -+|.++|..|++.|.  +|++.|+++. ...+.++..............+.         +..+.+.
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   82 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhccc
Confidence            34899999866  588999999999997  8999998643 22222322221111111110010         1123346


Q ss_pred             CCCEEEEcCCCCCCCCC-------cchh----hhhhhHHHHHHHHHHHHhhC-CCeEEEEecCCCcccHHHHHHHHHHhC
Q 022263           96 DSDVVIIPAGVPRKPGM-------TRDD----LFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAG  163 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g~-------~r~d----l~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~~~i~~~~~~~~~  163 (300)
                      ..|++|..++.......       ...+    .+.-|......+.+.+..+- +...++++|.....           .+
T Consensus        83 ~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~-----------~~  151 (258)
T d1qsga_          83 KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE-----------RA  151 (258)
T ss_dssp             SEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT-----------SB
T ss_pred             ccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhc-----------cC
Confidence            67888888775322111       1111    12233344444455444443 34556665543221           01


Q ss_pred             CCCCCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEEe
Q 022263          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (300)
Q Consensus       164 ~~~~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~G  202 (300)
                       .|..-.++.+.---..+.+.+|.+++  ++.|++-.+-
T Consensus       152 -~~~~~~Y~~sKaal~~ltr~lA~el~--~~gIrVN~I~  187 (258)
T d1qsga_         152 -IPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAIS  187 (258)
T ss_dssp             -CTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred             -CCCcHHHHHHHHHHHHHHHHHHHHhC--ccCceeeccc
Confidence             22222222222123456788899985  6777766663

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.74  E-value=0.016  Score=50.32  Aligned_cols=38  Identities=24%  Similarity=0.375  Sum_probs=31.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT   65 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~   65 (300)
                      .++||+|||| |..|.++|..|+..+...++++++....
T Consensus         3 ~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           3 TIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            3568999996 9999999998888776669999998653

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.12  Score=43.39  Aligned_cols=114  Identities=15%  Similarity=0.202  Sum_probs=65.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEEEecC-Cc----------cccc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGN-DQ----------LGQA   93 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t-~d----------~~~a   93 (300)
                      +.+++.|+||++-+|.++|..|++.|.  +|++.|+++.  +....++..... .....+... ++          ..+.
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~--~Vil~~r~~~~l~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~   89 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGKL   89 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhhhhc-ccchhhhhhhhhHHHHHHHHHHHHHH
Confidence            345899999999999999999999997  8999999653  222222222211 112211111 11          1223


Q ss_pred             cCCCCEEEEcCCCCCCCC---Ccch---hhhhhh----HHHHHHHHHHHHhhCCCeEEEEec
Q 022263           94 LEDSDVVIIPAGVPRKPG---MTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~g---~~r~---dl~~~N----~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      +...|+++..||......   .+..   ..+..|    ..+.+.+.+.+++.  ++.+++++
T Consensus        90 ~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~--~G~ii~is  149 (269)
T d1xu9a_          90 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVS  149 (269)
T ss_dssp             HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEE
T ss_pred             hCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc--CCcceEec
Confidence            457899999888642211   1211   223333    34566677777643  45566664

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.67  E-value=0.14  Score=43.88  Aligned_cols=114  Identities=18%  Similarity=0.259  Sum_probs=66.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc-------ccHH----HHhccccCCCcEEEEe-cCCcc-----
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-------PGVA----ADVGHINTRSEVAGYM-GNDQL-----   90 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~-------~g~~----~dl~~~~~~~~v~~~~-~t~d~-----   90 (300)
                      .+.+.|+||++-+|..+|..|+..|.  .|++.|++..       ....    .++.....  ...... ...+.     
T Consensus         7 gKvalITGas~GIG~aiA~~la~~Ga--~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~~~~~~~v~   82 (302)
T d1gz6a_           7 GRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG--KAVANYDSVEAGEKLVK   82 (302)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC--EEEEECCCGGGHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchhhhhhhhHHHHHHHHHHHhhccc--ccccccchHHHHHHHHH
Confidence            34678889999999999999999997  8999998431       1111    12221111  111110 00111     


Q ss_pred             --ccccCCCCEEEEcCCCCCCCC---Cc---chhhhhhhH----HHHHHHHHHHHhhCCCeEEEEecC
Q 022263           91 --GQALEDSDVVIIPAGVPRKPG---MT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        91 --~~a~~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                        .+.+...|++|..||......   ++   ....+.-|+    ...+...+.|++.. .+.||+++.
T Consensus        83 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IV~isS  149 (302)
T d1gz6a_          83 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTAS  149 (302)
T ss_dssp             HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC-CcEEEEeCC
Confidence              133568999999999754221   11   122334443    46677777777664 566776653

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.64  E-value=0.02  Score=42.19  Aligned_cols=36  Identities=19%  Similarity=0.240  Sum_probs=31.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..|.+|+|||| |++|.-+|..|...|.  ++.+++..+
T Consensus        20 ~~p~~v~IiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   55 (117)
T d1ebda2          20 EVPKSLVVIGG-GYIGIELGTAYANFGT--KVTILEGAG   55 (117)
T ss_dssp             SCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             hcCCeEEEECC-Cccceeeeeeeccccc--EEEEEEecc
Confidence            35679999996 9999999999999887  999999843

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.61  E-value=0.022  Score=42.18  Aligned_cols=33  Identities=18%  Similarity=0.330  Sum_probs=29.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~   63 (300)
                      +.||+|||| |++|.-+|..|...+.  ++.|++..
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~   54 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGI--DSYIFARG   54 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccc--cceeeehh
Confidence            679999996 9999999999998776  99999984

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.027  Score=44.50  Aligned_cols=87  Identities=20%  Similarity=0.270  Sum_probs=58.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~~  108 (300)
                      ++++|+|- |.+|..+|..+...+.  .+..+|+++.++... ..+..   .+      ..+++++..+|++|.+.|...
T Consensus        25 k~v~V~Gy-G~iG~g~A~~~rg~G~--~V~v~e~dp~~al~A-~~dG~---~v------~~~~~a~~~adivvtaTGn~~   91 (163)
T d1li4a1          25 KVAVVAGY-GDVGKGCAQALRGFGA--RVIITEIDPINALQA-AMEGY---EV------TTMDEACQEGNIFVTTTGCID   91 (163)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH-HHTTC---EE------CCHHHHTTTCSEEEECSSCSC
T ss_pred             CEEEEecc-ccccHHHHHHHHhCCC--eeEeeecccchhHHh-hcCce---Ee------eehhhhhhhccEEEecCCCcc
Confidence            48999995 9999999999998887  999999987433211 11111   11      245689999999988866321


Q ss_pred             CCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus       109 ~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                              .      |-   .+.+.+..+.+++.+++
T Consensus        92 --------v------I~---~eh~~~MKdgaIL~N~G  111 (163)
T d1li4a1          92 --------I------IL---GRHFEQMKDDAIVCNIG  111 (163)
T ss_dssp             --------S------BC---HHHHTTCCTTEEEEECS
T ss_pred             --------c------hh---HHHHHhccCCeEEEEec
Confidence                    0      11   12344445688888875

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.50  E-value=0.041  Score=43.20  Aligned_cols=69  Identities=17%  Similarity=0.295  Sum_probs=44.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      ..||.|+|+ |-++.++++.|.+.+. .+|.+++++..+++  .|.+..   .....   .+  ....++|+||.+-...
T Consensus        17 ~~~vlIlGa-GGaarai~~aL~~~g~-~~I~I~nR~~~ka~--~L~~~~---~~~~~---~~--~~~~~~DliINaTpiG   84 (167)
T d1npya1          17 NAKVIVHGS-GGMAKAVVAAFKNSGF-EKLKIYARNVKTGQ--YLAALY---GYAYI---NS--LENQQADILVNVTSIG   84 (167)
T ss_dssp             TSCEEEECS-STTHHHHHHHHHHTTC-CCEEEECSCHHHHH--HHHHHH---TCEEE---SC--CTTCCCSEEEECSSTT
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCC-CEEEEecccHHHHH--HHHHhh---hhhhh---hc--ccccchhhheeccccC
Confidence            358999995 9999999999998874 57999988654433  232221   11111   11  1246799999875443


Q ss_pred             C
Q 022263          108 R  108 (300)
Q Consensus       108 ~  108 (300)
                      .
T Consensus        85 m   85 (167)
T d1npya1          85 M   85 (167)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=94.44  E-value=0.2  Score=42.15  Aligned_cols=109  Identities=24%  Similarity=0.310  Sum_probs=64.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc--cHHHHhccccCCCcEEEEec-CCc----------cccccC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-NDQ----------LGQALE   95 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-t~d----------~~~a~~   95 (300)
                      +.+.|+||++-+|..++..|+..|.  +|++.|+++.+  ....++..     .+..+.. -++          ..+.+.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~-----~~~~~~~Dv~~~~~~~~~~~~~~~~~g   78 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAEGA--KVAVLDKSAERLAELETDHGD-----NVLGIVGDVRSLEDQKQAASRCVARFG   78 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCC-----CeeEEecccccHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999997  89999986432  11222221     1111110 011          123356


Q ss_pred             CCCEEEEcCCCCCCCC-------Cc----chhhhhhh----HHHHHHHHHHHHhhCCCeEEEEec
Q 022263           96 DSDVVIIPAGVPRKPG-------MT----RDDLFNIN----AGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g-------~~----r~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ..|++|..||......       +.    ....+.-|    ....+...+.+++.. ..++++.|
T Consensus        79 ~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S  142 (276)
T d1bdba_          79 KIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTIS  142 (276)
T ss_dssp             CCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECC
T ss_pred             CcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeee
Confidence            8999999998642211       11    11223333    345677777776653 44544443

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.023  Score=41.85  Aligned_cols=35  Identities=29%  Similarity=0.393  Sum_probs=30.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      -|.||+|||| |++|.-+|..|...|.  ++.+++..+
T Consensus        20 ~p~~vvIiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   54 (116)
T d1gesa2          20 LPERVAVVGA-GYIGVELGGVINGLGA--KTHLFEMFD   54 (116)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCEEEEECC-ChhhHHHHHHhhcccc--EEEEEeecc
Confidence            3569999996 9999999999999887  999999853

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=94.39  E-value=0.056  Score=43.83  Aligned_cols=104  Identities=16%  Similarity=0.242  Sum_probs=59.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCC-EEEEEecCCcccHHHHhccccCCCcEEEE---------------------ec
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVS-RLALYDIANTPGVAADVGHINTRSEVAGY---------------------MG   86 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~-el~L~D~~~~~g~~~dl~~~~~~~~v~~~---------------------~~   86 (300)
                      +||.|||. |.-|+.++..|...++.+ +.+.+|.+.   +  +|.+.....++..-                     ..
T Consensus         1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~iainTD~---~--~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~   74 (194)
T d1w5fa1           1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVAVNTDL---Q--VLEASNADVKIQIGENITRGLGAGGRPEIGEQAALES   74 (194)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEEEESCH---H--HHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHT
T ss_pred             CeEEEEEe-CchHHHHHHHHHHcCCCceEEEEEcCCH---H--HHhcCCcceEEecccccCCCcccccCchhhHhHHHHH
Confidence            68999995 999999999888776542 777777642   2  22222211111110                     00


Q ss_pred             CCccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263           87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus        87 t~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      .....+.++++|+||++||.....|       ..=.+++.++++..   . --.+-++|=|-.
T Consensus        75 ~~~I~~~l~~~d~vfi~AGlGGgTG-------tgaapviA~~ake~---g-~lvv~ivtlPF~  126 (194)
T d1w5fa1          75 EEKIREVLQDTHMVFITAGFGGGTG-------TGASPVIAKIAKEM---G-ILTVAIVTTPFY  126 (194)
T ss_dssp             HHHHHHHTTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHT---T-CEEEEEEEECCG
T ss_pred             HHHHHHHhcCCCeEEEEEecCCCcc-------cchHHHHHHHHHHc---C-CceEEEEeechh
Confidence            0134566889999999988763322       22345555555542   2 223444566765

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.39  E-value=0.029  Score=41.80  Aligned_cols=34  Identities=21%  Similarity=0.390  Sum_probs=30.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..+|+|||| |++|.-+|..|...+.  ++.|++..+
T Consensus        30 ~~~vvIIGg-G~iG~E~A~~l~~~g~--~Vtli~~~~   63 (121)
T d1d7ya2          30 QSRLLIVGG-GVIGLELAATARTAGV--HVSLVETQP   63 (121)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCeEEEECc-chhHHHHHHHhhcccc--eEEEEeecc
Confidence            358999996 9999999999999887  999999854

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.023  Score=47.23  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=30.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +..||+|||| |.-|.+.|..|.+.|+  +|.+++...
T Consensus         4 ~~~kViVIGa-G~aGL~aA~~L~~~G~--~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGS-GVSGLAAARQLQSFGM--DVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECC-BHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            4568999996 9999999999999998  899998743

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.26  E-value=0.14  Score=42.93  Aligned_cols=115  Identities=18%  Similarity=0.149  Sum_probs=64.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc---cHHHHhccccCCCcEEEEec-CCc----------ccc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMG-NDQ----------LGQ   92 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~-t~d----------~~~   92 (300)
                      +.+++.|+||++-+|..++..|+..|.  +|++.|.+..+   ..+.++.....  .+..+.. .+|          ..+
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~   92 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVK   92 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHH
Confidence            345889999999999999999999998  89999986421   22222332211  1222111 111          123


Q ss_pred             ccCCCCEEEEcCCCCCCCC---Cc---chhhhhhhHHHHHHHHHHHHhhC-CCeEEEEec
Q 022263           93 ALEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (300)
Q Consensus        93 a~~~aDiVIi~ag~~~~~g---~~---r~dl~~~N~~i~~~i~~~i~~~~-p~a~viv~t  145 (300)
                      .+...|++|..+|......   .+   ..+.+..|+.-...+.+.+..+- .++.+++++
T Consensus        93 ~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          93 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             HhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence            4568899999998653221   11   22334445444444444444432 344455554

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.23  E-value=0.036  Score=41.26  Aligned_cols=35  Identities=26%  Similarity=0.326  Sum_probs=30.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +..+|+|||| |++|.-+|..|...+.  ++.+++..+
T Consensus        29 ~~k~vvViGg-G~iG~E~A~~l~~~g~--~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGS-GYIGIEAAEAFAKAGK--KVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHhhccce--EEEEEEecC
Confidence            3458999996 9999999999999887  999998853

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=94.22  E-value=0.11  Score=43.14  Aligned_cols=113  Identities=18%  Similarity=0.193  Sum_probs=66.3

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCC-----CEEEEEecCCc--ccHHHHhccccCCCcEEEEec-CCc----------ccc
Q 022263           31 VAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQ----------LGQ   92 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~~~-----~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d----------~~~   92 (300)
                      |.|+||++-+|..++..|++.|.-     ..++++|+++.  +....++.....  .+..+.. -+|          ..+
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~   81 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA--LTDTITADISDMADVRRLTTHIVE   81 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC--EEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHH
Confidence            468899899999999999987741     24889988653  223334443211  2222111 111          123


Q ss_pred             ccCCCCEEEEcCCCCCCCC---Cc---chhhhhhh----HHHHHHHHHHHHhhCCCeEEEEecC
Q 022263           93 ALEDSDVVIIPAGVPRKPG---MT---RDDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus        93 a~~~aDiVIi~ag~~~~~g---~~---r~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      .+...|++|..||......   .+   ....+..|    ..+.+...+.|++. ..+.+|+++.
T Consensus        82 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Ii~isS  144 (240)
T d2bd0a1          82 RYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITS  144 (240)
T ss_dssp             HTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             HcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhc-CCCceEEEec
Confidence            3568999999998753221   11   12233444    35667777777765 4566777654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.14  E-value=0.038  Score=41.08  Aligned_cols=35  Identities=11%  Similarity=0.292  Sum_probs=30.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .|.|++|||| |.+|.-+|..|...|.  ++.+++..+
T Consensus        22 ~p~~~vIiG~-G~ig~E~A~~l~~lG~--~Vtii~~~~   56 (122)
T d1v59a2          22 IPKRLTIIGG-GIIGLEMGSVYSRLGS--KVTVVEFQP   56 (122)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCeEEEECC-CchHHHHHHHHHhhCc--ceeEEEecc
Confidence            4579999996 9999999999999887  999999853

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.13  E-value=0.014  Score=49.26  Aligned_cols=32  Identities=25%  Similarity=0.391  Sum_probs=29.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ||+|||| |.+|.++|..|.+.|+  ++.++|...
T Consensus         4 ~V~IvGa-Gp~Gl~~A~~L~~~G~--~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGA-GPSGLLLGQLLHKAGI--DNVILERQT   35 (292)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            7999996 9999999999999998  899999754

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.09  E-value=0.16  Score=42.15  Aligned_cols=152  Identities=20%  Similarity=0.240  Sum_probs=84.0

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHHHHhccccCCCcEEEEec-CCc----------cccccCC
Q 022263           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG-NDQ----------LGQALED   96 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-t~d----------~~~a~~~   96 (300)
                      |.|+||++-+|..++..|+..|.  .|++.|.+..   +....++....  .++..+.. -+|          ..+.+..
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            57889999999999999999997  8888877542   11222232211  12222211 011          1233568


Q ss_pred             CCEEEEcCCCCCCCC---Cc---chhhhhhh----HHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCC
Q 022263           97 SDVVIIPAGVPRKPG---MT---RDDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (300)
Q Consensus        97 aDiVIi~ag~~~~~g---~~---r~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~  166 (300)
                      .|++|..||......   .+   ....+..|    ....+..++.|.+. ..+.||+++.-..           ..+ .|
T Consensus        80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~~~-----------~~~-~~  146 (244)
T d1edoa_          80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIASVVG-----------LIG-NI  146 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHH-----------HHC-CT
T ss_pred             CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc-CCcEEEEEcChhh-----------cCC-CC
Confidence            999999998753221   11   12233334    44667777777665 4677777764222           111 33


Q ss_pred             CCcEEEeeehhHHHHHHHHHHHcCCCCCceEEEEE
Q 022263          167 EKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (300)
Q Consensus       167 ~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~v~  201 (300)
                      ..-.++.+.---..|.+.+|.+++  +..|++-.+
T Consensus       147 ~~~~Y~asKaal~~ltk~lA~el~--~~gIrvN~I  179 (244)
T d1edoa_         147 GQANYAAAKAGVIGFSKTAAREGA--SRNINVNVV  179 (244)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEE
T ss_pred             CCHHHHHHHHHHHHChHHHHHHHh--hhCcEEEEE
Confidence            322233332223456777888874  556665554

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.06  E-value=0.018  Score=47.97  Aligned_cols=32  Identities=25%  Similarity=0.456  Sum_probs=28.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      -|.|||| |-+|.++|+.|++.|.  +|+++|..+
T Consensus         6 DvvIIGa-Gi~Gls~A~~La~~G~--~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGG-GIIGSAIAYYLAKENK--NTALFESGT   37 (276)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            3999996 9999999999999997  899999754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.05  E-value=0.035  Score=45.60  Aligned_cols=36  Identities=25%  Similarity=0.301  Sum_probs=31.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ....||+|||| |..|.+.|..|.+.++  ++.++|...
T Consensus        47 ~~~k~VvIIGa-GpAGl~aA~~l~~~G~--~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGA-GPSGSEAARVLMESGY--TVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             cCCceEEEEcc-cHHHHHHHHHHHHhcc--ceeeEeecc
Confidence            35579999996 9999999999999998  999999854

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.00  E-value=0.16  Score=42.38  Aligned_cols=113  Identities=16%  Similarity=0.238  Sum_probs=64.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccC-CCcEEEEecC-Cc----------cccccC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT-RSEVAGYMGN-DQ----------LGQALE   95 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~-~~~v~~~~~t-~d----------~~~a~~   95 (300)
                      .+.|+||++-+|..++..|+..|.  +|++.|+++.  +..+.++..... ...+..+... +|          ..+.+.
T Consensus         7 valVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   84 (264)
T d1spxa_           7 VAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFG   84 (264)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             EEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            567789999999999999999997  8999998653  223344443321 1223332211 11          112345


Q ss_pred             CCCEEEEcCCCCCCCC-------Ccc---hhhhhhhH----HHHHHHHHHHHhhCCCeEEEEec
Q 022263           96 DSDVVIIPAGVPRKPG-------MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        96 ~aDiVIi~ag~~~~~g-------~~r---~dl~~~N~----~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                      ..|++|..||......       ++.   ...+..|+    ...+...+.+++. ..++|++.|
T Consensus        85 ~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (264)
T d1spxa_          85 KLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST-KGEIVNISS  147 (264)
T ss_dssp             CCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             CCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc-cCcceeeee
Confidence            7999999998642111       111   12333343    4557777777654 355555544

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.23  Score=38.36  Aligned_cols=96  Identities=20%  Similarity=0.200  Sum_probs=56.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhccccCCCcEEEEecCCcccccc--------CCCCE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQAL--------EDSDV   99 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~t~d~~~a~--------~~aDi   99 (300)
                      -+|.|+|+ |.+|...+..+...+. ..|+..|.++.+- .+.++-   .. .+... .+.+..+..        .++|+
T Consensus        28 d~VlI~G~-G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~~G---a~-~~~~~-~~~~~~~~~~~~~~~~g~g~Dv  100 (171)
T d1pl8a2          28 HKVLVCGA-GPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEIG---AD-LVLQI-SKESPQEIARKVEGQLGCKPEV  100 (171)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTT---CS-EEEEC-SSCCHHHHHHHHHHHHTSCCSE
T ss_pred             CEEEEECC-CccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHHhC---Cc-ccccc-cccccccccccccccCCCCceE
Confidence            48999996 9999998888877774 5799999865321 222221   11 12111 122222211        47899


Q ss_pred             EEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus       100 VIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      ||-+.|.+               ..+...   +.-..|.+.+++++.|.+
T Consensus       101 vid~~G~~---------------~~~~~a---~~~~~~gG~iv~~G~~~~  132 (171)
T d1pl8a2         101 TIECTGAE---------------ASIQAG---IYATRSGGTLVLVGLGSE  132 (171)
T ss_dssp             EEECSCCH---------------HHHHHH---HHHSCTTCEEEECSCCCS
T ss_pred             EEeccCCc---------------hhHHHH---HHHhcCCCEEEEEecCCC
Confidence            99998742               122222   222347888888876543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.87  E-value=0.032  Score=41.57  Aligned_cols=37  Identities=16%  Similarity=0.015  Sum_probs=31.0

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ...|.+++|||| |.+|.-+|..|...|.  ++.++..++
T Consensus        17 ~~~P~~vvIIGg-G~iG~E~A~~l~~lG~--~Vtii~~~~   53 (122)
T d1h6va2          17 PYCPGKTLVVGA-SYVALECAGFLAGIGL--DVTVMVRSI   53 (122)
T ss_dssp             SSCCCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             ccCCCeEEEECC-CccHHHHHHHHhhcCC--eEEEEEech
Confidence            335678999996 9999999999999886  899998653

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=93.82  E-value=0.04  Score=43.10  Aligned_cols=36  Identities=25%  Similarity=0.461  Sum_probs=24.2

Q ss_pred             CCceEEEEcCCCChHHHH-HHHHHhCCCCCEEEEE-ecCC
Q 022263           27 PDRKVAVLGAAGGIGQPL-ALLMKLNPLVSRLALY-DIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~-a~~L~~~~~~~el~L~-D~~~   64 (300)
                      +++||+||| +|.+|..+ ...|...+.+ ||+.+ |++.
T Consensus         3 kkirvaIIG-aG~ig~~~~~~~l~~~~~~-el~avas~~~   40 (157)
T d1nvmb1           3 QKLKVAIIG-SGNIGTDLMIKVLRNAKYL-EMGAMVGIDA   40 (157)
T ss_dssp             SCEEEEEEC-CSHHHHHHHHHHHHHCSSE-EEEEEECSCT
T ss_pred             CCcEEEEEc-CcHHHHHHHHHHHhhCCcc-eEEEEEecch
Confidence            458999999 59999864 4555555544 66554 6543

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.81  E-value=0.024  Score=39.17  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=29.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +++|+|+|+ |+.|+-++..-...|+  +++.+|.+.
T Consensus         1 ~k~vgIlG~-GQLgrMl~~Aa~~LG~--~v~vldp~~   34 (78)
T d3etja2           1 MKQVCVLGN-GQLGRMLRQAGEPLGI--AVWPVGLDA   34 (78)
T ss_dssp             CEEEEEEBC-SHHHHHHHHHHGGGTE--EEEEECTTS
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCC--EEEEEcCCC
Confidence            468999996 9999999988888788  999999854

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.80  E-value=0.026  Score=43.38  Aligned_cols=35  Identities=31%  Similarity=0.385  Sum_probs=29.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +||.|||| |++|..+|..|...+.-.+|+|+|.++
T Consensus         3 krivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            49999996 999999999988766434899999754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.75  E-value=0.034  Score=40.78  Aligned_cols=36  Identities=17%  Similarity=0.302  Sum_probs=31.0

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..|.|++|||| |++|.-+|..|...|.  ++.|++..+
T Consensus        19 ~~p~~vvIiGg-G~~G~E~A~~l~~~g~--~Vtlve~~~   54 (115)
T d1lvla2          19 ALPQHLVVVGG-GYIGLELGIAYRKLGA--QVSVVEARE   54 (115)
T ss_dssp             SCCSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHhhccc--ceEEEeeec
Confidence            34579999996 9999999999998887  999999843

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.71  E-value=0.11  Score=43.21  Aligned_cols=111  Identities=14%  Similarity=0.062  Sum_probs=64.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HHHhccccCCCcEEEEecCCc-------cccccCCCCEEE
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGHINTRSEVAGYMGNDQ-------LGQALEDSDVVI  101 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~t~d-------~~~a~~~aDiVI  101 (300)
                      ...|+||++-+|..+|..|++.|.  .|++.|++..... ...+........+..   ..+       ..+.+-..|++|
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~dv~~---~~~~~~~~~~~~~~~G~iDiLV   76 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYPQLKPMS---EQEPAELIEAVTSAYGQVDVLV   76 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCTTSEECC---CCSHHHHHHHHHHHHSCCCEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHhhhCcEEEeccCC---HHHHHHHHHHHHHHcCCCCEEE
Confidence            357999989999999999999997  8999998543211 111111111111111   112       123456899999


Q ss_pred             EcCCCCC--CCC--Ccchh---hhhhh----HHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          102 IPAGVPR--KPG--MTRDD---LFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       102 i~ag~~~--~~g--~~r~d---l~~~N----~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ..||...  ++=  .+..|   .+..|    ....+.+.+.+++.. .+.||+++.
T Consensus        77 nNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~IV~isS  131 (252)
T d1zmta1          77 SNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITS  131 (252)
T ss_dssp             EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             ECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc-cceeecccc
Confidence            9888542  221  12222   22233    456678888887765 455666653

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.65  E-value=0.062  Score=39.45  Aligned_cols=34  Identities=21%  Similarity=0.328  Sum_probs=30.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..||+|+|+ |+.|.-++......|+  +++.+|.++
T Consensus        11 ~~kigIlGg-GQL~rMla~aA~~lG~--~v~v~d~~~   44 (111)
T d1kjqa2          11 ATRVMLLGS-GELGKEVAIECQRLGV--EVIAVDRYA   44 (111)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHTTTC--EEEEEESST
T ss_pred             CCEEEEEeC-CHHHHHHHHHHHHCCC--EEEEEcCCC
Confidence            359999996 9999999998888888  999999865

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.64  E-value=0.02  Score=46.56  Aligned_cols=36  Identities=11%  Similarity=0.083  Sum_probs=29.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCC-----CEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~-----~el~L~D~~~   64 (300)
                      |.||+|||| |.-|.+.|+.|...|+.     -++.+||...
T Consensus         2 p~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           2 PYYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CcEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            579999995 99999999999887631     2799999864

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.61  E-value=0.044  Score=41.39  Aligned_cols=34  Identities=29%  Similarity=0.448  Sum_probs=30.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +.+|+|||| |++|.-+|..|...+.  ++.+++..+
T Consensus        35 ~k~v~VIGg-G~iG~E~A~~l~~~g~--~Vtvie~~~   68 (133)
T d1q1ra2          35 DNRLVVIGG-GYIGLEVAATAIKANM--HVTLLDTAA   68 (133)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhhCc--ceeeeeecc
Confidence            469999996 9999999999999887  999999853

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.59  E-value=0.027  Score=44.81  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=28.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ||+|||| |..|.+.|..|.+.|+ .+|+++|...
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~-~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGA-GMSGISAAKRLSEAGI-TDLLILEATD   34 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHHTTC-CCEEEECSSS
T ss_pred             CEEEECC-cHHHHHHHHHHHhCCC-CcEEEEECCC
Confidence            8999996 9999999999999885 2699998754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.56  E-value=0.022  Score=46.22  Aligned_cols=33  Identities=30%  Similarity=0.348  Sum_probs=27.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCC----CCEEEEEec
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPL----VSRLALYDI   62 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~----~~el~L~D~   62 (300)
                      |||+|||| |-+|.+.|+.|++.+.    +.++.+++.
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~e~~~i~~~   37 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSVLQPLDVKVYAD   37 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTTSSSCEEEEEES
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCceEEeeeeeccc
Confidence            79999996 9999999999998764    356777765

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.46  E-value=0.034  Score=45.28  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=28.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .||+|||| |..|.+.|..|...+.--+|.+||..+
T Consensus         2 ~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            49999996 999999999887653323999999864

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.13  Score=40.66  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=29.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~   62 (300)
                      ....+|+|||.+.-||..++..|.+.+-  .+.+++.
T Consensus        37 l~Gk~vvVIGrS~iVGrPLa~lL~~~ga--tVt~~~~   71 (170)
T d1a4ia1          37 IAGRHAVVVGRSKIVGAPMHDLLLWNNA--TVTTCHS   71 (170)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECT
T ss_pred             cccceEEEEecCCccchHHHHHHHhccC--ceEEEec
Confidence            3456999999877899999999999875  7888765

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.30  E-value=0.073  Score=39.22  Aligned_cols=36  Identities=22%  Similarity=0.276  Sum_probs=31.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..|.||+|||| |++|.-+|..|...|.  ++.++...+
T Consensus        20 ~~p~~i~IiG~-G~ig~E~A~~l~~~G~--~Vtiv~~~~   55 (119)
T d3lada2          20 NVPGKLGVIGA-GVIGLELGSVWARLGA--EVTVLEAMD   55 (119)
T ss_dssp             SCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             cCCCeEEEECC-ChHHHHHHHHHHHcCC--ceEEEEeec
Confidence            45679999996 9999999999999887  899998743

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=93.25  E-value=0.065  Score=42.50  Aligned_cols=77  Identities=19%  Similarity=0.224  Sum_probs=48.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHH----hccccCCCcEEEEecC--CccccccCCCCE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAAD----VGHINTRSEVAGYMGN--DQLGQALEDSDV   99 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~d----l~~~~~~~~v~~~~~t--~d~~~a~~~aDi   99 (300)
                      +..+|.|+|+ |-+|.++++.|...+. .+|+++++++... ...+    +... ....+....-.  .++.+.+.++|+
T Consensus        17 ~~k~vlIlGa-GGaarai~~al~~~g~-~~i~i~nR~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~di   93 (182)
T d1vi2a1          17 KGKTMVLLGA-GGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNEN-TDCVVTVTDLADQQAFAEALASADI   93 (182)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEECSSTTHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHhhcCC-ceEeeeccchHHHHHHHHHHHHHHhh-cCcceEeeecccccchhhhhcccce
Confidence            3359999995 9999999999998774 6899999965322 2222    2221 22223222111  123455789999


Q ss_pred             EEEcCCC
Q 022263          100 VIIPAGV  106 (300)
Q Consensus       100 VIi~ag~  106 (300)
                      ||.+...
T Consensus        94 iIN~Tp~  100 (182)
T d1vi2a1          94 LTNGTKV  100 (182)
T ss_dssp             EEECSST
T ss_pred             eccccCC
Confidence            9998544

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.06  Score=40.03  Aligned_cols=35  Identities=17%  Similarity=0.163  Sum_probs=30.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .|.+|+|||| |++|.-+|..|...+.  ++.+++..+
T Consensus        21 ~pk~vvIvGg-G~iG~E~A~~l~~~G~--~Vtlv~~~~   55 (125)
T d3grsa2          21 LPGRSVIVGA-GYIAVEMAGILSALGS--KTSLMIRHD   55 (125)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             cCCEEEEEcC-CccHHHHHHHHhcCCc--EEEEEeecc
Confidence            3569999996 9999999999999887  999999853

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.22  E-value=0.059  Score=43.10  Aligned_cols=73  Identities=15%  Similarity=0.163  Sum_probs=46.4

Q ss_pred             CCceEEEEcC-CCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHHHHhcccc--CCCcEEEEecCCccccccCCCCEE
Q 022263           27 PDRKVAVLGA-AGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVV  100 (300)
Q Consensus        27 ~~~KI~IIGa-aG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~~dl~~~~--~~~~v~~~~~t~d~~~a~~~aDiV  100 (300)
                      +..||+++|= ..+|..+++..+...|.  ++.++-....   .....++....  ....+..   ++|++++++++|+|
T Consensus         4 ~~lkia~vGD~~nnV~~Sli~~~~~~G~--~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~eai~~aDvV   78 (185)
T d1dxha2           4 HDISYAYLGDARNNMGNSLLLIGAKLGM--DVRIAAPKALWPHDEFVAQCKKFAEESGAKLTL---TEDPKEAVKGVDFV   78 (185)
T ss_dssp             GGCEEEEESCCSSHHHHHHHHHHHHTTC--EEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEE---ESCHHHHTTTCSEE
T ss_pred             CCCEEEEEcCCcchHHHHHHHHHHHcCC--EEEEEccHHHHhhhHHHHHHHHHhhccCCeEEE---EeChhhccccccEE
Confidence            4579999993 23688888888888887  8999976321   11111111111  1123443   46788999999998


Q ss_pred             EEcC
Q 022263          101 IIPA  104 (300)
Q Consensus       101 Ii~a  104 (300)
                      ....
T Consensus        79 yt~~   82 (185)
T d1dxha2          79 HTDV   82 (185)
T ss_dssp             EECC
T ss_pred             Eeeh
Confidence            7753

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.21  E-value=0.12  Score=42.24  Aligned_cols=34  Identities=21%  Similarity=0.421  Sum_probs=27.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCC-CEEEEEecC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLV-SRLALYDIA   63 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~-~el~L~D~~   63 (300)
                      .||.|||. |.-|..++..+...++- -+.+.+|.+
T Consensus        16 ~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD   50 (209)
T d2vapa1          16 AKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTD   50 (209)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESB
T ss_pred             CcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCC
Confidence            69999995 99999999988887753 377777774

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.19  E-value=0.52  Score=35.46  Aligned_cols=33  Identities=27%  Similarity=0.352  Sum_probs=24.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~   62 (300)
                      ||+|+||+|.||+.++..+...+-+.=+.-+|.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~   33 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDA   33 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            899999889999999887776553322334454

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.19  E-value=0.076  Score=41.49  Aligned_cols=73  Identities=12%  Similarity=0.079  Sum_probs=46.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhcccc---CCCcEEEEecCCccccccCCCCEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN---TRSEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~---~~~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      +..||+++|-..+|..+++..+..-|.  ++.++-....  .....+.....   ....+..   ++|..+++++||+|.
T Consensus         3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~--~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~ea~~~adviy   77 (163)
T d1pvva2           3 KGVKVVYVGDGNNVAHSLMIAGTKLGA--DVVVATPEGYEPDEKVIKWAEQNAAESGGSFEL---LHDPVKAVKDADVIY   77 (163)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHTTC--EEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEE---ESCHHHHTTTCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC--eEEEecccccCCChHHHHHHHHhhhcccceEEE---ecCHHHHhhhccEEe
Confidence            456999999755677788888887776  8999876431  11111111110   1123443   357789999999988


Q ss_pred             EcC
Q 022263          102 IPA  104 (300)
Q Consensus       102 i~a  104 (300)
                      .+-
T Consensus        78 ~~~   80 (163)
T d1pvva2          78 TDV   80 (163)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.15  E-value=0.23  Score=37.72  Aligned_cols=33  Identities=18%  Similarity=0.367  Sum_probs=28.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~   62 (300)
                      +.++|.|||| |.+|..-+..|+..|-  +|++++.
T Consensus        12 ~gkrvLViGg-G~va~~ka~~Ll~~GA--~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSP   44 (150)
T ss_dssp             TTCEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeC
Confidence            4469999997 9999999999998886  8999965

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.12  E-value=0.031  Score=44.51  Aligned_cols=80  Identities=24%  Similarity=0.325  Sum_probs=50.1

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc----ccHHHHhccccCCCcEEEEecCCccccccCCCCEE
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~----~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiV  100 (300)
                      ..+..+|+|||-+.-||..++.+|.+.+-  .+.++|.+..    +.....+.+.... .+..+. .+++++....||+|
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~ga--TVt~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~lk~~~~~aDIv  101 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGA--TVYSVDVNNIQKFTRGESLKLNKHHVE-DLGEYS-EDLLKKCSLDSDVV  101 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSC--EEEEECSSEEEEEESCCCSSCCCCEEE-EEEECC-HHHHHHHHHHCSEE
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCC--EEEEeccccccccccccceeeeeeccc-cccccc-hhHHhhccccCCEE
Confidence            44556999999866789999999999876  7888887421    1111122222110 111111 12356667799999


Q ss_pred             EEcCCCCC
Q 022263          101 IIPAGVPR  108 (300)
Q Consensus       101 Ii~ag~~~  108 (300)
                      |..+|.|.
T Consensus       102 IsavG~p~  109 (171)
T d1edza1         102 ITGVPSEN  109 (171)
T ss_dssp             EECCCCTT
T ss_pred             EEccCCCc
Confidence            99998764

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.11  E-value=0.032  Score=46.45  Aligned_cols=36  Identities=25%  Similarity=0.494  Sum_probs=31.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +..||+|+|+ |.+|++++..|+..|+ ++|+|+|-+.
T Consensus        29 ~~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   64 (247)
T d1jw9b_          29 KDSRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   64 (247)
T ss_dssp             HHCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             hCCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCcc
Confidence            3459999995 9999999999999985 6999999754

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=93.11  E-value=0.05  Score=43.04  Aligned_cols=70  Identities=13%  Similarity=0.142  Sum_probs=40.4

Q ss_pred             CCceEEEEcCCCChHHH-HHHHHHhCCCCCEEE-EEecCCcccHHHHhccccCCCcEEEEecCCccccccC--CCCEEEE
Q 022263           27 PDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVII  102 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~-~a~~L~~~~~~~el~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~--~aDiVIi  102 (300)
                      +++||+|||+ |.+|.. .+..+...+-.-+|+ ++|.++.+..  .+.+...  ....+   +|+++.++  +.|+|++
T Consensus         2 kkirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~--~~~~~~~--~~~~~---~~~~ell~~~~id~v~I   73 (181)
T d1zh8a1           2 RKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAE--EFAKMVG--NPAVF---DSYEELLESGLVDAVDL   73 (181)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHH--HHHHHHS--SCEEE---SCHHHHHHSSCCSEEEE
T ss_pred             CCcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhh--hhhcccc--cccee---eeeeccccccccceeec
Confidence            3579999995 999986 456666533221444 7887654322  2222111  11222   46666664  6899998


Q ss_pred             cC
Q 022263          103 PA  104 (300)
Q Consensus       103 ~a  104 (300)
                      +.
T Consensus        74 ~t   75 (181)
T d1zh8a1          74 TL   75 (181)
T ss_dssp             CC
T ss_pred             cc
Confidence            73

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.05  E-value=0.2  Score=41.26  Aligned_cols=100  Identities=19%  Similarity=0.251  Sum_probs=63.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc----c------cHHHHhccccCCCcEEEEecCCccccccCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----P------GVAADVGHINTRSEVAGYMGNDQLGQALED   96 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~----~------g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~   96 (300)
                      +..||.+.|| |..|..++..|...+. ++++++|.+-.    +      ....++.+.......     ..++.+++++
T Consensus        25 ~d~riv~~GA-GsAg~gia~~l~~~~~-~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~l~g   97 (222)
T d1vl6a1          25 EEVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARITNPERL-----SGDLETALEG   97 (222)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCC-----CSCHHHHHTT
T ss_pred             hhcEEEEECh-HHHHHHHHHHHHHhcc-cceEeecceeEEEcCcccccccHHHHHHHhhhcchhh-----hcchHhhccC
Confidence            3459999996 9999999988887653 68999998521    1      111122221111111     2356788999


Q ss_pred             CCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCccc
Q 022263           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST  151 (300)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~  151 (300)
                      +++++-+..    +|.-+.              +.|++.++..+|+=.|||....
T Consensus        98 ~~~~~g~~~----~~~~~~--------------e~m~~~~~rPIIFpLSNPt~~~  134 (222)
T d1vl6a1          98 ADFFIGVSR----GNILKP--------------EWIKKMSRKPVIFALANPVPEI  134 (222)
T ss_dssp             CSEEEECSC----SSCSCH--------------HHHTTSCSSCEEEECCSSSCSS
T ss_pred             cceeccccc----cccccH--------------HHHhhcCCCCEEEecCCCccch
Confidence            998766542    222111              2456678888998899997644

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=93.01  E-value=0.096  Score=41.30  Aligned_cols=56  Identities=21%  Similarity=0.406  Sum_probs=41.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      ...+|+|||-+.-||..++..|.+.+-  .+..++..                       |.++++.+++||+||.++|.
T Consensus        36 ~GK~v~VIGrS~~VG~Pla~lL~~~ga--tVt~~h~~-----------------------t~~l~~~~~~ADivI~a~G~   90 (166)
T d1b0aa1          36 FGLNAVVIGASNIVGRPMSMELLLAGC--TTTVTHRF-----------------------TKNLRHHVENADLLIVAVGK   90 (166)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTTC--EEEEECSS-----------------------CSCHHHHHHHCSEEEECSCC
T ss_pred             ccceEEEEeccccccHHHHHHHHHhhc--cccccccc-----------------------cchhHHHHhhhhHhhhhccC
Confidence            456999999877899999999998875  67666531                       22344556778888888775


Q ss_pred             C
Q 022263          107 P  107 (300)
Q Consensus       107 ~  107 (300)
                      |
T Consensus        91 p   91 (166)
T d1b0aa1          91 P   91 (166)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.98  E-value=0.05  Score=42.98  Aligned_cols=76  Identities=18%  Similarity=0.327  Sum_probs=48.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH--HHHhccccCC---CcEEEEecCCccccccCCCCEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTR---SEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~--~~dl~~~~~~---~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      +..+|.|+|+ |-++.++++.|...+   +|.+++++..+++  +.++......   ..+..    .++...+.++|++|
T Consensus        17 ~~k~vlIlGa-GG~arai~~aL~~~~---~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dliI   88 (177)
T d1nvta1          17 KDKNIVIYGA-GGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF----SGLDVDLDGVDIII   88 (177)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE----ECTTCCCTTCCEEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHcccc---ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhh----hhhhhccchhhhhc
Confidence            4458999995 999999988886543   8999988654333  3344332211   12222    24456678999999


Q ss_pred             EcCCCCCCC
Q 022263          102 IPAGVPRKP  110 (300)
Q Consensus       102 i~ag~~~~~  110 (300)
                      .+-..+..+
T Consensus        89 n~tp~g~~~   97 (177)
T d1nvta1          89 NATPIGMYP   97 (177)
T ss_dssp             ECSCTTCTT
T ss_pred             cCCcccccc
Confidence            986554333

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.87  E-value=0.036  Score=48.41  Aligned_cols=89  Identities=13%  Similarity=0.103  Sum_probs=54.6

Q ss_pred             hhhhhhhccccccccCCCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHHHHhccccCCCcEEE
Q 022263            6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAG   83 (300)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~   83 (300)
                      |-.++|-|-.+-.-+|+..+ ....++|||+ |..+...+..+...--+++|.++++++.  +..+.++.+...  .+..
T Consensus       104 lT~~RTaA~sala~~~la~~-~~~~l~iiGa-G~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~--~~~~  179 (320)
T d1omoa_         104 TTSLRTGAAGGIAAKYLARK-NSSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGI--SASV  179 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHSCT-TCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTC--CEEE
T ss_pred             cccccchhHHHHHHHHhccC-CccEEEEecC-cccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCC--cccc
Confidence            34445544444444555554 4458999995 9999777766654333679999998653  333344443321  2221


Q ss_pred             EecCCccccccCCCCEEEEc
Q 022263           84 YMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        84 ~~~t~d~~~a~~~aDiVIi~  103 (300)
                           +..+++.+||+|+.+
T Consensus       180 -----~~~~a~~~aDiV~ta  194 (320)
T d1omoa_         180 -----QPAEEASRCDVLVTT  194 (320)
T ss_dssp             -----CCHHHHTSSSEEEEC
T ss_pred             -----chhhhhccccEEEEe
Confidence                 235789999998765

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.80  E-value=0.035  Score=47.56  Aligned_cols=34  Identities=18%  Similarity=0.153  Sum_probs=30.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      |.+|.|||| |..|.++|..|++.|.  +|.++|.+.
T Consensus         1 M~dv~IIGa-G~sGl~~A~~L~~~g~--~V~iiEk~~   34 (298)
T d1i8ta1           1 MYDYIIVGS-GLFGAVCANELKKLNK--KVLVIEKRN   34 (298)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHGGGTC--CEEEECSSS
T ss_pred             CccEEEECC-cHHHHHHHHHHHhCCC--cEEEEECCC
Confidence            568999996 9999999999998887  899999854

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=92.75  E-value=0.084  Score=38.59  Aligned_cols=35  Identities=14%  Similarity=0.211  Sum_probs=30.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +..+|+|||+ |.+|.-+|..|...+.  ++.+++..+
T Consensus        21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~--~vt~i~~~~   55 (121)
T d1mo9a2          21 PGSTVVVVGG-SKTAVEYGCFFNATGR--RTVMLVRTE   55 (121)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcch--hheEeeccc
Confidence            3569999996 9999999999998776  899999853

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.73  E-value=0.29  Score=40.51  Aligned_cols=34  Identities=26%  Similarity=0.339  Sum_probs=27.2

Q ss_pred             eEEEE-cCCCChHHHHHHHHHh---CCCCCEEEEEecCCc
Q 022263           30 KVAVL-GAAGGIGQPLALLMKL---NPLVSRLALYDIANT   65 (300)
Q Consensus        30 KI~II-GaaG~VG~~~a~~L~~---~~~~~el~L~D~~~~   65 (300)
                      ||+|| ||++-+|..+|..|++   .|.  .|++.|+++.
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~--~Vv~~~r~~~   44 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSES   44 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCC--EEEEEECCHH
Confidence            66555 9888999999999985   455  8999998653

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.67  E-value=0.031  Score=48.29  Aligned_cols=107  Identities=23%  Similarity=0.338  Sum_probs=62.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHh----CCCC-----CEEEEEecCCc--ccHHHHhccccCC-CcEEEEecCCccccccC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKL----NPLV-----SRLALYDIANT--PGVAADVGHINTR-SEVAGYMGNDQLGQALE   95 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~----~~~~-----~el~L~D~~~~--~g~~~dl~~~~~~-~~v~~~~~t~d~~~a~~   95 (300)
                      ..||.|.|| |.-|..++..|..    .++.     +.++++|.+-.  ++..-++.....+ .+-.......+++++++
T Consensus        25 d~kiv~~GA-GsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~  103 (294)
T d1pj3a1          25 EHKILFLGA-GEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVN  103 (294)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHH
T ss_pred             HcEEEEECc-cHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHH
Confidence            348999996 9999888876543    3442     46999998531  1110011111000 00000001124666665


Q ss_pred             --CCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263           96 --DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus        96 --~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                        +.|++|-+.+.+   |.     +  +    +++.+.|.+.+++.+|+-.|||..
T Consensus       104 ~~kptvliG~S~~~---g~-----f--t----~evi~~Ma~~~~~PIIFaLSNPt~  145 (294)
T d1pj3a1         104 ILKPSTIIGVAGAG---RL-----F--T----PDVIRAMASINERPVIFALSNPTA  145 (294)
T ss_dssp             HHCCSEEEECCCSS---CC-----S--C----HHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             hcCCceEEEecCCC---Cc-----C--C----HHHHHHHHhcCCCcEEEEccCCCC
Confidence              788888876543   21     1  1    556677888999999999999964

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.40  E-value=0.067  Score=39.53  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=29.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+|+|||| |++|.-+|..|...+.  ++.|++..+
T Consensus        33 ~~vvIiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   65 (122)
T d1xhca2          33 GEAIIIGG-GFIGLELAGNLAEAGY--HVKLIHRGA   65 (122)
T ss_dssp             SEEEEEEC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CcEEEECC-cHHHHHHHHHhhcccc--eEEEEeccc
Confidence            58999996 9999999999999887  999999854

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.27  E-value=0.063  Score=42.85  Aligned_cols=75  Identities=20%  Similarity=0.184  Sum_probs=43.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhcccc---C--------CCcEEEEecCCccccccC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHIN---T--------RSEVAGYMGNDQLGQALE   95 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~~---~--------~~~v~~~~~t~d~~~a~~   95 (300)
                      |.||+|.| .|.+|..++..+.+++-++-+.+.|..+... ...-..+..   .        ...+..   ..++.+.+.
T Consensus         1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v---~g~~~~~~~   76 (178)
T d1b7go1           1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPV---AGTVEDLIK   76 (178)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCC---CCCHHHHHH
T ss_pred             CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceec---CCchhhhhh
Confidence            67999999 5999999999888876554444555543211 111001100   0        001111   224456678


Q ss_pred             CCCEEEEcCCC
Q 022263           96 DSDVVIIPAGV  106 (300)
Q Consensus        96 ~aDiVIi~ag~  106 (300)
                      ++|+||.+.|.
T Consensus        77 ~vDiViecTG~   87 (178)
T d1b7go1          77 TSDIVVDTTPN   87 (178)
T ss_dssp             HCSEEEECCST
T ss_pred             cCCEEEECCCC
Confidence            99999999764

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=92.13  E-value=0.38  Score=39.60  Aligned_cols=36  Identities=17%  Similarity=0.203  Sum_probs=30.5

Q ss_pred             CceEEEEcCCCC--hHHHHHHHHHhCCCCCEEEEEecCCc
Q 022263           28 DRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIANT   65 (300)
Q Consensus        28 ~~KI~IIGaaG~--VG~~~a~~L~~~~~~~el~L~D~~~~   65 (300)
                      .+++.|+||+|.  +|.++|..|+..|.  +|+|.+.++.
T Consensus         6 gK~~lItGaag~~GIG~aiA~~la~~Ga--~Vil~~~~~~   43 (268)
T d2h7ma1           6 GKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRL   43 (268)
T ss_dssp             TCEEEECCCSSTTCHHHHHHHHHHHTTC--EEEEEECSCH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHcCC--EEEEEeCChH
Confidence            348999997665  99999999999997  8999998764

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.78  E-value=0.057  Score=43.90  Aligned_cols=103  Identities=19%  Similarity=0.283  Sum_probs=61.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCC-EEEEEecCCcccHHHHhccccCCCcEE-------EE--------------ecC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVS-RLALYDIANTPGVAADVGHINTRSEVA-------GY--------------MGN   87 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~-el~L~D~~~~~g~~~dl~~~~~~~~v~-------~~--------------~~t   87 (300)
                      +|.|||- |--|..++..+...++.+ +++.+|.+.   +.+  .......++.       ..              ...
T Consensus         3 ~IkViGv-GGaG~n~vn~~~~~~~~~v~~iainTD~---~~L--~~~~~~~ki~iG~~~t~G~Gagg~p~~g~~aa~e~~   76 (198)
T d1rq2a1           3 VIKVVGI-GGGGVNAVNRMIEQGLKGVEFIAINTDA---QAL--LMSDADVKLDVGRDSTRGLGAGADPEVGRKAAEDAK   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESCH---HHH--HHCCCSEEEECCTTTC-----CCCHHHHHHHHHHTH
T ss_pred             eEEEEEe-CchHHHHHHHHHHcCCCCceEEEEcchH---HHH--hcCCcchhhccccccccCCCcCcChhhhHhhHHHHH
Confidence            6788995 999999999998887642 677776632   222  2211111111       00              001


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus        88 ~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      ....+.++++|+||++||.....|       ..=+|++.+++++..    --.+-++|-|-.
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGGgTG-------tGaaPviA~iake~g----~l~v~ivt~PF~  127 (198)
T d1rq2a1          77 DEIEELLRGADMVFVTAGEGGGTG-------TGGAPVVASIARKLG----ALTVGVVTRPFS  127 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHHT----CEEEEEEEECCG
T ss_pred             HHHHHHhcCCCEEEEEEecCCCCC-------cchHHHHHHHHHHcC----CcEEEEEecChH
Confidence            234567899999999999764433       233677777776652    123445676765

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.77  E-value=0.066  Score=41.66  Aligned_cols=73  Identities=18%  Similarity=0.180  Sum_probs=45.5

Q ss_pred             CCceEEEEcC-CCChHHHHHHHHHhCCCCCEEEEEecCCc--ccHH-HHhcccc--CCCcEEEEecCCccccccCCCCEE
Q 022263           27 PDRKVAVLGA-AGGIGQPLALLMKLNPLVSRLALYDIANT--PGVA-ADVGHIN--TRSEVAGYMGNDQLGQALEDSDVV  100 (300)
Q Consensus        27 ~~~KI~IIGa-aG~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~~-~dl~~~~--~~~~v~~~~~t~d~~~a~~~aDiV  100 (300)
                      +..||+++|= ..+|-.+++..+..-|.  ++.+.-....  .... .......  ....+..   ++|++++++++|+|
T Consensus         2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~--~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~---~~d~~~ai~~aDvi   76 (161)
T d1vlva2           2 KGVKVVFMGDTRNNVATSLMIACAKMGM--NFVACGPEELKPRSDVFKRCQEIVKETDGSVSF---TSNLEEALAGADVV   76 (161)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHTTC--EEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEE---ESCHHHHHTTCSEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEecchhhhhhhhHHHHHHHHHhhcCCceEE---EecHHHhhhhhhhe
Confidence            3469999993 24688888888888787  8888865321  1111 1111110  1123443   46888999999999


Q ss_pred             EEcC
Q 022263          101 IIPA  104 (300)
Q Consensus       101 Ii~a  104 (300)
                      ....
T Consensus        77 yt~~   80 (161)
T d1vlva2          77 YTDV   80 (161)
T ss_dssp             EECC
T ss_pred             eccc
Confidence            8864

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=91.76  E-value=0.064  Score=46.50  Aligned_cols=106  Identities=19%  Similarity=0.283  Sum_probs=59.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHh----CCCC-----CEEEEEecCCc-ccHHHHhccccCCCcEEEEecCCccccccCC-
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKL----NPLV-----SRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALED-   96 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~----~~~~-----~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~-   96 (300)
                      ..||.|.|| |.-|..++..|..    .|+-     +.++++|.+-. .....|+...... ..+......++.+.++. 
T Consensus        25 d~kivi~GA-GaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~~-~a~~~~~~~~l~~~i~~~  102 (308)
T d1o0sa1          25 QEKYLFFGA-GAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQ-FAKDMPETTSILEVIRAA  102 (308)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTT-TCBSSCCCCCHHHHHHHH
T ss_pred             HcEEEEECc-CHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHHH-HHHhcccCCcHHHHHhcc
Confidence            348999996 9999988776553    3442     36999998531 0000133222111 00100011234444443 


Q ss_pred             -CCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263           97 -SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus        97 -aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                       -+++|-+.+.+   |.     +  +    +++.+.|.+.+++.+|+-.|||..
T Consensus       103 kptvliG~s~~~---g~-----f--t----~evv~~Ma~~~~~PIIFaLSNPtp  142 (308)
T d1o0sa1         103 RPGALIGASTVR---GA-----F--N----EEVIRAMAEINERPIIFALSNPTS  142 (308)
T ss_dssp             CCSEEEECSSCT---TC-----S--C----HHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             ccccEEeccccc---CC-----C--C----HHHHHHHHhhCCCcEEEEccCCCC
Confidence             34666655443   31     1  2    445567888999999999999975

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=91.75  E-value=0.11  Score=40.83  Aligned_cols=65  Identities=23%  Similarity=0.223  Sum_probs=47.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      +++.|+|- |.+|..+|..+...+-  .+..+++++.++..- ..|.     .+.    ..++++++.+|++|.+-|.
T Consensus        24 k~vvV~GY-G~vGrG~A~~~rg~Ga--~V~V~E~DPi~alqA-~mdG-----f~v----~~~~~a~~~aDi~vTaTGn   88 (163)
T d1v8ba1          24 KIVVICGY-GDVGKGCASSMKGLGA--RVYITEIDPICAIQA-VMEG-----FNV----VTLDEIVDKGDFFITCTGN   88 (163)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHHH-HTTT-----CEE----CCHHHHTTTCSEEEECCSS
T ss_pred             CEEEEecc-cccchhHHHHHHhCCC--EEEEEecCchhhHHH-HhcC-----Ccc----CchhHccccCcEEEEcCCC
Confidence            48999997 9999999999998776  899999987543211 1221     111    2456899999999988664

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.74  E-value=0.076  Score=43.63  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      -||.|+||++-+|..++..|++.|.  +|++.|+++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~--~V~~~~~~~   36 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSA   36 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            4899999999999999999999997  899999964

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.73  E-value=0.28  Score=40.49  Aligned_cols=116  Identities=13%  Similarity=0.137  Sum_probs=62.3

Q ss_pred             CceEEEEcCCC--ChHHHHHHHHHhCCCCCEEEEEecCCc-ccHHHHhccccCCC-cEEEEecC--Cc-------ccccc
Q 022263           28 DRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRS-EVAGYMGN--DQ-------LGQAL   94 (300)
Q Consensus        28 ~~KI~IIGaaG--~VG~~~a~~L~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~-~v~~~~~t--~d-------~~~a~   94 (300)
                      .+++.|+||+|  -+|..++..|+..|.  +|++.|+++. ...+.++....... .+.. ..+  .+       ..+.+
T Consensus         8 gK~alITGas~~~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~v~~~~~~~~~~~   84 (256)
T d1ulua_           8 GKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGGALLFRA-DVTQDEELDALFAGVKEAF   84 (256)
T ss_dssp             TCEEEEESCCCSSSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCEEEEC-CTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHhhhccCccccccc-ccCCHHHHHHHHHHHHHhc
Confidence            34789999876  499999999999997  8999998643 22222222211111 1111 001  01       12335


Q ss_pred             CCCCEEEEcCCCCCCC-------CCcchh---hhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263           95 EDSDVVIIPAGVPRKP-------GMTRDD---LFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~-------g~~r~d---l~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (300)
                      ...|++|..||.....       ..+..+   .+.-|+.-...+++....+- ..+.+|+++.
T Consensus        85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS  147 (256)
T d1ulua_          85 GGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY  147 (256)
T ss_dssp             SSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred             CCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEee
Confidence            6789999999864211       112222   23445444444444443332 2566776653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=91.69  E-value=0.067  Score=45.11  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=28.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+|.|||| |-+|.++|+.|+..|. .+|+|+|.+.
T Consensus         2 ~dViIIGa-Gi~G~s~A~~La~~G~-~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGA-GIVGTNLADELVTRGW-NNITVLDQGP   35 (305)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTC-CCEEEECSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHcCC-CcEEEEeCCC
Confidence            37999996 9999999999998884 2699999753

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.66  E-value=0.072  Score=42.01  Aligned_cols=32  Identities=25%  Similarity=0.279  Sum_probs=28.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      -|.|||| |.-|.+.|..|++.|+  +|.++|...
T Consensus         7 DviViGa-G~~Gl~~A~~La~~G~--~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGT-GITECILSGLLSVDGK--KVLHIDKQD   38 (297)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEcCCC
Confidence            4899995 9999999999999998  899999864

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=91.62  E-value=0.26  Score=38.82  Aligned_cols=79  Identities=19%  Similarity=0.191  Sum_probs=44.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH-HHHhcccc----CCCcEE-----EEecCCccccccCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGHIN----TRSEVA-----GYMGNDQLGQALEDS   97 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~-~~dl~~~~----~~~~v~-----~~~~t~d~~~a~~~a   97 (300)
                      ++||+|.|- |.+|..++..+..++-++-+.+.|..+.... .+-..+..    ....+.     .+....++.+.++++
T Consensus         2 ~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (172)
T d2czca2           2 KVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKV   80 (172)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred             cEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccC
Confidence            369999995 9999999888887765544556666442111 11000000    000000     001122455667899


Q ss_pred             CEEEEcCCCC
Q 022263           98 DVVIIPAGVP  107 (300)
Q Consensus        98 DiVIi~ag~~  107 (300)
                      |+||-+.|..
T Consensus        81 DvViEcTG~f   90 (172)
T d2czca2          81 DIIVDATPGG   90 (172)
T ss_dssp             SEEEECCSTT
T ss_pred             CEEEECCCCC
Confidence            9999997753

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.61  E-value=0.08  Score=45.47  Aligned_cols=38  Identities=21%  Similarity=0.190  Sum_probs=32.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG   67 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g   67 (300)
                      +...|+|||| |..|..+|..|.+.++  +++++|....-|
T Consensus         6 ~~~dV~IIGA-G~sGl~~a~~L~~~G~--~v~i~Ek~~~iG   43 (298)
T d1w4xa1           6 EEVDVLVVGA-GFSGLYALYRLRELGR--SVHVIETAGDVG   43 (298)
T ss_dssp             SEEEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSSSC
T ss_pred             CCCCEEEECc-cHHHHHHHHHHHhCCC--CEEEEEcCCCcc
Confidence            3458999996 9999999999999998  899999865434

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=91.61  E-value=0.26  Score=41.26  Aligned_cols=116  Identities=22%  Similarity=0.258  Sum_probs=73.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~  106 (300)
                      ...||++||-   +  .....+...+.  ++..+|.++..+   |+.+             ...++.+..||+||+|+. 
T Consensus       121 ~g~kV~vIG~---~--P~v~~l~~~~~--~~~VlE~~p~~g---d~p~-------------~~~~~lLp~aD~viiTGs-  176 (251)
T d2h1qa1         121 KGKKVGVVGH---F--PHLESLLEPIC--DLSILEWSPEEG---DYPL-------------PASEFILPECDYVYITCA-  176 (251)
T ss_dssp             TTSEEEEESC---C--TTHHHHHTTTS--EEEEEESSCCTT---CEEG-------------GGHHHHGGGCSEEEEETH-
T ss_pred             CCCEEEEEec---c--hhHHHHHhcCC--cEEEEeCCCCCC---CCCc-------------hHHHHhhhcCCEEEEEec-
Confidence            4569999985   2  34445555554  899999875322   1111             123567899999999952 


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEeeehhHHHHHHHHH
Q 022263          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA  186 (300)
Q Consensus       107 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t~Lds~R~~~~la  186 (300)
                                      .++..-.+.|-++++++..+++.-|...+.+.   +++    +.-+.+-|+-..|..++.+.++
T Consensus       177 ----------------TlvN~Tl~~LL~~~~~a~~vvl~GPS~p~~P~---lf~----~Gv~~lag~~v~d~~~~~~~i~  233 (251)
T d2h1qa1         177 ----------------SVVDKTLPRLLELSRNARRITLVGPGTPLAPV---LFE----HGLQELSGFMVKDNARAFRIVA  233 (251)
T ss_dssp             ----------------HHHHTCHHHHHHHTTTSSEEEEESTTCCCCGG---GGG----TTCSEEEEEEESCHHHHHHHHT
T ss_pred             ----------------hhhcCCHHHHHHhCCcCCEEEEECCCcccCHH---HHh----cCCceEeEEEEeCHHHHHHHHH
Confidence                            34445556666778777544455577766553   232    3344555666789989888886


Q ss_pred             HHc
Q 022263          187 GKA  189 (300)
Q Consensus       187 ~~l  189 (300)
                      +--
T Consensus       234 ~Gg  236 (251)
T d2h1qa1         234 GAE  236 (251)
T ss_dssp             TSS
T ss_pred             cCC
Confidence            543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.57  E-value=0.27  Score=40.78  Aligned_cols=75  Identities=15%  Similarity=0.202  Sum_probs=46.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc---ccHHHHhccccCCCcEEEEec-CCc----------ccccc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG-NDQ----------LGQAL   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-t~d----------~~~a~   94 (300)
                      ..+.|+||++-+|.+++..|++.|.  +|++.+....   +....++++...  .+..+.. -+|          ..+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHHHc
Confidence            4788999999999999999999998  8888665432   222233333221  1222111 011          12234


Q ss_pred             CCCCEEEEcCCCC
Q 022263           95 EDSDVVIIPAGVP  107 (300)
Q Consensus        95 ~~aDiVIi~ag~~  107 (300)
                      -.-|++|..||..
T Consensus        83 g~idilinnag~~   95 (259)
T d1ja9a_          83 GGLDFVMSNSGME   95 (259)
T ss_dssp             SCEEEEECCCCCC
T ss_pred             CCCcEEEeccccc
Confidence            5799999999874

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.41  E-value=0.12  Score=42.48  Aligned_cols=159  Identities=14%  Similarity=0.143  Sum_probs=79.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHH-hccccCC--CcEEEEecCCcccccc--CCCCEEEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAAD-VGHINTR--SEVAGYMGNDQLGQAL--EDSDVVII  102 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~d-l~~~~~~--~~v~~~~~t~d~~~a~--~~aDiVIi  102 (300)
                      .++|.|+||+|-+|..++..|++.|.  +|+++|+.+.+....+ ..+....  ......  .....+.+  ...|++|.
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~iD~lIn   77 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEASASVIVKMTDSFTEQADQV--TAEVGKLLGDQKVDAILC   77 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSSEEEECCCCSCHHHHHHHH--HHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCccccccccceeecccCcHHHHHHH--HHHHHHHhCCCCceEEEE
Confidence            35899999999999999999999998  8999998542110000 0000000  000000  00111112  24799999


Q ss_pred             cCCCCC--CCC-Cc----chhhhhhhHHHHHHHHHHHHhh-CCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEee
Q 022263          103 PAGVPR--KPG-MT----RDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (300)
Q Consensus       103 ~ag~~~--~~g-~~----r~dl~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~t  174 (300)
                      .||...  .+- ..    ....+..|+.-.....+.+.++ ...+.+++++.-...           .+ .|..-.++.+
T Consensus        78 nAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~-----------~~-~~~~~~Y~as  145 (236)
T d1dhra_          78 VAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL-----------DG-TPGMIGYGMA  145 (236)
T ss_dssp             CCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG-----------SC-CTTBHHHHHH
T ss_pred             CCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHc-----------CC-ccCCcccHHH
Confidence            998522  111 11    1223455554444444444443 235777777532210           00 1111111222


Q ss_pred             ehhHHHHHHHHHHHcCCCCCceEEEEEe
Q 022263          175 TLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (300)
Q Consensus       175 ~Lds~R~~~~la~~l~v~~~~V~~~v~G  202 (300)
                      .---..|.+.+|.+++-.+..|++..+.
T Consensus       146 Kaal~~lt~~la~El~~~~~gI~vn~v~  173 (236)
T d1dhra_         146 KGAVHQLCQSLAGKNSGMPSGAAAIAVL  173 (236)
T ss_dssp             HHHHHHHHHHHTSTTSSCCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHhccCCCcEEEEEEE
Confidence            1112345666777776446677776664

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.37  E-value=0.38  Score=36.77  Aligned_cols=116  Identities=17%  Similarity=0.229  Sum_probs=63.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccccCCCcEEEEecCCcccc----ccCCCCEEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQ----ALEDSDVVI  101 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~~----a~~~aDiVI  101 (300)
                      +..+|.|+|+ |.+|...+..+...+.  +++.+|.++.+ ..+.++-   .. .+-.. ..++..+    ...+.|.+|
T Consensus        27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~--~Vi~~~~~~~~~~~a~~~G---a~-~~i~~-~~~~~~~~~~~~~~g~~~~i   98 (166)
T d1llua2          27 PGQWVAISGI-GGLGHVAVQYARAMGL--HVAAIDIDDAKLELARKLG---AS-LTVNA-RQEDPVEAIQRDIGGAHGVL   98 (166)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTT---CS-EEEET-TTSCHHHHHHHHHSSEEEEE
T ss_pred             CCCEEEEeec-cccHHHHHHHHHHcCC--ccceecchhhHHHhhhccC---cc-ccccc-cchhHHHHHHHhhcCCcccc
Confidence            3448999996 9999998888888884  89999986532 2233321   11 11111 1122222    235667777


Q ss_pred             EcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe
Q 022263          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (300)
Q Consensus       102 i~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~  173 (300)
                      +.++.+               +.+.   ..++-..|.+.+++++.|-+....-+..++     +...++.|.
T Consensus        99 ~~~~~~---------------~~~~---~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~-----~k~~~i~Gs  147 (166)
T d1llua2          99 VTAVSN---------------SAFG---QAIGMARRGGTIALVGLPPGDFPTPIFDVV-----LKGLHIAGS  147 (166)
T ss_dssp             ECCSCH---------------HHHH---HHHTTEEEEEEEEECCCCSSEEEEEHHHHH-----HTTCEEEEC
T ss_pred             cccccc---------------hHHH---HHHHHhcCCcEEEEEEecCCCccCCHHHHH-----hCCcEEEEE
Confidence            765432               1122   234444588999888765432111111222     224578887

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=91.32  E-value=0.27  Score=37.69  Aligned_cols=69  Identities=12%  Similarity=0.045  Sum_probs=41.2

Q ss_pred             CceEEEEcCCCC--hHHHHHHHHHhCCCCCEEEEEecCCc-ccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           28 DRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        28 ~~KI~IIGaaG~--VG~~~a~~L~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      ..||++||=..+  |..+++..+...|.  +++++=..+. ... .++.+. ....+..   ++|+++++++||+|..+
T Consensus         3 gl~i~~vGD~~~sRv~~Sl~~~l~~~g~--~~~~~~p~~~~~~~-~~~~~~-~~~~~~~---~~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           3 GLVFALLGDLKYARTVNSLLRILTRFRP--KLVYLISPQLLRAR-KEILDE-LNYPVKE---VENPFEVINEVDVLYVT   74 (153)
T ss_dssp             TCEEEEEECCSSCHHHHHHHHHGGGSCC--SEEEEECCGGGCCC-HHHHTT-CCSCEEE---ESCGGGTGGGCSEEEEE
T ss_pred             CCEEEEECCCCccHHHHHHHHHHHHcCC--eeEEEecccccccc-hhhccc-CCCeEEE---EeCHHHHhhcCCeEEEe
Confidence            469999995333  88888888887775  5554433221 101 011111 1224544   35788999999988776

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.27  E-value=0.12  Score=42.50  Aligned_cols=73  Identities=21%  Similarity=0.321  Sum_probs=44.7

Q ss_pred             ce-EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCCCC
Q 022263           29 RK-VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (300)
Q Consensus        29 ~K-I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag~~  107 (300)
                      || |.|+||++-+|..++..|++.|.  +|++.|+++.+.. .|+.+.......  .  .....+.....|+++..||..
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga--~V~~~~~~~~~~~-~d~~~~~~~~~~--~--~~~~~~~~~~id~lv~~Ag~~   73 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEVI-ADLSTAEGRKQA--I--ADVLAKCSKGMDGLVLCAGLG   73 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEE-CCTTSHHHHHHH--H--HHHHTTCTTCCSEEEECCCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECChHHHH-HHhcCHHHHHHH--H--HHHHHHhCCCCcEEEEcCCCC
Confidence            45 47889989999999999999998  8999998653211 122111100000  0  000113345689999998865


Q ss_pred             C
Q 022263          108 R  108 (300)
Q Consensus       108 ~  108 (300)
                      .
T Consensus        74 ~   74 (257)
T d1fjha_          74 P   74 (257)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=91.22  E-value=0.077  Score=44.13  Aligned_cols=31  Identities=26%  Similarity=0.392  Sum_probs=28.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~   63 (300)
                      -|.|||| |.+|.++|+.|+++|+  +++|+|..
T Consensus         5 DvvIIGa-Gi~Gls~A~~La~~G~--~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVGA-GSMGMAAGYQLAKQGV--KTLLVDAF   35 (281)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCC
Confidence            4899996 9999999999999997  89999874

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.97  E-value=0.27  Score=39.68  Aligned_cols=103  Identities=19%  Similarity=0.313  Sum_probs=59.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCC-EEEEEecCCcccHHHHhccccCCCcEEE---------------------EecC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVS-RLALYDIANTPGVAADVGHINTRSEVAG---------------------YMGN   87 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~-el~L~D~~~~~g~~~dl~~~~~~~~v~~---------------------~~~t   87 (300)
                      +|.|||- |.-|..++..|...++.+ +++.+|.+..     +|.....+.++..                     ....
T Consensus         3 ~IkViGv-GGaG~n~v~~~~~~~~~~v~~iainTD~~-----~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~   76 (198)
T d1ofua1           3 VIKVIGV-GGGGGNAVNHMAKNNVEGVEFICANTDAQ-----ALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDR   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESBTG-----GGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHTH
T ss_pred             eEEEEEE-CchHHHHHHHHHHcCCCCeEEEEEeCcHH-----HHhcCCccceeccccccccCCCCCCChHHHHHHHHHHH
Confidence            6889995 999999999998887642 7788887541     1221111111100                     0001


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus        88 ~d~~~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      ....+.++++|+||++||.....|       ..=.|++.+++++.   . --.+-++|=|-.
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGGGTG-------tgaapviA~~ake~---g-~lvvaivtlPF~  127 (198)
T d1ofua1          77 ERISEVLEGADMVFITTGMGGGTG-------TGAAPIIAEVAKEM---G-ILTVAVVTRPFP  127 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHT---T-CEEEEEEEECCG
T ss_pred             HHHHHHhCCCCeEEEEecCCCCcc-------ccHHHHHHHHHHHc---C-CCEEEEEecchH
Confidence            124567899999999998764333       23356666665442   2 223444566655

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.96  E-value=1.6  Score=32.21  Aligned_cols=88  Identities=19%  Similarity=0.247  Sum_probs=54.7

Q ss_pred             CCCceEEEEcCC---CChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEE
Q 022263           26 VPDRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        26 ~~~~KI~IIGaa---G~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      ..+..|+||||+   +..|..+...|...+ .++|+.+.....     ++.      .++.+   .++.+.=...|++++
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~~-----~i~------G~~~y---~sl~dlp~~vDlvvi   70 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEE-----EVQ------GVKAY---KSVKDIPDEIDLAII   70 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCS-----EET------TEECB---SSTTSCSSCCSEEEE
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCcc-----ccC------CeEee---cchhhcCCCCceEEE
Confidence            356689999987   788888887776544 458998865321     111      12222   233332356899999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~  144 (300)
                      +.                ..+.+.++.+++.+.+-.+.+++.
T Consensus        71 ~v----------------p~~~~~~~~~~~~~~g~~~~vi~s   96 (129)
T d2csua1          71 VV----------------PKRFVKDTLIQCGEKGVKGVVIIT   96 (129)
T ss_dssp             CS----------------CHHHHHHHHHHHHHHTCCEEEECC
T ss_pred             ec----------------ChHHhHHHHHHHHHcCCCEEEEec
Confidence            74                245556667777777766655543

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=90.83  E-value=0.12  Score=44.61  Aligned_cols=105  Identities=19%  Similarity=0.236  Sum_probs=59.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHh----CCCC-----CEEEEEecCCc-ccHHHHhccccCCCcEEEEecCCccccccC--C
Q 022263           29 RKVAVLGAAGGIGQPLALLMKL----NPLV-----SRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALE--D   96 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~----~~~~-----~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~--~   96 (300)
                      .||.|.|| |..|..++..|..    .|+.     +.++++|.+-. .....|+.+...+ .........++.+.++  +
T Consensus        26 ~kiV~~GA-GsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~~-~a~~~~~~~~l~~~i~~vk  103 (298)
T d1gq2a1          26 HTVLFQGA-GEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEH-FAHEHCEMKNLEDIVKDIK  103 (298)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGG-GCBSCCCCCCHHHHHHHHC
T ss_pred             cEEEEECc-cHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHHH-HHHHhhhhhhhHHHhhccC
Confidence            48999996 9999988876653    3432     47999998531 0011123221110 0000000123334443  3


Q ss_pred             CCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      .+++|-+.+.+   |.     +  +    +++.+.|.+.+++.+|+-.|||..
T Consensus       104 ptvliG~s~~~---g~-----f--t----~evv~~ma~~~~~PIIFaLSNPt~  142 (298)
T d1gq2a1         104 PTVLIGVAAIG---GA-----F--T----QQILQDMAAFNKRPIIFALSNPTS  142 (298)
T ss_dssp             CSEEEECSCCT---TC-----S--C----HHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             hheeEeccccc---Cc-----C--C----HHHHHHHHhhCCCCEEEEccCCCC
Confidence            66777765543   31     1  2    445566778899999999999975

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=90.82  E-value=0.15  Score=37.84  Aligned_cols=37  Identities=19%  Similarity=0.304  Sum_probs=31.4

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ...|.+++|||| |.+|.-+|..+...|.  ++.+++...
T Consensus        23 ~~~p~~vvIiGg-G~IG~E~A~~~~~~G~--~Vtive~~~   59 (125)
T d1ojta2          23 KEVPGKLLIIGG-GIIGLEMGTVYSTLGS--RLDVVEMMD   59 (125)
T ss_dssp             CCCCSEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             cccCCeEEEECC-CHHHHHHHHHhhcCCC--EEEEEEeec
Confidence            345679999996 9999999999998887  999998743

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.67  E-value=0.76  Score=38.59  Aligned_cols=114  Identities=14%  Similarity=0.163  Sum_probs=60.5

Q ss_pred             ceEEE-EcCCCChHHHHHHHHHhCCCCCEEEEEec---CCc-ccHHHHhccc-c-CCCcEEEEec-CCccc-------cc
Q 022263           29 RKVAV-LGAAGGIGQPLALLMKLNPLVSRLALYDI---ANT-PGVAADVGHI-N-TRSEVAGYMG-NDQLG-------QA   93 (300)
Q Consensus        29 ~KI~I-IGaaG~VG~~~a~~L~~~~~~~el~L~D~---~~~-~g~~~dl~~~-~-~~~~v~~~~~-t~d~~-------~a   93 (300)
                      +||++ +||++-+|.++|..|+..|.  .+++++.   +.. .....+.... . ....+..+.. -+|.+       +.
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga--~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~   79 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV   79 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCC--CeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhc
Confidence            47765 59999999999999999885  4555544   111 1111111111 1 1113332211 11210       11


Q ss_pred             -cCCCCEEEEcCCCCCCCCC---c---chhhhhhh----HHHHHHHHHHHHhhCCCeEEEEec
Q 022263           94 -LEDSDVVIIPAGVPRKPGM---T---RDDLFNIN----AGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        94 -~~~aDiVIi~ag~~~~~g~---~---r~dl~~~N----~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                       -...|++|..+|.......   +   -...+.-|    ....+.+.+.|.+.. .+.+|+++
T Consensus        80 ~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~-~G~Iv~is  141 (285)
T d1jtva_          80 TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTG  141 (285)
T ss_dssp             TTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEE
T ss_pred             cccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC-CCceEEEe
Confidence             1468999999987533221   1   12233344    346677888887765 45566664

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=90.64  E-value=1.1  Score=33.38  Aligned_cols=116  Identities=13%  Similarity=0.059  Sum_probs=67.3

Q ss_pred             CceEEEEcCC---CChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           28 DRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        28 ~~KI~IIGaa---G~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +..|+||||+   +..|..++..|.+.++  .+.++-.+.....   +.      ....+   .++.+.=...|+|++..
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~--~~~~v~~~~~~~~---i~------g~~~~---~~l~~i~~~iD~v~v~~   78 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY--RVLPVNPRFQGEE---LF------GEEAV---ASLLDLKEPVDILDVFR   78 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTC--EEEEECGGGTTSE---ET------TEECB---SSGGGCCSCCSEEEECS
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCC--CceEEEeccccce---ee------ceecc---cchhhccCCCceEEEec
Confidence            4579999986   4688888888999898  7888866432111   11      12222   23333235679999873


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCcccHHHHHHHHHHhCCCCCCcEEEe-e-ehhHHHH
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-T-TLDVVRA  181 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~~~i~~~~~~~~~~~~~~kviG~-t-~Lds~R~  181 (300)
                                      +.+.+.++.+++.+.+.+++++.-.--.+    =+.+..++.| +   ++++= | ..++.|+
T Consensus        79 ----------------p~~~v~~~v~~~~~~g~k~i~~q~G~~~~----e~~~~a~~~G-i---~vV~~~C~~ie~~rl  133 (136)
T d1iuka_          79 ----------------PPSALMDHLPEVLALRPGLVWLQSGIRHP----EFEKALKEAG-I---PVVADRCLMVEHKRL  133 (136)
T ss_dssp             ----------------CHHHHTTTHHHHHHHCCSCEEECTTCCCH----HHHHHHHHTT-C---CEEESCCHHHHHHHH
T ss_pred             ----------------cHHHHHHHHHHHHhhCCCeEEEecCccCH----HHHHHHHHcC-C---EEEcCCccHHHHHHh
Confidence                            23445555555566677766543222222    2345566665 3   66663 6 4666554

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.51  E-value=0.1  Score=38.57  Aligned_cols=37  Identities=24%  Similarity=0.306  Sum_probs=31.7

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        25 ~~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ...|.+++|||| |.+|.-+|..+...|.  ++.++...+
T Consensus        22 ~~~p~~~viiG~-G~iglE~A~~~~~~G~--~Vtvi~~~~   58 (123)
T d1dxla2          22 SEIPKKLVVIGA-GYIGLEMGSVWGRIGS--EVTVVEFAS   58 (123)
T ss_dssp             SSCCSEEEESCC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             cccCCeEEEEcc-chHHHHHHHHHHhcCC--eEEEEEEcc
Confidence            345679999996 9999999999998887  999998843

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=90.46  E-value=0.62  Score=36.25  Aligned_cols=99  Identities=20%  Similarity=0.220  Sum_probs=57.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccccCCCcEEEEecCC-ccc-----cccCCCCE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGND-QLG-----QALEDSDV   99 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~-d~~-----~a~~~aDi   99 (300)
                      +.-+|+|+|+ |.+|...+..+...+ +..|+..|.++.+ ..+.++-..    .+-.....+ ..+     ..-.++|+
T Consensus        28 ~G~~VlV~G~-G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~~Ga~----~~i~~~~~~~~~~~~~~~~~~~G~d~  101 (174)
T d1e3ia2          28 PGSTCAVFGL-GCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKALGAT----DCLNPRELDKPVQDVITELTAGGVDY  101 (174)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCS----EEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHHhCCC----cccCCccchhhhhhhHhhhhcCCCcE
Confidence            3348999995 999999888877776 3578999986543 233333211    111000000 000     01268999


Q ss_pred             EEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCC-eEEEEecCCCc
Q 022263          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN-AIVNMISNPVN  149 (300)
Q Consensus       100 VIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~-a~viv~tNP~d  149 (300)
                      ||.++|.+               ..   +-+.++-..|. +.++++..|.+
T Consensus       102 vie~~G~~---------------~~---~~~a~~~~~~g~G~~v~vG~~~~  134 (174)
T d1e3ia2         102 SLDCAGTA---------------QT---LKAAVDCTVLGWGSCTVVGAKVD  134 (174)
T ss_dssp             EEESSCCH---------------HH---HHHHHHTBCTTTCEEEECCCSSS
T ss_pred             EEEecccc---------------hH---HHHHHHHhhcCCeEEEecCCCCC
Confidence            99998753               11   22233334564 78888887755

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.35  E-value=0.11  Score=47.13  Aligned_cols=34  Identities=32%  Similarity=0.543  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .||.|||+ |.+|+.++..|+..|+ ++|.|+|-+.
T Consensus        38 ~kVlvvG~-GglG~ei~k~L~~~Gv-g~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGA-GGLGCELLKNLALSGF-RQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECS-STTHHHHHHHHHTTTC-CCEEEECCCB
T ss_pred             CeEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECCC
Confidence            48999996 9999999999999985 6899999853

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=90.34  E-value=0.87  Score=37.22  Aligned_cols=113  Identities=13%  Similarity=0.120  Sum_probs=62.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC-----cccHHHHhccccCCCcEEEEecC-Ccc---c---ccc--
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----TPGVAADVGHINTRSEVAGYMGN-DQL---G---QAL--   94 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~-----~~g~~~dl~~~~~~~~v~~~~~t-~d~---~---~a~--   94 (300)
                      ..|.|+||+|-+|..++..|+++|. ..|+|+.++.     ......++....  ..+..+... +|.   +   +.+  
T Consensus        10 gt~lVTGgs~GIG~a~a~~la~~Ga-~~vvl~~R~~~~~~~~~~~~~~l~~~g--~~v~~~~~Dv~d~~~~~~~~~~i~~   86 (259)
T d2fr1a1          10 GTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEALG--ARTTVAACDVTDRESVRELLGGIGD   86 (259)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCccCHHHHHHHHHHHHhcc--ccccccccccchHHHHHHhhccccc
Confidence            3789999999999999999999885 3688886642     122223333221  233332211 111   0   111  


Q ss_pred             -CCCCEEEEcCCCCCCCCC---cc---hhhhhhhHHHHHHHHHHHHhhCCCeEEEEec
Q 022263           95 -EDSDVVIIPAGVPRKPGM---TR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (300)
Q Consensus        95 -~~aDiVIi~ag~~~~~g~---~r---~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (300)
                       -..|.||+.+|.......   +.   ...+..|+.....+.+.+... +.+.++++|
T Consensus        87 ~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~-~~~~iv~~S  143 (259)
T d2fr1a1          87 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFS  143 (259)
T ss_dssp             TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEE
T ss_pred             cccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc-CCceEeeec
Confidence             257889999887543221   11   123445666656666555443 344555554

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.26  E-value=0.35  Score=39.62  Aligned_cols=32  Identities=19%  Similarity=0.319  Sum_probs=28.8

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..|+||++-+|..++..|++.|.  +|++.|++.
T Consensus         4 AlVTGas~GIG~aia~~la~~G~--~Vvi~~r~~   35 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGF--RVVVHYRHS   35 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            36889988899999999999998  999999865

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.22  E-value=0.24  Score=40.69  Aligned_cols=36  Identities=22%  Similarity=0.273  Sum_probs=31.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT   65 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~   65 (300)
                      .+.+.|+||++-+|..++..|++.|.  .|++.|+++.
T Consensus         5 GKvalITGas~GIG~aia~~la~~G~--~V~~~~r~~~   40 (248)
T d2o23a1           5 GLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNS   40 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChH
Confidence            34567999999999999999999998  8999999764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.15  E-value=0.27  Score=37.94  Aligned_cols=98  Identities=18%  Similarity=0.216  Sum_probs=56.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccccCCCcEEEEecCCc-cccccCCCCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQ-LGQALEDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~d-~~~a~~~aDiVIi~a  104 (300)
                      +..+|.|+|+ |.+|...+..+...|.  +++.+|.++.+ ..+.++-   .. .+-.+....+ .+......|+|+.++
T Consensus        27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~lG---a~-~~i~~~~~~~~~~~~~~~~d~vi~~~   99 (168)
T d1piwa2          27 PGKKVGIVGL-GGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKMG---AD-HYIATLEEGDWGEKYFDTFDLIVVCA   99 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHHT---CS-EEEEGGGTSCHHHHSCSCEEEEEECC
T ss_pred             CCCEEEEECC-CCcchhHHHHhhhccc--cccccccchhHHHHhhccC---Cc-EEeeccchHHHHHhhhcccceEEEEe
Confidence            4458999996 9999998887777776  78889986542 2333332   11 1111111112 223346789999987


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                      +.+.....      .          ..++-..|.+.+++++-|
T Consensus       100 ~~~~~~~~------~----------~~~~~l~~~G~iv~~G~~  126 (168)
T d1piwa2         100 SSLTDIDF------N----------IMPKAMKVGGRIVSISIP  126 (168)
T ss_dssp             SCSTTCCT------T----------TGGGGEEEEEEEEECCCC
T ss_pred             cCCccchH------H----------HHHHHhhccceEEEeccc
Confidence            75432111      1          113334578888888543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.01  E-value=0.33  Score=37.86  Aligned_cols=94  Identities=20%  Similarity=0.253  Sum_probs=53.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccccCCCcEEEEecCCccccc----c--CCCCEE
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQA----L--EDSDVV  100 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~~a----~--~~aDiV  100 (300)
                      .-+|+|+|+ |.+|...+..+...+. ..|+..|.++.+ ..+.++-   .. .+-.+. +.++.+.    .  +++|+|
T Consensus        28 g~~VlI~Ga-G~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~lG---a~-~~i~~~-~~~~~~~v~~~t~g~G~D~v  100 (174)
T d1jqba2          28 GSSVVVIGI-GAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFYG---AT-DILNYK-NGHIEDQVMKLTNGKGVDRV  100 (174)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHHT---CS-EEECGG-GSCHHHHHHHHTTTSCEEEE
T ss_pred             CCEEEEEcC-Ccchhhhhhhhhcccc-cccccccchhhhHHHHHhhC---cc-cccccc-chhHHHHHHHHhhccCcceE
Confidence            348999996 9999988877776664 468999986532 2233332   11 111010 1122121    1  469999


Q ss_pred             EEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       101 Ii~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      |.++|.+.               .+.+.   ++-..|.+.++++..
T Consensus       101 id~~g~~~---------------~~~~a---~~~~~~~G~iv~~G~  128 (174)
T d1jqba2         101 IMAGGGSE---------------TLSQA---VKMVKPGGIISNINY  128 (174)
T ss_dssp             EECSSCTT---------------HHHHH---HHHEEEEEEEEECCC
T ss_pred             EEccCCHH---------------HHHHH---HHHHhcCCEEEEEee
Confidence            99987531               11222   233358888888753

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.96  E-value=0.13  Score=43.19  Aligned_cols=31  Identities=26%  Similarity=0.381  Sum_probs=28.0

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        31 I~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      |+|||| |..|.+.|..|.+.|+  ++.++|...
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~--~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGL--NVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            789996 9999999999999998  899999743

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=89.82  E-value=0.64  Score=34.02  Aligned_cols=94  Identities=12%  Similarity=-0.004  Sum_probs=55.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecC-Cc---c-ccccCCCCEEEEcC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---L-GQALEDSDVVIIPA  104 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~-~~a~~~aDiVIi~a  104 (300)
                      +|.|+|. |.+|..++..|..  .  +++++|.++....  .+....    +..+.|. ++   + +..+.+|+.+|++.
T Consensus         2 HivI~G~-g~~g~~l~~~L~~--~--~i~vi~~d~~~~~--~~~~~~----~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~   70 (129)
T d2fy8a1           2 HVVICGW-SESTLECLRELRG--S--EVFVLAEDENVRK--KVLRSG----ANFVHGDPTRVSDLEKANVRGARAVIVNL   70 (129)
T ss_dssp             CEEEESC-CHHHHHHHHTSCG--G--GEEEEESCTTHHH--HHHHTT----CEEEESCTTSHHHHHHTTCTTCSEEEECC
T ss_pred             EEEEECC-CHHHHHHHHHHcC--C--CCEEEEcchHHHH--HHHhcC----ccccccccCCHHHHHHhhhhcCcEEEEec
Confidence            5889996 9999999987743  2  5788888765333  222221    1222222 12   1 23478999999974


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEec-CCCc
Q 022263          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS-NPVN  149 (300)
Q Consensus       105 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~t-NP~d  149 (300)
                      ..         |  ..|..    ++..+++.+|+..++.-+ +|-.
T Consensus        71 ~~---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~  101 (129)
T d2fy8a1          71 ES---------D--SETIH----CILGIRKIDESVRIIAEAERYEN  101 (129)
T ss_dssp             SS---------H--HHHHH----HHHHHHHHCSSSCEEEECSSGGG
T ss_pred             cc---------h--hhhHH----HHHHHHHHCCCceEEEEEcCHHH
Confidence            21         1  23443    345577889987555554 4554

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.67  E-value=0.37  Score=40.19  Aligned_cols=114  Identities=20%  Similarity=0.131  Sum_probs=64.4

Q ss_pred             ceEE-EEcCCCChHHHHHHHHHhC-CCCCEEEEEecCCccc--HHHHhccccCCCcEEEEec-CCc----------cccc
Q 022263           29 RKVA-VLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG-NDQ----------LGQA   93 (300)
Q Consensus        29 ~KI~-IIGaaG~VG~~~a~~L~~~-~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-t~d----------~~~a   93 (300)
                      ++|+ |+||++-+|..+|..|+.. +.  .|++.+++..+.  .+.+|.....  .+..+.. -+|          ..+.
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~   78 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKE   78 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHh
Confidence            4674 7799899999999998864 55  899999976432  2334443221  1111110 111          2233


Q ss_pred             cCCCCEEEEcCCCCCCC-CC--cch---hhhhhhHHHHHHHHHHHHhhC-CCeEEEEecC
Q 022263           94 LEDSDVVIIPAGVPRKP-GM--TRD---DLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (300)
Q Consensus        94 ~~~aDiVIi~ag~~~~~-g~--~r~---dl~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (300)
                      +..-|++|..||..... ..  +..   ..+.-|.--...+.+.+...- +.+.+|+++.
T Consensus        79 ~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          79 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            56899999999974322 11  111   234445544444444444332 3577777764

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.64  E-value=1  Score=36.73  Aligned_cols=104  Identities=15%  Similarity=0.140  Sum_probs=58.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHh---CCCCCEEEEEecCCcccHH-HHhccccCCCcEEEEecC-Cc---ccc-------
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKL---NPLVSRLALYDIANTPGVA-ADVGHINTRSEVAGYMGN-DQ---LGQ-------   92 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~---~~~~~el~L~D~~~~~g~~-~dl~~~~~~~~v~~~~~t-~d---~~~-------   92 (300)
                      |++|.|+||++-+|..++..|+.   .+.  .|++.++++.+.+. .++....  ..+..+..+ +|   .++       
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~   77 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKNH--SNIHILEIDLRNFDAYDKLVADIEG   77 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHHC--TTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHhcC--CcEEEEEEEeccHHHHHHHHhhhHH
Confidence            45699999999999999988864   454  89999997654332 2322211  123322111 11   111       


Q ss_pred             --ccCCCCEEEEcCCCCCCCC----Ccc---hhhhhhh----HHHHHHHHHHHHhh
Q 022263           93 --ALEDSDVVIIPAGVPRKPG----MTR---DDLFNIN----AGIVKDLCSAIAKY  135 (300)
Q Consensus        93 --a~~~aDiVIi~ag~~~~~g----~~r---~dl~~~N----~~i~~~i~~~i~~~  135 (300)
                        .....|++|..||.....+    .+.   .+.+..|    ....+.+.+.+++.
T Consensus        78 ~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~  133 (248)
T d1snya_          78 VTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKA  133 (248)
T ss_dssp             HHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             HhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence              1245899999999743322    111   1233334    34556666666654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=89.49  E-value=0.13  Score=41.71  Aligned_cols=33  Identities=27%  Similarity=0.283  Sum_probs=29.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT   65 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~   65 (300)
                      -|.|||| |..|...|..|++.++  .+.|+|..+.
T Consensus         4 DViIIGa-G~aGl~aA~~la~~G~--~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGG-GPSGLMAAIGAAEEGA--NVLLLDKGNK   36 (251)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCCC
Confidence            4899996 9999999999999998  8999998653

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=89.33  E-value=2.4  Score=34.63  Aligned_cols=31  Identities=23%  Similarity=0.215  Sum_probs=26.5

Q ss_pred             EEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           32 AVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        32 ~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .|+||++-+|..++..|+..|.  +|++.|.+.
T Consensus         6 lITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   36 (284)
T d1e7wa_           6 LVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRS   36 (284)
T ss_dssp             EETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCC
Confidence            4569888999999999999997  899988754

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.22  E-value=2.7  Score=30.22  Aligned_cols=81  Identities=12%  Similarity=0.158  Sum_probs=51.1

Q ss_pred             ceEEEEcCC---CChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           29 RKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        29 ~KI~IIGaa---G~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      +.|+||||+   +..|..+...|.+.|+  +|+.+..+..  .   +.      .+..+   .++.+.=...|++++.. 
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~--~V~pVnP~~~--~---i~------G~~~y---~sl~~lp~~~D~vvi~v-   64 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNPNYD--E---IE------GLKCY---RSVRELPKDVDVIVFVV-   64 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS--E---ET------TEECB---SSGGGSCTTCCEEEECS-
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCC--EEEEEccccc--c---cc------Ccccc---ccchhccccceEEEEEe-
Confidence            379999986   5688888899999998  7888864321  1   11      12222   23433335679998873 


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEE
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~v  141 (300)
                                     ..+.+.++.+++.+.++++++
T Consensus        65 ---------------p~~~~~~~l~~~~~~g~k~v~   85 (116)
T d1y81a1          65 ---------------PPKVGLQVAKEAVEAGFKKLW   85 (116)
T ss_dssp             ---------------CHHHHHHHHHHHHHTTCCEEE
T ss_pred             ---------------CHHHHHHHHHHHHhcCCceEE
Confidence                           234455666666677777654

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=89.19  E-value=0.41  Score=38.57  Aligned_cols=36  Identities=28%  Similarity=0.318  Sum_probs=31.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .+..+|+|-| .|+||+.++..|.+.|-  .|+.+|++.
T Consensus        25 L~gk~v~IqG-~G~VG~~~A~~L~~~Ga--kvvv~d~d~   60 (201)
T d1c1da1          25 LDGLTVLVQG-LGAVGGSLASLAAEAGA--QLLVADTDT   60 (201)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCC--EEEEecchH
Confidence            4556999999 59999999999999886  899999864

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=89.08  E-value=0.44  Score=37.11  Aligned_cols=35  Identities=14%  Similarity=0.180  Sum_probs=28.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT   65 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~   65 (300)
                      -+|.|+|| |.+|...+..+...|. ..|+.+|.++.
T Consensus        30 ~~VlV~Ga-G~iG~~~~~~ak~~Ga-~~Vi~~~~~~~   64 (182)
T d1vj0a2          30 KTVVIQGA-GPLGLFGVVIARSLGA-ENVIVIAGSPN   64 (182)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTB-SEEEEEESCHH
T ss_pred             CEEEEECC-Cccchhheeccccccc-ccccccccccc
Confidence            48999996 9999988887777774 47999998653

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.98  E-value=0.16  Score=38.60  Aligned_cols=30  Identities=27%  Similarity=0.362  Sum_probs=25.3

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~   63 (300)
                      ||+|||| |++|..+|..|.. +.  ++.+++..
T Consensus         2 rVvIIGg-G~~G~e~A~~l~~-~~--~Vtvv~~~   31 (167)
T d1xhca1           2 KVVIVGN-GPGGFELAKQLSQ-TY--EVTVIDKE   31 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHTT-TS--EEEEECSS
T ss_pred             eEEEECC-cHHHHHHHHHHHc-CC--CEEEEecc
Confidence            8999996 9999999988865 33  89999864

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.96  E-value=0.11  Score=40.93  Aligned_cols=34  Identities=24%  Similarity=0.269  Sum_probs=29.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~   63 (300)
                      +..+|+|||| |..|...|..+++.++  +++++|..
T Consensus         4 k~~dVvIIGG-GpaGl~AA~~~ar~g~--~v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGS-GPAGYTAAVYAARANL--QPVLITGM   37 (190)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHTTTC--CCEEECCS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCC--ceEEEEee
Confidence            3458999996 9999999999999887  78898754

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=88.71  E-value=0.33  Score=39.79  Aligned_cols=72  Identities=14%  Similarity=0.217  Sum_probs=37.8

Q ss_pred             CCCceEEEEcCCCCh----HHHHHHHHHhC-CCCCEEE-EEecCCcccHHHHhccccCCCcEEEEecCCcccccc--CCC
Q 022263           26 VPDRKVAVLGAAGGI----GQPLALLMKLN-PLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL--EDS   97 (300)
Q Consensus        26 ~~~~KI~IIGaaG~V----G~~~a~~L~~~-~~~~el~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~--~~a   97 (300)
                      .+++||+|||+ |.+    +...+..+... +-+ +|+ ++|.+.....  .+...........+   +++++.+  .+.
T Consensus        14 ~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~-~ivav~d~~~~~~~--~~~~~~~~~~~~~~---~~~~~l~~~~~i   86 (237)
T d2nvwa1          14 SRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQF-QIVALYNPTLKSSL--QTIEQLQLKHATGF---DSLESFAQYKDI   86 (237)
T ss_dssp             GCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTE-EEEEEECSCHHHHH--HHHHHTTCTTCEEE---SCHHHHHHCTTC
T ss_pred             CCCeEEEEEec-CccccHHHHHHHHHHHhcCCCe-EEEEEEcCCHHHHH--HHHHhcccccceee---cchhhccccccc
Confidence            46789999995 874    33334445442 323 555 8887653222  11111111123333   3555655  467


Q ss_pred             CEEEEcC
Q 022263           98 DVVIIPA  104 (300)
Q Consensus        98 DiVIi~a  104 (300)
                      |+|+++.
T Consensus        87 D~V~i~t   93 (237)
T d2nvwa1          87 DMIVVSV   93 (237)
T ss_dssp             SEEEECS
T ss_pred             ceeeccC
Confidence            8888873

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=88.62  E-value=0.36  Score=36.99  Aligned_cols=64  Identities=17%  Similarity=0.219  Sum_probs=42.7

Q ss_pred             CCceEEEEcC--CCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           27 PDRKVAVLGA--AGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGa--aG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +.+||+++|-  .+.|..+++..+..-|.  ++++......   ..  ..    ..+..+   .+++++++++|+|..+.
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~--~~~i~~P~~~---~~--~~----~~~~~~---~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGA--RVLFSGPSEW---QD--EE----NTFGTY---VSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCC--cccccCCchh---hc--cc----cceeEE---EechhccccCceeeeeE
Confidence            4579999995  25699999988888776  7777755321   00  01    123332   46679999999988763

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.60  E-value=1.5  Score=35.68  Aligned_cols=105  Identities=19%  Similarity=0.190  Sum_probs=59.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEec-CCcc----------cccc--
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQL----------GQAL--   94 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~a~--   94 (300)
                      +..|.|+||++-+|..++..|+..|..-.|++.+++..+.+  ++.... ...+..+.. -+|.          .+.+  
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~--~l~~~~-~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~   79 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKAT--ELKSIK-DSRVHVLPLTVTCDKSLDTFVSKVGEIVGS   79 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCH--HHHTCC-CTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHH--HHHHhh-CCceEEEEEecCCHHHHHHHHHHHHHHhCC
Confidence            35789999999999999999999885336777776654333  233221 112332211 1111          1112  


Q ss_pred             CCCCEEEEcCCCCCCCC----Ccc---hhhhhhh----HHHHHHHHHHHHhh
Q 022263           95 EDSDVVIIPAGVPRKPG----MTR---DDLFNIN----AGIVKDLCSAIAKY  135 (300)
Q Consensus        95 ~~aDiVIi~ag~~~~~g----~~r---~dl~~~N----~~i~~~i~~~i~~~  135 (300)
                      .+.|++|..||.....+    .+.   ...+..|    ..+.+.+.+.+++.
T Consensus        80 ~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~  131 (250)
T d1yo6a1          80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNA  131 (250)
T ss_dssp             GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH
T ss_pred             CCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            24899999999643211    121   2233344    34556667777654

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=88.09  E-value=0.46  Score=37.21  Aligned_cols=78  Identities=14%  Similarity=0.089  Sum_probs=42.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHH----Hhcccc-CCCcEEE-----EecCCccccccCCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA----DVGHIN-TRSEVAG-----YMGNDQLGQALEDS   97 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~----dl~~~~-~~~~v~~-----~~~t~d~~~a~~~a   97 (300)
                      |.||+|-| -|.+|..++..+..++-++-+.+-|..+......    |..... .......     +....+..++++++
T Consensus         1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~v   79 (171)
T d1cf2o1           1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEA   79 (171)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTC
T ss_pred             CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCC
Confidence            67999999 5999999988887776443344555543211111    111100 0000000     00012344567899


Q ss_pred             CEEEEcCCC
Q 022263           98 DVVIIPAGV  106 (300)
Q Consensus        98 DiVIi~ag~  106 (300)
                      |+||.+-|.
T Consensus        80 DvViEcTG~   88 (171)
T d1cf2o1          80 DIVIDCTPE   88 (171)
T ss_dssp             SEEEECCST
T ss_pred             CEEEEccCC
Confidence            999999764

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.98  E-value=0.23  Score=40.22  Aligned_cols=34  Identities=32%  Similarity=0.556  Sum_probs=30.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +.+.|+||++-+|..++..|++.|.  +|++.|+++
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   35 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRR   35 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            3678889999999999999999997  899999865

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=87.95  E-value=0.84  Score=37.23  Aligned_cols=72  Identities=13%  Similarity=0.090  Sum_probs=40.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCC---CCEEEEEecCC-cccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPL---VSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~---~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~  103 (300)
                      +.||+|||- |+-|.+-|+.|...|+   .+--+.+-.++ ......--.+..........    +.+||.+.||+|.+.
T Consensus        44 ~KkIaViGY-GsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~----~v~EAv~~ADiVmiL  118 (226)
T d1qmga2          44 IKQIGVIGW-GSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLG----DMWETISGSDLVLLL  118 (226)
T ss_dssp             CSEEEEECC-SSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEE----EHHHHHHTCSEEEEC
T ss_pred             CCEEEEEEe-ccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCccc----CHHHHHhhCCEEEEe
Confidence            358999996 9999999999998553   11123333322 12111111221111111111    235889999999998


Q ss_pred             C
Q 022263          104 A  104 (300)
Q Consensus       104 a  104 (300)
                      .
T Consensus       119 l  119 (226)
T d1qmga2         119 I  119 (226)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=87.85  E-value=0.19  Score=42.63  Aligned_cols=32  Identities=25%  Similarity=0.372  Sum_probs=27.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHh-----CCCCCEEEEEecCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKL-----NPLVSRLALYDIAN   64 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~-----~~~~~el~L~D~~~   64 (300)
                      -|.|||| |.+|.++|..|++     .|+  ++.++|..+
T Consensus         9 DV~IvGa-G~aGl~lA~~La~~~~~~~G~--~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGA-GPAGLMAARVLSEYVRQKPDL--KVRIIDKRS   45 (360)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHHHHSTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHhcccccCCC--cEEEEcCCC
Confidence            5899996 9999999999974     577  899999853

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=87.70  E-value=0.38  Score=36.97  Aligned_cols=73  Identities=11%  Similarity=0.092  Sum_probs=42.8

Q ss_pred             CCceEEEEcCCCC--hHHHHHHHHHhCCCCCEEEEEecCC--cccHHHHhccccCCCcEEEEecCCccccccCCCCEEEE
Q 022263           27 PDRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (300)
Q Consensus        27 ~~~KI~IIGaaG~--VG~~~a~~L~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi  102 (300)
                      ...||+++|=..+  |..+++..+...+. .++++.-...  ......+..+.. ...+..   ++|+++++++||+|..
T Consensus         3 ~gl~i~~vGD~~nsrv~~Sli~~l~~~~~-~~~~~~~P~~~~~~~~~~~~~~~~-~~~~~~---~~d~~~a~~~aDvvy~   77 (160)
T d1ekxa2           3 DNLHVAMVGDLKYGRTVHSLTQALAKFDG-NRFYFIAPDALAMPQYILDMLDEK-GIAWSL---HSSIEEVMAEVDILYM   77 (160)
T ss_dssp             SSCEEEEESCTTTCHHHHHHHHHHTTSSS-CEEEEECCGGGCCCHHHHHHHHHT-TCCEEE---CSCSTTTGGGCSEEEE
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHHHHcCC-CeEEeeccchhhhhHHHHHHHhhh-cccccc---ccCHHHHhCcCceEEe
Confidence            3569999995233  77777776665542 2566665432  122222332222 123443   4688899999999887


Q ss_pred             cC
Q 022263          103 PA  104 (300)
Q Consensus       103 ~a  104 (300)
                      +-
T Consensus        78 ~~   79 (160)
T d1ekxa2          78 TR   79 (160)
T ss_dssp             CC
T ss_pred             ec
Confidence            63

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=87.57  E-value=0.13  Score=38.30  Aligned_cols=88  Identities=14%  Similarity=0.168  Sum_probs=50.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc-ccHHHHhccccCCCcEEEEecCCcccccc-CCCCEEEEcCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPAG  105 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~~a~-~~aDiVIi~ag  105 (300)
                      +.+|+|+|| |+.|..++..+....-+.-+.++|-++. .|..  +.      .+..+. .+++++.. +..++++++..
T Consensus         3 ~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~--I~------Gi~V~~-~~~l~~~~~~~i~iai~~i~   72 (126)
T d2dt5a2           3 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGRP--VR------GGVIEH-VDLLPQRVPGRIEIALLTVP   72 (126)
T ss_dssp             CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCE--ET------TEEEEE-GGGHHHHSTTTCCEEEECSC
T ss_pred             CceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCE--EC------CEEEec-HHHHHHHHhhcccEEEEeCC
Confidence            458999996 9999999876544433456788887653 2221  11      233332 23343333 34566666532


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEE
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~v  141 (300)
                                      .+-.++++..+.+++-+++.
T Consensus        73 ----------------~~~~~~I~d~l~~~gIk~I~   92 (126)
T d2dt5a2          73 ----------------REAAQKAADLLVAAGIKGIL   92 (126)
T ss_dssp             ----------------HHHHHHHHHHHHHHTCCEEE
T ss_pred             ----------------HHHHHHHHHHHHHcCCCEEe
Confidence                            13346677777777755543

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=87.43  E-value=0.35  Score=34.94  Aligned_cols=37  Identities=14%  Similarity=0.160  Sum_probs=27.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhC-CCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~-~~~~el~L~D~~~   64 (300)
                      .|.+|+|||| |++|.-+|..|... ....++.+++..+
T Consensus        17 ~p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          17 APKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CCSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             cCCeEEEECC-ChHHHHHHHHhHhhcccccccceecccc
Confidence            4569999996 99999998765542 2223899998743

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=86.73  E-value=0.38  Score=37.93  Aligned_cols=71  Identities=11%  Similarity=0.225  Sum_probs=45.2

Q ss_pred             CCceEEEEcCCC--ChHHHHHHHHHhCCCCCEEEEEecCCc---ccH---HHHhccccCCCcEEEEecCCccccccCCCC
Q 022263           27 PDRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIANT---PGV---AADVGHINTRSEVAGYMGNDQLGQALEDSD   98 (300)
Q Consensus        27 ~~~KI~IIGaaG--~VG~~~a~~L~~~~~~~el~L~D~~~~---~g~---~~dl~~~~~~~~v~~~~~t~d~~~a~~~aD   98 (300)
                      +..||+++|= |  +|..+++..+..-|.  +++++-....   ...   +.+.... ....+..   ++|.+++++++|
T Consensus         4 ~~l~i~~vGD-~~nnv~~Sli~~~~~~g~--~l~~~~P~~~~~~~~~~~~~~~~~~~-~g~~~~~---~~d~~~a~~~aD   76 (183)
T d1duvg2           4 NEMTLVYAGD-ARNNMGNSMLEAAALTGL--DLRLVAPQACWPEAALVTECRALAQQ-NGGNITL---TEDVAKGVEGAD   76 (183)
T ss_dssp             GGCEEEEESC-TTSHHHHHHHHHHHHHCC--EEEEECCGGGCCCHHHHHHHHHHHHH-TTCEEEE---ESCHHHHHTTCS
T ss_pred             CCCEEEEEcC-CccHHHHHHHHHHHHcCC--EEEEEechHhhhhHHHHHHHHHHHHh-cCCceEE---EechhhccccCC
Confidence            4579999994 5  577888777777777  8999876431   111   1111111 1123443   367889999999


Q ss_pred             EEEEcC
Q 022263           99 VVIIPA  104 (300)
Q Consensus        99 iVIi~a  104 (300)
                      +|....
T Consensus        77 vvyt~~   82 (183)
T d1duvg2          77 FIYTDV   82 (183)
T ss_dssp             EEEECC
T ss_pred             EEEEEe
Confidence            988764

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.65  E-value=0.21  Score=39.31  Aligned_cols=31  Identities=16%  Similarity=0.365  Sum_probs=27.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~   62 (300)
                      .+|+|||| |..|...|..+++.++  +++++|.
T Consensus         6 ~~VvIIGg-GpaGl~aA~~~ar~g~--~v~vie~   36 (192)
T d1vdca1           6 TRLCIVGS-GPAAHTAAIYAARAEL--KPLLFEG   36 (192)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CCEEECC
T ss_pred             ceEEEECC-CHHHHHHHHHHHHcCC--cEEEEEe
Confidence            58999996 9999999999999887  7888875

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.53  E-value=1.2  Score=33.52  Aligned_cols=35  Identities=31%  Similarity=0.490  Sum_probs=28.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      +.-+|.|.|+ |.+|...+..+...+.  +++..|.++
T Consensus        27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~--~v~~~~~~~   61 (168)
T d1rjwa2          27 PGEWVAIYGI-GGLGHVAVQYAKAMGL--NVVAVDIGD   61 (168)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCEEEEeec-ccchhhhhHHHhcCCC--eEeccCCCH
Confidence            3448999995 9999988888887776  888888754

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=86.49  E-value=0.37  Score=39.36  Aligned_cols=36  Identities=19%  Similarity=0.249  Sum_probs=30.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccH
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV   68 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~   68 (300)
                      .|.|||| |..|...|..|++.++  ++.|+|..+..+.
T Consensus         6 DViIIGa-G~aGl~aA~~la~~G~--~V~vlEk~~~~G~   41 (253)
T d2gqfa1           6 ENIIIGA-GAAGLFCAAQLAKLGK--SVTVFDNGKKIGR   41 (253)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSSSCH
T ss_pred             cEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCCCCCC
Confidence            5999996 9999999999999997  8999998654443

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.28  E-value=1.8  Score=34.10  Aligned_cols=110  Identities=17%  Similarity=0.148  Sum_probs=56.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhccccCCCcEEEEecCCccccc------cCCCCE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQA------LEDSDV   99 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~t~d~~~a------~~~aDi   99 (300)
                      +.-.|.|+|| |.+|...+..+...+ ...|+..|.++.+- .+.++-   .  .........++.+.      =.++|+
T Consensus        25 ~G~tVlV~Ga-G~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~G---a--~~~~~~~~~~~~~~i~~~t~g~g~D~   97 (195)
T d1kola2          25 PGSTVYVAGA-GPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQG---F--EIADLSLDTPLHEQIAALLGEPEVDC   97 (195)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTT---C--EEEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhcc---c--cEEEeCCCcCHHHHHHHHhCCCCcEE
Confidence            3448999996 999987777666655 34899999865321 222221   1  11111111222221      147999


Q ss_pred             EEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       100 VIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      +|.+.|.+........-.-....+.+.+..+   -..|.+.++++.-
T Consensus        98 vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~---~~r~gG~v~~~G~  141 (195)
T d1kola2          98 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQ---VTRVAGKIGIPGL  141 (195)
T ss_dssp             EEECCCTTCBCSSTTGGGSBCTTHHHHHHHH---HEEEEEEEEECSC
T ss_pred             EEECccccccCCcccceeecCcHHHHHHHHH---HHhcCCEEEEeee
Confidence            9999885432111100001112233333333   3348888887753

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=86.19  E-value=0.33  Score=38.52  Aligned_cols=32  Identities=16%  Similarity=0.152  Sum_probs=28.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      -|.|||| |+.|.+.|..+++.|+  ++.|+|..+
T Consensus         4 DvvVIG~-G~aG~~aA~~a~~~G~--kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGG-GSGGIASINRAAMYGQ--KCALIEAKE   35 (217)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            4899996 9999999999999988  899998754

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=85.99  E-value=0.32  Score=40.44  Aligned_cols=32  Identities=25%  Similarity=0.378  Sum_probs=28.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHh-CCCCCEEEEEecCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN   64 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~-~~~~~el~L~D~~~   64 (300)
                      -|+|||| |..|...|..|++ .|+  ++.++|...
T Consensus        35 DViVIGa-GpaGL~aA~~LA~~~G~--~V~vlE~~~   67 (278)
T d1rp0a1          35 DVVVVGA-GSAGLSAAYEISKNPNV--QVAIIEQSV   67 (278)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTSTTS--CEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHccCC--eEEEEecCC
Confidence            5999996 9999999999987 488  899999754

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=85.61  E-value=0.57  Score=35.74  Aligned_cols=34  Identities=18%  Similarity=0.288  Sum_probs=26.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~   62 (300)
                      ..+|+|||| |++|..+|..|...+.-..|.+.+.
T Consensus         3 ~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           3 NDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecC
Confidence            358999996 9999999999998876335555554

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.48  E-value=0.63  Score=35.96  Aligned_cols=96  Identities=20%  Similarity=0.294  Sum_probs=54.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcc-cHHHHhccccCCCcEEEEecCCcccccc-----CCCCEE
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQAL-----EDSDVV  100 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~~a~-----~~aDiV  100 (300)
                      +..+|.|+|+ |.+|...+..+...+. ..++..|.++.+ ..+.++-   .. .+-.. ...|..+.+     .+.|+|
T Consensus        28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~G---a~-~~i~~-~~~~~~~~i~~~t~gg~D~v  100 (174)
T d1f8fa2          28 PASSFVTWGA-GAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQLG---AT-HVINS-KTQDPVAAIKEITDGGVNFA  100 (174)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHHT---CS-EEEET-TTSCHHHHHHHHTTSCEEEE
T ss_pred             CCCEEEEeCC-CHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHcC---Ce-EEEeC-CCcCHHHHHHHHcCCCCcEE
Confidence            3458999996 9999998887776664 367788875432 2233332   11 11111 122332222     248999


Q ss_pred             EEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCC
Q 022263          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (300)
Q Consensus       101 Ii~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (300)
                      |.+.|.+               ..+.+.   ++-..|.+.+++++.|
T Consensus       101 id~~G~~---------------~~~~~~---~~~~~~~G~i~~~G~~  129 (174)
T d1f8fa2         101 LESTGSP---------------EILKQG---VDALGILGKIAVVGAP  129 (174)
T ss_dssp             EECSCCH---------------HHHHHH---HHTEEEEEEEEECCCC
T ss_pred             EEcCCcH---------------HHHHHH---HhcccCceEEEEEeec
Confidence            9997742               222222   2334578888887643

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.35  E-value=0.49  Score=34.20  Aligned_cols=37  Identities=22%  Similarity=0.272  Sum_probs=27.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEecCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIAN   64 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~~~   64 (300)
                      .+.+|+|||| |++|.-+|..|...+. -.++.|++..+
T Consensus        19 ~p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          19 PPRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CCSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             cCCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            4569999996 9999999876654332 23899998743

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=85.29  E-value=2.4  Score=32.67  Aligned_cols=36  Identities=25%  Similarity=0.380  Sum_probs=29.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT   65 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~   65 (300)
                      .-.|+|+|+ |.+|...+..+...+. .+|+.+|.++.
T Consensus        30 g~tVlI~G~-GgvGl~ai~~ak~~G~-~~Vi~vd~~~~   65 (176)
T d1d1ta2          30 GSTCVVFGL-GGVGLSVIMGCKSAGA-SRIIGIDLNKD   65 (176)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGG
T ss_pred             CCEEEEECC-CchhHHHHHHHHHcCC-ceEEEecCcHH
Confidence            347999996 9999998888887764 48999999654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.16  E-value=0.4  Score=38.11  Aligned_cols=32  Identities=19%  Similarity=0.211  Sum_probs=28.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      -|+|||| |..|.+.|..+++.+.  ++.|+|...
T Consensus         7 DviVIG~-GpAGl~aA~~aa~~G~--kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGG-GPAGYVAAIKAAQLGF--NTACVEKRG   38 (233)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            4899996 9999999999999888  899999754

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.96  E-value=0.63  Score=35.91  Aligned_cols=96  Identities=19%  Similarity=0.192  Sum_probs=53.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCccc-HHHHhccccCCCcEEEEecCCccccccCCCCEEEEcCC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~ag  105 (300)
                      +..+|.|.||+|.+|...+..+...|.  +++..+.++.+. .+.++   ... .+..+....+....-+++|+||-+.|
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~--~vi~~~~~~~~~~~~~~l---Ga~-~~i~~~~~~~~~~~~~g~D~v~d~~G  100 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGL--RVLAAASRPEKLALPLAL---GAE-EAATYAEVPERAKAWGGLDLVLEVRG  100 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTC--EEEEEESSGGGSHHHHHT---TCS-EEEEGGGHHHHHHHTTSEEEEEECSC
T ss_pred             CCCEEEEEeccccchhhhhhhhccccc--cccccccccccccccccc---ccc-eeeehhhhhhhhhccccccccccccc
Confidence            445899999889999998888888886  777777644322 22222   111 22211100011123478999988765


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 022263          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (300)
Q Consensus       106 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (300)
                      ..          +          -..++-..|.+.++.+.+|.
T Consensus       101 ~~----------~----------~~~~~~l~~~G~~v~~G~~~  123 (171)
T d1iz0a2         101 KE----------V----------EESLGLLAHGGRLVYIGAAE  123 (171)
T ss_dssp             TT----------H----------HHHHTTEEEEEEEEEC----
T ss_pred             hh----------H----------HHHHHHHhcCCcEEEEeCCC
Confidence            11          1          12244456889888886543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.94  E-value=0.4  Score=42.18  Aligned_cols=32  Identities=34%  Similarity=0.483  Sum_probs=28.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHh------CCCCCEEEEEecCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKL------NPLVSRLALYDIAN   64 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~------~~~~~el~L~D~~~   64 (300)
                      =|.|||| |..|++.|..|++      .|+  +|+|+|...
T Consensus        34 DViIVGg-GPAGlsaA~~LA~l~~~~~~Gl--~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGA-GPAGLSAATRLKQLAAQHEKDL--RVCLVEKAA   71 (380)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHHHHTTCCC--CEEEECSSS
T ss_pred             CEEEECC-CHHHHHHHHHHHhhhhhhcCCC--EEEEEcCCC
Confidence            5999996 9999999999987      788  899999853

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.60  E-value=1.4  Score=33.53  Aligned_cols=33  Identities=27%  Similarity=0.101  Sum_probs=26.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~   62 (300)
                      ..||+|||| |++|.-.|..+...+ ++.++++-+
T Consensus        45 ~~kVvVIGG-GdtA~D~A~~a~r~G-A~~V~vi~r   77 (153)
T d1gtea3          45 RGAVIVLGA-GDTAFDCATSALRCG-ARRVFLVFR   77 (153)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHTT-CSEEEEECS
T ss_pred             CCEEEEECC-ChhHHHHHHHHHHcC-CcceeEEEe
Confidence            458999997 999999998877765 356777755

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=83.37  E-value=0.42  Score=37.79  Aligned_cols=32  Identities=16%  Similarity=0.183  Sum_probs=28.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      =|.|||| |..|.+.|..+++.+.  +++++|..+
T Consensus         5 DvvVIGg-GpaGl~aA~~aa~~G~--kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGG-GPGGYVAAIKAAQLGF--KTTCIEKRG   36 (221)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            4899996 9999999999999887  899999754

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=83.10  E-value=0.44  Score=36.47  Aligned_cols=30  Identities=23%  Similarity=0.371  Sum_probs=26.3

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~   62 (300)
                      -|.|||| |..|...|..+.+.++  ++.++|.
T Consensus         3 DViIIGg-GpaGl~AAi~aar~G~--~v~iie~   32 (184)
T d1fl2a1           3 DVLIVGS-GPAGAAAAIYSARKGI--RTGLMGE   32 (184)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEECS
T ss_pred             cEEEECc-CHHHHHHHHHHHHcCC--eEEEEEE
Confidence            4899996 9999999999999888  7888874

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=82.70  E-value=0.52  Score=36.20  Aligned_cols=35  Identities=31%  Similarity=0.382  Sum_probs=25.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCC-CCEEEEEec
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDI   62 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~-~~el~L~D~   62 (300)
                      +|.+|+|.|++|+||.....-+.+.+- + +|..+-.
T Consensus         1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~lsa   36 (150)
T d1r0ka2           1 QPRTVTVLGATGSIGHSTLDLIERNLDRY-QVIALTA   36 (150)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTGGGE-EEEEEEE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCCCCc-EEEEEEe
Confidence            467999999999999997776666432 2 5555544

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=81.82  E-value=0.66  Score=37.10  Aligned_cols=32  Identities=28%  Similarity=0.335  Sum_probs=28.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      -|.|||| |..|.+.|..+++.++  ++.|+|..+
T Consensus         8 DviIIG~-GPaGlsaA~~aa~~G~--~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGG-GPGGYSAAFAAADEGL--KVAIVERYK   39 (229)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence            4899996 9999999999999998  899999754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.60  E-value=2.8  Score=31.15  Aligned_cols=48  Identities=2%  Similarity=0.098  Sum_probs=31.2

Q ss_pred             cccCCCCEEEEcCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022263           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (300)
Q Consensus        92 ~a~~~aDiVIi~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (300)
                      ..++++|++++.-...      ..+    ..+-+....+.+.+++++..++++.|=+|
T Consensus        70 ~~~~~~~~~i~v~d~~------~~~----s~~~~~~~~~~i~~~~~~~~iilVgnK~D  117 (164)
T d1z2aa1          70 AYYRGAQACVLVFSTT------DRE----SFEAISSWREKVVAEVGDIPTALVQNKID  117 (164)
T ss_dssp             HHHTTCCEEEEEEETT------CHH----HHHTHHHHHHHHHHHHCSCCEEEEEECGG
T ss_pred             hhhccCceEEEEEecc------chh----hhhhcccccccccccCCCceEEEeeccCC
Confidence            4578999988874322      111    12223455667777778877888899998

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.48  E-value=0.71  Score=34.29  Aligned_cols=33  Identities=15%  Similarity=0.212  Sum_probs=25.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHh----CCCCCEEEEEecCC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKL----NPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~----~~~~~el~L~D~~~   64 (300)
                      .+|+|||| |++|.-+|..|..    .+.  ++.+++..+
T Consensus        38 k~i~IvGg-G~~G~E~A~~l~~~~~~~g~--~Vt~i~~~~   74 (137)
T d1m6ia2          38 KSITIIGG-GFLGSELACALGRKARALGT--EVIQLFPEK   74 (137)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHHHHhcCC--EEEEecccc
Confidence            48999996 9999888877753    354  899998843

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.42  E-value=1.1  Score=34.39  Aligned_cols=93  Identities=13%  Similarity=0.160  Sum_probs=53.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCcccHHHHhccccCCCcEEEEecCCcccccc------CCCCEEEE
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL------EDSDVVII  102 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~------~~aDiVIi  102 (300)
                      .+|.|.||+|.+|...+..+...+.  +++..+.++.+.  ..+...... .+-.+ .+.|+.+.+      +++|+|+-
T Consensus        27 ~~VlI~ga~g~vG~~~iqla~~~g~--~vi~~~~~~~~~--~~l~~~Ga~-~vi~~-~~~~~~~~v~~~t~~~g~d~v~d  100 (183)
T d1pqwa_          27 ERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDAKR--EMLSRLGVE-YVGDS-RSVDFADEILELTDGYGVDVVLN  100 (183)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHHHH--HHHHTTCCS-EEEET-TCSTHHHHHHHHTTTCCEEEEEE
T ss_pred             CEEEEECCCCCcccccchhhccccc--cceeeecccccc--ccccccccc-ccccC-CccCHHHHHHHHhCCCCEEEEEe
Confidence            4899999889999998887777775  666665533211  122222111 22211 123443333      57999999


Q ss_pred             cCCCCCCCCCcchhhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Q 022263          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (300)
Q Consensus       103 ~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (300)
                      ++|.                +.+.+..   +-..|++.++.+.+
T Consensus       101 ~~g~----------------~~~~~~~---~~l~~~G~~v~~G~  125 (183)
T d1pqwa_         101 SLAG----------------EAIQRGV---QILAPGGRFIELGK  125 (183)
T ss_dssp             CCCT----------------HHHHHHH---HTEEEEEEEEECSC
T ss_pred             cccc----------------hHHHHHH---HHhcCCCEEEEEcc
Confidence            8751                1222222   22347899888854

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=81.36  E-value=0.57  Score=39.11  Aligned_cols=32  Identities=25%  Similarity=0.374  Sum_probs=28.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      -|.|||+ |..|.+.|..|++.|.  +++|+|...
T Consensus        18 DVlVIG~-G~aGl~aA~~la~~G~--~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGS-GGAGFSAAISATDSGA--KVILIEKEP   49 (308)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            5999996 9999999999999997  899998754

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.28  E-value=1  Score=35.46  Aligned_cols=65  Identities=22%  Similarity=0.323  Sum_probs=42.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC-cccHHHHhccccCCCcEEEEecCCccccccCCCCEEEEcC
Q 022263           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (300)
Q Consensus        27 ~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVIi~a  104 (300)
                      +..+|+|||- |.-|.+-|+.|...|+  +|++ -..+ ....  +.....   ..+..    +.+||.+.||+|.+..
T Consensus        15 k~k~IaViGY-GsQG~AhAlNLrDSG~--~V~V-GLr~gs~s~--~~A~~~---Gf~v~----~~~eA~~~aDiim~L~   80 (182)
T d1np3a2          15 QGKKVAIIGY-GSQGHAHACNLKDSGV--DVTV-GLRSGSATV--AKAEAH---GLKVA----DVKTAVAAADVVMILT   80 (182)
T ss_dssp             HTSCEEEECC-SHHHHHHHHHHHHTTC--CEEE-ECCTTCHHH--HHHHHT---TCEEE----CHHHHHHTCSEEEECS
T ss_pred             CCCEEEEEee-CcHhHHHHhhhhhcCC--CEEE-EcCCCCccH--HHHhhh---ccccc----cHHHHhhhcCeeeeec
Confidence            3459999996 9999999999999998  5444 3432 1111  111111   12221    3568999999999984

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=81.25  E-value=1.7  Score=32.41  Aligned_cols=33  Identities=12%  Similarity=0.116  Sum_probs=27.3

Q ss_pred             ceEEEE--cCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           29 RKVAVL--GAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        29 ~KI~II--GaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      ..+.|+  |+ |++|..+|..|+..|.  ++.+++...
T Consensus        40 ~~vvi~d~gg-g~ig~e~A~~la~~G~--~Vtlv~~~~   74 (156)
T d1djqa2          40 KRVVILNADT-YFMAPSLAEKLATAGH--EVTIVSGVH   74 (156)
T ss_dssp             SEEEEEECCC-SSHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CceEEEecCC-ChHHHHHHHHHHHcCC--eEEEEecCC
Confidence            345454  86 9999999999999997  999998854

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=80.34  E-value=1.8  Score=32.69  Aligned_cols=70  Identities=19%  Similarity=0.239  Sum_probs=44.5

Q ss_pred             CCceEEEEcCC--CChHHHHHHHHHhCCCCCEEEEEecCCc--ccH-HHHhccccCCCcEEEEecCCccccccCCCCEEE
Q 022263           27 PDRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT--PGV-AADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (300)
Q Consensus        27 ~~~KI~IIGaa--G~VG~~~a~~L~~~~~~~el~L~D~~~~--~g~-~~dl~~~~~~~~v~~~~~t~d~~~a~~~aDiVI  101 (300)
                      ...||++||=.  +.|..+++..+...|.  ++.++-....  ... ...+...  ...+..   ++|++++++++|+|.
T Consensus         3 ~gl~i~~vGD~~~srV~~Sli~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~--~~~~~~---~~d~~~av~~aDvvy   75 (157)
T d1ml4a2           3 DGLKIGLLGDLKYGRTVHSLAEALTFYDV--ELYLISPELLRMPRHIVEELREK--GMKVVE---TTTLEDVIGKLDVLY   75 (157)
T ss_dssp             SSEEEEEESCTTTCHHHHHHHHHGGGSCE--EEEEECCGGGCCCHHHHHHHHHT--TCCEEE---ESCTHHHHTTCSEEE
T ss_pred             CCCEEEEEcCCccChHHHHHHHHHHhcCC--cEEEEccchhhcchHHHHHHHhh--ccccee---ecCHHHhhccCcEEE
Confidence            45799999942  5688888888877776  7888765321  111 1122211  123433   357889999999887


Q ss_pred             Ec
Q 022263          102 IP  103 (300)
Q Consensus       102 i~  103 (300)
                      .+
T Consensus        76 ~~   77 (157)
T d1ml4a2          76 VT   77 (157)
T ss_dssp             EC
T ss_pred             ee
Confidence            76

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=80.28  E-value=3.2  Score=31.44  Aligned_cols=35  Identities=26%  Similarity=0.474  Sum_probs=26.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCC
Q 022263           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (300)
Q Consensus        28 ~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~   64 (300)
                      .-.|.|+|+ |.+|...+..+...+. ..++..|.++
T Consensus        33 g~~vli~Ga-G~vG~~~~~~a~~~g~-~~vv~~~~~~   67 (172)
T d1h2ba2          33 GAYVAIVGV-GGLGHIAVQLLKVMTP-ATVIALDVKE   67 (172)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHCC-CEEEEEESSH
T ss_pred             CCEEEEeCC-ChHHHHHHHHHHhhcC-cccccccchh
Confidence            347999995 9999988777766553 3688888864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=80.25  E-value=2.1  Score=32.85  Aligned_cols=38  Identities=26%  Similarity=0.333  Sum_probs=29.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecCCc
Q 022263           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT   65 (300)
Q Consensus        26 ~~~~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~~~   65 (300)
                      ++.-+|+|+|+ |.+|...+..+...+. .+|+..|.++.
T Consensus        26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~-~~Vi~~d~~~~   63 (174)
T d1p0fa2          26 TPGSTCAVFGL-GGVGFSAIVGCKAAGA-SRIIGVGTHKD   63 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSCGG
T ss_pred             CCCCEEEEECC-CchhHHHHHHHHHcCC-ceeeccCChHH
Confidence            34458999996 9999998887777663 47999998654

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.22  E-value=0.8  Score=36.51  Aligned_cols=34  Identities=12%  Similarity=0.114  Sum_probs=28.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCCEEEEEecC
Q 022263           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (300)
Q Consensus        29 ~KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~~   63 (300)
                      ..+.|||| |+.|..+|..|.+.+...+|.+++.+
T Consensus         5 ~~~vIvG~-G~aG~~~A~~Lr~~~~~~~I~li~~e   38 (213)
T d1m6ia1           5 VPFLLIGG-GTAAFAAARSIRARDPGARVLIVSED   38 (213)
T ss_dssp             EEEEEESC-SHHHHHHHHHHHHHSTTCEEEEEESS
T ss_pred             CCEEEECC-cHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence            35889996 99999999999887776789999864

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=80.08  E-value=0.61  Score=35.86  Aligned_cols=32  Identities=19%  Similarity=0.181  Sum_probs=25.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCCEEEEEec
Q 022263           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (300)
Q Consensus        30 KI~IIGaaG~VG~~~a~~L~~~~~~~el~L~D~   62 (300)
                      ||.|||| |++|..+|..|...+.-.+|+++..
T Consensus         5 ~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           5 PVVVLGA-GLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CEEEECc-cHHHHHHHHHHHhcCCceEEEEEec
Confidence            6999996 9999999999988775335666543