Citrus Sinensis ID: 022282

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
MINMITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVENDEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNNSVCENDRSAADGSGKNEEEMDDSGRMVEADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSVWATT
Secondary Structure (PSIPRED)
cccccccccccccHHHcccccccccccccccccccccEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccHHHHHcHHHcccccccccccccccEEEEcccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccHcccccHHHHHcccHHcccHccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHccHHHHHHHHHHcccccccccEHHHHHHHHHHccc
Coil and Loop (DISEMBL)
minmityeqdpdVLRWGLHQLLDictlsnsgsqnvitrydrdssqvgyvrecysetelayveNDEVIAHVLQEEFSQVAAAEasgsinpekssileqdrvsplgiynnsvcendrsaadgsgkneeemddsgrmveadyqskgekveleydedNMEDLLHqldttdessvidgelgkrlnqmvpvphipkingdipspdeeiSDHQRMLDRLQLYDLvenkvqgdgncqfrslsdqlyrspehhMFVRQQVVNQLKahpeiyegyvpMAYSDYLKKMnksgewgdhvTLQAAADSVWATT
Flexible Loop (DISEMBL)
MINMITYEQDPDVLRWGLHQLLDICTlsnsgsqnvitrydrdssqvgYVRECYSETELAYVENDEVIAHVLQEEFSQVAAAEAsgsinpekssileqDRVSPLGIynnsvcendrsaadgsgkneeemddsgrmveADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSVWATT
Low Complexity Region (SEG)
MINMITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVENDEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNNSVCENDRSAADGSGKNEEEMDDSGRMVEADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSVWATT
Disordered region (IsUnstruct)
****ITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVENDEVIAHVLQEEFS*************************************************************************************************************************************DRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAA*******
Disordered Region (DISOPRED)
**NMITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVENDEVIAHVLQE***********************************************************************************************************************************HQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSVWATT
Disordered Region (DISEMBL)
MINMITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVENDEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNNSVCENDR****************GRMVEADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSVWATT
Disordered Region (DISPRO)
MINMITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVENDEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGI************************************************NMEDLLHQLDTTDESSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSVWA**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MINMITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVENDEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNNSVCENDRSAADGSGKNEEEMDDSGRMVEADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSVWATT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	300	2.2.26 [Sep-21-2011]
Q54P70	766	OTU domain-containing pro	yes	no	0.333	0.130	0.385	3e-11
Q196X6	844	Putative ubiquitin thioes	N/A	no	0.406	0.144	0.289	2e-06
Q01804	1113	OTU domain-containing pro	yes	no	0.303	0.081	0.287	4e-06
P22856	867	Putative ubiquitin thioes	N/A	no	0.283	0.098	0.307	1e-05
B2RRE7	1107	OTU domain-containing pro	yes	no	0.266	0.072	0.301	2e-05
Q9D8C3	1166	UDP-N-acetylglucosamine t	no	no	0.25	0.064	0.306	2e-05
Q08BW0	560	OTU domain-containing pro	no	no	0.26	0.139	0.294	3e-05
Q7RTX8	443	Putative HIN1-like protei	yes	no	0.303	0.205	0.276	4e-05
Q7ZX21	513	OTU domain-containing pro	N/A	no	0.32	0.187	0.252	5e-05
Q96G74	571	OTU domain-containing pro	yes	no	0.26	0.136	0.269	7e-05

>sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum GN=DDB_G0284757 PE=4 SV=2

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 9/109 (8%)

Query: 195 IPSPDEEISDHQRMLDRLQLYDLVENK-VQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVN 253
           +P   E     QR+ +RL+LY L  +K + GDGNCQ  +LSDQLY    H   VR+ +V+
Sbjct: 608 LPQSKEVQIAQQRLNERLELYMLKNSKEIPGDGNCQMHALSDQLYGDLSHSQEVRKTIVD 667

Query: 254 QLKAHPE--------IYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAAD 294
            L+ + +        I +      + DY   M+K+G WGDH+TL AAA+
Sbjct: 668 WLRKNKDFQLPNGATICQFVNTNNWDDYCNDMSKNGNWGDHLTLLAAAE 716

Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: -

>sp|Q196X6|VF232_IIV3 Putative ubiquitin thioesterase 232R OS=Invertebrate iridescent virus 3 GN=IIV3-084L PE=3 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 23/145 (15%)

Query: 169 SVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENK------V 222
           SV+D +L ++   + P+P +  +  D PS   E+  ++       L  L ++K      V
Sbjct: 540 SVVDPQLSRK--TLKPLPSL--VVTDQPSKQPELPKYKGRTPYTDLEQLAQSKGYTVKQV 595

Query: 223 QGDGNCQFRSL--SDQLYRSPEH-HMFVRQQVVNQLKAHPEIYEGYVPM----------A 269
            GDGNC FRS+  S +  R  +  H  +RQ VV+ L+ +PE  + Y+            +
Sbjct: 596 SGDGNCLFRSVCKSIRALRGEKFTHRQLRQMVVDYLRENPEFLQVYLEYVARQRDNSLPS 655

Query: 270 YSDYLKKMNKSGEWGDHVTLQAAAD 294
              YL +M+K G WGD + L+  ++
Sbjct: 656 TEQYLSEMSKCGTWGDLICLKTLSE 680

Hydrolase that can remove conjugated ubiquitin from proteins and may therefore play an important regulatory role at the level of protein turnover by preventing degradation.

Psorophora ferox (taxid: 7183)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q01804|OTUD4_HUMAN OTU domain-containing protein 4 OS=Homo sapiens GN=OTUD4 PE=1 SV=3

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 3/94 (3%)

Query: 198 PDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKA 257
           P E+ +     L +L LY  +   V  DG+C FR++++Q+  S   H+ VR   ++ L+ 
Sbjct: 18  PREDATPMDAYLRKLGLYRKL---VAKDGSCLFRAVAEQVLHSQSRHVEVRMACIHYLRE 74

Query: 258 HPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQA 291
           + E +E ++  ++ +YLK++    EW   V + A
Sbjct: 75  NREKFEAFIEGSFEEYLKRLENPQEWVGQVEISA 108

Homo sapiens (taxid: 9606)

>sp|P22856|VL96_IRV1 Putative ubiquitin thioesterase L96 OS=Tipula iridescent virus GN=L96 PE=3 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 19/104 (18%)

Query: 208 MLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPE---HHMFVRQQVVNQLKAHPEIYEG 264
           +L R + Y ++   V+GDGNC FR++   L  +      H  +R QVV  L +H E  E 
Sbjct: 599 ILARRRGYKVIP--VKGDGNCLFRAVGKSLRLNQNIKYSHEDLRAQVVTYLTSHKEFLEP 656

Query: 265 YV----------PMAYSD----YLKKMNKSGEWGDHVTLQAAAD 294
           Y+          P  Y+     Y+K ++K G WGD + L+  ++
Sbjct: 657 YLEYVTESGDTTPQEYAKNVERYIKNISKPGTWGDFICLRVLSE 700

Hydrolase that can remove conjugated ubiquitin from proteins and may therefore play an important regulatory role at the level of protein turnover by preventing degradation (By similarity). May be involved in TIV genomic DNA packaging in a manner related to the Gag polyproteins of the mammalian viruses.

Tipula (taxid: 41043)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|B2RRE7|OTUD4_MOUSE OTU domain-containing protein 4 OS=Mus musculus GN=Otud4 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 209 LDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPM 268
           L +L LY  +   V  DG+C FR++++Q+  S   H+ VR   +  L+ + E +E ++  
Sbjct: 29  LRKLGLYRKL---VAKDGSCLFRAVAEQVLHSQSRHVEVRMACIRYLRENREKFEAFIEG 85

Query: 269 AYSDYLKKMNKSGEWGDHVTLQA 291
           ++ +YLK++    EW   V + A
Sbjct: 86  SFEEYLKRLENPQEWVGQVEISA 108

Mus musculus (taxid: 10090)

>sp|Q9D8C3|ALG13_MOUSE UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Mus musculus GN=Alg13 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 43/75 (57%)

Query: 217 LVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKK 276
           L    V  D +C FR++S+QL+ S  HH+ +R+  V+ +K + + +E YV  ++  YL++
Sbjct: 225 LFRKVVAKDASCLFRAISEQLFHSQIHHLQIRRACVSYMKENQQAFESYVEGSFEKYLER 284

Query: 277 MNKSGEWGDHVTLQA 291
           +    E    + L+A
Sbjct: 285 LGDPKESAGQLELKA 299

Isoform 2 may be involved in protein N-glycosylation, second step of the dolichol-linked oligosaccharide pathway (By. similarity).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 1

>sp|Q08BW0|OTU5A_DANRE OTU domain-containing protein 5-A OS=Danio rerio GN=otud5a PE=2 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 45/78 (57%)

Query: 217 LVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKK 276
            V  K++ DG C FR+++DQ+Y   + H  VR+  ++ L  + + +  YV   ++ Y+ +
Sbjct: 211 FVIKKMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINR 270

Query: 277 MNKSGEWGDHVTLQAAAD 294
             K+   G+H+ +QA A+
Sbjct: 271 KRKNNCHGNHIEMQAMAE 288

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q7RTX8|HIN1L_HUMAN Putative HIN1-like protein OS=Homo sapiens GN=HIN1L PE=5 SV=1

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 198 PDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKA 257
           P E+ +     L +L LY  +   V  DG+C FR++++Q+  S   H+ VR   ++ L+ 
Sbjct: 18  PREDATPMDAYLRKLGLYRKL---VAKDGSCLFRAVAEQVLHSQSRHVEVRMACIHCLRE 74

Query: 258 HPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQA 291
           + E +E  +  ++  YLK++    EW   + + A
Sbjct: 75  NREKFEAIIGGSFEGYLKRLENPQEWVGQMEISA 108

Homo sapiens (taxid: 9606)

>sp|Q7ZX21|OTU5A_XENLA OTU domain-containing protein 5-A OS=Xenopus laevis GN=otud5-a PE=2 SV=1

 Score = 48.5 bits (114), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 199 DEEISDHQRMLDRLQLYD---LVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQL 255
           D + ++ Q +     L D    +  +++ DG C FR+++DQ+Y   + H  VR+  ++ L
Sbjct: 145 DPDTAEQQELCFEKTLSDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYL 204

Query: 256 KAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAAD 294
             + + +  YV   ++ Y+ +  K+   G+H+ +QA A+
Sbjct: 205 MKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAE 243

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q96G74|OTUD5_HUMAN OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 45/78 (57%)

Query: 217 LVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKK 276
            +  +++ DG C FR+++DQ+Y   + H  VR+  ++ L  + + +  YV   ++ Y+ +
Sbjct: 213 FIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINR 272

Query: 277 MNKSGEWGDHVTLQAAAD 294
             K+   G+H+ +QA A+
Sbjct: 273 KRKNNCHGNHIEMQAMAE 290

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
224109808	353	predicted protein [Populus trichocarpa]	0.953	0.810	0.562	4e-84
356576239	362	PREDICTED: uncharacterized protein LOC10	0.94	0.779	0.570	2e-81
296085991	325	unnamed protein product [Vitis vinifera]	0.856	0.790	0.572	5e-81
255580215	388	cysteine-type peptidase, putative [Ricin	0.943	0.729	0.530	6e-76
297746292	354	unnamed protein product [Vitis vinifera]	0.906	0.768	0.557	9e-76
449449300	363	PREDICTED: uncharacterized protein LOC10	0.96	0.793	0.540	1e-75
225435383	353	PREDICTED: uncharacterized protein LOC10	0.906	0.770	0.557	1e-75
9955580	395	putative protein [Arabidopsis thaliana]	0.93	0.706	0.523	9e-75
18414504	345	OTU-like cysteine protease family protei	0.923	0.802	0.523	2e-74
356535617	365	PREDICTED: uncharacterized protein LOC10	0.936	0.769	0.537	2e-74

>gi|224109808|ref|XP_002315318.1| predicted protein [Populus trichocarpa] gi|222864358|gb|EEF01489.1| predicted protein [Populus trichocarpa]

 Score =  317 bits (812), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 170/302 (56%), Positives = 210/302 (69%), Gaps = 16/302 (5%)

Query: 4   MITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAY-VE 62
           MI +EQDPDV+RWGLH L+  CTL NSGS   +TR+DRD+   GYVRE Y++ E A  VE
Sbjct: 1   MIVFEQDPDVVRWGLHNLIQDCTLPNSGSCYAVTRHDRDTFNAGYVRENYNDPEYANNVE 60

Query: 63  NDEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYN---------NSVCEN 113
           ND VIA  LQEE S++A AE+ G  N E+ SI+ Q        Y+         N  CEN
Sbjct: 61  NDAVIARALQEELSRIADAESFGLNNAEQESIIMQLWPCSHEKYHEHKNSQEVTNDHCEN 120

Query: 114 DRSAADGSGKNEEEMDDSGRMVEADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDG 173
            ++  D   KN    DDS +  E    +   K E   D  NME+L    +  +E + +DG
Sbjct: 121 -KTGVDNHSKNV--ADDSSKKDETAIPTSSSKSE--EDSLNMEELAINSNLANEYA-LDG 174

Query: 174 ELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSL 233
           E+GKR++ MVP+P +PK NG+IPS D E SDHQR+LDRL++YDLVENKV GDGNCQFRSL
Sbjct: 175 EVGKRISDMVPIPLVPKTNGEIPSEDAETSDHQRLLDRLKVYDLVENKVLGDGNCQFRSL 234

Query: 234 SDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAA 293
           SDQLYRSPEHH  VR+QV++QLK+ P++YEGYVPMAY DYLKKM+K GEWGDH+TLQAAA
Sbjct: 235 SDQLYRSPEHHKLVREQVIDQLKSQPQMYEGYVPMAYDDYLKKMSKGGEWGDHITLQAAA 294

Query: 294 DS 295
           DS
Sbjct: 295 DS 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576239|ref|XP_003556241.1| PREDICTED: uncharacterized protein LOC100820379 [Glycine max]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 174/305 (57%), Positives = 213/305 (69%), Gaps = 23/305 (7%)

Query: 4   MITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVEN 63
           M T+E DPDV+RWGLH LLD+CTLS+ GS +++T+YD D S+V YV E + + E  YV+N
Sbjct: 1   MATHEMDPDVVRWGLH-LLDVCTLSHHGSPSIVTQYDPDLSRVEYVTEGFCQHE--YVDN 57

Query: 64  DEVIAHVLQEEFSQVAAAEASGSINPE----KSSILEQDRV-SPLGIYN--NSVCEN--- 113
           DE +A   QEE SQ+ +  ASG  N E    + S+  QD   S  G YN  N  C+N   
Sbjct: 58  DEAVARAYQEELSQLDSMGASGISNFENEGMQGSVYTQDWPQSSNGNYNFGNESCQNSVD 117

Query: 114 ---DRSAADGSGKNEEEMDDSGRMVEAD-YQSKGEKVELEYDEDNMEDLLHQLDTTDESS 169
              +    +  G    E ++   M E D Y S    VE+    D+  D    L+ +DESS
Sbjct: 118 ESYNMKEVENYGPTPSERENG--MHENDVYGSSSGSVEVPVISDDFWD---SLEISDESS 172

Query: 170 VIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQ 229
            +DGE+GKRLNQMVP+PH+PK N  IPS DEEISDHQR+LDRLQLYDL+E KVQGDGNCQ
Sbjct: 173 -LDGEVGKRLNQMVPIPHVPKTNEKIPSDDEEISDHQRLLDRLQLYDLIECKVQGDGNCQ 231

Query: 230 FRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTL 289
           FRSLSDQLYRSP+HH FVRQQ+V QLK++P++Y GYVPMAY DYLK M+KSGEWGDHVTL
Sbjct: 232 FRSLSDQLYRSPDHHKFVRQQIVQQLKSYPDLYAGYVPMAYIDYLKNMSKSGEWGDHVTL 291

Query: 290 QAAAD 294
           QAAAD
Sbjct: 292 QAAAD 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085991|emb|CBI31432.3| unnamed protein product [Vitis vinifera]

 Score =  306 bits (785), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 170/297 (57%), Positives = 202/297 (68%), Gaps = 40/297 (13%)

Query: 4   MITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVEN 63
           MI YEQDPDV+RWGLH LLDIC+LSN                VGY  E ++      VEN
Sbjct: 1   MIGYEQDPDVVRWGLH-LLDICSLSN----------------VGYYEEQHNS-----VEN 38

Query: 64  DEVIAHVLQEEFSQVAAAEASGSINPEK----SSILEQDRVSPLGIYNNSVCENDRSAAD 119
           DE+IAH LQEE S +AAAEASG  N  K    +SIL QD + P                 
Sbjct: 39  DEIIAHALQEELSHIAAAEASGLSNVGKDHLQASILAQDWLGP------------SKRHP 86

Query: 120 GSGKNEEEMDDSGRMVEADYQSKGEKVEL-EYDEDNMEDLLHQLDTTDESSVIDGELGKR 178
           GSG +E + D S +  EAD           E    + ED  + L+ TDES V+DGE+GKR
Sbjct: 87  GSGHDERQDDSSRKKEEADGIGVSSSCSSPEGKPLSGEDFSYSLEMTDES-VLDGEVGKR 145

Query: 179 LNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLY 238
           LNQMVPVPH+PK+NG+IPS DE  SDH+R+L+RLQLYDL E KVQGDGNCQFR+LSDQ Y
Sbjct: 146 LNQMVPVPHVPKVNGEIPSVDEATSDHERLLNRLQLYDLFELKVQGDGNCQFRALSDQFY 205

Query: 239 RSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADS 295
           R+P+HH FVR+Q+VNQLKA+P IYEGYVPMAY +YLKKM+K+GEWGDHVTLQAAAD+
Sbjct: 206 RTPDHHKFVREQIVNQLKANPRIYEGYVPMAYGEYLKKMSKNGEWGDHVTLQAAADT 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580215|ref|XP_002530938.1| cysteine-type peptidase, putative [Ricinus communis] gi|223529497|gb|EEF31453.1| cysteine-type peptidase, putative [Ricinus communis]

 Score =  290 bits (742), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 167/315 (53%), Positives = 208/315 (66%), Gaps = 32/315 (10%)

Query: 4   MITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVEN 63
           MI +EQDPDV+RWGLH L+D+C   +SG  N +T Y     QVGYV E Y+E +   VEN
Sbjct: 1   MIVHEQDPDVVRWGLHTLIDVCA-PHSGPCNSVTHYGTSECQVGYVIEGYNE-DANNVEN 58

Query: 64  DEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLG---------IYNNSVCEND 114
           D VIA  LQEE S++ AAEASG  N  + SIL Q+ V+  G          YN    E  
Sbjct: 59  DAVIARALQEELSRIDAAEASGFHNTGQESILAQNWVASPGRKDRNEGHSKYNIDADECS 118

Query: 115 RSAADGSGKNEEEMDDSGRMV-------EADYQSKGEKVELEYDEDNMEDLLHQLDTTDE 167
           +  +D S  +  E +D+ ++        E  ++S GE+         ++DL H L+  DE
Sbjct: 119 KKESDSSSNSRSEDNDAAQVSFSSPNTGEESFRSTGEEFF------RVQDLSHLLEIADE 172

Query: 168 SSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRML-------DRLQLYDLVEN 220
           S+ +DGE+GKRLNQMVPVPH+PKING+IPS DE I      L        RL+LYDLVE+
Sbjct: 173 ST-LDGEVGKRLNQMVPVPHVPKINGEIPSEDEXIFLFFLCLQLTMVEYKRLKLYDLVES 231

Query: 221 KVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKS 280
           KVQGDGNCQFR+LSDQLYRS EHH  +R++V++QLK  PE YEGYVPMAY DYLKKM+K+
Sbjct: 232 KVQGDGNCQFRALSDQLYRSAEHHKIIRERVISQLKTCPEKYEGYVPMAYGDYLKKMSKT 291

Query: 281 GEWGDHVTLQAAADS 295
           GEWGDHVTLQAAADS
Sbjct: 292 GEWGDHVTLQAAADS 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746292|emb|CBI16348.3| unnamed protein product [Vitis vinifera]

 Score =  289 bits (740), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 164/294 (55%), Positives = 197/294 (67%), Gaps = 22/294 (7%)

Query: 4   MITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVEN 63
           MITYEQDPDV+RWGL QL D    SN G    I + D       Y +E + + E + VEN
Sbjct: 1   MITYEQDPDVVRWGL-QLFDGDPFSNCGYGGTIVQNDVSYYDGPYFKEDHYDNECSNVEN 59

Query: 64  DEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNNSVCENDRSAAD---G 120
           DE+IAH LQEE SQ+A  EA+G         L  + V  L +        D+S  +   G
Sbjct: 60  DEIIAHALQEELSQLAVDEAAG---------LSHEVVEDLQVSIFPEEWPDQSMGNYGFG 110

Query: 121 SGKNEEEMDDSGRMVEADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDGELGKRLN 180
               +E+ DD G  + +   S  EK        N ED  + LD TDE + +D E+GK LN
Sbjct: 111 HESGQEDTDDMG--LSSSCSSPDEKSY------NGEDWSYSLDLTDEYA-LDDEVGKILN 161

Query: 181 QMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRS 240
           QMVPVPH+PKING+IPS DE   DHQR+LDRLQL+DLVE KVQGDGNCQFRSLSDQ+Y +
Sbjct: 162 QMVPVPHVPKINGEIPSLDEATLDHQRLLDRLQLFDLVELKVQGDGNCQFRSLSDQVYCT 221

Query: 241 PEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAAD 294
           PEHH F+RQQVVNQLK++PEIYEGYVPMAY DYL+KM+K+GEWGDHVTLQAAAD
Sbjct: 222 PEHHQFIRQQVVNQLKSYPEIYEGYVPMAYGDYLEKMSKTGEWGDHVTLQAAAD 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449300|ref|XP_004142403.1| PREDICTED: uncharacterized protein LOC101221304 [Cucumis sativus]

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 161/298 (54%), Positives = 202/298 (67%), Gaps = 10/298 (3%)

Query: 4   MITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRD--SSQVGYVRECYSETELAYV 61
           M TY+ DPDV+RWGLH LLD+CT +N GS + +T Y  D   SQV YV E Y E     +
Sbjct: 3   MATYDIDPDVMRWGLH-LLDVCTFTNDGSGSTVTEYSFDPSCSQVEYVIEGYCEPCNVNL 61

Query: 62  ENDEVIAHVLQEEFSQVAAAEASGSINPE----KSSILEQDRVSPLGIYNNSVCENDRSA 117
           ENDE +AH  QEE S++ + EASG  +      ++S+L Q+   P   +N    ++D+ +
Sbjct: 62  ENDEALAHAFQEEISRIDSIEASGVSDSRDDQMQASVLSQEWPVPSPRHNPYGFDSDQKS 121

Query: 118 ADGSGKNEEEMDDSGRMVEADYQSKGEKVELEYDEDNMEDLL-HQLDTTDESSVIDGELG 176
              +  N EE  D  R+ E D            D   +++   + L+  DESS +DGE+G
Sbjct: 122 NCVNDVNIEEPGDL-RVNEVDKMGISSSYHNAVDNPFVDECSSYSLEIIDESS-LDGEVG 179

Query: 177 KRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQ 236
           KRLNQ+VPVPH+PK    IPS DEEISDHQR+L+RLQLY+LVEN VQGDGNCQFR+LSDQ
Sbjct: 180 KRLNQIVPVPHVPKTIEKIPSADEEISDHQRLLERLQLYELVENTVQGDGNCQFRALSDQ 239

Query: 237 LYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAAD 294
           LYRSPEHH FVR+QV+ QLK   E+YEGYVPM Y +YLKKM+K GEWGDHVTLQAAAD
Sbjct: 240 LYRSPEHHDFVREQVIAQLKFCREMYEGYVPMTYEEYLKKMSKKGEWGDHVTLQAAAD 297

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435383|ref|XP_002282609.1| PREDICTED: uncharacterized protein LOC100243216 [Vitis vinifera]

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 164/294 (55%), Positives = 197/294 (67%), Gaps = 22/294 (7%)

Query: 4   MITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVEN 63
           MITYEQDPDV+RWGL QL D    SN G    I + D       Y +E + + E + VEN
Sbjct: 1   MITYEQDPDVVRWGL-QLFDGDPFSNCGYGGTIVQNDVSYYDGPYFKEDHYDNECSNVEN 59

Query: 64  DEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNNSVCENDRSAAD---G 120
           DE+IAH LQEE SQ+A  EA+G         L  + V  L +        D+S  +   G
Sbjct: 60  DEIIAHALQEELSQLAVDEAAG---------LSHEVVEDLQVSIFPEEWPDQSMGNYGFG 110

Query: 121 SGKNEEEMDDSGRMVEADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDGELGKRLN 180
               +E+ DD G  + +   S  EK        N ED  + LD TDE + +D E+GK LN
Sbjct: 111 HESGQEDTDDMG--LSSSCSSPDEKSY------NGEDWSYSLDLTDEYA-LDDEVGKILN 161

Query: 181 QMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRS 240
           QMVPVPH+PKING+IPS DE   DHQR+LDRLQL+DLVE KVQGDGNCQFRSLSDQ+Y +
Sbjct: 162 QMVPVPHVPKINGEIPSLDEATLDHQRLLDRLQLFDLVELKVQGDGNCQFRSLSDQVYCT 221

Query: 241 PEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAAD 294
           PEHH F+RQQVVNQLK++PEIYEGYVPMAY DYL+KM+K+GEWGDHVTLQAAAD
Sbjct: 222 PEHHQFIRQQVVNQLKSYPEIYEGYVPMAYGDYLEKMSKTGEWGDHVTLQAAAD 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9955580|emb|CAC05507.1| putative protein [Arabidopsis thaliana]

 Score =  286 bits (732), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 155/296 (52%), Positives = 205/296 (69%), Gaps = 17/296 (5%)

Query: 5   ITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQV-GYVRECYSETELAYVEN 63
           + YE DPD LRWGLH L ++CTL+N+GS + +TRY+       GYVRE Y++    YV+N
Sbjct: 1   MGYEPDPDALRWGLHDL-EVCTLTNAGSCSSVTRYESGGGGTQGYVREGYNQPVTGYVDN 59

Query: 64  DEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNNSVCENDRSAADGSGK 123
           D VIA   Q+E S+VA AEASG  +   +S++ QD   P     +   EN   A D + +
Sbjct: 60  DAVIAQFYQDELSRVARAEASGINSLSPTSVVAQDWPHP-----HQGQENQGEAIDITQE 114

Query: 124 NEEEMDDSGRMVE---ADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDGELGKRLN 180
           ++   + +G M +   A  + +G +     D+D+    +  ++  +ES     E+GKRLN
Sbjct: 115 SDILHNHNGNMEDKNVARIRFEGGQSSPSRDDDS----VCSVEIEEESW---SEVGKRLN 167

Query: 181 QMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRS 240
           QM+P+ H+PKING++PS DE+ISDH+R+  RLQLY LVENK++GDGNCQFRSLSDQLYRS
Sbjct: 168 QMIPIAHVPKINGELPSEDEQISDHERLFQRLQLYGLVENKIEGDGNCQFRSLSDQLYRS 227

Query: 241 PEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSV 296
           PEHH FVR+QVVNQL  + EIYEGYVPMAY+DYLK M ++GEWGDHVTLQAAAD V
Sbjct: 228 PEHHNFVREQVVNQLAYNREIYEGYVPMAYNDYLKAMKRNGEWGDHVTLQAAADLV 283

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414504|ref|NP_568136.1| OTU-like cysteine protease family protein [Arabidopsis thaliana] gi|186520008|ref|NP_001119168.1| OTU-like cysteine protease family protein [Arabidopsis thaliana] gi|21592575|gb|AAM64524.1| unknown [Arabidopsis thaliana] gi|62320580|dbj|BAD95211.1| hypothetical protein [Arabidopsis thaliana] gi|90093272|gb|ABD85149.1| At5g04250 [Arabidopsis thaliana] gi|332003335|gb|AED90718.1| OTU-like cysteine protease family protein [Arabidopsis thaliana] gi|332003336|gb|AED90719.1| OTU-like cysteine protease family protein [Arabidopsis thaliana] gi|407078853|gb|AFS88957.1| OTU-containing deubiquitinating enzyme OTU9 [Arabidopsis thaliana]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 154/294 (52%), Positives = 204/294 (69%), Gaps = 17/294 (5%)

Query: 5   ITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQV-GYVRECYSETELAYVEN 63
           + YE DPD LRWGLH L ++CTL+N+GS + +TRY+       GYVRE Y++    YV+N
Sbjct: 1   MGYEPDPDALRWGLHDL-EVCTLTNAGSCSSVTRYESGGGGTQGYVREGYNQPVTGYVDN 59

Query: 64  DEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNNSVCENDRSAADGSGK 123
           D VIA   Q+E S+VA AEASG  +   +S++ QD   P     +   EN   A D + +
Sbjct: 60  DAVIAQFYQDELSRVARAEASGINSLSPTSVVAQDWPHP-----HQGQENQGEAIDITQE 114

Query: 124 NEEEMDDSGRMVE---ADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDGELGKRLN 180
           ++   + +G M +   A  + +G +     D+D+    +  ++  +ES     E+GKRLN
Sbjct: 115 SDILHNHNGNMEDKNVARIRFEGGQSSPSRDDDS----VCSVEIEEESW---SEVGKRLN 167

Query: 181 QMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRS 240
           QM+P+ H+PKING++PS DE+ISDH+R+  RLQLY LVENK++GDGNCQFRSLSDQLYRS
Sbjct: 168 QMIPIAHVPKINGELPSEDEQISDHERLFQRLQLYGLVENKIEGDGNCQFRSLSDQLYRS 227

Query: 241 PEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAAD 294
           PEHH FVR+QVVNQL  + EIYEGYVPMAY+DYLK M ++GEWGDHVTLQAAAD
Sbjct: 228 PEHHNFVREQVVNQLAYNREIYEGYVPMAYNDYLKAMKRNGEWGDHVTLQAAAD 281

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535617|ref|XP_003536341.1| PREDICTED: uncharacterized protein LOC100811064 [Glycine max]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 165/307 (53%), Positives = 208/307 (67%), Gaps = 26/307 (8%)

Query: 4   MITYEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQVGYVRECYSETELAYVEN 63
           M  YE DPDV+RWGLH LLD CTLS+  S +++T+YD D SQV YV E + + +  YV++
Sbjct: 1   MAIYELDPDVVRWGLH-LLDDCTLSHHYSPSIVTQYDPDLSQVEYVTEGFCQHQ--YVDS 57

Query: 64  DEVIAHVLQEEFSQVAAAEASGSINPE----KSSILEQDRV-SPLGIYN--NSVCENDRS 116
           DE +A   QEE  Q+ +  ASG  N E    + S+  QD   S  G  N  N  C+N   
Sbjct: 58  DEAVAQAYQEELWQLDSMVASGISNFENEGMQGSVYTQDWPQSSNGNDNLGNESCQN--- 114

Query: 117 AADGSGKNEEEMDDSGR--------MVEADY-QSKGEKVELEYDEDNMEDLLHQLDTTDE 167
            + G   N +E+ + G         + E D   S    VE+     + +D    L+ +DE
Sbjct: 115 -SVGESYNMKEVGNYGPTPSERKNDVHENDVCGSSSGSVEVPATATS-DDFWDSLEISDE 172

Query: 168 SSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGN 227
           S  +DGE+GKRLNQMVP+PH+PK N  IPS DEEISDHQR+LDRLQLYDL+E KVQGDGN
Sbjct: 173 S--LDGEVGKRLNQMVPIPHVPKTNEKIPSDDEEISDHQRLLDRLQLYDLIECKVQGDGN 230

Query: 228 CQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHV 287
           CQFRSLSDQLYRSP+HH FVR+Q++ QLK +P++Y GYVP+AYSDYL+ M+KSGEWGDHV
Sbjct: 231 CQFRSLSDQLYRSPDHHKFVREQIIQQLKYYPDLYAGYVPLAYSDYLRNMSKSGEWGDHV 290

Query: 288 TLQAAAD 294
           TLQAAAD
Sbjct: 291 TLQAAAD 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
TAIR|locus:2146673	345	AT5G04250 [Arabidopsis thalian	0.923	0.802	0.527	1.4e-73
TAIR|locus:2142659	356	AT5G03330 [Arabidopsis thalian	0.936	0.789	0.390	1.9e-51
TAIR|locus:2078648	219	AT3G02070 [Arabidopsis thalian	0.476	0.652	0.566	9.6e-41
TAIR|locus:2091633	245	AT3G22260 [Arabidopsis thalian	0.476	0.583	0.493	1.1e-34
DICTYBASE|DDB_G0284757	766	DDB_G0284757 "OTU domain conta	0.57	0.223	0.310	7.1e-11
GENEDB_PFALCIPARUM|PF10_0308	938	PF10_0308 "OTU-like cysteine p	0.243	0.077	0.346	1.5e-07
UNIPROTKB|Q8IJ91	938	PF10_0308 "OTU-like cysteine p	0.243	0.077	0.346	1.5e-07
DICTYBASE|DDB_G0267906	438	DDB_G0267906 "OTU domain conta	0.276	0.189	0.287	2.4e-07
DICTYBASE|DDB_G0285907	537	DDB_G0285907 "OTU domain conta	0.556	0.310	0.225	1.2e-06
TAIR|locus:2155588	375	AT5G67170 [Arabidopsis thalian	0.306	0.245	0.319	1.4e-06

TAIR|locus:2146673 AT5G04250 [Arabidopsis thaliana (taxid:3702)]

 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 153/290 (52%), Positives = 202/290 (69%)

Query:     7 YEQDPDVLRWGLHQLLDICTLSNSGSQNVITRYDRDSSQV-GYVRECYSETELAYVENDE 65
             YE DPD LRWGLH L ++CTL+N+GS + +TRY+       GYVRE Y++    YV+ND 
Sbjct:     3 YEPDPDALRWGLHDL-EVCTLTNAGSCSSVTRYESGGGGTQGYVREGYNQPVTGYVDNDA 61

Query:    66 VIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNNSVCENDRSAADGSGKNE 125
             VIA   Q+E S+VA AEASG  +   +S++ QD   P   +     EN   A D + +++
Sbjct:    62 VIAQFYQDELSRVARAEASGINSLSPTSVVAQDWPHP---HQGQ--ENQGEAIDITQESD 116

Query:   126 EEMDDSGRMVEADY-QSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDGELGKRLNQMVP 184
                + +G M + +  + + E  +     D  +D +  ++  +ES     E+GKRLNQM+P
Sbjct:   117 ILHNHNGNMEDKNVARIRFEGGQSSPSRD--DDSVCSVEIEEESW---SEVGKRLNQMIP 171

Query:   185 VPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHH 244
             + H+PKING++PS DE+ISDH+R+  RLQLY LVENK++GDGNCQFRSLSDQLYRSPEHH
Sbjct:   172 IAHVPKINGELPSEDEQISDHERLFQRLQLYGLVENKIEGDGNCQFRSLSDQLYRSPEHH 231

Query:   245 MFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAAD 294
              FVR+QVVNQL  + EIYEGYVPMAY+DYLK M ++GEWGDHVTLQAAAD
Sbjct:   232 NFVREQVVNQLAYNREIYEGYVPMAYNDYLKAMKRNGEWGDHVTLQAAAD 281

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2142659 AT5G03330 [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 118/302 (39%), Positives = 182/302 (60%)

Query:     4 MITYEQDPDVLRW--GLHQLLDI---CTLSNSGSQNVITRYDRDSSQVGYVRECYSETEL 58
             M+++E++  ++ W  G H          + +   +  +  +        Y RE Y +   
Sbjct:     1 MVSHEENTSIVEWFLGPHPYTYPPYGIEMIHEDDEVAVAHHHHHHQSGEYYRE-YEDHRS 59

Query:    59 AYVENDEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDR-VSPLGIYNNSVCENDRS- 116
             + V+NDE+IA  LQ++F Q+  AE++   +  +    +Q+   +     NN    ND+S 
Sbjct:    60 SDVDNDEIIARTLQDDFLQLEIAESNDYSHQNQQQQHQQEGYTNNYSNNNNGYAWNDQSP 119

Query:   117 AADGSGK---NEEEMDDSGRMVEADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVIDG 173
             A D S +   N+ + D  GR   +D            D D   + ++  ++ D+    DG
Sbjct:   120 AVDYSSEWIGNDNDQD--GR---SDDSVNVFSCSSPSDTD---EYVYSWES-DQCDA-DG 169

Query:   174 ELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSL 233
             E G+RLNQMVP+P+IPKING+IP  +E +SDH+R+ +RL+++D  E KV GDGNCQFR+L
Sbjct:   170 EFGRRLNQMVPIPYIPKINGEIPPEEEAVSDHERLRNRLEMFDFTEVKVPGDGNCQFRAL 229

Query:   234 SDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAA 293
             +DQLY++ + H  VR+Q+V QLK+ P+ Y+GYVPM +SDYL+KM++SGEWGDHVTLQAAA
Sbjct:   230 ADQLYKTADRHKHVRRQIVKQLKSRPDSYQGYVPMDFSDYLRKMSRSGEWGDHVTLQAAA 289

Query:   294 DS 295
             D+
Sbjct:   290 DA 291

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

TAIR|locus:2078648 AT3G02070 [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 81/143 (56%), Positives = 104/143 (72%)

Query:   152 EDNMEDLLHQLDTTDESSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDR 211
             +D  +D +     ++E S +DG +G+RL+ + PVPH+P+IN  IP+ ++   DHQR+L R
Sbjct:    14 KDTEDDRMIAFMLSEEYSKLDGAVGRRLSNLAPVPHVPRINCYIPNLNDATLDHQRLLQR 73

Query:   212 LQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYS 271
             L +Y L E KV GDGNCQFR+LSDQLYRSPE+H  VR++VV QLK    +YE YVPM Y 
Sbjct:    74 LNVYGLCELKVSGDGNCQFRALSDQLYRSPEYHKQVRREVVKQLKECRSMYESYVPMKYK 133

Query:   272 DYLKKMNKSGEWGDHVTLQAAAD 294
              Y KKM K GEWGDH+TLQAAAD
Sbjct:   134 RYYKKMGKFGEWGDHITLQAAAD 156

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

TAIR|locus:2091633 AT3G22260 [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 71/144 (49%), Positives = 99/144 (68%)

Query:   151 DEDNMEDLLHQLDTTDESSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLD 210
             D D+ + +   L   DES   +G+LGKRL+ +  +PH P++N +IP  ++   DH+ +  
Sbjct:    36 DTDDDQTIARIL-AEDESLRREGKLGKRLSHLDSIPHTPRVNREIPDINDATLDHELLSG 94

Query:   211 RLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAY 270
             RL  Y L E +++GDGNCQFR+L+DQL+R+ ++H  VR+ VV QLK   ++YE YVPM Y
Sbjct:    95 RLATYGLAELQMEGDGNCQFRALADQLFRNADYHKHVRKHVVKQLKQQRKLYEEYVPMKY 154

Query:   271 SDYLKKMNKSGEWGDHVTLQAAAD 294
               Y +KM K GEWGDHVTLQAAAD
Sbjct:   155 RHYTRKMKKHGEWGDHVTLQAAAD 178

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

DICTYBASE|DDB_G0284757 DDB_G0284757 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 179 (68.1 bits), Expect = 7.1e-11, P = 7.1e-11
 Identities = 59/190 (31%), Positives = 96/190 (50%)

Query:   123 KNEEEMDDSGRMVEADYQSKGEKVELEYDEDNMED--LL--HQLDTTDE---SSVIDGEL 175
             K+ EE +   R+ E D  +K  K + +  + N     ++  H  D   E   + +++G +
Sbjct:   528 KSIEE-EKKKRIEEDDRLNKQRKQQQQQQQSNSSSPHIVGGHVQDQYSEIKTNLLLEGLV 586

Query:   176 GKRLNQMVPVPHIPKINGDIPSPD-EEIS-DHQRMLDRLQLYDLVENK-VQGDGNCQFRS 232
              K +N    +     +    P P  +E+    QR+ +RL+LY L  +K + GDGNCQ  +
Sbjct:   587 LKNMNHDASLISSNVLLNLHPLPQSKEVQIAQQRLNERLELYMLKNSKEIPGDGNCQMHA 646

Query:   233 LSDQLYRSPEHHMFVRQQVVNQLKAHPEIY--EG-----YVPMA-YSDYLKKMNKSGEWG 284
             LSDQLY    H   VR+ +V+ L+ + +     G     +V    + DY   M+K+G WG
Sbjct:   647 LSDQLYGDLSHSQEVRKTIVDWLRKNKDFQLPNGATICQFVNTNNWDDYCNDMSKNGNWG 706

Query:   285 DHVTLQAAAD 294
             DH+TL AAA+
Sbjct:   707 DHLTLLAAAE 716

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

GENEDB_PFALCIPARUM|PF10_0308 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 151 (58.2 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 26/75 (34%), Positives = 48/75 (64%)

Query:   222 VQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPM--AYSDYLKKMNK 279
             ++ DGNC FR++SDQLY   E++  +R++VV  L  + E+Y+ ++    +Y  Y+++++ 
Sbjct:    55 IRTDGNCLFRAVSDQLYNHEENYKEIRKKVVEHLLKNEELYKNFIEYDESYKSYIERISL 114

Query:   280 SGEWGDHVTLQAAAD 294
              G WG  + LQA  +
Sbjct:   115 DGTWGGQLELQAVGE 129

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IJ91 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 151 (58.2 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 26/75 (34%), Positives = 48/75 (64%)

Query:   222 VQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPM--AYSDYLKKMNK 279
             ++ DGNC FR++SDQLY   E++  +R++VV  L  + E+Y+ ++    +Y  Y+++++ 
Sbjct:    55 IRTDGNCLFRAVSDQLYNHEENYKEIRKKVVEHLLKNEELYKNFIEYDESYKSYIERISL 114

Query:   280 SGEWGDHVTLQAAAD 294
              G WG  + LQA  +
Sbjct:   115 DGTWGGQLELQAVGE 129

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0267906 DDB_G0267906 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 145 (56.1 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 25/87 (28%), Positives = 51/87 (58%)

Query:   211 RLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVP--- 267
             +L+ +  +   V GDGNC FRS++DQL  +P  H   R+ +   ++ + +++  ++    
Sbjct:    58 QLEPFGFIIKDVAGDGNCLFRSIADQLQDAPNEHRKYREAICKYIEKNKDMFAPFIDDEE 117

Query:   268 -MAYSDYLKKMNKSGEWGDHVTLQAAA 293
               ++ +Y+++M +   WG HV +QAA+
Sbjct:   118 FESFEEYIQEMREDATWGGHVEIQAAS 144

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0285907 DDB_G0285907 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 41/182 (22%), Positives = 88/182 (48%)

Query:   113 NDRSAADGSGKNEEEMDDSGRMVEADYQSKGEKVELEYDEDNMEDLLHQLDTTDESSVID 172
             N+ +  + + KN  E+ +  R   +D ++  +    EY+ ++      + D+T+ +S   
Sbjct:   132 NNNNNNNNNNKNNREIRNH-RNNHSDEENSAD----EYESNSYRHHTKKRDSTNLNSGGI 186

Query:   173 GELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRS 232
                G   N  +       IN +IP  DE+  +      +      +  K++ DGNC FRS
Sbjct:   187 SNSGGGGNGNI------NINNNIPFNDEKTFEENLKKSK----GFIVRKMKQDGNCLFRS 236

Query:   233 LSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAA 292
             ++DQ+Y   E H  VR++ ++ ++A  + +  ++   ++DY+ +      +G++  +QA 
Sbjct:   237 VADQIYGDQEMHNTVREKCMDYMEAERDHFSQFITEDFADYIARKRTDKVFGNNTEMQAM 296

Query:   293 AD 294
             A+
Sbjct:   297 AE 298

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2155588 AT5G67170 [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 31/97 (31%), Positives = 55/97 (56%)

Query:   199 DEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAH 258
             D ++S  +  LD L L  +++  V  DGNC FR+++DQL  + + H   R  +V  +  +
Sbjct:    22 DCDLSQFRAQLDALGL-KIIQ--VTADGNCFFRAIADQLEGNEDEHNKYRNMIVLYIVKN 78

Query:   259 PEIYEGYVP--MAYSDYLKKMNKSGEWGDHVTLQAAA 293
              E++E ++   + + DY K M+  G W  ++ LQAA+
Sbjct:    79 REMFEPFIEDDVPFEDYCKTMDDDGTWAGNMELQAAS 115

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	300
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	5e-21

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score = 86.0 bits (213), Expect = 5e-21
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 224 GDGNCQFRSLSDQLY--RSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSG 281
           GDGNC F ++SDQL      E H  +R+ VV  L+ + E +E ++    ++Y K ++K G
Sbjct: 2   GDGNCLFHAVSDQLGDAGRQELHDELREAVVEYLRENREDFEKFLEEDENEYYKWISKDG 61

Query: 282 EWGDHVTLQAAAD 294
            WG ++ + A A 
Sbjct: 62  AWGGNIEIFALAH 74

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	100.0
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.84
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.71
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.05
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	98.75
KOG3991	256	consensus Uncharacterized conserved protein [Funct	98.41
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.0
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	97.38

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-33  Score=270.43  Aligned_cols=287  Identities=27%  Similarity=0.330  Sum_probs=214.6

Q ss_pred             ccccCCCCeeeecccccCCCCCCCC---CCCCccceeec-CCCCccccccccccccccccccchHHHHHHHHHHHHHHHH
Q 022282            5 ITYEQDPDVLRWGLHQLLDICTLSN---SGSQNVITRYD-RDSSQVGYVRECYSETELAYVENDEVIAHVLQEEFSQVAA   80 (300)
Q Consensus         5 ~~~e~d~dv~~wgl~~l~~~~~~~~---~~~~~~~~~~d-~~~~~~~yv~e~y~~~~~~~v~~d~~ia~~~qee~s~~~~   80 (300)
                      +.++++|.+++|.|++|=+..++.-   .|.++.+.|.- -++.+.++++++|+......|.+|++||+.+|++++.++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~r~~~~~~~~~g~~~~~~~~~r~~~v~~~~~~~~~~~d~~~~~e~   80 (371)
T KOG2605|consen    1 TFREEVSGDFDWYLWDLGKTKTLGTILELGAMSHVYRRNVIDYEPFGMGTDGYNNKRYGEVDRDFMIARGHQDEVLTVED   80 (371)
T ss_pred             CCccccCchHHHHhhcCCCCcccccchhhhhccccccCCCCCcCCccceeccccCccccchhhhhhhhcccccccccccH
Confidence            3588999999999997766555432   55677777664 4556778999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCCCcccccCCC-CCCCCCCCCcccccc--cccCCCCCCc--cccccccc-ccccccCCCCccccccCCCCc
Q 022282           81 AEASGSINPEKSSILEQDRV-SPLGIYNNSVCENDR--SAADGSGKNE--EEMDDSGR-MVEADYQSKGEKVELEYDEDN  154 (300)
Q Consensus        81 ~e~~~~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~  154 (300)
                      ||.+.....-.-+++.|+-+ .+.....++.|...-  ..+.+.++.+  -...-+++ .++...+.++-+     +|.+
T Consensus        81 ~e~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~s~~~~~~~~~~~~~~~~~~~~-----~~sd  155 (371)
T KOG2605|consen   81 AEMAAICQSVLFKVLYQERFKLPSDTPCNGENSPMCSFHSRRGNESFQAASFGGLEIDLEVERNSPEWLGQ-----SPSD  155 (371)
T ss_pred             HHHhhHHhhhhhhhhhhhcccCCCCCcccccCCCCCcccccccccccccccccccccchhhhccCchhccc-----cccc
Confidence            99999998888888888843 322221111111000  0111111100  00011111 111111111111     1222


Q ss_pred             hhhhhhhhcccccccccchhhhhcccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCcEEEEecCCCchhHHHHH
Q 022282          155 MEDLLHQLDTTDESSVIDGELGKRLNQMVPVPHIPKINGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLS  234 (300)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~g~~gkrls~~~pip~~pk~ng~iPs~de~~~d~~rL~erL~~~GL~i~~V~GDGNCLFRALS  234 (300)
                      ......+...........+++|.+++.+.|++++|++++.+|+..+..++|+++.+++..+|+.+++|.+||||+|||+|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~g~~in~y~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~g~e~~Kv~edGsC~fra~a  235 (371)
T KOG2605|consen  156 PLRSVPSMEAIHARHPEAKEVGVRINDYNPKVLVPFINGLPPSEEEPQSAHERSAKRKKHFGFEYKKVVEDGSCLFRALA  235 (371)
T ss_pred             cccccccccchhhccccchhhcccccCCCccccccccccCCCchHHHHHHHHHHHHHHHHhhhhhhhcccCCchhhhccH
Confidence            22232333222222247789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCchhHHHHHHHHHHHHhhChhhhcccCCCCHHHHHHHhhcCCccchHHHHHHHHHhc
Q 022282          235 DQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSV  296 (300)
Q Consensus       235 dQL~g~q~~H~~VRk~vVdyL~~n~d~F~~fV~~~~eeYl~kMsk~GtWGg~IELqAlAdly  296 (300)
                      +|||++.+.|..+|++++++++++++.|+.|++++|..|+++|++++.||+|+|+||+|+++
T Consensus       236 DQvy~d~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~~~gnhie~Qa~a~~~  297 (371)
T KOG2605|consen  236 DQVYGDDEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRADGEPGNHIEQQAAADIY  297 (371)
T ss_pred             HHhhcCHHHHHHHHHHHHHHHhhcccccccccccchhhcccccccCCCCcchHHHhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999854

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.84  E-value=8.3e-22  Score=158.83  Aligned_cols=71  Identities=41%  Similarity=0.741  Sum_probs=66.5

Q ss_pred             cCCCchhHHHHHHHHh----cCchhHHHHHHHHHHHHh-hChhhhcccCCCCHHHHHHHhhcCCccchHHHHHHHHHhcC
Q 022282          223 QGDGNCQFRSLSDQLY----RSPEHHMFVRQQVVNQLK-AHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAADSVW  297 (300)
Q Consensus       223 ~GDGNCLFRALSdQL~----g~q~~H~~VRk~vVdyL~-~n~d~F~~fV~~~~eeYl~kMsk~GtWGg~IELqAlAdly~  297 (300)
                      ||||||||||||+||+    +++..|.+||++|++||+ +|++.|..|+..+      +|+++|+||+++||+|+|++|+
T Consensus         1 pgDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el~a~a~~~~   74 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIELQALANVLN   74 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHHHHHHHHHT
T ss_pred             CCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHHHHHHHHhC
Confidence            7999999999999999    999999999999999999 9999999988644      8999999999999999999999


Q ss_pred             CC
Q 022282          298 AT  299 (300)
Q Consensus       298 Vt  299 (300)
                      ++
T Consensus        75 ~~   76 (121)
T PF02338_consen   75 RP   76 (121)
T ss_dssp             SE
T ss_pred             Ce
Confidence            85

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=1.4e-17  Score=157.46  Aligned_cols=99  Identities=16%  Similarity=0.360  Sum_probs=89.7

Q ss_pred             hhhHHHHHHHHHhhcCcEEEEecCCCchhHHHHHHHHhcC---chhHHHHHHHHHHHHhhChhhhcccCC----------
Q 022282          201 EISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRS---PEHHMFVRQQVVNQLKAHPEIYEGYVP----------  267 (300)
Q Consensus       201 ~~~d~~rL~erL~~~GL~i~~V~GDGNCLFRALSdQL~g~---q~~H~~VRk~vVdyL~~n~d~F~~fV~----------  267 (300)
                      ...+.+.|.+.|...||..+.||.||+|||+||++||.-.   .-..+.||.++++||++|.++|.+|+.          
T Consensus       143 k~~E~~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~  222 (302)
T KOG2606|consen  143 KSMEKEKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLGP  222 (302)
T ss_pred             hhhHHHHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCCH
Confidence            3446678999999999999999999999999999999643   367899999999999999999999973          


Q ss_pred             CCHHHHHHHhhcCCccchHHHHHHHHHhcCCC
Q 022282          268 MAYSDYLKKMNKSGEWGDHVTLQAAADSVWAT  299 (300)
Q Consensus       268 ~~~eeYl~kMsk~GtWGg~IELqAlAdly~Vt  299 (300)
                      .+|..||+.|+.++.|||+|||.|||.+|.+|
T Consensus       223 ~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~P  254 (302)
T KOG2606|consen  223 EDFDKYCREIRNTAAWGGELELKALSHVLQVP  254 (302)
T ss_pred             HHHHHHHHHhhhhccccchHHHHHHHHhhccC
Confidence            14999999999999999999999999999987

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=8.2e-11  Score=110.47  Aligned_cols=83  Identities=17%  Similarity=0.381  Sum_probs=74.3

Q ss_pred             cEEEEecCCCchhHHHHHHHHhcCc-hhHHHHHHHHHHHHhhChhhhcc-cCCCCHHHHHHHhhcCCccchHHHHHHHHH
Q 022282          217 LVENKVQGDGNCQFRSLSDQLYRSP-EHHMFVRQQVVNQLKAHPEIYEG-YVPMAYSDYLKKMNKSGEWGDHVTLQAAAD  294 (300)
Q Consensus       217 L~i~~V~GDGNCLFRALSdQL~g~q-~~H~~VRk~vVdyL~~n~d~F~~-fV~~~~eeYl~kMsk~GtWGg~IELqAlAd  294 (300)
                      |.++.||.|.+|||+||++-+++.- ..-.++|+.|.+.+.+||+.|.. +++..-.+||..+.+...|||.|||..||+
T Consensus       110 l~~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS~  189 (307)
T KOG3288|consen  110 LSRRVVPDDNSCLFTAIAYVIFKQVSNRPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILSD  189 (307)
T ss_pred             eEEEeccCCcchhhhhhhhhhcCccCCCcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeehh
Confidence            5577899999999999999999853 23379999999999999999975 678899999999999999999999999999


Q ss_pred             hcCCC
Q 022282          295 SVWAT  299 (300)
Q Consensus       295 ly~Vt  299 (300)
                      .|+|-
T Consensus       190 ~ygve  194 (307)
T KOG3288|consen  190 YYGVE  194 (307)
T ss_pred             hhcee
Confidence            99873

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.75  E-value=2.7e-08  Score=90.85  Aligned_cols=54  Identities=22%  Similarity=0.419  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHhhChhhhcccCC----CCHHHHHH-HhhcCCccchHHHHHHHHHhcCCC
Q 022282          246 FVRQQVVNQLKAHPEIYEGYVP----MAYSDYLK-KMNKSGEWGDHVTLQAAADSVWAT  299 (300)
Q Consensus       246 ~VRk~vVdyL~~n~d~F~~fV~----~~~eeYl~-kMsk~GtWGg~IELqAlAdly~Vt  299 (300)
                      .+|..+..||+.|++.|++|+.    .++++||. .+...+.-++|+.|.|||+.|+|+
T Consensus       141 flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~  199 (244)
T PF10275_consen  141 FLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVP  199 (244)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCe
Confidence            5777888999999999999997    68999997 478888899999999999999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=2.5e-07  Score=86.11  Aligned_cols=55  Identities=15%  Similarity=0.349  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhhChhhhcccCC--CCHHHHHHH-hhcCCccchHHHHHHHHHhcCCC
Q 022282          245 MFVRQQVVNQLKAHPEIYEGYVP--MAYSDYLKK-MNKSGEWGDHVTLQAAADSVWAT  299 (300)
Q Consensus       245 ~~VRk~vVdyL~~n~d~F~~fV~--~~~eeYl~k-Msk~GtWGg~IELqAlAdly~Vt  299 (300)
                      +.+|..+-.+|++|+++|++||+  ++...||.. +.-...-.|||+|-||++.+++.
T Consensus       157 ~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~  214 (256)
T KOG3991|consen  157 MYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIR  214 (256)
T ss_pred             HHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCce
Confidence            45777888899999999999997  589999996 44446679999999999999874

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=1.7e-06  Score=82.77  Aligned_cols=88  Identities=17%  Similarity=0.147  Sum_probs=69.0

Q ss_pred             HhhcCcEEEEecCCCchhHHHHHHHHhcC-----chhHHHHHHHHHHHHhhChhhhcccCC-------CCHHHHHHHhhc
Q 022282          212 LQLYDLVENKVQGDGNCQFRSLSDQLYRS-----PEHHMFVRQQVVNQLKAHPEIYEGYVP-------MAYSDYLKKMNK  279 (300)
Q Consensus       212 L~~~GL~i~~V~GDGNCLFRALSdQL~g~-----q~~H~~VRk~vVdyL~~n~d~F~~fV~-------~~~eeYl~kMsk  279 (300)
                      +...+|+-..+.|||+|+|-+||+||--.     -+.-+..|-.=..|..++...|.+|.-       ..|++|++.|..
T Consensus       166 ~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~ne~~~  245 (306)
T COG5539         166 AYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVNEVLF  245 (306)
T ss_pred             HHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHHhhhcc
Confidence            34456666779999999999999999532     122455565556666777777877641       379999999999


Q ss_pred             CCccchHHHHHHHHHhcCCC
Q 022282          280 SGEWGDHVTLQAAADSVWAT  299 (300)
Q Consensus       280 ~GtWGg~IELqAlAdly~Vt  299 (300)
                      +..||..+|++|||.+|+++
T Consensus       246 ~a~~g~~~ei~qLas~lk~~  265 (306)
T COG5539         246 DASDGITIEIQQLASLLKNP  265 (306)
T ss_pred             cccccchHHHHHHHHHhcCc
Confidence            99999999999999999986

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=7.8e-05  Score=71.54  Aligned_cols=74  Identities=15%  Similarity=0.216  Sum_probs=67.3

Q ss_pred             CCCchhHHHHHHHHhcCchhHHHHHHHHHHHHhhChhhhcccCC-CCHHHHHHHhhcCCccc-hHHHHHHHHHhcCCC
Q 022282          224 GDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVP-MAYSDYLKKMNKSGEWG-DHVTLQAAADSVWAT  299 (300)
Q Consensus       224 GDGNCLFRALSdQL~g~q~~H~~VRk~vVdyL~~n~d~F~~fV~-~~~eeYl~kMsk~GtWG-g~IELqAlAdly~Vt  299 (300)
                      .|..|+|+|.+.-++.-  .-.++|..+...+.+||+.|...+. -+--.|+.++.+.-.|| |+|||.++++.|++.
T Consensus       119 ~d~srl~q~~~~~l~~a--sv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~  194 (306)
T COG5539         119 DDNSRLFQAERYSLRDA--SVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVR  194 (306)
T ss_pred             CchHHHHHHHHhhhhhh--hHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEecccccee
Confidence            57999999999999763  5689999999999999999999875 58899999999999999 999999999999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	300
3tmp_A	184	The Catalytic Domain Of Human Deubiquitinase Duba I		2e-06
3tmo_A	184	The Catalytic Domain Of Human Deubiquitinase Duba L		8e-06
3pfy_A	185	The Catalytic Domain Of Human Otud5 Length = 185		9e-06

>pdb|3TMP|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba In Complex With Ubiquitin Aldehyde Length = 184

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 45/78 (57%)
Query: 217 LVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKK 276
            +  +++ DG C FR+++DQ+Y   + H  VR+  ++ L  + + +  YV   ++ Y+ +
Sbjct: 46  FIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINR 105
Query: 277 MNKSGEWGDHVTLQAAAD 294
             K+   G+H+ +QA A+
Sbjct: 106 KRKNNCHGNHIEMQAMAE 123

>pdb|3TMO|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba Length = 184

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 225 DGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWG 284
           DG C FR+++DQ+Y   + H  VR+   + L  + + +  YV   ++ Y+ +  K+   G
Sbjct: 54  DGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTYINRKRKNNCHG 113
Query: 285 DHVTLQAAAD 294
           +H+  QA A+
Sbjct: 114 NHIEXQAXAE 123

>pdb|3PFY|A Chain A, The Catalytic Domain Of Human Otud5 Length = 185

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 225 DGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWG 284
           DG C FR+++DQ+Y   + H  VR+   + L  + + +  YV   ++ Y+ +  K+   G
Sbjct: 67  DGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTYINRKRKNNCHG 126
Query: 285 DHVTLQAAAD 294
           +H+  QA A+
Sbjct: 127 NHIEXQAXAE 136

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	300
3pfy_A	185	OTU domain-containing protein 5; structural genomi	1e-21
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	4e-21
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	3e-18
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	3e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score = 89.0 bits (220), Expect = 1e-21
 Identities = 23/97 (23%), Positives = 48/97 (49%)

Query: 198 PDEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKA 257
              E  +H            +  +++ DG C FR+++DQ+Y   + H  VR+  ++ L  
Sbjct: 40  ATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMK 99

Query: 258 HPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQAAAD 294
           + + +  YV   ++ Y+ +  K+   G+H+ +QA A+
Sbjct: 100 NADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAE 136

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 88.5 bits (219), Expect = 4e-21
 Identities = 14/79 (17%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 217 LVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIY-EGYVPMAYSDYLK 275
           L  + V  D +C F +++  +++       +R+ V  ++  +P  + +  +     DY +
Sbjct: 20  LSVHPVLDDNSCLFHAIAYGIFKQDSVRD-LREMVSKEVLNNPVKFNDAILDKPNKDYAQ 78

Query: 276 KMNKSGEWGDHVTLQAAAD 294
            + K   WG  + +   +D
Sbjct: 79  WILKMESWGGAIEIGIISD 97

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score = 79.7 bits (196), Expect = 3e-18
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 198 PDEEISDHQRMLD-RLQLYDLVE-NKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQL 255
              ++   Q + + R  + D  E  +  GDGNC + S+++    +   H      +    
Sbjct: 10  DWTQVIAGQYVSNPRFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHS--YHYIKRLT 67

Query: 256 KAHPEIYEGYVP------MAYSDYLKKMNKSGEWGDHVTLQAAAD 294
           ++    Y    P      ++  DYLK+M    EWG  +     A 
Sbjct: 68  ESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASMLAK 112

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 74.8 bits (183), Expect = 3e-16
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 8/84 (9%)

Query: 217 LVENKVQGDGNCQFRSLSDQLYRSPEHHMF------VRQQVVNQLKAHPEIYEGYVPMAY 270
               +  GDGNC + S+++    +   H +               +  PE     V ++ 
Sbjct: 31  FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPE--ARLVGLSL 88

Query: 271 SDYLKKMNKSGEWGDHVTLQAAAD 294
            DYLK+M    EWG  +     A 
Sbjct: 89  EDYLKRMLSDNEWGSTLEASMLAK 112

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 41/299 (13%), Positives = 86/299 (28%), Gaps = 93/299 (31%)

Query: 9   QDPDVLRWGLHQLLDI-C-TLSNSGSQNVITRYDRDSSQVGYVRECYSETE-----LAYV 61
           Q+            ++ C  L       + TR+ + +  +      +   +     L   
Sbjct: 254 QNAKAWN-----AFNLSCKIL-------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 62  ENDEVIAHVLQEEFSQVAAAEASGSINPEKSSILEQDRVSPLGIYNNSVCENDRSAADGS 121
           E   ++   L      +          P      E    +P  +   S+      A   S
Sbjct: 302 EVKSLLLKYLDCRPQDL----------PR-----EVLTTNPRRL---SII-----AE--S 336

Query: 122 GKNEEEMDDSGRMVEADYQSKGEKVELEY-DEDNMEDLLHQLDTTDESSVIDGELGKRLN 180
            ++     D+ + V  D  +   +  L   +      +  +L        +         
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-------SV--------- 380

Query: 181 QMVPVPHIPKINGDIPSP-------DEEISDHQRMLDRLQLYDLVENKVQGDGNCQFRSL 233
                   P  +  IP+        D   SD   ++++L  Y LVE           +  
Sbjct: 381 -------FPP-SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-----------KQP 421

Query: 234 SDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGY-VPMAY-SDYLKKMNKSGEW----GDH 286
            +     P  ++ ++ ++ N+   H  I + Y +P  + SD L        +    G H
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
3pfy_A	185	OTU domain-containing protein 5; structural genomi	99.96
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.92
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.89
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.88
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.58
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.47
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.41
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.4
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	95.77
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	95.71

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=99.96  E-value=4.1e-29  Score=220.90  Aligned_cols=95  Identities=23%  Similarity=0.499  Sum_probs=73.0

Q ss_pred             HHHHHHHH-hhcCcEEEEecCCCchhHHHHHHHHhcCchhHHHHHHHHHHHHhhChhhhcccCCCCHHHHHHHhhcCCcc
Q 022282          205 HQRMLDRL-QLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEW  283 (300)
Q Consensus       205 ~~rL~erL-~~~GL~i~~V~GDGNCLFRALSdQL~g~q~~H~~VRk~vVdyL~~n~d~F~~fV~~~~eeYl~kMsk~GtW  283 (300)
                      .+.|.+.| +.+||+++.|+|||||||||||+||++++..|..||+.||+||++|++.|.+||+++|++||++|+++++|
T Consensus        46 e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~~~m~~~~~W  125 (185)
T 3pfy_A           46 EHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCH  125 (185)
T ss_dssp             HHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-----------------
T ss_pred             HHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhCCCcc
Confidence            34555555 79999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhcCCC
Q 022282          284 GDHVTLQAAADSVWAT  299 (300)
Q Consensus       284 Gg~IELqAlAdly~Vt  299 (300)
                      ||++||+|||++|+++
T Consensus       126 Gg~iEL~AlS~~~~v~  141 (185)
T 3pfy_A          126 GNHIEMQAMAEMYNRP  141 (185)
T ss_dssp             CCHHHHHHHHHHHTSC
T ss_pred             chHHHHHHHHHhhCCc
Confidence            9999999999999986

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.92  E-value=3.7e-26  Score=204.91  Aligned_cols=86  Identities=16%  Similarity=0.288  Sum_probs=81.5

Q ss_pred             hhcCcEEEEecCCCchhHHHHHHHHhcCchhHHHHHHHHHHHHhhChhhhc-ccCCCCHHHHHHHhhcCCccchHHHHHH
Q 022282          213 QLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYE-GYVPMAYSDYLKKMNKSGEWGDHVTLQA  291 (300)
Q Consensus       213 ~~~GL~i~~V~GDGNCLFRALSdQL~g~q~~H~~VRk~vVdyL~~n~d~F~-~fV~~~~eeYl~kMsk~GtWGg~IELqA  291 (300)
                      ...||+++.|+|||||||||||+|| +++..|..||+.|++||++||+.|. .|++++|++||++|+++++|||++||+|
T Consensus        16 ~~~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~A   94 (212)
T 3by4_A           16 GENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGI   94 (212)
T ss_dssp             CCSEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHH
T ss_pred             CCCCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHH
Confidence            3568999999999999999999999 9999999999999999999999996 5678999999999999999999999999


Q ss_pred             HHHhcCCC
Q 022282          292 AADSVWAT  299 (300)
Q Consensus       292 lAdly~Vt  299 (300)
                      ||++|+++
T Consensus        95 ls~~~~~~  102 (212)
T 3by4_A           95 ISDALAVA  102 (212)
T ss_dssp             HHHHHTCE
T ss_pred             HHHHHCCC
Confidence            99999985

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.89  E-value=1.7e-23  Score=184.42  Aligned_cols=81  Identities=25%  Similarity=0.467  Sum_probs=76.3

Q ss_pred             cEEEEecCCCchhHHHHHHHHhcC-chh-----HHHHHHHHHHHHhhChhhhcccCCCCHHHHHHHhhcCCccchHHHHH
Q 022282          217 LVENKVQGDGNCQFRSLSDQLYRS-PEH-----HMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQ  290 (300)
Q Consensus       217 L~i~~V~GDGNCLFRALSdQL~g~-q~~-----H~~VRk~vVdyL~~n~d~F~~fV~~~~eeYl~kMsk~GtWGg~IELq  290 (300)
                      +.+.+|+|||||||||||+||+++ +.+     |.+||+.|++||++|++.  .+++++|++||++|+++|+|||++||+
T Consensus        31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WGg~iEL~  108 (185)
T 3phx_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS  108 (185)
T ss_dssp             EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCCBHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccCcHHHHH
Confidence            778889999999999999999998 666     999999999999999999  457899999999999999999999999


Q ss_pred             HHHHhcCCC
Q 022282          291 AAADSVWAT  299 (300)
Q Consensus       291 AlAdly~Vt  299 (300)
                      |||++|+++
T Consensus       109 Als~~~~v~  117 (185)
T 3phx_A          109 MLAKEMGIT  117 (185)
T ss_dssp             HHHHHHCCC
T ss_pred             HHHHHHCCc
Confidence            999999986

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.88  E-value=6.1e-23  Score=185.74  Aligned_cols=81  Identities=25%  Similarity=0.467  Sum_probs=76.3

Q ss_pred             cEEEEecCCCchhHHHHHHHHhcC-chh-----HHHHHHHHHHHHhhChhhhcccCCCCHHHHHHHhhcCCccchHHHHH
Q 022282          217 LVENKVQGDGNCQFRSLSDQLYRS-PEH-----HMFVRQQVVNQLKAHPEIYEGYVPMAYSDYLKKMNKSGEWGDHVTLQ  290 (300)
Q Consensus       217 L~i~~V~GDGNCLFRALSdQL~g~-q~~-----H~~VRk~vVdyL~~n~d~F~~fV~~~~eeYl~kMsk~GtWGg~IELq  290 (300)
                      +.+.+|+|||||||||||+||+++ +.+     |..||+.|++||++|++.  .+++++|++||++|+++|+|||++||+
T Consensus        31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~WGG~iEL~  108 (219)
T 3phu_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS  108 (219)
T ss_dssp             EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCCCCHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCccCCHHHHH
Confidence            778899999999999999999998 666     999999999999999999  457899999999999999999999999


Q ss_pred             HHHHhcCCC
Q 022282          291 AAADSVWAT  299 (300)
Q Consensus       291 AlAdly~Vt  299 (300)
                      |+|++|+++
T Consensus       109 AlS~~~~v~  117 (219)
T 3phu_A          109 MLAKEMGIT  117 (219)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHhCCC
Confidence            999999986

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.58  E-value=3.5e-15  Score=135.50  Aligned_cols=55  Identities=11%  Similarity=0.288  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHhhChhhhcccCCC--CHHHHHH-HhhcCCccchHHHHHHHHHhcCCC
Q 022282          245 MFVRQQVVNQLKAHPEIYEGYVPM--AYSDYLK-KMNKSGEWGDHVTLQAAADSVWAT  299 (300)
Q Consensus       245 ~~VRk~vVdyL~~n~d~F~~fV~~--~~eeYl~-kMsk~GtWGg~IELqAlAdly~Vt  299 (300)
                      ..+|..+..||++|+++|.+|+++  ++++||+ .+...++||||++|+|||+.|+|+
T Consensus       133 ~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~  190 (234)
T 1tff_A          133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIA  190 (234)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCC
Confidence            568999999999999999999975  8999999 799999999999999999999986

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.47  E-value=1.1e-13  Score=125.51  Aligned_cols=55  Identities=13%  Similarity=0.314  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHhhChhhhcccCCC--CHHHHHH-HhhcCCccchHHHHHHHHHhcCCC
Q 022282          245 MFVRQQVVNQLKAHPEIYEGYVPM--AYSDYLK-KMNKSGEWGDHVTLQAAADSVWAT  299 (300)
Q Consensus       245 ~~VRk~vVdyL~~n~d~F~~fV~~--~~eeYl~-kMsk~GtWGg~IELqAlAdly~Vt  299 (300)
                      ..+|..+..||++|++.|.+|+++  ++++||+ .+...++||||++|+|||++|+|+
T Consensus       136 ~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~  193 (234)
T 2zfy_A          136 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVS  193 (234)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCC
Confidence            478899999999999999999975  8999998 599999999999999999999986

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.41  E-value=5.1e-13  Score=125.18  Aligned_cols=55  Identities=20%  Similarity=0.329  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHhhChhhhcccCC--CCHHHHHH-HhhcCCccchHHHHHHHHHhcCCC
Q 022282          245 MFVRQQVVNQLKAHPEIYEGYVP--MAYSDYLK-KMNKSGEWGDHVTLQAAADSVWAT  299 (300)
Q Consensus       245 ~~VRk~vVdyL~~n~d~F~~fV~--~~~eeYl~-kMsk~GtWGg~IELqAlAdly~Vt  299 (300)
                      ..||..+..||++|+++|.+|+.  +++++||+ .+...++||||++|+|||+.|+|+
T Consensus       171 ~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~  228 (284)
T 4dhi_B          171 MFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTR  228 (284)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCc
Confidence            56888999999999999999996  48999999 799999999999999999999986

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.40  E-value=4.8e-13  Score=129.16  Aligned_cols=56  Identities=13%  Similarity=0.297  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHhhChhhhcccCCC--CHHHHHH-HhhcCCccchHHHHHHHHHhcCCC
Q 022282          244 HMFVRQQVVNQLKAHPEIYEGYVPM--AYSDYLK-KMNKSGEWGDHVTLQAAADSVWAT  299 (300)
Q Consensus       244 H~~VRk~vVdyL~~n~d~F~~fV~~--~~eeYl~-kMsk~GtWGg~IELqAlAdly~Vt  299 (300)
                      ...+|..+..||+.|+++|.+|+++  ++++||+ .|...++||||++|+|||+.|+|+
T Consensus       300 v~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~  358 (399)
T 4ddg_A          300 VVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVS  358 (399)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCc
Confidence            4568999999999999999999975  7999999 899999999999999999999986

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=95.77  E-value=0.018  Score=56.91  Aligned_cols=84  Identities=11%  Similarity=0.149  Sum_probs=65.1

Q ss_pred             CcEEEEecCCCchhHHHHHHHHhcCchhHHHHHHHHHHHHhhChhhhc----------------ccC--C----CCHHHH
Q 022282          216 DLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYE----------------GYV--P----MAYSDY  273 (300)
Q Consensus       216 GL~i~~V~GDGNCLFRALSdQL~g~q~~H~~VRk~vVdyL~~n~d~F~----------------~fV--~----~~~eeY  273 (300)
                      .|......||||||.+|+|..++|-++....||+.+.+-|++....|.                .|.  +    .+|+.-
T Consensus       188 rL~pL~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~i  267 (454)
T 3zrh_A          188 RLYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFI  267 (454)
T ss_dssp             CEEEBCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHH
T ss_pred             ceeEeeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHH
Confidence            477788999999999999999999999999999999998886533331                122  1    245555


Q ss_pred             HHHhhcCCccchHHHHHHHHHhcCCC
Q 022282          274 LKKMNKSGEWGDHVTLQAAADSVWAT  299 (300)
Q Consensus       274 l~kMsk~GtWGg~IELqAlAdly~Vt  299 (300)
                      +...+.+|+==.++-+.+||+++..|
T Consensus       268 v~~As~Pg~sLEeiHIFvLAhVLRRP  293 (454)
T 3zrh_A          268 LSLASQPGASLEQTHIFVLAHILRRP  293 (454)
T ss_dssp             HHHTTSTTCCCCHHHHHHHHHHTTSC
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhcCC
Confidence            66667777766789999999998764

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=95.71  E-value=0.006  Score=59.28  Aligned_cols=44  Identities=27%  Similarity=0.539  Sum_probs=39.9

Q ss_pred             CcEEEEecCCCchhHHHHHHHHhcCchhHHHHHHHHHHHHhhCh
Q 022282          216 DLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHP  259 (300)
Q Consensus       216 GL~i~~V~GDGNCLFRALSdQL~g~q~~H~~VRk~vVdyL~~n~  259 (300)
                      .|......||||||.+|+|..++|-++....+|+...+-|++..
T Consensus       111 rL~pL~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~  154 (390)
T 3dkb_A          111 KLVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETD  154 (390)
T ss_dssp             CEEEBCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSC
T ss_pred             ceEEEEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhch
Confidence            47778899999999999999999999999999999998888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	300
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	7e-04

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 7e-04
 Identities = 10/89 (11%), Positives = 28/89 (31%), Gaps = 4/89 (4%)

Query: 210 DRLQLYDLVENKVQGDGNCQ-FRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVPM 268
           +    +  V   V+ DG+      + +    S     F+R      ++   + +  ++  
Sbjct: 91  NFFNAFYSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDE 150

Query: 269 AYS---DYLKKMNKSGEWGDHVTLQAAAD 294
                     ++       DH+ + A + 
Sbjct: 151 EMDIKDFCTHEVEPMATECDHIQITALSQ 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	300
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.52

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.1e-14  Score=128.24  Aligned_cols=54  Identities=13%  Similarity=0.335  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHhhChhhhcccCC--CCHHHHHHH-hhcCCccchHHHHHHHHHhcCCC
Q 022282          246 FVRQQVVNQLKAHPEIYEGYVP--MAYSDYLKK-MNKSGEWGDHVTLQAAADSVWAT  299 (300)
Q Consensus       246 ~VRk~vVdyL~~n~d~F~~fV~--~~~eeYl~k-Msk~GtWGg~IELqAlAdly~Vt  299 (300)
                      .+|..+..||++|++.|.+|+.  +++++||.+ |.+.++|||++||+|+|++|+++
T Consensus       128 ~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~  184 (228)
T d1tffa_         128 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIA  184 (228)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCC
Confidence            4799999999999999999995  579999986 89999999999999999999986