Citrus Sinensis ID: 022303

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MERTRSSRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLPL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccEEEEEEccccccEEEEEEcccEEEEEcccccEEEEEccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEccccEEEEccccccccEEEEEEEcccEEEEccccccEEEEEcccccEEEEEccccccEEEEEEccccEEEEEcccccEEEEccccccEEEEEEcccccccEEEEEEcccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccHcccccccccHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccEEEEEEEEccccEEEEEEcccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccEEEEEEccccEEEcccccccEEEEEEEEEcccEEEEEcccccEEEEEEcccccEHEEEcccccEEEEEEcccEEEEEEcccccEEEEEccccccccEEccccccccEEEEEEcccccEEEEEEEccc
Coil and Loop (DISEMBL)
mertrssrrspppkkrsskpratiesLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKlhgfsntsgssMRLHLEELAMKHHRFALeegrididqwkahsvgvdqcrmkrgliltgvGDKVMRLWSLegykcveeyslpnaaslvdfdfdeskivgligtriciwrrnglrsvfpsregtfmkglcmryfdpeavvgcedgtARVFDMYSRKCSQIirmhcapvtslslsedQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLPL
Flexible Loop (DISEMBL)
mertrssrrspppkkrsskpratieslNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHsvgvdqcrmkrgliltgvgdkVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGligtriciwrrnglrsvfpsrEGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLPL
Low Complexity Region (SEG)
MERTrssrrspppkkrsskprATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQliisgsslgsiaisglssDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLPL
Disordered region (IsUnstruct)
*************************SLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL**
Disordered Region (DISOPRED)
************************ESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYC******************ELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLPL
Disordered Region (DISEMBL)
*********************ATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLPL
Disordered Region (DISPRO)
*********************ATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFS**SGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLPL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERTRSSRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	299	2.2.26 [Sep-21-2011]
Q9SV01	454	F-box/WD-40 repeat-contai	yes	no	0.976	0.643	0.551	4e-91
Q2H139	657	Mitochondrial division pr	N/A	no	0.498	0.226	0.260	2e-06
A7ETB3	667	Mitochondrial division pr	N/A	no	0.451	0.202	0.26	1e-05
P87053	605	F-box/WD repeat-containin	yes	no	0.464	0.229	0.264	9e-05
Q58D00	454	F-box/WD repeat-containin	yes	no	0.648	0.427	0.240	0.0002
Q09990	665	F-box/WD repeat-containin	yes	no	0.575	0.258	0.247	0.0002
Q9UKT8	454	F-box/WD repeat-containin	yes	no	0.648	0.427	0.240	0.0002
B2RZ17	454	F-box/WD repeat-containin	yes	no	0.648	0.427	0.235	0.0005
Q54KL5	335	WD repeat-containing prot	no	no	0.244	0.217	0.298	0.0005
Q60584	422	F-box/WD repeat-containin	yes	no	0.648	0.459	0.235	0.0005

>sp|Q9SV01|FBW4_ARATH F-box/WD-40 repeat-containing protein At3g52030 OS=Arabidopsis thaliana GN=At3g52030 PE=2 SV=2

 Score =  334 bits (857), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 177/321 (55%), Positives = 217/321 (67%), Gaps = 29/321 (9%)

Query: 1   MERTRSSRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINR 60
           M RT +   S   K R   P  +IESL+ DI+C+IFS L  FDLV C+ VC SWNA+I R
Sbjct: 1   MGRTETGDESSARKMRRKVP-TSIESLDADILCIIFSFLDLFDLVHCTVVCNSWNAVIKR 59

Query: 61  CKLLQLLYCKLHGFSNTSGSSM-------RLHLEELAMKHHRFALEEGRIDIDQWKAHSV 113
            KLLQ    K+H   + S SS         + +E+ AMKHH+ AL  GRI+I++W+AHS 
Sbjct: 60  LKLLQASCRKMHHLGSDSPSSSTSLDRPAEIDVEDFAMKHHKMALLRGRIEIERWEAHSH 119

Query: 114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLI--- 170
            V QCRMK+GL+LTGVGDKVMRLWSL+ YKC+EEYSLP+A+SL+DFDFDESK + ++   
Sbjct: 120 RVSQCRMKKGLLLTGVGDKVMRLWSLKSYKCMEEYSLPDASSLIDFDFDESKKLEVVSLA 179

Query: 171 ------------------GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
                             GTRI IWRRNG RS+FPSR GTF KGLCMRY DPEAVVGCED
Sbjct: 180 WEYFDSVVVVVVEIVGLVGTRISIWRRNGQRSIFPSRAGTFPKGLCMRYIDPEAVVGCED 239

Query: 213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRS 272
           GTARVFDMYS+ CSQIIR    P+T LSLS++QL +SGSSLG + +S    DQ VATL+S
Sbjct: 240 GTARVFDMYSKTCSQIIRTQGGPITCLSLSDNQLFLSGSSLGRVTVSDPLMDQPVATLKS 299

Query: 273 TDCTGHIICLMYPQFLHMLFF 293
           T   G I  + + Q  ++ F 
Sbjct: 300 TITAGGIQTICFNQGTNLAFI 320

Arabidopsis thaliana (taxid: 3702)

>sp|Q2H139|MDV1_CHAGB Mitochondrial division protein 1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=MDV1 PE=3 SV=2

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 16/165 (9%)

Query: 109 KAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVG 168
           +AH   +     +  ++++G  DK +R W LE  +CV+   +  AA+             
Sbjct: 434 EAHLDEITALHFRNNVLVSGSADKTLRQWDLEKGRCVQTLDVMWAAAQ----------AS 483

Query: 169 LIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI 228
            + T    WR+    S  P     F+  L  + F+     G  DG  R++D+ S + S+ 
Sbjct: 484 ALSTSDSTWRQT---SRAPDTAADFVGAL--QVFESALACGTADGMVRLWDLRSGQVSRS 538

Query: 229 IRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRST 273
           +  H  PVT L   +D  +++GS   SI I  L +      LR+T
Sbjct: 539 LVGHTGPVTCLQF-DDVHLVTGSLDRSIRIWDLRTGSSTTPLRTT 582

Involved in mitochondrial fission. Acts as an adapter protein required to form mitochondrial fission complexes. Formation of these complexes is required to promote constriction and fission of the mitochondrial compartment at a late step in mitochondrial division.

Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901)

>sp|A7ETB3|MDV1_SCLS1 Mitochondrial division protein 1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=mdv1 PE=3 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 15/150 (10%)

Query: 109 KAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVG 168
           +AH   V     +   +++G  DK +R W LE  +CV+   +  AA+         +   
Sbjct: 441 EAHVDEVTALHFRGDTLISGSADKTLRQWDLEKGRCVQTLDVMWAAA---------QASA 491

Query: 169 LIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI 228
            +G+    WR+ G     P     F+    ++ FD     G  DG  R++D+ S +  + 
Sbjct: 492 TMGSTEGTWRQTGR---LPDATADFVG--AVQVFDAALACGTADGMVRLWDLRSGQVHRS 546

Query: 229 IRMHCAPVTSLSLSEDQLIISGSSLGSIAI 258
           +  H  PVT L   +D  +++GS   SI I
Sbjct: 547 LVGHTGPVTCLQF-DDVHLVTGSLDRSIRI 575

Involved in mitochondrial fission. Acts as an adapter protein required to form mitochondrial fission complexes. Formation of these complexes is required to promote constriction and fission of the mitochondrial compartment at a late step in mitochondrial division.

Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (taxid: 665079)

>sp|P87053|POF1_SCHPO F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pof1 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 16/155 (10%)

Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP----NAASLVDFDFD 162
           + H+  V+  R+   RGL+L+G  D  +++WSLE   C+  +S       + +L D    
Sbjct: 389 RGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSLETNTCLHTFSAHIGPVQSLALADSRLF 448

Query: 163 ESKIVGLIGTRICIWRRNGLRSVFPSREGTF-MKGLCMRYFDPEAVVGCEDGTARVFDMY 221
              + G I  +  I ++  + ++F   EG + +    +R      + G  DG  +V++  
Sbjct: 449 SCSLDGTI-KQWDIEKKKCVHTLFGHIEGVWEIAADHLRL-----ISGAHDGVVKVWEAC 502

Query: 222 SRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSI 256
             +C   ++ H  PVTS++L  D  ++SGS  G I
Sbjct: 503 --ECVHTLKNHSEPVTSVALG-DCEVVSGSEDGKI 534

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Required for the inactivation of zip1 via ubiquitination.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q58D00|FBXW2_BOVIN F-box/WD repeat-containing protein 2 OS=Bos taurus GN=FBXW2 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 14/208 (6%)

Query: 44  LVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMK---HHRFALEE 100
           L+ C  V K WN +I+ C  +    CK  G+         LH +++ +K     +   + 
Sbjct: 77  LLTCCLVSKQWNKVISACTEVWQTACKSLGWQIDDSVQDALHWKKVYLKAILRMKQLEDH 136

Query: 101 GRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD 160
              +      HS  V     K GL+ TG  D   +LW +   +CV        A++    
Sbjct: 137 EAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAV---K 193

Query: 161 FDESKIV-GLIGTRICIWR-RNGLRSV-FPSREGTFMKGLCMRYFDPEAVV--GCEDGTA 215
           FDE K+V G     +  W   +G R+  F    G       + Y D   ++  G  D T 
Sbjct: 194 FDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFS---VDYNDELDILVSGSADFTV 250

Query: 216 RVFDMYSRKCSQIIRMHCAPVTSLSLSE 243
           +V+ + +  C   +  H   VT + L +
Sbjct: 251 KVWALSAGTCLNTLTGHTEWVTKVVLQK 278

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Bos taurus (taxid: 9913)

>sp|Q09990|LIN23_CAEEL F-box/WD repeat-containing protein lin-23 OS=Caenorhabditis elegans GN=lin-23 PE=1 SV=2

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 18/190 (9%)

Query: 111 HSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYK--CVEEYSLPNAASLVDFDFDESKIVG 168
           H   V   R   G+++T   D+ + +W +   +   +    + + A++   DFD+  IV 
Sbjct: 301 HCEAVLHLRFANGIMVTCSKDRSIAVWDMVSPRDITIRRVLVGHRAAVNVVDFDDRYIVS 360

Query: 169 LIGTR-ICIWRRNGL---RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK 224
             G R I +W  + L   R++   R G      C++Y     V G  D T R++D++S  
Sbjct: 361 ASGDRTIKVWSMDTLEFVRTLAGHRRGI----ACLQYRGRLVVSGSSDNTIRLWDIHSGV 416

Query: 225 CSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDC-------TG 277
           C +++  H   V  +   E + I+SG+  G I +  L +      L S  C       TG
Sbjct: 417 CLRVLEGHEELVRCIRFDE-KRIVSGAYDGKIKVWDLQAALDPRALSSEICLCSLVQHTG 475

Query: 278 HIICLMYPQF 287
            +  L +  F
Sbjct: 476 RVFRLQFDDF 485

Functions cell autonomously to negatively regulate cell cycle progression. Required to restrain cell proliferation in response to developmental cues. Probably recognizes and binds to some proteins and promotes their ubiquitination and degradation.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9UKT8|FBXW2_HUMAN F-box/WD repeat-containing protein 2 OS=Homo sapiens GN=FBXW2 PE=1 SV=2

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 14/208 (6%)

Query: 44  LVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMK---HHRFALEE 100
           L+ C  V K WN +I+ C  +    CK  G+         LH +++ +K     +   + 
Sbjct: 77  LLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDALHWKKVYLKAILRMKQLEDH 136

Query: 101 GRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD 160
              +      HS  V     K GL+ TG  D   +LW +   +CV        A++    
Sbjct: 137 EAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAV---K 193

Query: 161 FDESKIV-GLIGTRICIWR-RNGLRSV-FPSREGTFMKGLCMRYFDPEAVV--GCEDGTA 215
           FDE K+V G     +  W   +G R+  F    G       + Y D   ++  G  D T 
Sbjct: 194 FDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFS---VDYNDELDILVSGSADFTV 250

Query: 216 RVFDMYSRKCSQIIRMHCAPVTSLSLSE 243
           +V+ + +  C   +  H   VT + L +
Sbjct: 251 KVWALSAGTCLNTLTGHTEWVTKVVLQK 278

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Homo sapiens (taxid: 9606)

>sp|B2RZ17|FBXW2_RAT F-box/WD repeat-containing protein 2 OS=Rattus norvegicus GN=Fbxw2 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 81/208 (38%), Gaps = 14/208 (6%)

Query: 44  LVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMK---HHRFALEE 100
           L+ C  V K WN +I+ C  +    CK  G+         LH +++ +K     +   + 
Sbjct: 77  LLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDALHWKKVYLKAILRMKQLEDH 136

Query: 101 GRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD 160
              +      HS  V     K GL+ TG  D   +LW +   +CV        A++    
Sbjct: 137 EAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAV---K 193

Query: 161 FDESKIV-GLIGTRICIWR-RNGLRSV-FPSREGTFMKGLCMRYFDPEAVV--GCEDGTA 215
           FDE K+V G     +  W   +G R+  F    G       + Y D   ++  G  D   
Sbjct: 194 FDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFS---VDYSDELDILVSGSADFAV 250

Query: 216 RVFDMYSRKCSQIIRMHCAPVTSLSLSE 243
           +V+ + +  C   +  H   VT + L +
Sbjct: 251 KVWALSAGTCLNTLTGHTEWVTKVVLQQ 278

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Rattus norvegicus (taxid: 10116)

>sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA 257
           F+P++   V G  D   R++D+ + +C+++I  H  PVT +  + D  L++SGS  G++ 
Sbjct: 138 FNPQSNLIVSGSFDENVRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVR 197

Query: 258 ISGLSSDQRVATLRSTD 274
           I   ++ Q + T+ + D
Sbjct: 198 IWDTTTGQLLNTISTED 214

Dictyostelium discoideum (taxid: 44689)

>sp|Q60584|FBXW2_MOUSE F-box/WD repeat-containing protein 2 OS=Mus musculus GN=Fbxw2 PE=2 SV=2

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 81/208 (38%), Gaps = 14/208 (6%)

Query: 44  LVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMK---HHRFALEE 100
           L+ C  V K WN +I+ C  +    CK  G+         LH +++ +K     +   + 
Sbjct: 77  LLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDSLHWKKVYLKAILRMKQLEDH 136

Query: 101 GRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD 160
              +      HS  V     K GL+ TG  D   +LW +   +CV        A++    
Sbjct: 137 EAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAV---K 193

Query: 161 FDESKIV-GLIGTRICIWR-RNGLRSV-FPSREGTFMKGLCMRYFDPEAVV--GCEDGTA 215
           FDE K+V G     +  W   +G R+  F    G       + Y D   ++  G  D   
Sbjct: 194 FDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFS---VDYSDELDILVSGSADFAV 250

Query: 216 RVFDMYSRKCSQIIRMHCAPVTSLSLSE 243
           +V+ + +  C   +  H   VT + L +
Sbjct: 251 KVWALSAGTCLNTLTGHTEWVTKVVLQK 278

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
297736340	435	unnamed protein product [Vitis vinifera]	0.963	0.662	0.668	1e-104
224106143	444	predicted protein [Populus trichocarpa]	0.949	0.639	0.678	1e-104
359487426	421	PREDICTED: F-box/WD-40 repeat-containing	0.906	0.643	0.691	1e-104
147777206	471	hypothetical protein VITISV_013775 [Viti	0.966	0.613	0.595	3e-99
334185911	433	F-box/WD-40 repeat-containing protein [A	0.976	0.674	0.603	2e-95
356539142	444	PREDICTED: F-box/WD-40 repeat-containing	0.913	0.614	0.609	5e-91
297816474	447	F-box family protein [Arabidopsis lyrata	0.933	0.624	0.572	5e-91
357458443	438	F-box/WD-40 repeat-containing protein [M	0.943	0.643	0.591	8e-90
22331742	454	F-box/WD-40 repeat-containing protein [A	0.976	0.643	0.551	2e-89
449436339	433	PREDICTED: F-box/WD-40 repeat-containing	0.896	0.618	0.561	8e-84

>gi|297736340|emb|CBI24978.3| unnamed protein product [Vitis vinifera]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/299 (66%), Positives = 231/299 (77%), Gaps = 11/299 (3%)

Query: 1   MERTRSSRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINR 60
           M+ T +  +S   K+ SS+  AT  SL  DI+CMIF  L  FDLVRCSAVCKSWN +IN+
Sbjct: 1   MDGTTADGQSQAQKRMSSRVPAT--SLAHDILCMIFVLLDLFDLVRCSAVCKSWNKVINK 58

Query: 61  CKLLQLLYCKLHG-------FSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSV 113
            KLLQ+LY K  G        S+ S   +++ +E+LAM+HHR +L+ G IDI+QWK HSV
Sbjct: 59  SKLLQILYHKQQGGSIGPSSTSHCSEKPLKVCIEQLAMEHHRLSLQ-GLIDIEQWKGHSV 117

Query: 114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTR 173
              QCRMK GLILTGVGDK +RLWSLE YKC+EE+ LPN A LVDFDFDE+KIVGLIGTR
Sbjct: 118 RAGQCRMKMGLILTGVGDKAVRLWSLESYKCLEEHFLPNLAPLVDFDFDENKIVGLIGTR 177

Query: 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC 233
           IC WRRNG RS+FPSREGTFMKGLCMRY DPEAVVGCEDGTARVFDMYSRKCS+IIRMH 
Sbjct: 178 ICTWRRNGKRSIFPSREGTFMKGLCMRYIDPEAVVGCEDGTARVFDMYSRKCSRIIRMHS 237

Query: 234 APVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLF 292
            PV  L+LS+DQ IISGSSLGSI ISGLSSDQR+A LRSTD TG I  L +    H++F
Sbjct: 238 GPVRCLALSDDQCIISGSSLGSITISGLSSDQRIAKLRSTDSTG-IRTLCFNPRSHLVF 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106143|ref|XP_002314059.1| predicted protein [Populus trichocarpa] gi|222850467|gb|EEE88014.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/302 (67%), Positives = 232/302 (76%), Gaps = 18/302 (5%)

Query: 7   SRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQL 66
           S+RSPP KKRSS    +I SL  D +C+IFS LG FD+VR SAVCK WN II R KLLQL
Sbjct: 7   SKRSPP-KKRSSTTPTSIRSLEHDALCIIFSYLGLFDVVRSSAVCKFWNEIIKRSKLLQL 65

Query: 67  LYC---KLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRG 123
           LY    +    S+ S  S+ ++LEELA++H R +L +G + IDQWK HS+GVDQCRMKRG
Sbjct: 66  LYLKQQRRSSRSDFSEESLNVYLEELAIEHQRQSLVQGSLHIDQWKGHSLGVDQCRMKRG 125

Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK-------------IVGLI 170
           L+LTGVGDKVMRLWSLE YKC+EEYS+P+   LVDFDFDESK             IVGL+
Sbjct: 126 LVLTGVGDKVMRLWSLESYKCIEEYSIPDGVPLVDFDFDESKAVVPYIDIVHRIVIVGLV 185

Query: 171 GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR 230
           GTRICIWRRNG RS+FPSREG FMKG CMRYFDPEAVVGCEDGTARVFDMYS+KCS+I+R
Sbjct: 186 GTRICIWRRNGQRSIFPSREGQFMKGSCMRYFDPEAVVGCEDGTARVFDMYSKKCSRIVR 245

Query: 231 MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHM 290
           MH  PVT LSLSEDQLIISGSSLG I ISGLSSDQRVATLR TD TG I  L +    H 
Sbjct: 246 MHTEPVTCLSLSEDQLIISGSSLGRITISGLSSDQRVATLRPTDSTG-IKSLCFNPVSHQ 304

Query: 291 LF 292
           +F
Sbjct: 305 VF 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487426|ref|XP_002271688.2| PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Vitis vinifera]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/279 (69%), Positives = 219/279 (78%), Gaps = 8/279 (2%)

Query: 21  RATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHG------- 73
           R    SL  DI+CMIF  L  FDLVRCSAVCKSWN +IN+ KLLQ+LY K  G       
Sbjct: 4   RVPATSLAHDILCMIFVLLDLFDLVRCSAVCKSWNKVINKSKLLQILYHKQQGGSIGPSS 63

Query: 74  FSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKV 133
            S+ S   +++ +E+LAM+HHR +L+ G IDI+QWK HSV   QCRMK GLILTGVGDK 
Sbjct: 64  TSHCSEKPLKVCIEQLAMEHHRLSLQ-GLIDIEQWKGHSVRAGQCRMKMGLILTGVGDKA 122

Query: 134 MRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTF 193
           +RLWSLE YKC+EE+ LPN A LVDFDFDE+KIVGLIGTRIC WRRNG RS+FPSREGTF
Sbjct: 123 VRLWSLESYKCLEEHFLPNLAPLVDFDFDENKIVGLIGTRICTWRRNGKRSIFPSREGTF 182

Query: 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSL 253
           MKGLCMRY DPEAVVGCEDGTARVFDMYSRKCS+IIRMH  PV  L+LS+DQ IISGSSL
Sbjct: 183 MKGLCMRYIDPEAVVGCEDGTARVFDMYSRKCSRIIRMHSGPVRCLALSDDQCIISGSSL 242

Query: 254 GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLF 292
           GSI ISGLSSDQR+A LRSTD TG I  L +    H++F
Sbjct: 243 GSITISGLSSDQRIAKLRSTDSTGGIRTLCFNPRSHLVF 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777206|emb|CAN61154.1| hypothetical protein VITISV_013775 [Vitis vinifera]

 Score =  367 bits (942), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 199/334 (59%), Positives = 230/334 (68%), Gaps = 45/334 (13%)

Query: 1   MERTRSSRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINR 60
           M+ T +  +S   K+ SS+  AT  SL  DI+CMIF  L  FDLVRCSAVCKSWN +IN+
Sbjct: 1   MDGTTADGQSQAQKRMSSRVPAT--SLAHDILCMIFVLLDLFDLVRCSAVCKSWNKVINK 58

Query: 61  CKLLQLLYCKLHG-------FSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSV 113
            KLLQ+LY K  G        S+ S   +++ +E+LAM+HHR +L+ G IDI+QWK HSV
Sbjct: 59  SKLLQILYHKQQGGSIGPSSTSHCSEKPLKVCIEQLAMEHHRLSLQ-GLIDIEQWKGHSV 117

Query: 114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTR 173
              QCRMK GLILTGVGDK +RLWSLE YKC+EE+ LPN A LVDFDFDE+KIVGLIGTR
Sbjct: 118 RAGQCRMKMGLILTGVGDKAVRLWSLESYKCLEEHFLPNLAPLVDFDFDENKIVGLIGTR 177

Query: 174 ICIWRRNGLRSVFPSREGTFMKGLCMR--------------------------------- 200
           IC WRRNG RS+FPS EGTFMKGLCMR                                 
Sbjct: 178 ICXWRRNGKRSIFPSXEGTFMKGLCMRNAVVXSVSENGVWSLGEWEGHTVLGSCIEMVVV 237

Query: 201 --YFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAI 258
             Y DPEAVVGCEDGTARVFDMYSRKCS+IIRMH  PV  L+LS+DQ IISGSSLGSI I
Sbjct: 238 RCYIDPEAVVGCEDGTARVFDMYSRKCSRIIRMHSGPVRCLALSDDQCIISGSSLGSITI 297

Query: 259 SGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLF 292
           SGLSSDQR+A LRSTD TG I  L +    H++F
Sbjct: 298 SGLSSDQRIAKLRSTDSTGGIRTLCFNPRSHLVF 331

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185911|ref|NP_001190063.1| F-box/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|332645356|gb|AEE78877.1| F-box/WD-40 repeat-containing protein [Arabidopsis thaliana]

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 181/300 (60%), Positives = 219/300 (73%), Gaps = 8/300 (2%)

Query: 1   MERTRSSRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINR 60
           M RT +   S   K R   P  +IESL+ DI+C+IFS L  FDLV C+ VC SWNA+I R
Sbjct: 1   MGRTETGDESSARKMRRKVP-TSIESLDADILCIIFSFLDLFDLVHCTVVCNSWNAVIKR 59

Query: 61  CKLLQLLYCKLHGFSNTSGSSM-------RLHLEELAMKHHRFALEEGRIDIDQWKAHSV 113
            KLLQ    K+H   + S SS         + +E+ AMKHH+ AL  GRI+I++W+AHS 
Sbjct: 60  LKLLQASCRKMHHLGSDSPSSSTSLDRPAEIDVEDFAMKHHKMALLRGRIEIERWEAHSH 119

Query: 114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTR 173
            V QCRMK+GL+LTGVGDKVMRLWSL+ YKC+EEYSLP+A+SL+DFDFDESKIVGL+GTR
Sbjct: 120 RVSQCRMKKGLLLTGVGDKVMRLWSLKSYKCMEEYSLPDASSLIDFDFDESKIVGLVGTR 179

Query: 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC 233
           I IWRRNG RS+FPSR GTF KGLCMRY DPEAVVGCEDGTARVFDMYS+ CSQIIR   
Sbjct: 180 ISIWRRNGQRSIFPSRAGTFPKGLCMRYIDPEAVVGCEDGTARVFDMYSKTCSQIIRTQG 239

Query: 234 APVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFF 293
            P+T LSLS++QL +SGSSLG + +S    DQ VATL+ST   G I  + + Q  ++ F 
Sbjct: 240 GPITCLSLSDNQLFLSGSSLGRVTVSDPLMDQPVATLKSTITAGGIQTICFNQGTNLAFI 299

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539142|ref|XP_003538059.1| PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Glycine max]

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 172/282 (60%), Positives = 208/282 (73%), Gaps = 9/282 (3%)

Query: 4   TRSSRRSPPP-------KKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNA 56
           T +++R P P       KKR   P  TI SL+ DI+  IF+ L  FDLVRCS VCK WNA
Sbjct: 11  TAAAKRGPSPPSSDQIKKKRRETP-TTILSLDPDIVTTIFAFLDMFDLVRCSLVCKLWNA 69

Query: 57  IINRCKLLQLLYCKLH-GFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGV 115
           I+    L +    K+H  F+  +   +R+ L E+AM+ H  AL+ G   +DQWKAHS  V
Sbjct: 70  IVESRSLREFCERKMHKSFAEFTKKPLRVILGEVAMEQHSLALQCGGFYVDQWKAHSTTV 129

Query: 116 DQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRIC 175
            QCRMK G+++TGVG KV+RLWSL+ YKC+EEYS+P+  SLVDFDFDESKIVGLIG+ +C
Sbjct: 130 AQCRMKMGMLVTGVGHKVIRLWSLDSYKCIEEYSMPDMFSLVDFDFDESKIVGLIGSHLC 189

Query: 176 IWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP 235
           IWRRNG RS+FPS EG F+KG CMRYFDPEAVVGC+DG  RVFDMYSRKCSQIIRMH AP
Sbjct: 190 IWRRNGKRSIFPSLEGKFVKGSCMRYFDPEAVVGCDDGAVRVFDMYSRKCSQIIRMHYAP 249

Query: 236 VTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTG 277
           +T L LSEDQLI+SGS+ GSI +S  SS Q+VATLRS+D  G
Sbjct: 250 ITCLCLSEDQLIMSGSTSGSITMSDPSSVQQVATLRSSDARG 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816474|ref|XP_002876120.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297321958|gb|EFH52379.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 177/309 (57%), Positives = 217/309 (70%), Gaps = 30/309 (9%)

Query: 5   RSSRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLL 64
           R +RR   P         +IESL+ DI+C+IFS L  FDLV C+ VC SW+A+I + KLL
Sbjct: 13  RKTRRRISP---------SIESLDADILCIIFSFLDLFDLVHCTVVCNSWHAVIKKLKLL 63

Query: 65  QLLYCKLH----GFSNTSGS---SMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQ 117
           Q    K+H     F ++S S      + +E+ AMKHH+ AL  GRI+I++W+AHS  V Q
Sbjct: 64  QASCRKMHHLGSDFPSSSTSLDGPAEIDVEDFAMKHHKMALLRGRIEIERWEAHSNRVSQ 123

Query: 118 CRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE-------------- 163
           CRMK+GL+LTGVGDKVMRLWSL+ YKC+EEYSLP+AASL+DFDFDE              
Sbjct: 124 CRMKKGLLLTGVGDKVMRLWSLKSYKCMEEYSLPDAASLIDFDFDEKTSVESLIWISETT 183

Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR 223
           S IVGL+GTRI IWRRNG RS+FPSREGTF KGLCMRY DPEAVVGCEDGTARVFDMYS+
Sbjct: 184 SIIVGLVGTRISIWRRNGQRSIFPSREGTFPKGLCMRYIDPEAVVGCEDGTARVFDMYSK 243

Query: 224 KCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLM 283
            CSQIIR    P+T LSLSE+Q+ +SGSSLG + +S    DQ VATL+ST   G I  + 
Sbjct: 244 TCSQIIRTQGGPITCLSLSENQVFLSGSSLGRVTVSDPLLDQPVATLKSTITAGGIQTIC 303

Query: 284 YPQFLHMLF 292
           + Q  ++ F
Sbjct: 304 FNQGTNLAF 312

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458443|ref|XP_003599502.1| F-box/WD-40 repeat-containing protein [Medicago truncatula] gi|355488550|gb|AES69753.1| F-box/WD-40 repeat-containing protein [Medicago truncatula]

 Score =  336 bits (861), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 171/289 (59%), Positives = 211/289 (73%), Gaps = 7/289 (2%)

Query: 1   MERTRSSRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINR 60
           M  T ++  +    KR     +TI SL+GDI+ +IF+ L  FDLVRCS VCK WN I+  
Sbjct: 1   MHPTSATASTDHKNKRLCNTPSTILSLDGDILSIIFAFLNMFDLVRCSLVCKFWNEILES 60

Query: 61  CKLLQLLYCKLHGFSNTSGS------SMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVG 114
             L      KL   +++S S      S+R+ L ++AM+ HR AL+ GR  +DQWK HS  
Sbjct: 61  RSLRVFYERKLRNDASSSRSFEHTKKSLRMILRDVAMEQHRLALQCGRFHVDQWKGHSTT 120

Query: 115 VDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRI 174
           + QCRMK G ++TGVGDKV+RLWSL+ YKCVEEYS+P+  SLVDFDFDESKIVGLIG+  
Sbjct: 121 ISQCRMKMGTLVTGVGDKVIRLWSLDRYKCVEEYSIPDTLSLVDFDFDESKIVGLIGSHF 180

Query: 175 CIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA 234
           CIWRRNG RSVFPS EG F+KG CMRYFDPEA+VGC+DG+ RVFDMYSR+CSQIIRMH A
Sbjct: 181 CIWRRNGKRSVFPSLEGKFIKGSCMRYFDPEAMVGCDDGSVRVFDMYSRRCSQIIRMHSA 240

Query: 235 PVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTG-HIICL 282
           P+T L LSEDQLI+SGS+ G+I I+  SS Q+VATLRS+D  G   +CL
Sbjct: 241 PITCLCLSEDQLILSGSTSGNITIADPSSVQKVATLRSSDFRGIKTLCL 289

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331742|ref|NP_190771.2| F-box/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|160332332|sp|Q9SV01.2|FBW4_ARATH RecName: Full=F-box/WD-40 repeat-containing protein At3g52030 gi|332645355|gb|AEE78876.1| F-box/WD-40 repeat-containing protein [Arabidopsis thaliana]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 177/321 (55%), Positives = 217/321 (67%), Gaps = 29/321 (9%)

Query: 1   MERTRSSRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINR 60
           M RT +   S   K R   P  +IESL+ DI+C+IFS L  FDLV C+ VC SWNA+I R
Sbjct: 1   MGRTETGDESSARKMRRKVP-TSIESLDADILCIIFSFLDLFDLVHCTVVCNSWNAVIKR 59

Query: 61  CKLLQLLYCKLHGFSNTSGSSM-------RLHLEELAMKHHRFALEEGRIDIDQWKAHSV 113
            KLLQ    K+H   + S SS         + +E+ AMKHH+ AL  GRI+I++W+AHS 
Sbjct: 60  LKLLQASCRKMHHLGSDSPSSSTSLDRPAEIDVEDFAMKHHKMALLRGRIEIERWEAHSH 119

Query: 114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLI--- 170
            V QCRMK+GL+LTGVGDKVMRLWSL+ YKC+EEYSLP+A+SL+DFDFDESK + ++   
Sbjct: 120 RVSQCRMKKGLLLTGVGDKVMRLWSLKSYKCMEEYSLPDASSLIDFDFDESKKLEVVSLA 179

Query: 171 ------------------GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
                             GTRI IWRRNG RS+FPSR GTF KGLCMRY DPEAVVGCED
Sbjct: 180 WEYFDSVVVVVVEIVGLVGTRISIWRRNGQRSIFPSRAGTFPKGLCMRYIDPEAVVGCED 239

Query: 213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRS 272
           GTARVFDMYS+ CSQIIR    P+T LSLS++QL +SGSSLG + +S    DQ VATL+S
Sbjct: 240 GTARVFDMYSKTCSQIIRTQGGPITCLSLSDNQLFLSGSSLGRVTVSDPLMDQPVATLKS 299

Query: 273 TDCTGHIICLMYPQFLHMLFF 293
           T   G I  + + Q  ++ F 
Sbjct: 300 TITAGGIQTICFNQGTNLAFI 320

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436339|ref|XP_004135950.1| PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Cucumis sativus] gi|449488809|ref|XP_004158178.1| PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Cucumis sativus]

 Score =  316 bits (810), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 160/285 (56%), Positives = 198/285 (69%), Gaps = 17/285 (5%)

Query: 10  SPPP-------KKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCK 62
           +PPP       ++RS      + SL+ DI+C+IFS L  FDLVRC  VCKSWN  I + +
Sbjct: 2   TPPPTADRSSARRRSDVDAKPVHSLSHDILCIIFSFLDLFDLVRCLGVCKSWNYAIYKSE 61

Query: 63  LLQLLYCKLHGFSNTSGSSMRLH----------LEELAMKHHRFALEEGRIDIDQWKAHS 112
           +L+    +       S S+  +           LEE+AM+ H+ ALE+GRI + QW  HS
Sbjct: 62  ILRTFCLRYQKQEMNSASTSEVSFSLEKPLLECLEEIAMERHKLALEKGRIRVSQWIGHS 121

Query: 113 VGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGT 172
           V V+QCRMK GLILTGVGDKVMRLWS E ++C+EEYS+P    LVDFDFD  KIVGLIG 
Sbjct: 122 VRVEQCRMKMGLILTGVGDKVMRLWSPENFRCLEEYSVPEKMPLVDFDFDVGKIVGLIGR 181

Query: 173 RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH 232
           ++CIW R+G RS+FPSRE TF KGLCMRYFD EAVVGCEDGTA VFDMYSR+CS+IIRM 
Sbjct: 182 QLCIWSRSGKRSIFPSRECTFEKGLCMRYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRML 241

Query: 233 CAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTG 277
             PVT L +++DQL+  GS LG+I +SG+ SDQRV  LRS +  G
Sbjct: 242 PGPVTCLCVNDDQLMFGGSLLGNIGVSGVRSDQRVVMLRSRNTVG 286

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
TAIR|locus:2083735	454	AT3G52030 "AT3G52030" [Arabido	0.478	0.314	0.606	1.1e-82
ZFIN|ZDB-GENE-050522-303	455	fbxw2 "F-box and WD repeat dom	0.645	0.424	0.272	2.1e-07
UNIPROTKB|Q58D00	454	FBXW2 "F-box/WD repeat-contain	0.648	0.427	0.25	4e-06
UNIPROTKB|E2R6D8	454	FBXW2 "Uncharacterized protein	0.648	0.427	0.25	5.3e-06
UNIPROTKB|Q9UKT8	454	FBXW2 "F-box/WD repeat-contain	0.648	0.427	0.25	5.3e-06
RGD|1310460	454	Fbxw2 "F-box and WD repeat dom	0.648	0.427	0.245	1.2e-05
MGI|MGI:1353435	422	Fbxw2 "F-box and WD-40 domain	0.648	0.459	0.245	1.3e-05
UNIPROTKB|Q5ZK75	454	FBXW2 "Uncharacterized protein	0.648	0.427	0.230	5.7e-05

TAIR|locus:2083735 AT3G52030 "AT3G52030" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
 Identities = 91/150 (60%), Positives = 114/150 (76%)

Query:    23 TIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSM 82
             +IESL+ DI+C+IFS L  FDLV C+ VC SWNA+I R KLLQ    K+H   + S SS 
Sbjct:    22 SIESLDADILCIIFSFLDLFDLVHCTVVCNSWNAVIKRLKLLQASCRKMHHLGSDSPSSS 81

Query:    83 -------RLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMR 135
                     + +E+ AMKHH+ AL  GRI+I++W+AHS  V QCRMK+GL+LTGVGDKVMR
Sbjct:    82 TSLDRPAEIDVEDFAMKHHKMALLRGRIEIERWEAHSHRVSQCRMKKGLLLTGVGDKVMR 141

Query:   136 LWSLEGYKCVEEYSLPNAASLVDFDFDESK 165
             LWSL+ YKC+EEYSLP+A+SL+DFDFDESK
Sbjct:   142 LWSLKSYKCMEEYSLPDASSLIDFDFDESK 171

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

ZFIN|ZDB-GENE-050522-303 fbxw2 "F-box and WD repeat domain containing 2" [Danio rerio (taxid:7955)]

 Score = 144 (55.7 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 58/213 (27%), Positives = 88/213 (41%)

Query:    44 LVRCSAVCKSWNAIINRCKLLQLLYCKLHGFS-NTSGSSMR----LHLE-ELAMKHHRFA 97
             L+ C  VCK WN +IN C  +    C+  G+  + S    R    ++L+ +L MK  R  
Sbjct:    77 LLTCCLVCKQWNKVINGCTEVWQSVCRDLGWRIDESIQDARHWKVIYLKAKLRMKQLR-- 134

Query:    98 LEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLV 157
              EE   +      HS  V     + GL+ TG  D   +LW +   +CV        A++ 
Sbjct:   135 -EEDAFETSSLIGHSARVYALYYRDGLLCTGSDDLSAKLWDVRTGQCVYGIQTHTCATV- 192

Query:   158 DFDFDESKIV-GLIGTRICIWR-RNGLR-SVFPSREGTFMKGLCMRYFDP-EAVV-GCED 212
                FDE K+V G     I  W    G +   F    G       + Y D  + +V G  D
Sbjct:   193 --KFDEQKLVTGSFDNTIACWEWSTGAKIQQFRGHTGAVFS---IDYNDELDTLVSGSAD 247

Query:   213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQ 245
              T +V+ + +  C   +  H   VT + L + Q
Sbjct:   248 FTVKVWSLSAGTCVNTLTGHTEWVTKVHLQKSQ 280

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q58D00 FBXW2 "F-box/WD repeat-containing protein 2" [Bos taurus (taxid:9913)]

 Score = 133 (51.9 bits), Expect = 4.0e-06, P = 4.0e-06
 Identities = 52/208 (25%), Positives = 83/208 (39%)

Query:    44 LVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKH--HRFALEEG 101
             L+ C  V K WN +I+ C  +    CK  G+         LH +++ +K       LE+ 
Sbjct:    77 LLTCCLVSKQWNKVISACTEVWQTACKSLGWQIDDSVQDALHWKKVYLKAILRMKQLEDH 136

Query:   102 R-IDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD 160
                +      HS  V     K GL+ TG  D   +LW +   +CV        A++    
Sbjct:   137 EAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAV---K 193

Query:   161 FDESKIV-GLIGTRICIWR-RNGLRSV-FPSREGTFMKGLCMRYFDPEAVV--GCEDGTA 215
             FDE K+V G     +  W   +G R+  F    G       + Y D   ++  G  D T 
Sbjct:   194 FDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFS---VDYNDELDILVSGSADFTV 250

Query:   216 RVFDMYSRKCSQIIRMHCAPVTSLSLSE 243
             +V+ + +  C   +  H   VT + L +
Sbjct:   251 KVWALSAGTCLNTLTGHTEWVTKVVLQK 278

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E2R6D8 FBXW2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 132 (51.5 bits), Expect = 5.3e-06, P = 5.3e-06
 Identities = 52/208 (25%), Positives = 83/208 (39%)

Query:    44 LVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKH--HRFALEEG 101
             L+ C  V K WN +I+ C  +    CK  G+         LH +++ +K       LE+ 
Sbjct:    77 LLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDALHWKKVYLKAILRMKQLEDH 136

Query:   102 R-IDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD 160
                +      HS  V     K GL+ TG  D   +LW +   +CV        A++    
Sbjct:   137 EAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAV---K 193

Query:   161 FDESKIV-GLIGTRICIWR-RNGLRSV-FPSREGTFMKGLCMRYFDPEAVV--GCEDGTA 215
             FDE K+V G     +  W   +G R+  F    G       + Y D   ++  G  D T 
Sbjct:   194 FDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFS---VDYNDELDILVSGSADFTV 250

Query:   216 RVFDMYSRKCSQIIRMHCAPVTSLSLSE 243
             +V+ + +  C   +  H   VT + L +
Sbjct:   251 KVWALSAGTCLNTLTGHTEWVTKVVLQK 278

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q9UKT8 FBXW2 "F-box/WD repeat-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 5.3e-06, P = 5.3e-06
 Identities = 52/208 (25%), Positives = 83/208 (39%)

Query:    44 LVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKH--HRFALEEG 101
             L+ C  V K WN +I+ C  +    CK  G+         LH +++ +K       LE+ 
Sbjct:    77 LLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDALHWKKVYLKAILRMKQLEDH 136

Query:   102 R-IDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD 160
                +      HS  V     K GL+ TG  D   +LW +   +CV        A++    
Sbjct:   137 EAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAV---K 193

Query:   161 FDESKIV-GLIGTRICIWR-RNGLRSV-FPSREGTFMKGLCMRYFDPEAVV--GCEDGTA 215
             FDE K+V G     +  W   +G R+  F    G       + Y D   ++  G  D T 
Sbjct:   194 FDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFS---VDYNDELDILVSGSADFTV 250

Query:   216 RVFDMYSRKCSQIIRMHCAPVTSLSLSE 243
             +V+ + +  C   +  H   VT + L +
Sbjct:   251 KVWALSAGTCLNTLTGHTEWVTKVVLQK 278

GO:0005737 "cytoplasm" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0006508 "proteolysis" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0016567 "protein ubiquitination" evidence=TAS

RGD|1310460 Fbxw2 "F-box and WD repeat domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 129 (50.5 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 51/208 (24%), Positives = 82/208 (39%)

Query:    44 LVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKH--HRFALEEG 101
             L+ C  V K WN +I+ C  +    CK  G+         LH +++ +K       LE+ 
Sbjct:    77 LLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDALHWKKVYLKAILRMKQLEDH 136

Query:   102 R-IDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD 160
                +      HS  V     K GL+ TG  D   +LW +   +CV        A++    
Sbjct:   137 EAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAV---K 193

Query:   161 FDESKIV-GLIGTRICIWR-RNGLRSV-FPSREGTFMKGLCMRYFDPEAVV--GCEDGTA 215
             FDE K+V G     +  W   +G R+  F    G       + Y D   ++  G  D   
Sbjct:   194 FDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFS---VDYSDELDILVSGSADFAV 250

Query:   216 RVFDMYSRKCSQIIRMHCAPVTSLSLSE 243
             +V+ + +  C   +  H   VT + L +
Sbjct:   251 KVWALSAGTCLNTLTGHTEWVTKVVLQQ 278

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

MGI|MGI:1353435 Fbxw2 "F-box and WD-40 domain protein 2" [Mus musculus (taxid:10090)]

 Score = 128 (50.1 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 51/208 (24%), Positives = 82/208 (39%)

Query:    44 LVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKH--HRFALEEG 101
             L+ C  V K WN +I+ C  +    CK  G+         LH +++ +K       LE+ 
Sbjct:    77 LLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDSLHWKKVYLKAILRMKQLEDH 136

Query:   102 R-IDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD 160
                +      HS  V     K GL+ TG  D   +LW +   +CV        A++    
Sbjct:   137 EAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAV---K 193

Query:   161 FDESKIV-GLIGTRICIWR-RNGLRSV-FPSREGTFMKGLCMRYFDPEAVV--GCEDGTA 215
             FDE K+V G     +  W   +G R+  F    G       + Y D   ++  G  D   
Sbjct:   194 FDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFS---VDYSDELDILVSGSADFAV 250

Query:   216 RVFDMYSRKCSQIIRMHCAPVTSLSLSE 243
             +V+ + +  C   +  H   VT + L +
Sbjct:   251 KVWALSAGTCLNTLTGHTEWVTKVVLQK 278

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q5ZK75 FBXW2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 123 (48.4 bits), Expect = 5.7e-05, P = 5.7e-05
 Identities = 48/208 (23%), Positives = 82/208 (39%)

Query:    44 LVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMK---HHRFALEE 100
             L+ C  V K WN +I+ C  +    CK  G+         LH +++ +K     +   + 
Sbjct:    77 LLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDPLHWKKVYLKAILRMKQLKDH 136

Query:   101 GRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD 160
                +      HS  V     + GL+ TG  D   +LW +   +C+        A++    
Sbjct:   137 EAFETSSLIGHSARVYALYYRDGLLCTGSDDLSAKLWDVSTGQCIYGIQTHTCATV---K 193

Query:   161 FDESKIV-GLIGTRICIWR-RNGLRSV-FPSREGTFMKGLCMRYFDPEAVV--GCEDGTA 215
             FDE K+V G     +  W   +G ++  F    G       + Y D   V+  G  D T 
Sbjct:   194 FDEQKLVTGSFDNTVACWEWSSGAKTQHFRGHTGAVFS---VDYNDELDVLVSGSADFTV 250

Query:   216 RVFDMYSRKCSQIIRMHCAPVTSLSLSE 243
             +V+ + +  C   +  H   VT + L +
Sbjct:   251 KVWALSTGTCLNTLTGHTEWVTKVVLQK 278


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.141   0.452    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      299       264   0.00092  114 3  11 22  0.36    33
                                                     32  0.50    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  225 KB (2122 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.70u 0.30s 19.00t   Elapsed:  00:00:01
  Total cpu time:  18.70u 0.30s 19.00t   Elapsed:  00:00:01
  Start:  Tue May 21 01:55:16 2013   End:  Tue May 21 01:55:17 2013

GO:0005737 "cytoplasm" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SV01	FBW4_ARATH	No assigned EC number	0.5514	0.9765	0.6431	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028698001 SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (435 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	299
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-07
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	1e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-06
pfam12937	47	pfam12937, F-box-like, F-box-like	8e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-06
pfam00646	48	pfam00646, F-box, F-box domain	1e-05

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.0 bits (136), Expect = 3e-09
 Identities = 53/280 (18%), Positives = 97/280 (34%), Gaps = 19/280 (6%)

Query: 23  TIESLNGDIICMIFSSLG-FFDLVRCSAVCKSWNAIINRCKLLQLL-----YCKLHGFSN 76
            +      I  + FS  G            K W+       +  L             S+
Sbjct: 60  LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119

Query: 77  TSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM---KRGLILTGVGDKV 133
             G+S+ L    L      + L      I   + HS  V         + L      D  
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179

Query: 134 MRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIVGLIG--TRICIWRRNGLRSVFPSRE 190
           ++LW L   K +   +      S + F  D   ++        I +W  +  + +  +  
Sbjct: 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS 239

Query: 191 GTFMKGLCMRYFDPE---AVVGCEDGTARVFDM-YSRKCSQIIRMHCAPVTSLSLSED-Q 245
           G       +  F P+      G  DGT R++D+  S    + +  H + V S++ S D +
Sbjct: 240 G--HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297

Query: 246 LIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYP 285
           L+ SGSS G++ +  L + + +++L      G +  L + 
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFS 337

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 16/173 (9%)

Query: 121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLV-DFDFDESKIVGLIGTR---ICI 176
              ++ +   DK +++W +E  KC+   +L      V    F          ++   I +
Sbjct: 104 DGRILSSSSRDKTIKVWDVETGKCL--TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161

Query: 177 WRRNGLRSV--FPSREGTFMKGLCMRYFDPEA--VVGCEDGTARVFDMYSRKCSQIIRMH 232
           W     + V       G       + +       +    DGT +++D+ + KC   +R H
Sbjct: 162 WDLRTGKCVATLTGHTGE---VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH 218

Query: 233 CAPVTSLSLSEDQLIISGSSL-GSIAISGLSSDQRVATLRSTDCTGHIICLMY 284
              V S++ S D  +++  S  G+I +  L + + V TL     T  +  L +
Sbjct: 219 ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAW 269

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 12/160 (7%)

Query: 108 WKAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDES 164
            + H+  V+          + +   D  ++LW L   KCV   +      + V F  D  
Sbjct: 131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE 190

Query: 165 KIV--GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVFD 219
           K++     GT I +W  +  + +      E            D   +    EDGT RV+D
Sbjct: 191 KLLSSSSDGT-IKLWDLSTGKCLGTLRGHENGVNS--VAFSPDGYLLASGSEDGTIRVWD 247

Query: 220 MYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI 258
           + + +C Q +  H   VTSL+ S D + + SGS+ G+I I
Sbjct: 248 LRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 30 DIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQ 65
          +I+  I S L   DL+R   V + W ++I+      
Sbjct: 4  EILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWF 39

Length = 41

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 53/258 (20%), Positives = 90/258 (34%), Gaps = 10/258 (3%)

Query: 16  RSSKPRATIESLNGDIICMIFSSLGFFDLVRCSA--VCKSWNAIINRCKLLQLLYCKLHG 73
           R+ KP +T+      +  + FS  G   +   S+    + W+    +     L       
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245

Query: 74  FSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCR--MKRGLILTGVGD 131
            S+ S     L           + L      +     HS  V          L+ +G  D
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD 305

Query: 132 KVMRLWSLEGYKCVEEYSLPNAASLV---DFDFDESKIVGLIGT--RICIWRRNGLRSVF 186
             +RLW LE  K +   +L      V    F  D S +V        I +W     + + 
Sbjct: 306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK 365

Query: 187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q 245
                + +  +           G  DGT R++D+ +    + +  H + VTSL  S D +
Sbjct: 366 TLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGK 425

Query: 246 LIISGSSLGSIAISGLSS 263
            + SGSS  +I +  L +
Sbjct: 426 SLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 42.1 bits (100), Expect = 8e-06
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 30 DIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKL 63
          +I+  IFS L   DL+R + VC+ W  + +   L
Sbjct: 7  EILLQIFSYLDPRDLLRLALVCRRWRELASDDSL 40

This is an F-box-like family. Length = 47

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 42/170 (24%)

Query: 105 IDQWKAHSVGVDQCR--MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFD 162
               K H+ GV          L+ TG GD  +++W LE  +                   
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL------------------ 43

Query: 163 ESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS 222
              + G  G          +R V  S +GT++              G  D T R++D+ +
Sbjct: 44  LRTLKGHTG---------PVRDVAASADGTYL------------ASGSSDKTIRLWDLET 82

Query: 223 RKCSQIIRMHCAPVTSLSLSEDQLIISGSSL-GSIAISGLSSDQRVATLR 271
            +C + +  H + V+S++ S D  I+S SS   +I +  + + + + TLR
Sbjct: 83  GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR 132

Length = 289

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 23 TIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYC 69
          ++  L  D++  I S L   DL+R S V K W ++++  KL +    
Sbjct: 2  SLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.98
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.98
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.95
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.95
KOG0266	456	consensus WD40 repeat-containing protein [General	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.95
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.94
PLN00181	793	protein SPA1-RELATED; Provisional	99.94
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.94
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
PTZ00421	493	coronin; Provisional	99.94
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.93
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.93
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.93
PLN00181	793	protein SPA1-RELATED; Provisional	99.93
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.93
PTZ00420	568	coronin; Provisional	99.93
PTZ00421	493	coronin; Provisional	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.92
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.92
KOG0645	312	consensus WD40 repeat protein [General function pr	99.92
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.92
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
PTZ00420	568	coronin; Provisional	99.92
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG0289	506	consensus mRNA splicing factor [General function p	99.91
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.91
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.91
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.91
KOG0289	506	consensus mRNA splicing factor [General function p	99.9
KOG0296	399	consensus Angio-associated migratory cell protein	99.9
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.9
KOG0643	327	consensus Translation initiation factor 3, subunit	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.9
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.9
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.9
KOG0641	350	consensus WD40 repeat protein [General function pr	99.9
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.9
KOG2096	420	consensus WD40 repeat protein [General function pr	99.89
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.89
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.89
KOG0641	350	consensus WD40 repeat protein [General function pr	99.89
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.88
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.88
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.88
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.87
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.87
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.87
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.87
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.87
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.87
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.87
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.86
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.86
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.86
KOG0646	476	consensus WD40 repeat protein [General function pr	99.86
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.85
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.85
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.85
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.85
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.85
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.85
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.84
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.84
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.84
KOG2048	691	consensus WD40 repeat protein [General function pr	99.83
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.83
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.83
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
KOG1539	910	consensus WD repeat protein [General function pred	99.83
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.82
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.81
KOG0639	705	consensus Transducin-like enhancer of split protei	99.81
KOG2096	420	consensus WD40 repeat protein [General function pr	99.81
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.81
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.81
KOG0267	825	consensus Microtubule severing protein katanin p80	99.8
KOG0646	476	consensus WD40 repeat protein [General function pr	99.8
KOG1274	933	consensus WD40 repeat protein [General function pr	99.79
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.79
KOG0639	705	consensus Transducin-like enhancer of split protei	99.79
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.78
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.77
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.77
KOG2055	514	consensus WD40 repeat protein [General function pr	99.77
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.77
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.77
KOG1273	405	consensus WD40 repeat protein [General function pr	99.77
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.75
KOG2055	514	consensus WD40 repeat protein [General function pr	99.75
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.75
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.75
KOG4328	498	consensus WD40 protein [Function unknown]	99.74
KOG1274	933	consensus WD40 repeat protein [General function pr	99.74
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.74
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.73
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.73
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.72
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.72
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.72
KOG1539	910	consensus WD repeat protein [General function pred	99.72
KOG4328	498	consensus WD40 protein [Function unknown]	99.71
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.71
KOG0649	325	consensus WD40 repeat protein [General function pr	99.7
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.69
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.69
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.69
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.69
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.68
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.67
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.66
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.66
KOG1188	376	consensus WD40 repeat protein [General function pr	99.65
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.65
KOG0649	325	consensus WD40 repeat protein [General function pr	99.64
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.64
KOG1310	758	consensus WD40 repeat protein [General function pr	99.63
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.63
KOG2048	691	consensus WD40 repeat protein [General function pr	99.62
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.62
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.61
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.6
KOG1273	405	consensus WD40 repeat protein [General function pr	99.6
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.59
KOG4227	609	consensus WD40 repeat protein [General function pr	99.57
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.57
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.56
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.56
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.56
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.56
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.55
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.54
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.53
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.53
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.52
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.52
COG2319	466	FOG: WD40 repeat [General function prediction only	99.52
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.51
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.51
KOG4227	609	consensus WD40 repeat protein [General function pr	99.51
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.51
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.5
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.5
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.49
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.49
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.49
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.49
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.49
KOG1188	376	consensus WD40 repeat protein [General function pr	99.48
PRK01742	429	tolB translocation protein TolB; Provisional	99.47
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.47
KOG4547	541	consensus WD40 repeat-containing protein [General	99.43
PRK01742	429	tolB translocation protein TolB; Provisional	99.41
COG2319	466	FOG: WD40 repeat [General function prediction only	99.41
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.41
PRK11028	330	6-phosphogluconolactonase; Provisional	99.41
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.4
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.4
PRK04922	433	tolB translocation protein TolB; Provisional	99.39
PRK03629	429	tolB translocation protein TolB; Provisional	99.38
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.38
PRK05137	435	tolB translocation protein TolB; Provisional	99.37
KOG2139	445	consensus WD40 repeat protein [General function pr	99.37
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.37
KOG1963	792	consensus WD40 repeat protein [General function pr	99.34
PRK02889	427	tolB translocation protein TolB; Provisional	99.34
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.33
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.33
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.31
PRK11028	330	6-phosphogluconolactonase; Provisional	99.31
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.31
KOG1334	559	consensus WD40 repeat protein [General function pr	99.3
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.3
KOG2321	703	consensus WD40 repeat protein [General function pr	99.29
PRK03629	429	tolB translocation protein TolB; Provisional	99.29
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.27
KOG1310	758	consensus WD40 repeat protein [General function pr	99.24
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.22
KOG2139	445	consensus WD40 repeat protein [General function pr	99.21
PRK00178	430	tolB translocation protein TolB; Provisional	99.19
PRK05137	435	tolB translocation protein TolB; Provisional	99.19
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.18
PRK04922	433	tolB translocation protein TolB; Provisional	99.15
KOG1963	792	consensus WD40 repeat protein [General function pr	99.15
KOG1334	559	consensus WD40 repeat protein [General function pr	99.15
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.14
PRK02889	427	tolB translocation protein TolB; Provisional	99.13
PRK04792	448	tolB translocation protein TolB; Provisional	99.11
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.11
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.1
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.06
KOG2321	703	consensus WD40 repeat protein [General function pr	99.06
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.05
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.04
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.04
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.03
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.03
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.03
KOG2315	566	consensus Predicted translation initiation factor	98.99
KOG2695	425	consensus WD40 repeat protein [General function pr	98.98
PRK01029	428	tolB translocation protein TolB; Provisional	98.97
PRK00178	430	tolB translocation protein TolB; Provisional	98.96
PRK04792	448	tolB translocation protein TolB; Provisional	98.96
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.91
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.91
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.9
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.83
COG4946	668	Uncharacterized protein related to the periplasmic	98.82
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.8
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.79
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.78
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.78
PRK04043	419	tolB translocation protein TolB; Provisional	98.76
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.74
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.71
KOG4547	541	consensus WD40 repeat-containing protein [General	98.67
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.63
PRK01029	428	tolB translocation protein TolB; Provisional	98.63
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.61
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.61
KOG2315	566	consensus Predicted translation initiation factor	98.61
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.6
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.6
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.58
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.58
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.56
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.54
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.5
COG4946	668	Uncharacterized protein related to the periplasmic	98.48
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.47
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.46
KOG2314	698	consensus Translation initiation factor 3, subunit	98.45
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.44
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.43
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.42
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.39
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.38
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.37
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.36
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.35
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.35
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.33
PRK04043	419	tolB translocation protein TolB; Provisional	98.33
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.32
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.32
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.29
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.28
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.28
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.27
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.26
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.23
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.23
KOG2695	425	consensus WD40 repeat protein [General function pr	98.21
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.21
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.15
PRK02888	635	nitrous-oxide reductase; Validated	98.14
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.14
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.13
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.11
KOG2314	698	consensus Translation initiation factor 3, subunit	98.07
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.05
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.04
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.03
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.99
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.99
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.95
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.92
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.91
KOG3621	726	consensus WD40 repeat-containing protein [General	97.9
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.89
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.88
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.86
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.83
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.77
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.77
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.76
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.74
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.74
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.69
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.68
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.67
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.61
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	97.57
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.55
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.54
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.47
COG3391	381	Uncharacterized conserved protein [Function unknow	97.46
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.45
KOG2395	644	consensus Protein involved in vacuole import and d	97.45
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.44
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.41
PRK02888	635	nitrous-oxide reductase; Validated	97.41
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.38
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.38
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.37
KOG3621	726	consensus WD40 repeat-containing protein [General	97.36
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.36
KOG2444	238	consensus WD40 repeat protein [General function pr	97.34
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.32
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.27
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.27
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.26
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.25
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.25
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.25
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.19
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.11
COG3391	381	Uncharacterized conserved protein [Function unknow	97.1
KOG2395	644	consensus Protein involved in vacuole import and d	97.07
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.02
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.01
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.87
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.84
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.66
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.57
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.54
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.53
KOG2247	615	consensus WD40 repeat-containing protein [General	96.3
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.24
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.21
PHA02713	557	hypothetical protein; Provisional	96.06
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.0
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.97
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.96
COG5167	776	VID27 Protein involved in vacuole import and degra	95.94
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.93
PHA02713	557	hypothetical protein; Provisional	95.89
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	95.89
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.88
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.87
KOG2444	238	consensus WD40 repeat protein [General function pr	95.81
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.7
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.69
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.65
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	95.58
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.45
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.33
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.32
PHA03098	534	kelch-like protein; Provisional	95.32
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.2
PRK13616	591	lipoprotein LpqB; Provisional	95.01
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.63
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.54
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.51
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.46
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.33
COG5167	776	VID27 Protein involved in vacuole import and degra	94.22
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.74
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.65
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.44
PHA03098	534	kelch-like protein; Provisional	93.28
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.21
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	93.2
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.16
KOG2247	615	consensus WD40 repeat-containing protein [General	92.9
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.69
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	92.21
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	92.19
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.8
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	91.42
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	91.41
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	91.11
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	90.79
PHA02790	480	Kelch-like protein; Provisional	90.48
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	90.41
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.36
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	89.81
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	89.75
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	89.67
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	89.11
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.76
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.68
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.6
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.53
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	88.49
PHA02790	480	Kelch-like protein; Provisional	88.17
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	87.9
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	87.85
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	87.72
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	87.53
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	87.38
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.24
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	86.47
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	86.46
PRK13616	591	lipoprotein LpqB; Provisional	86.12
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	85.86
COG1520	370	FOG: WD40-like repeat [Function unknown]	85.2
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	85.16
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	85.04
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	83.78
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	83.75
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	83.55
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	83.4
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	82.49
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	82.41
COG4590	733	ABC-type uncharacterized transport system, permeas	82.34
PRK10115	686	protease 2; Provisional	81.48
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	81.27
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	81.05
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	80.57
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	80.49
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	80.32
COG5276	370	Uncharacterized conserved protein [Function unknow	80.1

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-40  Score=259.89  Aligned_cols=282  Identities=14%  Similarity=0.132  Sum_probs=224.6

Q ss_pred             CCCCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhcCCCCCCCchhhh
Q 022303           10 SPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLHGFSNTSGSSMRL   84 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~~~~~~~d~~~~~   84 (299)
                      +++++..++.-+.+.++|++++-..++...+|...|.|++++|++..||+     ++.+|+....+..   ...-...+-
T Consensus       125 p~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~---g~~l~gH~K  201 (480)
T KOG0271|consen  125 PTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI---GRALRGHKK  201 (480)
T ss_pred             CCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc---cccccCccc
Confidence            46788889999999999999999999999999999999999999999999     5778874221111   000000122


Q ss_pred             hhhhhhhcccc-----ceee-------------cCceeeEEeeccccCeeEEEec-CCEEEEEeCCCcEEEEecCCceeE
Q 022303           85 HLEELAMKHHR-----FALE-------------EGRIDIDQWKAHSVGVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCV  145 (299)
Q Consensus        85 ~~~~~~~~~~~-----~~l~-------------~g~~~~~~~~~h~~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~  145 (299)
                      |+..|.+.|..     +.++             .++..+..+.||+.+|+|+.|- ++++++|+.|++|++|+...|++.
T Consensus       202 ~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~  281 (480)
T KOG0271|consen  202 WITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLC  281 (480)
T ss_pred             ceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHH
Confidence            22233322211     1222             2223356678999999999995 669999999999999999999999


Q ss_pred             EEecCCCceeE-EEEe-----------cCCC-------------------------EEE-EEcCCeEEEEecCCcee---
Q 022303          146 EEYSLPNAASL-VDFD-----------FDES-------------------------KIV-GLIGTRICIWRRNGLRS---  184 (299)
Q Consensus       146 ~~~~~~~~~~~-~~~~-----------~~~~-------------------------~l~-~~~d~~i~v~d~~~~~~---  184 (299)
                      ..+++|..-+. ++.+           |.++                         .++ ++.|.++.+|+......   
T Consensus       282 r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~  361 (480)
T KOG0271|consen  282 RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT  361 (480)
T ss_pred             HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchh
Confidence            99998754333 5544           3333                         377 99999999999876543   


Q ss_pred             eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 022303          185 VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS  263 (299)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~  263 (299)
                      ....|...++ -+.++|++.++++++.|+.|++||.++|+.+..|++|-.+|..++|+.| ++|++|+.|.++++||+++
T Consensus       362 rmtgHq~lVn-~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t  440 (480)
T KOG0271|consen  362 RMTGHQALVN-HVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT  440 (480)
T ss_pred             hhhchhhhee-eEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence            3344444444 3589999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             CceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          264 DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       264 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      .++..-+.+|.+  .|.++.|+|||+.+++|+-.
T Consensus       441 kKl~~DLpGh~D--EVf~vDwspDG~rV~sggkd  472 (480)
T KOG0271|consen  441 KKLKQDLPGHAD--EVFAVDWSPDGQRVASGGKD  472 (480)
T ss_pred             eeecccCCCCCc--eEEEEEecCCCceeecCCCc
Confidence            999999999999  99999999999999998753

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.3e-38  Score=247.64  Aligned_cols=257  Identities=14%  Similarity=0.151  Sum_probs=227.2

Q ss_pred             CCCCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhh--HHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhh
Q 022303           10 SPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKS--WNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLE   87 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~--~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~   87 (299)
                      .+++....+..+-..+.|+.+.+..++.+.+|.+.|.++.|+|.  ...+|+                ...|+++|+|  
T Consensus       185 ~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat----------------~s~Dgtvklw--  246 (459)
T KOG0272|consen  185 RDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLAT----------------ASADGTVKLW--  246 (459)
T ss_pred             cCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceee----------------eccCCceeee--
Confidence            45667777778888999999999889999999999999999998  557776                4578999999  


Q ss_pred             hhhhccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCC
Q 022303           88 ELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDES  164 (299)
Q Consensus        88 ~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~  164 (299)
                      .+..+          .++..+.+|...|..++| |+| +|+|++.|.+-++||+.+++.+...++|+..+. ++|.+||.
T Consensus       247 ~~~~e----------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS  316 (459)
T KOG0272|consen  247 KLSQE----------TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS  316 (459)
T ss_pred             ccCCC----------cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc
Confidence            32332          334455899999999999 777 999999999999999999999988899976665 99999999


Q ss_pred             EEE-EEcCCeEEEEecCCcee--eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEe
Q 022303          165 KIV-GLIGTRICIWRRNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSL  241 (299)
Q Consensus       165 ~l~-~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~  241 (299)
                      +++ |+.|..-+|||++++..  .+..|...+. .++|+|+|..+++|+.|++++|||++..+.+..+.+|..-|+.+.|
T Consensus       317 L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~-~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~  395 (459)
T KOG0272|consen  317 LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEIL-SVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKY  395 (459)
T ss_pred             eeeccCccchhheeecccCcEEEEeccccccee-eEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEe
Confidence            999 99999999999999874  4566666655 4589999999999999999999999999999999999999999999


Q ss_pred             CCC--CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          242 SED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       242 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +|+  .+|+|++.|++++||..++..+++++.+|.+  .|.++..+||+++++++|+-
T Consensus       396 ~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~D  451 (459)
T KOG0272|consen  396 SPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFD  451 (459)
T ss_pred             cccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccC
Confidence            995  8999999999999999999999999999999  99999999999999999874

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=8.4e-35  Score=220.77  Aligned_cols=254  Identities=15%  Similarity=0.170  Sum_probs=218.5

Q ss_pred             hccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCcee-------
Q 022303           37 SSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRID-------  104 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~-------  104 (299)
                      .+.+|..-|.++.|+++.+.+++     ...+|+.+.-+....+. -   --.|+....++|.+++++.|+-+       
T Consensus        50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip-l---~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP-L---PSSWVMTCAYSPSGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe-c---CceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence            35589999999999999999998     35578776555431100 1   12478888999999999887644       


Q ss_pred             ------------eEEeeccccCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEec-CCCEEE-E
Q 022303          105 ------------IDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDF-DESKIV-G  168 (299)
Q Consensus       105 ------------~~~~~~h~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~-~~~~l~-~  168 (299)
                                  .+.+.+|++.+.|+.| +++.|+|++.|.+..+||+++++.+..|.+|...+ .++++| +++.++ |
T Consensus       126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg  205 (343)
T KOG0286|consen  126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG  205 (343)
T ss_pred             cccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence                        3456899999999999 55599999999999999999999999999997655 499999 888888 9


Q ss_pred             EcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc--ccCCceeEEEeCCC
Q 022303          169 LIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED  244 (299)
Q Consensus       169 ~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~  244 (299)
                      +.|+..++||++.+.  ..|.+|+..++. ++|.|++..+++|++|++.++||++..+.+..+.  .-..+|++++|+..
T Consensus       206 ~cD~~aklWD~R~~~c~qtF~ghesDINs-v~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S  284 (343)
T KOG0286|consen  206 GCDKSAKLWDVRSGQCVQTFEGHESDINS-VRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS  284 (343)
T ss_pred             ccccceeeeeccCcceeEeecccccccce-EEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence            999999999999885  678888888774 5899999999999999999999999988887775  23467999999988


Q ss_pred             -CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          245 -QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       245 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                       ++|++|..|.++.+||.-.++.+..+.+|++  .|.++..+|||..|++|||-
T Consensus       285 GRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWD  336 (343)
T KOG0286|consen  285 GRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWD  336 (343)
T ss_pred             ccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchh
Confidence             9999999999999999999999999999999  99999999999999999985

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.1e-35  Score=233.10  Aligned_cols=190  Identities=15%  Similarity=0.192  Sum_probs=173.6

Q ss_pred             eEEeeccccCeeEEEe-cC--C-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEe
Q 022303          105 IDQWKAHSVGVDQCRM-KR--G-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWR  178 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d  178 (299)
                      +.+|.||++.|.++.| |.  + .++||+.||++++|++++..++..+.+|...+. ++|+|+|++|. ++.|.+-++||
T Consensus       210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD  289 (459)
T KOG0272|consen  210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWD  289 (459)
T ss_pred             eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcc
Confidence            6788999999999999 54  3 899999999999999999999999999987666 99999999999 99999999999


Q ss_pred             cCCcee--eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCc
Q 022303          179 RNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS  255 (299)
Q Consensus       179 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~  255 (299)
                      +++...  ...+|...+. .++|.++|..+++|+.|..-+|||++++.++..+.+|..+|.+++|+|+ ..||||+.|++
T Consensus       290 ~~tk~ElL~QEGHs~~v~-~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt  368 (459)
T KOG0272|consen  290 LETKSELLLQEGHSKGVF-SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT  368 (459)
T ss_pred             cccchhhHhhcccccccc-eeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc
Confidence            998863  3455555544 4699999999999999999999999999999999999999999999999 88999999999


Q ss_pred             EEEEeCCCCceEEEeeccCCCCcEEEEEccC-CCCeEEeeecc
Q 022303          256 IAISGLSSDQRVATLRSTDCTGHIICLMYPQ-FLHMLFFLCFL  297 (299)
Q Consensus       256 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~s~s~~  297 (299)
                      ++|||++..+.+.++..|.+  -|+.++|+| .|.+|+++|.-
T Consensus       369 ~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g~fL~TasyD  409 (459)
T KOG0272|consen  369 CKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEGYFLVTASYD  409 (459)
T ss_pred             EEEeeecccccceecccccc--hhhheEecccCCeEEEEcccC
Confidence            99999999999999999999  899999999 78999999863

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.4e-34  Score=222.69  Aligned_cols=247  Identities=17%  Similarity=0.143  Sum_probs=211.9

Q ss_pred             CcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceee
Q 022303           20 PRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALE   99 (299)
Q Consensus        20 ~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~   99 (299)
                      .+.+|+.|+.+++...-.+.+|.+.|..++|+..|.++++                .+.|-.+++|+.+-.+...     
T Consensus       128 ~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~t----------------cSsDl~~~LWd~~~~~~c~-----  186 (406)
T KOG0295|consen  128 EDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLAT----------------CSSDLSAKLWDFDTFFRCI-----  186 (406)
T ss_pred             CCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEe----------------cCCccchhheeHHHHHHHH-----
Confidence            4789999999999998888899999999999999999998                4455556777543222222     


Q ss_pred             cCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEE
Q 022303          100 EGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRIC  175 (299)
Q Consensus       100 ~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~  175 (299)
                            +.+.+|...|.+++| |.+ ++++++.|.+|+.|++.++.++.++.+|..-+. ++.+.||.+++ ++.|.+++
T Consensus       187 ------ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~  260 (406)
T KOG0295|consen  187 ------KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLR  260 (406)
T ss_pred             ------HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEE
Confidence                  233699999999988 666 999999999999999999999999999977665 89999999999 99999999


Q ss_pred             EEecCCce--eeeeccCCccceeeeeccC---------------CCeEEEecCCCcEEEEEcCCcceeeeccccCCceeE
Q 022303          176 IWRRNGLR--SVFPSREGTFMKGLCMRYF---------------DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTS  238 (299)
Q Consensus       176 v~d~~~~~--~~~~~~~~~~~~~~~~~~~---------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~  238 (299)
                      +|-+.+.+  ..+..|+-.+. +++|.|.               ++.+.+++.|++|++||+.++.++.++.+|...|..
T Consensus       261 vW~~~t~~~k~~lR~hEh~vE-ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~  339 (406)
T KOG0295|consen  261 VWVVATKQCKAELREHEHPVE-CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRG  339 (406)
T ss_pred             EEEeccchhhhhhhccccceE-EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeee
Confidence            99999883  44555554333 4455443               245899999999999999999999999999999999


Q ss_pred             EEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          239 LSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       239 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ++|+|+ +||+++.+|+++++||+++++++.++..|+.  .++++.|+.+-.++++|+.
T Consensus       340 ~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDfh~~~p~VvTGsV  396 (406)
T KOG0295|consen  340 VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDFHKTAPYVVTGSV  396 (406)
T ss_pred             eEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEecCCCCceEEeccc
Confidence            999999 9999999999999999999999999999988  8999999999999999985

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.5e-35  Score=228.82  Aligned_cols=255  Identities=16%  Similarity=0.100  Sum_probs=206.3

Q ss_pred             HhhccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCcee-----
Q 022303           35 IFSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRID-----  104 (299)
Q Consensus        35 i~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~-----  104 (299)
                      -.++.+|.+.|.|++|+|++..|++     ++++|+.......    +.-...+.|+.++.++|+++.+++|..+     
T Consensus       108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~----~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l  183 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL----FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL  183 (480)
T ss_pred             ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc----eeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence            3457799999999999999999998     7889987443331    1112236788899999999988877654     


Q ss_pred             ---------eEEeeccccCeeEEEe-c-----CC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE
Q 022303          105 ---------IDQWKAHSVGVDQCRM-K-----RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV  167 (299)
Q Consensus       105 ---------~~~~~~h~~~i~~~~~-~-----~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~  167 (299)
                               .+.+.+|...|++++| |     +. +|++++.||+++|||+..++++..+.+|...+. +.|--++ +|+
T Consensus       184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liy  262 (480)
T KOG0271|consen  184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIY  262 (480)
T ss_pred             ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEE
Confidence                     4667899999999999 2     22 899999999999999999999999999986665 7775444 566


Q ss_pred             -EEcCCeEEEEecCCce--eeeeccCCcccee----------eeeccCC-------------------------CeEEEe
Q 022303          168 -GLIGTRICIWRRNGLR--SVFPSREGTFMKG----------LCMRYFD-------------------------PEAVVG  209 (299)
Q Consensus       168 -~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~----------~~~~~~~-------------------------~~l~s~  209 (299)
                       ++.|++|++|+...+.  ..+.+|...++.+          -+|.+.+                         ..+++|
T Consensus       263 SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg  342 (480)
T KOG0271|consen  263 SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG  342 (480)
T ss_pred             ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence             9999999999998754  3344443322211          1222222                         238999


Q ss_pred             cCCCcEEEEEcCC-cceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCC
Q 022303          210 CEDGTARVFDMYS-RKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQF  287 (299)
Q Consensus       210 ~~d~~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  287 (299)
                      ++|.++.+|+... .+++..+.+|...|+.+.|+|| +++|+++.|.+|++||-++|+.+.++++|-.  +|+.++|+.|
T Consensus       343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~--~VYqvawsaD  420 (480)
T KOG0271|consen  343 SDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA--AVYQVAWSAD  420 (480)
T ss_pred             cCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc--eeEEEEeccC
Confidence            9999999999765 4477788899999999999999 9999999999999999999999999999998  9999999999


Q ss_pred             CCeEEeeec
Q 022303          288 LHMLFFLCF  296 (299)
Q Consensus       288 g~~l~s~s~  296 (299)
                      .++|++||-
T Consensus       421 sRLlVS~Sk  429 (480)
T KOG0271|consen  421 SRLLVSGSK  429 (480)
T ss_pred             ccEEEEcCC
Confidence            999999985

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=8.6e-34  Score=240.68  Aligned_cols=241  Identities=20%  Similarity=0.243  Sum_probs=198.7

Q ss_pred             ccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhc--CCC----CC----CCchhhhhhhhhhhccccceeecCceee
Q 022303           41 FFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLH--GFS----NT----SGSSMRLHLEELAMKHHRFALEEGRIDI  105 (299)
Q Consensus        41 h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~--~~~----~~----~d~~~~~~~~~~~~~~~~~~l~~g~~~~  105 (299)
                      -...++|..|+.+...+|.     .+.+|...-.+..  +..    .+    .|....+.            -..+....
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~------------D~~~~~~~  444 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDML------------DDDSSGTS  444 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhc------------cccCCcee
Confidence            4457899999999998887     3445544221110  000    00    11110000            01222235


Q ss_pred             EEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCC
Q 022303          106 DQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNG  181 (299)
Q Consensus       106 ~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~  181 (299)
                      +++.||.++|..+.| |+. +|+++|.|+++++|.+.+..++-.+++|..++. +.|+|-|-+++ ++.|++.++|....
T Consensus       445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~  524 (707)
T KOG0263|consen  445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH  524 (707)
T ss_pred             EEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence            668999999999999 666 999999999999999999999999999987776 99999999999 99999999999875


Q ss_pred             c--eeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEE
Q 022303          182 L--RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI  258 (299)
Q Consensus       182 ~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~i  258 (299)
                      .  ..++.+|.+.+. ++.|+|+..++++|+.|.++++||+.+|..++.|.+|.++|.+++|+|. ++|++|+.||.|.+
T Consensus       525 ~~PlRifaghlsDV~-cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~i  603 (707)
T KOG0263|consen  525 NKPLRIFAGHLSDVD-CVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKI  603 (707)
T ss_pred             CCchhhhcccccccc-eEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEE
Confidence            4  477777777655 6799999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             EeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          259 SGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       259 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ||+.+++.+..+.+|.+  .|.++.|+.+|..||+|+.
T Consensus       604 WDl~~~~~v~~l~~Ht~--ti~SlsFS~dg~vLasgg~  639 (707)
T KOG0263|consen  604 WDLANGSLVKQLKGHTG--TIYSLSFSRDGNVLASGGA  639 (707)
T ss_pred             EEcCCCcchhhhhcccC--ceeEEEEecCCCEEEecCC
Confidence            99999999999999977  9999999999999999985

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.3e-33  Score=207.73  Aligned_cols=256  Identities=14%  Similarity=0.137  Sum_probs=214.2

Q ss_pred             CCCCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhh
Q 022303           10 SPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEEL   89 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~   89 (299)
                      -+|--..+.+++.+|+.|...++.+..++....+-|+.+.+.|+...||..                 ....+|+|..  
T Consensus         8 d~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa-----------------~~qhvRlyD~--   68 (311)
T KOG0315|consen    8 DDPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAA-----------------GNQHVRLYDL--   68 (311)
T ss_pred             CCceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhc-----------------cCCeeEEEEc--
Confidence            355566778899999999999999999998888899999999999999861                 2234566632  


Q ss_pred             hhccccceeecCce-eeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEE
Q 022303           90 AMKHHRFALEEGRI-DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKI  166 (299)
Q Consensus        90 ~~~~~~~~l~~g~~-~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l  166 (299)
                               .++.. ++.+|.+|++.|+++.| .++ .++||+.||+++|||++...+.+.++...++..+..+|+..-|
T Consensus        69 ---------~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteL  139 (311)
T KOG0315|consen   69 ---------NSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTEL  139 (311)
T ss_pred             ---------cCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceE
Confidence                     22222 47788999999999999 455 9999999999999999998888899988888889999988777


Q ss_pred             E-EEcCCeEEEEecCCceee---eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc------ceeeeccccCCce
Q 022303          167 V-GLIGTRICIWRRNGLRSV---FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR------KCSQIIRMHCAPV  236 (299)
Q Consensus       167 ~-~~~d~~i~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~~~~~~i  236 (299)
                      + +..+|.|++||+......   ..... .....+.+.+++.+++.+...|..++|++-..      +++..++.|.+.+
T Consensus       140 is~dqsg~irvWDl~~~~c~~~liPe~~-~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~i  218 (311)
T KOG0315|consen  140 ISGDQSGNIRVWDLGENSCTHELIPEDD-TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHI  218 (311)
T ss_pred             EeecCCCcEEEEEccCCccccccCCCCC-cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceE
Confidence            7 999999999999987532   22222 22334688999999999999999999998654      3455677899999


Q ss_pred             eEEEeCCC-CeEEEEeCCCcEEEEeCCCC-ceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          237 TSLSLSED-QLIISGSSLGSIAISGLSSD-QRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       237 ~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ..+.++|| ++||+++.|.+++||+..+. +....+++|..  .++.++||.||+||++|+-
T Consensus       219 l~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r--WvWdc~FS~dg~YlvTass  278 (311)
T KOG0315|consen  219 LRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR--WVWDCAFSADGEYLVTASS  278 (311)
T ss_pred             EEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc--eEEeeeeccCccEEEecCC
Confidence            99999999 99999999999999999887 66677888887  9999999999999999984

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=7.4e-33  Score=215.12  Aligned_cols=271  Identities=18%  Similarity=0.229  Sum_probs=207.2

Q ss_pred             cchhccCc----HHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCC---------------CC-----
Q 022303           21 RATIESLN----GDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGF---------------SN-----   76 (299)
Q Consensus        21 ~~~~~~~~----~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~---------------~~-----   76 (299)
                      .+.+..+|    .++.+.|+++++..++..|-.+|+.|..+++...+|+.++.+..+.               ..     
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr~dslWrgl~e~rqw~~~lf~~r~  151 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVRTDSLWRGLSERRQWDQYLFKNRP  151 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcchHHHHhhhhhccCcchhhccCCC
Confidence            45677888    7888899999999999999999999999999888888755443210               00     


Q ss_pred             ------CCCchhhhhhhhh-hhccccceeecCcee-------------------------------------------eE
Q 022303           77 ------TSGSSMRLHLEEL-AMKHHRFALEEGRID-------------------------------------------ID  106 (299)
Q Consensus        77 ------~~d~~~~~~~~~~-~~~~~~~~l~~g~~~-------------------------------------------~~  106 (299)
                            +......+|-.-+ .......+|..|...                                           .+
T Consensus       152 ~~~~~~~n~f~~~l~pki~~di~~idsNWr~Gr~~~~rinc~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~  231 (499)
T KOG0281|consen  152 NDGGFPPNSFYRLLYPKIIQDIETIESNWRCGRHLLQRINCRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLK  231 (499)
T ss_pred             CcCCcCCCcchhhhhHHHHHHHhhhhcchhccceeeeeecCCcccCCceEEEEecchhhhcccccCceEEeccccHHHHH
Confidence                  0111111111100 000111112222111                                           23


Q ss_pred             EeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce-
Q 022303          107 QWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR-  183 (299)
Q Consensus       107 ~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~-  183 (299)
                      ++.||++.|.|+.|.+..+++|+.|.+|++||+++++++.++-+|...+. +.|+  +.+++ ++.|.++.+||+..+. 
T Consensus       232 ~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~  309 (499)
T KOG0281|consen  232 ILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTD  309 (499)
T ss_pred             hhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchH
Confidence            44799999999999888999999999999999999999999988865554 7775  45666 9999999999998775 


Q ss_pred             -eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022303          184 -SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLS  262 (299)
Q Consensus       184 -~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~  262 (299)
                       .......++...+-.+.++++++++++.|.+|++|++.+++.++++.+|...|.|+++ .++++++|++|.+|++||+.
T Consensus       310 it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY-r~rlvVSGSSDntIRlwdi~  388 (499)
T KOG0281|consen  310 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIE  388 (499)
T ss_pred             HHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhc-cCeEEEecCCCceEEEEecc
Confidence             1222333444445578889999999999999999999999999999999999999987 45799999999999999999


Q ss_pred             CCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          263 SDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       263 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      .|.+++.+++|++  -|.++.|  |.+.+++|++-|
T Consensus       389 ~G~cLRvLeGHEe--LvRciRF--d~krIVSGaYDG  420 (499)
T KOG0281|consen  389 CGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDG  420 (499)
T ss_pred             ccHHHHHHhchHH--hhhheee--cCceeeeccccc
Confidence            9999999999999  8999999  677888887643

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-31  Score=198.90  Aligned_cols=234  Identities=19%  Similarity=0.243  Sum_probs=187.6

Q ss_pred             hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCee
Q 022303           37 SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVD  116 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~  116 (299)
                      .+.+|++.|+.++..+....++.               ...-|.++-+|  .+...  .   ..-+..++.|+||...|.
T Consensus        10 tl~gh~d~Vt~la~~~~~~~~l~---------------sasrDk~ii~W--~L~~d--d---~~~G~~~r~~~GHsH~v~   67 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIKNSDILV---------------SASRDKTIIVW--KLTSD--D---IKYGVPVRRLTGHSHFVS   67 (315)
T ss_pred             eecCCCceEEEEEeecCCCceEE---------------EcccceEEEEE--EeccC--c---cccCceeeeeeccceEec
Confidence            45589999999988887544442               01133333344  22211  0   111234677899999999


Q ss_pred             EEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeee-eccC-
Q 022303          117 QCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVF-PSRE-  190 (299)
Q Consensus       117 ~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~-~~~~-  190 (299)
                      .+.. +++ +.+++++|+++++||+.+++..+.|.+|...+. ++|++|.+.++ ++.|.++++|++.+..... .... 
T Consensus        68 dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~  147 (315)
T KOG0279|consen   68 DVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSH  147 (315)
T ss_pred             ceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCC
Confidence            9988 666 999999999999999999999999999976554 99999999999 9999999999998875322 2221 


Q ss_pred             CccceeeeeccC--CCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceE
Q 022303          191 GTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV  267 (299)
Q Consensus       191 ~~~~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~  267 (299)
                      ..-..+++|+|.  ++.+++++.|+++++||+++.+....+.+|.+.++.++++|| .+.++|+.||.+.+||++.++.+
T Consensus       148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l  227 (315)
T KOG0279|consen  148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL  227 (315)
T ss_pred             cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee
Confidence            223346788888  567999999999999999999999999999999999999999 99999999999999999999999


Q ss_pred             EEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          268 ATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       268 ~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      +++....   .|.+++|+|+...|+++.
T Consensus       228 ysl~a~~---~v~sl~fspnrywL~~at  252 (315)
T KOG0279|consen  228 YSLEAFD---IVNSLCFSPNRYWLCAAT  252 (315)
T ss_pred             EeccCCC---eEeeEEecCCceeEeecc
Confidence            9887665   899999999988887654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.98  E-value=1.5e-31  Score=201.94  Aligned_cols=247  Identities=19%  Similarity=0.208  Sum_probs=194.9

Q ss_pred             CCCcchhccCcH-----HHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhc
Q 022303           18 SKPRATIESLNG-----DIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMK   92 (299)
Q Consensus        18 ~~~~~~~~~~~~-----~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (299)
                      ...+..+-.|+.     +.+..+..+.+|.-.|..+..++++++.++                ...|...|+|  ++..+
T Consensus        34 asrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS----------------~swD~~lrlW--Dl~~g   95 (315)
T KOG0279|consen   34 ASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS----------------ASWDGTLRLW--DLATG   95 (315)
T ss_pred             cccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe----------------ccccceEEEE--EecCC
Confidence            334555555553     444556677899999999999999999987                4578888999  43333


Q ss_pred             cccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCC---CceeEEEEecC--CCE
Q 022303           93 HHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFD--ESK  165 (299)
Q Consensus        93 ~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~--~~~  165 (299)
                                ...+.|.||...|.+++| +++ ++++|+.|.+|++|++.. .+..++..+   +-+.++.|+|+  +..
T Consensus        96 ----------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~  164 (315)
T KOG0279|consen   96 ----------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPI  164 (315)
T ss_pred             ----------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence                      334555899999999999 556 999999999999999874 455444432   34445999998  566


Q ss_pred             EE-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeC
Q 022303          166 IV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS  242 (299)
Q Consensus       166 l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  242 (299)
                      |+ ++.|++|++||+++.+  ..+..|.+... .+.++|++...++|+.||.+.+||++.++.++.+ .+...|.+++|+
T Consensus       165 Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~-t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fs  242 (315)
T KOG0279|consen  165 IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVN-TVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFS  242 (315)
T ss_pred             EEEccCCceEEEEccCCcchhhccccccccEE-EEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEec
Confidence            77 9999999999999875  45556665555 4689999999999999999999999999998888 678999999999


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCC-------CcEEEEEccCCCCeEEeee
Q 022303          243 EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCT-------GHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       243 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~i~~~~~s~~g~~l~s~s  295 (299)
                      |+++.+++..+..|+|||+.+++++..++....+       ..-.+++|++||..|++|-
T Consensus       243 pnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~  302 (315)
T KOG0279|consen  243 PNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY  302 (315)
T ss_pred             CCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence            9977777777888999999999888777543321       1346789999999999874

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.98  E-value=2.2e-31  Score=213.97  Aligned_cols=266  Identities=15%  Similarity=0.118  Sum_probs=214.0

Q ss_pred             HHHHHHhhccCccchhhHHHhhhhHH-HHhh-----hhhHHHHHHhhh------c-CCCC---CCCchhhhhhhhhhhcc
Q 022303           30 DIICMIFSSLGFFDLVRCSAVCKSWN-AIIN-----RCKLLQLLYCKL------H-GFSN---TSGSSMRLHLEELAMKH   93 (299)
Q Consensus        30 ~~~~~i~~~~~h~~~v~~~~~~~~~~-~l~~-----~~~~w~~~~~~~------~-~~~~---~~d~~~~~~~~~~~~~~   93 (299)
                      ++....++.+.|...|.+++|+|... .++.     +.++|++.....      . +...   ..+..-.--+.++.++.
T Consensus       166 ~I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~  245 (524)
T KOG0273|consen  166 EIPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN  245 (524)
T ss_pred             cccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC
Confidence            44455667778999999999999988 5555     566776643000      0 0000   01111111234667788


Q ss_pred             ccceeecCcee------------eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCce-eEEE
Q 022303           94 HRFALEEGRID------------IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SLVD  158 (299)
Q Consensus        94 ~~~~l~~g~~~------------~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~  158 (299)
                      ++..|+.|...            +.+|..|.++|.++.| ..+ ||++++.|+++.+||..+++..+.+..|+.+ ..+.
T Consensus       246 ~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVd  325 (524)
T KOG0273|consen  246 DGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVD  325 (524)
T ss_pred             CCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceE
Confidence            88888887765            4566789999999999 344 9999999999999999999999999998877 4588


Q ss_pred             EecCCCEEEEEcCCeEEEEecCCc--eeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCce
Q 022303          159 FDFDESKIVGLIGTRICIWRRNGL--RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPV  236 (299)
Q Consensus       159 ~~~~~~~l~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i  236 (299)
                      |-.+..+..++.|+.|+|+.+...  ...+..|.+.+. ++.|++.+..|+++++|++++||+.........+..|...|
T Consensus       326 W~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~-alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei  404 (524)
T KOG0273|consen  326 WQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVN-ALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEI  404 (524)
T ss_pred             EecCceEeecCCCceEEEEEecCCCcceeeecccCceE-EEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccce
Confidence            877666666999999999988654  577778888766 56888889999999999999999999888889999999999


Q ss_pred             eEEEeCCC----------CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          237 TSLSLSED----------QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       237 ~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      ..+.|+|.          ..+++++.|++|++||+..+.++.++..|..  +|++++|+|+|+|||+|++-+
T Consensus       405 ~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysvafS~~g~ylAsGs~dg  474 (524)
T KOG0273|consen  405 YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSVAFSPNGRYLASGSLDG  474 (524)
T ss_pred             eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEEEecCCCcEEEecCCCC
Confidence            99999873          3799999999999999999999999999999  999999999999999999754

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.97  E-value=1.5e-31  Score=227.08  Aligned_cols=229  Identities=19%  Similarity=0.268  Sum_probs=196.4

Q ss_pred             hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCee
Q 022303           37 SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVD  116 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~  116 (299)
                      .+.+|.+.|..+.|+|+.++|++                ..+|.++|+|  ++...          ..+-.++||..||+
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlS----------------cSED~svRLW--sl~t~----------s~~V~y~GH~~PVw  497 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLS----------------CSEDSSVRLW--SLDTW----------SCLVIYKGHLAPVW  497 (707)
T ss_pred             EeecCCCceeeeeecccccceee----------------ccCCcceeee--ecccc----------eeEEEecCCCccee
Confidence            47799999999999999999998                5588999999  32221          22345689999999


Q ss_pred             EEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccC
Q 022303          117 QCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSRE  190 (299)
Q Consensus       117 ~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~  190 (299)
                      .+.| |-+ |+||+|.|++.++|.....++++.+.+|-..+. +.|+|+..+++ |+.|.+|++||+.++.  .+|.+|.
T Consensus       498 dV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~  577 (707)
T KOG0263|consen  498 DVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK  577 (707)
T ss_pred             eEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC
Confidence            9999 777 999999999999999999999999999866665 99999999999 9999999999999875  7788888


Q ss_pred             CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc----
Q 022303          191 GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ----  265 (299)
Q Consensus       191 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~----  265 (299)
                      +.+. +++++|.+.+|++|+.|+.|.+||+.+++.+..+.+|.+.|.++.|+.+ ..||+|+.|.+|++||+..-.    
T Consensus       578 ~~V~-al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~  656 (707)
T KOG0263|consen  578 GPVT-ALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLN  656 (707)
T ss_pred             CceE-EEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccc
Confidence            8766 5699999999999999999999999999999999999999999999999 999999999999999985321    


Q ss_pred             --------------------eEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          266 --------------------RVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       266 --------------------~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                                          ++.++.....  +|.++.|....-.|+.|.+
T Consensus       657 ~~~~~~~~~~~~~~~~~~~~llgs~~tK~t--pv~~l~FtrrNl~L~~g~~  705 (707)
T KOG0263|consen  657 LGHISTSNSAITQENNASSLLLGSFYTKNT--PVVGLHFTRRNLLLAVGPF  705 (707)
T ss_pred             ccccccccccccccCCCCcceeeeeeecCc--eEEEEEEeccceeEEeccc
Confidence                                3344444444  8999999987766666654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=7.1e-32  Score=213.28  Aligned_cols=255  Identities=17%  Similarity=0.154  Sum_probs=206.0

Q ss_pred             CCCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhh
Q 022303           11 PPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELA   90 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~   90 (299)
                      ..+|.-.+...-.+.+|+.....--+=+..|.+.|+++.+++++.++++                ...++.+|.|..  .
T Consensus       107 eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiS----------------gD~gG~iKyWqp--n  168 (464)
T KOG0284|consen  107 EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMIS----------------GDKGGMIKYWQP--N  168 (464)
T ss_pred             CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEE----------------cCCCceEEeccc--c
Confidence            3455555666677888887443222223489999999999999999998                446677777722  1


Q ss_pred             hccccceeecCceeeEEeeccc-cCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEE
Q 022303           91 MKHHRFALEEGRIDIDQWKAHS-VGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKI  166 (299)
Q Consensus        91 ~~~~~~~l~~g~~~~~~~~~h~-~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l  166 (299)
                      +           ..++.+++|. ..|.+++| |++ .+++++.||+|+|||....+....+.+|...+. ++|+|...++
T Consensus       169 m-----------nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLi  237 (464)
T KOG0284|consen  169 M-----------NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLI  237 (464)
T ss_pred             h-----------hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcccee
Confidence            1           1223334554 99999999 544 999999999999999999999888999986655 9999999999


Q ss_pred             E-EEcCCeEEEEecCCceeee--eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCC
Q 022303          167 V-GLIGTRICIWRRNGLRSVF--PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE  243 (299)
Q Consensus       167 ~-~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~  243 (299)
                      + ++.|..|++||.+++.++.  ..|...+. .+.|++++++|++++.|..++++|+++-+.++.+++|...++++.|+|
T Consensus       238 asgskDnlVKlWDprSg~cl~tlh~HKntVl-~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP  316 (464)
T KOG0284|consen  238 ASGSKDNLVKLWDPRSGSCLATLHGHKNTVL-AVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHP  316 (464)
T ss_pred             EEccCCceeEeecCCCcchhhhhhhccceEE-EEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccc
Confidence            9 9999999999999987554  44444443 357888899999999999999999999899999999999999999999


Q ss_pred             C--CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          244 D--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       244 ~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      =  .+|.+|+.||.|..|.+...+++..+...+.. .|++++|+|=|.+|++|+-
T Consensus       317 ~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~-~iwsl~~hPlGhil~tgsn  370 (464)
T KOG0284|consen  317 LNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDG-EIWSLAYHPLGHILATGSN  370 (464)
T ss_pred             ccccceeeccCCCceEEEeccccccccCCCccccc-ceeeeeccccceeEeecCC
Confidence            5  89999999999999999877777777654444 8999999999999999874

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=1.2e-28  Score=187.50  Aligned_cols=188  Identities=19%  Similarity=0.217  Sum_probs=165.0

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCC-ceeEEEEecCCCEEE-EEcCCeEEEEecC
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV-GLIGTRICIWRRN  180 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~d~~i~v~d~~  180 (299)
                      -++++||.+.|.++.| ++. +|++++.||.+.|||.-|...++.++.+. .+..++|+|.++.++ |+-|+...||++.
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls  127 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS  127 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence            4788999999999999 555 99999999999999999888888888775 455699999999999 9999999999998


Q ss_pred             Cc--e------eeeeccCCccceeeeeccC-CCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCC-C-CeEEE
Q 022303          181 GL--R------SVFPSREGTFMKGLCMRYF-DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-D-QLIIS  249 (299)
Q Consensus       181 ~~--~------~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~~  249 (299)
                      +.  +      ..+..|.+-..   |..+. +..|++++.|.+..+||+++++.+..|.+|.+.|.++.++| + +.+++
T Consensus       128 ~~d~~g~~~v~r~l~gHtgylS---cC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvS  204 (343)
T KOG0286|consen  128 TRDAEGNVRVSRELAGHTGYLS---CCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVS  204 (343)
T ss_pred             cccccccceeeeeecCccceeE---EEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEe
Confidence            55  2      23445554433   33333 55599999999999999999999999999999999999999 6 99999


Q ss_pred             EeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          250 GSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       250 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      |+-|+..++||++.+.++++|.+|+.  -|++++|.|+|.-+++||--
T Consensus       205 g~cD~~aklWD~R~~~c~qtF~ghes--DINsv~ffP~G~afatGSDD  250 (343)
T KOG0286|consen  205 GGCDKSAKLWDVRSGQCVQTFEGHES--DINSVRFFPSGDAFATGSDD  250 (343)
T ss_pred             cccccceeeeeccCcceeEeeccccc--ccceEEEccCCCeeeecCCC
Confidence            99999999999999999999999999  89999999999999999854

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=8.4e-30  Score=219.57  Aligned_cols=253  Identities=18%  Similarity=0.206  Sum_probs=211.9

Q ss_pred             CCCCCCcchhccCcHHHHH--HHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhc
Q 022303           15 KRSSKPRATIESLNGDIIC--MIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMK   92 (299)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~--~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (299)
                      ......+..+..|..+...  .+..+.+|...|+.++|++++.++++                ...|.++|+|..     
T Consensus       174 l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s----------------~s~D~tiriwd~-----  232 (456)
T KOG0266|consen  174 LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLS----------------GSDDKTLRIWDL-----  232 (456)
T ss_pred             EEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEE----------------ecCCceEEEeec-----
Confidence            3344467788888886666  56666799999999999999999987                457888899932     


Q ss_pred             cccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-E
Q 022303           93 HHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-G  168 (299)
Q Consensus        93 ~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~  168 (299)
                            ......++++++|...|+++.| +.+ ++++|+.|++|++||+.+++++..+..|...+. ++|+++++.++ +
T Consensus       233 ------~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~  306 (456)
T KOG0266|consen  233 ------KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA  306 (456)
T ss_pred             ------cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc
Confidence                  2333446788999999999999 555 999999999999999999999999999987666 99999999999 8


Q ss_pred             EcCCeEEEEecCCcee----eeeccCCc-cceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCce---eEEE
Q 022303          169 LIGTRICIWRRNGLRS----VFPSREGT-FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPV---TSLS  240 (299)
Q Consensus       169 ~~d~~i~v~d~~~~~~----~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i---~~~~  240 (299)
                      +.|+.|++||+.++..    .+...... ....+++++++.+++++..|+.+++||+..++....+.+|...+   .+..
T Consensus       307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~  386 (456)
T KOG0266|consen  307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT  386 (456)
T ss_pred             CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence            8899999999998872    33444444 34467899999999999999999999999999999998877643   3344


Q ss_pred             eCCC-CeEEEEeCCCcEEEEeCCCCceEEEeecc-CCCCcEEEEEccCCCCeEEeeec
Q 022303          241 LSED-QLIISGSSLGSIAISGLSSDQRVATLRST-DCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       241 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      .+++ .++++|+.|+.|++||+.++..+..+.+| ..  .+..++++|...+++++++
T Consensus       387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~--~~~~~~~~~~~~~~~s~s~  442 (456)
T KOG0266|consen  387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKA--AVSDLSSHPTENLIASSSF  442 (456)
T ss_pred             ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCC--ceeccccCCCcCeeeecCc
Confidence            4566 89999999999999999999999999999 55  8999999999999999874

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.5e-29  Score=217.39  Aligned_cols=247  Identities=18%  Similarity=0.185  Sum_probs=210.1

Q ss_pred             CCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcccccee
Q 022303           19 KPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFAL   98 (299)
Q Consensus        19 ~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l   98 (299)
                      ..+..|++|+..++..+-.|.+|.+.|+.++|+|+....++                ..+|..+|+|..  ..       
T Consensus        28 lHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVS----------------GGDDykIkVWnY--k~-------   82 (1202)
T KOG0292|consen   28 LHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVS----------------GGDDYKIKVWNY--KT-------   82 (1202)
T ss_pred             ecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEe----------------cCCccEEEEEec--cc-------
Confidence            35778999999999999999999999999999999999987                447888899943  11       


Q ss_pred             ecCceeeEEeeccccCeeEEEecCC--EEEEEeCCCcEEEEecCCceeEEEecCCC-ceeEEEEecCCCEEE-EEcCCeE
Q 022303           99 EEGRIDIDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV-GLIGTRI  174 (299)
Q Consensus        99 ~~g~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~d~~i  174 (299)
                         ...+.++.||-+.|..+.|..+  .++++|.|.+|+||+.++.+++..+.+|. .+.+..|+|...+++ ++-|.+|
T Consensus        83 ---rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTV  159 (1202)
T KOG0292|consen   83 ---RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTV  159 (1202)
T ss_pred             ---ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceE
Confidence               1223456899999999999655  99999999999999999999999999886 556699999999999 9999999


Q ss_pred             EEEecCCce-------------------------------eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc
Q 022303          175 CIWRRNGLR-------------------------------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR  223 (299)
Q Consensus       175 ~v~d~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  223 (299)
                      +|||+.+-+                               .++.+|...++++ +|+|.-+.+++|++|..|++|.+...
T Consensus       160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa-AfhpTlpliVSG~DDRqVKlWrmnet  238 (1202)
T KOG0292|consen  160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA-AFHPTLPLIVSGADDRQVKLWRMNET  238 (1202)
T ss_pred             EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE-EecCCcceEEecCCcceeeEEEeccc
Confidence            999986411                               2334444445544 78888899999999999999998754


Q ss_pred             c--eeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          224 K--CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       224 ~--~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +  .+.+..+|...|.++-|+|. +++++.++|++|+|||+...+.+++++...+  ..+.++-+|..+++++|--
T Consensus       239 KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend--RFW~laahP~lNLfAAgHD  312 (1202)
T KOG0292|consen  239 KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND--RFWILAAHPELNLFAAGHD  312 (1202)
T ss_pred             cceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC--eEEEEEecCCcceeeeecC
Confidence            4  35566799999999999998 8999999999999999999999999998888  8999999999999998743

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=7.9e-29  Score=193.30  Aligned_cols=189  Identities=15%  Similarity=0.165  Sum_probs=167.3

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecC
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRN  180 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~  180 (299)
                      .+++++|.+-|.|+++ |.+ .+++|+.|++++|||+.+|++..++.+|-..+. +++++-..+++ ++.|+.|+.||+.
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe  223 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE  223 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence            4556899999999999 555 999999999999999999999999999877776 99999999999 9999999999999


Q ss_pred             Cceee--eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEE
Q 022303          181 GLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA  257 (299)
Q Consensus       181 ~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~  257 (299)
                      ..+.+  +.+|-..+. +++..|.-..|++|+.|..+++||+++...+..+.+|..+|.++.+.|- -.+++|+.|++|+
T Consensus       224 ~nkvIR~YhGHlS~V~-~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr  302 (460)
T KOG0285|consen  224 YNKVIRHYHGHLSGVY-CLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR  302 (460)
T ss_pred             hhhhHHHhccccceeE-EEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence            88633  334433332 4566777888999999999999999999999999999999999999986 7799999999999


Q ss_pred             EEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          258 ISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       258 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +||++.|+.+.++..|..  .|++++.+|....+|++|-
T Consensus       303 lWDl~agkt~~tlt~hkk--svral~lhP~e~~fASas~  339 (460)
T KOG0285|consen  303 LWDLRAGKTMITLTHHKK--SVRALCLHPKENLFASASP  339 (460)
T ss_pred             EeeeccCceeEeeecccc--eeeEEecCCchhhhhccCC
Confidence            999999999999999888  8999999999999998873

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=1.1e-28  Score=185.43  Aligned_cols=227  Identities=15%  Similarity=0.221  Sum_probs=190.2

Q ss_pred             hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCee
Q 022303           37 SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVD  116 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~  116 (299)
                      .+.+|+-.++.++++++|.+|.+                ...|.+..+|..     .       .+..+-+|.||++.|+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFs----------------caKD~~~~vw~s-----~-------nGerlGty~GHtGavW   56 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFS----------------CAKDSTPTVWYS-----L-------NGERLGTYDGHTGAVW   56 (327)
T ss_pred             ccccCccccceEEecCCCcEEEE----------------ecCCCCceEEEe-----c-------CCceeeeecCCCceEE
Confidence            45689999999999999999987                335666667732     2       3334578899999999


Q ss_pred             EEEec--CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcC------CeEEEEecCCce-----
Q 022303          117 QCRMK--RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIG------TRICIWRRNGLR-----  183 (299)
Q Consensus       117 ~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d------~~i~v~d~~~~~-----  183 (299)
                      |+...  ..+++||+.|.++++||+++|+.+..++.+..+..+.|++++++++.+.|      +.|.++|++...     
T Consensus        57 ~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s  136 (327)
T KOG0643|consen   57 CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDS  136 (327)
T ss_pred             EEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcc
Confidence            99884  33999999999999999999999999999999999999999999885554      379999998432     


Q ss_pred             ----eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcc-eeeeccccCCceeEEEeCCC-CeEEEEeCCCcEE
Q 022303          184 ----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA  257 (299)
Q Consensus       184 ----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~  257 (299)
                          ..+..+..... ...|.+.++.|++|..||.|.+||+++++ .+...+.|...|+.++++++ .++++++.|.+-+
T Consensus       137 ~ep~~kI~t~~skit-~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttak  215 (327)
T KOG0643|consen  137 EEPYLKIPTPDSKIT-SALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAK  215 (327)
T ss_pred             cCceEEecCCcccee-eeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccce
Confidence                33344444443 45799999999999999999999999975 45566789999999999999 9999999999999


Q ss_pred             EEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          258 ISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       258 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      +||.++-++++++....   ||++.+++|....++.|+
T Consensus       216 l~D~~tl~v~Kty~te~---PvN~aaisP~~d~VilgG  250 (327)
T KOG0643|consen  216 LVDVRTLEVLKTYTTER---PVNTAAISPLLDHVILGG  250 (327)
T ss_pred             eeeccceeeEEEeeecc---cccceecccccceEEecC
Confidence            99999999999998776   899999999888777765

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=4.1e-29  Score=190.57  Aligned_cols=235  Identities=15%  Similarity=0.106  Sum_probs=180.9

Q ss_pred             HHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeecccc
Q 022303           34 MIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSV  113 (299)
Q Consensus        34 ~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~  113 (299)
                      .+..+.+|.+.|.+++|+|++..+|+                ...|..+-+|..   ++....        .-++++|.+
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aS----------------gG~Dr~I~LWnv---~gdceN--------~~~lkgHsg   91 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFAS----------------GGSDRAIVLWNV---YGDCEN--------FWVLKGHSG   91 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEee----------------cCCcceEEEEec---cccccc--------eeeeccccc
Confidence            45567799999999999999999998                234554545521   111122        235589999


Q ss_pred             CeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE--EEcCCeEEEEecCCceeeeec
Q 022303          114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV--GLIGTRICIWRRNGLRSVFPS  188 (299)
Q Consensus       114 ~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~  188 (299)
                      +|..+.| .++ .+++++.|.+++.||+++|+.++.++.|...+. ++...-|..++  ++.|+++++||+++...+...
T Consensus        92 AVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~  171 (338)
T KOG0265|consen   92 AVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF  171 (338)
T ss_pred             eeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc
Confidence            9999999 555 999999999999999999999999999988877 66555565665  888999999999977544333


Q ss_pred             cCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC-----
Q 022303          189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS-----  262 (299)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~-----  262 (299)
                      ...-....++|...+..+.+|+-|+.|++||++.......+.+|.++|+.+..+|+ .++.+-+.|.++++||++     
T Consensus       172 ~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~  251 (338)
T KOG0265|consen  172 ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS  251 (338)
T ss_pred             ccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence            22222335677777888999999999999999988888888888888888766666 666666666666666654     


Q ss_pred             ---------------------------------------------CCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          263 ---------------------------------------------SDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       263 ---------------------------------------------~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                                                                   ....+..+.+|.+  .|.++.|+|...+|.+++.-
T Consensus       252 ~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sd  329 (338)
T KOG0265|consen  252 QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSD  329 (338)
T ss_pred             CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccC
Confidence                                                         3345666777777  89999999999999998864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=2.4e-28  Score=206.75  Aligned_cols=242  Identities=16%  Similarity=0.249  Sum_probs=199.9

Q ss_pred             ccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCcee
Q 022303           25 ESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRID  104 (299)
Q Consensus        25 ~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~  104 (299)
                      -.|....-.=|++..+|...++|++++|+|+++|+                ..+|+.+|+|..            ..+..
T Consensus       333 lVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaT----------------G~eDgKVKvWn~------------~SgfC  384 (893)
T KOG0291|consen  333 LVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIAT----------------GAEDGKVKVWNT------------QSGFC  384 (893)
T ss_pred             EEEEeeccceeeeccccccceeeEEECCCCcEEEe----------------ccCCCcEEEEec------------cCceE
Confidence            34555555567888899999999999999999998                558899999943            34456


Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE--EEEecCCCEEE-EEcCC-eEEEEe
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL--VDFDFDESKIV-GLIGT-RICIWR  178 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~-~~~d~-~i~v~d  178 (299)
                      +.+|..|++.|+.+.| ..+ .+++.+-||+|+.||+......+++..+.+...  ++.+|.|.+++ |+.|. .|++|+
T Consensus       385 ~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS  464 (893)
T KOG0291|consen  385 FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWS  464 (893)
T ss_pred             EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEE
Confidence            7788999999999999 444 999999999999999999999999998876654  88888899988 77776 899999


Q ss_pred             cCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC-CeEEEEeCCC
Q 022303          179 RNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSSLG  254 (299)
Q Consensus       179 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg  254 (299)
                      +++++  -++.+|++++. .+++++.+..|++++.|.+|++||+-.. ..+.++ .+...+..++|.|+ +.+++++.||
T Consensus       465 ~qTGqllDiLsGHEgPVs-~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldg  542 (893)
T KOG0291|consen  465 VQTGQLLDILSGHEGPVS-GLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDG  542 (893)
T ss_pred             eecCeeeehhcCCCCcce-eeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecc
Confidence            99996  56788888876 4589999999999999999999998754 344555 45667999999999 9999999999


Q ss_pred             cEEEEeCCCCceEEEeeccCC------------------CCcEEEEEccCCCCeEEeeec
Q 022303          255 SIAISGLSSDQRVATLRSTDC------------------TGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       255 ~i~iwd~~~~~~~~~~~~~~~------------------~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      .|.+||...+..+.++.+...                  ..+.+.+++++||.++++|+.
T Consensus       543 qItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~  602 (893)
T KOG0291|consen  543 QITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE  602 (893)
T ss_pred             eEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC
Confidence            999999987665544432111                  137899999999999999875

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=1.1e-29  Score=197.51  Aligned_cols=245  Identities=21%  Similarity=0.251  Sum_probs=194.3

Q ss_pred             CCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhc
Q 022303           13 PKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMK   92 (299)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (299)
                      .+.-++..+.+|++|+-....+...+.||.+.|.|+.++..  .+++                ..+|.++++|..  ..+
T Consensus       208 ~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r--viis----------------GSSDsTvrvWDv--~tg  267 (499)
T KOG0281|consen  208 EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER--VIVS----------------GSSDSTVRVWDV--NTG  267 (499)
T ss_pred             hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce--EEEe----------------cCCCceEEEEec--cCC
Confidence            34556667899999999999999999999999999999876  5555                558899999943  222


Q ss_pred             cccceeecCceeeEEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCcee---EEEecCCCceeE-EEEecCCCEEE-
Q 022303           93 HHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKC---VEEYSLPNAASL-VDFDFDESKIV-  167 (299)
Q Consensus        93 ~~~~~l~~g~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~-~~~~~~~~~l~-  167 (299)
                                ..++++-+|.+.|..+.|.+++++|++.|.++.+||+.....   .+.+.+|...+. +.|  +.++++ 
T Consensus       268 ----------e~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVs  335 (499)
T KOG0281|consen  268 ----------EPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVS  335 (499)
T ss_pred             ----------chhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEE
Confidence                      234555799999999999999999999999999999986542   234556765555 776  456888 


Q ss_pred             EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeE
Q 022303          168 GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLI  247 (299)
Q Consensus       168 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l  247 (299)
                      ++.|.+|++|++.+...+...+ ++...+.|..+.+..+++|+.|.+|++||+..|.+++.+++|..-|.++.|+. +.+
T Consensus       336 ASgDRTikvW~~st~efvRtl~-gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~-krI  413 (499)
T KOG0281|consen  336 ASGDRTIKVWSTSTCEFVRTLN-GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-KRI  413 (499)
T ss_pred             ecCCceEEEEeccceeeehhhh-cccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC-cee
Confidence            9999999999999886443322 23333568889999999999999999999999999999999999999999954 579


Q ss_pred             EEEeCCCcEEEEeCCCCc---------eEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          248 ISGSSLGSIAISGLSSDQ---------RVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       248 ~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ++|+.||+|++||+.++.         |+.++..|.+  .|..+.|  |...+++++
T Consensus       414 VSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsg--RVFrLQF--D~fqIvsss  466 (499)
T KOG0281|consen  414 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSG--RVFRLQF--DEFQIISSS  466 (499)
T ss_pred             eeccccceEEEEecccccCCcccccchHHHhhhhccc--eeEEEee--cceEEEecc
Confidence            999999999999998754         3455555666  7888888  444454443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=9.7e-29  Score=199.43  Aligned_cols=236  Identities=15%  Similarity=0.198  Sum_probs=192.0

Q ss_pred             HHhhccCccchhhHHHhhh-hHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccc
Q 022303           34 MIFSSLGFFDLVRCSAVCK-SWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHS  112 (299)
Q Consensus        34 ~i~~~~~h~~~v~~~~~~~-~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~  112 (299)
                      .+..+-+|+..|+++.|.| .+.++++                ...|+.+++|..           ......+++|.+|.
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS----------------~gmD~~vklW~v-----------y~~~~~lrtf~gH~  258 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLS----------------GGMDGLVKLWNV-----------YDDRRCLRTFKGHR  258 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEe----------------cCCCceEEEEEE-----------ecCcceehhhhcch
Confidence            6778889999999999999 7777776                346777788832           33344468889999


Q ss_pred             cCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCC-CEEE-EEcCCeEEEEecCCce--eee
Q 022303          113 VGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE-SKIV-GLIGTRICIWRRNGLR--SVF  186 (299)
Q Consensus       113 ~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~-~~~d~~i~v~d~~~~~--~~~  186 (299)
                      .+|.++.| .++ .++|++.|+.|++||+++|+++..+.......++.|+|++ +.++ |..|+.|+.||+++++  ..+
T Consensus       259 k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY  338 (503)
T KOG0282|consen  259 KPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY  338 (503)
T ss_pred             hhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH
Confidence            99999999 455 9999999999999999999999999988888889999998 4444 9999999999999986  334


Q ss_pred             eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeee--------------------------------------
Q 022303          187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI--------------------------------------  228 (299)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--------------------------------------  228 (299)
                      ..+.+.+.. +.|-+.+.++++.++|+.++||+.+....+..                                      
T Consensus       339 d~hLg~i~~-i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~  417 (503)
T KOG0282|consen  339 DRHLGAILD-ITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPP  417 (503)
T ss_pred             Hhhhhheee-eEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccc
Confidence            455555553 46778888999999999999999775322111                                      


Q ss_pred             --------cccc--CCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCC-CeEEeeec
Q 022303          229 --------IRMH--CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL-HMLFFLCF  296 (299)
Q Consensus       229 --------~~~~--~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~s~s~  296 (299)
                              +.+|  .+.-..+.|+|| .+|++|+.||.+.+||.++-+.+..++.|..  ++..+.|+|.. ..+|+|++
T Consensus       418 ~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Skvat~~w  495 (503)
T KOG0282|consen  418 FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSKVATCGW  495 (503)
T ss_pred             cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcceeEeccc
Confidence                    1122  234566899999 9999999999999999999999999999977  99999999964 57888888


Q ss_pred             ccC
Q 022303          297 LPL  299 (299)
Q Consensus       297 ~~~  299 (299)
                      .|+
T Consensus       496 ~G~  498 (503)
T KOG0282|consen  496 DGL  498 (503)
T ss_pred             Cce
Confidence            763

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.96  E-value=1.6e-28  Score=182.94  Aligned_cols=232  Identities=13%  Similarity=0.158  Sum_probs=192.2

Q ss_pred             chhccCcHHHHH--HHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceee
Q 022303           22 ATIESLNGDIIC--MIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALE   99 (299)
Q Consensus        22 ~~~~~~~~~~~~--~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~   99 (299)
                      +.+++.+..+..  .+.+|.+|..-|.++.|--+++.+.+                ..+|+++|+|  +++.-...+.+ 
T Consensus        61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyT----------------gseDgt~kIW--dlR~~~~qR~~-  121 (311)
T KOG0315|consen   61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYT----------------GSEDGTVKIW--DLRSLSCQRNY-  121 (311)
T ss_pred             CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEe----------------cCCCceEEEE--eccCcccchhc-
Confidence            556666655443  68899999999999999999999998                5689999999  55554444444 


Q ss_pred             cCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecC--CCceeEEEEecCCCEEE-EEcCCeE
Q 022303          100 EGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSL--PNAASLVDFDFDESKIV-GLIGTRI  174 (299)
Q Consensus       100 ~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~-~~~d~~i  174 (299)
                                .|.++|+++.. |+. .|++|..+|.|++||+.+..+...+-.  ...+.++.+.|||..++ +...|+.
T Consensus       122 ----------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~c  191 (311)
T KOG0315|consen  122 ----------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNC  191 (311)
T ss_pred             ----------cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccE
Confidence                      68899999988 555 999999999999999998877665543  23455599999999999 8888999


Q ss_pred             EEEecCCce--------eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC-
Q 022303          175 CIWRRNGLR--------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-  244 (299)
Q Consensus       175 ~v~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~-  244 (299)
                      ++|++-+.+        ..++.|.++...+ .++|++++|++++.|.+++||+.++. +....+.+|...+..++|+.| 
T Consensus       192 yvW~l~~~~~~s~l~P~~k~~ah~~~il~C-~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg  270 (311)
T KOG0315|consen  192 YVWRLLNHQTASELEPVHKFQAHNGHILRC-LLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADG  270 (311)
T ss_pred             EEEEccCCCccccceEhhheecccceEEEE-EECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCc
Confidence            999987643        3456677776654 78999999999999999999999987 555677799999999999999 


Q ss_pred             CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEcc
Q 022303          245 QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYP  285 (299)
Q Consensus       245 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  285 (299)
                      ++|++|+.|+.+++||++.++.++.+.+|..  +..|++..
T Consensus       271 ~YlvTassd~~~rlW~~~~~k~v~qy~gh~K--~~vc~~ln  309 (311)
T KOG0315|consen  271 EYLVTASSDHTARLWDLSAGKEVRQYQGHHK--AAVCVALN  309 (311)
T ss_pred             cEEEecCCCCceeecccccCceeeecCCccc--ccEEEEee
Confidence            9999999999999999999999999999998  67776653

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=6.9e-29  Score=193.64  Aligned_cols=226  Identities=19%  Similarity=0.225  Sum_probs=194.6

Q ss_pred             ccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeE
Q 022303           38 SLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQ  117 (299)
Q Consensus        38 ~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~  117 (299)
                      ..+|.+.|+|+++.|....+++                ...|.++++|  +++.+.....+          .||...|..
T Consensus       147 i~gHlgWVr~vavdP~n~wf~t----------------gs~DrtikIw--Dlatg~Lkltl----------tGhi~~vr~  198 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPGNEWFAT----------------GSADRTIKIW--DLATGQLKLTL----------TGHIETVRG  198 (460)
T ss_pred             hhhccceEEEEeeCCCceeEEe----------------cCCCceeEEE--EcccCeEEEee----------cchhheeee
Confidence            4479999999999999888887                5688999999  55555554444          899999999


Q ss_pred             EEecCC--EEEEEeCCCcEEEEecCCceeEEEecCCC-ceeEEEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCC
Q 022303          118 CRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREG  191 (299)
Q Consensus       118 ~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~  191 (299)
                      +++++.  |+++++.|+.|+.||++..+.++.+.+|- .+.+++.+|.-+.|+ ++.|.++++||+++..  ..+.+|.+
T Consensus       199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~  278 (460)
T KOG0285|consen  199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN  278 (460)
T ss_pred             eeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC
Confidence            999655  99999999999999999999999999884 556699999999999 9999999999999875  55677887


Q ss_pred             ccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEe
Q 022303          192 TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATL  270 (299)
Q Consensus       192 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~  270 (299)
                      .+..+ .+.+.++.+++|+.|++|++||++.++....+..|...+.+++.+|. ..+|+++.|. |+-|++..|+.++.+
T Consensus       279 ~V~~V-~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nl  356 (460)
T KOG0285|consen  279 PVASV-MCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNL  356 (460)
T ss_pred             cceeE-EeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcc
Confidence            77654 56677888999999999999999999999999999999999999999 7788888766 999999999999999


Q ss_pred             eccCCCCcEEEEEccCCCCeEEeeec
Q 022303          271 RSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       271 ~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      .+|..  -|++++...||- +++|+-
T Consensus       357 sgh~~--iintl~~nsD~v-~~~G~d  379 (460)
T KOG0285|consen  357 SGHNA--IINTLSVNSDGV-LVSGGD  379 (460)
T ss_pred             ccccc--eeeeeeeccCce-EEEcCC
Confidence            99988  899999988864 555543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.6e-28  Score=210.26  Aligned_cols=262  Identities=13%  Similarity=0.152  Sum_probs=195.3

Q ss_pred             Hhhcc-CccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhc-----------------CCCCC---CCchhhhhhhh
Q 022303           35 IFSSL-GFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLH-----------------GFSNT---SGSSMRLHLEE   88 (299)
Q Consensus        35 i~~~~-~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~-----------------~~~~~---~d~~~~~~~~~   88 (299)
                      .+... .|.+.|.|++|+++|++||+     .+++|+..-....                 ..+.+   +....+--...
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            33445 79999999999999999999     4668877442211                 00000   00000000000


Q ss_pred             hhh---cccc----ceeecCceeeEEeeccccCeeEEEec-CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEe
Q 022303           89 LAM---KHHR----FALEEGRIDIDQWKAHSVGVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD  160 (299)
Q Consensus        89 ~~~---~~~~----~~l~~g~~~~~~~~~h~~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  160 (299)
                      .+.   ++..    ..+.-...++..|+||.+.|..+.|+ +++|++++.|.+|++|++...+|+..|.+.+.+++++|+
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFn  418 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFN  418 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEec
Confidence            000   0000    00000112267779999999999995 559999999999999999999999999999999999999


Q ss_pred             c-CCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc-------
Q 022303          161 F-DESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-------  231 (299)
Q Consensus       161 ~-~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------  231 (299)
                      | |.++++ |+-|+.+++|++...+.+...-.......+|+.|+|+..+.|+.+|.+++|+....+....+..       
T Consensus       419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk  498 (712)
T KOG0283|consen  419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK  498 (712)
T ss_pred             ccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence            9 567777 9999999999999887554433334445679999999999999999999999987666554431       


Q ss_pred             -cCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          232 -HCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       232 -~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                       ....|+.++|.|.  ..+++.+.|..|+|+|.++.+++..+++......-....|+.||++++++|-
T Consensus       499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se  566 (712)
T KOG0283|consen  499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE  566 (712)
T ss_pred             ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec
Confidence             1237999999987  5688888999999999999999999998876556677899999999999984

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.2e-28  Score=192.42  Aligned_cols=230  Identities=16%  Similarity=0.183  Sum_probs=187.2

Q ss_pred             hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCee
Q 022303           37 SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVD  116 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~  116 (299)
                      .+.+|...|+.+.+.|++..+++                ..+|.++++|..  .....          .+.++||++.|.
T Consensus       103 ~l~g~r~~vt~v~~hp~~~~v~~----------------as~d~tikv~D~--~tg~~----------e~~LrGHt~sv~  154 (406)
T KOG0295|consen  103 KLAGHRSSVTRVIFHPSEALVVS----------------ASEDATIKVFDT--ETGEL----------ERSLRGHTDSVF  154 (406)
T ss_pred             hhhccccceeeeeeccCceEEEE----------------ecCCceEEEEEc--cchhh----------hhhhhcccccee
Confidence            33456666666666666666554                226778888843  33333          344599999999


Q ss_pred             EEEec-CC-EEEEEeCCCcEEEEecCC-ceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce--eeeecc
Q 022303          117 QCRMK-RG-LILTGVGDKVMRLWSLEG-YKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSR  189 (299)
Q Consensus       117 ~~~~~-~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~  189 (299)
                      .+.|. .+ +|++++.|-.+++||.++ .+++....+|+..++ +.|-|.+.+++ ++.|.+|+.|++.++-  ..+..|
T Consensus       155 di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h  234 (406)
T KOG0295|consen  155 DISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH  234 (406)
T ss_pred             EEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc
Confidence            99993 44 999999999999999986 567777778877776 99999999999 9999999999999985  344455


Q ss_pred             CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC----------------CeEEEEeCC
Q 022303          190 EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED----------------QLIISGSSL  253 (299)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~----------------~~l~~~~~d  253 (299)
                      ..- ..++.++.++..+++++.|.++++|-+.++++...++.|..+|-+++|-|.                +++++++.|
T Consensus       235 ~ew-vr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD  313 (406)
T KOG0295|consen  235 SEW-VRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD  313 (406)
T ss_pred             hHh-EEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence            442 235577777777999999999999999999999999999999999999651                389999999


Q ss_pred             CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          254 GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       254 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ++|++||+.++.++.++.+|.+  .|.+++|+|.|+||+++.-.
T Consensus       314 ktIk~wdv~tg~cL~tL~ghdn--wVr~~af~p~Gkyi~ScaDD  355 (406)
T KOG0295|consen  314 KTIKIWDVSTGMCLFTLVGHDN--WVRGVAFSPGGKYILSCADD  355 (406)
T ss_pred             ceEEEEeccCCeEEEEEecccc--eeeeeEEcCCCeEEEEEecC
Confidence            9999999999999999999999  99999999999999998754

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=2.6e-27  Score=176.67  Aligned_cols=224  Identities=17%  Similarity=0.196  Sum_probs=182.7

Q ss_pred             CCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhh
Q 022303           12 PPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAM   91 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~   91 (299)
                      --|.++...+-+-++|+.-++.++.++ .|.-.|.+++|+.+.++|++                ...+.-+|++..    
T Consensus        71 a~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~llt----------------gg~ekllrvfdl----  129 (334)
T KOG0278|consen   71 ATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLT----------------GGQEKLLRVFDL----  129 (334)
T ss_pred             hhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhc----------------cchHHHhhhhhc----
Confidence            345566678889999999999988776 78899999999999999998                112233355522    


Q ss_pred             ccccceeecCceeeEEeeccccCeeEEEe--cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEE
Q 022303           92 KHHRFALEEGRIDIDQWKAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGL  169 (299)
Q Consensus        92 ~~~~~~l~~g~~~~~~~~~h~~~i~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  169 (299)
                             .+...+...+.+|++.|..+.|  .+..+++.+.|++|++||..+++.++++..+.++.++.++++|++|...
T Consensus       130 -------n~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia  202 (334)
T KOG0278|consen  130 -------NRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA  202 (334)
T ss_pred             -------cCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe
Confidence                   2222334455799999999988  4558888899999999999999999999999999999999999999988


Q ss_pred             cCCeEEEEecCCceee--eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeec-cccCCceeEEEeCCC-C
Q 022303          170 IGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII-RMHCAPVTSLSLSED-Q  245 (299)
Q Consensus       170 ~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~-~  245 (299)
                      ..+.|.+||..+-..+  +..+.+ +. ..++.|....+++|+.|..++.||..+++.+..+ ++|.++|.|+.|+|+ .
T Consensus       203 ~gssV~Fwdaksf~~lKs~k~P~n-V~-SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE  280 (334)
T KOG0278|consen  203 YGSSVKFWDAKSFGLLKSYKMPCN-VE-SASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE  280 (334)
T ss_pred             cCceeEEeccccccceeeccCccc-cc-cccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc
Confidence            8899999999876422  222222 12 2367888888999999999999999999998886 799999999999999 9


Q ss_pred             eEEEEeCCCcEEEEeCCCCc
Q 022303          246 LIISGSSLGSIAISGLSSDQ  265 (299)
Q Consensus       246 ~l~~~~~dg~i~iwd~~~~~  265 (299)
                      ..++|++||+|++|...-++
T Consensus       281 ~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  281 LYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             eeeccCCCceEEEEEecCCC
Confidence            99999999999999986554

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=1.6e-26  Score=195.80  Aligned_cols=187  Identities=20%  Similarity=0.280  Sum_probs=164.8

Q ss_pred             eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce-
Q 022303          109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR-  183 (299)
Q Consensus       109 ~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~-  183 (299)
                      ++|...++++++ ||+ +++||+.||.|+|||...+-|..+|..|...+. +.|+..++.++ ++-||+|+.||+...+ 
T Consensus       347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN  426 (893)
T KOG0291|consen  347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN  426 (893)
T ss_pred             cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence            799999999999 777 999999999999999999999999998877666 99999999999 9999999999998764 


Q ss_pred             -eeeeccCCccceeeeeccCCCeEEEecCCCc-EEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEe
Q 022303          184 -SVFPSREGTFMKGLCMRYFDPEAVVGCEDGT-ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG  260 (299)
Q Consensus       184 -~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd  260 (299)
                       ..+..+......++++.|.+..+++|+.|.. |.+|++++|+.+..+.+|.+||.+++|+|+ ..|+++|.|.+|++||
T Consensus       427 fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~  506 (893)
T KOG0291|consen  427 FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD  506 (893)
T ss_pred             eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence             5566665555556788888998888888765 999999999999999999999999999999 9999999999999999


Q ss_pred             CCCC-ceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          261 LSSD-QRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       261 ~~~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      +-.. ..+.++...+   .+..++|+|+|+.|+++++-+
T Consensus       507 if~s~~~vEtl~i~s---dvl~vsfrPdG~elaVaTldg  542 (893)
T KOG0291|consen  507 IFSSSGTVETLEIRS---DVLAVSFRPDGKELAVATLDG  542 (893)
T ss_pred             eeccCceeeeEeecc---ceeEEEEcCCCCeEEEEEecc
Confidence            8653 3566666555   699999999999999998753

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.3e-27  Score=179.19  Aligned_cols=233  Identities=16%  Similarity=0.142  Sum_probs=192.6

Q ss_pred             hhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCe
Q 022303           36 FSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGV  115 (299)
Q Consensus        36 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i  115 (299)
                      -++.+|...|..++++-+|..+++                ...|.+.++|..  ........+        .+++|.+.|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~las----------------gs~dktv~v~n~--e~~r~~~~~--------~~~gh~~sv   67 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLAS----------------GSFDKTVSVWNL--ERDRFRKEL--------VYRGHTDSV   67 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeee----------------cccCCceEEEEe--cchhhhhhh--------cccCCCcch
Confidence            466788899999999999999997                345666667622  222111111        237999999


Q ss_pred             eEEEe-c--CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCC
Q 022303          116 DQCRM-K--RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREG  191 (299)
Q Consensus       116 ~~~~~-~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~  191 (299)
                      -.+.| +  ++++++++.|.+|++||+..++++..+......+.+.|+|++.+++ +..|..|.+.|.++.+........
T Consensus        68 dql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~  147 (313)
T KOG1407|consen   68 DQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK  147 (313)
T ss_pred             hhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc
Confidence            99888 3  3399999999999999999999999999888889999999999998 999999999999877533222222


Q ss_pred             ccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEe
Q 022303          192 TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATL  270 (299)
Q Consensus       192 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~  270 (299)
                      ....-++|+..+..++.....|+|.|....+-++++.++.|.....||.|+|+ +++|+|+.|..+.+||+..--|++.+
T Consensus       148 ~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i  227 (313)
T KOG1407|consen  148 FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI  227 (313)
T ss_pred             ceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence            22223578877777776777899999999999999999999999999999999 99999999999999999999999999


Q ss_pred             eccCCCCcEEEEEccCCCCeEEeeec
Q 022303          271 RSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       271 ~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ..+.-  +|+.++||.||++||+||-
T Consensus       228 sRldw--pVRTlSFS~dg~~lASaSE  251 (313)
T KOG1407|consen  228 SRLDW--PVRTLSFSHDGRMLASASE  251 (313)
T ss_pred             ccccC--ceEEEEeccCcceeeccCc
Confidence            99888  9999999999999999985

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.95  E-value=3.6e-27  Score=192.30  Aligned_cols=261  Identities=15%  Similarity=0.186  Sum_probs=197.2

Q ss_pred             CCCCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhh
Q 022303           10 SPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEEL   89 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~   89 (299)
                      ++|=|.+.++-+.++..+.....+=-.++..|...|+|++++|+|.++|+                ...|+.+-+|.-  
T Consensus       158 sRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat----------------~gsDgki~iyDG--  219 (603)
T KOG0318|consen  158 SRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFAT----------------AGSDGKIYIYDG--  219 (603)
T ss_pred             CCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEE----------------ecCCccEEEEcC--
Confidence            66777888888888888887777666677899999999999999999998                335554444421  


Q ss_pred             hhccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEec------------------
Q 022303           90 AMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS------------------  149 (299)
Q Consensus        90 ~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~------------------  149 (299)
                      ..++....|..       -.+|++.|.++.| ||. .++|++.|.+++|||+.+.+++.++.                  
T Consensus       220 ktge~vg~l~~-------~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~  292 (603)
T KOG0318|consen  220 KTGEKVGELED-------SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDH  292 (603)
T ss_pred             CCccEEEEecC-------CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCe
Confidence            11111111111       1489999999999 677 99999999999999998876666552                  


Q ss_pred             -------------------------CCCce-eEEEEecCCCEEE-EEcCCeEEEEecCCce-------------------
Q 022303          150 -------------------------LPNAA-SLVDFDFDESKIV-GLIGTRICIWRRNGLR-------------------  183 (299)
Q Consensus       150 -------------------------~~~~~-~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~-------------------  183 (299)
                                               +|... .++..++++++|+ ++.||.|.-|+..++.                   
T Consensus       293 lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~  372 (603)
T KOG0318|consen  293 LITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS  372 (603)
T ss_pred             EEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeec
Confidence                                     25444 4499999999999 9999999999986410                   


Q ss_pred             --------------------------------------------------------eeeecc-------CCccceeeeec
Q 022303          184 --------------------------------------------------------SVFPSR-------EGTFMKGLCMR  200 (299)
Q Consensus       184 --------------------------------------------------------~~~~~~-------~~~~~~~~~~~  200 (299)
                                                                              .++..+       .+-...+++++
T Consensus       373 ~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~  452 (603)
T KOG0318|consen  373 ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS  452 (603)
T ss_pred             CCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEc
Confidence                                                                    000000       00111245677


Q ss_pred             cCCCeEEEecCCCcEEEEEcCCcceee--eccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCce-EEEeeccCCC
Q 022303          201 YFDPEAVVGCEDGTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQR-VATLRSTDCT  276 (299)
Q Consensus       201 ~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~  276 (299)
                      +++..++.|++|+++++|.+.-.+...  ....|..+|++++++|| .+||+|...+.+.+||+.+.+. ...+.-|.. 
T Consensus       453 ~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHta-  531 (603)
T KOG0318|consen  453 PDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTA-  531 (603)
T ss_pred             CCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeee-
Confidence            888888999999999999998655332  34489999999999999 9999999999999999998775 334445666 


Q ss_pred             CcEEEEEccCCCCeEEeeecc
Q 022303          277 GHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       277 ~~i~~~~~s~~g~~l~s~s~~  297 (299)
                       .|.+++|+|+.+++|+||+-
T Consensus       532 -kI~~~aWsP~n~~vATGSlD  551 (603)
T KOG0318|consen  532 -KINCVAWSPNNKLVATGSLD  551 (603)
T ss_pred             -eEEEEEeCCCceEEEecccc
Confidence             89999999999999999973

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.95  E-value=1.3e-28  Score=194.89  Aligned_cols=214  Identities=14%  Similarity=0.161  Sum_probs=175.9

Q ss_pred             chhhhhhhhhhhccccceeecCcee-------------eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCcee
Q 022303           80 SSMRLHLEELAMKHHRFALEEGRID-------------IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKC  144 (299)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~g~~~-------------~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~  144 (299)
                      ...|.-+..+++.|+++.|..|...             -..+++|..+|.++.| +++ +++||+.+|.|++|+..-. .
T Consensus        93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-n  171 (464)
T KOG0284|consen   93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-N  171 (464)
T ss_pred             cccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-h
Confidence            4445555577888998777665543             2233789999999999 555 9999999999999997643 3


Q ss_pred             EEEec-CC-CceeEEEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEE
Q 022303          145 VEEYS-LP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFD  219 (299)
Q Consensus       145 ~~~~~-~~-~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd  219 (299)
                      ++.++ .| +.+..++|+|+...++ ++.||+|+|||.....  .++.+|.-.+. .++|+|....+++|+.|..|++||
T Consensus       172 Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk-svdWHP~kgLiasgskDnlVKlWD  250 (464)
T KOG0284|consen  172 VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK-SVDWHPTKGLIASGSKDNLVKLWD  250 (464)
T ss_pred             hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc-eeccCCccceeEEccCCceeEeec
Confidence            44444 44 3444599999988888 9999999999998654  45555544433 569999999999999999999999


Q ss_pred             cCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCC-CCeEEeeecc
Q 022303          220 MYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQF-LHMLFFLCFL  297 (299)
Q Consensus       220 ~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~s~s~~  297 (299)
                      .++++++.++..|+..|..+.|+|+ ++|+++|.|..++++|+++.+.+.++++|..  .|+++.|+|- ..+|.+|++-
T Consensus       251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~lftsgg~D  328 (464)
T KOG0284|consen  251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNESLFTSGGSD  328 (464)
T ss_pred             CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh--hheeeccccccccceeeccCC
Confidence            9999999999999999999999999 9999999999999999999999999999999  9999999994 4566666654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=8.5e-27  Score=200.99  Aligned_cols=229  Identities=20%  Similarity=0.253  Sum_probs=186.2

Q ss_pred             cchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEEe-
Q 022303           42 FDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-  120 (299)
Q Consensus        42 ~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-  120 (299)
                      ...|.|+.|+++++.+++                ...+..+++|..  .....        ...+.+.+|...|.++.| 
T Consensus       159 ~~sv~~~~fs~~g~~l~~----------------~~~~~~i~~~~~--~~~~~--------~~~~~l~~h~~~v~~~~fs  212 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAA----------------ASSDGLIRIWKL--EGIKS--------NLLRELSGHTRGVSDVAFS  212 (456)
T ss_pred             cCceEEEEEcCCCCeEEE----------------ccCCCcEEEeec--ccccc--------hhhccccccccceeeeEEC
Confidence            667888899999988876                224555566632  11111        123344799999999999 


Q ss_pred             cCC-EEEEEeCCCcEEEEec-CCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCccc
Q 022303          121 KRG-LILTGVGDKVMRLWSL-EGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFM  194 (299)
Q Consensus       121 ~~~-~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~  194 (299)
                      +++ ++++++.|++|++||+ ..+.+++++.+|...+. ++|+|+++.++ |+.|++|++||+++++  ..+..|.+.+.
T Consensus       213 ~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is  292 (456)
T KOG0266|consen  213 PDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS  292 (456)
T ss_pred             CCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence            676 9999999999999999 56689999998876555 99999998888 9999999999999864  56677777655


Q ss_pred             eeeeeccCCCeEEEecCCCcEEEEEcCCcc--eeeeccccCC--ceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEE
Q 022303          195 KGLCMRYFDPEAVVGCEDGTARVFDMYSRK--CSQIIRMHCA--PVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVAT  269 (299)
Q Consensus       195 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~--~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~  269 (299)
                       .+++.+++..+++++.|+.|++||+.++.  ++..+..+..  ++++++|+|+ .++++++.|+.+++||++.++++..
T Consensus       293 -~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~  371 (456)
T KOG0266|consen  293 -GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT  371 (456)
T ss_pred             -EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence             56899999999999999999999999998  4566665544  4999999999 9999999999999999999999999


Q ss_pred             eeccCCC-CcEEEEEccCCCCeEEeeecc
Q 022303          270 LRSTDCT-GHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       270 ~~~~~~~-~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +.+|... ..+.+...++.++++++|+..
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d  400 (456)
T KOG0266|consen  372 YTGHSNLVRCIFSPTLSTGGKLIYSGSED  400 (456)
T ss_pred             ecccCCcceeEecccccCCCCeEEEEeCC
Confidence            9988873 245566678899999999865

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.4e-27  Score=196.11  Aligned_cols=246  Identities=17%  Similarity=0.197  Sum_probs=202.3

Q ss_pred             CcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceee
Q 022303           20 PRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALE   99 (299)
Q Consensus        20 ~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~   99 (299)
                      +.-.+.+|+.++...+.++.--..+|++++|-..-+.+++                ..+|..+|+|.            .
T Consensus        33 ynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~----------------GsDD~~IrVfn------------y   84 (794)
T KOG0276|consen   33 YNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVT----------------GSDDMQIRVFN------------Y   84 (794)
T ss_pred             ecCeeEEEecccceeeeeeeecccchhhheeeeccceEEE----------------ecCCceEEEEe------------c
Confidence            4667889999998888888777788999888777777765                44777778772            2


Q ss_pred             cCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCC-ceeEEEecCCCc-eeEEEEecCC-CEEE-EEcCCe
Q 022303          100 EGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG-YKCVEEYSLPNA-ASLVDFDFDE-SKIV-GLIGTR  173 (299)
Q Consensus       100 ~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~-~~~~~~~~~~-~~l~-~~~d~~  173 (299)
                      .....+++|.+|.+.|.+++. |.. +++|+|.|-+|++||.+. ..+.++|++|+. +..++|+|.. +.++ ++-|++
T Consensus        85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT  164 (794)
T KOG0276|consen   85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT  164 (794)
T ss_pred             ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence            233447888999999999999 544 999999999999999985 468889999865 4459999954 5677 999999


Q ss_pred             EEEEecCCce--eeeeccCCccceeeeeccCC--CeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEE
Q 022303          174 ICIWRRNGLR--SVFPSREGTFMKGLCMRYFD--PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLII  248 (299)
Q Consensus       174 i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~  248 (299)
                      |+||.+..+.  ..++.|+..+. ++++-+.+  |++++|++|..+++||.++..+++++.+|...|..+.|+|. ..++
T Consensus       165 VKVWslgs~~~nfTl~gHekGVN-~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii  243 (794)
T KOG0276|consen  165 VKVWSLGSPHPNFTLEGHEKGVN-CVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIII  243 (794)
T ss_pred             EEEEEcCCCCCceeeeccccCcc-eEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEE
Confidence            9999998775  56667776655 33444433  57999999999999999999999999999999999999999 9999


Q ss_pred             EEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          249 SGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       249 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +|++||+++||...+.++..++.-.-+  .+++++-.+.+..++.|.-
T Consensus       244 sgsEDGTvriWhs~Ty~lE~tLn~gle--RvW~I~~~k~~~~i~vG~D  289 (794)
T KOG0276|consen  244 SGSEDGTVRIWNSKTYKLEKTLNYGLE--RVWCIAAHKGDGKIAVGFD  289 (794)
T ss_pred             EecCCccEEEecCcceehhhhhhcCCc--eEEEEeecCCCCeEEEecc
Confidence            999999999999998888777776666  8999988887777777653

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=2e-26  Score=198.74  Aligned_cols=271  Identities=20%  Similarity=0.254  Sum_probs=205.1

Q ss_pred             CCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhc-CCCCC-------CC----chhh
Q 022303           16 RSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLH-GFSNT-------SG----SSMR   83 (299)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~-~~~~~-------~d----~~~~   83 (299)
                      .....++.+..+|.|....++.+++.++.+.+.++|+.|+.++.....|...+.... ...+.       ..    ..++
T Consensus       100 ~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  179 (537)
T KOG0274|consen  100 EPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWK  179 (537)
T ss_pred             ccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhh
Confidence            344567889999999999999999999999999999999999986665554333322 11000       00    0011


Q ss_pred             hh-----------------------------hhhhhhccccceeecCce-------------eeEE-eeccccCeeEEEe
Q 022303           84 LH-----------------------------LEELAMKHHRFALEEGRI-------------DIDQ-WKAHSVGVDQCRM  120 (299)
Q Consensus        84 ~~-----------------------------~~~~~~~~~~~~l~~g~~-------------~~~~-~~~h~~~i~~~~~  120 (299)
                      .+                             +.+..+.  ...+..+..             .+.. +.||.+.|+++++
T Consensus       180 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~  257 (537)
T KOG0274|consen  180 SFYRRRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAF  257 (537)
T ss_pred             hhhhhhhhccccccccccccceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEE
Confidence            00                             0000111  011111111             1344 7899999999999


Q ss_pred             c--CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCcee--eeeccCCccc
Q 022303          121 K--RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRS--VFPSREGTFM  194 (299)
Q Consensus       121 ~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~--~~~~~~~~~~  194 (299)
                      +  +++|++|+.|.++++||+.+|++...+.+|...+. +..  .+..++ |+.|.+|++|++.++..  .+..|   ..
T Consensus       258 ~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h---~~  332 (537)
T KOG0274|consen  258 PSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGH---TG  332 (537)
T ss_pred             ecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEeccc---cc
Confidence            7  55999999999999999999999999998876665 333  445556 89999999999998753  33334   34


Q ss_pred             eeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCC-ceEEEeecc
Q 022303          195 KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSD-QRVATLRST  273 (299)
Q Consensus       195 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~  273 (299)
                      .+.++..+++.+++|+.|+.|++||+.+++++..+.+|...|.++.+.+...+++|+.|++|++||+++. +++.++.+|
T Consensus       333 ~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h  412 (537)
T KOG0274|consen  333 PVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGH  412 (537)
T ss_pred             cEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCC
Confidence            4667777899999999999999999999999999999999999998877578999999999999999999 999999999


Q ss_pred             CCCCcEEEEEccCCCCeEEeeecc
Q 022303          274 DCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       274 ~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ..  -+..+.+  .+++|++++.-
T Consensus       413 ~~--~v~~l~~--~~~~Lvs~~aD  432 (537)
T KOG0274|consen  413 TS--LVSSLLL--RDNFLVSSSAD  432 (537)
T ss_pred             cc--ccccccc--ccceeEecccc
Confidence            87  6765555  67888888754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.4e-27  Score=176.66  Aligned_cols=230  Identities=17%  Similarity=0.132  Sum_probs=190.9

Q ss_pred             cCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEE
Q 022303           39 LGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQC  118 (299)
Q Consensus        39 ~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~  118 (299)
                      -.|++.|++++|+.+|++.++                ..+|.++|+|..      .      .+..+++|.+|...|..+
T Consensus        14 ~~~qgaV~avryN~dGnY~lt----------------cGsdrtvrLWNp------~------rg~liktYsghG~EVlD~   65 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNVDGNYCLT----------------CGSDRTVRLWNP------L------RGALIKTYSGHGHEVLDA   65 (307)
T ss_pred             cccccceEEEEEccCCCEEEE----------------cCCCceEEeecc------c------ccceeeeecCCCceeeec
Confidence            368999999999999999987                347788899932      2      233478999999999998


Q ss_pred             Ee-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce-eeeeccCCcc
Q 022303          119 RM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR-SVFPSREGTF  193 (299)
Q Consensus       119 ~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~-~~~~~~~~~~  193 (299)
                      +. .++ .+++|+.|..+.+||+++|+..+.+++|...+. +.|+.+...++ ++.|.++++||.+... ...+......
T Consensus        66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~  145 (307)
T KOG0316|consen   66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK  145 (307)
T ss_pred             cccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence            77 455 999999999999999999999999999987766 99999999999 9999999999998753 2222222222


Q ss_pred             ceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeec
Q 022303          194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRS  272 (299)
Q Consensus       194 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~  272 (299)
                      ..+..+.-.+..+++|+.||+++.||++.|.....+-  ..+|+++.|+++ +..+.++-|++|++.|-.+|++++.+++
T Consensus       146 D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG  223 (307)
T KOG0316|consen  146 DGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG  223 (307)
T ss_pred             CceeEEEecccEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc
Confidence            3345666677889999999999999999998876653  568999999999 9999999999999999999999999999


Q ss_pred             cCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          273 TDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       273 ~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      |.+...-..++++.....+++||.-+
T Consensus       224 hkn~eykldc~l~qsdthV~sgSEDG  249 (307)
T KOG0316|consen  224 HKNMEYKLDCCLNQSDTHVFSGSEDG  249 (307)
T ss_pred             cccceeeeeeeecccceeEEeccCCc
Confidence            98754556667888888888888654

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.95  E-value=5.2e-27  Score=188.99  Aligned_cols=245  Identities=14%  Similarity=0.078  Sum_probs=197.4

Q ss_pred             CCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccce
Q 022303           18 SKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFA   97 (299)
Q Consensus        18 ~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (299)
                      +..+--+++|+..- ..+.++--|.++|.+++|++.+++|++                ..-|++.-+|..  ..+     
T Consensus       253 G~~~G~~riw~~~G-~l~~tl~~HkgPI~slKWnk~G~yilS----------------~~vD~ttilwd~--~~g-----  308 (524)
T KOG0273|consen  253 GSEDGEARIWNKDG-NLISTLGQHKGPIFSLKWNKKGTYILS----------------GGVDGTTILWDA--HTG-----  308 (524)
T ss_pred             eecCcEEEEEecCc-hhhhhhhccCCceEEEEEcCCCCEEEe----------------ccCCccEEEEec--cCc-----
Confidence            33555667777554 346677789999999999999999997                335566666622  111     


Q ss_pred             eecCceeeEEeeccccCeeEEEec-CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeE
Q 022303           98 LEEGRIDIDQWKAHSVGVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRI  174 (299)
Q Consensus        98 l~~g~~~~~~~~~h~~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i  174 (299)
                           ...+.+.-|..+-..+.|. +..+++++.|+.|+++.+....++.++.+|...+. +.|+|.+.+|+ ++.|+++
T Consensus       309 -----~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tl  383 (524)
T KOG0273|consen  309 -----TVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTL  383 (524)
T ss_pred             -----eEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCee
Confidence                 1233446777777778894 45999999999999999999999999998876666 99999999999 9999999


Q ss_pred             EEEecCCce--eeeeccCCccceeeeeccCCC---------eEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCC
Q 022303          175 CIWRRNGLR--SVFPSREGTFMKGLCMRYFDP---------EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE  243 (299)
Q Consensus       175 ~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~---------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~  243 (299)
                      ++|......  .-+..|...+.. +.|+|.++         .+++++.|++|++||+..+.++..|..|..+|.+++|+|
T Consensus       384 kiWs~~~~~~~~~l~~Hskei~t-~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~  462 (524)
T KOG0273|consen  384 KIWSMGQSNSVHDLQAHSKEIYT-IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP  462 (524)
T ss_pred             EeeecCCCcchhhhhhhccceee-EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC
Confidence            999976553  344455544332 35555533         389999999999999999999999999999999999999


Q ss_pred             C-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          244 D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       244 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      + +++|+|+.||.|.+|+.++++.++.+.+..   .|..++|+.+|.+|.++-
T Consensus       463 ~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~  512 (524)
T KOG0273|consen  463 NGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACA  512 (524)
T ss_pred             CCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEe
Confidence            9 999999999999999999999999997766   699999999998887653

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.95  E-value=3.3e-26  Score=174.75  Aligned_cols=188  Identities=16%  Similarity=0.208  Sum_probs=158.3

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecC-CceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEec
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLE-GYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRR  179 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~  179 (299)
                      +-.+.+|++.|+.+.| |++ +|+||+.|..|.+|+.. ..+....+.+|+..+- +.|.++++.++ ++.|.+++.||.
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~  119 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA  119 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence            4455799999999999 777 99999999999999954 4555667788987776 99999999999 999999999999


Q ss_pred             CCceeee--eccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCc
Q 022303          180 NGLRSVF--PSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS  255 (299)
Q Consensus       180 ~~~~~~~--~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~  255 (299)
                      ++++.+.  +.|.+.++ +++....++. +.+++.|+++++||+++.+.++.+. ...+++++.|... ..+++|+-|+.
T Consensus       120 ~tG~~~rk~k~h~~~vN-s~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~  197 (338)
T KOG0265|consen  120 ETGKRIRKHKGHTSFVN-SLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDND  197 (338)
T ss_pred             ccceeeehhccccceee-ecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCc
Confidence            9997543  34444333 2222222333 7899999999999999999988884 4667999999987 88999999999


Q ss_pred             EEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          256 IAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       256 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      |++||++.++.+.++.+|.+  +|+.+..+|+|.++.+-++
T Consensus       198 ikvWd~r~~d~~~~lsGh~D--tIt~lsls~~gs~llsnsM  236 (338)
T KOG0265|consen  198 IKVWDLRKNDGLYTLSGHAD--TITGLSLSRYGSFLLSNSM  236 (338)
T ss_pred             eeeeccccCcceEEeecccC--ceeeEEeccCCCccccccc
Confidence            99999999999999999999  9999999999999988775

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.5e-26  Score=167.79  Aligned_cols=188  Identities=18%  Similarity=0.178  Sum_probs=161.5

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecC
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRN  180 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~  180 (299)
                      .+++..|+++|.++.| -++ |.++++.|.+|++|+...+.+++++.+|...+. ++.+.|+..++ ++.|..+.+||++
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence            5667899999999999 344 999999999999999999999999999987776 89999999999 9999999999999


Q ss_pred             Cce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCC--cceeeeccccCCceeEEEeCCCCeEEEEeCCCcE
Q 022303          181 GLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS--RKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSI  256 (299)
Q Consensus       181 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i  256 (299)
                      +++  ..+..|.+.++ .+.++....-+++|+.|.++++||.++  .++++.+....+.|.++.... ..+++|+.||++
T Consensus        90 TGkv~Rr~rgH~aqVN-tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-heIvaGS~DGtv  167 (307)
T KOG0316|consen   90 TGKVDRRFRGHLAQVN-TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-HEIVAGSVDGTV  167 (307)
T ss_pred             cCeeeeecccccceee-EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-cEEEeeccCCcE
Confidence            986  45667777665 346666667799999999999999986  467888887788899998854 468999999999


Q ss_pred             EEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          257 AISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      +.||++.|+...-.-++    +|++++|+++|+.++++++.+
T Consensus       168 RtydiR~G~l~sDy~g~----pit~vs~s~d~nc~La~~l~s  205 (307)
T KOG0316|consen  168 RTYDIRKGTLSSDYFGH----PITSVSFSKDGNCSLASSLDS  205 (307)
T ss_pred             EEEEeecceeehhhcCC----cceeEEecCCCCEEEEeeccc
Confidence            99999999876655544    899999999999999998754

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.5e-25  Score=166.39  Aligned_cols=189  Identities=14%  Similarity=0.190  Sum_probs=160.8

Q ss_pred             eEEeeccccCeeEEEe-cC-C-EEEEEeCCCcEEEEecCC---ceeEEEec-CCCcee-EEEEecCCCEEE-EEcCCeEE
Q 022303          105 IDQWKAHSVGVDQCRM-KR-G-LILTGVGDKVMRLWSLEG---YKCVEEYS-LPNAAS-LVDFDFDESKIV-GLIGTRIC  175 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~-~-~l~s~~~dg~i~iwd~~~---~~~~~~~~-~~~~~~-~~~~~~~~~~l~-~~~d~~i~  175 (299)
                      ++.+++|+++++.++| |. + .|+|++.|+.|++|+...   ..+...+. +|...+ +++|+|.|++|+ ++.|.++.
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~   86 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV   86 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence            5677999999999999 44 3 899999999999999884   34444443 455444 499999999999 99999999


Q ss_pred             EEecCCce----eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCC---cceeeeccccCCceeEEEeCCC-CeE
Q 022303          176 IWRRNGLR----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS---RKCSQIIRMHCAPVTSLSLSED-QLI  247 (299)
Q Consensus       176 v~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~i~~~~~~~~-~~l  247 (299)
                      +|.-....    ..+++|++.+. +++|+.++.+|++++.|+.|-||.+..   .++...++.|.+-|..+.|+|. .+|
T Consensus        87 Iw~k~~~efecv~~lEGHEnEVK-~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL  165 (312)
T KOG0645|consen   87 IWKKEDGEFECVATLEGHENEVK-CVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL  165 (312)
T ss_pred             EeecCCCceeEEeeeecccccee-EEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence            99887553    45677777655 569999999999999999999999874   3567788899999999999998 899


Q ss_pred             EEEeCCCcEEEEeCC---CCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          248 ISGSSLGSIAISGLS---SDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       248 ~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +++++|.+|++|+-.   .-++++++.+|+.  .|.+++|++.|..|++++-
T Consensus       166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~--TVW~~~F~~~G~rl~s~sd  215 (312)
T KOG0645|consen  166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHEN--TVWSLAFDNIGSRLVSCSD  215 (312)
T ss_pred             EEeccCCeEEEEeecCCCCeeEEEEecCccc--eEEEEEecCCCceEEEecC
Confidence            999999999999876   2368999999998  8999999999999999874

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.4e-27  Score=180.73  Aligned_cols=270  Identities=17%  Similarity=0.191  Sum_probs=202.6

Q ss_pred             CCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhc-CCCCCCCchhhhhhh---
Q 022303           17 SSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLH-GFSNTSGSSMRLHLE---   87 (299)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~-~~~~~~d~~~~~~~~---   87 (299)
                      ....+.+-.+|..|.+.|+.+|.+|.+.|+|++|++++.++++     +..+|+....-.. .+..+.++.-..-..   
T Consensus       165 tASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sD  244 (481)
T KOG0300|consen  165 TASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSD  244 (481)
T ss_pred             ecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccc
Confidence            3457888999999999999999999999999999999999988     6779997665544 333332222111100   


Q ss_pred             ------hhhhccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EE
Q 022303           88 ------ELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VD  158 (299)
Q Consensus        88 ------~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~  158 (299)
                            +-.-..++.   +-..++..+++|.+.|.++.| ..+ +++++++|.+..+||+++++.+..+.+|+.... ++
T Consensus       245 e~~~d~d~~~~sD~~---tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcs  321 (481)
T KOG0300|consen  245 EHNRDTDSSEKSDGH---TIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCS  321 (481)
T ss_pred             ccccccccccccCCc---eeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccc
Confidence                  000011111   112236678999999999999 555 999999999999999999999999999988877 88


Q ss_pred             EecCCCEEE-EEcCCeEEEEecCCce---eeeeccCCccceeeeeccC-CCeEEEecCCCcEEEEEcCCc-ceeeecccc
Q 022303          159 FDFDESKIV-GLIGTRICIWRRNGLR---SVFPSREGTFMKGLCMRYF-DPEAVVGCEDGTARVFDMYSR-KCSQIIRMH  232 (299)
Q Consensus       159 ~~~~~~~l~-~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~  232 (299)
                      -+|..++++ ++.|.+.++||++...   .+|++|...+.   ...+. +..+++|++|.+|++||+++. .++.++. .
T Consensus       322 tHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVT---S~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR-t  397 (481)
T KOG0300|consen  322 THPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVT---SVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR-T  397 (481)
T ss_pred             cCCcceEEEEeccCceeEeccchhhcceeeeeccccccee---EEEEecCCceeecCCCceEEEeeeccccCcceeee-c
Confidence            899999988 9999999999999654   45566555443   44444 455999999999999999874 4566664 4


Q ss_pred             CCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEe-----eccCCCCcEEEEEccCCC--CeEEeeec
Q 022303          233 CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATL-----RSTDCTGHIICLMYPQFL--HMLFFLCF  296 (299)
Q Consensus       233 ~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~i~~~~~s~~g--~~l~s~s~  296 (299)
                      ..+++.++++.+ ..++.-..+..|++||++ |..+..+     ++|..  .|+|++|..+-  .-|+++++
T Consensus       398 dS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrR--MV~c~AW~eehp~cnLftcGF  466 (481)
T KOG0300|consen  398 DSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRR--MVTCCAWLEEHPACNLFTCGF  466 (481)
T ss_pred             CCccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccce--eeeeeeccccCcccccccccc
Confidence            678999999988 789999999999999996 5444444     35655  79999997643  34556554

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=1e-26  Score=181.80  Aligned_cols=255  Identities=14%  Similarity=0.147  Sum_probs=187.8

Q ss_pred             CCCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhh
Q 022303           11 PPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELA   90 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~   90 (299)
                      ..+..+.++.++.-.+|+..++..+..+.+|.+.|+|+.|+.++.+||+                ..-++.+++|  ...
T Consensus        75 ~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLAT----------------GdmsG~v~v~--~~s  136 (399)
T KOG0296|consen   75 NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLAT----------------GDMSGKVLVF--KVS  136 (399)
T ss_pred             CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEe----------------cCCCccEEEE--Ecc
Confidence            4455567788899999999999988899999999999999999999999                2223333444  222


Q ss_pred             hccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE
Q 022303           91 MKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV  167 (299)
Q Consensus        91 ~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~  167 (299)
                      .+.....+          ..--+.|.=+.| |-. .|+.|+.||.+-+|.+.++...+.+.+|+.... -.|.|+|+.++
T Consensus       137 tg~~~~~~----------~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~  206 (399)
T KOG0296|consen  137 TGGEQWKL----------DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRIL  206 (399)
T ss_pred             cCceEEEe----------ecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEE
Confidence            22222111          122223333445 444 888888999999998888777778888766555 78888888888


Q ss_pred             -EEcCCeEEEEecCCceeeeecc-----------------------CC--------ccce-eeeecc-------------
Q 022303          168 -GLIGTRICIWRRNGLRSVFPSR-----------------------EG--------TFMK-GLCMRY-------------  201 (299)
Q Consensus       168 -~~~d~~i~v~d~~~~~~~~~~~-----------------------~~--------~~~~-~~~~~~-------------  201 (299)
                       +..||+|++|++.+.+......                       ..        .... +.+.++             
T Consensus       207 tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~  286 (399)
T KOG0296|consen  207 TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD  286 (399)
T ss_pred             EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence             8888999999887753211110                       00        0000 111111             


Q ss_pred             -------C---CCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEee
Q 022303          202 -------F---DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLR  271 (299)
Q Consensus       202 -------~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  271 (299)
                             .   =+..++|+-||+|.|||+...+....+ .|...|+.+.|-+..+|++++.+|.|+.||.++|+++.++.
T Consensus       287 esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~  365 (399)
T KOG0296|consen  287 ESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYT  365 (399)
T ss_pred             hhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEe
Confidence                   1   122478999999999999977665555 78889999999988899999999999999999999999999


Q ss_pred             ccCCCCcEEEEEccCCCCeEEeeec
Q 022303          272 STDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       272 ~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +|..  +|.+++++|++++++++|-
T Consensus       366 GH~~--~Il~f~ls~~~~~vvT~s~  388 (399)
T KOG0296|consen  366 GHQM--GILDFALSPQKRLVVTVSD  388 (399)
T ss_pred             cCch--heeEEEEcCCCcEEEEecC
Confidence            9999  9999999999999999874

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=2.6e-27  Score=200.09  Aligned_cols=248  Identities=16%  Similarity=0.162  Sum_probs=192.6

Q ss_pred             chhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecC
Q 022303           22 ATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEG  101 (299)
Q Consensus        22 ~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g  101 (299)
                      ..++..+..+..+. -+.+|.+.|.++.+..++.++++                ...|.++++|  .+..+.      ..
T Consensus       346 ~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat----------------~sKD~svilW--r~~~~~------~~  400 (775)
T KOG0319|consen  346 PELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLAT----------------GSKDKSVILW--RLNNNC------SK  400 (775)
T ss_pred             CceEEEecCCCceE-EEeCchhheeeeeecccCcEEEE----------------ecCCceEEEE--EecCCc------ch
Confidence            34444433333322 34589999999987788878887                4466777777  221111      01


Q ss_pred             ceeeEEeeccccCeeEEEec-CC--EEEEEeCCCcEEEEecCCceeE-----E----EecCCCcee-EEEEecCCCEEE-
Q 022303          102 RIDIDQWKAHSVGVDQCRMK-RG--LILTGVGDKVMRLWSLEGYKCV-----E----EYSLPNAAS-LVDFDFDESKIV-  167 (299)
Q Consensus       102 ~~~~~~~~~h~~~i~~~~~~-~~--~l~s~~~dg~i~iwd~~~~~~~-----~----~~~~~~~~~-~~~~~~~~~~l~-  167 (299)
                      ...+....+|++.|.++.+. .+  .|+++|.|+++++|++...+..     .    +...|+..+ +++++|+.++++ 
T Consensus       401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT  480 (775)
T KOG0319|consen  401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT  480 (775)
T ss_pred             hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence            11134447999999999983 33  9999999999999998762211     1    223455444 599999999999 


Q ss_pred             EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-
Q 022303          168 GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-  244 (299)
Q Consensus       168 ~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-  244 (299)
                      |+.|++.++|+++...  .++.+|....- .+.|++.++.+++++.|++|+||.+.+.+++.+|.+|...|..+.|-.+ 
T Consensus       481 ~SqDktaKiW~le~~~l~~vLsGH~RGvw-~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~  559 (775)
T KOG0319|consen  481 GSQDKTAKIWDLEQLRLLGVLSGHTRGVW-CVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNG  559 (775)
T ss_pred             cccccceeeecccCceEEEEeeCCccceE-EEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCC
Confidence            9999999999999553  44555554433 4577777888999999999999999999999999999999999999987 


Q ss_pred             CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          245 QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       245 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +.|++++.||-|++|++.+++|+.++..|.+  .|++++.+|.+.++++|+-.
T Consensus       560 ~qliS~~adGliKlWnikt~eC~~tlD~H~D--rvWaL~~~~~~~~~~tgg~D  610 (775)
T KOG0319|consen  560 KQLISAGADGLIKLWNIKTNECEMTLDAHND--RVWALSVSPLLDMFVTGGGD  610 (775)
T ss_pred             cEEEeccCCCcEEEEeccchhhhhhhhhccc--eeEEEeecCccceeEecCCC
Confidence            8999999999999999999999999999999  99999999999999988743

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.6e-26  Score=171.58  Aligned_cols=207  Identities=14%  Similarity=0.129  Sum_probs=166.2

Q ss_pred             CCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEEec--CC-EEEEEeCCCcEEEEecCCceeEEEecCCCce
Q 022303           78 SGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMK--RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAA  154 (299)
Q Consensus        78 ~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  154 (299)
                      .|++.++|..           .....+++.++.|...|.++.|.  .+ .++++|+|++||+|+..-.+.+.++.+|...
T Consensus        81 GDGSLrl~d~-----------~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~  149 (311)
T KOG0277|consen   81 GDGSLRLFDL-----------TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSC  149 (311)
T ss_pred             cCceEEEecc-----------CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccE
Confidence            7788888842           22333577889999999999993  33 7888899999999999999999999999887


Q ss_pred             eE-EEEecCC-CEEE-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCc-ceee
Q 022303          155 SL-VDFDFDE-SKIV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSR-KCSQ  227 (299)
Q Consensus       155 ~~-~~~~~~~-~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~-~~~~  227 (299)
                      +. ..|+|.. ++++ ++.|+.+++||++.+.  ..+..|...+. +..|+..+++ +++|+.|+.|+.||+++- .++.
T Consensus       150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil-~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~  228 (311)
T KOG0277|consen  150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEIL-CCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLF  228 (311)
T ss_pred             EEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeE-eecccccCCcEEEecCCCceEEEEehhhccccce
Confidence            76 9999954 5566 9999999999998653  44556654433 2244444444 899999999999999874 4577


Q ss_pred             eccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCC-ceEEEeeccCCCCcEEEEEccC-CCCeEEeeeccc
Q 022303          228 IIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSD-QRVATLRSTDCTGHIICLMYPQ-FLHMLFFLCFLP  298 (299)
Q Consensus       228 ~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~-~g~~l~s~s~~~  298 (299)
                      ++.+|.-.|..++|+|.  .+|++++.|-+++|||...+ .++.+...|.+  .+..+.|++ ++.++|+++|-.
T Consensus       229 eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe  301 (311)
T KOG0277|consen  229 ELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDE  301 (311)
T ss_pred             eecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeeccccc
Confidence            88899999999999998  79999999999999999854 45677777777  899999998 677888888754

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=1.1e-26  Score=184.37  Aligned_cols=257  Identities=15%  Similarity=0.175  Sum_probs=203.8

Q ss_pred             CCCCCCCCCCCcchhccCcHHHHH--HHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhh
Q 022303           10 SPPPKKRSSKPRATIESLNGDIIC--MIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLE   87 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~   87 (299)
                      +.+.+.+.++.+..|.+|+-...+  .+.++.+-.+.++.++|.+++.+++.                ...|...++|  
T Consensus       185 ~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iA----------------as~d~~~r~W--  246 (459)
T KOG0288|consen  185 RNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIA----------------ASNDKNLRLW--  246 (459)
T ss_pred             cCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEe----------------ecCCCceeee--
Confidence            445677788899999999954444  66677788899999999999888775                3366777777  


Q ss_pred             hhhhccccceeecCceeeEEeeccccCeeEEEec-CC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCE
Q 022303           88 ELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK  165 (299)
Q Consensus        88 ~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (299)
                      .+.....          ..++.||++.|+++.|. .. .+++|+.|.+|++||+....|..++-..+.+..++.+  ...
T Consensus       247 nvd~~r~----------~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~  314 (459)
T KOG0288|consen  247 NVDSLRL----------RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISD  314 (459)
T ss_pred             eccchhh----------hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--cee
Confidence            2222222          34558999999999883 33 6999999999999999999888877766555555554  334


Q ss_pred             EE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc----CCceeEEE
Q 022303          166 IV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH----CAPVTSLS  240 (299)
Q Consensus       166 l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~i~~~~  240 (299)
                      ++ +-.|++|++||.++.........+.....+.+++++..+.+.+.|.++.+.|+++.+....+...    ....+.+.
T Consensus       315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv  394 (459)
T KOG0288|consen  315 VISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV  394 (459)
T ss_pred             eeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence            55 88899999999998876655555444456788899999999999999999999999888877621    23378899


Q ss_pred             eCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          241 LSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       241 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      |+|+ .|+++|+.||.|+||++.++++...+........|++++|+|.|.+|++++-
T Consensus       395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk  451 (459)
T KOG0288|consen  395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK  451 (459)
T ss_pred             ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence            9999 9999999999999999999999988887665325999999999999998864

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.94  E-value=1.4e-25  Score=182.38  Aligned_cols=253  Identities=19%  Similarity=0.228  Sum_probs=200.6

Q ss_pred             CCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcc
Q 022303           14 KKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKH   93 (299)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (299)
                      ....+..+..+..|+.+....+..+..|...+.++.++++++.+++                ...++.+++|..  ... 
T Consensus        23 ~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~----------------~~~~~~i~i~~~--~~~-   83 (289)
T cd00200          23 LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS----------------GSSDKTIRLWDL--ETG-   83 (289)
T ss_pred             EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEE----------------EcCCCeEEEEEc--Ccc-
Confidence            3344445678888988876666677788888888999999877775                223566666622  211 


Q ss_pred             ccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCc-eeEEEEecCCCEEE-EE
Q 022303           94 HRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GL  169 (299)
Q Consensus        94 ~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~  169 (299)
                               ..+..+..|...|.++.| +++ ++++++.|+.+++||+.+++....+..+.. +..++++|++.+++ ++
T Consensus        84 ---------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  154 (289)
T cd00200          84 ---------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS  154 (289)
T ss_pred             ---------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc
Confidence                     234455789999999999 444 778888899999999999998888886654 45599999988888 55


Q ss_pred             cCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-Ce
Q 022303          170 IGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QL  246 (299)
Q Consensus       170 ~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~  246 (299)
                      .++.+++||+++.+  ..+..+..... .+++.+++..+++++.++.+++||+++++.+..+..|...+.++.|+|+ .+
T Consensus       155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  233 (289)
T cd00200         155 QDGTIKLWDLRTGKCVATLTGHTGEVN-SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL  233 (289)
T ss_pred             CCCcEEEEEccccccceeEecCccccc-eEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcE
Confidence            59999999998654  33444443333 4678888888999999999999999998888888788889999999998 78


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          247 IISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       247 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +++++.||.|++||+.+++.+..+..+..  .|.+++|+|++++|++++.-
T Consensus       234 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d  282 (289)
T cd00200         234 LASGSEDGTIRVWDLRTGECVQTLSGHTN--SVTSLAWSPDGKRLASGSAD  282 (289)
T ss_pred             EEEEcCCCcEEEEEcCCceeEEEccccCC--cEEEEEECCCCCEEEEecCC
Confidence            88888899999999999999999987777  89999999999999998754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.94  E-value=2.4e-25  Score=205.14  Aligned_cols=236  Identities=10%  Similarity=0.049  Sum_probs=178.3

Q ss_pred             ccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhc-cccceeecCceeeEEeeccccCee
Q 022303           38 SLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMK-HHRFALEEGRIDIDQWKAHSVGVD  116 (299)
Q Consensus        38 ~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~~~h~~~i~  116 (299)
                      .+.|.+.|.+++|+++++++++                ...|+.+++|..  ... ......   ......+. +...|.
T Consensus       479 ~~~~~~~V~~i~fs~dg~~lat----------------gg~D~~I~iwd~--~~~~~~~~~~---~~~~~~~~-~~~~v~  536 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFAT----------------AGVNKKIKIFEC--ESIIKDGRDI---HYPVVELA-SRSKLS  536 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEE----------------EeCCCEEEEEEC--Cccccccccc---ccceEEec-ccCcee
Confidence            4458999999999999999987                336677777732  110 000000   01112222 346788


Q ss_pred             EEEe-c-CC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEec-CCCEEE-EEcCCeEEEEecCCceeeeeccC
Q 022303          117 QCRM-K-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDF-DESKIV-GLIGTRICIWRRNGLRSVFPSRE  190 (299)
Q Consensus       117 ~~~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~-~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~  190 (299)
                      ++.| + .+ +|++++.||+|++||+.+++.+..+..|...+ .++|+| ++.+|+ ++.|+.|++||+++.........
T Consensus       537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~  616 (793)
T PLN00181        537 GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT  616 (793)
T ss_pred             eEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence            8988 3 23 99999999999999999999999998886554 599996 678888 99999999999987653322211


Q ss_pred             Cccceeeee-ccCCCeEEEecCCCcEEEEEcCCcc-eeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCC-----
Q 022303          191 GTFMKGLCM-RYFDPEAVVGCEDGTARVFDMYSRK-CSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSS-----  263 (299)
Q Consensus       191 ~~~~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~-----  263 (299)
                      ......+.+ .+++..+++|+.|+.|++||+++.+ .+..+.+|...|.++.|.++.+|++++.|++|++||++.     
T Consensus       617 ~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~  696 (793)
T PLN00181        617 KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGI  696 (793)
T ss_pred             CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcccc
Confidence            112223345 3457779999999999999998765 466777899999999998558999999999999999974     


Q ss_pred             -CceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          264 -DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       264 -~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                       .+++.++.+|..  .+..++|+|++.+|++|+.-
T Consensus       697 ~~~~l~~~~gh~~--~i~~v~~s~~~~~lasgs~D  729 (793)
T PLN00181        697 NETPLHSFMGHTN--VKNFVGLSVSDGYIATGSET  729 (793)
T ss_pred             CCcceEEEcCCCC--CeeEEEEcCCCCEEEEEeCC
Confidence             357888888887  89999999999999999853

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=5.3e-26  Score=192.62  Aligned_cols=254  Identities=12%  Similarity=0.114  Sum_probs=199.8

Q ss_pred             HHhhccCccchhhHHHhhhhHHHHhh----hhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCcee-----
Q 022303           34 MIFSSLGFFDLVRCSAVCKSWNAIIN----RCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRID-----  104 (299)
Q Consensus        34 ~i~~~~~h~~~v~~~~~~~~~~~l~~----~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~-----  104 (299)
                      .-.++++|+..|+.+++|.+...+++    +..+|+.-..+-.+.+  ...    |..+..|-|..+.+..|...     
T Consensus       365 ~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi--~~~----y~l~~~Fvpgd~~Iv~G~k~Gel~v  438 (888)
T KOG0306|consen  365 SNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTI--TCG----YILASKFVPGDRYIVLGTKNGELQV  438 (888)
T ss_pred             ceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEe--ccc----cEEEEEecCCCceEEEeccCCceEE
Confidence            34577899999999999999999988    4556654211110000  000    22222233333333333221     


Q ss_pred             --------eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCC-----ce--------eEEEecCCCceeEEEEec
Q 022303          105 --------IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG-----YK--------CVEEYSLPNAASLVDFDF  161 (299)
Q Consensus       105 --------~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~-----~~--------~~~~~~~~~~~~~~~~~~  161 (299)
                              +.+.++|.+.|+.+.. |++ .+++||.|.+|++||..-     +.        ...+++..+.+.++.++|
T Consensus       439 fdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp  518 (888)
T KOG0306|consen  439 FDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP  518 (888)
T ss_pred             EEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence                    3344799999999998 777 999999999999999641     11        124556778888899999


Q ss_pred             CCCEEE-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeE
Q 022303          162 DESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTS  238 (299)
Q Consensus       162 ~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~  238 (299)
                      |+++++ +--|.+++||-+.+-+  ..+.+|.-++. ++.++|++..+++|+.|..|++|-++=|.+...+.+|.+.|.+
T Consensus       519 dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~-smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~  597 (888)
T KOG0306|consen  519 DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVL-SMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMS  597 (888)
T ss_pred             CCcEEEEEeccCeEEEEEecceeeeeeeccccccee-EEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeE
Confidence            999999 8899999999998876  44556655544 5688999999999999999999999999999999999999999


Q ss_pred             EEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          239 LSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       239 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +.|.|. .++++++.|+.|+-||-..-++++.+.+|..  .|++++.+|+|.+++++|-
T Consensus       598 V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~--ev~cLav~~~G~~vvs~sh  654 (888)
T KOG0306|consen  598 VQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS--EVWCLAVSPNGSFVVSSSH  654 (888)
T ss_pred             EEEcccceeEEEecCcceEEeechhhhhhheeeccchh--eeeeeEEcCCCCeEEeccC
Confidence            999999 8999999999999999999999999999998  9999999999999999984

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.94  E-value=2e-26  Score=186.20  Aligned_cols=191  Identities=15%  Similarity=0.227  Sum_probs=170.3

Q ss_pred             eEEeeccccCeeEEEe-c-CC-EEEEEeCCCcEEEEecCC-ceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEe
Q 022303          105 IDQWKAHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEG-YKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWR  178 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~-~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d  178 (299)
                      +.+|.||+..|+++.| + .+ +|++++.|+.|+||++.. +.++++|.+|...+. ++|+.+|..++ ++.|+.+++||
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD  286 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD  286 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence            7889999999999987 5 44 999999999999999876 899999999987777 99999999988 99999999999


Q ss_pred             cCCceeeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcE
Q 022303          179 RNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSI  256 (299)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i  256 (299)
                      +++++....-+.+....++.+.|+++. +++|+.|+.|+.||+++++.++++..|-+.|..+.|-++ +.+++.+.|+++
T Consensus       287 tETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~  366 (503)
T KOG0282|consen  287 TETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSV  366 (503)
T ss_pred             cccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccE
Confidence            999998888888888888899999954 889999999999999999999999999999999999999 999999999999


Q ss_pred             EEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          257 AISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +||+.+.+-.++.+..+..- ...++..+|+++++++=|+
T Consensus       367 riWe~~~~v~ik~i~~~~~h-smP~~~~~P~~~~~~aQs~  405 (503)
T KOG0282|consen  367 RIWENRIPVPIKNIADPEMH-TMPCLTLHPNGKWFAAQSM  405 (503)
T ss_pred             EEEEcCCCccchhhcchhhc-cCcceecCCCCCeehhhcc
Confidence            99999988776655443332 6788999999998887554

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.7e-26  Score=182.26  Aligned_cols=190  Identities=17%  Similarity=0.154  Sum_probs=143.4

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCC--CceeEEEEecCCCEEE-EEcCCeEEEEec
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP--NAASLVDFDFDESKIV-GLIGTRICIWRR  179 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~-~~~d~~i~v~d~  179 (299)
                      .+++.+|..+|..+.| ||+ +|++++.|..+++||+.+|.+...+...  ..+.+++|.||+..++ |+.|+.+..||+
T Consensus       262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl  341 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL  341 (519)
T ss_pred             eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecC
Confidence            5677899999999999 666 9999999999999999999999888754  4556699999999988 999999999999


Q ss_pred             CCce-eeeeccCCcccee-----------------------------------------eeeccCCCeEEEecCCCcEEE
Q 022303          180 NGLR-SVFPSREGTFMKG-----------------------------------------LCMRYFDPEAVVGCEDGTARV  217 (299)
Q Consensus       180 ~~~~-~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~l~s~~~d~~i~i  217 (299)
                      .+.. ...+.........                                         ++++-++.++++--.+..+++
T Consensus       342 Dgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~L  421 (519)
T KOG0293|consen  342 DGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHL  421 (519)
T ss_pred             CcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEE
Confidence            7642 1111111111112                                         234444444445555566777


Q ss_pred             EEcCCcceeeeccccCCc--eeEEEeCC-C-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCC-CeEE
Q 022303          218 FDMYSRKCSQIIRMHCAP--VTSLSLSE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL-HMLF  292 (299)
Q Consensus       218 wd~~~~~~~~~~~~~~~~--i~~~~~~~-~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~  292 (299)
                      ||++..+.++.+.+|...  |..-+|-- + .++++|++|+.|+||+..+|+++..+.+|..  .|++++|+|.. .++|
T Consensus       422 WDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~A  499 (519)
T KOG0293|consen  422 WDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFA  499 (519)
T ss_pred             eecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhh
Confidence            777766667777666543  33334442 3 8999999999999999999999999999998  99999999965 5667


Q ss_pred             eeec
Q 022303          293 FLCF  296 (299)
Q Consensus       293 s~s~  296 (299)
                      +||-
T Consensus       500 SasD  503 (519)
T KOG0293|consen  500 SASD  503 (519)
T ss_pred             ccCC
Confidence            7664

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=4.8e-25  Score=189.82  Aligned_cols=228  Identities=12%  Similarity=0.065  Sum_probs=167.9

Q ss_pred             ccCccchhhHHHhhh-hHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCee
Q 022303           38 SLGFFDLVRCSAVCK-SWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVD  116 (299)
Q Consensus        38 ~~~h~~~v~~~~~~~-~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~  116 (299)
                      +.+|.+.|.+++|+| +++.|++                ...|+++++|.  +......   ..-...+..+.+|...|.
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaS----------------gS~DgtIkIWd--i~~~~~~---~~~~~~l~~L~gH~~~V~  129 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFT----------------ASEDGTIMGWG--IPEEGLT---QNISDPIVHLQGHTKKVG  129 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEE----------------EeCCCEEEEEe--cCCCccc---cccCcceEEecCCCCcEE
Confidence            568999999999999 7778886                34678888883  3221110   011123567899999999


Q ss_pred             EEEe-cC--CEEEEEeCCCcEEEEecCCceeEEEecCCCc-eeEEEEecCCCEEE-EEcCCeEEEEecCCceee--eecc
Q 022303          117 QCRM-KR--GLILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV--FPSR  189 (299)
Q Consensus       117 ~~~~-~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~--~~~~  189 (299)
                      ++.| ++  ++|++|+.|++|++||+.+++.+..+..|.. +..++|+|++.+|+ ++.|+.|++||++++..+  +..|
T Consensus       130 ~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H  209 (493)
T PTZ00421        130 IVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH  209 (493)
T ss_pred             EEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence            9999 43  3899999999999999999999988887765 44599999999999 999999999999987633  3445


Q ss_pred             CCccceeeeeccCCCeEEEec----CCCcEEEEEcCCcc-eeeeccc-cCCceeEEEeCCC-CeEEEEe-CCCcEEEEeC
Q 022303          190 EGTFMKGLCMRYFDPEAVVGC----EDGTARVFDMYSRK-CSQIIRM-HCAPVTSLSLSED-QLIISGS-SLGSIAISGL  261 (299)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~-~~~~~~~-~~~~i~~~~~~~~-~~l~~~~-~dg~i~iwd~  261 (299)
                      .+.......|.+.+..+++++    .|+.|++||+++.. .+..... ....+....|+++ ++|++++ .|+.|++||+
T Consensus       210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl  289 (493)
T PTZ00421        210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL  289 (493)
T ss_pred             CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence            443333346677777766543    47899999998754 3333322 2344566678888 8888877 5999999999


Q ss_pred             CCCceEEEeeccCCCCcEEEEEccCC
Q 022303          262 SSDQRVATLRSTDCTGHIICLMYPQF  287 (299)
Q Consensus       262 ~~~~~~~~~~~~~~~~~i~~~~~s~~  287 (299)
                      .+++.+......... ++.+++|.|.
T Consensus       290 ~~~~~~~~~~~~s~~-~~~g~~~~pk  314 (493)
T PTZ00421        290 MNERLTFCSSYSSVE-PHKGLCMMPK  314 (493)
T ss_pred             eCCceEEEeeccCCC-CCcceEeccc
Confidence            999887766544322 6778888774

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.93  E-value=6.5e-25  Score=178.41  Aligned_cols=229  Identities=20%  Similarity=0.268  Sum_probs=184.3

Q ss_pred             hhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCe
Q 022303           36 FSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGV  115 (299)
Q Consensus        36 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i  115 (299)
                      ..+.+|.+.|.+++++++++.+++                ...++.+++|..  ...          .....+..|...+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~----------------~~~~g~i~i~~~--~~~----------~~~~~~~~~~~~i   54 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLAT----------------GSGDGTIKVWDL--ETG----------ELLRTLKGHTGPV   54 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEE----------------eecCcEEEEEEe--eCC----------CcEEEEecCCcce
Confidence            355689999999999999888886                223556666622  211          1344557899999


Q ss_pred             eEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCC-ceeEEEEecCCCEEE-EEcCCeEEEEecCCcee--eeecc
Q 022303          116 DQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV-GLIGTRICIWRRNGLRS--VFPSR  189 (299)
Q Consensus       116 ~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~--~~~~~  189 (299)
                      ..+.| +++ ++++++.||.|++||+.+++.+..+..+. .+..+.|++++++++ ++.++.+.+||+.+.+.  .+..+
T Consensus        55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  134 (289)
T cd00200          55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH  134 (289)
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC
Confidence            88888 565 99999999999999999988888888776 455599999988888 55599999999986542  33333


Q ss_pred             CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEE
Q 022303          190 EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVA  268 (299)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~  268 (299)
                      ..... .+++.+.+..+++++.++.+++||+++++.+..+..|...+.++.|+|+ +.+++++.|+.|++||+++++.+.
T Consensus       135 ~~~i~-~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~  213 (289)
T cd00200         135 TDWVN-SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG  213 (289)
T ss_pred             CCcEE-EEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceec
Confidence            33333 4577787777888887999999999988888888888889999999999 789999999999999999999998


Q ss_pred             EeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          269 TLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       269 ~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      .+..+..  .+.+++|+|++.++++++
T Consensus       214 ~~~~~~~--~i~~~~~~~~~~~~~~~~  238 (289)
T cd00200         214 TLRGHEN--GVNSVAFSPDGYLLASGS  238 (289)
T ss_pred             chhhcCC--ceEEEEEcCCCcEEEEEc
Confidence            8877777  899999999988888876

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.93  E-value=6.7e-26  Score=178.11  Aligned_cols=256  Identities=13%  Similarity=0.099  Sum_probs=191.5

Q ss_pred             CCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHh-hhhHH--HHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhh
Q 022303           12 PPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAV-CKSWN--AIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEE   88 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~-~~~~~--~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~   88 (299)
                      ++-.-.+.++-++++|+.+- ++++.+.+|.+.+..+++ .++..  .+++                ...|.++++|...
T Consensus       115 ~~~IltgsYDg~~riWd~~G-k~~~~~~Ght~~ik~v~~v~~n~~~~~fvs----------------as~Dqtl~Lw~~~  177 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLKG-KSIKTIVGHTGPIKSVAWVIKNSSSCLFVS----------------ASMDQTLRLWKWN  177 (423)
T ss_pred             CceEEEeecCCeeEEEecCC-ceEEEEecCCcceeeeEEEecCCccceEEE----------------ecCCceEEEEEec
Confidence            44555566788888888753 567778899988875444 33322  1332                2266677777331


Q ss_pred             hhhccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCC-------------------------
Q 022303           89 LAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG-------------------------  141 (299)
Q Consensus        89 ~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~-------------------------  141 (299)
                          +....+.    .++.-+||...|-++.. +++ .+++|++|..|++|+..+                         
T Consensus       178 ----~~~~~~~----~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~  249 (423)
T KOG0313|consen  178 ----VGENKVK----ALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT  249 (423)
T ss_pred             ----Cchhhhh----HHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence                1110000    01222599999999987 666 999999999999999321                         


Q ss_pred             ceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEE
Q 022303          142 YKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFD  219 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd  219 (299)
                      ..++-++.+|...+. +.|++ ...++ ++.|++|+.||+.++........+.....+...+....|++|+.|..+++||
T Consensus       250 r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~D  328 (423)
T KOG0313|consen  250 RTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWD  328 (423)
T ss_pred             cCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecC
Confidence            235566778877776 88887 44555 9999999999999987665555555555667777778899999999999999


Q ss_pred             cCCcc---eeeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCc-eEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022303          220 MYSRK---CSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQ-RVATLRSTDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       220 ~~~~~---~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      .+++.   ..+++.+|...|.++.|+|.  .+|++|+.|+++++||+|+.+ ++..+.+|.+  .|.++.|. ++.++++
T Consensus       329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D--Kvl~vdW~-~~~~IvS  405 (423)
T KOG0313|consen  329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND--KVLSVDWN-EGGLIVS  405 (423)
T ss_pred             CCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc--eEEEEecc-CCceEEe
Confidence            99753   35677899999999999997  689999999999999999987 9999999988  99999997 5567888


Q ss_pred             eec
Q 022303          294 LCF  296 (299)
Q Consensus       294 ~s~  296 (299)
                      |+-
T Consensus       406 GGa  408 (423)
T KOG0313|consen  406 GGA  408 (423)
T ss_pred             ccC
Confidence            763

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=7.2e-25  Score=185.43  Aligned_cols=192  Identities=18%  Similarity=0.163  Sum_probs=162.8

Q ss_pred             eEEeeccccCeeEEE-ecCC-EEEEEeCCCcEEEEecCCce----eEEEecCCCceeE-EEEecCC-CEEE-EEcCCeEE
Q 022303          105 IDQWKAHSVGVDQCR-MKRG-LILTGVGDKVMRLWSLEGYK----CVEEYSLPNAASL-VDFDFDE-SKIV-GLIGTRIC  175 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~-~~~~-~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~-~~~~~~~-~~l~-~~~d~~i~  175 (299)
                      .+.+.||++.|.++. +..+ +|+||+.|.++++|.++++.    ++....+|...+. ++++..+ ..++ ++.|.+++
T Consensus       358 c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK  437 (775)
T KOG0319|consen  358 CQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK  437 (775)
T ss_pred             eEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence            567799999999997 5666 99999999999999885433    4445567766554 8886655 4566 99999999


Q ss_pred             EEecCCce-----------eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC
Q 022303          176 IWRRNGLR-----------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED  244 (299)
Q Consensus       176 v~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  244 (299)
                      +|++...+           .....|...++ +++++|++..+++|++|++.++|++++.....++.+|...|.++.|+|.
T Consensus       438 ~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN-~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~  516 (775)
T KOG0319|consen  438 LWDLPKSKETAFPIVLTCRYTERAHDKDIN-CVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN  516 (775)
T ss_pred             EecCCCcccccccceehhhHHHHhhccccc-ceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccc
Confidence            99998722           12234455555 5699999999999999999999999999999999999999999999998


Q ss_pred             -CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecccC
Q 022303          245 -QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLPL  299 (299)
Q Consensus       245 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~~  299 (299)
                       +.++|+|.|++|+||.+.+..|++++.+|..  .|..+.|-.+|+.|++|+-.|+
T Consensus       517 dq~laT~SgD~TvKIW~is~fSClkT~eGH~~--aVlra~F~~~~~qliS~~adGl  570 (775)
T KOG0319|consen  517 DQLLATCSGDKTVKIWSISTFSCLKTFEGHTS--AVLRASFIRNGKQLISAGADGL  570 (775)
T ss_pred             cceeEeccCCceEEEEEeccceeeeeecCccc--eeEeeeeeeCCcEEEeccCCCc
Confidence             9999999999999999999999999999998  9999999999999999987654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.93  E-value=5.4e-25  Score=202.89  Aligned_cols=253  Identities=12%  Similarity=0.073  Sum_probs=187.1

Q ss_pred             CCCCCCCCcchhccCcHHHHH--------HHhhccCccchhhHHHhhhh-HHHHhhhhhHHHHHHhhhcCCCCCCCchhh
Q 022303           13 PKKRSSKPRATIESLNGDIIC--------MIFSSLGFFDLVRCSAVCKS-WNAIINRCKLLQLLYCKLHGFSNTSGSSMR   83 (299)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~--------~i~~~~~h~~~v~~~~~~~~-~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~   83 (299)
                      ...+.++.+..+++|+.+...        .+.. +.+...+.+++|++. +.++++                ...|+.++
T Consensus       496 ~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~las----------------~~~Dg~v~  558 (793)
T PLN00181        496 EFFATAGVNKKIKIFECESIIKDGRDIHYPVVE-LASRSKLSGICWNSYIKSQVAS----------------SNFEGVVQ  558 (793)
T ss_pred             CEEEEEeCCCEEEEEECCcccccccccccceEE-ecccCceeeEEeccCCCCEEEE----------------EeCCCeEE
Confidence            344566678889999865321        0111 223455667777654 455655                23678888


Q ss_pred             hhhhhhhhccccceeecCceeeEEeeccccCeeEEEe-c-CC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEe
Q 022303           84 LHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD  160 (299)
Q Consensus        84 ~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  160 (299)
                      +|..  ..          ...+..+.+|.+.|+++.| + ++ +|++|+.||+|++||+.+++.+..+..+..+..+.|.
T Consensus       559 lWd~--~~----------~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~  626 (793)
T PLN00181        559 VWDV--AR----------SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFP  626 (793)
T ss_pred             EEEC--CC----------CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEe
Confidence            8832  21          2335566899999999999 3 44 9999999999999999999999888877777778885


Q ss_pred             -cCCCEEE-EEcCCeEEEEecCCce---eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc------ceeeec
Q 022303          161 -FDESKIV-GLIGTRICIWRRNGLR---SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR------KCSQII  229 (299)
Q Consensus       161 -~~~~~l~-~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------~~~~~~  229 (299)
                       +++..++ |+.|+.|++||+++..   ..+..|...+. .+.|. ++..+++++.|+.|++||++.+      +.+..+
T Consensus       627 ~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~-~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~  704 (793)
T PLN00181        627 SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS-YVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF  704 (793)
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEE-EEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE
Confidence             5688888 9999999999998754   23344444433 33453 5667999999999999999743      567788


Q ss_pred             cccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEee-------------ccCCCCcEEEEEccCCCCeEEeee
Q 022303          230 RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLR-------------STDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       230 ~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      .+|...+..++|+|+ .+|++|+.|+.|++|+......+..+.             .+..  .|.+++|+|++.+|++|+
T Consensus       705 ~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~V~~v~ws~~~~~lva~~  782 (793)
T PLN00181        705 MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQ--FISSVCWRGQSSTLVAAN  782 (793)
T ss_pred             cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCc--EEEEEEEcCCCCeEEEec
Confidence            899999999999998 999999999999999987665443321             1222  699999999999999998


Q ss_pred             ccc
Q 022303          296 FLP  298 (299)
Q Consensus       296 ~~~  298 (299)
                      ..+
T Consensus       783 ~dG  785 (793)
T PLN00181        783 STG  785 (793)
T ss_pred             CCC
Confidence            644

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.93  E-value=1.1e-25  Score=176.94  Aligned_cols=240  Identities=17%  Similarity=0.108  Sum_probs=181.7

Q ss_pred             CCCCCCCcchhccCcHHHHH----HHhhccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhcCCCCCCCchhhh
Q 022303           14 KKRSSKPRATIESLNGDIIC----MIFSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLHGFSNTSGSSMRL   84 (299)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~----~i~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~~~~~~~d~~~~~   84 (299)
                      +-...+.++++.+|..+...    .+....||...|.++.+.+++..+++     ...+|.. ........  ++...|-
T Consensus       161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~-~~~~~~~~--E~~s~~r  237 (423)
T KOG0313|consen  161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSV-ETDEEDEL--ESSSNRR  237 (423)
T ss_pred             eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeeccc-CCCccccc--cccchhh
Confidence            34456789999999865443    34445599999999999999999997     3444530 00000000  0000000


Q ss_pred             hhhhhhhccccceeecCceeeEEeeccccCeeEEEecCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCC
Q 022303           85 HLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE  163 (299)
Q Consensus        85 ~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  163 (299)
                      -     .............++.++.||+++|.++.|++. .++++++|.+|+.||+.++.++.++.......+++.+|..
T Consensus       238 r-----k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~  312 (423)
T KOG0313|consen  238 R-----KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLS  312 (423)
T ss_pred             h-----hhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeeccccc
Confidence            0     000000111223347888999999999999655 9999999999999999999999999998888889999999


Q ss_pred             CEEE-EEcCCeEEEEecCCce-----eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcc-eeeeccccCCc
Q 022303          164 SKIV-GLIGTRICIWRRNGLR-----SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK-CSQIIRMHCAP  235 (299)
Q Consensus       164 ~~l~-~~~d~~i~v~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~  235 (299)
                      ++|+ |+.|..+++||.+++.     ..+.+|.+-+. .+.|+|.+.+ |++|+.|+++++||+++.+ ++..+.+|.+.
T Consensus       313 ~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVs-svkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK  391 (423)
T KOG0313|consen  313 KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVS-SVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK  391 (423)
T ss_pred             ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhh-heecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce
Confidence            9999 9999999999999764     34455555444 4578888887 8999999999999999877 89999999999


Q ss_pred             eeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022303          236 VTSLSLSEDQLIISGSSLGSIAISGLS  262 (299)
Q Consensus       236 i~~~~~~~~~~l~~~~~dg~i~iwd~~  262 (299)
                      |.++.|+....+++|+.|.+|+|+.-.
T Consensus       392 vl~vdW~~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  392 VLSVDWNEGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EEEEeccCCceEEeccCcceEEEeccc
Confidence            999999888899999999999998753

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=8.7e-25  Score=189.33  Aligned_cols=250  Identities=10%  Similarity=0.066  Sum_probs=175.6

Q ss_pred             CCCcchhccCcHHHHHHHhhccCccchhhHHHhhhh-HHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccc
Q 022303           18 SKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKS-WNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRF   96 (299)
Q Consensus        18 ~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~-~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (299)
                      ++....+.+|+......+..+.+|.+.|.+++|+|+ ++.|++                ...|+.+++|  ++.....  
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLAS----------------gS~DgtIrIW--Di~t~~~--  109 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILAS----------------GSEDLTIRVW--EIPHNDE--  109 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEE----------------EeCCCeEEEE--ECCCCCc--
Confidence            455566777776555566677899999999999997 678876                3467888888  3322110  


Q ss_pred             eeecCceeeEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCC
Q 022303           97 ALEEGRIDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGT  172 (299)
Q Consensus        97 ~l~~g~~~~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~  172 (299)
                      ....-...+..+.+|...|.++.| |++  +|++++.|++|++||+.+++.+..+..+..+.+++|+++|.+|+ ++.|+
T Consensus       110 ~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~  189 (568)
T PTZ00420        110 SVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGK  189 (568)
T ss_pred             cccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCC
Confidence            000001234567899999999999 545  56899999999999999998887777666677799999999999 88899


Q ss_pred             eEEEEecCCcee--eeeccCCcccee----eeeccCCCeEEEecCCC----cEEEEEcCC-cceeeecc--ccCCceeEE
Q 022303          173 RICIWRRNGLRS--VFPSREGTFMKG----LCMRYFDPEAVVGCEDG----TARVFDMYS-RKCSQIIR--MHCAPVTSL  239 (299)
Q Consensus       173 ~i~v~d~~~~~~--~~~~~~~~~~~~----~~~~~~~~~l~s~~~d~----~i~iwd~~~-~~~~~~~~--~~~~~i~~~  239 (299)
                      .|++||++++..  .+..|.+.....    ..+++++.++++++.|+    .|++||+++ ++++..+.  .+.+.+...
T Consensus       190 ~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~  269 (568)
T PTZ00420        190 HMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPH  269 (568)
T ss_pred             EEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEe
Confidence            999999998753  345565543211    22346777888877664    799999995 55555443  223333333


Q ss_pred             EeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCC
Q 022303          240 SLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL  288 (299)
Q Consensus       240 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g  288 (299)
                      ...++ .++++|+.|+.|++|++..+. +..+.......++.+++|.|..
T Consensus       270 ~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        270 YDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             eeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence            33344 788999999999999998764 3333332222288999999964

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=3.2e-23  Score=178.63  Aligned_cols=188  Identities=9%  Similarity=0.080  Sum_probs=146.6

Q ss_pred             EEeeccccCeeEEEe-c-CC-EEEEEeCCCcEEEEecCCc-------eeEEEecCCCceeE-EEEecCC-CEEE-EEcCC
Q 022303          106 DQWKAHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEGY-------KCVEEYSLPNAASL-VDFDFDE-SKIV-GLIGT  172 (299)
Q Consensus       106 ~~~~~h~~~i~~~~~-~-~~-~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~-~~~~~~~-~~l~-~~~d~  172 (299)
                      ..+.+|.+.|+++.| | ++ +|++|+.|++|++||+.++       +++..+.+|...+. ++|+|++ ++|+ ++.|+
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            346899999999999 5 44 9999999999999999765       34667777765554 9999986 5777 89999


Q ss_pred             eEEEEecCCcee--eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCc-eeEEEeCCC-CeEE
Q 022303          173 RICIWRRNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP-VTSLSLSED-QLII  248 (299)
Q Consensus       173 ~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~-~~l~  248 (299)
                      .|++||++++..  .+..+...+. .++|++++..+++++.|+.|++||+++++.+..+..|.+. +..+.|.++ ..++
T Consensus       149 tVrIWDl~tg~~~~~l~~h~~~V~-sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv  227 (493)
T PTZ00421        149 VVNVWDVERGKAVEVIKCHSDQIT-SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII  227 (493)
T ss_pred             EEEEEECCCCeEEEEEcCCCCceE-EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence            999999998753  3444554443 4689999999999999999999999999998888888764 346778887 6666


Q ss_pred             EEe----CCCcEEEEeCCCCc-eEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          249 SGS----SLGSIAISGLSSDQ-RVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       249 ~~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      +++    .|+.|++||+++.. ++.....+... .+....|++++.+|++|+
T Consensus       228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~-~~~~~~~d~d~~~L~lgg  278 (493)
T PTZ00421        228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS-ALFIPFFDEDTNLLYIGS  278 (493)
T ss_pred             EEecCCCCCCeEEEEeCCCCCCceeEeccCCCC-ceEEEEEcCCCCEEEEEE
Confidence            654    47999999998754 44444433332 566778999999998876

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=7.5e-25  Score=192.58  Aligned_cols=270  Identities=11%  Similarity=0.075  Sum_probs=203.6

Q ss_pred             CCCCCCCCCC--CcchhccCcHH------------HHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCC
Q 022303           10 SPPPKKRSSK--PRATIESLNGD------------IICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFS   75 (299)
Q Consensus        10 ~~~~~~~~~~--~~~~~~~~~~~------------~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~   75 (299)
                      ++..|-+.++  .+..+.+|+.+            ..++++.+..|.+.|+|+.|+++|.++|+                
T Consensus        23 pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs----------------   86 (942)
T KOG0973|consen   23 PDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS----------------   86 (942)
T ss_pred             CCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee----------------
Confidence            3445555665  55555556543            33456677789999999999999999998                


Q ss_pred             CCCCchhhhhhhhhhhccccceeec-Cc-------eeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeE
Q 022303           76 NTSGSSMRLHLEELAMKHHRFALEE-GR-------IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCV  145 (299)
Q Consensus        76 ~~~d~~~~~~~~~~~~~~~~~~l~~-g~-------~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~  145 (299)
                      ..+|.-+.+|-+.-  .+.+..+-. |+       ..+.++.+|.+.|..+.| |++ +|++++.|++|.+||..+.+.+
T Consensus        87 GSDD~~v~iW~~~~--~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~  164 (942)
T KOG0973|consen   87 GSDDRLVMIWERAE--IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL  164 (942)
T ss_pred             ccCcceEEEeeecc--cCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceee
Confidence            33444444553321  111111111 11       127888999999999999 666 9999999999999999999999


Q ss_pred             EEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCC-----ccceeeeeccCCCeEEEecC----C
Q 022303          146 EEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREG-----TFMKGLCMRYFDPEAVVGCE----D  212 (299)
Q Consensus       146 ~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~l~s~~~----d  212 (299)
                      ..+++|...+. +.|+|-|++++ -+.|++|++|++.+-.  +....+..     .....+.|+|++++|++...    -
T Consensus       165 ~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~  244 (942)
T KOG0973|consen  165 KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGK  244 (942)
T ss_pred             eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCc
Confidence            99999987776 99999999999 8999999999976532  22222221     12224689999999887532    3


Q ss_pred             CcEEEEEcCCcceeeeccccCCceeEEEeCCC------C------------eEEEEeCCCcEEEEeCCCCceEEEeeccC
Q 022303          213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED------Q------------LIISGSSLGSIAISGLSSDQRVATLRSTD  274 (299)
Q Consensus       213 ~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~------~------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  274 (299)
                      ..+.|.+..+.+.-..+.+|..++.++.|+|.      +            .+|+|+.|++|.||.....+++.....-.
T Consensus       245 ~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf  324 (942)
T KOG0973|consen  245 STIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF  324 (942)
T ss_pred             ceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh
Confidence            45889998888888888899999999999971      3            68899999999999998888776665444


Q ss_pred             CCCcEEEEEccCCCCeEEeeeccc
Q 022303          275 CTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       275 ~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      .. .|..|+|+|||..|+++|+-+
T Consensus       325 ~~-SI~DmsWspdG~~LfacS~DG  347 (942)
T KOG0973|consen  325 NK-SIVDMSWSPDGFSLFACSLDG  347 (942)
T ss_pred             cC-ceeeeeEcCCCCeEEEEecCC
Confidence            43 899999999999999999865

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.92  E-value=4.7e-25  Score=164.67  Aligned_cols=237  Identities=13%  Similarity=0.075  Sum_probs=187.9

Q ss_pred             HHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEe
Q 022303           29 GDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQW  108 (299)
Q Consensus        29 ~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~  108 (299)
                      .+++.-|-.|++|.+.|.....+++....|+                ...|.+.|+|..  ..+.....+          
T Consensus        46 g~tgdwigtfeghkgavw~~~l~~na~~aas----------------aaadftakvw~a--~tgdelhsf----------   97 (334)
T KOG0278|consen   46 GDTGDWIGTFEGHKGAVWSATLNKNATRAAS----------------AAADFTAKVWDA--VTGDELHSF----------   97 (334)
T ss_pred             CCCCCcEEeeeccCcceeeeecCchhhhhhh----------------hcccchhhhhhh--hhhhhhhhh----------
Confidence            4556677889999999999999999888887                446777788832  333322222          


Q ss_pred             eccccCeeEEEec-CC-EEEEEeCCCcEEEEecCCce-eEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce
Q 022303          109 KAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYK-CVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR  183 (299)
Q Consensus       109 ~~h~~~i~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~  183 (299)
                       .|..-|.+++|. +. +|++|+.+..++|||++..+ +...+.+|...+. +.|....+.++ ++.|++|++||.+++.
T Consensus        98 -~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt  176 (334)
T KOG0278|consen   98 -EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT  176 (334)
T ss_pred             -hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc
Confidence             688899999994 33 99999999999999998654 4556777766665 88888777777 7889999999999987


Q ss_pred             eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022303          184 SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS  262 (299)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~  262 (299)
                      .+...........+-+++++.++. -...+.|.+||..+...+..++. ...|.+..++|+ .++++|+.|..++.||..
T Consensus       177 ~v~sL~~~s~VtSlEvs~dG~ilT-ia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~  254 (334)
T KOG0278|consen  177 EVQSLEFNSPVTSLEVSQDGRILT-IAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYN  254 (334)
T ss_pred             EEEEEecCCCCcceeeccCCCEEE-EecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEecc
Confidence            544433333333456777776654 44567899999999999988864 456999999999 899999999999999999


Q ss_pred             CCceEEEe-eccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          263 SDQRVATL-RSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       263 ~~~~~~~~-~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      +++.+..+ ++|.+  +|.|+.|+|+|...++||.-+
T Consensus       255 TgeEi~~~nkgh~g--pVhcVrFSPdGE~yAsGSEDG  289 (334)
T KOG0278|consen  255 TGEEIGSYNKGHFG--PVHCVRFSPDGELYASGSEDG  289 (334)
T ss_pred             CCceeeecccCCCC--ceEEEEECCCCceeeccCCCc
Confidence            99998886 88888  999999999999999998643

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=5e-24  Score=160.78  Aligned_cols=226  Identities=15%  Similarity=0.140  Sum_probs=175.7

Q ss_pred             HHhhccCccchhhHHHhhhh-HHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceee-EEe-ec
Q 022303           34 MIFSSLGFFDLVRCSAVCKS-WNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDI-DQW-KA  110 (299)
Q Consensus        34 ~i~~~~~h~~~v~~~~~~~~-~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~-~~~-~~  110 (299)
                      .++.+.+|.+.+..++++|- |..+|+                ...|..+|+|..  .- ++.       ... .++ .+
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAs----------------cg~Dk~vriw~~--~~-~~s-------~~ck~vld~~   59 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILAS----------------CGTDKAVRIWST--SS-GDS-------WTCKTVLDDG   59 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEe----------------ecCCceEEEEec--CC-CCc-------EEEEEecccc
Confidence            45566789998888999998 887887                446777888832  11 111       111 111 57


Q ss_pred             cccCeeEEEe-cCC-EEEEEeCCCcEEEEecC--CceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce-
Q 022303          111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLE--GYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR-  183 (299)
Q Consensus       111 h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~-  183 (299)
                      |+..|..++| |.+ +|++||.|.++.||.-.  +.+++.++++|+..+. ++|+++|++|+ ++.|++|.+|.+.... 
T Consensus        60 hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE  139 (312)
T KOG0645|consen   60 HKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE  139 (312)
T ss_pred             chheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc
Confidence            9999999999 666 99999999999999866  3478899999976665 99999999999 9999999999998543 


Q ss_pred             ----eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcC---CcceeeeccccCCceeEEEeCCC-CeEEEEeCCCc
Q 022303          184 ----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY---SRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS  255 (299)
Q Consensus       184 ----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~  255 (299)
                          .+++.|...+. .+.|+|....|+++++|++|++|+-.   ...+.+++.+|...|.+++|++. ..|++++.|++
T Consensus       140 fec~aVL~~HtqDVK-~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t  218 (312)
T KOG0645|consen  140 FECIAVLQEHTQDVK-HVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT  218 (312)
T ss_pred             EEEEeeecccccccc-EEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc
Confidence                45566665544 45899999999999999999999866   35688999999999999999998 89999999999


Q ss_pred             EEEEeCCCCceEEEeec-cCCCCcEEEEEccCCCCeEEeee
Q 022303          256 IAISGLSSDQRVATLRS-TDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       256 i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ++||-..+.     +.. |..  +++.++|. + ..+++++
T Consensus       219 v~Iw~~~~~-----~~~~~sr--~~Y~v~W~-~-~~IaS~g  250 (312)
T KOG0645|consen  219 VSIWRLYTD-----LSGMHSR--ALYDVPWD-N-GVIASGG  250 (312)
T ss_pred             eEeeeeccC-----cchhccc--ceEeeeec-c-cceEecc
Confidence            999997622     222 223  78888887 3 3455543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.92  E-value=1.4e-24  Score=177.34  Aligned_cols=266  Identities=12%  Similarity=0.079  Sum_probs=202.5

Q ss_pred             cCcHHHHHHHhhccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhc-CCCCCCCchhhhhhhhhhhccccceee
Q 022303           26 SLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLH-GFSNTSGSSMRLHLEELAMKHHRFALE   99 (299)
Q Consensus        26 ~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~l~   99 (299)
                      +.+.+.+.....|.+|...++..+++|.|.++|+     ++++|+.....-. +.... ...-+  +.++.++.+++.++
T Consensus        43 ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~-v~aG~--I~Di~Wd~ds~RI~  119 (603)
T KOG0318|consen   43 IRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQ-VLAGP--IKDISWDFDSKRIA  119 (603)
T ss_pred             EEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeee-ecccc--cccceeCCCCcEEE
Confidence            3344455567788899999999999999999999     6889987332111 11110 00001  12444445443332


Q ss_pred             -cCc--------------eeeEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEe
Q 022303          100 -EGR--------------IDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFD  160 (299)
Q Consensus       100 -~g~--------------~~~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~  160 (299)
                       .|.              ..+-.+.||...|+++.| |..  .++||+.|++|.+|+=...+...+++.|..-+ ++.++
T Consensus       120 avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRys  199 (603)
T KOG0318|consen  120 AVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYS  199 (603)
T ss_pred             EEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEEC
Confidence             222              125566899999999999 444  89999999999999977778778888776555 49999


Q ss_pred             cCCCEEE-EEcCCeEEEEecCCceee--ee---ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccC-
Q 022303          161 FDESKIV-GLIGTRICIWRRNGLRSV--FP---SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-  233 (299)
Q Consensus       161 ~~~~~l~-~~~d~~i~v~d~~~~~~~--~~---~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-  233 (299)
                      |||.+++ ++.||++.+||-.+++.+  +.   .|.+.+. .++|+|++..+++++.|.+++|||+.+.++++++.... 
T Consensus       200 PDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf-alsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~  278 (603)
T KOG0318|consen  200 PDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF-ALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST  278 (603)
T ss_pred             CCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE-EEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc
Confidence            9999999 999999999999988643  33   4555544 56999999999999999999999999999998886322 


Q ss_pred             --CceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          234 --APVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       234 --~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                        +.-..+.|. +..|++.+.+|.|.+++......++.+.+|..  .|+++..+|++++|++||.-+
T Consensus       279 v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK--~ITaLtv~~d~~~i~SgsyDG  342 (603)
T KOG0318|consen  279 VEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNK--SITALTVSPDGKTIYSGSYDG  342 (603)
T ss_pred             hhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheeccccc--ceeEEEEcCCCCEEEeeccCc
Confidence              222333454 45799999999999999999999999999999  999999999999999998754

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.2e-24  Score=181.04  Aligned_cols=229  Identities=14%  Similarity=0.150  Sum_probs=186.5

Q ss_pred             cCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEE
Q 022303           39 LGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQC  118 (299)
Q Consensus        39 ~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~  118 (299)
                      +.+.+.|.|+.++|.-..++.                .--.+.+.+|..            .....++.++-..-||.++
T Consensus        10 ~~rSdRVKsVd~HPtePw~la----------------~LynG~V~IWny------------etqtmVksfeV~~~PvRa~   61 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHPTEPWILA----------------ALYNGDVQIWNY------------ETQTMVKSFEVSEVPVRAA   61 (794)
T ss_pred             hccCCceeeeecCCCCceEEE----------------eeecCeeEEEec------------ccceeeeeeeecccchhhh
Confidence            347777888888887666654                001233344422            1112256667778899998


Q ss_pred             Ee-c-CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce---eeeeccCC
Q 022303          119 RM-K-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR---SVFPSREG  191 (299)
Q Consensus       119 ~~-~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~---~~~~~~~~  191 (299)
                      .| . .+.+++|+.|..|++|+..+++.+..|+.|..-+. ++.+|...+++ ++.|-.|++||-+..-   +++++|..
T Consensus        62 kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H  141 (794)
T KOG0276|consen   62 KFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEH  141 (794)
T ss_pred             eeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcce
Confidence            88 3 44999999999999999999999999998876555 99999999999 8888899999999874   55555554


Q ss_pred             ccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC---CeEEEEeCCCcEEEEeCCCCceE
Q 022303          192 TFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED---QLIISGSSLGSIAISGLSSDQRV  267 (299)
Q Consensus       192 ~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~  267 (299)
                      -+. .++++|.++. +++++-|++|++|.+.+..+..++.+|...|+++.+-+.   -+|++|+.|.+|+|||.++..|+
T Consensus       142 yVM-qv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV  220 (794)
T KOG0276|consen  142 YVM-QVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV  220 (794)
T ss_pred             EEE-EEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH
Confidence            433 3577777666 999999999999999999999999999999999999975   59999999999999999999999


Q ss_pred             EEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          268 ATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       268 ~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      +++++|..  .|..+.|+|.-..+++||--+
T Consensus       221 ~TLeGHt~--Nvs~v~fhp~lpiiisgsEDG  249 (794)
T KOG0276|consen  221 QTLEGHTN--NVSFVFFHPELPIIISGSEDG  249 (794)
T ss_pred             HHhhcccc--cceEEEecCCCcEEEEecCCc
Confidence            99999998  899999999999999998643

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=1.5e-24  Score=166.81  Aligned_cols=233  Identities=13%  Similarity=0.181  Sum_probs=170.9

Q ss_pred             ccCcHHHHHHHhhcc-CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhh--hhhccccceeec-
Q 022303           25 ESLNGDIICMIFSSL-GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEE--LAMKHHRFALEE-  100 (299)
Q Consensus        25 ~~~~~~~~~~i~~~~-~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~~l~~-  100 (299)
                      +....|..+.-..++ .|...++|.+|+++|.++|+                ...|..+|+....  +..+...+.... 
T Consensus        94 q~~s~e~~~yEt~ylt~HK~~cR~aafs~DG~lvAT----------------GsaD~SIKildvermlaks~~~em~~~~  157 (430)
T KOG0640|consen   94 QGSSPEPSEYETKYLTSHKSPCRAAAFSPDGSLVAT----------------GSADASIKILDVERMLAKSKPKEMISGD  157 (430)
T ss_pred             ccCCCCCcccceEEEeecccceeeeeeCCCCcEEEc----------------cCCcceEEEeehhhhhhhcchhhhccCC
Confidence            333344433333344 79999999999999999998                3345555554221  112211111111 


Q ss_pred             ---CceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCcee---EEEecCCCceeEEEEecCCCEEE-EEcC
Q 022303          101 ---GRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKC---VEEYSLPNAASLVDFDFDESKIV-GLIG  171 (299)
Q Consensus       101 ---g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~-~~~d  171 (299)
                         +...++++..|.++|+++.| |.+ .|++|+.|++|++||+..-..   .+.++.-.++.++.|+|.|.+++ |+..
T Consensus       158 ~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdH  237 (430)
T KOG0640|consen  158 TQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDH  237 (430)
T ss_pred             cccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCC
Confidence               12238899999999999999 544 999999999999999875432   33445556777899999999998 7777


Q ss_pred             CeEEEEecCCceeeeecc--CCcccee--eeeccCCCeEEEecCCCcEEEEEcCCcceeeecc-cc-CCceeEEEeCCC-
Q 022303          172 TRICIWRRNGLRSVFPSR--EGTFMKG--LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-MH-CAPVTSLSLSED-  244 (299)
Q Consensus       172 ~~i~v~d~~~~~~~~~~~--~~~~~~~--~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~-~~~i~~~~~~~~-  244 (299)
                      ..+++||+++-+.-....  .++...+  +..++.+...++|+.||.|++||--+++++.++. .| ...|.+..|..+ 
T Consensus       238 p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~  317 (430)
T KOG0640|consen  238 PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG  317 (430)
T ss_pred             CceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC
Confidence            899999999987443221  2222223  3455666779999999999999999999998886 44 457999999998 


Q ss_pred             CeEEEEeCCCcEEEEeCCCCceEEEeecc
Q 022303          245 QLIISGSSLGSIAISGLSSDQRVATLRST  273 (299)
Q Consensus       245 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  273 (299)
                      +++++.+.|..+++|.+.+++++.++.+.
T Consensus       318 kyiLsSG~DS~vkLWEi~t~R~l~~YtGA  346 (430)
T KOG0640|consen  318 KYILSSGKDSTVKLWEISTGRMLKEYTGA  346 (430)
T ss_pred             eEEeecCCcceeeeeeecCCceEEEEecC
Confidence            99999999999999999999988887654

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=1.5e-22  Score=175.55  Aligned_cols=193  Identities=11%  Similarity=0.120  Sum_probs=144.5

Q ss_pred             eeEEeeccccCeeEEEe-cC-C-EEEEEeCCCcEEEEecCCce--------eEEEecCCCcee-EEEEecCCCEE-E-EE
Q 022303          104 DIDQWKAHSVGVDQCRM-KR-G-LILTGVGDKVMRLWSLEGYK--------CVEEYSLPNAAS-LVDFDFDESKI-V-GL  169 (299)
Q Consensus       104 ~~~~~~~h~~~i~~~~~-~~-~-~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~l-~-~~  169 (299)
                      .+..+.+|.++|.++.| |+ + +|++|+.||+|++||+.++.        ++..+.+|...+ .++|+|++..+ + ++
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence            35677999999999999 43 3 99999999999999997642        334566676555 49999998765 5 78


Q ss_pred             cCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEE-----EeCCC
Q 022303          170 IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSL-----SLSED  244 (299)
Q Consensus       170 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~-----~~~~~  244 (299)
                      .|+.|++||+++++.............++|++++..|++++.|+.|++||+++++.+.++.+|.+.+...     .|+++
T Consensus       146 ~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d  225 (568)
T PTZ00420        146 FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD  225 (568)
T ss_pred             CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence            8999999999987644332222223356899999999999999999999999999998888888765432     34577


Q ss_pred             -CeEEEEeCCC----cEEEEeCCC-CceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          245 -QLIISGSSLG----SIAISGLSS-DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       245 -~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                       .+|++++.|+    .|+|||+++ ++++..+..+...+.+......++|.++++|+-
T Consensus       226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG  283 (568)
T PTZ00420        226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG  283 (568)
T ss_pred             CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence             8888887764    799999995 666766654443224444444567888888853

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.92  E-value=1.1e-24  Score=187.99  Aligned_cols=235  Identities=18%  Similarity=0.268  Sum_probs=192.4

Q ss_pred             CCCCcchhccCcHHHHHHHhh-ccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcccc
Q 022303           17 SSKPRATIESLNGDIICMIFS-SLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHR   95 (299)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~i~~-~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (299)
                      .+..+++|.+|+......+.. +.+|.+.|.++++..-++.+++                ...|.+.|+|.  +..+.  
T Consensus       223 ~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvs----------------gS~D~t~rvWd--~~sg~--  282 (537)
T KOG0274|consen  223 SGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVS----------------GSTDKTERVWD--CSTGE--  282 (537)
T ss_pred             ecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEE----------------EecCCcEEeEe--cCCCc--
Confidence            344678889999999988888 8899999999999875666765                44688889993  22222  


Q ss_pred             ceeecCceeeEEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCe
Q 022303           96 FALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTR  173 (299)
Q Consensus        96 ~~l~~g~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~  173 (299)
                              ..+++.+|++.|.++...+.++++|+.|.+|++|++.++.++..+.+|...+. +..+  +..++ ++.|++
T Consensus       283 --------C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~  352 (537)
T KOG0274|consen  283 --------CTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGT  352 (537)
T ss_pred             --------EEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCce
Confidence                    34566899999999999888999999999999999999999999997665554 7776  66777 999999


Q ss_pred             EEEEecCCceeeeeccCCccceeeeeccCC-CeEEEecCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCCCeEEEEe
Q 022303          174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSEDQLIISGS  251 (299)
Q Consensus       174 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~l~~~~  251 (299)
                      |++||+.+.+.. ....++...+.++..++ +.+++|+.|+.|++||+++. +++..+..|...+..+.+. +++|++++
T Consensus       353 v~VW~~~~~~cl-~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~-~~~Lvs~~  430 (537)
T KOG0274|consen  353 VKVWDPRTGKCL-KSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR-DNFLVSSS  430 (537)
T ss_pred             EEEEEhhhceee-eeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc-cceeEecc
Confidence            999999976532 22333444466777777 88999999999999999999 8999999999988776653 36899999


Q ss_pred             CCCcEEEEeCCCCceEEEeec-cCCCCcEEEEEcc
Q 022303          252 SLGSIAISGLSSDQRVATLRS-TDCTGHIICLMYP  285 (299)
Q Consensus       252 ~dg~i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s  285 (299)
                      .|++|++||..++++++++.+ +..  .|..+++.
T Consensus       431 aD~~Ik~WD~~~~~~~~~~~~~~~~--~v~~l~~~  463 (537)
T KOG0274|consen  431 ADGTIKLWDAEEGECLRTLEGRHVG--GVSALALG  463 (537)
T ss_pred             ccccEEEeecccCceeeeeccCCcc--cEEEeecC
Confidence            999999999999999999998 445  89998886

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=4.7e-24  Score=163.63  Aligned_cols=225  Identities=17%  Similarity=0.214  Sum_probs=171.5

Q ss_pred             CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEE
Q 022303           40 GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCR  119 (299)
Q Consensus        40 ~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~  119 (299)
                      ++.+.|..+.|++..+.|+.  ..|              |+++++|  ++........           -.|..++.+++
T Consensus        11 pP~d~IS~v~f~~~~~~LLv--ssW--------------DgslrlY--dv~~~~l~~~-----------~~~~~plL~c~   61 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLV--SSW--------------DGSLRLY--DVPANSLKLK-----------FKHGAPLLDCA   61 (323)
T ss_pred             CChhceeeEEEcCcCCcEEE--Eec--------------cCcEEEE--eccchhhhhh-----------eecCCceeeee
Confidence            56788999999988777663  123              5667777  3222222222           36899999999


Q ss_pred             ecCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceee
Q 022303          120 MKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGL  197 (299)
Q Consensus       120 ~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  197 (299)
                      |.+. .+++|+.||.|+.+|+.++.....-.+...+.++...+....++ |+.|++|++||.++.........+.  .+.
T Consensus        62 F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k--kVy  139 (323)
T KOG1036|consen   62 FADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK--KVY  139 (323)
T ss_pred             ccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc--eEE
Confidence            9555 99999999999999999988766555556666788888766666 9999999999999754332222222  467


Q ss_pred             eeccCCCeEEEecCCCcEEEEEcCCcce------------------------------------------------eeec
Q 022303          198 CMRYFDPEAVVGCEDGTARVFDMYSRKC------------------------------------------------SQII  229 (299)
Q Consensus       198 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------------------------------------------~~~~  229 (299)
                      +++-.++.|+.|..+..+.+||+++...                                                ...|
T Consensus       140 ~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaF  219 (323)
T KOG1036|consen  140 CMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAF  219 (323)
T ss_pred             EEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeE
Confidence            8888888899988999999999875210                                                0111


Q ss_pred             cccC---------CceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          230 RMHC---------APVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       230 ~~~~---------~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +.|.         .+|++|+|+|- +.|+||+.||.|.+||+.+.+.+..+.....  .|.+++|+.+|..||.++.+
T Consensus       220 kCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~--SI~slsfs~dG~~LAia~sy  295 (323)
T KOG1036|consen  220 KCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYET--SISSLSFSMDGSLLAIASSY  295 (323)
T ss_pred             EeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCC--ceEEEEeccCCCeEEEEech
Confidence            2232         38899999998 9999999999999999999998888877765  79999999999999999865

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1e-23  Score=170.72  Aligned_cols=190  Identities=17%  Similarity=0.200  Sum_probs=152.9

Q ss_pred             eEEeeccccCeeEEEe-c-CC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCCCEE-E-EEcCCeEEEEe
Q 022303          105 IDQWKAHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKI-V-GLIGTRICIWR  178 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l-~-~~~d~~i~v~d  178 (299)
                      ++.+++|+.+|..+.| + ++ .+++|+.|+.+++||+.+......+.+|+.-+ +.+++|....+ + |+.||.|++||
T Consensus       103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~D  182 (487)
T KOG0310|consen  103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWD  182 (487)
T ss_pred             HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence            3455899999999999 3 33 89999999999999999998766788886554 59999987754 4 99999999999


Q ss_pred             cCCc-eeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcce-eeeccccCCceeEEEeCCC-CeEEEEeCCCc
Q 022303          179 RNGL-RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED-QLIISGSSLGS  255 (299)
Q Consensus       179 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~  255 (299)
                      ++.. ..+.....+.....+.+-|.+..+++++. +.+++||+-+|.. +..+..|...|+|+.+..+ ..|++|+-|+.
T Consensus       183 tR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~  261 (487)
T KOG0310|consen  183 TRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH  261 (487)
T ss_pred             eccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc
Confidence            9976 34444333333334566677777887764 5899999996654 4444459999999999988 89999999999


Q ss_pred             EEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          256 IAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       256 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      +++||+.+.+.+..+.-..   +|.+++.+|+++.++.|--.+
T Consensus       262 VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnG  301 (487)
T KOG0310|consen  262 VKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNG  301 (487)
T ss_pred             eEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccc
Confidence            9999998889999997665   899999999999999886544

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=2.8e-25  Score=187.50  Aligned_cols=189  Identities=19%  Similarity=0.212  Sum_probs=166.9

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCc-eeEEEEecCCCEEE-EEcCCeEEEEecC
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIGTRICIWRRN  180 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~d~~i~v~d~~  180 (299)
                      +..|.+|..+|-++.| .++ +|++|+.+|+|++||++.++.++++.+|.. +..++|+|.+.+.+ ++.|..+++||.+
T Consensus        63 i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R  142 (825)
T KOG0267|consen   63 ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR  142 (825)
T ss_pred             hheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhh
Confidence            3446899999999999 444 999999999999999999999999998864 45599999999999 9999999999998


Q ss_pred             Cce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEE
Q 022303          181 GLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA  257 (299)
Q Consensus       181 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~  257 (299)
                      ...  ..+..+... ..++.+.|++.++++|++|..+++||...|+.+.+|..|...+..+.|+|. -++++|+.|++++
T Consensus       143 k~Gc~~~~~s~~~v-v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~  221 (825)
T KOG0267|consen  143 KKGCSHTYKSHTRV-VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR  221 (825)
T ss_pred             ccCceeeecCCcce-eEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceee
Confidence            543  555554433 447799999999999999999999999999999999999999999999998 7899999999999


Q ss_pred             EEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          258 ISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       258 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +||+++-+.+...+....  .|.+++|+|+++.+++|..
T Consensus       222 f~dletfe~I~s~~~~~~--~v~~~~fn~~~~~~~~G~q  258 (825)
T KOG0267|consen  222 FWDLETFEVISSGKPETD--GVRSLAFNPDGKIVLSGEQ  258 (825)
T ss_pred             eeccceeEEeeccCCccC--CceeeeecCCceeeecCch
Confidence            999999998888887766  8999999999999988754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.91  E-value=3.4e-23  Score=165.63  Aligned_cols=190  Identities=14%  Similarity=0.151  Sum_probs=165.0

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecC
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRN  180 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~  180 (299)
                      +.+|+||+..|+.+.+ ++. .+++++.|..|++|......+......|+..+. +..+|.+.+++ ++.|+...+.|++
T Consensus       254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~  333 (506)
T KOG0289|consen  254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS  333 (506)
T ss_pred             hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEcc
Confidence            5677999999999999 444 899999999999999988777777777766665 99999999999 9999999999999


Q ss_pred             CceeeeeccC---CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcE
Q 022303          181 GLRSVFPSRE---GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSI  256 (299)
Q Consensus       181 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i  256 (299)
                      ++........   +......+++|++-.+.+|..|+.+++||+.++..+..|.+|.++|..++|+.+ -+|++++.|+.|
T Consensus       334 ~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V  413 (506)
T KOG0289|consen  334 SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSV  413 (506)
T ss_pred             CCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeE
Confidence            8864332222   122335689999999999999999999999999999999999999999999998 899999999999


Q ss_pred             EEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          257 AISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ++||+|..+..+++...... ++.++.|++.|++|+.++
T Consensus       414 ~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g  451 (506)
T KOG0289|consen  414 KLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTYLGIAG  451 (506)
T ss_pred             EEEEehhhcccceeeccccc-cceeEEEcCCCCeEEeec
Confidence            99999999988888877655 799999999999999875

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=8.2e-24  Score=162.82  Aligned_cols=220  Identities=14%  Similarity=0.170  Sum_probs=167.4

Q ss_pred             HHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeecc
Q 022303           32 ICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAH  111 (299)
Q Consensus        32 ~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h  111 (299)
                      +..+|.+..|.+.++|+++  +|.++|+                ..+|.++++|..  ......          ..+-.|
T Consensus        33 l~~lF~~~aH~~sitavAV--s~~~~aS----------------GssDetI~IYDm--~k~~ql----------g~ll~H   82 (362)
T KOG0294|consen   33 LKPLFAFSAHAGSITALAV--SGPYVAS----------------GSSDETIHIYDM--RKRKQL----------GILLSH   82 (362)
T ss_pred             eeccccccccccceeEEEe--cceeEec----------------cCCCCcEEEEec--cchhhh----------cceecc
Confidence            4468889999999999988  4677887                558888999843  322222          223589


Q ss_pred             ccCeeEEEe-cCC---EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceee
Q 022303          112 SVGVDQCRM-KRG---LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSV  185 (299)
Q Consensus       112 ~~~i~~~~~-~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~  185 (299)
                      .+.|+++.| ++-   .|++|+.||.|.+|+....+++.+++.|...+. ++++|.+++.+ .+.|+.+++||+-+++..
T Consensus        83 agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a  162 (362)
T KOG0294|consen   83 AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA  162 (362)
T ss_pred             ccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccc
Confidence            999999998 333   899999999999999999999999999876666 99999999977 999999999999765422


Q ss_pred             eeccCCccce--------------------------------------eeeeccCC-CeEEEecCCCcEEEEEcCCccee
Q 022303          186 FPSREGTFMK--------------------------------------GLCMRYFD-PEAVVGCEDGTARVFDMYSRKCS  226 (299)
Q Consensus       186 ~~~~~~~~~~--------------------------------------~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~  226 (299)
                      +...-.....                                      +.|..+.. ..+++|++|+.|.+||..+..+.
T Consensus       163 ~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~  242 (362)
T KOG0294|consen  163 FVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPL  242 (362)
T ss_pred             eeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccc
Confidence            2211111111                                      22333332 33789999999999999999999


Q ss_pred             eeccccCCceeEEEeC--CC-CeEEEEeCCCcEEEEeCCCC-----ceEEEeeccCCCCcEEEEEc
Q 022303          227 QIIRMHCAPVTSLSLS--ED-QLIISGSSLGSIAISGLSSD-----QRVATLRSTDCTGHIICLMY  284 (299)
Q Consensus       227 ~~~~~~~~~i~~~~~~--~~-~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~i~~~~~  284 (299)
                      ..+.+|...|.++.+-  |+ .+|+++++||.|+|||++..     +++..+....   .++|+..
T Consensus       243 ~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~---RltCl~~  305 (362)
T KOG0294|consen  243 TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNV---RLTCLRV  305 (362)
T ss_pred             eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCC---ccceeee
Confidence            9999999999999854  45 79999999999999999876     3455554422   5666654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=5.1e-24  Score=164.06  Aligned_cols=190  Identities=17%  Similarity=0.255  Sum_probs=155.1

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCC
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNG  181 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~  181 (299)
                      ++.+.||...|+.+.. |-+ .+++++.|++|++||++..++...+.... ....+|+|+|-++| +...+.|++||++.
T Consensus        93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLyD~Rs  171 (311)
T KOG1446|consen   93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLYDLRS  171 (311)
T ss_pred             EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEEEecc
Confidence            7778999999999988 544 99999999999999999888877665432 33478999999999 66666999999985


Q ss_pred             ce----eeeecc--CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCc---eeEEEeCCC-CeEEEEe
Q 022303          182 LR----SVFPSR--EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP---VTSLSLSED-QLIISGS  251 (299)
Q Consensus       182 ~~----~~~~~~--~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---i~~~~~~~~-~~l~~~~  251 (299)
                      -.    ..+...  .......+.++++|+.++.+...+.+.+.|.-+|..+..+..+...   .....|.|| +++++|+
T Consensus       172 ~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs  251 (311)
T KOG1446|consen  172 FDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGS  251 (311)
T ss_pred             cCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEec
Confidence            42    333332  1222335789999999999999999999999999998888755432   257889999 9999999


Q ss_pred             CCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          252 SLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       252 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      .||+|.+|+++++..+..+++.... ++.++.|+|.-.++++++.
T Consensus       252 ~dg~i~vw~~~tg~~v~~~~~~~~~-~~~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  252 DDGTIHVWNLETGKKVAVLRGPNGG-PVSCVRFNPRYAMFVSASS  295 (311)
T ss_pred             CCCcEEEEEcCCCcEeeEecCCCCC-CccccccCCceeeeeecCc
Confidence            9999999999999999999986333 8999999999988888763

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=3e-24  Score=164.29  Aligned_cols=244  Identities=14%  Similarity=0.151  Sum_probs=190.0

Q ss_pred             CcchhccCcHHH--HHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccce
Q 022303           20 PRATIESLNGDI--ICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFA   97 (299)
Q Consensus        20 ~~~~~~~~~~~~--~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (299)
                      -+.+++.|..+-  ...-.....|.+.|.+++|+.++..+++                ..-|+..|+|  +|..++    
T Consensus        48 WD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~----------------g~~Dk~~k~w--DL~S~Q----  105 (347)
T KOG0647|consen   48 WDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFS----------------GGCDKQAKLW--DLASGQ----  105 (347)
T ss_pred             cCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEe----------------eccCCceEEE--EccCCC----
Confidence            466777777655  2222455579999999999999988886                3467788888  444443    


Q ss_pred             eecCceeeEEeeccccCeeEEEe-cC-C--EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCC
Q 022303           98 LEEGRIDIDQWKAHSVGVDQCRM-KR-G--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGT  172 (299)
Q Consensus        98 l~~g~~~~~~~~~h~~~i~~~~~-~~-~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~  172 (299)
                             +..+..|.++|.++.| +. +  .|+|||+|++|+.||.+...++.+++.++.+.+++.-  ...++ +..+.
T Consensus       106 -------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r  176 (347)
T KOG0647|consen  106 -------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAER  176 (347)
T ss_pred             -------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--CceeEEEecCC
Confidence                   2344689999999998 32 2  7899999999999999999999999999887776552  33455 99999


Q ss_pred             eEEEEecCCceeeeeccCCcc---ceeeeeccCCCeEEEecCCCcEEEEEcCCc--ceeeeccccC---------CceeE
Q 022303          173 RICIWRRNGLRSVFPSREGTF---MKGLCMRYFDPEAVVGCEDGTARVFDMYSR--KCSQIIRMHC---------APVTS  238 (299)
Q Consensus       173 ~i~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~---------~~i~~  238 (299)
                      .|.+|+++++...++......   ..+++...+.+..+.|+-.|.+.+..+..+  +.-..|+.|.         ..|++
T Consensus       177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs  256 (347)
T KOG0647|consen  177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS  256 (347)
T ss_pred             cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence            999999988765555544432   234566666666899999999999988876  3334555554         25889


Q ss_pred             EEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          239 LSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       239 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      |+|+|. ..|+|++.||+..+||-.....+.+.+.+..  +|++.+|+.+|.++|-+.-
T Consensus       257 i~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  257 IAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             eEeecccceEEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCCEEEEEee
Confidence            999999 9999999999999999988888888888887  9999999999999986643

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1.2e-23  Score=164.78  Aligned_cols=244  Identities=19%  Similarity=0.217  Sum_probs=179.3

Q ss_pred             hccCcHHHHHHHh------hccCccchhhHHHhhhhH-HHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccc
Q 022303           24 IESLNGDIICMIF------SSLGFFDLVRCSAVCKSW-NAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRF   96 (299)
Q Consensus        24 ~~~~~~~~~~~i~------~~~~h~~~v~~~~~~~~~-~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (299)
                      .+.|+..-+..+|      ++-+|.+.|.|++=+|.. ..+++                ..-|+.+++|  ++..-.   
T Consensus        42 ~RALNAtKleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aS----------------Gs~DG~VkiW--nlsqR~---  100 (433)
T KOG0268|consen   42 TRALNATKLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVAS----------------GSCDGEVKIW--NLSQRE---  100 (433)
T ss_pred             HHHhhhHHHHHHhhccchhhccccccccchhhcCcchhhhhhc----------------cccCceEEEE--ehhhhh---
Confidence            4456665555555      345899999999999887 67776                4577888888  322222   


Q ss_pred             eeecCceeeEEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCC---------------------------c-------
Q 022303           97 ALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEG---------------------------Y-------  142 (299)
Q Consensus        97 ~l~~g~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~---------------------------~-------  142 (299)
                             .+.++++|.+.|..+.+..+.+++++.|.+|+.|.++-                           |       
T Consensus       101 -------~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD  173 (433)
T KOG0268|consen  101 -------CIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWD  173 (433)
T ss_pred             -------hhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecc
Confidence                   24455899999999988778889999999998887431                           1       


Q ss_pred             ----eeEEEecCC-CceeEEEEecCCCEEE--EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcE
Q 022303          143 ----KCVEEYSLP-NAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTA  215 (299)
Q Consensus       143 ----~~~~~~~~~-~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i  215 (299)
                          .++..+... +.+.++.|+|....++  +..|++|.+||+++..-......+.....+||+|..-.+++|++|..+
T Consensus       174 ~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nl  253 (433)
T KOG0268|consen  174 EQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNL  253 (433)
T ss_pred             cccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccc
Confidence                122222222 2334578888776655  668999999999987533222222223356999966669999999999


Q ss_pred             EEEEcCCc-ceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022303          216 RVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       216 ~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      +.||++.- +++..+..|.+.|.++.|+|. +-+++||.|.+|+||..+.+..-..+...... .|.++.||.|.+|+++
T Consensus       254 Y~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq-~V~~Vk~S~Dskyi~S  332 (433)
T KOG0268|consen  254 YTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQ-HVFCVKYSMDSKYIIS  332 (433)
T ss_pred             eehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhh-eeeEEEEeccccEEEe
Confidence            99999864 567788899999999999998 88999999999999999877543333222222 7999999999999999


Q ss_pred             eec
Q 022303          294 LCF  296 (299)
Q Consensus       294 ~s~  296 (299)
                      ||-
T Consensus       333 GSd  335 (433)
T KOG0268|consen  333 GSD  335 (433)
T ss_pred             cCC
Confidence            985

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.91  E-value=3.4e-23  Score=159.32  Aligned_cols=194  Identities=14%  Similarity=0.193  Sum_probs=159.8

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCC------------c------eeEEEecCCCceeE-EEEecCC
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG------------Y------KCVEEYSLPNAASL-VDFDFDE  163 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~------------~------~~~~~~~~~~~~~~-~~~~~~~  163 (299)
                      ...+..|.+++.+.+| +++ ++++|+.|..|+|.|++.            +      -.++++..|...+. +.|+|..
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            5666899999999999 677 999999999999999861            1      13455555654454 9999999


Q ss_pred             CEEE-EEcCCeEEEEecCCce--eeeeccC-CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeec---cccCCce
Q 022303          164 SKIV-GLIGTRICIWRRNGLR--SVFPSRE-GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII---RMHCAPV  236 (299)
Q Consensus       164 ~~l~-~~~d~~i~v~d~~~~~--~~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~i  236 (299)
                      ..|+ ++.|++|++||+....  ..++... ......+.++|.+.+++.|.+...+++||+.+.++...-   ..|.+.|
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence            9999 9999999999998653  2232222 223346789999999999999999999999988765433   2788999


Q ss_pred             eEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          237 TSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       237 ~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      +++.+++. ++.++|+.||.|++||--+++|+.++...+++..|.+..|..+|+|++++++-+
T Consensus       265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS  327 (430)
T KOG0640|consen  265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS  327 (430)
T ss_pred             eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc
Confidence            99999998 999999999999999999999999998766656999999999999999988653

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=7.1e-24  Score=170.54  Aligned_cols=222  Identities=17%  Similarity=0.256  Sum_probs=170.0

Q ss_pred             CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEE
Q 022303           40 GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCR  119 (299)
Q Consensus        40 ~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~  119 (299)
                      +|...+.|++++++++++++                ...|..+.+|  +...-..          ++++++|.+.|.+++
T Consensus       200 ~h~keil~~avS~Dgkylat----------------gg~d~~v~Iw--~~~t~eh----------v~~~~ghr~~V~~L~  251 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLAT----------------GGRDRHVQIW--DCDTLEH----------VKVFKGHRGAVSSLA  251 (479)
T ss_pred             cccceeEEEEEcCCCcEEEe----------------cCCCceEEEe--cCcccch----------hhcccccccceeeee
Confidence            68888999999999999998                2233333445  3222222          444589999999999


Q ss_pred             ecCC--EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCc-eeeeeccCCccc
Q 022303          120 MKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGL-RSVFPSREGTFM  194 (299)
Q Consensus       120 ~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~-~~~~~~~~~~~~  194 (299)
                      |..+  .|++++.|++|++|+++....+.++.+|...+. +....-++.+. +..|.++++|++... +.++..+.+...
T Consensus       252 fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sid  331 (479)
T KOG0299|consen  252 FRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSID  331 (479)
T ss_pred             eecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCee
Confidence            9443  999999999999999998888877777765554 87777777776 889999999999655 466666655533


Q ss_pred             eeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc-cc-----------CCceeEEEeCCC-CeEEEEeCCCcEEEEeC
Q 022303          195 KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-MH-----------CAPVTSLSLSED-QLIISGSSLGSIAISGL  261 (299)
Q Consensus       195 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~-----------~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~  261 (299)
                       ++++. ++..+++|+.+|.|.+|++...+++.+.. .|           +..|++++..|. .++++|+.+|.|++|-+
T Consensus       332 -cv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i  409 (479)
T KOG0299|consen  332 -CVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI  409 (479)
T ss_pred             -eEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence             33332 34459999999999999999888876654 11           237999999999 99999999999999999


Q ss_pred             CCC----ceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          262 SSD----QRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       262 ~~~----~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      ..|    +++..+. -.+  .|++++|+++|+.+++|
T Consensus       410 ~~g~r~i~~l~~ls-~~G--fVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  410 EDGLRAINLLYSLS-LVG--FVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             cCCccccceeeecc-ccc--EEEEEEEccCCCEEEEe
Confidence            887    3445554 223  89999999999988776

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.90  E-value=1.1e-22  Score=162.74  Aligned_cols=256  Identities=13%  Similarity=0.132  Sum_probs=207.6

Q ss_pred             CCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhh
Q 022303           12 PPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAM   91 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~   91 (299)
                      +.+.+.++.+...-.++.+....+..+.||.-.|+.+.++|+...+++                ...|..+++|  +...
T Consensus       231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~----------------aSad~~i~vw--s~~~  292 (506)
T KOG0289|consen  231 SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVIT----------------ASADEIIRVW--SVPL  292 (506)
T ss_pred             CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheee----------------cCCcceEEee--cccc
Confidence            466777888888888999998888888999999999999999999887                4466777888  3333


Q ss_pred             ccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCc---eeEEEEecCCCEE
Q 022303           92 KHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA---ASLVDFDFDESKI  166 (299)
Q Consensus        92 ~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~l  166 (299)
                      +....          ....|.++|+.+.. +.+ ||++++.||+..+.|++++..+........   ..+.+|+|||.++
T Consensus       293 ~s~~~----------~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLif  362 (506)
T KOG0289|consen  293 SSEPT----------SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIF  362 (506)
T ss_pred             ccCcc----------ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEE
Confidence            33222          23789999999988 555 999999999999999999998877765422   3459999999999


Q ss_pred             E-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc-cCCceeEEEeC
Q 022303          167 V-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-HCAPVTSLSLS  242 (299)
Q Consensus       167 ~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~  242 (299)
                      . |+.|+.+++||+..+.  ..|.+|.+.+. .++|+-+|.+++++.+|+.|++||++.-+...++.. ....+.++.|.
T Consensus       363 gtgt~d~~vkiwdlks~~~~a~Fpght~~vk-~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD  441 (506)
T KOG0289|consen  363 GTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK-AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFD  441 (506)
T ss_pred             eccCCCceEEEEEcCCccccccCCCCCCcee-EEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEc
Confidence            9 9999999999998775  56778777766 458888898999999999999999998777776652 23469999999


Q ss_pred             CC-CeEEEEeCCCcEEEEeCCC--CceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          243 ED-QLIISGSSLGSIAISGLSS--DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       243 ~~-~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      +. .+|+.++.|=.|++++-.+  -.++..+..|.+  ..+++.|....++++++|+..
T Consensus       442 ~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg--~st~v~Fg~~aq~l~s~smd~  498 (506)
T KOG0289|consen  442 QSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSG--LSTGVRFGEHAQYLASTSMDA  498 (506)
T ss_pred             CCCCeEEeecceeEEEEEecccccceeeehhhhccc--ccceeeecccceEEeeccchh
Confidence            88 8999998777777777443  456777777776  789999999999999999753

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.90  E-value=4.6e-22  Score=155.95  Aligned_cols=191  Identities=15%  Similarity=0.205  Sum_probs=163.8

Q ss_pred             eeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEe
Q 022303          103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWR  178 (299)
Q Consensus       103 ~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d  178 (299)
                      ..+.+|..|+++|.++.. |+. +++||+.|....+|++.++.....+.+|+..+ ++.|+.++.+|+ |..+|.|.||+
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence            337788999999999999 555 99999999999999999999888888886554 599999999999 99999999999


Q ss_pred             cCCceeeeecc--CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCc
Q 022303          179 RNGLRSVFPSR--EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS  255 (299)
Q Consensus       179 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~  255 (299)
                      ..++.......  -....+ ++|+|....|++|+.||.+-+|.+.++...+.+.+|..++++=.|.|+ +.++++..||+
T Consensus       135 ~stg~~~~~~~~e~~dieW-l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt  213 (399)
T KOG0296|consen  135 VSTGGEQWKLDQEVEDIEW-LKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT  213 (399)
T ss_pred             cccCceEEEeecccCceEE-EEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence            99886433332  222332 589998888999999999999999998888899999999999999999 99999999999


Q ss_pred             EEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          256 IAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       256 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      |++|++.+++++..+...... +..++.++..+..++.|+
T Consensus       214 i~~Wn~ktg~p~~~~~~~e~~-~~~~~~~~~~~~~~~~g~  252 (399)
T KOG0296|consen  214 IIVWNPKTGQPLHKITQAEGL-ELPCISLNLAGSTLTKGN  252 (399)
T ss_pred             EEEEecCCCceeEEecccccC-cCCccccccccceeEecc
Confidence            999999999999999865543 677888888777777665

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=9.9e-24  Score=176.36  Aligned_cols=223  Identities=13%  Similarity=0.110  Sum_probs=176.7

Q ss_pred             cchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeec-cccCeeEEEe
Q 022303           42 FDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKA-HSVGVDQCRM  120 (299)
Q Consensus        42 ~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-h~~~i~~~~~  120 (299)
                      .+.|+++.++++|.+|+.                ...++.+.+|..  .....          ++.+.+ |...|-+++|
T Consensus       217 ~~~vtSv~ws~~G~~Lav----------------G~~~g~v~iwD~--~~~k~----------~~~~~~~h~~rvg~laW  268 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAV----------------GTSDGTVQIWDV--KEQKK----------TRTLRGSHASRVGSLAW  268 (484)
T ss_pred             CCceEEEEECCCCCEEEE----------------eecCCeEEEEeh--hhccc----------cccccCCcCceeEEEec
Confidence            566667777777777664                224455555521  11111          233356 9999999999


Q ss_pred             cCCEEEEEeCCCcEEEEecCCceeEEE-ecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCccce
Q 022303          121 KRGLILTGVGDKVMRLWSLEGYKCVEE-YSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFMK  195 (299)
Q Consensus       121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~  195 (299)
                      ....+.+|+.|+.|..+|+...+.... +.+|...++ +.|++++.+++ |+.|+.+.|||.....  ..+..|.+.+. 
T Consensus       269 ~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK-  347 (484)
T KOG0305|consen  269 NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK-  347 (484)
T ss_pred             cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeee-
Confidence            988999999999999999998776554 778888888 99999999999 9999999999996543  55666666654 


Q ss_pred             eeeeccCCCe-EEEe--cCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEE--eCCCcEEEEeCCCCceEEE
Q 022303          196 GLCMRYFDPE-AVVG--CEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG--SSLGSIAISGLSSDQRVAT  269 (299)
Q Consensus       196 ~~~~~~~~~~-l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~--~~dg~i~iwd~~~~~~~~~  269 (299)
                      +++|+|.... ||+|  +.|+.|++||..+++.+..+.. ...|.+|.|++. +-|+++  ..++.|.||+..+.+.+..
T Consensus       348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~  426 (484)
T KOG0305|consen  348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAE  426 (484)
T ss_pred             EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeee
Confidence            6789988777 6665  4699999999999999988854 567999999998 545443  3578999999999999999


Q ss_pred             eeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          270 LRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       270 ~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +.+|..  .|..++++|||..+++|+.
T Consensus       427 l~gH~~--RVl~la~SPdg~~i~t~a~  451 (484)
T KOG0305|consen  427 LLGHTS--RVLYLALSPDGETIVTGAA  451 (484)
T ss_pred             ecCCcc--eeEEEEECCCCCEEEEecc
Confidence            999999  8999999999999999874

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.90  E-value=6.6e-22  Score=149.19  Aligned_cols=187  Identities=17%  Similarity=0.181  Sum_probs=161.0

Q ss_pred             eeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce
Q 022303          108 WKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR  183 (299)
Q Consensus       108 ~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~  183 (299)
                      ++||.-+++.+.+ .++ +|++++.|.+..+|-..+|+.+.++.+|...+. ++.+.+.+.++ ++.|.++++||+.+++
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk   85 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK   85 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence            4799999999999 444 999999999999999989999999999987665 99999999999 9999999999999998


Q ss_pred             eeeeccCCccceeeeeccCCCeEEEe-----cCCCcEEEEEcC-------CcceeeeccccCCceeEEEeCCC-CeEEEE
Q 022303          184 SVFPSREGTFMKGLCMRYFDPEAVVG-----CEDGTARVFDMY-------SRKCSQIIRMHCAPVTSLSLSED-QLIISG  250 (299)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~l~s~-----~~d~~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~  250 (299)
                      .......+.....+.|++.+..++..     +..+.|.++|++       ..++...+..+...++.+.|.|- ++|++|
T Consensus        86 ~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G  165 (327)
T KOG0643|consen   86 QLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG  165 (327)
T ss_pred             EEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe
Confidence            77776666666677899999885544     345679999998       34556677778899999999998 999999


Q ss_pred             eCCCcEEEEeCCCCc-eEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          251 SSLGSIAISGLSSDQ-RVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       251 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      .+||.|.+||+++|+ .+...+.|..  .|+.|.++||..+++++|-
T Consensus       166 he~G~is~~da~~g~~~v~s~~~h~~--~Ind~q~s~d~T~FiT~s~  210 (327)
T KOG0643|consen  166 HEDGSISIYDARTGKELVDSDEEHSS--KINDLQFSRDRTYFITGSK  210 (327)
T ss_pred             cCCCcEEEEEcccCceeeechhhhcc--ccccccccCCcceEEeccc
Confidence            999999999999985 4556567776  8999999999999999984

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=5.8e-23  Score=152.97  Aligned_cols=228  Identities=12%  Similarity=0.072  Sum_probs=170.5

Q ss_pred             CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEE
Q 022303           40 GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCR  119 (299)
Q Consensus        40 ~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~  119 (299)
                      .|.+.|..+...-++..|||                ..+|.++|++-.  +.+..       ...+.+|.||.+||+.+.
T Consensus         9 ~H~D~IHda~lDyygkrlAT----------------csSD~tVkIf~v--~~n~~-------s~ll~~L~Gh~GPVwqv~   63 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLAT----------------CSSDGTVKIFEV--RNNGQ-------SKLLAELTGHSGPVWKVA   63 (299)
T ss_pred             hhhhhhhHhhhhhhcceeee----------------ecCCccEEEEEE--cCCCC-------ceeeeEecCCCCCeeEEe
Confidence            69999999999999999998                558899998822  22111       133667899999999999


Q ss_pred             e--c-CC-EEEEEeCCCcEEEEecCCceeEE--EecCCCce-eEEEEecCC--CEEE-EEcCCeEEEEecCCc-----ee
Q 022303          120 M--K-RG-LILTGVGDKVMRLWSLEGYKCVE--EYSLPNAA-SLVDFDFDE--SKIV-GLIGTRICIWRRNGL-----RS  184 (299)
Q Consensus       120 ~--~-~~-~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~-~~~~~~~~~--~~l~-~~~d~~i~v~d~~~~-----~~  184 (299)
                      |  | -+ +|++++.||.|.||.-.+++..+  ....|+.. .+++|.|.+  -.|+ ++.||.|.+.+.+..     ..
T Consensus        64 wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k  143 (299)
T KOG1332|consen   64 WAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK  143 (299)
T ss_pred             ecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh
Confidence            9  2 23 99999999999999988885443  33455544 448887754  4566 999999999998765     24


Q ss_pred             eeeccCCccceeeeeccC---C-----------CeEEEecCCCcEEEEEcCCcc--eeeeccccCCceeEEEeCCC----
Q 022303          185 VFPSREGTFMKGLCMRYF---D-----------PEAVVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSED----  244 (299)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~---~-----------~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~----  244 (299)
                      +...|.-... .++|.|.   +           ..|++|+.|+.|+||+..+++  ..+.+.+|.+.|..++|.|.    
T Consensus       144 i~~aH~~Gvn-sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~  222 (299)
T KOG1332|consen  144 IVFAHEIGVN-SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLP  222 (299)
T ss_pred             hhhccccccc-eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCC
Confidence            4555554444 3466665   2           239999999999999988753  34457899999999999985    


Q ss_pred             -CeEEEEeCCCcEEEEeCCCC-c-e-EEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          245 -QLIISGSSLGSIAISGLSSD-Q-R-VATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       245 -~~l~~~~~dg~i~iwd~~~~-~-~-~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                       .+||+++.||++.||-.+.. + - ...++....  .++.++||+.|..|+.++
T Consensus       223 ~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~--~~w~vSWS~sGn~LaVs~  275 (299)
T KOG1332|consen  223 KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPD--VVWRVSWSLSGNILAVSG  275 (299)
T ss_pred             ceeeEEecCCCcEEEEEecCccCcccccccccCCc--ceEEEEEeccccEEEEec
Confidence             47999999999999987632 1 1 112222233  799999999999999765

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.90  E-value=1.1e-23  Score=171.87  Aligned_cols=254  Identities=16%  Similarity=0.138  Sum_probs=180.3

Q ss_pred             hccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhh---h-cCCCCC-CCchhhhhhhhhhhccccce--eecCcee
Q 022303           37 SSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCK---L-HGFSNT-SGSSMRLHLEELAMKHHRFA--LEEGRID  104 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~---~-~~~~~~-~d~~~~~~~~~~~~~~~~~~--l~~g~~~  104 (299)
                      .+.+|...|.++++.|.|..+++     +++.|+..--.   . ++.+.| +.+.    +.++.+++.+..  ...|...
T Consensus       162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~----i~sl~ys~Tg~~iLvvsg~aq  237 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQ----INSLQYSVTGDQILVVSGSAQ  237 (641)
T ss_pred             eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccc----cceeeecCCCCeEEEEecCcc
Confidence            45578889999999999999998     67788771111   1 123333 1121    123334443311  1122222


Q ss_pred             -----------------------eEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCcee-EEEec----C--C
Q 022303          105 -----------------------IDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKC-VEEYS----L--P  151 (299)
Q Consensus       105 -----------------------~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~-~~~~~----~--~  151 (299)
                                             +..-+||...++|.+| |.+  .++|++.||++++||+...+. ...+.    .  .
T Consensus       238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R  317 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR  317 (641)
T ss_pred             eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence                                   2233899999999999 544  899999999999999986542 23332    1  1


Q ss_pred             CceeEEEEecCCCEEE-EEcCCeEEEEecCCce-----eeeeccCC-ccceeeeeccCCCeEEEecCCCcEEEEEcCCcc
Q 022303          152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLR-----SVFPSREG-TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK  224 (299)
Q Consensus       152 ~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  224 (299)
                      -.+..++|+++++.|+ |+.||+|.+|+..+..     .+...|.. ....++.|++++++|++-+.|+++++||+++.+
T Consensus       318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence            2345599999999999 9999999999986432     33344443 233467899999999999999999999999753


Q ss_pred             -eeeeccc--cCCceeEEEeCCC-CeEEEEeC------CCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          225 -CSQIIRM--HCAPVTSLSLSED-QLIISGSS------LGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       225 -~~~~~~~--~~~~i~~~~~~~~-~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                       ++....+  ...+-+.++|+|+ ++|++|+.      .|.+.+||..+.+.++++.....  .|..+.|+|.=+.+++|
T Consensus       398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a--Svv~~~WhpkLNQi~~g  475 (641)
T KOG0772|consen  398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA--SVVRCLWHPKLNQIFAG  475 (641)
T ss_pred             cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc--eEEEEeecchhhheeee
Confidence             4444432  2345678899999 88999865      56899999999999999987766  89999999987777776


Q ss_pred             ec
Q 022303          295 CF  296 (299)
Q Consensus       295 s~  296 (299)
                      +-
T Consensus       476 sg  477 (641)
T KOG0772|consen  476 SG  477 (641)
T ss_pred             cC
Confidence            64

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.90  E-value=1.1e-23  Score=163.04  Aligned_cols=177  Identities=19%  Similarity=0.301  Sum_probs=148.4

Q ss_pred             ccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEec---------CCCceeEEEEecCCCEEE-EEcCCeEEEE
Q 022303          110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS---------LPNAASLVDFDFDESKIV-GLIGTRICIW  177 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~-~~~d~~i~v~  177 (299)
                      +..+-+-|..| |++ +|++|+.||.|.+||..+|+....++         ....+.+++|+.|...++ |+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            44556777788 777 99999999999999999998765443         234566799999999999 9999999999


Q ss_pred             ecCCceee--ee-ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCC
Q 022303          178 RRNGLRSV--FP-SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL  253 (299)
Q Consensus       178 d~~~~~~~--~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d  253 (299)
                      .+.++.+.  +. .|...+. ++.|+.++..+++++.|.++++.-+.+|+++.++++|...|+...|.++ ..+++++.|
T Consensus       291 ri~tG~ClRrFdrAHtkGvt-~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD  369 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVT-CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD  369 (508)
T ss_pred             EEecchHHHHhhhhhccCee-EEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence            99998743  33 3333332 5677778888999999999999999999999999999999999999999 999999999


Q ss_pred             CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCC
Q 022303          254 GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQF  287 (299)
Q Consensus       254 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  287 (299)
                      |+|++|+..+.+|+.+++......+|.++..-|.
T Consensus       370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK  403 (508)
T KOG0275|consen  370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK  403 (508)
T ss_pred             ccEEEecCcchhhhhhccCCCCcccceeEEEcCC
Confidence            9999999999999999986654347888877764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=2e-23  Score=174.60  Aligned_cols=242  Identities=17%  Similarity=0.219  Sum_probs=189.2

Q ss_pred             CCCCCCcchhccCcHHHHH------HHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhh
Q 022303           15 KRSSKPRATIESLNGDIIC------MIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEE   88 (299)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~------~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~   88 (299)
                      ...++.+..|+.|+.....      .+.++..|.+.|+.++.+-+++-+++                ...|.++|+|...
T Consensus        40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS----------------~SsDtTVK~W~~~  103 (735)
T KOG0308|consen   40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLIS----------------ASSDTTVKVWNAH  103 (735)
T ss_pred             EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEE----------------ecCCceEEEeecc
Confidence            4577889999999854332      47888999999999999999988876                4578888888431


Q ss_pred             hhhccccceeecCceeeEEeeccccCeeEEEe--cCC-EEEEEeCCCcEEEEecCCc--eeEEEec---------CC-Cc
Q 022303           89 LAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM--KRG-LILTGVGDKVMRLWSLEGY--KCVEEYS---------LP-NA  153 (299)
Q Consensus        89 ~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~--~~~-~l~s~~~dg~i~iwd~~~~--~~~~~~~---------~~-~~  153 (299)
                                ..+.....++..|.+.|.|+++  +++ ++++|+-|+.|.+||++++  +.+.++.         ++ .+
T Consensus       104 ----------~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s  173 (735)
T KOG0308|consen  104 ----------KDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS  173 (735)
T ss_pred             ----------cCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence                      1112446677899999999998  344 9999999999999999987  3333322         23 45


Q ss_pred             eeEEEEecCCCEEE-EEcCCeEEEEecCCceee--eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc
Q 022303          154 ASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR  230 (299)
Q Consensus       154 ~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  230 (299)
                      +++++.++.+..++ |+.++.+++||.++.+.+  +.+|...+. ++-++.++..+++++.||+|++||+...+++.++.
T Consensus       174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr-~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~  252 (735)
T KOG0308|consen  174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR-VLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI  252 (735)
T ss_pred             eeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceE-EEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence            56699999998888 999999999999988644  445555443 56788899999999999999999999999999999


Q ss_pred             ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEcc
Q 022303          231 MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYP  285 (299)
Q Consensus       231 ~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  285 (299)
                      .|...|+++..+|+ ..+.+|+.||.|..=|+++......+.....  +|..+..+
T Consensus       253 vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da--Pv~~l~~~  306 (735)
T KOG0308|consen  253 VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA--PVLKLHLH  306 (735)
T ss_pred             eccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCC--chhhhhhc
Confidence            99999999999999 9999999999999999988433222222222  45555444

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=5.7e-22  Score=146.38  Aligned_cols=239  Identities=15%  Similarity=0.233  Sum_probs=173.2

Q ss_pred             ccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcc-ccceeec--CceeeEEeeccccC
Q 022303           38 SLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKH-HRFALEE--GRIDIDQWKAHSVG  114 (299)
Q Consensus        38 ~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~l~~--g~~~~~~~~~h~~~  114 (299)
                      .+.-...|++++|.|.+.+.+.                .....+.|+.-...-..+ ....-+.  .....+.-+.|.+.
T Consensus        28 ~l~dsqairav~fhp~g~lyav----------------gsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgs   91 (350)
T KOG0641|consen   28 ILEDSQAIRAVAFHPAGGLYAV----------------GSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGS   91 (350)
T ss_pred             EecchhheeeEEecCCCceEEe----------------ccCCceEEEEccccccCcccccccccCCCeEEeeeccccCcc
Confidence            3455567889999999988775                222333444322100001 0000011  11114455789999


Q ss_pred             eeEEEe-cCC-EEEEEeCCCcEEEEecCCceeE-----EEecCCCceeE-EEEecC----CCEEE--EEcCCeEEEEecC
Q 022303          115 VDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCV-----EEYSLPNAASL-VDFDFD----ESKIV--GLIGTRICIWRRN  180 (299)
Q Consensus       115 i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~-~~~~~~----~~~l~--~~~d~~i~v~d~~  180 (299)
                      |.|.+| +++ ++++|+.|.+|++.-.+...+.     ..+.-|+..+. ++|-.+    +.+++  +..|-.|++-|..
T Consensus        92 iyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~  171 (350)
T KOG0641|consen   92 IYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG  171 (350)
T ss_pred             EEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC
Confidence            999999 666 9999999999999876543322     24555666665 888432    34555  4556688888887


Q ss_pred             Cce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc-------cCCceeEEEeCCC-CeEEEE
Q 022303          181 GLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-------HCAPVTSLSLSED-QLIISG  250 (299)
Q Consensus       181 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~~~~-~~l~~~  250 (299)
                      +++  ..+..|.+++...  .+.++-++++|++|.+|++||++-..++.++..       ....|.++++.|. ++|++|
T Consensus       172 ~g~~~~a~sghtghilal--yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg  249 (350)
T KOG0641|consen  172 RGQGFHALSGHTGHILAL--YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG  249 (350)
T ss_pred             CCCcceeecCCcccEEEE--EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeec
Confidence            664  6777888886543  345577799999999999999998888777641       2367999999999 999999


Q ss_pred             eCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          251 SSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       251 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ..|.+-.+||++.++.++.+..|..  .|+++.|+|.-.||++||+
T Consensus       250 ~~dssc~lydirg~r~iq~f~phsa--dir~vrfsp~a~yllt~sy  293 (350)
T KOG0641|consen  250 HADSSCMLYDIRGGRMIQRFHPHSA--DIRCVRFSPGAHYLLTCSY  293 (350)
T ss_pred             cCCCceEEEEeeCCceeeeeCCCcc--ceeEEEeCCCceEEEEecc
Confidence            9999999999999999999999988  9999999999999999986

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.90  E-value=5.2e-23  Score=159.32  Aligned_cols=256  Identities=14%  Similarity=0.126  Sum_probs=204.7

Q ss_pred             CCCCCCCCCCcchhccCcHHHHH--HHhh------ccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchh
Q 022303           11 PPPKKRSSKPRATIESLNGDIIC--MIFS------SLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSM   82 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~--~i~~------~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~   82 (299)
                      +..-..++..+-.|..|+.-+++  +-++      +.-|.+.|.|+.|+++...+|+                ...|+.+
T Consensus       224 DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAs----------------GsqDGkI  287 (508)
T KOG0275|consen  224 DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLAS----------------GSQDGKI  287 (508)
T ss_pred             CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhc----------------cCcCCcE
Confidence            34444556678889999977665  2222      3358899999999999999998                5578888


Q ss_pred             hhhhhhhhhccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEE
Q 022303           83 RLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDF  159 (299)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~  159 (299)
                      |+|  .+..+.+.+.+.         ++|+..|+|+.| .++ .+++++.|.++++.-+.+|+++..+++|..-+. ..|
T Consensus       288 KvW--ri~tG~ClRrFd---------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f  356 (508)
T KOG0275|consen  288 KVW--RIETGQCLRRFD---------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF  356 (508)
T ss_pred             EEE--EEecchHHHHhh---------hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEE
Confidence            998  556666655553         489999999999 455 999999999999999999999999999987776 999


Q ss_pred             ecCCCEEE-EEcCCeEEEEecCCcee--eeeccC--CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc--
Q 022303          160 DFDESKIV-GLIGTRICIWRRNGLRS--VFPSRE--GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH--  232 (299)
Q Consensus       160 ~~~~~~l~-~~~d~~i~v~d~~~~~~--~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--  232 (299)
                      .++|..++ ++.||+|++|+..+.++  .+....  -.+..++-+..+.+.++.+...+++.+-++. |+.++.+...  
T Consensus       357 t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkR  435 (508)
T KOG0275|consen  357 TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKR  435 (508)
T ss_pred             cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCc
Confidence            99999999 99999999999988763  333322  2233344444445559999999999999987 8888888632  


Q ss_pred             -CCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          233 -CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       233 -~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                       .+...+...+|. .++.+.++|+.++.|.+.+|++.+++..|+.  -+..++-+|..+.||+=+-
T Consensus       436 EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHPHqNllAsYsE  499 (508)
T KOG0275|consen  436 EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHPHQNLLASYSE  499 (508)
T ss_pred             cCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCcccchhhhhcc
Confidence             234556667888 9999999999999999999999999999988  8999999999988887554

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.9e-22  Score=155.77  Aligned_cols=253  Identities=13%  Similarity=0.102  Sum_probs=174.1

Q ss_pred             HhhccCccchhhHHHhhhhHHHHhh-----hhhHHHH--HHhhhc---CCCCCCCchhhhhhhhhhhccccceee---cC
Q 022303           35 IFSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQL--LYCKLH---GFSNTSGSSMRLHLEELAMKHHRFALE---EG  101 (299)
Q Consensus        35 i~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~--~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~l~---~g  101 (299)
                      +-.+.+|.+.|+|++|+.+|+++++     ++++|+.  +..+.+   +...+.|+.-++     .|.|+-+.+.   ..
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V-----~FapDc~s~vv~~~~  153 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRV-----VFAPDCKSVVVSVKR  153 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEE-----EECCCcceEEEEEcc
Confidence            3455699999999999999999999     6778887  334433   222223332222     2233322111   11


Q ss_pred             ceeeEEe-----------------------eccccCeeEEEecCC--EEEEEeCCCcEEEEecCCceeEEEecCCCceeE
Q 022303          102 RIDIDQW-----------------------KAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL  156 (299)
Q Consensus       102 ~~~~~~~-----------------------~~h~~~i~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  156 (299)
                      +..+..|                       +.|...|..+-..++  +|++++.|..|.+|++. |+.+..+........
T Consensus       154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~  232 (420)
T KOG2096|consen  154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNY  232 (420)
T ss_pred             CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccc
Confidence            1111111                       345555555555444  99999999999999999 999988886544444


Q ss_pred             -EEEecCCCEEE-EEcCCeEEEEecCC---ce-------eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc-
Q 022303          157 -VDFDFDESKIV-GLIGTRICIWRRNG---LR-------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-  223 (299)
Q Consensus       157 -~~~~~~~~~l~-~~~d~~i~v~d~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-  223 (299)
                       .+++|+|++++ ++.-..|++|.+--   +.       ..+.+|...+. ..||++++..+++.+.||++++||.+-. 
T Consensus       233 ~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~-~~aFsn~S~r~vtvSkDG~wriwdtdVrY  311 (420)
T KOG2096|consen  233 DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVL-AAAFSNSSTRAVTVSKDGKWRIWDTDVRY  311 (420)
T ss_pred             ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhee-eeeeCCCcceeEEEecCCcEEEeeccceE
Confidence             89999999999 88888999998731   11       23345554444 3588888888999999999999997631 


Q ss_pred             ------ceeeecc----ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEE
Q 022303          224 ------KCSQIIR----MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLF  292 (299)
Q Consensus       224 ------~~~~~~~----~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  292 (299)
                            +.+.+..    ...+....++++|+ +.||. +....|+++..++|+...+++..++. .|.+++|+++|++++
T Consensus       312 ~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~-~Is~is~~~~g~~~a  389 (420)
T KOG2096|consen  312 EAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV-SFGSDLKVFASEDGKDYPELEDIHST-TISSISYSSDGKYIA  389 (420)
T ss_pred             ecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe-ecCCceEEEEcccCccchhHHHhhcC-ceeeEEecCCCcEEe
Confidence                  2222221    22334458999999 65554 45678999999999988888754444 899999999999999


Q ss_pred             eeec
Q 022303          293 FLCF  296 (299)
Q Consensus       293 s~s~  296 (299)
                      +++-
T Consensus       390 tcGd  393 (420)
T KOG2096|consen  390 TCGD  393 (420)
T ss_pred             eecc
Confidence            9874

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=4e-22  Score=149.33  Aligned_cols=182  Identities=14%  Similarity=0.191  Sum_probs=144.3

Q ss_pred             cccCeeEEEec---CCEEEEEeCCCcEEEEecC-CceeEEEecCCCc-eeEEEEecCCCE-EE-EEcCCeEEEEecCCce
Q 022303          111 HSVGVDQCRMK---RGLILTGVGDKVMRLWSLE-GYKCVEEYSLPNA-ASLVDFDFDESK-IV-GLIGTRICIWRRNGLR  183 (299)
Q Consensus       111 h~~~i~~~~~~---~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~-~~~~~~~~~~~~-l~-~~~d~~i~v~d~~~~~  183 (299)
                      -++.+..++|.   ++.+++++.||++++||.. ..+++..++.|.. +.++.+++..+. ++ ++.|++|++|+...+.
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            35678888883   2299999999999999964 3457888887754 556999886554 44 8999999999998775


Q ss_pred             --eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCC-C-CeEEEEeCCCcEEE
Q 022303          184 --SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-D-QLIISGSSLGSIAI  258 (299)
Q Consensus       184 --~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg~i~i  258 (299)
                        ..+.++...+. ...++|..+. +++++.|+.+++||++....-..+..|...|.++.|+. + .+++||+.|+.|++
T Consensus       139 Sv~Tf~gh~~~Iy-~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~  217 (311)
T KOG0277|consen  139 SVQTFNGHNSCIY-QAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRG  217 (311)
T ss_pred             ceEeecCCccEEE-EEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEE
Confidence              45666655544 3478888766 88999999999999987544445889999999999996 3 89999999999999


Q ss_pred             EeCCCC-ceEEEeeccCCCCcEEEEEccCCCC-eEEeee
Q 022303          259 SGLSSD-QRVATLRSTDCTGHIICLMYPQFLH-MLFFLC  295 (299)
Q Consensus       259 wd~~~~-~~~~~~~~~~~~~~i~~~~~s~~g~-~l~s~s  295 (299)
                      ||+++- .++..+.+|.-  .|+.++|||.-. .|+++|
T Consensus       218 wDir~~r~pl~eL~gh~~--AVRkvk~Sph~~~lLaSas  254 (311)
T KOG0277|consen  218 WDIRNLRTPLFELNGHGL--AVRKVKFSPHHASLLASAS  254 (311)
T ss_pred             EehhhccccceeecCCce--EEEEEecCcchhhHhhhcc
Confidence            999974 56888888888  999999999654 555554

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=1.6e-21  Score=146.66  Aligned_cols=255  Identities=15%  Similarity=0.121  Sum_probs=203.4

Q ss_pred             CCCCCCCCCCCcchhccCcHHHHHHHhh--ccCccchhhHHHhhhh-HHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhh
Q 022303           10 SPPPKKRSSKPRATIESLNGDIICMIFS--SLGFFDLVRCSAVCKS-WNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHL   86 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~h~~~v~~~~~~~~-~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~   86 (299)
                      .++.+.+++..+.+...|+.+-.....+  +.+|.+.|-.+++.|. .+.+++                ...|.++++| 
T Consensus        30 ~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~at----------------as~dk~ir~w-   92 (313)
T KOG1407|consen   30 CDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFAT----------------ASGDKTIRIW-   92 (313)
T ss_pred             ccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEE----------------ecCCceEEEE-
Confidence            4567788888999999999988865554  4489998888888765 455554                3477888888 


Q ss_pred             hhhhhccccceeecCceeeEEeeccccCeeEEEecCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCE
Q 022303           87 EELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK  165 (299)
Q Consensus        87 ~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (299)
                       +++.+..-..+          ....+.|+....|++ +++.++.|..|...|..+.+.+...+....+..++|+.++.+
T Consensus        93 -d~r~~k~~~~i----------~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~  161 (313)
T KOG1407|consen   93 -DIRSGKCTARI----------ETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDL  161 (313)
T ss_pred             -EeccCcEEEEe----------eccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCE
Confidence             43433333222          334445665566766 999999999999999999999888887777777999988888


Q ss_pred             EE-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeC
Q 022303          166 IV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS  242 (299)
Q Consensus       166 l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  242 (299)
                      ++ ....|.|.|.....-+  ..++.|... ..++.+.|++.++++|+.|..+.+||+..--+++.+.-+.-+|..+.|+
T Consensus       162 Fflt~GlG~v~ILsypsLkpv~si~AH~sn-CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS  240 (313)
T KOG1407|consen  162 FFLTNGLGCVEILSYPSLKPVQSIKAHPSN-CICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFS  240 (313)
T ss_pred             EEEecCCceEEEEeccccccccccccCCcc-eEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEec
Confidence            77 7777999998876443  444555533 3356788999999999999999999999888889998899999999999


Q ss_pred             CC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          243 ED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       243 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      -+ ++||+|++|..|-|=++++|..+..++...   +-..++|+|...+||-++.
T Consensus       241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~d  292 (313)
T KOG1407|consen  241 HDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACD  292 (313)
T ss_pred             cCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEec
Confidence            88 999999999999999999999999987665   7899999999999987653

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=3e-21  Score=142.59  Aligned_cols=230  Identities=11%  Similarity=0.130  Sum_probs=176.4

Q ss_pred             CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEE
Q 022303           40 GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCR  119 (299)
Q Consensus        40 ~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~  119 (299)
                      .|.+.|.|.+|+|.++++++                ...|.++|+.    .|..+... +.|  .--.+.-|.+.|..++
T Consensus        87 hhkgsiyc~~ws~~geliat----------------gsndk~ik~l----~fn~dt~~-~~g--~dle~nmhdgtirdl~  143 (350)
T KOG0641|consen   87 HHKGSIYCTAWSPCGELIAT----------------GSNDKTIKVL----PFNADTCN-ATG--HDLEFNMHDGTIRDLA  143 (350)
T ss_pred             ccCccEEEEEecCccCeEEe----------------cCCCceEEEE----eccccccc-ccC--cceeeeecCCceeeeE
Confidence            58899999999999999998                4456666654    12222111 111  1223467999999999


Q ss_pred             e---c--CC-EEEEEe-CCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeee----
Q 022303          120 M---K--RG-LILTGV-GDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFP----  187 (299)
Q Consensus       120 ~---~--~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~----  187 (299)
                      |   +  .+ +|++++ .|..|++-|..+|+..+.+.+|..-+..-++.++-.++ ++.|.+|++||++-+..+-.    
T Consensus       144 fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~  223 (350)
T KOG0641|consen  144 FLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND  223 (350)
T ss_pred             EecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCc
Confidence            8   2  22 677765 46788888999999999999998877766666788888 99999999999986643221    


Q ss_pred             ----ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022303          188 ----SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS  262 (299)
Q Consensus       188 ----~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~  262 (299)
                          ..+......+++.|.+..|++|..|....+||++-++.++.+..|...|.++.|+|. .++++++.|..|++-|++
T Consensus       224 ~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  224 FHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             ccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence                112223335789999999999999999999999999999999999999999999999 999999999999999996


Q ss_pred             CCce-----EEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          263 SDQR-----VATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       263 ~~~~-----~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                       |.+     +.....|..  .+..+.|+|..-.+++.|
T Consensus       304 -gdla~el~~~vv~ehkd--k~i~~rwh~~d~sfisss  338 (350)
T KOG0641|consen  304 -GDLAHELPIMVVAEHKD--KAIQCRWHPQDFSFISSS  338 (350)
T ss_pred             -cchhhcCceEEEEeccC--ceEEEEecCccceeeecc
Confidence             432     333345555  778889999887777665

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.88  E-value=1.3e-21  Score=157.45  Aligned_cols=237  Identities=12%  Similarity=0.082  Sum_probs=172.2

Q ss_pred             ccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeE
Q 022303           38 SLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQ  117 (299)
Q Consensus        38 ~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~  117 (299)
                      ...|.+.|+-++..|+-..|+.+               ......+-+|  +.+..+..........+-..+.+|++.=..
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt---------------~t~~~dv~Vf--d~tk~~s~~~~~~~~~Pdl~L~gH~~eg~g  182 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVAT---------------KTSSGDVYVF--DYTKHPSKPKASGECRPDLRLKGHEKEGYG  182 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEe---------------cCCCCCEEEE--EeccCCCcccccccCCCceEEEeecccccc
Confidence            34688999988888887666530               0012222233  323333322111011123356899998778


Q ss_pred             EEec---CCEEEEEeCCCcEEEEecCCce-------eEEEecCCCceeE-EEEecCCCEEE--EEcCCeEEEEecCCc--
Q 022303          118 CRMK---RGLILTGVGDKVMRLWSLEGYK-------CVEEYSLPNAASL-VDFDFDESKIV--GLIGTRICIWRRNGL--  182 (299)
Q Consensus       118 ~~~~---~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~l~--~~~d~~i~v~d~~~~--  182 (299)
                      +.|+   .+.|++++.|++|++||+....       +...+.+|+.++. ++|++-...++  ++.|+.+.+||+++.  
T Consensus       183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~  262 (422)
T KOG0264|consen  183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS  262 (422)
T ss_pred             cccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence            8883   3399999999999999987432       3456778888887 99998766544  888999999999952  


Q ss_pred             --eeeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC--CeEEEEeCCCcE
Q 022303          183 --RSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSI  256 (299)
Q Consensus       183 --~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i  256 (299)
                        ......|.+.+. +++|+|.+.. ||+|+.|++|.+||+|+- +++..+.+|...|..+.|+|+  ..||+++.|+.+
T Consensus       263 ~~~~~~~ah~~~vn-~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl  341 (422)
T KOG0264|consen  263 KPSHSVKAHSAEVN-CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRL  341 (422)
T ss_pred             CCcccccccCCcee-EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcE
Confidence              234455555554 5688888777 889999999999999974 467888899999999999998  789999999999


Q ss_pred             EEEeCCCC--------------ceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          257 AISGLSSD--------------QRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       257 ~iwd~~~~--------------~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      .|||+..-              +++..-.+|..  .|..+.|+|+..+++++
T Consensus       342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~--kV~DfsWnp~ePW~I~S  391 (422)
T KOG0264|consen  342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA--KVSDFSWNPNEPWTIAS  391 (422)
T ss_pred             EEEeccccccccChhhhccCCcceeEEecCccc--ccccccCCCCCCeEEEE
Confidence            99999641              23455667777  89999999998877654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=4.6e-22  Score=171.86  Aligned_cols=187  Identities=16%  Similarity=0.207  Sum_probs=155.2

Q ss_pred             eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEecCCce-
Q 022303          109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWRRNGLR-  183 (299)
Q Consensus       109 ~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~~~~-  183 (299)
                      .+|.++|..+.| +.+ ++++|+.|..|++|+..+.+++.++.+|-.-+ .+.|++.-..|+ ++.|.+|+||+-.+.. 
T Consensus        48 deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~  127 (1202)
T KOG0292|consen   48 DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC  127 (1202)
T ss_pred             hccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce
Confidence            799999999999 555 99999999999999999999999999986555 499999999999 9999999999998876 


Q ss_pred             -eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCC--------c---------------------ceeeeccccC
Q 022303          184 -SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS--------R---------------------KCSQIIRMHC  233 (299)
Q Consensus       184 -~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--------~---------------------~~~~~~~~~~  233 (299)
                       .++++|..-+. +..|+|..+.+++++-|.+|++||+.-        +                     -....+.+|.
T Consensus       128 iavltGHnHYVM-cAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD  206 (1202)
T KOG0292|consen  128 IAVLTGHNHYVM-CAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD  206 (1202)
T ss_pred             EEEEecCceEEE-eeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc
Confidence             44555543322 345677777799999999999999741        1                     0123445899


Q ss_pred             CceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc--eEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          234 APVTSLSLSED-QLIISGSSLGSIAISGLSSDQ--RVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       234 ~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      ..|+-++|+|. .++++|+.|..|++|.....+  .+.+..+|.+  .|.++-|+|...++++.|--+
T Consensus       207 RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n--nVssvlfhp~q~lIlSnsEDk  272 (1202)
T KOG0292|consen  207 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN--NVSSVLFHPHQDLILSNSEDK  272 (1202)
T ss_pred             cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC--CcceEEecCccceeEecCCCc
Confidence            99999999999 999999999999999987654  3567788888  999999999999999887543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=3.9e-22  Score=158.78  Aligned_cols=225  Identities=16%  Similarity=0.146  Sum_probs=173.8

Q ss_pred             CCCCCCCCCCCcchhccCcHHHHHHHhhcc-CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhh
Q 022303           10 SPPPKKRSSKPRATIESLNGDIICMIFSSL-GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEE   88 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~   88 (299)
                      |+.+..-.++.+..+.+|+..++.....|. +|...+.+++|+|++..+++                ...|.++-.|.. 
T Consensus       279 PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~----------------Gs~dr~i~~wdl-  341 (519)
T KOG0293|consen  279 PDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT----------------GSPDRTIIMWDL-  341 (519)
T ss_pred             CCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEe----------------cCCCCcEEEecC-
Confidence            455556667888889999999998777665 46688999999999999887                334455545522 


Q ss_pred             hhhccccceeecCceeeEEeeccc-cCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCE
Q 022303           89 LAMKHHRFALEEGRIDIDQWKAHS-VGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK  165 (299)
Q Consensus        89 ~~~~~~~~~l~~g~~~~~~~~~h~-~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (299)
                           ++..       ...+++-. ..|.+++. +|+ ++++...|..|++++.++......+..+.++.+.+.+.++++
T Consensus       342 -----Dgn~-------~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~  409 (519)
T KOG0293|consen  342 -----DGNI-------LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKL  409 (519)
T ss_pred             -----Ccch-------hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcE
Confidence                 2211       12223332 45888888 666 888889999999999998877777788888888999999999


Q ss_pred             EE-EEcCCeEEEEecCCce--eeeeccCCc-cceeeeeccCC-CeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEE
Q 022303          166 IV-GLIGTRICIWRRNGLR--SVFPSREGT-FMKGLCMRYFD-PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS  240 (299)
Q Consensus       166 l~-~~~d~~i~v~d~~~~~--~~~~~~~~~-~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~  240 (299)
                      ++ .-.+..+++||++...  ..+.++... ....-||...+ ..+++|++|++|+||+..+++++.++.+|...|++++
T Consensus       410 ~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVs  489 (519)
T KOG0293|consen  410 ALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVS  489 (519)
T ss_pred             EEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEe
Confidence            88 8889999999999664  233344332 22122444443 4489999999999999999999999999999999999


Q ss_pred             eCCC--CeEEEEeCCCcEEEEeCCC
Q 022303          241 LSED--QLIISGSSLGSIAISGLSS  263 (299)
Q Consensus       241 ~~~~--~~l~~~~~dg~i~iwd~~~  263 (299)
                      |+|.  .++|+|+.||+|+||....
T Consensus       490 wNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  490 WNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             cCCCCHHHhhccCCCCeEEEecCCc
Confidence            9996  8999999999999998753

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=6.4e-22  Score=170.13  Aligned_cols=188  Identities=15%  Similarity=0.150  Sum_probs=130.2

Q ss_pred             EEee-ccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-----------EEEec---CCCEEE-
Q 022303          106 DQWK-AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-----------VDFDF---DESKIV-  167 (299)
Q Consensus       106 ~~~~-~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------~~~~~---~~~~l~-  167 (299)
                      +.+. +|.+.|+++.| ++| |||+|+.|+.|+||.+...+....-......+.           +..++   .++... 
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            3445 89999999999 677 999999999999999875332110000000000           11111   001111 


Q ss_pred             --EEcCCeEEEEecCCc---eeeeeccCCccceeeeeccCCC-eEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEe
Q 022303          168 --GLIGTRICIWRRNGL---RSVFPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSL  241 (299)
Q Consensus       168 --~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~  241 (299)
                        +..... .+.+....   ...+....+|...++.++...+ +|++++.|.+|++|++...+++..| .|.+.|+|++|
T Consensus       340 ~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaF  417 (712)
T KOG0283|consen  340 RKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAF  417 (712)
T ss_pred             ccccCCcc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEe
Confidence              112222 22222111   1222333444444666666644 4899999999999999999999999 79999999999


Q ss_pred             CCC--CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          242 SED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       242 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      +|-  +++++|+-||.++||++...+.+.-...+.   -|++++|.|||++.+.|++.|
T Consensus       418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~---lITAvcy~PdGk~avIGt~~G  473 (712)
T KOG0283|consen  418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD---LITAVCYSPDGKGAVIGTFNG  473 (712)
T ss_pred             cccCCCcEeecccccceEEeecCcCeeEeehhhhh---hheeEEeccCCceEEEEEecc
Confidence            984  999999999999999998777666555554   799999999999999999987

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.87  E-value=7.7e-22  Score=156.99  Aligned_cols=236  Identities=14%  Similarity=0.130  Sum_probs=183.1

Q ss_pred             HHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeecccc
Q 022303           34 MIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSV  113 (299)
Q Consensus        34 ~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~  113 (299)
                      ..+.+--|.+.|..+.|-++...+++                ...|..+++|......          ...+.++.|..+
T Consensus       167 ~~~~ld~h~gev~~v~~l~~sdtlat----------------gg~Dr~Ik~W~v~~~k----------~~~~~tLaGs~g  220 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLRNSDTLAT----------------GGSDRIIKLWNVLGEK----------SELISTLAGSLG  220 (459)
T ss_pred             hhhhhhccccccceeEEccCcchhhh----------------cchhhhhhhhhcccch----------hhhhhhhhccCC
Confidence            34455568888999999888888887                3356667777431111          112556688899


Q ss_pred             CeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeeecc
Q 022303          114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSR  189 (299)
Q Consensus       114 ~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~  189 (299)
                      +|+.+.| +++ ++++++.|+.+++|++...+...++.+|...++ +.|......++ ++.|.+|+.||+....+.....
T Consensus       221 ~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l  300 (459)
T KOG0288|consen  221 NITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL  300 (459)
T ss_pred             CcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc
Confidence            9999999 555 999999999999999999999999999977666 88877666577 9999999999999865443333


Q ss_pred             CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEE
Q 022303          190 EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVA  268 (299)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~  268 (299)
                      .+...  ..+......+++|..|++|++||.++..+..+...+. .|+++..+++ ..+.+++.|.++.+.|+++.+..+
T Consensus       301 ~~S~c--nDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~  377 (459)
T KOG0288|consen  301 PGSQC--NDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQ  377 (459)
T ss_pred             ccccc--cceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEE
Confidence            32222  1222224558899999999999999999998886654 8999999999 778888999999999999998888


Q ss_pred             EeeccCC--CCcEEEEEccCCCCeEEeeeccc
Q 022303          269 TLRSTDC--TGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       269 ~~~~~~~--~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      ++.....  ..-.+.+.|||++.|+++||..+
T Consensus       378 ~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg  409 (459)
T KOG0288|consen  378 TFSAEGFKCASDWTRVVFSPDGSYVAAGSADG  409 (459)
T ss_pred             EeeccccccccccceeEECCCCceeeeccCCC
Confidence            7765432  12588999999999999999754

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=2.2e-21  Score=162.43  Aligned_cols=191  Identities=19%  Similarity=0.235  Sum_probs=158.7

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCc--eeEEEecCCC-ceeEEEE-ecCCCEEE-EEcCCeEEEE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY--KCVEEYSLPN-AASLVDF-DFDESKIV-GLIGTRICIW  177 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~-~~~~~~~-~~~~~~l~-~~~d~~i~v~  177 (299)
                      +..++.|.+-|+.+.. .++ .|+++|.|-+|++|+...+  -+..++..|. .+.+++. .++..+++ |+-|+.|.+|
T Consensus        66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflW  145 (735)
T KOG0308|consen   66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLW  145 (735)
T ss_pred             hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEE
Confidence            4456889999999877 444 9999999999999999876  5677777775 4555777 67777788 9999999999


Q ss_pred             ecCCcee----ee-----eccC-Cccce--eeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-
Q 022303          178 RRNGLRS----VF-----PSRE-GTFMK--GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-  244 (299)
Q Consensus       178 d~~~~~~----~~-----~~~~-~~~~~--~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-  244 (299)
                      |++++..    .+     .... ++...  .+++++.+..+++|+..+.+++||.++.+.+..+++|...|..+..++| 
T Consensus       146 Din~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDG  225 (735)
T KOG0308|consen  146 DINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDG  225 (735)
T ss_pred             EccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCC
Confidence            9996621    01     0111 22222  3567777778999999999999999999999999999999999999999 


Q ss_pred             CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          245 QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       245 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ..++++++||+|++||+...+|+.++..|.+  .|+++..+|+-+.+.+|+-.
T Consensus       226 t~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~~sf~~vYsG~rd  276 (735)
T KOG0308|consen  226 TRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSSPSFTHVYSGGRD  276 (735)
T ss_pred             CeEeecCCCceEEeeeccccceeeeEEeccC--ceEEEeeCCCcceEEecCCC
Confidence            8999999999999999999999999999999  89999999999999998754

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=2.6e-21  Score=156.99  Aligned_cols=187  Identities=15%  Similarity=0.163  Sum_probs=149.2

Q ss_pred             EeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE--EEcCCeEEEEecCC
Q 022303          107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV--GLIGTRICIWRRNG  181 (299)
Q Consensus       107 ~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~--~~~d~~i~v~d~~~  181 (299)
                      ++.-....|.++.| .|| +|+.|...|.|++||+.+...+..+..|...+. +.|+|+++.++  |+.|+.+++||+.+
T Consensus        63 ~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~  142 (487)
T KOG0310|consen   63 TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST  142 (487)
T ss_pred             hHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence            34567788999999 777 899999999999999777666777888877776 89999887755  78888999999998


Q ss_pred             cee--eeeccCCccceeeeeccCCC-eEEEecCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC-CeEEEEeCCCcE
Q 022303          182 LRS--VFPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSI  256 (299)
Q Consensus       182 ~~~--~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i  256 (299)
                      ...  .+..|+..+. +.++.|..+ .+++|+.||+|++||.++. ..+.++ .|..+|..+.+-|. ..+++++ ...+
T Consensus       143 a~v~~~l~~htDYVR-~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~v  219 (487)
T KOG0310|consen  143 AYVQAELSGHTDYVR-CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSV  219 (487)
T ss_pred             cEEEEEecCCcceeE-eeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeE
Confidence            853  2344444433 345666655 5899999999999999987 566677 78999999999998 8888887 4669


Q ss_pred             EEEeCCCC-ceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          257 AISGLSSD-QRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       257 ~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      ++||+-+| +.+..+..|..  .|+|+++..++..|++||+-+
T Consensus       220 kVWDl~~G~qll~~~~~H~K--tVTcL~l~s~~~rLlS~sLD~  260 (487)
T KOG0310|consen  220 KVWDLTTGGQLLTSMFNHNK--TVTCLRLASDSTRLLSGSLDR  260 (487)
T ss_pred             EEEEecCCceehhhhhcccc--eEEEEEeecCCceEeeccccc
Confidence            99999865 45555555777  899999999999999999753

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.87  E-value=1.3e-21  Score=159.81  Aligned_cols=193  Identities=16%  Similarity=0.174  Sum_probs=142.0

Q ss_pred             EEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCc---------------------------eeEEEe--------
Q 022303          106 DQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY---------------------------KCVEEY--------  148 (299)
Q Consensus       106 ~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~---------------------------~~~~~~--------  148 (299)
                      -.+++|+..|.++.+ +.+ .|++|+.|.+|++||+...                           ..+..+        
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl  240 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL  240 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence            355889999999999 666 9999999999999997521                           000000        


Q ss_pred             ------------------------cCCCcee-EEEEecCCCE-EE-EEcCCeEEEEecCCce---eeeeccC--C--ccc
Q 022303          149 ------------------------SLPNAAS-LVDFDFDESK-IV-GLIGTRICIWRRNGLR---SVFPSRE--G--TFM  194 (299)
Q Consensus       149 ------------------------~~~~~~~-~~~~~~~~~~-l~-~~~d~~i~v~d~~~~~---~~~~~~~--~--~~~  194 (299)
                                              ++|-..+ +.+|+|..+. ++ ++.||++++||+.+.+   .++....  +  ...
T Consensus       241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~  320 (641)
T KOG0772|consen  241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV  320 (641)
T ss_pred             EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence                                    1233333 3789997765 33 9999999999998754   2332211  1  112


Q ss_pred             eeeeeccCCCeEEEecCCCcEEEEEcCCccee---eeccccCC--ceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC-ceE
Q 022303          195 KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS---QIIRMHCA--PVTSLSLSED-QLIISGSSLGSIAISGLSSD-QRV  267 (299)
Q Consensus       195 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~--~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~  267 (299)
                      ...+|+++++.+++|..||.|.+|+.......   ..-..|..  .|++|.|+++ ++|++-+.|+++++||+++. +++
T Consensus       321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL  400 (641)
T KOG0772|consen  321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPL  400 (641)
T ss_pred             eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccch
Confidence            24589999999999999999999998654322   22235665  8999999999 99999999999999999974 567


Q ss_pred             EEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          268 ATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       268 ~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      ....+-....+-+.++|||+.+++++|+..+
T Consensus       401 ~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~  431 (641)
T KOG0772|consen  401 NVRTGLPTPFPGTDCCFSPDDKLILTGTSAP  431 (641)
T ss_pred             hhhcCCCccCCCCccccCCCceEEEeccccc
Confidence            6666554433678899999999999997543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=3e-21  Score=155.59  Aligned_cols=244  Identities=17%  Similarity=0.169  Sum_probs=178.4

Q ss_pred             HhhccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEe-
Q 022303           35 IFSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQW-  108 (299)
Q Consensus        35 i~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-  108 (299)
                      +..+-.|+-.+.|++++++..++.+     ++.-|+....+....+.+.+.-                +.....+.+.- 
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev----------------~k~~~~~~k~~r  198 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV----------------LKSHGNPLKESR  198 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchh----------------hhhccCCCCccc
Confidence            5556689999999999999998887     1222333222211111111100                00011111111 


Q ss_pred             eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce-
Q 022303          109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR-  183 (299)
Q Consensus       109 ~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~-  183 (299)
                      ++|...|.+++. +++ ||++|+.|..|.||+.++.+.++.+.+|...+. ++|-.....++ ++.|.++++|++.... 
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~  278 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY  278 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence            489999999988 666 999999999999999999999999999977666 99988777777 9999999999998764 


Q ss_pred             -eeeeccCCccceeeeeccCCCe--EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEe
Q 022303          184 -SVFPSREGTFMKGLCMRYFDPE--AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISG  260 (299)
Q Consensus       184 -~~~~~~~~~~~~~~~~~~~~~~--l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd  260 (299)
                       ..+.+|.+.   +.++......  +.+|+.|.++++|++.. +....+.++.+.+-|++|-.+..+++|+.+|.|.+|+
T Consensus       279 vetlyGHqd~---v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs  354 (479)
T KOG0299|consen  279 VETLYGHQDG---VLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWS  354 (479)
T ss_pred             HHHHhCCccc---eeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccceeeccCCceEEEee
Confidence             344555554   3445444433  55566999999999964 3344566888899999999888899999999999999


Q ss_pred             CCCCceEEEeeccCCC----------CcEEEEEccCCCCeEEeeeccc
Q 022303          261 LSSDQRVATLRSTDCT----------GHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       261 ~~~~~~~~~~~~~~~~----------~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      +.+.+++.+....++.          ..|++++..|...++++||+-+
T Consensus       355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G  402 (479)
T KOG0299|consen  355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSG  402 (479)
T ss_pred             ecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCC
Confidence            9998888777543321          1789999999999999999643

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.87  E-value=1.2e-20  Score=144.35  Aligned_cols=187  Identities=17%  Similarity=0.189  Sum_probs=140.4

Q ss_pred             eccccCeeEEEe--cCC-EEEEEeCCCcEEEEecCCce----------eEEEe-----cCCCceeE-EEEecCCCE-EE-
Q 022303          109 KAHSVGVDQCRM--KRG-LILTGVGDKVMRLWSLEGYK----------CVEEY-----SLPNAASL-VDFDFDESK-IV-  167 (299)
Q Consensus       109 ~~h~~~i~~~~~--~~~-~l~s~~~dg~i~iwd~~~~~----------~~~~~-----~~~~~~~~-~~~~~~~~~-l~-  167 (299)
                      ..|.+.|+++..  ..+ |+++|+.||.|.+||++...          .+..+     ..|...+. +.|-|-..- +. 
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            679999999988  234 99999999999999997532          11111     13444554 778774443 44 


Q ss_pred             EEcCCeEEEEecCCceeee-eccCCccceeeeeccCCC---eEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCC
Q 022303          168 GLIGTRICIWRRNGLRSVF-PSREGTFMKGLCMRYFDP---EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE  243 (299)
Q Consensus       168 ~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~  243 (299)
                      ++.|++++|||.++.+... ...++.+. ..+++|...   .+++|..+-+|++-|+.+|.....+.+|.+.|.++.|+|
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~~VY-shamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp  198 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEGKVY-SHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP  198 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCceee-hhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence            8999999999999876332 22333322 235666544   378888999999999999999999999999999999999


Q ss_pred             C-C-eEEEEeCCCcEEEEeCCCC-ceEEEeeccCC------------CCcEEEEEccCCCCeEEeeec
Q 022303          244 D-Q-LIISGSSLGSIAISGLSSD-QRVATLRSTDC------------TGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       244 ~-~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~------------~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      . . .|++|+.||.|++||++.. .+...+..|..            .+.|.+++|+.+|.++++++.
T Consensus       199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt  266 (397)
T KOG4283|consen  199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT  266 (397)
T ss_pred             CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence            8 4 6899999999999999864 45555543331            137999999999999998765

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.86  E-value=4.4e-22  Score=156.04  Aligned_cols=247  Identities=13%  Similarity=0.108  Sum_probs=178.5

Q ss_pred             CCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhcCCCCCCCchhhhhhh
Q 022303           13 PKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLHGFSNTSGSSMRLHLE   87 (299)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~~~~~~~d~~~~~~~~   87 (299)
                      .+-+++..+--+.+|+++...++..+..|.+.|+.+.+..  ..+++     +++.|.......+ .     ...+.-+.
T Consensus        80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~-t-----ilg~s~~~  151 (433)
T KOG0268|consen   80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLH-T-----ILGKSVYL  151 (433)
T ss_pred             hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcce-e-----eecccccc
Confidence            3456778889999999999999999999999999999988  33333     4555653221100 0     00000011


Q ss_pred             hhhhccccceeecCcee-----------eEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCCCc
Q 022303           88 ELAMKHHRFALEEGRID-----------IDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNA  153 (299)
Q Consensus        88 ~~~~~~~~~~l~~g~~~-----------~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  153 (299)
                      .+........+++.+..           ++.+.--.+.|.++.| |.+  .|++++.|+.|.+||+.+++++..+...-.
T Consensus       152 gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mR  231 (433)
T KOG0268|consen  152 GIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMR  231 (433)
T ss_pred             ccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecc
Confidence            22222223333444333           4444555667778888 433  899999999999999999999887776655


Q ss_pred             eeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCcccee--eeeccCCCeEEEecCCCcEEEEEcCCcceeeecc
Q 022303          154 ASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKG--LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR  230 (299)
Q Consensus       154 ~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  230 (299)
                      ...++|+|.+-.++ +..|..++.||++.-......+.++...+  +.++|.|+.+++|+.|.+|+||..+.+.....+.
T Consensus       232 TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh  311 (433)
T KOG0268|consen  232 TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH  311 (433)
T ss_pred             ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh
Confidence            56699999766666 99999999999998776666666666655  3677888899999999999999999776544442


Q ss_pred             -ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceE
Q 022303          231 -MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV  267 (299)
Q Consensus       231 -~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~  267 (299)
                       ..-+.|.++.|+-| +++++||.|+.|++|.....+.+
T Consensus       312 tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  312 TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             HhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence             22356999999999 99999999999999997655443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.86  E-value=1.3e-20  Score=158.81  Aligned_cols=184  Identities=16%  Similarity=0.178  Sum_probs=153.5

Q ss_pred             eeeEEeeccccCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEEEEcCCeEEEEecC
Q 022303          103 IDIDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIVGLIGTRICIWRRN  180 (299)
Q Consensus       103 ~~~~~~~~h~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~d~~i~v~d~~  180 (299)
                      .++.++++|+..|.++.. .++.++|||+|.++++|..  +++...+++|...+. +..-|++.++-|+.|.+|++|.-.
T Consensus        92 ~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~  169 (745)
T KOG0301|consen   92 EPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGG  169 (745)
T ss_pred             CchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccCC
Confidence            347788999999999986 5558999999999999965  566777888876665 777777755559999999999987


Q ss_pred             CceeeeeccCCccceeeeeccCCC-eEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEE
Q 022303          181 GLRSVFPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI  258 (299)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~i  258 (299)
                      +....+..|...+.   .+...+. .+++++.||.|++|++ +++++.++.+|...+.++....+ +.++++++|++++|
T Consensus       170 ~~l~tf~gHtD~VR---gL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlri  245 (745)
T KOG0301|consen  170 TLLKTFSGHTDCVR---GLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRI  245 (745)
T ss_pred             chhhhhccchhhee---eeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEE
Confidence            77778888777654   3333333 5899999999999999 68999999999999999996655 99999999999999


Q ss_pred             EeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          259 SGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       259 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      |+..  ++.+.+..+..  .|+++.+-++|..++.||-
T Consensus       246 W~~~--e~~q~I~lPtt--siWsa~~L~NgDIvvg~SD  279 (745)
T KOG0301|consen  246 WKKD--ECVQVITLPTT--SIWSAKVLLNGDIVVGGSD  279 (745)
T ss_pred             eecC--ceEEEEecCcc--ceEEEEEeeCCCEEEeccC
Confidence            9975  88888887776  8999999999998877764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=4e-21  Score=148.57  Aligned_cols=226  Identities=15%  Similarity=0.207  Sum_probs=165.6

Q ss_pred             HhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccC
Q 022303           35 IFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVG  114 (299)
Q Consensus        35 i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~  114 (299)
                      +..+.+|.+.|..++.......+.+                ...|++.++|  ++..+.          .+.+|.||.+.
T Consensus       141 vre~~GHkDGiW~Vaa~~tqpi~gt----------------ASADhTA~iW--s~Esg~----------CL~~Y~GH~GS  192 (481)
T KOG0300|consen  141 VRELEGHKDGIWHVAADSTQPICGT----------------ASADHTARIW--SLESGA----------CLATYTGHTGS  192 (481)
T ss_pred             hhhhcccccceeeehhhcCCcceee----------------cccccceeEE--eecccc----------ceeeecccccc
Confidence            3345577777766655444443333                3478888888  433222          23466899999


Q ss_pred             eeEEEe-cCC-EEEEEeCCCcEEEEecC------C-----c-----------------------------eeEEEecCCC
Q 022303          115 VDQCRM-KRG-LILTGVGDKVMRLWSLE------G-----Y-----------------------------KCVEEYSLPN  152 (299)
Q Consensus       115 i~~~~~-~~~-~l~s~~~dg~i~iwd~~------~-----~-----------------------------~~~~~~~~~~  152 (299)
                      |+++.| +.+ ++++++.|++..||...      .     +                             .++..+.+|.
T Consensus       193 VNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~  272 (481)
T KOG0300|consen  193 VNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHR  272 (481)
T ss_pred             eeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccc
Confidence            999999 444 99999999999999721      1     0                             1334455666


Q ss_pred             ceeE-EEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc-ceee
Q 022303          153 AASL-VDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQ  227 (299)
Q Consensus       153 ~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~  227 (299)
                      .++. ..|-..++.++ ++.|.+..+||++++.  ..+.+|......+ +-+|....+++.+.|.+.++||.+.. ..+.
T Consensus       273 ~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHc-stHptQrLVvTsSrDtTFRLWDFReaI~sV~  351 (481)
T KOG0300|consen  273 AVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHC-STHPTQRLVVTSSRDTTFRLWDFREAIQSVA  351 (481)
T ss_pred             cceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcccc-ccCCcceEEEEeccCceeEeccchhhcceee
Confidence            5555 77888888888 9999999999999986  4566666655533 66677777899999999999999843 3467


Q ss_pred             eccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCC-ceEEEeeccCCCCcEEEEEccCCCCeEE
Q 022303          228 IIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSD-QRVATLRSTDCTGHIICLMYPQFLHMLF  292 (299)
Q Consensus       228 ~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l~  292 (299)
                      .|++|.+.|+++.|..+..+++|+.|.+|++||+++. .++.++....   +++.++.+..+..++
T Consensus       352 VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS---~~NRvavs~g~~iIA  414 (481)
T KOG0300|consen  352 VFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDS---PANRVAVSKGHPIIA  414 (481)
T ss_pred             eecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCC---ccceeEeecCCceEE
Confidence            8889999999999998877999999999999999875 4567776554   566666665554444

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.6e-21  Score=156.19  Aligned_cols=234  Identities=16%  Similarity=0.151  Sum_probs=173.0

Q ss_pred             hhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCc
Q 022303           23 TIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGR  102 (299)
Q Consensus        23 ~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~  102 (299)
                      .+..|+..-......+.--++.|.|++-+|.|.+++.                  +...-.+|.+.+..+....      
T Consensus        62 ~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~a------------------g~i~g~lYlWelssG~LL~------  117 (476)
T KOG0646|consen   62 LLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLA------------------GTISGNLYLWELSSGILLN------  117 (476)
T ss_pred             cccccccCchhhhhhhcccccceeeeecCCCceEEEe------------------ecccCcEEEEEeccccHHH------
Confidence            4555554443333344445677888888888888875                  1122234444444433333      


Q ss_pred             eeeEEeeccccCeeEEEec-CC-EEEEEeCCCcEEEEecC---------CceeEEEecCCCceeE-EEEecC--CCEEE-
Q 022303          103 IDIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLE---------GYKCVEEYSLPNAASL-VDFDFD--ESKIV-  167 (299)
Q Consensus       103 ~~~~~~~~h~~~i~~~~~~-~~-~l~s~~~dg~i~iwd~~---------~~~~~~~~~~~~~~~~-~~~~~~--~~~l~-  167 (299)
                          ++.+|-.+|+|+.|. |+ +|+|||.||.|.+|.+.         +-++.+.+..|.-.+. +...+.  ...++ 
T Consensus       118 ----v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~T  193 (476)
T KOG0646|consen  118 ----VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYT  193 (476)
T ss_pred             ----HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEE
Confidence                338999999999994 44 99999999999999864         2356777888875555 666554  34566 


Q ss_pred             EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc----------------ceeeeccc
Q 022303          168 GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR----------------KCSQIIRM  231 (299)
Q Consensus       168 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------------~~~~~~~~  231 (299)
                      ++.|.++++||+..+.............++++.|.+..++.|+.+|.|.+.++...                ..+..+.+
T Consensus       194 aS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G  273 (476)
T KOG0646|consen  194 ASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG  273 (476)
T ss_pred             ecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc
Confidence            99999999999999876555544444556788999999999999999998886532                23445557


Q ss_pred             cCC--ceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccC
Q 022303          232 HCA--PVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQ  286 (299)
Q Consensus       232 ~~~--~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  286 (299)
                      |.+  +|+|++++-| .+|++|+.||.+.|||+.+.++++++....+  +|+.+.+.|
T Consensus       274 h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kg--pVtnL~i~~  329 (476)
T KOG0646|consen  274 HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKG--PVTNLQINP  329 (476)
T ss_pred             ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcc--ccceeEeec
Confidence            877  9999999999 9999999999999999999999998875555  899888855

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.85  E-value=4.1e-20  Score=148.84  Aligned_cols=189  Identities=14%  Similarity=0.210  Sum_probs=147.8

Q ss_pred             eEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCce----------eEEEecCCCc-eeEEEEecCCCE-EE-E
Q 022303          105 IDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYK----------CVEEYSLPNA-ASLVDFDFDESK-IV-G  168 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~-l~-~  168 (299)
                      +..--.|.+.|+.+.+ |.+  .+++++..+.+.|||..+..          +-..+.+|.. ...++|++.... ++ +
T Consensus       117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~  196 (422)
T KOG0264|consen  117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG  196 (422)
T ss_pred             EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence            4444579999999977 544  88899999999999976422          1125566665 566888875543 44 9


Q ss_pred             EcCCeEEEEecCCce---------eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcC--CcceeeeccccCCce
Q 022303          169 LIGTRICIWRRNGLR---------SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMY--SRKCSQIIRMHCAPV  236 (299)
Q Consensus       169 ~~d~~i~v~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~i  236 (299)
                      +.|+.|++||+....         ..+..|...+.. ++|++.... ++++++|+.+.|||+|  +.++.....+|...|
T Consensus       197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeD-V~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v  275 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVED-VAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV  275 (422)
T ss_pred             cCCCcEEEEeccccccCCccccceEEeecCCcceeh-hhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence            999999999997532         345666665554 378877766 8899999999999999  455666677999999


Q ss_pred             eEEEeCCC--CeEEEEeCCCcEEEEeCCC-CceEEEeeccCCCCcEEEEEccCCC-CeEEeeec
Q 022303          237 TSLSLSED--QLIISGSSLGSIAISGLSS-DQRVATLRSTDCTGHIICLMYPQFL-HMLFFLCF  296 (299)
Q Consensus       237 ~~~~~~~~--~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~s~s~  296 (299)
                      +|++|+|-  ..||+|+.|++|++||+|+ .+++.++.+|..  .|.++.|+|.. ..||+++.
T Consensus       276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d--ev~~V~WSPh~etvLASSg~  337 (422)
T KOG0264|consen  276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED--EVFQVEWSPHNETVLASSGT  337 (422)
T ss_pred             eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc--ceEEEEeCCCCCceeEeccc
Confidence            99999996  7899999999999999997 467999999999  99999999965 45666554

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=7.4e-20  Score=153.31  Aligned_cols=181  Identities=14%  Similarity=0.157  Sum_probs=153.3

Q ss_pred             cccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecC-CCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceee
Q 022303          111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSL-PNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSV  185 (299)
Q Consensus       111 h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~  185 (299)
                      +...|+++.| +++ +|+.|..+|.|.|||..+.+.+..+.. |..-+. ++|.  +..+. |+.++.|..+|++..+..
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~  293 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV  293 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence            3788999999 555 999999999999999999999999988 555444 7776  55666 999999999999987633


Q ss_pred             ---eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC--CeEEEEeC--CCcEEE
Q 022303          186 ---FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSS--LGSIAI  258 (299)
Q Consensus       186 ---~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~--dg~i~i  258 (299)
                         +..|...+. .+.|++++.++++|+.|+.+.|||....+++..+..|...|..++|+|-  .+||+|+.  |++|++
T Consensus       294 ~~~~~~H~qeVC-gLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f  372 (484)
T KOG0305|consen  294 VSTLQGHRQEVC-GLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF  372 (484)
T ss_pred             hhhhhcccceee-eeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence               334444443 5789999999999999999999999888889999999999999999997  78999764  999999


Q ss_pred             EeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          259 SGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       259 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ||..+++.+..+....   .|.+|.|++..+-|+++--|
T Consensus       373 wn~~~g~~i~~vdtgs---QVcsL~Wsk~~kEi~sthG~  408 (484)
T KOG0305|consen  373 WNTNTGARIDSVDTGS---QVCSLIWSKKYKELLSTHGY  408 (484)
T ss_pred             EEcCCCcEecccccCC---ceeeEEEcCCCCEEEEecCC
Confidence            9999999998887655   79999999998877776544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=5.9e-19  Score=136.34  Aligned_cols=188  Identities=14%  Similarity=0.171  Sum_probs=148.9

Q ss_pred             EeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEc--CCeEEEEecC
Q 022303          107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLI--GTRICIWRRN  180 (299)
Q Consensus       107 ~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~--d~~i~v~d~~  180 (299)
                      .+....+.|+++.| +++ ++++++.|.++++||..+++.+.++..++..+. ++|....+.++ ++.  |.+|+..++.
T Consensus         9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~   88 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH   88 (311)
T ss_pred             ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence            44556789999999 455 899999999999999999999999998766655 88876666666 666  7899999998


Q ss_pred             Cce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEE
Q 022303          181 GLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA  257 (299)
Q Consensus       181 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~  257 (299)
                      +.+  ..+.+|...+. .++++|-++.+++++.|++|++||++..++...+....  -..++|+|+ -++|++...+.|+
T Consensus        89 dNkylRYF~GH~~~V~-sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~~~~Ik  165 (311)
T KOG1446|consen   89 DNKYLRYFPGHKKRVN-SLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANGSELIK  165 (311)
T ss_pred             cCceEEEcCCCCceEE-EEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecCCCeEE
Confidence            886  56788887766 45999999999999999999999999877766554333  345789999 7788888777999


Q ss_pred             EEeCCCC--ceEEEeecc-CCCCcEEEEEccCCCCeEEeeecc
Q 022303          258 ISGLSSD--QRVATLRST-DCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       258 iwd~~~~--~~~~~~~~~-~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +||++.-  .+..++... ......+.|.|||||++++.++..
T Consensus       166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~  208 (311)
T KOG1446|consen  166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA  208 (311)
T ss_pred             EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC
Confidence            9999873  455555443 111279999999999999887643

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.85  E-value=6.9e-21  Score=160.53  Aligned_cols=213  Identities=16%  Similarity=0.166  Sum_probs=170.8

Q ss_pred             CCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcc
Q 022303           14 KKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKH   93 (299)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (299)
                      +.-.++.+.++..|.......+..+.+|+..|.|+....++. +++                .+-|.+.|+|-.    ++
T Consensus        73 ~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iS----------------gSWD~TakvW~~----~~  131 (745)
T KOG0301|consen   73 RLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LIS----------------GSWDSTAKVWRI----GE  131 (745)
T ss_pred             ceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEe----------------cccccceEEecc----hh
Confidence            344567888888898888888889999999999998888887 565                346778888822    22


Q ss_pred             ccceeecCceeeEEeeccccCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEEEEcC
Q 022303           94 HRFALEEGRIDIDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIVGLIG  171 (299)
Q Consensus        94 ~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~d  171 (299)
                      ....          +++|+.+|+++.. +++.++||+.|.+|++|.-  ++.++++.+|...+. +++-+++.++.++.|
T Consensus       132 l~~~----------l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsND  199 (745)
T KOG0301|consen  132 LVYS----------LQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSND  199 (745)
T ss_pred             hhcc----------cCCcchheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCC
Confidence            2222          4899999999866 7779999999999999964  788999999988887 999888888889999


Q ss_pred             CeEEEEecCCce-eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEE
Q 022303          172 TRICIWRRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISG  250 (299)
Q Consensus       172 ~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~  250 (299)
                      |.|+.|++.+.. ....+|.+... .+.+...+..++++++|+++++|+..  ++.+.+.-....|+++.+-++.-+++|
T Consensus       200 g~Ir~w~~~ge~l~~~~ghtn~vY-sis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg  276 (745)
T KOG0301|consen  200 GSIRLWDLDGEVLLEMHGHTNFVY-SISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVG  276 (745)
T ss_pred             ceEEEEeccCceeeeeeccceEEE-EEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEe
Confidence            999999995543 34445554443 33555667779999999999999987  777888655558999998877559999


Q ss_pred             eCCCcEEEEeCC
Q 022303          251 SSLGSIAISGLS  262 (299)
Q Consensus       251 ~~dg~i~iwd~~  262 (299)
                      ++||.||||...
T Consensus       277 ~SDG~VrVfT~~  288 (745)
T KOG0301|consen  277 GSDGRVRVFTVD  288 (745)
T ss_pred             ccCceEEEEEec
Confidence            999999999875

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.85  E-value=7.7e-20  Score=155.66  Aligned_cols=170  Identities=19%  Similarity=0.254  Sum_probs=132.5

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCc-------eeeeecc-----
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGL-------RSVFPSR-----  189 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~-------~~~~~~~-----  189 (299)
                      ++++|...|.+.+||+.+...+.+++.|++.+. ++.+||++.++ ++.|.+|++||+.-.       ...+..+     
T Consensus       426 ~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL  505 (888)
T KOG0306|consen  426 YIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL  505 (888)
T ss_pred             eEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE
Confidence            333333333333333333333333344666665 99999999999 999999999997521       1111111     


Q ss_pred             --CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCce
Q 022303          190 --EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQR  266 (299)
Q Consensus       190 --~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~  266 (299)
                        +..+ .++.++|++.+++.+--|+++++|-+++-+.--.+.+|.-||.||..+|| ++++|||.|.+|+||-+.=|.|
T Consensus       506 el~ddv-L~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC  584 (888)
T KOG0306|consen  506 ELEDDV-LCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC  584 (888)
T ss_pred             eccccE-EEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh
Confidence              1122 24678899999999999999999999999888888899999999999999 9999999999999999999999


Q ss_pred             EEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          267 VATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       267 ~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      -+.+-.|.+  .|.++.|-|....++++|-
T Consensus       585 HKS~fAHdD--Svm~V~F~P~~~~FFt~gK  612 (888)
T KOG0306|consen  585 HKSFFAHDD--SVMSVQFLPKTHLFFTCGK  612 (888)
T ss_pred             hhhhhcccC--ceeEEEEcccceeEEEecC
Confidence            999999999  8999999999999998874

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.85  E-value=6.5e-20  Score=161.85  Aligned_cols=184  Identities=16%  Similarity=0.113  Sum_probs=150.7

Q ss_pred             ccccCeeEEEe-cCC-EEEEEe--CCCcEEEEecCC------------ceeEEEecCCCceeE-EEEecCCCEEE-EEcC
Q 022303          110 AHSVGVDQCRM-KRG-LILTGV--GDKVMRLWSLEG------------YKCVEEYSLPNAASL-VDFDFDESKIV-GLIG  171 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~-~l~s~~--~dg~i~iwd~~~------------~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d  171 (299)
                      .+...|.++.. |++ .++||+  .||.+.+|+.+.            .+.+.+...|...+. +.|++||++|| |+.|
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            34567888988 677 999999  999999998652            223445556655554 88999999999 9999


Q ss_pred             CeEEEEecCC-----------c---------eeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc
Q 022303          172 TRICIWRRNG-----------L---------RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM  231 (299)
Q Consensus       172 ~~i~v~d~~~-----------~---------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  231 (299)
                      +.|.+|+...           +         ..++..|.+.+.. ++|+|++.++++++.|++|.+||.++.+.+..+.+
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~D-v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~  169 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLD-VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG  169 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccce-eccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence            9999999872           0         0344556665554 48999999999999999999999999999999999


Q ss_pred             cCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCC----CCcEEEEEccCCCCeEEee
Q 022303          232 HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDC----TGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       232 ~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~i~~~~~s~~g~~l~s~  294 (299)
                      |.+.|..+.|+|- ++||+-+.|++|+||.+.+-...+.+..+.+    ...+..+.|||||++|++.
T Consensus       170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~  237 (942)
T KOG0973|consen  170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP  237 (942)
T ss_pred             ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence            9999999999998 9999999999999999887667777655443    2368899999999999975

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.84  E-value=1.3e-19  Score=142.89  Aligned_cols=176  Identities=18%  Similarity=0.257  Sum_probs=137.3

Q ss_pred             ccccCeeEEEe---cCC-EEEEEeCCCcEEEEecCC----------------ceeEEEecCCCc-eeEEEEec--CCCEE
Q 022303          110 AHSVGVDQCRM---KRG-LILTGVGDKVMRLWSLEG----------------YKCVEEYSLPNA-ASLVDFDF--DESKI  166 (299)
Q Consensus       110 ~h~~~i~~~~~---~~~-~l~s~~~dg~i~iwd~~~----------------~~~~~~~~~~~~-~~~~~~~~--~~~~l  166 (299)
                      .|.+.++.+..   .+. +.++=+..|.|.||++..                .+++.++.+|.. .+.++|+|  .|.++
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            57777777654   444 888889999999999742                246677777754 45599998  33333


Q ss_pred             EEEcCCeEEEEecCCce-----eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcc---eeeeccccCCcee
Q 022303          167 VGLIGTRICIWRRNGLR-----SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK---CSQIIRMHCAPVT  237 (299)
Q Consensus       167 ~~~~d~~i~v~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~i~  237 (299)
                      .|..-+.|++|...++.     ..+..|...+. -++|+|.... |++|+.||+|+|||++.+.   ++.. +.|.+-|+
T Consensus       229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVE-DLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN  306 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVE-DLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN  306 (440)
T ss_pred             cCccccceEeeeeccCceeecCccccccccchh-hhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence            36667899999988764     33445554443 3588888766 8999999999999999873   3333 68999999


Q ss_pred             EEEeCCC-CeEEEEeCCCcEEEEeCCC---CceEEEeeccCCCCcEEEEEccCCCC
Q 022303          238 SLSLSED-QLIISGSSLGSIAISGLSS---DQRVATLRSTDCTGHIICLMYPQFLH  289 (299)
Q Consensus       238 ~~~~~~~-~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~i~~~~~s~~g~  289 (299)
                      .|.|+.. .+||+|+.||+++|||+++   ++++.+++.|..  +|+++.|+|...
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~--pItsieW~p~e~  360 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA--PITSIEWHPHED  360 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC--CeeEEEeccccC
Confidence            9999988 8999999999999999986   678999999998  999999999644

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=3.8e-19  Score=136.90  Aligned_cols=231  Identities=12%  Similarity=0.129  Sum_probs=164.1

Q ss_pred             CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCcee-eEEeeccccCeeEE
Q 022303           40 GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRID-IDQWKAHSVGVDQC  118 (299)
Q Consensus        40 ~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~-~~~~~~h~~~i~~~  118 (299)
                      +|.++|+|+.|.+.|+.+|+                ...|.++++|..   .++      .|... ...++.|.+.|..+
T Consensus        11 ~h~DlihdVs~D~~GRRmAt----------------CSsDq~vkI~d~---~~~------s~~W~~Ts~Wrah~~Si~rV   65 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMAT----------------CSSDQTVKIWDS---TSD------SGTWSCTSSWRAHDGSIWRV   65 (361)
T ss_pred             CCcceeeeeeecccCceeee----------------ccCCCcEEEEec---cCC------CCceEEeeeEEecCCcEEEE
Confidence            79999999999999999998                557888899842   111      22222 45668999999999


Q ss_pred             Ee-cCC---EEEEEeCCCcEEEEecCCc---------eeEEEec-CCCceeEEEEecC--CCEEE-EEcCCeEEEEecCC
Q 022303          119 RM-KRG---LILTGVGDKVMRLWSLEGY---------KCVEEYS-LPNAASLVDFDFD--ESKIV-GLIGTRICIWRRNG  181 (299)
Q Consensus       119 ~~-~~~---~l~s~~~dg~i~iwd~~~~---------~~~~~~~-~~~~~~~~~~~~~--~~~l~-~~~d~~i~v~d~~~  181 (299)
                      .| +++   .+++++.|++++||.=...         ....++. ....+..+.|.|.  |-.++ ++.||.++||+...
T Consensus        66 ~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d  145 (361)
T KOG2445|consen   66 VWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD  145 (361)
T ss_pred             EecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence            99 433   8999999999999975211         1222333 3445666999885  45577 99999999999865


Q ss_pred             ce--------eeee----ccC--CccceeeeeccC---CCeEEEecCC-----CcEEEEEcCCc----ceeeeccccCCc
Q 022303          182 LR--------SVFP----SRE--GTFMKGLCMRYF---DPEAVVGCED-----GTARVFDMYSR----KCSQIIRMHCAP  235 (299)
Q Consensus       182 ~~--------~~~~----~~~--~~~~~~~~~~~~---~~~l~s~~~d-----~~i~iwd~~~~----~~~~~~~~~~~~  235 (299)
                      ..        ..+.    .+.  .....++.|++.   .+.|+.|+.+     +.+.||.....    ..+.++..|..+
T Consensus       146 p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp  225 (361)
T KOG2445|consen  146 PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP  225 (361)
T ss_pred             ccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc
Confidence            42        1111    111  112234555543   3447777655     47888876543    245566689999


Q ss_pred             eeEEEeCCC-----CeEEEEeCCCcEEEEeCCC--------------------CceEEEeeccCCCCcEEEEEccCCCCe
Q 022303          236 VTSLSLSED-----QLIISGSSLGSIAISGLSS--------------------DQRVATLRSTDCTGHIICLMYPQFLHM  290 (299)
Q Consensus       236 i~~~~~~~~-----~~l~~~~~dg~i~iwd~~~--------------------~~~~~~~~~~~~~~~i~~~~~s~~g~~  290 (299)
                      |++++|.|+     .+||+++.|| |+||.+..                    -+.+..+..|..  +|+.+.|+-.|..
T Consensus       226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~--~VWrv~wNmtGti  302 (361)
T KOG2445|consen  226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG--EVWRVRWNMTGTI  302 (361)
T ss_pred             ceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC--ceEEEEEeeeeeE
Confidence            999999996     4799999999 99999872                    123455667776  9999999999999


Q ss_pred             EEeeeccc
Q 022303          291 LFFLCFLP  298 (299)
Q Consensus       291 l~s~s~~~  298 (299)
                      |++.+.-|
T Consensus       303 LsStGdDG  310 (361)
T KOG2445|consen  303 LSSTGDDG  310 (361)
T ss_pred             EeecCCCc
Confidence            99887643

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=4.6e-20  Score=157.42  Aligned_cols=189  Identities=13%  Similarity=0.154  Sum_probs=149.9

Q ss_pred             eEEeeccccCeeEEEe-c--CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCC-CEEE-EEcCCeEEEEe
Q 022303          105 IDQWKAHSVGVDQCRM-K--RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDE-SKIV-GLIGTRICIWR  178 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~-~~l~-~~~d~~i~v~d  178 (299)
                      +..|..|+-.|+++.| +  ..+|++||.||+|++||++..+...++.+....+. +.|+|.. ..++ +...|.+.+||
T Consensus       126 l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWD  205 (839)
T KOG0269|consen  126 LTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWD  205 (839)
T ss_pred             hhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEee
Confidence            4567899999999999 3  33999999999999999999998888888766665 9999854 4566 88889999999


Q ss_pred             cCCce---eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc-ccCCceeEEEeCCC--CeEEEEeC
Q 022303          179 RNGLR---SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLSED--QLIISGSS  252 (299)
Q Consensus       179 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~--~~l~~~~~  252 (299)
                      ++.+.   ..+..|.+.+. ++.|+|+..+||+|+.|+.|+|||..+.+...... ....++.++.|-|+  ..|++++.
T Consensus       206 lRqp~r~~~k~~AH~GpV~-c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm  284 (839)
T KOG0269|consen  206 LRQPDRCEKKLTAHNGPVL-CLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM  284 (839)
T ss_pred             ccCchhHHHHhhcccCceE-EEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc
Confidence            99875   45566777655 56899988889999999999999998655432222 34578999999998  56777764


Q ss_pred             --CCcEEEEeCCCCc-eEEEeeccCCCCcEEEEEccC-CCCeEEeeec
Q 022303          253 --LGSIAISGLSSDQ-RVATLRSTDCTGHIICLMYPQ-FLHMLFFLCF  296 (299)
Q Consensus       253 --dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~-~g~~l~s~s~  296 (299)
                        |-.|+|||++..- +..++..|..  .++.++|.. |-..|.++|-
T Consensus       285 v~dtsV~VWDvrRPYIP~~t~~eH~~--~vt~i~W~~~d~~~l~s~sK  330 (839)
T KOG0269|consen  285 VVDTSVHVWDVRRPYIPYATFLEHTD--SVTGIAWDSGDRINLWSCSK  330 (839)
T ss_pred             cccceEEEEeeccccccceeeeccCc--cccceeccCCCceeeEeecC
Confidence              8899999998653 4677888887  789999976 3445666654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=2e-19  Score=151.44  Aligned_cols=227  Identities=13%  Similarity=0.119  Sum_probs=180.2

Q ss_pred             cchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccc-cCeeEEEe
Q 022303           42 FDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHS-VGVDQCRM  120 (299)
Q Consensus        42 ~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~-~~i~~~~~  120 (299)
                      +..|+|+|++++.+.||.                ...++.+.+|..  ..+...         ..++.++. ..|-+++|
T Consensus        25 Ps~I~slA~s~kS~~lAv----------------sRt~g~IEiwN~--~~~w~~---------~~vi~g~~drsIE~L~W   77 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAV----------------SRTDGNIEIWNL--SNNWFL---------EPVIHGPEDRSIESLAW   77 (691)
T ss_pred             ccceEEEEEeccCCceee----------------eccCCcEEEEcc--CCCcee---------eEEEecCCCCceeeEEE
Confidence            467889999999998885                336777888832  332222         34456665 46888999


Q ss_pred             c-CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeee----ccCCcc
Q 022303          121 K-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFP----SREGTF  193 (299)
Q Consensus       121 ~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~----~~~~~~  193 (299)
                      . ++.|++.+.+|.|.-||+.+++....++.....+. ++.+|.+..++ ++.||.++.++...+...+.    ..++..
T Consensus        78 ~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRv  157 (691)
T KOG2048|consen   78 AEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRV  157 (691)
T ss_pred             ccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceE
Confidence            6 55999999999999999999999999987665554 99999999988 99999888888877764333    333333


Q ss_pred             ceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc--------ccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCc
Q 022303          194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR--------MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQ  265 (299)
Q Consensus       194 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  265 (299)
                      . .+.|++++..+++|+.||.|++||..++..+....        ....-|+++.|-.+..|++|.+.|+|.+||...+.
T Consensus       158 L-slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT  236 (691)
T KOG2048|consen  158 L-SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT  236 (691)
T ss_pred             E-EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc
Confidence            3 45788888889999999999999999887765221        12335778888777889999999999999999999


Q ss_pred             eEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          266 RVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       266 ~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      +++.+..|..  .|.+++.++++.++++++..|
T Consensus       237 LiqS~~~h~a--dVl~Lav~~~~d~vfsaGvd~  267 (691)
T KOG2048|consen  237 LIQSHSCHDA--DVLALAVADNEDRVFSAGVDP  267 (691)
T ss_pred             hhhhhhhhhc--ceeEEEEcCCCCeEEEccCCC
Confidence            9999999998  899999999999999988654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.83  E-value=1.6e-19  Score=142.38  Aligned_cols=195  Identities=15%  Similarity=0.152  Sum_probs=148.8

Q ss_pred             eeeEEeeccccCeeEEEec---CCEEEEEeCCCcEEEEecCCceeEE---EecCCCceeE-EEEecCCCEE-E-EEcCCe
Q 022303          103 IDIDQWKAHSVGVDQCRMK---RGLILTGVGDKVMRLWSLEGYKCVE---EYSLPNAASL-VDFDFDESKI-V-GLIGTR  173 (299)
Q Consensus       103 ~~~~~~~~h~~~i~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~-~~~~~~~~~l-~-~~~d~~  173 (299)
                      .++.++.+|...=+.+.|+   .+.|+||.--+.|++|...++....   -+.+|...+- ++|+|..+.+ + |+.||+
T Consensus       202 ~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs  281 (440)
T KOG0302|consen  202 RPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS  281 (440)
T ss_pred             CceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce
Confidence            3478889999999999994   3489999999999999999876432   3445766666 9999987665 4 999999


Q ss_pred             EEEEecCCce----eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCC---cceeeeccccCCceeEEEeCCC--
Q 022303          174 ICIWRRNGLR----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS---RKCSQIIRMHCAPVTSLSLSED--  244 (299)
Q Consensus       174 i~v~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~i~~~~~~~~--  244 (299)
                      |+|||++...    ...+.|.+.++ ++.|+..-+.|++|++||+++|||+++   ++++.+|+-|..+|+++.|+|.  
T Consensus       282 IrIWDiRs~~~~~~~~~kAh~sDVN-VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~  360 (440)
T KOG0302|consen  282 IRIWDIRSGPKKAAVSTKAHNSDVN-VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED  360 (440)
T ss_pred             EEEEEecCCCccceeEeeccCCcee-eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC
Confidence            9999999763    23355555444 678888888899999999999999986   5678899999999999999986  


Q ss_pred             CeEEEEeCCCcEEEEeCCCCc----------------eEEEeeccCCCCcEEEEEccCCC-CeEEeeeccc
Q 022303          245 QLIISGSSLGSIAISGLSSDQ----------------RVATLRSTDCTGHIICLMYPQFL-HMLFFLCFLP  298 (299)
Q Consensus       245 ~~l~~~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~~~i~~~~~s~~g-~~l~s~s~~~  298 (299)
                      ..|++++.|.+|.+||+..-.                +-+.+-.|.+...+-.+.|++.- -+|++.+.-+
T Consensus       361 s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  361 SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence            789999999999999985311                11223334333368888999864 3555554433

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.83  E-value=2.4e-19  Score=137.65  Aligned_cols=228  Identities=14%  Similarity=0.113  Sum_probs=163.3

Q ss_pred             CccchhhHHHhhh-hHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEE
Q 022303           40 GFFDLVRCSAVCK-SWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQC  118 (299)
Q Consensus        40 ~h~~~v~~~~~~~-~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~  118 (299)
                      ++.|.|.+++||| .+..++.                ..-|+++|+|..  ..+        |...-+....|.++|.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A----------------~SWD~tVR~wev--q~~--------g~~~~ka~~~~~~PvL~v   78 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAA----------------GSWDGTVRIWEV--QNS--------GQLVPKAQQSHDGPVLDV   78 (347)
T ss_pred             CcccchheeEeccccCceEEe----------------cccCCceEEEEE--ecC--------CcccchhhhccCCCeEEE
Confidence            6789999999999 4555532                235788888833  221        111223447899999999


Q ss_pred             Eec-CC-EEEEEeCCCcEEEEecCCceeEEEecCCC-ceeEEEEecCCC--EEE-EEcCCeEEEEecCCceeeeeccCCc
Q 022303          119 RMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDES--KIV-GLIGTRICIWRRNGLRSVFPSREGT  192 (299)
Q Consensus       119 ~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~--~l~-~~~d~~i~v~d~~~~~~~~~~~~~~  192 (299)
                      +|. ++ .+++|+.|+.+++||+.+++... +..|+ ++..+.|-+...  .|+ |+.|+++++||.+....+....--.
T Consensus        79 ~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~-v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe  157 (347)
T KOG0647|consen   79 CWSDDGSKVFSGGCDKQAKLWDLASGQVSQ-VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE  157 (347)
T ss_pred             EEccCCceEEeeccCCceEEEEccCCCeee-eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc
Confidence            994 44 99999999999999999996554 44454 455588877665  677 9999999999999775433222111


Q ss_pred             cceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeec--cccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC--ceE
Q 022303          193 FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII--RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD--QRV  267 (299)
Q Consensus       193 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~--~~~  267 (299)
                        .+.+..-..+.++.+..+..|.+|+++++......  ..-.-.+.+++..++ +..+.|+-+|.+.|..+..+  +.-
T Consensus       158 --RvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n  235 (347)
T KOG0647|consen  158 --RVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN  235 (347)
T ss_pred             --eeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc
Confidence              13456666777888999999999999865432211  123456889998888 77799999999999988775  445


Q ss_pred             EEeeccCC-------CCcEEEEEccCCCCeEEeeec
Q 022303          268 ATLRSTDC-------TGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       268 ~~~~~~~~-------~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      .+++.|..       -.+|++++|+|.-..|++++-
T Consensus       236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs  271 (347)
T KOG0647|consen  236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS  271 (347)
T ss_pred             eeEEEeccCCCCCCceEEecceEeecccceEEEecC
Confidence            66666653       136888999997777777654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=2.2e-19  Score=144.28  Aligned_cols=186  Identities=16%  Similarity=0.197  Sum_probs=141.5

Q ss_pred             eccccCeeEEEec---CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCE-EE-EEcCCeEEEEecCCc
Q 022303          109 KAHSVGVDQCRMK---RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESK-IV-GLIGTRICIWRRNGL  182 (299)
Q Consensus       109 ~~h~~~i~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~-l~-~~~d~~i~v~d~~~~  182 (299)
                      .+|++.|..+.|.   .+.|++||.|.+|++||+.++++..++..|+..+. +.|+|.... |+ |+.|++|.+.|.+..
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~  319 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP  319 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence            4799999999883   33999999999999999999999999997765555 999997654 55 999999999999953


Q ss_pred             e--eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC--CeEEEEeCCCcE
Q 022303          183 R--SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSI  256 (299)
Q Consensus       183 ~--~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i  256 (299)
                      .  ...-...+.+. .+.|.+..+. ++++..||+++-+|+|+. +++.+++.|.++|.++++++.  .++++++.|+.+
T Consensus       320 ~~s~~~wk~~g~VE-kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~V  398 (463)
T KOG0270|consen  320 SNSGKEWKFDGEVE-KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVV  398 (463)
T ss_pred             cccCceEEeccceE-EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceE
Confidence            2  11122223333 3588888777 788899999999999974 889999999999999999987  799999999999


Q ss_pred             EEEeCCCCceEEEeeccCCCCcEEEEEccCCCCe-EEeee
Q 022303          257 AISGLSSDQRVATLRSTDCTGHIICLMYPQFLHM-LFFLC  295 (299)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~s~s  295 (299)
                      ++|++.....-.........+...|+++.|+-.+ |+.|+
T Consensus       399 klw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG  438 (463)
T KOG0270|consen  399 KLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGG  438 (463)
T ss_pred             EEEeecCCCCcccccccccccceeecccCCCcceEEEecC
Confidence            9999875433211111111125677778876543 44444

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.83  E-value=5.9e-19  Score=151.84  Aligned_cols=180  Identities=14%  Similarity=0.159  Sum_probs=150.7

Q ss_pred             cCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEe---cCCCcee-EEEEecCCCEEE-EEcCCeEEEEecCCceee
Q 022303          113 VGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEY---SLPNAAS-LVDFDFDESKIV-GLIGTRICIWRRNGLRSV  185 (299)
Q Consensus       113 ~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~  185 (299)
                      ..+++++. +.| +.+.|...|+|-+|++++|-....|   ..|+..+ .++.+.-++.++ ++.+|.+.+||+.+....
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence            45666666 444 8889999999999999999988888   3555444 499988888888 999999999999987633


Q ss_pred             eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC
Q 022303          186 FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD  264 (299)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~  264 (299)
                      -...-+.....+..+.....++.+.+|-.|+++|..+.+.++.|.+|.+.|++++|+|| ++|++++.|++|++||+.++
T Consensus       529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~  608 (910)
T KOG1539|consen  529 KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG  608 (910)
T ss_pred             eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence            33333333334455555666888899999999999999999999999999999999999 99999999999999999999


Q ss_pred             ceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          265 QRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       265 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      .++-.+....   +..++.|+|+|.+||+..
T Consensus       609 ~lID~~~vd~---~~~sls~SPngD~LAT~H  636 (910)
T KOG1539|consen  609 TLIDGLLVDS---PCTSLSFSPNGDFLATVH  636 (910)
T ss_pred             ceeeeEecCC---cceeeEECCCCCEEEEEE
Confidence            9998887666   899999999999999875

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.82  E-value=4e-20  Score=156.77  Aligned_cols=212  Identities=16%  Similarity=0.209  Sum_probs=163.5

Q ss_pred             hhhhhhhhhccccceeecCcee--eE-----------EeeccccCeeEEEecC----C-EEEEEeCCCcEEEEecC-Cce
Q 022303           83 RLHLEELAMKHHRFALEEGRID--ID-----------QWKAHSVGVDQCRMKR----G-LILTGVGDKVMRLWSLE-GYK  143 (299)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~g~~~--~~-----------~~~~h~~~i~~~~~~~----~-~l~s~~~dg~i~iwd~~-~~~  143 (299)
                      |+=++++..+|+++.|+.|..-  ++           ...+|...|.|+.++.    . +|++++.|.-|+++|+. +..
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~  538 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD  538 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence            3444455666666666665432  22           2278999999998832    2 89999999999999986 456


Q ss_pred             eEEEecCCCceeE-EEEecCC--CEEE-EEcCCeEEEEecCCc--eeeeeccCCc----cceeeeeccCCCeEEEecCCC
Q 022303          144 CVEEYSLPNAASL-VDFDFDE--SKIV-GLIGTRICIWRRNGL--RSVFPSREGT----FMKGLCMRYFDPEAVVGCEDG  213 (299)
Q Consensus       144 ~~~~~~~~~~~~~-~~~~~~~--~~l~-~~~d~~i~v~d~~~~--~~~~~~~~~~----~~~~~~~~~~~~~l~s~~~d~  213 (299)
                      +++++..|...+. +.|..++  ..++ ++.|+.|.+--.+..  ...+..+...    ...-+++.|...++++++.|.
T Consensus       539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDr  618 (1080)
T KOG1408|consen  539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDR  618 (1080)
T ss_pred             hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEeccc
Confidence            7788888876655 8887766  5566 778877755433311  1333332221    122367888888899999999


Q ss_pred             cEEEEEcCCcceeeecc---ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCC
Q 022303          214 TARVFDMYSRKCSQIIR---MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLH  289 (299)
Q Consensus       214 ~i~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  289 (299)
                      .|+|||+.+++..+.|+   .|.+....+...|. .|+++.+.|.+|.++|.-+|+++.++.+|.+  .|+.+.|.+|-+
T Consensus       619 nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE--~VTG~kF~nDCk  696 (1080)
T KOG1408|consen  619 NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE--AVTGVKFLNDCK  696 (1080)
T ss_pred             ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch--heeeeeecccch
Confidence            99999999999999997   46677888889998 9999999999999999999999999999999  999999999999


Q ss_pred             eEEeeec
Q 022303          290 MLFFLCF  296 (299)
Q Consensus       290 ~l~s~s~  296 (299)
                      .|++.+-
T Consensus       697 HlISvsg  703 (1080)
T KOG1408|consen  697 HLISVSG  703 (1080)
T ss_pred             hheeecC
Confidence            9998763

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=7.4e-20  Score=156.15  Aligned_cols=178  Identities=14%  Similarity=0.221  Sum_probs=134.1

Q ss_pred             EEEe---cCCEEEEEeCCCcEEEEecCC---ceeEEEecCCCceeE-EEEecCCCE-EE-EEcCCeEEEEecCCcee--e
Q 022303          117 QCRM---KRGLILTGVGDKVMRLWSLEG---YKCVEEYSLPNAASL-VDFDFDESK-IV-GLIGTRICIWRRNGLRS--V  185 (299)
Q Consensus       117 ~~~~---~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~-~~~~~~~~~-l~-~~~d~~i~v~d~~~~~~--~  185 (299)
                      .|.|   .+++|+|++..|.|.+||+..   .+.+..|..|+..+. ++|++.... |+ |+.||.|+.||++....  .
T Consensus        92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t  171 (839)
T KOG0269|consen   92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST  171 (839)
T ss_pred             hcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc
Confidence            3556   344999999999999999986   556667777765554 999886654 55 99999999999997753  3


Q ss_pred             eeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022303          186 FPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS  262 (299)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~  262 (299)
                      +......+. -+.|+|..++ ++++.+.|.+.+||++.. ++...+..|.++|.++.|+|+ .+||||+.|+.|+|||..
T Consensus       172 ~~~nSESiR-DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t  250 (839)
T KOG0269|consen  172 FRSNSESIR-DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT  250 (839)
T ss_pred             ccccchhhh-ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence            333222222 2466666554 999999999999999864 345677799999999999999 999999999999999997


Q ss_pred             CCceEEEeeccCCCCcEEEEEccCCCC-eEEeeec
Q 022303          263 SDQRVATLRSTDCTGHIICLMYPQFLH-MLFFLCF  296 (299)
Q Consensus       263 ~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~s~s~  296 (299)
                      +++.-.....+... +|.+++|-|... .||++++
T Consensus       251 ~~~~~~~~tInTia-pv~rVkWRP~~~~hLAtcsm  284 (839)
T KOG0269|consen  251 DSRAKPKHTINTIA-PVGRVKWRPARSYHLATCSM  284 (839)
T ss_pred             CCCccceeEEeecc-eeeeeeeccCccchhhhhhc
Confidence            65543333223322 899999999765 4666665

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.81  E-value=1.4e-18  Score=141.79  Aligned_cols=177  Identities=14%  Similarity=0.254  Sum_probs=148.0

Q ss_pred             eeccccCeeEEEe--cCCEEEEEeCCCcEEEEecCCceeEEEecCC-Ccee-EEEEecCCCEEE--EEcCCeEEEEecCC
Q 022303          108 WKAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP-NAAS-LVDFDFDESKIV--GLIGTRICIWRRNG  181 (299)
Q Consensus       108 ~~~h~~~i~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~--~~~d~~i~v~d~~~  181 (299)
                      +++|++.|+++.+  .|.||++++..|.|.|..+.++.....|..+ ...+ .+.+++..+.++  ++.+|.|.+||+.+
T Consensus       117 lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g  196 (673)
T KOG4378|consen  117 LKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG  196 (673)
T ss_pred             ccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC
Confidence            3899999999999  4559999999999999999999888888766 4455 499999988866  88899999999998


Q ss_pred             ceeeee---ccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcE
Q 022303          182 LRSVFP---SREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSI  256 (299)
Q Consensus       182 ~~~~~~---~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i  256 (299)
                      ...++.   .|..+ ...+||+|.++. |++.+.|.+|.+||.+..+....+ ....+...++|.++ .+|+.|+..|.|
T Consensus       197 ~sp~~~~~~~HsAP-~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~  274 (673)
T KOG4378|consen  197 MSPIFHASEAHSAP-CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL-TYSHPLSTVAFSECGTYLCAGNSKGEL  274 (673)
T ss_pred             CCcccchhhhccCC-cCcceecCCccceEEEecccceEEEeeccccccccee-eecCCcceeeecCCceEEEeecCCceE
Confidence            764433   33333 335799998877 788999999999999987777666 55788999999999 899999999999


Q ss_pred             EEEeCCC-CceEEEeeccCCCCcEEEEEccCCC
Q 022303          257 AISGLSS-DQRVATLRSTDCTGHIICLMYPQFL  288 (299)
Q Consensus       257 ~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~g  288 (299)
                      ..||++. ..++..+..|..  .|++++|-|.-
T Consensus       275 i~YD~R~~k~Pv~v~sah~~--sVt~vafq~s~  305 (673)
T KOG4378|consen  275 IAYDMRSTKAPVAVRSAHDA--SVTRVAFQPSP  305 (673)
T ss_pred             EEEecccCCCCceEeeeccc--ceeEEEeeecc
Confidence            9999986 457888888888  89999998764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.81  E-value=2.4e-19  Score=146.39  Aligned_cols=182  Identities=15%  Similarity=0.181  Sum_probs=144.8

Q ss_pred             ccccCeeEEEecC--CEEEEEeCCCcEEEEecCCc---eeEEEec---CCCceeEEEEecCCCEEE-EEcCCeEEEEecC
Q 022303          110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGY---KCVEEYS---LPNAASLVDFDFDESKIV-GLIGTRICIWRRN  180 (299)
Q Consensus       110 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iwd~~~~---~~~~~~~---~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~  180 (299)
                      .|..-|.++..++  .+++||+. |.|+|||+...   .++..+.   ..+.+.++...||++.|+ |+.-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            5777777777733  38888886 78999998742   2343333   233445588999999988 8888899999998


Q ss_pred             Cceeeeec-cC--CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcE
Q 022303          181 GLRSVFPS-RE--GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSI  256 (299)
Q Consensus       181 ~~~~~~~~-~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i  256 (299)
                      .+...++. ..  +.....++++++.+..+++..||.|.|||+.+...++.|++|.+.+.||.++++ ..|-+|+-|.+|
T Consensus       496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv  575 (705)
T KOG0639|consen  496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV  575 (705)
T ss_pred             CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence            77533222 11  223345788899998899999999999999999999999999999999999999 889999999999


Q ss_pred             EEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          257 AISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      |.||+++++.++...-..   .|.++..+|++.+|+.|-
T Consensus       576 RcWDlregrqlqqhdF~S---QIfSLg~cP~~dWlavGM  611 (705)
T KOG0639|consen  576 RCWDLREGRQLQQHDFSS---QIFSLGYCPTGDWLAVGM  611 (705)
T ss_pred             eehhhhhhhhhhhhhhhh---hheecccCCCccceeeec
Confidence            999999998776554443   799999999999999874

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2.1e-18  Score=133.52  Aligned_cols=190  Identities=14%  Similarity=0.169  Sum_probs=144.8

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeE--EEec---CCCceeEEEEecCCCEEE--EEcCCeEE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCV--EEYS---LPNAASLVDFDFDESKIV--GLIGTRIC  175 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~--~~~~---~~~~~~~~~~~~~~~~l~--~~~d~~i~  175 (299)
                      +.++++|.+.|++++| +++ +|+|++.|++|++|++++....  +.++   .-+....+.|.||.+-++  .-...+++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            5677999999999999 666 9999999999999999864311  1111   112456799999998766  55566999


Q ss_pred             EEecCCce---e--e---ee---ccCCccce--eeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeC
Q 022303          176 IWRRNGLR---S--V---FP---SREGTFMK--GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS  242 (299)
Q Consensus       176 v~d~~~~~---~--~---~~---~~~~~~~~--~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  242 (299)
                      +|.+....   .  .   ..   -+..+...  -+...-.+.++++++.|..|.+||++ |+.++.+......-...+++
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence            99875432   0  0   01   11111111  23556667779999999999999999 99999998777778889999


Q ss_pred             CC-CeEEEEeCCCcEEEEeCC---CC-----ceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          243 ED-QLIISGSSLGSIAISGLS---SD-----QRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       243 ~~-~~l~~~~~dg~i~iwd~~---~~-----~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      |+ +++++++..-.+++|.+-   .|     ..+..+++|..  .|..++|+++.+.+++.|--
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~s--aV~~~aFsn~S~r~vtvSkD  299 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS--AVLAAAFSNSSTRAVTVSKD  299 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchh--heeeeeeCCCcceeEEEecC
Confidence            99 999999999999999863   22     34677889988  99999999999999998754

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=3.3e-18  Score=132.20  Aligned_cols=191  Identities=12%  Similarity=0.153  Sum_probs=154.5

Q ss_pred             eEEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCC--EEE-EEcCCeEEEEecC
Q 022303          105 IDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDES--KIV-GLIGTRICIWRRN  180 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~--~l~-~~~d~~i~v~d~~  180 (299)
                      +..+..|.++|++++.+..++++|+.|-+|+|||+.+.+.+..+-.|...+. +.|.++-.  .|+ |+.||.|.+|+..
T Consensus        36 lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             cccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence            4456899999999999988999999999999999999988888887766655 99988764  555 9999999999998


Q ss_pred             Cce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc----------------------------
Q 022303          181 GLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR----------------------------  230 (299)
Q Consensus       181 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------------------------  230 (299)
                      .-.  ..+..|.+.+. -++++|.+...++.+.|+.++.||+-+|+.-....                            
T Consensus       116 ~W~~~~slK~H~~~Vt-~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~  194 (362)
T KOG0294|consen  116 SWELLKSLKAHKGQVT-DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIY  194 (362)
T ss_pred             CeEEeeeecccccccc-eeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEE
Confidence            764  45677777755 45999999999999999999999986654211110                            


Q ss_pred             -----------ccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEc--cCCCCeEEeeecc
Q 022303          231 -----------MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMY--PQFLHMLFFLCFL  297 (299)
Q Consensus       231 -----------~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~--s~~g~~l~s~s~~  297 (299)
                                 .....+.++.|.....|++|..|+.|.+||.....++..+..|..  .|-++.+  .|++.||+++|..
T Consensus       195 q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~~~~~~~lvTaSSD  272 (362)
T KOG0294|consen  195 QLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYTNPEHEYLVTASSD  272 (362)
T ss_pred             ecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEecCCceEEEEeccC
Confidence                       011235666665558899999999999999999999999999998  8999884  4678999998865


Q ss_pred             c
Q 022303          298 P  298 (299)
Q Consensus       298 ~  298 (299)
                      |
T Consensus       273 G  273 (362)
T KOG0294|consen  273 G  273 (362)
T ss_pred             c
Confidence            5

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=7.7e-18  Score=129.74  Aligned_cols=185  Identities=11%  Similarity=0.094  Sum_probs=142.7

Q ss_pred             ccccCeeEEEec-CC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCcee-ee
Q 022303          110 AHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRS-VF  186 (299)
Q Consensus       110 ~h~~~i~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~-~~  186 (299)
                      ...+.|..+.|. .. .|+.+++||++++||....++...++...+...++|.++...+.|+.||.|+.+|+.++.. .+
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~i   90 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQI   90 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceee
Confidence            446789999994 33 7888889999999999998888888888888889998866666699999999999998864 34


Q ss_pred             eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCce
Q 022303          187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQR  266 (299)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  266 (299)
                      ..|...+. ++...+....+++|+.|++|++||.+.......+.. ...|.++....+ .|++|+.|..+.+||+++.+.
T Consensus        91 gth~~~i~-ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~g~-~LvVg~~~r~v~iyDLRn~~~  167 (323)
T KOG1036|consen   91 GTHDEGIR-CIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVSGN-RLVVGTSDRKVLIYDLRNLDE  167 (323)
T ss_pred             ccCCCceE-EEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEeccCC-EEEEeecCceEEEEEcccccc
Confidence            44544433 456666677799999999999999998666666643 447888887554 688999999999999998765


Q ss_pred             EEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          267 VATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       267 ~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ..+.....-...++++++-|++.-.+++|.-
T Consensus       168 ~~q~reS~lkyqtR~v~~~pn~eGy~~sSie  198 (323)
T KOG1036|consen  168 PFQRRESSLKYQTRCVALVPNGEGYVVSSIE  198 (323)
T ss_pred             hhhhccccceeEEEEEEEecCCCceEEEeec
Confidence            4433222211279999999988878877753

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=5.8e-20  Score=155.75  Aligned_cols=187  Identities=18%  Similarity=0.282  Sum_probs=163.6

Q ss_pred             eeccccCeeEEEe-cC-CEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce
Q 022303          108 WKAHSVGVDQCRM-KR-GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR  183 (299)
Q Consensus       108 ~~~h~~~i~~~~~-~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~  183 (299)
                      +..|...|.++.. .. ..+++|+.|..+-+|.+.....+..+.+|+..+. +.|+++..+|+ |+.+|+|++||+....
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk  103 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK  103 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence            3578889998877 33 3899999999999999887777778888887776 99999999999 9999999999999765


Q ss_pred             --eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEe
Q 022303          184 --SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG  260 (299)
Q Consensus       184 --~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd  260 (299)
                        ..+.++...... +.|+|.+.+.++|+.|+.+.+||.+...+...+.+|...+..+.|+|+ ++++.|++|..++|||
T Consensus       104 ~vrtLtgh~~~~~s-v~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d  182 (825)
T KOG0267|consen  104 IVRTLTGHLLNITS-VDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWD  182 (825)
T ss_pred             hhhhhhccccCcce-eeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeec
Confidence              445555555543 469999999999999999999999988889999999999999999999 8999999999999999


Q ss_pred             CCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          261 LSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +..|+.+..|+.|..  .+..+.|+|..-+|++||.-
T Consensus       183 ~~agk~~~ef~~~e~--~v~sle~hp~e~Lla~Gs~d  217 (825)
T KOG0267|consen  183 LTAGKLSKEFKSHEG--KVQSLEFHPLEVLLAPGSSD  217 (825)
T ss_pred             ccccccccccccccc--cccccccCchhhhhccCCCC
Confidence            999999999999998  89999999999888888753

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=6e-18  Score=136.95  Aligned_cols=186  Identities=17%  Similarity=0.186  Sum_probs=145.4

Q ss_pred             cccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCc----
Q 022303          111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGL----  182 (299)
Q Consensus       111 h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~----  182 (299)
                      -.++|.++.- +++ +|+.|+-.|.|++|.+.+|.++..+..|-+.+. +.|+.|+.+++ ++.||.|.+|.+..-    
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~  159 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD  159 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence            4567899866 677 666666999999999999999999988865554 99999999999 999999999987532    


Q ss_pred             -------eeeeeccCCcccee-eeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCC
Q 022303          183 -------RSVFPSREGTFMKG-LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL  253 (299)
Q Consensus       183 -------~~~~~~~~~~~~~~-~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d  253 (299)
                             ...+..|.-.+... +.......++++++.|.++++||+..+..+..+ ....++.+++++|. ..+..|+.+
T Consensus       160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-~fp~si~av~lDpae~~~yiGt~~  238 (476)
T KOG0646|consen  160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-TFPSSIKAVALDPAERVVYIGTEE  238 (476)
T ss_pred             cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE-ecCCcceeEEEcccccEEEecCCc
Confidence                   13333333332221 122223456999999999999999999998888 45778999999998 899999999


Q ss_pred             CcEEEEeCCC----------------CceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          254 GSIAISGLSS----------------DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       254 g~i~iwd~~~----------------~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      |.|.+.++.+                +..+..+.+|.+..+|+|++.+-||..|++|+--
T Consensus       239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d  298 (476)
T KOG0646|consen  239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED  298 (476)
T ss_pred             ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence            9999987743                2245556677664489999999999999999743

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2.6e-18  Score=149.33  Aligned_cols=231  Identities=10%  Similarity=-0.004  Sum_probs=176.7

Q ss_pred             CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEE
Q 022303           40 GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCR  119 (299)
Q Consensus        40 ~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~  119 (299)
                      .|.+..+.+++.+++++|.+                ...|+.++.|..- .....          -.++.-+...|.+++
T Consensus        11 aht~G~t~i~~d~~gefi~t----------------cgsdg~ir~~~~~-sd~e~----------P~ti~~~g~~v~~ia   63 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICT----------------CGSDGDIRKWKTN-SDEEE----------PETIDISGELVSSIA   63 (933)
T ss_pred             hccCceEEEEEcCCCCEEEE----------------ecCCCceEEeecC-CcccC----------CchhhccCceeEEEe
Confidence            56666677778888887776                3356666766220 00011          112233777888888


Q ss_pred             ecCCEEEEEeCCCcEEEEecCCceeEEEec-CCCceeEEEEecCCCEEE-EEcCCeEEEEecCCc--eeeeeccCCccce
Q 022303          120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIV-GLIGTRICIWRRNGL--RSVFPSREGTFMK  195 (299)
Q Consensus       120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~--~~~~~~~~~~~~~  195 (299)
                      ...++|++|+.+++|.+|.+..++.-..+. ..-+...++++.+|++++ |+.|-.|++.+....  +..+..|.+.+. 
T Consensus        64 ~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl-  142 (933)
T KOG1274|consen   64 CYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL-  142 (933)
T ss_pred             ecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCcee-
Confidence            877799999999999999998876543222 223455699999999999 889999999998765  467778887766 


Q ss_pred             eeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc--------cCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCce
Q 022303          196 GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM--------HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQR  266 (299)
Q Consensus       196 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~  266 (299)
                      .+.+.|.+..|++.+.||.|++||+.++.+...+..        ....+..++|+|+ ..++....|+.|++|+....+.
T Consensus       143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~  222 (933)
T KOG1274|consen  143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL  222 (933)
T ss_pred             eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence            457888888899999999999999999877665541        2456788999999 8889999999999999999998


Q ss_pred             EEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          267 VATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       267 ~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      ...+........+..+.|+|+|+|||++++.+
T Consensus       223 ~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g  254 (933)
T KOG1274|consen  223 QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG  254 (933)
T ss_pred             heeecccccccceEEEEEcCCCcEEeeeccCC
Confidence            88887655443699999999999999998754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.79  E-value=6.3e-18  Score=139.12  Aligned_cols=244  Identities=12%  Similarity=0.054  Sum_probs=161.2

Q ss_pred             CCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHh-hhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccce
Q 022303           19 KPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAII-NRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFA   97 (299)
Q Consensus        19 ~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~-~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (299)
                      ..+..+..|+.++...+..+..+. .+.+++++|++..++ +                ...+..+++|  ++...     
T Consensus         8 ~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~----------------~~~~~~v~~~--d~~~~-----   63 (300)
T TIGR03866         8 EKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVC----------------ASDSDTIQVI--DLATG-----   63 (300)
T ss_pred             cCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEE----------------ECCCCeEEEE--ECCCC-----
Confidence            345678888887766555554443 366788999987653 3                1133444555  21111     


Q ss_pred             eecCceeeEEeeccccCeeEEEe-cCC-EE-EEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCC-
Q 022303           98 LEEGRIDIDQWKAHSVGVDQCRM-KRG-LI-LTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGT-  172 (299)
Q Consensus        98 l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~-  172 (299)
                           .....+..+.. +..+.+ +++ .+ ++++.|+.+++||+.+.+.+..+..+.....++++|+++.++ +..++ 
T Consensus        64 -----~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~  137 (300)
T TIGR03866        64 -----EVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTN  137 (300)
T ss_pred             -----cEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCC
Confidence                 11222333333 345666 555 45 455678999999999988888777555556699999999988 65554 


Q ss_pred             eEEEEecCCceeeeeccCCccceeeeeccCCCeEE-EecCCCcEEEEEcCCcceeeecccc-------CCceeEEEeCCC
Q 022303          173 RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCSQIIRMH-------CAPVTSLSLSED  244 (299)
Q Consensus       173 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~~~~  244 (299)
                      .+.+||..+.........+.....+++++++..++ ++..++.|.+||+++++.+..+..+       ......++|+|+
T Consensus       138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d  217 (300)
T TIGR03866       138 MAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD  217 (300)
T ss_pred             eEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC
Confidence            57788988765332211112223467889988875 4456899999999998876655321       112356889998


Q ss_pred             -CeEE-EEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          245 -QLII-SGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       245 -~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                       ++++ +.+.++.+.+||+++++.+..+... .  .+.+++|+|+|++|++++
T Consensus       218 g~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~--~~~~~~~~~~g~~l~~~~  267 (300)
T TIGR03866       218 GKTAFVALGPANRVAVVDAKTYEVLDYLLVG-Q--RVWQLAFTPDEKYLLTTN  267 (300)
T ss_pred             CCEEEEEcCCCCeEEEEECCCCcEEEEEEeC-C--CcceEEECCCCCEEEEEc
Confidence             6644 4455778999999988877665433 3  789999999999998764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.79  E-value=2.9e-19  Score=145.96  Aligned_cols=259  Identities=11%  Similarity=0.074  Sum_probs=194.4

Q ss_pred             HHhhccCccchhhHHHhhhhHHHHhh----hhhHHHHHHhhhcCCCCCCCch-hhhhhhhhhhccccceeecCcee--eE
Q 022303           34 MIFSSLGFFDLVRCSAVCKSWNAIIN----RCKLLQLLYCKLHGFSNTSGSS-MRLHLEELAMKHHRFALEEGRID--ID  106 (299)
Q Consensus        34 ~i~~~~~h~~~v~~~~~~~~~~~l~~----~~~~w~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~l~~g~~~--~~  106 (299)
                      +....|.|.+.|.++.++..-+.+.|    -+++|++--......+..-|.- -..|+++....++++.|..|+..  +.
T Consensus       411 rq~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastls  490 (705)
T KOG0639|consen  411 RQINTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS  490 (705)
T ss_pred             HhhhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceee
Confidence            44566789999999999999999988    4778987433211111112221 23466666777888888777664  33


Q ss_pred             Eee--ccc-----------cCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCce-eEEEEecCCCEEE-EE
Q 022303          107 QWK--AHS-----------VGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESKIV-GL  169 (299)
Q Consensus       107 ~~~--~h~-----------~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~  169 (299)
                      +|.  ..+           -...+++. +|. ..+++..||.|.|||+.+...++.|++|... .++.++++|..|. |+
T Consensus       491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGG  570 (705)
T KOG0639|consen  491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGG  570 (705)
T ss_pred             eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCC
Confidence            331  111           11223444 555 8899999999999999999999999988654 4599999999999 99


Q ss_pred             cCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEE
Q 022303          170 IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLII  248 (299)
Q Consensus       170 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~  248 (299)
                      -|.+|+-||+++.+...+..-......+..+|.+.+++.|..++.+.+.... +.....+..|..-|.++.|.+- ++++
T Consensus       571 lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfv  649 (705)
T KOG0639|consen  571 LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFV  649 (705)
T ss_pred             CccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceee
Confidence            9999999999988654433323333345778899999999999999888766 4444566678999999999998 9999


Q ss_pred             EEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          249 SGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       249 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +.+.|+-+..|...-|..+...+...   .|.++..|.|.+|+++||-
T Consensus       650 StGkDnlLnawrtPyGasiFqskE~S---sVlsCDIS~ddkyIVTGSG  694 (705)
T KOG0639|consen  650 STGKDNLLNAWRTPYGASIFQSKESS---SVLSCDISFDDKYIVTGSG  694 (705)
T ss_pred             ecCchhhhhhccCccccceeeccccC---cceeeeeccCceEEEecCC
Confidence            99999999999999898777665444   7999999999999999973

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=5e-18  Score=126.85  Aligned_cols=186  Identities=14%  Similarity=0.153  Sum_probs=146.4

Q ss_pred             eccccCeeEEEe--cCCEEEEEeCCCcEEEEecCCc---eeEEEecCCCceeE-EEEec--CCCEEE-EEcCCeEEEEec
Q 022303          109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGY---KCVEEYSLPNAASL-VDFDF--DESKIV-GLIGTRICIWRR  179 (299)
Q Consensus       109 ~~h~~~i~~~~~--~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~-~~~~~--~~~~l~-~~~d~~i~v~d~  179 (299)
                      ..|.+.|..+..  -...|+|++.|++|+|+..+..   +.+.++.+|..++. ++|..  .|.+|+ ++.||.|.+|.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            579999988755  4559999999999999998753   56788899977666 88855  788899 999999999999


Q ss_pred             CCce----eeeeccCCccceeeeeccCCC--eEEEecCCCcEEEEEcCCc---ceeeeccccCCceeEEEeCCC------
Q 022303          180 NGLR----SVFPSREGTFMKGLCMRYFDP--EAVVGCEDGTARVFDMYSR---KCSQIIRMHCAPVTSLSLSED------  244 (299)
Q Consensus       180 ~~~~----~~~~~~~~~~~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~------  244 (299)
                      .+++    .....|...++ .+++.|.+.  .|++++.||.|.+.+.++.   ........|.-.|++++|.|.      
T Consensus        88 ~~g~w~k~~e~~~h~~SVN-sV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVN-SVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             CCCchhhhhhhhhhcccce-eecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence            8875    34455555555 347777654  3899999999999998764   122334578888999999874      


Q ss_pred             ---------CeEEEEeCCCcEEEEeCCCC--ceEEEeeccCCCCcEEEEEccCCC----CeEEeeecc
Q 022303          245 ---------QLIISGSSLGSIAISGLSSD--QRVATLRSTDCTGHIICLMYPQFL----HMLFFLCFL  297 (299)
Q Consensus       245 ---------~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~i~~~~~s~~g----~~l~s~s~~  297 (299)
                               +.|++|+.|..|+||+..++  +.-.++.+|.+  .|+.++|.|.-    .++|++|.-
T Consensus       167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d--wVRDVAwaP~~gl~~s~iAS~SqD  232 (299)
T KOG1332|consen  167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD--WVRDVAWAPSVGLPKSTIASCSQD  232 (299)
T ss_pred             cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcch--hhhhhhhccccCCCceeeEEecCC
Confidence                     35999999999999999875  34456889998  99999999963    578888754

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.77  E-value=1.9e-17  Score=127.01  Aligned_cols=207  Identities=11%  Similarity=0.150  Sum_probs=153.7

Q ss_pred             CccchhhHHHhhhh-HHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcccc---ceeecCcee--eEEeecccc
Q 022303           40 GFFDLVRCSAVCKS-WNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHR---FALEEGRID--IDQWKAHSV  113 (299)
Q Consensus        40 ~h~~~v~~~~~~~~-~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~l~~g~~~--~~~~~~h~~  113 (299)
                      .|.+.|+.+.+.+. ++++++                ...|+.+-+|  ++....+.   -.++...+.  ...-.+|.-
T Consensus        41 ~HgGsvNsL~id~tegrymlS----------------Ggadgsi~v~--Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky  102 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLS----------------GGADGSIAVF--DLQNATDYEASGLIAKHKCIVAKQHENGHKY  102 (397)
T ss_pred             cCCCccceeeeccccceEEee----------------cCCCccEEEE--EeccccchhhccceeheeeeccccCCcccee
Confidence            58888888888654 566665                2245555555  33332211   111111111  122257888


Q ss_pred             CeeEEEe-c--CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCC---CEEE-EEcCCeEEEEecCCce--e
Q 022303          114 GVDQCRM-K--RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE---SKIV-GLIGTRICIWRRNGLR--S  184 (299)
Q Consensus       114 ~i~~~~~-~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~-~~~d~~i~v~d~~~~~--~  184 (299)
                      .|..+.| |  .+++.+++.|.++++||.+|.+....|..++.+.+-+++|-.   .+++ |..+-.|++.|+..+.  .
T Consensus       103 ~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH  182 (397)
T KOG4283|consen  103 AISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH  182 (397)
T ss_pred             eeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence            9999877 4  449999999999999999999999999998888888888743   3566 8888899999999885  6


Q ss_pred             eeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCc-ceeee--------------ccccCCceeEEEeCCC-CeE
Q 022303          185 VFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSR-KCSQI--------------IRMHCAPVTSLSLSED-QLI  247 (299)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~-~~~~~--------------~~~~~~~i~~~~~~~~-~~l  247 (299)
                      .+.+|.+.+. .+.|+|...+ |++|+.||.|++||++.. .+...              -..|.+.++.++|..+ .++
T Consensus       183 ~LsGHr~~vl-aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l  261 (397)
T KOG4283|consen  183 TLSGHRDGVL-AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL  261 (397)
T ss_pred             eeccccCceE-EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhh
Confidence            7788888766 3488888888 889999999999999853 12111              1267789999999998 999


Q ss_pred             EEEeCCCcEEEEeCCCCc
Q 022303          248 ISGSSLGSIAISGLSSDQ  265 (299)
Q Consensus       248 ~~~~~dg~i~iwd~~~~~  265 (299)
                      ++++.|..+++|+..+|+
T Consensus       262 ~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  262 ASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             hhccCccceEEeecccCc
Confidence            999999999999987764

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.77  E-value=7.2e-18  Score=137.69  Aligned_cols=172  Identities=15%  Similarity=0.140  Sum_probs=143.4

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCcee--eeeccCCccceeeee
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRS--VFPSREGTFMKGLCM  199 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~  199 (299)
                      |+++|+..+.|+|||++...+.+.+..|...+. +.++....+|+ ++..|.|.+..+.++..  .+....+.....+.+
T Consensus        93 y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~y  172 (673)
T KOG4378|consen   93 YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRY  172 (673)
T ss_pred             eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeec
Confidence            999999999999999996666667777765554 89999999999 88899999999988753  344444555555677


Q ss_pred             ccCCCe-EEEecCCCcEEEEEcCCcceeeecc-ccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCceEEEeeccCC
Q 022303          200 RYFDPE-AVVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDC  275 (299)
Q Consensus       200 ~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  275 (299)
                      ++.... |.+++++|.|.+||+....++..+. .|..+...|+|+|.  .+|++.+.|..|.+||.+..+...++...+ 
T Consensus       173 s~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~-  251 (673)
T KOG4378|consen  173 SPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH-  251 (673)
T ss_pred             ccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecC-
Confidence            877776 7789999999999999777766554 89999999999997  789999999999999999888777776665 


Q ss_pred             CCcEEEEEccCCCCeEEeeeccc
Q 022303          276 TGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       276 ~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                        |...++|+++|.+|++|+.-+
T Consensus       252 --Plstvaf~~~G~~L~aG~s~G  272 (673)
T KOG4378|consen  252 --PLSTVAFSECGTYLCAGNSKG  272 (673)
T ss_pred             --CcceeeecCCceEEEeecCCc
Confidence              899999999999999998643

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=5.3e-17  Score=131.42  Aligned_cols=201  Identities=11%  Similarity=0.115  Sum_probs=157.6

Q ss_pred             ceeecCceeeEEee------ccccCeeEEEec-CC-EEEEEeCCCcEEEEecC--CceeEEEecCCCceeE-EEEecCCC
Q 022303           96 FALEEGRIDIDQWK------AHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLE--GYKCVEEYSLPNAASL-VDFDFDES  164 (299)
Q Consensus        96 ~~l~~g~~~~~~~~------~h~~~i~~~~~~-~~-~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~-~~~~~~~~  164 (299)
                      ..|..|.-.++.++      ...+.|+++.|. .. +|++++.||++++|.+.  +...++.+.....++. .+|.|+|.
T Consensus       191 ~~Lp~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~  270 (514)
T KOG2055|consen  191 KLLPPGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH  270 (514)
T ss_pred             ccCCCceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc
Confidence            44555555555553      235789999994 44 99999999999999886  3345666665555554 99999998


Q ss_pred             -EEE-EEcCCeEEEEecCCceee----eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeE
Q 022303          165 -KIV-GLIGTRICIWRRNGLRSV----FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTS  238 (299)
Q Consensus       165 -~l~-~~~d~~i~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~  238 (299)
                       .++ ++.....+.||+.+.+..    ..+++......+.+++++++++..+..|.|.+....+++.+..++. .+.|..
T Consensus       271 ~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~  349 (514)
T KOG2055|consen  271 SVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSD  349 (514)
T ss_pred             eEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEee
Confidence             566 788889999999877521    2223333333567899999999999999999999999999988854 678999


Q ss_pred             EEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          239 LSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       239 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      ++|+.+ +.|++.+.+|.|.+||+++..+++++...... .-++++.+++|.|||+||--|
T Consensus       350 ~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v-~gts~~~S~ng~ylA~GS~~G  409 (514)
T KOG2055|consen  350 FTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV-HGTSLCISLNGSYLATGSDSG  409 (514)
T ss_pred             EEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc-ceeeeeecCCCceEEeccCcc
Confidence            999988 88888888999999999999999999876643 457888899999999998654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.77  E-value=1.4e-17  Score=136.12  Aligned_cols=185  Identities=17%  Similarity=0.174  Sum_probs=140.0

Q ss_pred             eEEeeccccCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEE------------------------------------
Q 022303          105 IDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEE------------------------------------  147 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------------------------  147 (299)
                      .+....|.+.|.++.. .++.|++|+.|..|..||-. .+.++.                                    
T Consensus       280 ~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~  358 (626)
T KOG2106|consen  280 SKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN  358 (626)
T ss_pred             EeEeeecCCceEEEEEecCccEeecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC
Confidence            3444599999999988 77788899999999999932 111111                                    


Q ss_pred             -----ecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEc
Q 022303          148 -----YSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDM  220 (299)
Q Consensus       148 -----~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  220 (299)
                           ..+|..... ++.+|+..+++ ++.|+.+++|+  ..+..+.........+..++|.+ .++.|...|...+.|.
T Consensus       359 ~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~  435 (626)
T KOG2106|consen  359 GFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDT  435 (626)
T ss_pred             CceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEec
Confidence                 112333333 77788888888 99999999999  33334443333334456888988 8899999999999999


Q ss_pred             CCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC-CceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          221 YSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS-DQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       221 ~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ++...+..-.. ..++++++|+|+ .+||.|+.|+.|+||-+.. +........+.+. +|+.+.||+|+++|.+-|
T Consensus       436 e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs-~ithLDwS~Ds~~~~~~S  510 (626)
T KOG2106|consen  436 ETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGS-PITHLDWSSDSQFLVSNS  510 (626)
T ss_pred             ccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCc-eeEEeeecCCCceEEecc
Confidence            98666555444 889999999999 9999999999999999875 4455555444443 999999999999998865

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=4.9e-18  Score=136.68  Aligned_cols=230  Identities=11%  Similarity=0.158  Sum_probs=166.3

Q ss_pred             CCCCCCCCCCCcchhccCcHHHHHHHhh---------------------ccCccchhhHHHhhhhHHHHhhhhhHHHHHH
Q 022303           10 SPPPKKRSSKPRATIESLNGDIICMIFS---------------------SLGFFDLVRCSAVCKSWNAIINRCKLLQLLY   68 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~---------------------~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~   68 (299)
                      ..+.-.+-|.+.+.|.+|++.+...++-                     ..+|++.|..++++..++-++.         
T Consensus       190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLa---------  260 (463)
T KOG0270|consen  190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLA---------  260 (463)
T ss_pred             CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEE---------
Confidence            3444456667889999999876543331                     2259999999999999866643         


Q ss_pred             hhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCC-cee
Q 022303           69 CKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEG-YKC  144 (299)
Q Consensus        69 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~-~~~  144 (299)
                            ....|.++++|  ++..+...+.+          ..|.+.|.++.| +..  .|++|+.|++|.+.|.+. ...
T Consensus       261 ------SgsaD~TV~lW--D~~~g~p~~s~----------~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s  322 (463)
T KOG0270|consen  261 ------SGSADKTVKLW--DVDTGKPKSSI----------THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS  322 (463)
T ss_pred             ------ecCCCceEEEE--EcCCCCcceeh----------hhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc
Confidence                  14488999999  54444444433          689999999999 433  999999999999999984 223


Q ss_pred             EEEecCCCceeEEEEecCCCEEE--EEcCCeEEEEecCCce---eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEE
Q 022303          145 VEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLR---SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVF  218 (299)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iw  218 (299)
                      -..++....+-.++|.|.....+  ++.||+++-+|++...   .....|.+.+. .++++...+. +++++.|+.+++|
T Consensus       323 ~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS-gl~~n~~~p~~l~t~s~d~~Vklw  401 (463)
T KOG0270|consen  323 GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS-GLSVNIQTPGLLSTASTDKVVKLW  401 (463)
T ss_pred             CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcc-eEEecCCCCcceeeccccceEEEE
Confidence            34455556666788988665533  8889999999999874   44566777665 4577766666 8899999999999


Q ss_pred             EcCCcce--eeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCceE
Q 022303          219 DMYSRKC--SQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRV  267 (299)
Q Consensus       219 d~~~~~~--~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~  267 (299)
                      ++..-..  +..-.-.-+...|.++.|+  -+++.|+..+.++|||+.++..+
T Consensus       402 ~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  402 KFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             eecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            9875333  2211112234778888888  68899999999999999877544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=3e-18  Score=132.53  Aligned_cols=233  Identities=11%  Similarity=0.107  Sum_probs=167.1

Q ss_pred             HHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeecccc
Q 022303           34 MIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSV  113 (299)
Q Consensus        34 ~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~  113 (299)
                      ++...++|.. -.|+.|++-|.++|.                .-.++.+-+|  ++..-...+          ++.+|..
T Consensus        16 el~~tld~~~-a~~~~Fs~~G~~lAv----------------Gc~nG~vvI~--D~~T~~iar----------~lsaH~~   66 (405)
T KOG1273|consen   16 ELTHTLDNPL-AECCQFSRWGDYLAV----------------GCANGRVVIY--DFDTFRIAR----------MLSAHVR   66 (405)
T ss_pred             hhceeccCCc-cceEEeccCcceeee----------------eccCCcEEEE--Eccccchhh----------hhhcccc
Confidence            4444555555 678999999999986                1133444445  322222223          3379999


Q ss_pred             CeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCE--EEEEcCCeEEEEecCCceeee-ec
Q 022303          114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK--IVGLIGTRICIWRRNGLRSVF-PS  188 (299)
Q Consensus       114 ~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~d~~i~v~d~~~~~~~~-~~  188 (299)
                      +|++++| +++ .|+|+|.|..|++||+..|.+++.++...++....|+|....  ++.-.+..-.+-++..+.... ..
T Consensus        67 pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~  146 (405)
T KOG1273|consen   67 PITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPK  146 (405)
T ss_pred             ceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccC
Confidence            9999999 666 999999999999999999999999999999999999985543  335556666666666554222 11


Q ss_pred             -cCCccc---eeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccC-CceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022303          189 -REGTFM---KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-APVTSLSLSED-QLIISGSSLGSIAISGLS  262 (299)
Q Consensus       189 -~~~~~~---~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~  262 (299)
                       ..+...   ....+.+.++++++|...|.+.++|..+.+++..++... ..|..+.++.. ++|+..+.|..||.|+++
T Consensus       147 d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  147 DDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             CCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence             112111   122467778899999999999999999999998887555 78999999977 999999999999999986


Q ss_pred             C-------Cce--EEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          263 S-------DQR--VATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       263 ~-------~~~--~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      .       +++  .+.++.--+..+-.+++|+.+|.|+++|+
T Consensus       227 di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s  268 (405)
T KOG1273|consen  227 DIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS  268 (405)
T ss_pred             hhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc
Confidence            2       111  12222111111456789999999999987

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.75  E-value=4.1e-17  Score=126.90  Aligned_cols=192  Identities=16%  Similarity=0.289  Sum_probs=142.5

Q ss_pred             eEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEec---CC-CceeEEEEecCCCEEE-EEcCCeEEE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYS---LP-NAASLVDFDFDESKIV-GLIGTRICI  176 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~---~~-~~~~~~~~~~~~~~l~-~~~d~~i~v  176 (299)
                      .+.+.+|...|+.+.+ |..  +++++|.|.+|++|++++..++..+.   +| ..+.+++|+.++.+++ ++.|.++++
T Consensus       128 ~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~  207 (385)
T KOG1034|consen  128 SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKL  207 (385)
T ss_pred             ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEE
Confidence            3455899999999998 555  99999999999999999999998886   45 4566699999999999 999999999


Q ss_pred             EecCCce------ee-----------ee----------ccCCccceeeeeccCCCeEEEecCCCcEEEEEcC-Ccc----
Q 022303          177 WRRNGLR------SV-----------FP----------SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY-SRK----  224 (299)
Q Consensus       177 ~d~~~~~------~~-----------~~----------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~----  224 (299)
                      |++..++      ..           +.          ...-+...+-|+.+.++++++-+.++.|..|... -++    
T Consensus       208 W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~  287 (385)
T KOG1034|consen  208 WRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHN  287 (385)
T ss_pred             EecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhc
Confidence            9998432      00           00          1111222244666778889999999999999872 111    


Q ss_pred             ---------eeeeccccCCceeEEEeCCC---CeEEEEeCCCcEEEEeCCCCce--EEEeeccCCCCcEEEEEccCCCCe
Q 022303          225 ---------CSQIIRMHCAPVTSLSLSED---QLIISGSSLGSIAISGLSSDQR--VATLRSTDCTGHIICLMYPQFLHM  290 (299)
Q Consensus       225 ---------~~~~~~~~~~~i~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~g~~  290 (299)
                               .+.++......|+-+.|.-|   ++||.|...|.|.+||++..++  ..++..+.....|+..+|+.||..
T Consensus       288 vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~  367 (385)
T KOG1034|consen  288 VKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSI  367 (385)
T ss_pred             cCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcE
Confidence                     23334344556777766644   7899999999999999998765  233333333338999999999999


Q ss_pred             EEeeec
Q 022303          291 LFFLCF  296 (299)
Q Consensus       291 l~s~s~  296 (299)
                      |+..+.
T Consensus       368 lv~vcd  373 (385)
T KOG1034|consen  368 LVLVCD  373 (385)
T ss_pred             EEEEeC
Confidence            887653

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=5.1e-17  Score=131.50  Aligned_cols=209  Identities=15%  Similarity=0.253  Sum_probs=147.7

Q ss_pred             hhhhccccceeecCcee--e-------------EEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCcee-----
Q 022303           88 ELAMKHHRFALEEGRID--I-------------DQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKC-----  144 (299)
Q Consensus        88 ~~~~~~~~~~l~~g~~~--~-------------~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~-----  144 (299)
                      ++.|+|....+..++.+  +             +.+.--..+|.++.| +++  .+++++....++.||+.+.+.     
T Consensus       218 sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~  297 (514)
T KOG2055|consen  218 SVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP  297 (514)
T ss_pred             EEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccC
Confidence            45666666665554443  2             222233456666666 555  677778888888888766432     


Q ss_pred             ----------------------------------------EEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCce
Q 022303          145 ----------------------------------------VEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR  183 (299)
Q Consensus       145 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~  183 (299)
                                                              +.++.....+..++|+.+++.|+ ++.+|.|++||++...
T Consensus       298 ~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~  377 (514)
T KOG2055|consen  298 PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS  377 (514)
T ss_pred             CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcc
Confidence                                                    22222233334488999998888 8899999999999885


Q ss_pred             e--eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCC------cceeeeccccCCceeEEEeCCC-CeEEEEeC--
Q 022303          184 S--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS------RKCSQIIRMHCAPVTSLSLSED-QLIISGSS--  252 (299)
Q Consensus       184 ~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~--  252 (299)
                      .  .+....+.....+|.+.++.++++|+..|.|.|||..+      .+++..+..-...|++++|+++ ++||.+|.  
T Consensus       378 ~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~  457 (514)
T KOG2055|consen  378 CLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK  457 (514)
T ss_pred             eEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc
Confidence            3  33333333333578889999999999999999999664      3455566556678999999999 88887775  


Q ss_pred             CCcEEEEeCCCCceEEEeeccCC-CCcEEEEEccCCCCeEEeeec
Q 022303          253 LGSIAISGLSSDQRVATLRSTDC-TGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       253 dg~i~iwd~~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +..+++-.+.+......+..... .+.|+||+|+|.|-+||.|.-
T Consensus       458 knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe  502 (514)
T KOG2055|consen  458 KNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE  502 (514)
T ss_pred             ccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence            77899999988777666654432 137999999999999999864

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.75  E-value=1.5e-16  Score=121.75  Aligned_cols=182  Identities=17%  Similarity=0.185  Sum_probs=137.0

Q ss_pred             ccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCcee-EEEecCC------CceeEEEEec--CCCEEEEEcCCeEEEEe
Q 022303          110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKC-VEEYSLP------NAASLVDFDF--DESKIVGLIGTRICIWR  178 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~~------~~~~~~~~~~--~~~~l~~~~d~~i~v~d  178 (299)
                      .+-+.|.|+.| |++ .+++.. |..|.+|+++.+.. +..+...      .....-.|+|  +++.++...|+++..||
T Consensus       121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D  199 (370)
T KOG1007|consen  121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWD  199 (370)
T ss_pred             HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEE
Confidence            55668999999 766 666655 89999999987765 4444321      1223367776  78888899999999999


Q ss_pred             cCCceeeeeccCCcccee--eeeccCCCe-EEEecCCCcEEEEEcCC-cceeeeccccCCceeEEEeCCC--CeEEEEeC
Q 022303          179 RNGLRSVFPSREGTFMKG--LCMRYFDPE-AVVGCEDGTARVFDMYS-RKCSQIIRMHCAPVTSLSLSED--QLIISGSS  252 (299)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~-l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~  252 (299)
                      +++..........+...+  +.++|+.+. |+++++||.|++||.+. ..++.++.+|...|+++.|+|.  +++++|+.
T Consensus       200 ~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S  279 (370)
T KOG1007|consen  200 LRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS  279 (370)
T ss_pred             ccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC
Confidence            998875555444443333  455555555 89999999999999986 4578889999999999999996  89999999


Q ss_pred             CCcEEEEeCCC-----------------------------CceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          253 LGSIAISGLSS-----------------------------DQRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       253 dg~i~iwd~~~-----------------------------~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      |..|.+|....                             ...+.++..|+.  .|++++||.-..+++++
T Consensus       280 Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED--SVY~~aWSsadPWiFAS  348 (370)
T KOG1007|consen  280 DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED--SVYALAWSSADPWIFAS  348 (370)
T ss_pred             CceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc--ceEEEeeccCCCeeEEE
Confidence            99999996531                             113457777888  89999999866665543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=1.7e-17  Score=137.29  Aligned_cols=237  Identities=13%  Similarity=0.093  Sum_probs=163.9

Q ss_pred             hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCee
Q 022303           37 SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVD  116 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~  116 (299)
                      ++..|.+.++.++|.+..-.+++                ...++.+++|  .|...+...  ..-...+.+|.+|.++|.
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit----------------~sed~~lk~W--nLqk~~~s~--~~~~epi~tfraH~gPVl  348 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLIT----------------ASEDGTLKLW--NLQKAKKSA--EKDVEPILTFRAHEGPVL  348 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEE----------------eccccchhhh--hhcccCCcc--ccceeeeEEEecccCceE
Confidence            34567777777777777666665                3377888888  332222111  111233889999999999


Q ss_pred             EEEec-CC-EEEEEeCCCcEEEEecCCc----------eeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCc
Q 022303          117 QCRMK-RG-LILTGVGDKVMRLWSLEGY----------KCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGL  182 (299)
Q Consensus       117 ~~~~~-~~-~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~  182 (299)
                      |+.++ ++ ++++|+.||+|+.|++...          .....+.+|...+. ++++.....|+ ++.||+++.|+....
T Consensus       349 ~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~  428 (577)
T KOG0642|consen  349 CVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE  428 (577)
T ss_pred             EEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCc
Confidence            99995 44 9999999999999965311          23446678877775 99998888888 999999999998766


Q ss_pred             ee-eeeccCCccceeeeeccCCCe---EEEecCCCcEEEEEcCCcceeeeccc-------cCCceeEEEeCCC-CeEEEE
Q 022303          183 RS-VFPSREGTFMKGLCMRYFDPE---AVVGCEDGTARVFDMYSRKCSQIIRM-------HCAPVTSLSLSED-QLIISG  250 (299)
Q Consensus       183 ~~-~~~~~~~~~~~~~~~~~~~~~---l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~~~~-~~l~~~  250 (299)
                      .. .+........ -+.+.+.+..   .++...-+.-.+++...+..+..+..       ....+..+..+|+ .+.+++
T Consensus       429 ~~~~f~~~~e~g~-Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~  507 (577)
T KOG0642|consen  429 SPCTFGEPKEHGY-PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTA  507 (577)
T ss_pred             CccccCCccccCC-cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEec
Confidence            43 3333332211 1233333332   22222333333445554444444431       1234677888888 899999


Q ss_pred             eCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          251 SSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       251 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ..|+.|+++|..+++.+.....|..  .++++++.|+|-+|++++-
T Consensus       508 hed~~Ir~~dn~~~~~l~s~~a~~~--svtslai~~ng~~l~s~s~  551 (577)
T KOG0642|consen  508 HEDRSIRFFDNKTGKILHSMVAHKD--SVTSLAIDPNGPYLMSGSH  551 (577)
T ss_pred             ccCCceecccccccccchheeeccc--eecceeecCCCceEEeecC
Confidence            9999999999999999999999998  8999999999999999874

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.74  E-value=6.8e-18  Score=136.35  Aligned_cols=243  Identities=15%  Similarity=0.121  Sum_probs=166.1

Q ss_pred             CcHHHHHHHhhccCccchhhHHHhhhhHH--HHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhh-hccccceeecCce
Q 022303           27 LNGDIICMIFSSLGFFDLVRCSAVCKSWN--AIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELA-MKHHRFALEEGRI  103 (299)
Q Consensus        27 ~~~~~~~~i~~~~~h~~~v~~~~~~~~~~--~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~l~~g~~  103 (299)
                      ++...........-+...|+|++|.|.-+  .+|.                ...-+.+-+|  ++. ..++.       .
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~----------------GdK~G~VG~W--n~~~~~~d~-------d  225 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAV----------------GDKGGQVGLW--NFGTQEKDK-------D  225 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEE----------------ccCCCcEEEE--ecCCCCCcc-------C
Confidence            44555555556667888899999998776  3333                1123444455  221 01111       1


Q ss_pred             eeEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecC--CCceeE-EEEecCCCEEE-EEcCCeEEE
Q 022303          104 DIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSL--PNAASL-VDFDFDESKIV-GLIGTRICI  176 (299)
Q Consensus       104 ~~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~-~~~~~~~~~l~-~~~d~~i~v  176 (299)
                      -+..+..|..+|.++.| |.+  .+++.|.||+|++-|++.+.....+..  .....+ ++|+.+...++ +..=|...+
T Consensus       226 ~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~  305 (498)
T KOG4328|consen  226 GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNV  305 (498)
T ss_pred             ceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEE
Confidence            14556899999999998 444  999999999999999987654333333  333334 77776666555 777679999


Q ss_pred             EecCCceee---eeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcce-----eeeccccCCceeEEEeCCC-Ce
Q 022303          177 WRRNGLRSV---FPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKC-----SQIIRMHCAPVTSLSLSED-QL  246 (299)
Q Consensus       177 ~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~i~~~~~~~~-~~  246 (299)
                      ||++++...   +..|...+. .++++|..++ +++++.|++++|||++.-..     +..+ .|...|.++.|+|. ..
T Consensus       306 iD~R~~~s~~~~~~lh~kKI~-sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~-~HrrsV~sAyFSPs~gt  383 (498)
T KOG4328|consen  306 IDLRTDGSEYENLRLHKKKIT-SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL-PHRRSVNSAYFSPSGGT  383 (498)
T ss_pred             EEeecCCccchhhhhhhcccc-eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecc-cccceeeeeEEcCCCCc
Confidence            999987643   334444433 4588888877 89999999999999986322     2333 79999999999998 66


Q ss_pred             EEEEeCCCcEEEEeCC----CCceEEEeeccCCC---CcEEEEEccCCCCeEEeeec
Q 022303          247 IISGSSLGSIAISGLS----SDQRVATLRSTDCT---GHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       247 l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~---~~i~~~~~s~~g~~l~s~s~  296 (299)
                      |+|.+.|..|+|||..    .-+++.++......   -......|.|+..++++|-+
T Consensus       384 l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~  440 (498)
T KOG4328|consen  384 LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY  440 (498)
T ss_pred             eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEecc
Confidence            9999999999999983    34444444332221   13455689999888888754

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=4.1e-16  Score=135.91  Aligned_cols=177  Identities=14%  Similarity=0.205  Sum_probs=143.3

Q ss_pred             eccccCeeEEEec-CC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCcee
Q 022303          109 KAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRS  184 (299)
Q Consensus       109 ~~h~~~i~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~  184 (299)
                      .-.+-++.++++. ++ +++.||.|-.|++-+..+......+++|+..+. +.++|++++|+ .+.||.|++||+.++..
T Consensus        93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~  172 (933)
T KOG1274|consen   93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL  172 (933)
T ss_pred             eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchh
Confidence            4566789999994 44 999999999999999999999999998876665 99999999999 99999999999998752


Q ss_pred             e--ee----cc--C-CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc--ccCCceeEEEeCCC-CeEEEEeC
Q 022303          185 V--FP----SR--E-GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED-QLIISGSS  252 (299)
Q Consensus       185 ~--~~----~~--~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~  252 (299)
                      .  +.    ..  . .......+|+|.+..++....|+.|++|+...++....+.  .+...+..++|+|. +|||+++.
T Consensus       173 ~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~  252 (933)
T KOG1274|consen  173 SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTL  252 (933)
T ss_pred             hhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeecc
Confidence            1  11    11  1 2333457899999999999999999999999988877765  34445999999999 99999999


Q ss_pred             CCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeE
Q 022303          253 LGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHML  291 (299)
Q Consensus       253 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  291 (299)
                      ||.|.|||..+-+.      |.....|.+++|.|+...+
T Consensus       253 ~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~i  285 (933)
T KOG1274|consen  253 DGQILVWNVDTHER------HEFKRAVCCEAWKPNANAI  285 (933)
T ss_pred             CCcEEEEecccchh------ccccceeEEEecCCCCCee
Confidence            99999999987221      3222289999999987644

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.74  E-value=8.4e-18  Score=137.48  Aligned_cols=274  Identities=15%  Similarity=0.074  Sum_probs=193.8

Q ss_pred             cchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhh----hhhHHHHHHhhhc-CCCCCCCchhhhhhh---hhhhc
Q 022303           21 RATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIIN----RCKLLQLLYCKLH-GFSNTSGSSMRLHLE---ELAMK   92 (299)
Q Consensus        21 ~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~----~~~~w~~~~~~~~-~~~~~~d~~~~~~~~---~~~~~   92 (299)
                      .-.|.+|+.....-...-..|++.|.++...++|..+-.    .+..|+..+.+.. .....+-+.+|....   ++..+
T Consensus       266 ~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vG  345 (626)
T KOG2106|consen  266 GGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVG  345 (626)
T ss_pred             CceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEe
Confidence            456778887665533344489999999999999988865    3557997666655 333323333333211   11222


Q ss_pred             cccceeecCcee---eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE
Q 022303           93 HHRFALEEGRID---IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV  167 (299)
Q Consensus        93 ~~~~~l~~g~~~---~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  167 (299)
                      ..+.++..|..+   ..+..+|.+..+.++. ++. +++|++.|+.+++|+  ..+++.+.....+..+++|+|.+ .++
T Consensus       346 TtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va  422 (626)
T KOG2106|consen  346 TTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVA  422 (626)
T ss_pred             eccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEE
Confidence            333444444433   3445799999999888 444 999999999999999  66777777778888899999999 666


Q ss_pred             -EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeee-c-cccCCceeEEEeCCC
Q 022303          168 -GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI-I-RMHCAPVTSLSLSED  244 (299)
Q Consensus       168 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~-~~~~~~i~~~~~~~~  244 (299)
                       |+..|...+.|.++...+.....+....++.++|++.+|+.|+.|+.|++|-+........ . +.+..+|+.+.|++|
T Consensus       423 ~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D  502 (626)
T KOG2106|consen  423 VGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSD  502 (626)
T ss_pred             EeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCC
Confidence             9999999999999976444333355566889999999999999999999999876443222 2 234589999999999


Q ss_pred             -CeEEEEeCCCcEEEEeCCCCceEE-----------------EeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          245 -QLIISGSSLGSIAISGLSSDQRVA-----------------TLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       245 -~~l~~~~~dg~i~iwd~~~~~~~~-----------------~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                       +++.+.+.|-.|-.|.....+.+.                 .+.+..+ ..|..++-+.+.+++|+|--++
T Consensus       503 s~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~-t~i~a~~rs~~~~~lA~gdd~g  573 (626)
T KOG2106|consen  503 SQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDG-TDINAVARSHCEKLLASGDDFG  573 (626)
T ss_pred             CceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCC-chHHHhhhhhhhhhhhccccCc
Confidence             999999999999999554322111                 1112222 2677777788888888876543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=9.8e-18  Score=149.06  Aligned_cols=190  Identities=15%  Similarity=0.175  Sum_probs=148.6

Q ss_pred             eEEeeccccCeeEEEe---cCCEEEEEeCCCcEEEEecCCceeEEEe---cCCCceeEEEEecCCCEEE--EEcCCeEEE
Q 022303          105 IDQWKAHSVGVDQCRM---KRGLILTGVGDKVMRLWSLEGYKCVEEY---SLPNAASLVDFDFDESKIV--GLIGTRICI  176 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~--~~~d~~i~v  176 (299)
                      +.++..|++.|..+.|   .+++|++|+.||.|.|||+...+.-.++   ...+.+.+++|+..-.+++  ++.+|.+.|
T Consensus       109 la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~i  188 (1049)
T KOG0307|consen  109 LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVI  188 (1049)
T ss_pred             HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCcee
Confidence            5566899999999999   2349999999999999999875543333   2345666799987666654  788889999


Q ss_pred             EecCCceeeeeccCCc---cceeeeeccCCCe-EEEecCCC---cEEEEEcCCc-ceeeeccccCCceeEEEeCCC--Ce
Q 022303          177 WRRNGLRSVFPSREGT---FMKGLCMRYFDPE-AVVGCEDG---TARVFDMYSR-KCSQIIRMHCAPVTSLSLSED--QL  246 (299)
Q Consensus       177 ~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~-l~s~~~d~---~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~--~~  246 (299)
                      ||++..+.++......   ...++.|+|+... ++++++|.   .|.+||+|.- ..++++.+|...|.++.|++.  .+
T Consensus       189 WDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~l  268 (1049)
T KOG0307|consen  189 WDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRL  268 (1049)
T ss_pred             ccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchh
Confidence            9999886444332222   2446799999776 66666554   4899999863 467788899999999999974  89


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCC-eEEeeec
Q 022303          247 IISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLH-MLFFLCF  296 (299)
Q Consensus       247 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~s~s~  296 (299)
                      +++++.|+.|.+|+.++++.+..+.....  .+..+.|.|... .++++++
T Consensus       269 llSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fdv~w~pr~P~~~A~asf  317 (1049)
T KOG0307|consen  269 LLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFDVQWCPRNPSVMAAASF  317 (1049)
T ss_pred             hhcccCCCCeeEecCCCceEeeecCCCCc--ceeeeeecCCCcchhhhhee
Confidence            99999999999999999999999988666  899999999776 4444444

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.73  E-value=2.4e-15  Score=123.76  Aligned_cols=168  Identities=9%  Similarity=0.042  Sum_probs=128.3

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCCeEEEEecCCceeeeeccCCccceeeeecc
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY  201 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  201 (299)
                      .+++++.|+.+++||..+++.+..+..+..+..++|+|+++.++  +..++.|++||..+.+.............+++++
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~   82 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHP   82 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECC
Confidence            68899999999999999999998888776666799999998764  5678999999998775432222222223567888


Q ss_pred             CCCeEEE-ecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCC-cEEEEeCCCCceEEEeeccCCCCc
Q 022303          202 FDPEAVV-GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG-SIAISGLSSDQRVATLRSTDCTGH  278 (299)
Q Consensus       202 ~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~  278 (299)
                      ++..+++ +..++.+++||+++++.+..+.. ...+.+++|+|+ +++++++.++ .+.+||.++++.+..+....   .
T Consensus        83 ~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~  158 (300)
T TIGR03866        83 NGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ---R  158 (300)
T ss_pred             CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC---C
Confidence            8887654 45689999999998877776643 344688999999 8888888765 46788998888776654433   4


Q ss_pred             EEEEEccCCCCeEEeee
Q 022303          279 IICLMYPQFLHMLFFLC  295 (299)
Q Consensus       279 i~~~~~s~~g~~l~s~s  295 (299)
                      +.+++|+|+|++|++++
T Consensus       159 ~~~~~~s~dg~~l~~~~  175 (300)
T TIGR03866       159 PRFAEFTADGKELWVSS  175 (300)
T ss_pred             ccEEEECCCCCEEEEEc
Confidence            67899999999886543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.72  E-value=3.1e-15  Score=118.25  Aligned_cols=180  Identities=14%  Similarity=0.173  Sum_probs=139.3

Q ss_pred             eeEEEecCCEEEEEeCCC--cEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCceee--eeccC
Q 022303          115 VDQCRMKRGLILTGVGDK--VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSV--FPSRE  190 (299)
Q Consensus       115 i~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~--~~~~~  190 (299)
                      |..+-|+..+++..+.+.  .+++.+.+....+..+..+.++.++.++.  +.|+..-...|+|||+++.+..  +....
T Consensus        49 IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr--~RLvV~Lee~IyIydI~~MklLhTI~t~~  126 (391)
T KOG2110|consen   49 IVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR--KRLVVCLEESIYIYDIKDMKLLHTIETTP  126 (391)
T ss_pred             EEEeecccceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc--ceEEEEEcccEEEEecccceeehhhhccC
Confidence            333455666666665554  59999999999898888888888888754  4566555556999999988633  22221


Q ss_pred             CccceeeeeccCCC--eEEE--ecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCc-EEEEeCCCC
Q 022303          191 GTFMKGLCMRYFDP--EAVV--GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS-IAISGLSSD  264 (299)
Q Consensus       191 ~~~~~~~~~~~~~~--~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~-i~iwd~~~~  264 (299)
                      .....+.+++++..  +++-  ....|.|.+||..+-+.+..+..|.+++.+++|+++ .+|||+++.|+ |||+.+.+|
T Consensus       127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G  206 (391)
T KOG2110|consen  127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG  206 (391)
T ss_pred             CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence            22233456666654  5543  234688999999999999999999999999999999 99999999997 599999999


Q ss_pred             ceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          265 QRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       265 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +.+.+++.......|.+++|+|++++|++.|-
T Consensus       207 ~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~  238 (391)
T KOG2110|consen  207 QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN  238 (391)
T ss_pred             cEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence            99999986655447999999999999998874

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.72  E-value=2.4e-16  Score=125.42  Aligned_cols=228  Identities=11%  Similarity=0.060  Sum_probs=161.7

Q ss_pred             hccCccchhhHHHhhhhHHHH-hhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCe
Q 022303           37 SSLGFFDLVRCSAVCKSWNAI-INRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGV  115 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~~~~l-~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i  115 (299)
                      ...+|.+.|..++|||-...+ |+                ..+|.++++|.-     |++.....-..++..+.||+..|
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIAS----------------gSeD~~v~vW~I-----Pe~~l~~~ltepvv~L~gH~rrV  134 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIAS----------------GSEDTKVMVWQI-----PENGLTRDLTEPVVELYGHQRRV  134 (472)
T ss_pred             CccCccccccccccCccCCceeec----------------CCCCceEEEEEC-----CCcccccCcccceEEEeecceeE
Confidence            355899999999999976554 54                457888888843     44433333445688899999999


Q ss_pred             eEEEe-c--CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeee--ecc
Q 022303          116 DQCRM-K--RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVF--PSR  189 (299)
Q Consensus       116 ~~~~~-~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~--~~~  189 (299)
                      ..+.| |  .+.|++++.|.+|.+||+.+|+.+.++.+++.+.+++|+.+|.+++ ++.|..|+|||.+++..+.  ..|
T Consensus       135 g~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h  214 (472)
T KOG0303|consen  135 GLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH  214 (472)
T ss_pred             EEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc
Confidence            99999 3  3389999999999999999999999998777777899999999999 9999999999999987443  356


Q ss_pred             CCccceeeeeccCCCeEEEec----CCCcEEEEEcCCcc---eeeeccccCCceeEEEeCCC-C-eEEEEeCCCcEEEEe
Q 022303          190 EGTFMKGLCMRYFDPEAVVGC----EDGTARVFDMYSRK---CSQIIRMHCAPVTSLSLSED-Q-LIISGSSLGSIAISG  260 (299)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~iwd  260 (299)
                      .+....-.-|-.++. +++.+    .+.++-+||..+-+   ...++...+ .|.---|.+| + ..++|-.|+.|+.|.
T Consensus       215 eG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn-Gvl~PFyD~dt~ivYl~GKGD~~IRYyE  292 (472)
T KOG0303|consen  215 EGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN-GVLLPFYDPDTSIVYLCGKGDSSIRYFE  292 (472)
T ss_pred             cCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCC-ceEEeeecCCCCEEEEEecCCcceEEEE
Confidence            665544334555555 44433    46789999987643   234443333 3554456777 5 455666799999999


Q ss_pred             CCCCce-EEEeeccCCCCcEEEEEccCC
Q 022303          261 LSSDQR-VATLRSTDCTGHIICLMYPQF  287 (299)
Q Consensus       261 ~~~~~~-~~~~~~~~~~~~i~~~~~s~~  287 (299)
                      +....+ ++.+.......+-+.+.|-|.
T Consensus       293 it~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  293 ITNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             ecCCCceeEEecccccCCcccccccccc
Confidence            976542 332222211115566666664

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.72  E-value=2.3e-16  Score=120.90  Aligned_cols=185  Identities=11%  Similarity=0.090  Sum_probs=134.8

Q ss_pred             eccccCeeEEEec---CCEEEEEeCCCcEEEEecCCcee---EEEecCC-CceeEEEEecCCCEE-E-EEcCCeEEEEec
Q 022303          109 KAHSVGVDQCRMK---RGLILTGVGDKVMRLWSLEGYKC---VEEYSLP-NAASLVDFDFDESKI-V-GLIGTRICIWRR  179 (299)
Q Consensus       109 ~~h~~~i~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~-~~~~~~~~~~~~~~l-~-~~~d~~i~v~d~  179 (299)
                      ..+.+++++..|.   .+++.+.|-|-+..|||++++..   ...+-.| +++..++|..++..+ + .+.||++++||+
T Consensus       147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL  226 (364)
T KOG0290|consen  147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL  226 (364)
T ss_pred             cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence            4577899999983   34999999999999999998733   2333345 455559999877654 4 899999999999


Q ss_pred             CCce---eeeeccC-CccceeeeeccCCCe-EEE-ecCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC--CeEEEE
Q 022303          180 NGLR---SVFPSRE-GTFMKGLCMRYFDPE-AVV-GCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED--QLIISG  250 (299)
Q Consensus       180 ~~~~---~~~~~~~-~~~~~~~~~~~~~~~-l~s-~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~--~~l~~~  250 (299)
                      +...   .+++... ....-.++|+..+++ +++ +.....|.+.|++.. .++..++.|...|+.++|.|.  ..|.++
T Consensus       227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hicta  306 (364)
T KOG0290|consen  227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTA  306 (364)
T ss_pred             cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeec
Confidence            9765   2333333 222224577777666 444 344567999999864 567888999999999999998  799999


Q ss_pred             eCCCcEEEEeCCCCc------eEEEeeccCCCCcEEEEEccC-CCCeEEeeec
Q 022303          251 SSLGSIAISGLSSDQ------RVATLRSTDCTGHIICLMYPQ-FLHMLFFLCF  296 (299)
Q Consensus       251 ~~dg~i~iwd~~~~~------~~~~~~~~~~~~~i~~~~~s~-~g~~l~s~s~  296 (299)
                      +.|..+-+||+.+.-      ++-.+. ...  .|+.+.|++ .+..++.+.-
T Consensus       307 GDD~qaliWDl~q~~~~~~~dPilay~-a~~--EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  307 GDDCQALIWDLQQMPRENGEDPILAYT-AGG--EVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             CCcceEEEEecccccccCCCCchhhhh-ccc--eeeeeeecccCCCEEEEEec
Confidence            999999999997532      222222 222  899999996 5667776643

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.72  E-value=6.6e-17  Score=139.45  Aligned_cols=249  Identities=15%  Similarity=0.220  Sum_probs=177.4

Q ss_pred             CCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcccccee
Q 022303           19 KPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFAL   98 (299)
Q Consensus        19 ~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l   98 (299)
                      .....+++|+..+.+.++++.++.+.|+++.=+|.-+.+|-                .-.++++-++  .+.+.+.    
T Consensus       179 s~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVai----------------G~~~G~Viif--NlK~dki----  236 (910)
T KOG1539|consen  179 SSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAI----------------GLENGTVIIF--NLKFDKI----  236 (910)
T ss_pred             ecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEE----------------eccCceEEEE--EcccCcE----
Confidence            34567889999999999999999999999988888777774                1133433333  3333332    


Q ss_pred             ecCceeeEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEec-CC-CceeEEEEecCCCEEE-EEcCC
Q 022303           99 EEGRIDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYS-LP-NAASLVDFDFDESKIV-GLIGT  172 (299)
Q Consensus        99 ~~g~~~~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~-~~~d~  172 (299)
                            +.+++...++|+.+.| .||  .+++|+..|.+.+||++..+.+...+ .| +.+....|-+....++ ++.|.
T Consensus       237 ------l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~Dn  310 (910)
T KOG1539|consen  237 ------LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADN  310 (910)
T ss_pred             ------EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCC
Confidence                  3344544699999999 455  89999999999999999877766655 44 2333366666666666 66666


Q ss_pred             eEEEEecCC-----------------------------------------------------------------------
Q 022303          173 RICIWRRNG-----------------------------------------------------------------------  181 (299)
Q Consensus       173 ~i~v~d~~~-----------------------------------------------------------------------  181 (299)
                      .+++|=..+                                                                       
T Consensus       311 Slk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~  390 (910)
T KOG1539|consen  311 SLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFST  390 (910)
T ss_pred             ceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccch
Confidence            555543221                                                                       


Q ss_pred             --------------------------------------------ceeeeecc----CCccceeeeeccCCCeEEEecCCC
Q 022303          182 --------------------------------------------LRSVFPSR----EGTFMKGLCMRYFDPEAVVGCEDG  213 (299)
Q Consensus       182 --------------------------------------------~~~~~~~~----~~~~~~~~~~~~~~~~l~s~~~d~  213 (299)
                                                                  ++..+...    ......++|+++.|+..+.|...|
T Consensus       391 ~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G  470 (910)
T KOG1539|consen  391 EKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG  470 (910)
T ss_pred             hhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCC
Confidence                                                        00011000    111122456777777788899999


Q ss_pred             cEEEEEcCCcceeeec---cccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc------------------------
Q 022303          214 TARVFDMYSRKCSQII---RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ------------------------  265 (299)
Q Consensus       214 ~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~------------------------  265 (299)
                      .|-+|++++|-....+   ..|..+|+.++...- +.+++++.+|.+++||..+..                        
T Consensus       471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a  550 (910)
T KOG1539|consen  471 TIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLA  550 (910)
T ss_pred             eEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhh
Confidence            9999999999888777   489999999999866 899999999999999986443                        


Q ss_pred             -----------------eEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          266 -----------------RVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       266 -----------------~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                                       .++.+.+|.+  .|++++|||||++|+++++-
T Consensus       551 ~~~ddf~I~vvD~~t~kvvR~f~gh~n--ritd~~FS~DgrWlisasmD  597 (910)
T KOG1539|consen  551 IALDDFSIRVVDVVTRKVVREFWGHGN--RITDMTFSPDGRWLISASMD  597 (910)
T ss_pred             hhcCceeEEEEEchhhhhhHHhhcccc--ceeeeEeCCCCcEEEEeecC
Confidence                             2233456666  89999999999999999974

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.71  E-value=4.7e-16  Score=125.85  Aligned_cols=190  Identities=14%  Similarity=0.142  Sum_probs=141.1

Q ss_pred             eEEeeccccCeeEEEe-cCC---EEEEEeCCCcEEEEecCCc----eeEEEecCCCceeE-EEEecCCC-EEE-EEcCCe
Q 022303          105 IDQWKAHSVGVDQCRM-KRG---LILTGVGDKVMRLWSLEGY----KCVEEYSLPNAASL-VDFDFDES-KIV-GLIGTR  173 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~---~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~-~~~~~~~~-~l~-~~~d~~  173 (299)
                      ...++-+..+|++++| |..   ++++|..-|.|-+||+.+.    .-+..+..|+..+. +.|+|.+. .++ .+.||+
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence            4556789999999999 432   8999999999999999532    23455666766665 99999653 455 999999


Q ss_pred             EEEEecCCce--eeeeccCC-ccceeeeeccCCCeEEEecCCCcEEEEEcCCcce-eeeccccCCceeEEEeCCC--CeE
Q 022303          174 ICIWRRNGLR--SVFPSREG-TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED--QLI  247 (299)
Q Consensus       174 i~v~d~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~--~~l  247 (299)
                      |+.-|+++..  .++..... .....+.++..++.++.+..=|...+||.++... ...+..|...|++++++|-  .+|
T Consensus       259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l  338 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL  338 (498)
T ss_pred             eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence            9999999874  22222111 1122345666677788888878999999998655 5666788889999999997  799


Q ss_pred             EEEeCCCcEEEEeCCCCc--e--EEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          248 ISGSSLGSIAISGLSSDQ--R--VATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       248 ~~~~~dg~i~iwd~~~~~--~--~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ||++.|++++|||++.-.  .  +-..-.|..  .|.+..|||+|-.|++.+.
T Consensus       339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr--sV~sAyFSPs~gtl~TT~~  389 (498)
T KOG4328|consen  339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHRR--SVNSAYFSPSGGTLLTTCQ  389 (498)
T ss_pred             eecccCcceeeeehhhhcCCCCcceecccccc--eeeeeEEcCCCCceEeecc
Confidence            999999999999998632  1  222234555  8999999998777777653

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.71  E-value=5.1e-17  Score=136.33  Aligned_cols=239  Identities=14%  Similarity=0.129  Sum_probs=156.8

Q ss_pred             CcchhccCcHHHHHHHhh--ccCccchhhHHHhhhhHHHHhh------hhhHHHHHHhhhcCCCCCCCchhhhhhhhhhh
Q 022303           20 PRATIESLNGDIICMIFS--SLGFFDLVRCSAVCKSWNAIIN------RCKLLQLLYCKLHGFSNTSGSSMRLHLEELAM   91 (299)
Q Consensus        20 ~~~~~~~~~~~~~~~i~~--~~~h~~~v~~~~~~~~~~~l~~------~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~   91 (299)
                      -+++++.|+.+...++-.  +++|+..|.+++|.+....++.      .+.+|+..+......   +....+++... ..
T Consensus       120 GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~---e~~~~~~~~~~-n~  195 (720)
T KOG0321|consen  120 GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDAL---EEFDNRIYGRH-NT  195 (720)
T ss_pred             CCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhH---HHHhhhhhccc-cC
Confidence            578999999998887766  8899999999999998776654      344666644331000   00000111000 00


Q ss_pred             ccccceeecCceeeEEeeccccCe----eEEEecCC-EEEEEeC-CCcEEEEecCCceeEEEec--------CC----Cc
Q 022303           92 KHHRFALEEGRIDIDQWKAHSVGV----DQCRMKRG-LILTGVG-DKVMRLWSLEGYKCVEEYS--------LP----NA  153 (299)
Q Consensus        92 ~~~~~~l~~g~~~~~~~~~h~~~i----~~~~~~~~-~l~s~~~-dg~i~iwd~~~~~~~~~~~--------~~----~~  153 (299)
                      +|  .-...-...++..+.|...|    +.+.|.|+ .|++++. |+.|+|||+...+.....+        .+    -.
T Consensus       196 ~p--tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G  273 (720)
T KOG0321|consen  196 AP--TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVG  273 (720)
T ss_pred             CC--CCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceee
Confidence            00  00000000133345555554    44677666 9999888 9999999998765443222        12    12


Q ss_pred             eeEEEEecCCCEEE-EEcCCeEEEEecCCce----eeeeccCCc-cceeeeeccCCCeEEEecCCCcEEEEEcCCcce-e
Q 022303          154 ASLVDFDFDESKIV-GLIGTRICIWRRNGLR----SVFPSREGT-FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-S  226 (299)
Q Consensus       154 ~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~----~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~  226 (299)
                      .+++..+..|.+++ .+.|+.|++|++.+..    ..+..+... ...-.+.++++.++++|+.|...++|.+.+.+. .
T Consensus       274 ~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~  353 (720)
T KOG0321|consen  274 QVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP  353 (720)
T ss_pred             eEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh
Confidence            34466667778777 7889999999998643    222222221 111246789999999999999999999987554 3


Q ss_pred             eeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCC
Q 022303          227 QIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSD  264 (299)
Q Consensus       227 ~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~  264 (299)
                      ..+.+|...|++++|.|.  .-+++++.|..+++|++..+
T Consensus       354 ~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  354 ALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             hhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            455689999999999986  56888899999999999653

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.4e-15  Score=113.91  Aligned_cols=179  Identities=16%  Similarity=0.192  Sum_probs=129.0

Q ss_pred             CceeeEEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCcee------EEEecC-------CCc-eeEEEEecCCCEE
Q 022303          101 GRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKC------VEEYSL-------PNA-ASLVDFDFDESKI  166 (299)
Q Consensus       101 g~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~-------~~~-~~~~~~~~~~~~l  166 (299)
                      |...+-..++|.++|+.+.|.+.+|++|+. |.|+=|..+....      +.....       +-+ +..+-..|..+-+
T Consensus        51 gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi  129 (325)
T KOG0649|consen   51 GKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI  129 (325)
T ss_pred             CCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE
Confidence            334466668999999999999888888876 9999998754321      111111       112 2347788877776


Q ss_pred             E-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc----------C
Q 022303          167 V-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH----------C  233 (299)
Q Consensus       167 ~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------~  233 (299)
                      + ++.|+.++-||+++++  ..+.+|..-.- .+......+.+++|++||++++||.++++.++.+...          .
T Consensus       130 ~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH-~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g  208 (325)
T KOG0649|consen  130 LFAGGDGVIYQVDLEDGRIQREYRGHTDYVH-SVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG  208 (325)
T ss_pred             EEecCCeEEEEEEecCCEEEEEEcCCcceee-eeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC
Confidence            6 8899999999999885  56666665443 2233344566999999999999999999988777521          2


Q ss_pred             CceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccC
Q 022303          234 APVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQ  286 (299)
Q Consensus       234 ~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  286 (299)
                      ..|-+++.+. .++++|+ ...+.+|.++..++...+....   ++..+.|..
T Consensus       209 ~wigala~~e-dWlvCGg-Gp~lslwhLrsse~t~vfpipa---~v~~v~F~~  256 (325)
T KOG0649|consen  209 KWIGALAVNE-DWLVCGG-GPKLSLWHLRSSESTCVFPIPA---RVHLVDFVD  256 (325)
T ss_pred             ceeEEEeccC-ceEEecC-CCceeEEeccCCCceEEEeccc---ceeEeeeec
Confidence            3466666544 4676665 5669999999999998887665   688888853

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.69  E-value=1.9e-15  Score=120.41  Aligned_cols=186  Identities=12%  Similarity=0.136  Sum_probs=135.8

Q ss_pred             EEeeccccCeeEEEe-c--CCEEEEEeCCCcEEEEecCCc-------eeEEEecCCCceeE-EEEecCCCE-EE-EEcCC
Q 022303          106 DQWKAHSVGVDQCRM-K--RGLILTGVGDKVMRLWSLEGY-------KCVEEYSLPNAASL-VDFDFDESK-IV-GLIGT  172 (299)
Q Consensus       106 ~~~~~h~~~i~~~~~-~--~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~-l~-~~~d~  172 (299)
                      -.+.||+++|..+.| |  |..+++||.|.+|.||.+..+       +++..+.+|...+- ++|+|.... |+ ++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            344799999999999 3  349999999999999998654       45667778876665 999997765 44 89999


Q ss_pred             eEEEEecCCceeeeec-cCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCc-eeEEEeCCC-CeEEE
Q 022303          173 RICIWRRNGLRSVFPS-REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP-VTSLSLSED-QLIIS  249 (299)
Q Consensus       173 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~-~~l~~  249 (299)
                      +|.+|++.++...+.. |...+ ..++|+.++..+++.+.|++|+|||.++++.+.+-.+|.+. ...+.|-.+ .++-|
T Consensus       155 ~v~iWnv~tgeali~l~hpd~i-~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT  233 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLDHPDMV-YSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT  233 (472)
T ss_pred             eEEEEeccCCceeeecCCCCeE-EEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence            9999999999754443 44333 35689999999999999999999999999999887777642 344555556 64444


Q ss_pred             Ee---CCCcEEEEeCCCCc---eEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          250 GS---SLGSIAISGLSSDQ---RVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       250 ~~---~dg~i~iwd~~~~~---~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      |-   ++..+.+||..+-+   .++++....   .|.---++||...+..++
T Consensus       234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSn---Gvl~PFyD~dt~ivYl~G  282 (472)
T KOG0303|consen  234 GFSRMSERQIALWDPNNLEEPIALQELDTSN---GVLLPFYDPDTSIVYLCG  282 (472)
T ss_pred             ccccccccceeccCcccccCcceeEEeccCC---ceEEeeecCCCCEEEEEe
Confidence            43   37789999976533   233333332   455445667766666554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=2.5e-15  Score=125.57  Aligned_cols=189  Identities=13%  Similarity=0.130  Sum_probs=144.5

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCE--EEEEcCCeEEEEecC
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK--IVGLIGTRICIWRRN  180 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~d~~i~v~d~~  180 (299)
                      -..|+||++.|.++.. +.+ .|++|+.||+|+||.+.||.|+.+++..+.+.+++|+|.+..  |+++.+..+.+.+..
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~  472 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI  472 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence            3466899999999988 555 999999999999999999999999999988888999998875  345555555555432


Q ss_pred             Cce---------------------------------------eeeeccCCccceeeeeccCCCeEEEecC---CCcEEEE
Q 022303          181 GLR---------------------------------------SVFPSREGTFMKGLCMRYFDPEAVVGCE---DGTARVF  218 (299)
Q Consensus       181 ~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~---d~~i~iw  218 (299)
                      -+.                                       ++.-.+...+. .+.|+..|.+|++...   ...|.|+
T Consensus       473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~-~vtWHrkGDYlatV~~~~~~~~VliH  551 (733)
T KOG0650|consen  473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIR-QVTWHRKGDYLATVMPDSGNKSVLIH  551 (733)
T ss_pred             ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccc-eeeeecCCceEEEeccCCCcceEEEE
Confidence            110                                       00111111111 3467888888877544   4568899


Q ss_pred             EcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          219 DMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       219 d~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ++........|....+.|.++.|+|. .+|++++ ...|+|||+..+++++.+.....  .|.+|+.+|.|.-|+.|++.
T Consensus       552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~k--wiS~msihp~GDnli~gs~d  628 (733)
T KOG0650|consen  552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSK--WISSMSIHPNGDNLILGSYD  628 (733)
T ss_pred             ecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCe--eeeeeeecCCCCeEEEecCC
Confidence            99877766777666788999999999 7777777 46699999998888888876666  89999999999999999864

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=2.4e-16  Score=131.58  Aligned_cols=192  Identities=17%  Similarity=0.198  Sum_probs=148.3

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCC---CcEEEEecCCceeEEEec-CCCceeEEEEecCCCEEEEEcCCeEEEEe
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIVGLIGTRICIWR  178 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d~~i~v~d  178 (299)
                      +++.-.|...|..+.| ..| ||++...+   ..|.|+++...+...-|+ .++.+..+.|+|...+++.+....|++||
T Consensus       514 v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYd  593 (733)
T KOG0650|consen  514 VCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYD  593 (733)
T ss_pred             eEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEe
Confidence            3444568889999999 344 99887664   478888888766655554 44556679999999999988889999999


Q ss_pred             cCCceeeeeccCCc-cceeeeeccCCCeEEEecCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC-CeEEEEeCCCc
Q 022303          179 RNGLRSVFPSREGT-FMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS  255 (299)
Q Consensus       179 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~  255 (299)
                      +..+..+.+...+. ....+++++.|..++.|+.|+.+..+|+.-. ++.+.+..|...+++++|++. .++++|+.||+
T Consensus       594 L~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt  673 (733)
T KOG0650|consen  594 LSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT  673 (733)
T ss_pred             hhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence            98865443333332 2335789999999999999999999999854 466778889999999999999 99999999999


Q ss_pred             EEEEe------CCCC---ceEEEeeccCCC--CcEEEEEccCCCCeEEeeec
Q 022303          256 IAISG------LSSD---QRVATLRSTDCT--GHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       256 i~iwd------~~~~---~~~~~~~~~~~~--~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +.|+-      +..+   -++..+.+|...  ..|..+.|+|...+|++++-
T Consensus       674 v~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA  725 (733)
T KOG0650|consen  674 VIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA  725 (733)
T ss_pred             EEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCC
Confidence            99984      2222   245677777641  14888899999999998864

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.69  E-value=4.7e-16  Score=132.47  Aligned_cols=223  Identities=13%  Similarity=0.093  Sum_probs=166.0

Q ss_pred             CCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhh---HHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhh
Q 022303           12 PPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKS---WNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEE   88 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~---~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~   88 (299)
                      .+-.+++--.-+++..++..+.....+..|...|.|+.++.-   ..+||+                ...|.-+.++.. 
T Consensus       471 gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS----------------asrdRlIHV~Dv-  533 (1080)
T KOG1408|consen  471 GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS----------------ASRDRLIHVYDV-  533 (1080)
T ss_pred             cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh----------------ccCCceEEEEec-
Confidence            344455556678888888888888888899999999998753   233443                113333333321 


Q ss_pred             hhhccccceeecCceeeEEeeccccCeeEEEe--cCC--EEEEEeCCCcEEEEecCCceeEEEec------CCCceeEEE
Q 022303           89 LAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM--KRG--LILTGVGDKVMRLWSLEGYKCVEEYS------LPNAASLVD  158 (299)
Q Consensus        89 ~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~--~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~~~  158 (299)
                                ......++++.+|...|+++.|  .+.  .+++++.|+.|.+--.+.......+.      .+...+.|+
T Consensus       534 ----------~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~  603 (1080)
T KOG1408|consen  534 ----------KRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMA  603 (1080)
T ss_pred             ----------ccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEee
Confidence                      1222236778999999999999  332  89999999988653332111111122      223344599


Q ss_pred             EecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCc---cceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc
Q 022303          159 FDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGT---FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH  232 (299)
Q Consensus       159 ~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~---~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  232 (299)
                      +.|..++++ ++.|..|+|||+.+++  +.|+...++   ... +...|.+-++++...|+++.++|..+++++....+|
T Consensus       604 Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK-v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH  682 (1080)
T KOG1408|consen  604 VDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK-VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH  682 (1080)
T ss_pred             eCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEE-EEECCCccEEEEeecCCceEEEEeccchhhhhhcCc
Confidence            999999999 9999999999999875  455554433   332 467888999999999999999999999999999999


Q ss_pred             CCceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022303          233 CAPVTSLSLSED-QLIISGSSLGSIAISGLS  262 (299)
Q Consensus       233 ~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~  262 (299)
                      ...|+.+.|.+| +.|++.+.||.|.||.+.
T Consensus       683 sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  683 SEAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             chheeeeeecccchhheeecCCceEEEEECc
Confidence            999999999999 999999999999999985

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.68  E-value=1.7e-15  Score=127.40  Aligned_cols=193  Identities=13%  Similarity=0.101  Sum_probs=130.5

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEE--ecCCCceeE-EEEecCCCEEE--EEcCCeEEEE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEE--YSLPNAASL-VDFDFDESKIV--GLIGTRICIW  177 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~-~~~~~~~~~l~--~~~d~~i~v~  177 (299)
                      ++-+..|...|..+.| +.+ .|++++.|.++++||+++.+++..  +.+|...+. ++|.+.+..++  |+.||.|.+|
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW  172 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW  172 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence            3445789999999999 655 999999999999999999988876  667765554 99999776654  9999999999


Q ss_pred             ecCCce---------eeeeccCC--------------------ccce-eee-eccCCCeEEEecC-CCcEEEEEcCCcce
Q 022303          178 RRNGLR---------SVFPSREG--------------------TFMK-GLC-MRYFDPEAVVGCE-DGTARVFDMYSRKC  225 (299)
Q Consensus       178 d~~~~~---------~~~~~~~~--------------------~~~~-~~~-~~~~~~~l~s~~~-d~~i~iwd~~~~~~  225 (299)
                      |++-..         .+...+.+                    .+.. +.. +..++..|++++. |+.|++||++....
T Consensus       173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~  252 (720)
T KOG0321|consen  173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT  252 (720)
T ss_pred             EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence            987422         11111111                    1111 112 2233445888777 99999999987543


Q ss_pred             eeec--------ccc---CCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC--ceEEEeeccCCCCcEEEEEccCCCCeE
Q 022303          226 SQII--------RMH---CAPVTSLSLSED-QLIISGSSLGSIAISGLSSD--QRVATLRSTDCTGHIICLMYPQFLHML  291 (299)
Q Consensus       226 ~~~~--------~~~---~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~i~~~~~s~~g~~l  291 (299)
                      ....        ..|   ...+.++..+.. .+|++.+.|++|++|++.+-  .++..+.++.....-..-..+|++.+|
T Consensus       253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l  332 (720)
T KOG0321|consen  253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL  332 (720)
T ss_pred             ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence            2221        122   234566666654 56666666999999999763  345555554432122334678999999


Q ss_pred             Eeeecc
Q 022303          292 FFLCFL  297 (299)
Q Consensus       292 ~s~s~~  297 (299)
                      ++|++.
T Consensus       333 ~SgSsd  338 (720)
T KOG0321|consen  333 LSGSSD  338 (720)
T ss_pred             eccCCC
Confidence            999875

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.67  E-value=1.1e-15  Score=115.74  Aligned_cols=190  Identities=12%  Similarity=0.159  Sum_probs=136.6

Q ss_pred             eEEeeccccCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEec-CCCceeE-EEEecCCCEEEEEcCCeEEEEecCC
Q 022303          105 IDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYS-LPNAASL-VDFDFDESKIVGLIGTRICIWRRNG  181 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~-~~~~~~~~~l~~~~d~~i~v~d~~~  181 (299)
                      +.++++|.+.|+++.| .+++|++|..-|.|++|++++......++ .+...+. +..-|++.+..-+.|..+.+|++..
T Consensus         7 ~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~   86 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAY   86 (323)
T ss_pred             eeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccC
Confidence            4566899999999999 45599999999999999999988887777 4444444 7777776555577888888888765


Q ss_pred             cee-----------------------------eeec------c-----------------CCccceeeeec--cC-CCe-
Q 022303          182 LRS-----------------------------VFPS------R-----------------EGTFMKGLCMR--YF-DPE-  205 (299)
Q Consensus       182 ~~~-----------------------------~~~~------~-----------------~~~~~~~~~~~--~~-~~~-  205 (299)
                      ...                             .+..      |                 .+....++|..  .. +.+ 
T Consensus        87 s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~  166 (323)
T KOG0322|consen   87 SAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF  166 (323)
T ss_pred             cceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE
Confidence            110                             0000      0                 00011123332  11 122 


Q ss_pred             -EEEecCCCcEEEEEcCCcceeee----------ccccCCc---------------------------------------
Q 022303          206 -AVVGCEDGTARVFDMYSRKCSQI----------IRMHCAP---------------------------------------  235 (299)
Q Consensus       206 -l~s~~~d~~i~iwd~~~~~~~~~----------~~~~~~~---------------------------------------  235 (299)
                       +++|.++|.+.+||+.++..+-.          ...|.++                                       
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e  246 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE  246 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence             67888999999999988632211          1123322                                       


Q ss_pred             -------eeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          236 -------VTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       236 -------i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                             |..+..-|| +.+|+++.|+.||||..++.+++..++.|..  .|++++|+|+-..+|++|.
T Consensus       247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--gvn~vAfspd~~lmAaask  313 (323)
T KOG0322|consen  247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--GVNAVAFSPDCELMAAASK  313 (323)
T ss_pred             EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--ceeEEEeCCCCchhhhccC
Confidence                   334556678 8999999999999999999999999999998  8999999999999998875

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.66  E-value=3.9e-17  Score=140.99  Aligned_cols=228  Identities=16%  Similarity=0.151  Sum_probs=169.3

Q ss_pred             HHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccc
Q 022303           33 CMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHS  112 (299)
Q Consensus        33 ~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~  112 (299)
                      +.+..+++|...|.|+.|.+.+.+|++                ..+|.-+|+|..  .   ....+       ....||.
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iit----------------gsdd~lvKiwS~--e---t~~~l-------As~rGhs  232 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIIT----------------GSDDRLVKIWSM--E---TARCL-------ASCRGHS  232 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEee----------------cCccceeeeeec--c---chhhh-------ccCCCCc
Confidence            356678899999999999999999998                557788888832  2   22222       2338999


Q ss_pred             cCeeEEEec-CC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEEEEcCCeEEEEecC-Cceeee--
Q 022303          113 VGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIVGLIGTRICIWRRN-GLRSVF--  186 (299)
Q Consensus       113 ~~i~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~d~~i~v~d~~-~~~~~~--  186 (299)
                      +.|+.++.+ ++ ++++++.|..|++|.+.++.++..+.+|.+.+. ++|+|-.   ..+.||++++||.+ ......  
T Consensus       233 ~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~pr  309 (1113)
T KOG0644|consen  233 GDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPR  309 (1113)
T ss_pred             cccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCC
Confidence            999999995 44 899999999999999999999999999987666 9999854   46789999999987 211000  


Q ss_pred             ---------------e--------ccCC-----ccceeeeeccC-----------CCeEEEecCCCcEEEEEcCCcceee
Q 022303          187 ---------------P--------SREG-----TFMKGLCMRYF-----------DPEAVVGCEDGTARVFDMYSRKCSQ  227 (299)
Q Consensus       187 ---------------~--------~~~~-----~~~~~~~~~~~-----------~~~l~s~~~d~~i~iwd~~~~~~~~  227 (299)
                                     .        ....     +...+.++...           +...+++-.+-.+.+|++.+|....
T Consensus       310 p~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H  389 (1113)
T KOG0644|consen  310 PLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH  389 (1113)
T ss_pred             CCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhh
Confidence                           0        0000     00000011111           1123334445567889999998888


Q ss_pred             eccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022303          228 IIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       228 ~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      ...+|..++..+.++|-  ....+++.||+..|||+-.|-+++.....+.  .+...+||++|+.++.
T Consensus       390 ~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~--kl~d~kFSqdgts~~l  455 (1113)
T KOG0644|consen  390 NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG--KLVDGKFSQDGTSIAL  455 (1113)
T ss_pred             hhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc--eeeccccCCCCceEec
Confidence            88899999999999985  6788899999999999999988877765444  7888899999887765

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.66  E-value=8.4e-15  Score=114.03  Aligned_cols=174  Identities=19%  Similarity=0.160  Sum_probs=136.0

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCC------CceeEEEEecCCCEEEEEcCCeEEEEecCCc-e--e----eeeccC
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLP------NAASLVDFDFDESKIVGLIGTRICIWRRNGL-R--S----VFPSRE  190 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~-~--~----~~~~~~  190 (299)
                      ++++.+.+.-|++||.-+|+....+..-      ....+++|+|||..|+++....|++||+..+ .  .    ......
T Consensus       125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~  204 (406)
T KOG2919|consen  125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKF  204 (406)
T ss_pred             eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccc
Confidence            8999999999999999999988877631      2345699999999999999999999999543 2  1    111111


Q ss_pred             C--ccceeeeeccCCC-eEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC-CCcEEEEeCCC-C
Q 022303          191 G--TFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LGSIAISGLSS-D  264 (299)
Q Consensus       191 ~--~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg~i~iwd~~~-~  264 (299)
                      +  .+..+++++|... .++.|+....+-||.-..+.++..+-+|.+.|+.++|+++ +.|++|.. |..|-.||++. .
T Consensus       205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~  284 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR  284 (406)
T ss_pred             cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence            1  2334567777776 4889999999999998888999999899999999999999 88888875 78899999986 4


Q ss_pred             ceEEEeeccCC-CCcEEEEEccCCCCeEEeeecc
Q 022303          265 QRVATLRSTDC-TGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       265 ~~~~~~~~~~~-~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +++..+..|.+ .+.-.-....|+|++|++|+--
T Consensus       285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~td  318 (406)
T KOG2919|consen  285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTD  318 (406)
T ss_pred             chhhhhhhhccCccceEEEecCCCCceeeccCCC
Confidence            56777776654 2233345667899999999643

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=6.2e-15  Score=115.43  Aligned_cols=162  Identities=17%  Similarity=0.228  Sum_probs=119.4

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEec--CCCEEE-EEcCCeEEEEecCCcee----eeeccCCccce
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDF--DESKIV-GLIGTRICIWRRNGLRS----VFPSREGTFMK  195 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~--~~~~l~-~~~d~~i~v~d~~~~~~----~~~~~~~~~~~  195 (299)
                      .++++-..|.|++||..+++.+..+.++...+. +.|..  ....+. ++.||+|++||++....    .+..+.+....
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~  121 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI  121 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence            688889999999999999999999998877666 78765  344555 99999999999997642    22333322222


Q ss_pred             eeeeccCCCeEEEec----CCCcEEEEEcCCcce-eeec-cccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCc--
Q 022303          196 GLCMRYFDPEAVVGC----EDGTARVFDMYSRKC-SQII-RMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQ--  265 (299)
Q Consensus       196 ~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~-~~~~-~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~--  265 (299)
                      +++.+..+..+++|.    .+-.+.+||.+..+. +..+ ..|.+-|+++.|+|.  ++|++||.||-|.+||+....  
T Consensus       122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee  201 (376)
T KOG1188|consen  122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE  201 (376)
T ss_pred             EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence            333333455566654    366799999998765 5544 489999999999997  899999999999999997532  


Q ss_pred             --eEEEeeccCCCCcEEEEEccCCC
Q 022303          266 --RVATLRSTDCTGHIICLMYPQFL  288 (299)
Q Consensus       266 --~~~~~~~~~~~~~i~~~~~s~~g  288 (299)
                        ++.++. +..  .|..+.|+.++
T Consensus       202 DaL~~viN-~~s--SI~~igw~~~~  223 (376)
T KOG1188|consen  202 DALLHVIN-HGS--SIHLIGWLSKK  223 (376)
T ss_pred             hhHHHhhc-ccc--eeeeeeeecCC
Confidence              233332 222  68889998877

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.65  E-value=5.1e-15  Score=113.51  Aligned_cols=187  Identities=13%  Similarity=0.196  Sum_probs=135.4

Q ss_pred             eEEeeccccCeeEEEe-cCC--EEEEEeCC-------CcEEEEecCCc---------eeEEEec--CCCceeEEEEecCC
Q 022303          105 IDQWKAHSVGVDQCRM-KRG--LILTGVGD-------KVMRLWSLEGY---------KCVEEYS--LPNAASLVDFDFDE  163 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~--~l~s~~~d-------g~i~iwd~~~~---------~~~~~~~--~~~~~~~~~~~~~~  163 (299)
                      .++|..|.+.|+.+.- |-+  .|+|+..+       ..+.||.+...         +++..+.  ....+.++.|.|++
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns  135 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS  135 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence            4556788899999876 433  77776553       24689987532         2333333  23445569999999


Q ss_pred             CEEEEEcCCeEEEEecCCceeee---ecc-----CCccceeeeeccC--CCeEEEecCCCcEEEEEcCCcceeeecc-cc
Q 022303          164 SKIVGLIGTRICIWRRNGLRSVF---PSR-----EGTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSRKCSQIIR-MH  232 (299)
Q Consensus       164 ~~l~~~~d~~i~v~d~~~~~~~~---~~~-----~~~~~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~  232 (299)
                      ..+++-.|..|.+|++.....+.   ...     ..... .-.|+|.  +..++ ...|+++..||+++.+....+. .|
T Consensus       136 ~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ft-sg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI~dAH  213 (370)
T KOG1007|consen  136 DKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFT-SGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSIEDAH  213 (370)
T ss_pred             CeeEEeccCceEEEEcccCcchheeecccccccccceec-ccccCCCCccceEE-EeCCCcEEEEEccchhhhcchhhhh
Confidence            99998889999999998764311   111     11111 2357663  33354 4558999999999887766665 78


Q ss_pred             CCceeEEEeCCC--CeEEEEeCCCcEEEEeCCC-CceEEEeeccCCCCcEEEEEccCC-CCeEEeee
Q 022303          233 CAPVTSLSLSED--QLIISGSSLGSIAISGLSS-DQRVATLRSTDCTGHIICLMYPQF-LHMLFFLC  295 (299)
Q Consensus       233 ~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~s~s  295 (299)
                      ...+..+.|+|+  .+|++|+.||.|+|||.+. ..+++++.+|..  .|+++.|+|. .+++++||
T Consensus       214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH--WvW~VRfn~~hdqLiLs~~  278 (370)
T KOG1007|consen  214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH--WVWAVRFNPEHDQLILSGG  278 (370)
T ss_pred             cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce--EEEEEEecCccceEEEecC
Confidence            889999999999  5799999999999999986 467999999998  9999999995 45556655

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=2.4e-14  Score=107.41  Aligned_cols=168  Identities=13%  Similarity=0.109  Sum_probs=121.7

Q ss_pred             EEEEEeCCCcEEEEecCCc----------eeEEEecCCCceeE-EEEecCCCEEEEEcCCeEEEEecCCcee--------
Q 022303          124 LILTGVGDKVMRLWSLEGY----------KCVEEYSLPNAASL-VDFDFDESKIVGLIGTRICIWRRNGLRS--------  184 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~l~~~~d~~i~v~d~~~~~~--------  184 (299)
                      +|+.|..+|.|.+..+++.          ..+...+.|+..+. +.|.  ..+|+.+.||.|+-|.-+....        
T Consensus        24 ~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lw  101 (325)
T KOG0649|consen   24 YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLW  101 (325)
T ss_pred             EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhh
Confidence            8999999999999987632          23344466665554 8887  4566677779999987654321        


Q ss_pred             --eeeccCC----ccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEE
Q 022303          185 --VFPSREG----TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA  257 (299)
Q Consensus       185 --~~~~~~~----~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~  257 (299)
                        ....+.+    +....+.+.|..+.++.++.|+.++.||+++|+..+++++|.+.|.++.--.. ..+++|++||+++
T Consensus       102 e~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvR  181 (325)
T KOG0649|consen  102 EVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVR  181 (325)
T ss_pred             hhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEE
Confidence              1111111    11224566777777888889999999999999999999999999999988444 6799999999999


Q ss_pred             EEeCCCCceEEEeeccCCC--------CcEEEEEccCCCCeEEeee
Q 022303          258 ISGLSSDQRVATLRSTDCT--------GHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       258 iwd~~~~~~~~~~~~~~~~--------~~i~~~~~s~~g~~l~s~s  295 (299)
                      +||.+++++++.+......        ..|-+++-  +..+|++|+
T Consensus       182 vWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg  225 (325)
T KOG0649|consen  182 VWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG  225 (325)
T ss_pred             EEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC
Confidence            9999999999888644321        14555555  556777765

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=6e-15  Score=118.44  Aligned_cols=178  Identities=17%  Similarity=0.168  Sum_probs=123.4

Q ss_pred             eEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEec-CCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeecc-C
Q 022303          116 DQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSR-E  190 (299)
Q Consensus       116 ~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~-~  190 (299)
                      -+++| .++ .+++|+.||++|+|+......+.... .|..+-.++|+||++.|+ .+.| ...||+.+++....... .
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            45677 454 99999999999999977666555554 445555699999999999 7777 99999999874222111 1


Q ss_pred             C--ccceeeeeccCC---Ce--EEEecCCCcEEEEEcCCcce---e--eeccccCCceeEEEeCCC-CeEEEEeCCCcEE
Q 022303          191 G--TFMKGLCMRYFD---PE--AVVGCEDGTARVFDMYSRKC---S--QIIRMHCAPVTSLSLSED-QLIISGSSLGSIA  257 (299)
Q Consensus       191 ~--~~~~~~~~~~~~---~~--l~s~~~d~~i~iwd~~~~~~---~--~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~  257 (299)
                      +  .......+..++   ..  ++.....+.|+.||+...+-   +  .........|++++++++ ++++.|+.||.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence            1  111112333333   12  23334456677766553322   1  111123446999999999 9999999999999


Q ss_pred             EEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          258 ISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       258 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      |++..+.++++..+..+.. .|+.+.|+|+.+++++-|
T Consensus       307 i~~~~~lq~~~~vk~aH~~-~VT~ltF~Pdsr~~~svS  343 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLG-FVTGLTFSPDSRYLASVS  343 (398)
T ss_pred             EEEeceeeeeEeehhhhee-eeeeEEEcCCcCcccccc
Confidence            9999998888887665544 899999999999888644

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=3.8e-15  Score=123.49  Aligned_cols=157  Identities=16%  Similarity=0.175  Sum_probs=118.3

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEec-CCC-ceeEEEEecC--CCEEE-EEcCCeEEEE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS-LPN-AASLVDFDFD--ESKIV-GLIGTRICIW  177 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~-~~~~~~~~~~--~~~l~-~~~d~~i~v~  177 (299)
                      .+.+.||++.|+|+.| .++ +|++|+.|-.+.|||.-..|++..+. +|. .+.++.|-|.  .++++ |..|..|++|
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            3455899999999999 556 99999999999999999889888887 454 4556888773  44566 9999999999


Q ss_pred             ecCCce------------eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCccee-------e---eccccCC
Q 022303          178 RRNGLR------------SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCS-------Q---IIRMHCA  234 (299)
Q Consensus       178 d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~-------~---~~~~~~~  234 (299)
                      |+...+            ..+..|...+. -++..+.++. +.++++||+|+-+|++.....       .   .+...--
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVK-ria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVK-RIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhh-heecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            998521            22333444333 3577888866 889999999999999863211       1   1112223


Q ss_pred             ceeEEEeCCC--CeEEEEeCCCcEEEEeCC
Q 022303          235 PVTSLSLSED--QLIISGSSLGSIAISGLS  262 (299)
Q Consensus       235 ~i~~~~~~~~--~~l~~~~~dg~i~iwd~~  262 (299)
                      ...++.++|.  .+|++|+.|-..++||.+
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            5678999987  799999999999999953

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.63  E-value=5.1e-15  Score=122.38  Aligned_cols=176  Identities=15%  Similarity=0.096  Sum_probs=136.5

Q ss_pred             EEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEe-cCCCceeEEEEecCCCEEEEEcCCeEEEEecCCc
Q 022303          106 DQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEY-SLPNAASLVDFDFDESKIVGLIGTRICIWRRNGL  182 (299)
Q Consensus       106 ~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~  182 (299)
                      +...+|.++|.+-.| +++ -|+|++.||.|++|. ++|-...++ +...++.+++|.|+.+.++.+..+.+.+=.+.-.
T Consensus        98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n  176 (737)
T KOG1524|consen   98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAAN  176 (737)
T ss_pred             hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccc
Confidence            444789999999999 677 899999999999997 445443333 3456677799999999999778888877776644


Q ss_pred             e--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEe
Q 022303          183 R--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISG  260 (299)
Q Consensus       183 ~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd  260 (299)
                      .  .....|.+-+. .+.|++.++.+++|++|-..++||.. |..+..-..|..+|++++|+|++.++.++. .+++   
T Consensus       177 ~k~i~WkAHDGiiL-~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~~~~v~S~-nt~R---  250 (737)
T KOG1524|consen  177 SKIIRWRAHDGLVL-SLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEKDYLLWSY-NTAR---  250 (737)
T ss_pred             cceeEEeccCcEEE-EeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccccceeeeee-eeee---
Confidence            3  44566776655 45888888999999999999999977 788888889999999999999966666664 2333   


Q ss_pred             CCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          261 LSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                               +.....+ .|..++||+||..+++|+-.+
T Consensus       251 ---------~~~p~~G-SifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  251 ---------FSSPRVG-SIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             ---------ecCCCcc-ceEEEEEcCCCceeeccccCc
Confidence                     2222222 899999999999999887554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=2.6e-13  Score=115.14  Aligned_cols=187  Identities=14%  Similarity=0.144  Sum_probs=139.6

Q ss_pred             eeccccCeeEEEec--CCEEEEEeCCCcEEEEecCCcee-EEEecCCC-cee-EEEEecCCCEEEEEcCCeEEEEecCCc
Q 022303          108 WKAHSVGVDQCRMK--RGLILTGVGDKVMRLWSLEGYKC-VEEYSLPN-AAS-LVDFDFDESKIVGLIGTRICIWRRNGL  182 (299)
Q Consensus       108 ~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~-~~~-~~~~~~~~~~l~~~~d~~i~v~d~~~~  182 (299)
                      +.--..+|.++++.  .+.||.+-.||.|-+|++..+=. ...+.++. ..+ .++|.+.++++..+.+|.|..||+.+.
T Consensus        21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l  100 (691)
T KOG2048|consen   21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL  100 (691)
T ss_pred             EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC
Confidence            34556789999993  44999999999999999986533 34455443 333 399997777777999999999999987


Q ss_pred             eeee-eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceee--eccccCCceeEEEeCCC-CeEEEEeCCCcEEE
Q 022303          183 RSVF-PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSED-QLIISGSSLGSIAI  258 (299)
Q Consensus       183 ~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~i  258 (299)
                      +..+ ....+...+.++.++.+..++.|++||.+..++...++...  .+....+.|.++.|+|+ ..+++|+.||.|++
T Consensus       101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri  180 (691)
T KOG2048|consen  101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI  180 (691)
T ss_pred             ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence            5333 33344455677999999999999999988888887776643  33355689999999999 77999999999999


Q ss_pred             EeCCCCceEEEee-----ccC-CCCcEEEEEccCCCCeEEeee
Q 022303          259 SGLSSDQRVATLR-----STD-CTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       259 wd~~~~~~~~~~~-----~~~-~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ||...+..+....     ... ...-|+++.|-.++. +++|.
T Consensus       181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgD  222 (691)
T KOG2048|consen  181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGD  222 (691)
T ss_pred             EEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEec
Confidence            9999988766221     111 112688999887764 44443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=1.5e-13  Score=106.41  Aligned_cols=187  Identities=14%  Similarity=0.181  Sum_probs=129.6

Q ss_pred             eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCC----ceeEEEecCCCcee-EEEEec--CCCEEE-EEcCCeEEEEe
Q 022303          109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG----YKCVEEYSLPNAAS-LVDFDF--DESKIV-GLIGTRICIWR  178 (299)
Q Consensus       109 ~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~-~~~~~~--~~~~l~-~~~d~~i~v~d  178 (299)
                      .+|.+-|+++.| ..| .+++|+.|++++|||...    ..+....+.|+..+ .+.|.+  -|+.++ ++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            579999999999 444 999999999999999643    34666777776555 488844  467788 99999999998


Q ss_pred             cCCce--------eeeeccCCcccee--eeeccC--CCeEEEecCCCcEEEEEcCCc------ceeeecc-------ccC
Q 022303          179 RNGLR--------SVFPSREGTFMKG--LCMRYF--DPEAVVGCEDGTARVFDMYSR------KCSQIIR-------MHC  233 (299)
Q Consensus       179 ~~~~~--------~~~~~~~~~~~~~--~~~~~~--~~~l~s~~~d~~i~iwd~~~~------~~~~~~~-------~~~  233 (299)
                      -....        ............+  ++|.|.  +-.+++++.||.++||+...-      ....+++       .+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            63211        1111111222223  244444  334899999999999987543      2233332       366


Q ss_pred             CceeEEEeCCC----CeEEEEeCC-----CcEEEEeCCCC----ceEEEeeccCCCCcEEEEEccCC----CCeEEeeec
Q 022303          234 APVTSLSLSED----QLIISGSSL-----GSIAISGLSSD----QRVATLRSTDCTGHIICLMYPQF----LHMLFFLCF  296 (299)
Q Consensus       234 ~~i~~~~~~~~----~~l~~~~~d-----g~i~iwd~~~~----~~~~~~~~~~~~~~i~~~~~s~~----g~~l~s~s~  296 (299)
                      .+..|+.|+|.    .+||+|+.+     +.++||....+    ..+.++..+..  +|+.++|.|+    -..||+++-
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d--pI~di~wAPn~Gr~y~~lAvA~k  247 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD--PIRDISWAPNIGRSYHLLAVATK  247 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC--cceeeeeccccCCceeeEEEeec
Confidence            77899999985    478887765     47899987653    24566777777  9999999996    346777664


Q ss_pred             c
Q 022303          297 L  297 (299)
Q Consensus       297 ~  297 (299)
                      -
T Consensus       248 D  248 (361)
T KOG2445|consen  248 D  248 (361)
T ss_pred             C
Confidence            3

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.61  E-value=5.1e-14  Score=119.49  Aligned_cols=209  Identities=17%  Similarity=0.175  Sum_probs=151.8

Q ss_pred             hhhhhhcccccee--ecCce----------eeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCC-c-------e
Q 022303           86 LEELAMKHHRFAL--EEGRI----------DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG-Y-------K  143 (299)
Q Consensus        86 ~~~~~~~~~~~~l--~~g~~----------~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~-~-------~  143 (299)
                      +.++.+.|++..+  +.|..          .++++++|.+.|+|++| .++ .+++|+.|..|.+|+.+- |       .
T Consensus        15 i~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D   94 (1081)
T KOG1538|consen   15 INDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHND   94 (1081)
T ss_pred             hheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCC
Confidence            3477888888433  23322          17888999999999999 566 999999999999998642 1       1


Q ss_pred             eEEEec------------------------------CCCceeEEEEecCCCEEE-EEcCCeEEEEecCCce-eeeeccCC
Q 022303          144 CVEEYS------------------------------LPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR-SVFPSREG  191 (299)
Q Consensus       144 ~~~~~~------------------------------~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~-~~~~~~~~  191 (299)
                      .++.+.                              ....+..++|..||.+++ |-.+|+|.+-+-.+.. ..+..+.+
T Consensus        95 ~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg  174 (1081)
T KOG1538|consen   95 AIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGG  174 (1081)
T ss_pred             eeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCC
Confidence            111111                              011234488999999999 9999999998766554 33444333


Q ss_pred             c--cceeeeeccCCCe-----EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 022303          192 T--FMKGLCMRYFDPE-----AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS  263 (299)
Q Consensus       192 ~--~~~~~~~~~~~~~-----l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~  263 (299)
                      .  ..+.++++|....     +++.....++.+|.+. |+.+..-+.-.-...|+.+.++ .+++.|+.|+.+++|-. .
T Consensus       175 ~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~  252 (1081)
T KOG1538|consen  175 SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-D  252 (1081)
T ss_pred             CCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee-c
Confidence            3  3345677776433     7778888888888876 6665544444555788999998 99999999999999985 5


Q ss_pred             CceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          264 DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       264 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      |-.+.++.....  .|+.++..|++++++.|+.-+
T Consensus       253 GvrLGTvg~~D~--WIWtV~~~PNsQ~v~~GCqDG  285 (1081)
T KOG1538|consen  253 GVRLGTVGEQDS--WIWTVQAKPNSQYVVVGCQDG  285 (1081)
T ss_pred             CeEEeeccccce--eEEEEEEccCCceEEEEEccC
Confidence            777888866555  999999999999999998643

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.60  E-value=2.9e-14  Score=114.04  Aligned_cols=183  Identities=17%  Similarity=0.172  Sum_probs=137.7

Q ss_pred             ccCeeEEEecCC---EEEEEeCCCcEEEEecCCce---------eEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEE
Q 022303          112 SVGVDQCRMKRG---LILTGVGDKVMRLWSLEGYK---------CVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIW  177 (299)
Q Consensus       112 ~~~i~~~~~~~~---~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~  177 (299)
                      ..+|..+.|..+   .|+||+.|..|++|.++.+.         ....+..|...+. +.|+|+|.+++ |+.+|.+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            458889988322   89999999999999876432         2334456665555 99999999999 8999999999


Q ss_pred             ecC--------C-----ce-----eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEE
Q 022303          178 RRN--------G-----LR-----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSL  239 (299)
Q Consensus       178 d~~--------~-----~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~  239 (299)
                      ...        +     .+     .+...|...+. -++|.+++..+++++.|+.+++||+..|..+..+..|...+..+
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diy-dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv  171 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIY-DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV  171 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchh-hhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence            876        2     10     12222333333 25899999999999999999999999999999999999999999


Q ss_pred             EeCCC-CeEEEEeCCCcEEEEeCCCCceEEEee---------------------ccCCCCcEEEEEccCCCCeEEeee
Q 022303          240 SLSED-QLIISGSSLGSIAISGLSSDQRVATLR---------------------STDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       240 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~---------------------~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      +|.|- +++++-+.|...+.+++...+.++...                     ........+.++|+|+|.+|++.+
T Consensus       172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence            99998 999999999988887775433322221                     111112456789999999988743

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=1.3e-13  Score=107.18  Aligned_cols=181  Identities=14%  Similarity=0.144  Sum_probs=127.3

Q ss_pred             eeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeeeccC
Q 022303          115 VDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSRE  190 (299)
Q Consensus       115 i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~  190 (299)
                      -.|+.| +.| +|+.|..||.|.|||+.|...-..+..|-..++ ++|+++|+.|+ ++.|..|.+||+..+.......-
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            667888 555 999999999999999999888888888865554 99999999999 99999999999998763333222


Q ss_pred             CccceeeeeccCCCe-EEEecCCCcEEEEEcCCcc--eeeecc-c-cCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC
Q 022303          191 GTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK--CSQIIR-M-HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD  264 (299)
Q Consensus       191 ~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~--~~~~~~-~-~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~  264 (299)
                      ........++|.... .++.-.+..-.+.++..++  .+..-. + -+....+..|.+. +++++|...|.+.++|..+.
T Consensus       106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~  185 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL  185 (405)
T ss_pred             cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh
Confidence            222223356666555 2222223333344444311  111110 0 0111223356676 99999999999999999999


Q ss_pred             ceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          265 QRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       265 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +++..++..... .|.++.|+..|++|+..+.
T Consensus       186 e~vas~rits~~-~IK~I~~s~~g~~liiNts  216 (405)
T KOG1273|consen  186 ECVASFRITSVQ-AIKQIIVSRKGRFLIINTS  216 (405)
T ss_pred             eeeeeeeechhe-eeeEEEEeccCcEEEEecC
Confidence            999998877632 8999999999999987653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=7e-16  Score=127.92  Aligned_cols=234  Identities=16%  Similarity=0.099  Sum_probs=161.0

Q ss_pred             CCcchhccCcHH--------HHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhh
Q 022303           19 KPRATIESLNGD--------IICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELA   90 (299)
Q Consensus        19 ~~~~~~~~~~~~--------~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~   90 (299)
                      ..+..|++|+++        ..+.+++|.+|.+.|.|+++.+++..+.+                ..-|++++.|.....
T Consensus       313 sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ys----------------gg~Dg~I~~w~~p~n  376 (577)
T KOG0642|consen  313 SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYS----------------GGIDGTIRCWNLPPN  376 (577)
T ss_pred             ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEe----------------eccCceeeeeccCCC
Confidence            356778888872        33478889999999999999999999887                235666777733212


Q ss_pred             hccccceeecCceeeEEeeccccCeeEEEecCC--EEEEEeCCCcEEEEecCCceeEEEec---CCCceeEEEEecCCCE
Q 022303           91 MKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYS---LPNAASLVDFDFDESK  165 (299)
Q Consensus        91 ~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~  165 (299)
                      ..|+...  ....-..++.||++.|+.++++..  .|++++.||++++|+.....+ .++.   .+....++++...  .
T Consensus       377 ~dp~ds~--dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss--~  451 (577)
T KOG0642|consen  377 QDPDDSY--DPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSS--R  451 (577)
T ss_pred             CCccccc--CcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccc--h
Confidence            2221110  001113456899999999999433  899999999999999876665 3343   2333444555332  2


Q ss_pred             EE-EEcCCeEEEEec---CCce--eeeeccC-------CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc
Q 022303          166 IV-GLIGTRICIWRR---NGLR--SVFPSRE-------GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH  232 (299)
Q Consensus       166 l~-~~~d~~i~v~d~---~~~~--~~~~~~~-------~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  232 (299)
                      ++ ...+.....+++   ....  .++....       .... .+...+..+..+++..|+.|+++|..+++++.....|
T Consensus       452 ~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in-~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~  530 (577)
T KOG0642|consen  452 PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN-KVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH  530 (577)
T ss_pred             hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc-eEEecCCCCeeEecccCCceecccccccccchheeec
Confidence            22 233333333333   3222  1221111       1112 3466777788999999999999999999999999999


Q ss_pred             CCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccC
Q 022303          233 CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTD  274 (299)
Q Consensus       233 ~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  274 (299)
                      ...++++++.|+ -+|++++.|+.+++|.+....++.....|.
T Consensus       531 ~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  531 KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             cceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            999999999999 899999999999999998777776665554

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=1.2e-13  Score=110.33  Aligned_cols=238  Identities=13%  Similarity=0.099  Sum_probs=164.4

Q ss_pred             HHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEe-eccc
Q 022303           34 MIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQW-KAHS  112 (299)
Q Consensus        34 ~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~h~  112 (299)
                      +....++|.+.|+++.|+.++++|++                ...|...++|..+-.+..      ....++... ..|.
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~~L~S----------------GGDD~~~~~W~~de~~~~------k~~KPI~~~~~~H~  105 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDRFLAS----------------GGDDMHGRVWNVDELMVR------KTPKPIGVMEHPHR  105 (609)
T ss_pred             hhhhhhhhccccceeeeccCCeEEee----------------cCCcceeeeechHHHHhh------cCCCCceeccCccc
Confidence            44467799999999999999999998                335555566643211111      001112222 3466


Q ss_pred             cCeeEEEec-CC-EEEEEeCCCcEEEEecCCceeEEEecCCC---ceeEEEEecCCCEEE-EEcCCeEEEEecCCce---
Q 022303          113 VGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN---AASLVDFDFDESKIV-GLIGTRICIWRRNGLR---  183 (299)
Q Consensus       113 ~~i~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~---  183 (299)
                      ..|.|++|. .+ .+++|..+++|.+.|+++.+.+..+....   .++.+..+|..+.++ .+.++.|.+||.+...   
T Consensus       106 SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~  185 (609)
T KOG4227|consen  106 SNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI  185 (609)
T ss_pred             cceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC
Confidence            899999994 44 99999999999999999999888877554   566699999888888 9999999999998654   


Q ss_pred             -eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcc-----------------------------ee------
Q 022303          184 -SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK-----------------------------CS------  226 (299)
Q Consensus       184 -~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~-----------------------------~~------  226 (299)
                       .......+......-|+|..+. |++.+..+-+.+||.+...                             ..      
T Consensus       186 ~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~  265 (609)
T KOG4227|consen  186 SLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRG  265 (609)
T ss_pred             ceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhcc
Confidence             2222222222223467777666 6677778888899876311                             00      


Q ss_pred             -------------eecc-ccC-------CceeEEEeCCCCeEEEEeCCCcEEEEeCCC----------C-----------
Q 022303          227 -------------QIIR-MHC-------APVTSLSLSEDQLIISGSSLGSIAISGLSS----------D-----------  264 (299)
Q Consensus       227 -------------~~~~-~~~-------~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~-----------  264 (299)
                                   ..++ .|.       ..+.+++|..+..+++|+.+-.|++|.+..          |           
T Consensus       266 ~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~  345 (609)
T KOG4227|consen  266 KCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIF  345 (609)
T ss_pred             CCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhhe
Confidence                         0000 111       245667776675699999999999998752          1           


Q ss_pred             --ceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          265 --QRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       265 --~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                        +.+..+++|..  -++.+.|+|...+|++++
T Consensus       346 i~~~~~VLrGHRS--v~NQVRF~~H~~~l~SSG  376 (609)
T KOG4227|consen  346 IEKELTVLRGHRS--VPNQVRFSQHNNLLVSSG  376 (609)
T ss_pred             ecceeEEEecccc--cccceeecCCcceEeccc
Confidence              13456778887  789999999988888765

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.57  E-value=3.9e-14  Score=107.39  Aligned_cols=151  Identities=17%  Similarity=0.180  Sum_probs=114.5

Q ss_pred             cccCeeEEEe--cCC---EEEEEeCCCcEEEEecCCceeEEEe----------cCC-CceeEEEEecCCCE-EEEEcCCe
Q 022303          111 HSVGVDQCRM--KRG---LILTGVGDKVMRLWSLEGYKCVEEY----------SLP-NAASLVDFDFDESK-IVGLIGTR  173 (299)
Q Consensus       111 h~~~i~~~~~--~~~---~l~s~~~dg~i~iwd~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~-l~~~~d~~  173 (299)
                      -.+.+.|..+  .++   +|+.|-.+|.+-+||+.++..+..+          ..| .++.++.+.+.-.. +.++.+..
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk  228 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK  228 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence            4466777665  333   7888899999999999987443332          233 34455777654443 44777888


Q ss_pred             EEEEecCCce-----eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeE
Q 022303          174 ICIWRRNGLR-----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI  247 (299)
Q Consensus       174 i~v~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l  247 (299)
                      +.+|.++...     ......++.....+.+.++++.+++++.|+.|++|+.++..++..++.|...|++++|+|+ .++
T Consensus       229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm  308 (323)
T KOG0322|consen  229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM  308 (323)
T ss_pred             ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence            9999887542     1111122222234688899999999999999999999999999999999999999999999 999


Q ss_pred             EEEeCCCcEEEEeC
Q 022303          248 ISGSSLGSIAISGL  261 (299)
Q Consensus       248 ~~~~~dg~i~iwd~  261 (299)
                      |+++.|+.|.+|++
T Consensus       309 AaaskD~rISLWkL  322 (323)
T KOG0322|consen  309 AAASKDARISLWKL  322 (323)
T ss_pred             hhccCCceEEeeec
Confidence            99999999999986

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=7.8e-15  Score=130.93  Aligned_cols=226  Identities=11%  Similarity=0.079  Sum_probs=168.7

Q ss_pred             CCCCCCCCcchhccCcHHHH------HHHhhccCccchhhHHHhhhhHH-HHhhhhhHHHHHHhhhcCCCCCCCchhhhh
Q 022303           13 PKKRSSKPRATIESLNGDII------CMIFSSLGFFDLVRCSAVCKSWN-AIINRCKLLQLLYCKLHGFSNTSGSSMRLH   85 (299)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~------~~i~~~~~h~~~v~~~~~~~~~~-~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~   85 (299)
                      ...+.+..+-.|.+|+....      ..+..+-.|.+.|+.+.|++... .||+                ..+++.+-+|
T Consensus        81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLAS----------------Ga~~geI~iW  144 (1049)
T KOG0307|consen   81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLAS----------------GADDGEILIW  144 (1049)
T ss_pred             ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeec----------------cCCCCcEEEe
Confidence            34666777788888887653      25556678999999999999765 8887                2344444444


Q ss_pred             hhhhhhccccceeecCceeeEEeeccccCeeEEEecCC---EEEEEeCCCcEEEEecCCceeEEEecCCCc---eeEEEE
Q 022303           86 LEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRG---LILTGVGDKVMRLWSLEGYKCVEEYSLPNA---ASLVDF  159 (299)
Q Consensus        86 ~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~  159 (299)
                        ++.. +... +.-|      -....+.|.++.|...   .|++++.+|.+.|||++..+.+-.+..+..   .-.++|
T Consensus       145 --Dlnn-~~tP-~~~~------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~W  214 (1049)
T KOG0307|consen  145 --DLNK-PETP-FTPG------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAW  214 (1049)
T ss_pred             --ccCC-cCCC-CCCC------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeee
Confidence              5443 1111 1111      1345678999999543   899999999999999998888777765544   234999


Q ss_pred             ecCCCE-EE-EEcCC---eEEEEecCCc---eeeeeccCCccceeeeeccCC-CeEEEecCCCcEEEEEcCCcceeeecc
Q 022303          160 DFDESK-IV-GLIGT---RICIWRRNGL---RSVFPSREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYSRKCSQIIR  230 (299)
Q Consensus       160 ~~~~~~-l~-~~~d~---~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~  230 (299)
                      +|+... ++ ++.|.   .|.+||++..   ..+++.|...+. .+.|++.+ .++++++.|+.|.+|+.++++.+.++.
T Consensus       215 hP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gil-slsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p  293 (1049)
T KOG0307|consen  215 HPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGIL-SLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP  293 (1049)
T ss_pred             CCCCceeeeeecCCCCCceeEeecccccCCchhhhccccccee-eeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence            998754 44 66654   8999998854   355666665554 35777777 448999999999999999999999998


Q ss_pred             ccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCc
Q 022303          231 MHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQ  265 (299)
Q Consensus       231 ~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~  265 (299)
                      ...+.+..+.|+|.  ..+++++.||.|.|+.+....
T Consensus       294 ~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  294 AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            88899999999987  689999999999999997543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.56  E-value=1.2e-12  Score=101.87  Aligned_cols=163  Identities=18%  Similarity=0.245  Sum_probs=127.2

Q ss_pred             CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCc-e--eeeeccCCccceeeeeccCCCe--E
Q 022303          132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGL-R--SVFPSREGTFMKGLCMRYFDPE--A  206 (299)
Q Consensus       132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~-~--~~~~~~~~~~~~~~~~~~~~~~--l  206 (299)
                      ..|.|||-...+++.++....++..+.+.+  ..|+....+.|+||.+.+. +  ..+....++.. ..++.+....  |
T Consensus        75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r--~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkG-lC~~~~~~~k~~L  151 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSFNSEIKAVKLRR--DRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKG-LCSLCPTSNKSLL  151 (346)
T ss_pred             ceEEEEecccCcEEEEEEeccceeeEEEcC--CeEEEEecCeEEEEEcCCChhheeeeecccCCCc-eEeecCCCCceEE
Confidence            379999987888999999888888888865  4677788899999999854 3  23333322222 3355555444  3


Q ss_pred             E-EecCCCcEEEEEcCCcce--eeeccccCCceeEEEeCCC-CeEEEEeCCCc-EEEEeCCCCceEEEeeccCCCCcEEE
Q 022303          207 V-VGCEDGTARVFDMYSRKC--SQIIRMHCAPVTSLSLSED-QLIISGSSLGS-IAISGLSSDQRVATLRSTDCTGHIIC  281 (299)
Q Consensus       207 ~-s~~~d~~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~i~~  281 (299)
                      + -|-.-|.|.+-|+...+.  -..+..|...|.+++.+-+ .++||+|..|+ |||||..+|+++++++.......|.+
T Consensus       152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~  231 (346)
T KOG2111|consen  152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYC  231 (346)
T ss_pred             EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence            3 355679999999986555  3567799999999999977 99999999998 59999999999999986655458999


Q ss_pred             EEccCCCCeEEeeecc
Q 022303          282 LMYPQFLHMLFFLCFL  297 (299)
Q Consensus       282 ~~~s~~g~~l~s~s~~  297 (299)
                      ++|||+..+||++|--
T Consensus       232 iaFSp~~s~LavsSdK  247 (346)
T KOG2111|consen  232 IAFSPNSSWLAVSSDK  247 (346)
T ss_pred             EEeCCCccEEEEEcCC
Confidence            9999999999998853

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.56  E-value=2.5e-13  Score=106.06  Aligned_cols=93  Identities=22%  Similarity=0.261  Sum_probs=85.7

Q ss_pred             CCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCceEEEee---ccCCCC
Q 022303          203 DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLR---STDCTG  277 (299)
Q Consensus       203 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~  277 (299)
                      ++.+++|+.-|.|++.|+.+++....+.+|...|+.+.++|+  ++++++|.|.+|++|++++..++..+.   +|.+  
T Consensus       105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd--  182 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD--  182 (385)
T ss_pred             CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC--
Confidence            556888999999999999999999999999999999999998  799999999999999999999988874   5666  


Q ss_pred             cEEEEEccCCCCeEEeeecc
Q 022303          278 HIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       278 ~i~~~~~s~~g~~l~s~s~~  297 (299)
                      .|.++.|+++|.+++++++-
T Consensus       183 eVLSvD~~~~gd~i~ScGmD  202 (385)
T KOG1034|consen  183 EVLSVDFSLDGDRIASCGMD  202 (385)
T ss_pred             cEEEEEEcCCCCeeeccCCc
Confidence            89999999999999999863

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.56  E-value=5.4e-13  Score=105.76  Aligned_cols=150  Identities=17%  Similarity=0.242  Sum_probs=117.0

Q ss_pred             ccCeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecCC--Cc--eeEEEEecCCCEEE--E-EcCCeEEEEecCCce-
Q 022303          112 SVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLP--NA--ASLVDFDFDESKIV--G-LIGTRICIWRRNGLR-  183 (299)
Q Consensus       112 ~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~--~~~~~~~~~~~~l~--~-~~d~~i~v~d~~~~~-  183 (299)
                      ..+|.+|.+.-..|+.+-.+. |+|||+++.++++++..-  ++  ...+.+++.+.+++  + ...|.|.+||..+-+ 
T Consensus        87 pt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~  165 (391)
T KOG2110|consen   87 PTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP  165 (391)
T ss_pred             CCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee
Confidence            345656666555566666554 999999999999988743  22  22344455556887  3 446899999998765 


Q ss_pred             -eeeeccCCccceeeeeccCCCeEEEecCCCc-EEEEEcCCcceeeeccc--cCCceeEEEeCCC-CeEEEEeCCCcEEE
Q 022303          184 -SVFPSREGTFMKGLCMRYFDPEAVVGCEDGT-ARVFDMYSRKCSQIIRM--HCAPVTSLSLSED-QLIISGSSLGSIAI  258 (299)
Q Consensus       184 -~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~-~~l~~~~~dg~i~i  258 (299)
                       ..+..|.+... +++++++|..++++++.|+ |+++.+.+|+.+.+|+-  ....|.+++|+|+ ++|++.+..++|++
T Consensus       166 v~~I~aH~~~lA-alafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHi  244 (391)
T KOG2110|consen  166 VNTINAHKGPLA-ALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHI  244 (391)
T ss_pred             eeEEEecCCcee-EEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEE
Confidence             56677887765 6799999999999999998 68999999999999972  2456899999999 99999999999999


Q ss_pred             EeCCC
Q 022303          259 SGLSS  263 (299)
Q Consensus       259 wd~~~  263 (299)
                      |.+.+
T Consensus       245 FKL~~  249 (391)
T KOG2110|consen  245 FKLEK  249 (391)
T ss_pred             EEecc
Confidence            99864

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.55  E-value=1.5e-13  Score=116.85  Aligned_cols=190  Identities=12%  Similarity=0.067  Sum_probs=131.1

Q ss_pred             eEEeeccccCeeEEEe-cCC----EEEEEeCCCcEEEEecCCce--eEEEecCCCceeEEEEecCCCEEE-EEcCCeEEE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG----LILTGVGDKVMRLWSLEGYK--CVEEYSLPNAASLVDFDFDESKIV-GLIGTRICI  176 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~----~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v  176 (299)
                      ..++.||.++|+|+.+ |..    ++++|+.|+.|++|.++...  ++..++++ ....+++......+. .+.|+.+.+
T Consensus        47 ~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~-~~~~~cv~a~~~~~~~~~ad~~v~v  125 (764)
T KOG1063|consen   47 VTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGH-CKECVCVVARSSVMTCKAADGTVSV  125 (764)
T ss_pred             EEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCc-ceeEEEEEeeeeEEEeeccCceEEE
Confidence            5667999999999988 443    79999999999999998443  44455553 334455554444444 478999999


Q ss_pred             EecCCceee----eeccC-CccceeeeeccCCCe--EEEecCCCcEEEEEcCCc--ceeeeccccCCceeEEEeCC---C
Q 022303          177 WRRNGLRSV----FPSRE-GTFMKGLCMRYFDPE--AVVGCEDGTARVFDMYSR--KCSQIIRMHCAPVTSLSLSE---D  244 (299)
Q Consensus       177 ~d~~~~~~~----~~~~~-~~~~~~~~~~~~~~~--l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~---~  244 (299)
                      ||.+..+..    +.... ....-+++..++...  ++.|+.+..|.++.-.+.  +.+.++.+|.+.|.+++|..   +
T Consensus       126 w~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~  205 (764)
T KOG1063|consen  126 WDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGD  205 (764)
T ss_pred             eecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCC
Confidence            999655411    11111 111112333442222  667777888888865533  45677889999999999984   2


Q ss_pred             -CeEEEEeCCCcEEEEeCCCCc---------------------eEEE----------eeccCCCCcEEEEEccCCCCeEE
Q 022303          245 -QLIISGSSLGSIAISGLSSDQ---------------------RVAT----------LRSTDCTGHIICLMYPQFLHMLF  292 (299)
Q Consensus       245 -~~l~~~~~dg~i~iwd~~~~~---------------------~~~~----------~~~~~~~~~i~~~~~s~~g~~l~  292 (299)
                       -+|+++|.|..||||.+.-+.                     .+.+          +.+|.+  .|+++.|+|.+..|+
T Consensus       206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD--WV~sv~W~p~~~~LL  283 (764)
T KOG1063|consen  206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED--WVYSVWWHPEGLDLL  283 (764)
T ss_pred             cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc--ceEEEEEccchhhhe
Confidence             589999999999999874322                     1112          238888  999999999998888


Q ss_pred             eeecc
Q 022303          293 FLCFL  297 (299)
Q Consensus       293 s~s~~  297 (299)
                      ++|.-
T Consensus       284 SASaD  288 (764)
T KOG1063|consen  284 SASAD  288 (764)
T ss_pred             ecccC
Confidence            88764

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.54  E-value=5.6e-14  Score=118.60  Aligned_cols=169  Identities=13%  Similarity=0.159  Sum_probs=129.6

Q ss_pred             EeCCCcEEEEecCC-cee----EEEecCCCceeEEEEec-CCCEEE-EEcCCeEEEEecCCc---------eeeeeccCC
Q 022303          128 GVGDKVMRLWSLEG-YKC----VEEYSLPNAASLVDFDF-DESKIV-GLIGTRICIWRRNGL---------RSVFPSREG  191 (299)
Q Consensus       128 ~~~dg~i~iwd~~~-~~~----~~~~~~~~~~~~~~~~~-~~~~l~-~~~d~~i~v~d~~~~---------~~~~~~~~~  191 (299)
                      .+..|.|-|++++. |++    +-.+.....+..+.|+| |...|+ ++.||.|++|.+..+         ..++..|..
T Consensus       599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e  678 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE  678 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence            45678999999874 222    22333344455588887 556677 999999999998643         245566665


Q ss_pred             ccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc-eEE
Q 022303          192 TFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ-RVA  268 (299)
Q Consensus       192 ~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~  268 (299)
                      .+. .+.|+|.-.. |++++.|-+|++||+++++....+.+|.+.|..++|+|+ +.+|+.+.||+|++|..++++ .++
T Consensus       679 KI~-slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~  757 (1012)
T KOG1445|consen  679 KIT-SLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY  757 (1012)
T ss_pred             eEE-EEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc
Confidence            555 3477777555 889999999999999999998999999999999999999 999999999999999998864 455


Q ss_pred             EeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          269 TLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       269 ~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      .-++..+. .--.+.|..+|+++++.++.+
T Consensus       758 Eg~gpvgt-RgARi~wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  758 EGKGPVGT-RGARILWACDGRIVIVVGFDK  786 (1012)
T ss_pred             cCCCCccC-cceeEEEEecCcEEEEecccc
Confidence            54444433 456678888999999988754

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=2.2e-13  Score=121.05  Aligned_cols=175  Identities=19%  Similarity=0.314  Sum_probs=123.1

Q ss_pred             EEe--cCCEEEEEeCCCcEEEEecCCceeEEEecCCCcee--EEEEe-cCCCEEE-EEcCCeEEEEecCCce-----eee
Q 022303          118 CRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS--LVDFD-FDESKIV-GLIGTRICIWRRNGLR-----SVF  186 (299)
Q Consensus       118 ~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~-~~~~~l~-~~~d~~i~v~d~~~~~-----~~~  186 (299)
                      +.|  ..++|++++.-..|+|||....+.+..+.......  .+.-+ ..|+.++ |..||.|++||.+...     ...
T Consensus      1171 ~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY 1250 (1387)
T ss_pred             eehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee
Confidence            356  45578877778999999999888888777554332  33332 3457777 9999999999998543     334


Q ss_pred             eccCCc--cceeeeeccCCCe-EEEecCCCcEEEEEcCCcceee--ecccc---CCceeEEEeCCC-CeEEEEeCCCcEE
Q 022303          187 PSREGT--FMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQ--IIRMH---CAPVTSLSLSED-QLIISGSSLGSIA  257 (299)
Q Consensus       187 ~~~~~~--~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~--~~~~~---~~~i~~~~~~~~-~~l~~~~~dg~i~  257 (299)
                      ..|...  +. -..+.+.+-. +++|+.+|.|++||++......  .+..|   .+..+++..+++ ..+|+|+. +.|+
T Consensus      1251 R~h~~~~~Iv-~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ik 1328 (1387)
T KOG1517|consen 1251 REHNDVEPIV-HLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIK 1328 (1387)
T ss_pred             cccCCcccce-eEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEE
Confidence            444443  22 1245554443 9999999999999999742222  12222   235899999999 89999998 9999


Q ss_pred             EEeCCCCceEEEeeccCCC-----CcEEEEEccCCCCeEEeee
Q 022303          258 ISGLSSDQRVATLRSTDCT-----GHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       258 iwd~~~~~~~~~~~~~~~~-----~~i~~~~~s~~g~~l~s~s  295 (299)
                      ||++. |+.+..++.+...     +.+.|++|||-.-+||+|+
T Consensus      1329 Iy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~ 1370 (1387)
T KOG1517|consen 1329 IYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS 1370 (1387)
T ss_pred             EEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhcc
Confidence            99995 6666555543321     3789999999988888874

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.53  E-value=3.4e-14  Score=110.67  Aligned_cols=216  Identities=12%  Similarity=0.051  Sum_probs=153.6

Q ss_pred             CCCCCcchhccCcHHHHHHHhhcc--Cccchhh---HHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhh--
Q 022303           16 RSSKPRATIESLNGDIICMIFSSL--GFFDLVR---CSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEE--   88 (299)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~~~~--~h~~~v~---~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~--   88 (299)
                      +......-|.+|+.-+++.-.+|.  +|.+.++   |++|+|+|.+|+.           +      ...++|++..+  
T Consensus       127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-----------G------ykrcirvFdt~Rp  189 (406)
T KOG2919|consen  127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-----------G------YKRCIRVFDTSRP  189 (406)
T ss_pred             eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-----------c------ccceEEEeeccCC
Confidence            334456678899988887555554  7888775   5899999999885           1      22334444210  


Q ss_pred             hhhccccceeecCceeeEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCC
Q 022303           89 LAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDES  164 (299)
Q Consensus        89 ~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~  164 (299)
                      =+.-+....+..|.      .+..+-|.|++| |-+  .++.|+...++-|+.-....++..+-+|...+. ++|.++|+
T Consensus       190 Gr~c~vy~t~~~~k------~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn  263 (406)
T KOG2919|consen  190 GRDCPVYTTVTKGK------FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN  263 (406)
T ss_pred             CCCCcchhhhhccc------ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC
Confidence            00001111111111      245667788888 433  899999999999999888889988888876655 99999999


Q ss_pred             EEE-EEc-CCeEEEEecCCceee---eeccCCccce--eeeeccCCCeEEEecCCCcEEEEEcCC-cceeeeccccCCce
Q 022303          165 KIV-GLI-GTRICIWRRNGLRSV---FPSREGTFMK--GLCMRYFDPEAVVGCEDGTARVFDMYS-RKCSQIIRMHCAPV  236 (299)
Q Consensus       165 ~l~-~~~-d~~i~v~d~~~~~~~---~~~~~~~~~~--~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~i  236 (299)
                      .++ |+. +..|..||++.....   +..+.+....  .+.+.+.+..|++|+.||.|++||++. +..+..+..+...+
T Consensus       264 ~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~v  343 (406)
T KOG2919|consen  264 KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTV  343 (406)
T ss_pred             eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccc
Confidence            998 444 779999999976533   3333332221  356778888899999999999999998 66677777889999


Q ss_pred             eEEEeCCC-CeEEEEeCCC
Q 022303          237 TSLSLSED-QLIISGSSLG  254 (299)
Q Consensus       237 ~~~~~~~~-~~l~~~~~dg  254 (299)
                      +.++++|- .++++++...
T Consensus       344 NgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  344 NGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             cceecCcccceeeeccCce
Confidence            99999999 8888887644

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.52  E-value=2.8e-13  Score=115.21  Aligned_cols=181  Identities=13%  Similarity=0.142  Sum_probs=135.2

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCC-----cEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDK-----VMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRIC  175 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~  175 (299)
                      ++.+.||.-.|++++. |++ +++|+....     .|++|+..+...++.+.+|+-.+. ++|+||+++|+ ++.|.++.
T Consensus       518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s  597 (764)
T KOG1063|consen  518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS  597 (764)
T ss_pred             hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEE
Confidence            3445799999999998 455 888887654     699999999888888999986666 99999999999 99999999


Q ss_pred             EEecCCce---eeeeccCC--ccceeeeeccCCCeEEEecCCCcEEEEEcCCc--ceeeec--cccCCceeEEEeCCC--
Q 022303          176 IWRRNGLR---SVFPSREG--TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR--KCSQII--RMHCAPVTSLSLSED--  244 (299)
Q Consensus       176 v~d~~~~~---~~~~~~~~--~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~--~~~~~~i~~~~~~~~--  244 (299)
                      +|......   ..+.....  .+.+...|+|++.++++++.|++|++|.....  +.+..+  ..+...|+.+++.|-  
T Consensus       598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~  677 (764)
T KOG1063|consen  598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDH  677 (764)
T ss_pred             eeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccc
Confidence            99986442   22222222  23334578999999999999999999998876  444332  257788999999862  


Q ss_pred             ----CeEEEEeCCCcEEEEeCCC-------Cce-----EEEeeccCCCCcEEEEEccCC
Q 022303          245 ----QLIISGSSLGSIAISGLSS-------DQR-----VATLRSTDCTGHIICLMYPQF  287 (299)
Q Consensus       245 ----~~l~~~~~dg~i~iwd~~~-------~~~-----~~~~~~~~~~~~i~~~~~s~~  287 (299)
                          ..+++|-+.|.|.+|....       +.-     +....++..  .|+.+.|.|.
T Consensus       678 ~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--aV~rl~w~p~  734 (764)
T KOG1063|consen  678 NEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDS--AVNRLLWRPT  734 (764)
T ss_pred             ccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHH--hhheeEeccc
Confidence                2788899999999999641       110     111123333  7999999975

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.52  E-value=1.8e-13  Score=113.44  Aligned_cols=167  Identities=16%  Similarity=0.104  Sum_probs=133.8

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeecc
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY  201 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  201 (299)
                      .++.++.||.+.+-+ +.++....+..|...+. -.|+|+|.-|+ ++.||.|++|.-.+.....-...+....+.+|.|
T Consensus        77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p  155 (737)
T KOG1524|consen   77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAP  155 (737)
T ss_pred             eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECC
Confidence            788889999998876 45777778888876665 89999999999 9999999999987764333333333444678999


Q ss_pred             CCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEE
Q 022303          202 FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHII  280 (299)
Q Consensus       202 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~  280 (299)
                      ++..++-+. .+.+.|=.+.....+-.++.|.+-|.++.|++. +++++|++|-..++||- .|+.+.+-..|+.  +|+
T Consensus       156 ~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey--~IT  231 (737)
T KOG1524|consen  156 NSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEY--AIT  231 (737)
T ss_pred             CCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhcc--cee
Confidence            988855443 355666666666666778899999999999998 99999999999999997 4888888888888  999


Q ss_pred             EEEccCCCCeEEeeec
Q 022303          281 CLMYPQFLHMLFFLCF  296 (299)
Q Consensus       281 ~~~~s~~g~~l~s~s~  296 (299)
                      +++|.|+ +.++.+|+
T Consensus       232 Sva~npd-~~~~v~S~  246 (737)
T KOG1524|consen  232 SVAFNPE-KDYLLWSY  246 (737)
T ss_pred             eeeeccc-cceeeeee
Confidence            9999999 77777765

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.52  E-value=1.7e-11  Score=104.94  Aligned_cols=188  Identities=21%  Similarity=0.282  Sum_probs=143.2

Q ss_pred             eeeEEeeccccCeeEEEe-cCC-EEEEEeC-CCcEEEEecCCceeEEEecCCCceeE-EEEecCCC-EEEE-EcCCeEEE
Q 022303          103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVG-DKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDES-KIVG-LIGTRICI  176 (299)
Q Consensus       103 ~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~l~~-~~d~~i~v  176 (299)
                      .....+..|...|..+.| +++ .+++++. |+.+++|+..+++.+..+..|...+. ++++|++. .+++ +.|+.+++
T Consensus       146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  225 (466)
T COG2319         146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL  225 (466)
T ss_pred             eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence            345667899999999998 555 7888875 99999999999888888887765555 99999988 4554 88999999


Q ss_pred             EecCCceee---eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcce-eeeccccCCceeEEEeCCC-CeEEEEe
Q 022303          177 WRRNGLRSV---FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED-QLIISGS  251 (299)
Q Consensus       177 ~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~-~~l~~~~  251 (299)
                      ||.......   +..+....  ...+.+.+..+++++.|+.+++|+.+.... +..+..|...+.++.+.|+ ..+++++
T Consensus       226 wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  303 (466)
T COG2319         226 WDLSTGKLLRSTLSGHSDSV--VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS  303 (466)
T ss_pred             EECCCCcEEeeecCCCCcce--eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee
Confidence            988855432   22333221  227888887788999999999999987654 4444577889999999997 7777788


Q ss_pred             CCCcEEEEeCCCCceEEEee--ccCCCCcEEEEEccCCCCeEEee
Q 022303          252 SLGSIAISGLSSDQRVATLR--STDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       252 ~dg~i~iwd~~~~~~~~~~~--~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      .|+.+.+||..+........  .+..  .+..+.|.+++..++.+
T Consensus       304 ~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  346 (466)
T COG2319         304 SDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSLLVSG  346 (466)
T ss_pred             CCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCEEEEe
Confidence            89999999998887766665  5555  68999884333455554

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.51  E-value=4.7e-13  Score=110.88  Aligned_cols=160  Identities=13%  Similarity=0.123  Sum_probs=116.2

Q ss_pred             ccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-E-EcCCeEEEEecCCceeee
Q 022303          112 SVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGTRICIWRRNGLRSVF  186 (299)
Q Consensus       112 ~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~d~~i~v~d~~~~~~~~  186 (299)
                      +..|+|+.| +.+  .++.+-.+|.+.++|..-       ............+++..+. . +....-     +++...+
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~ksk~~-----rNPv~~w  286 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSKSKKT-----RNPVARW  286 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeeecccc-----CCcccee
Confidence            367899988 433  888888999999998621       1111111122223333332 1 111000     0222222


Q ss_pred             eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc
Q 022303          187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ  265 (299)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~  265 (299)
                      ..-++.+. .+++++++.+|++.+.||.++|||..+.+.+..++..-+...|++|+|| ++|++|++|.-|.||.+...+
T Consensus       287 ~~~~g~in-~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR  365 (636)
T KOG2394|consen  287 HIGEGSIN-EFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR  365 (636)
T ss_pred             Eecccccc-ceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccce
Confidence            22223333 4689999999999999999999999999988888888888999999999 999999999999999999999


Q ss_pred             eEEEeeccCCCCcEEEEEccC
Q 022303          266 RVATLRSTDCTGHIICLMYPQ  286 (299)
Q Consensus       266 ~~~~~~~~~~~~~i~~~~~s~  286 (299)
                      .+..-++|..  .|..++|+|
T Consensus       366 VVARGqGHkS--WVs~VaFDp  384 (636)
T KOG2394|consen  366 VVARGQGHKS--WVSVVAFDP  384 (636)
T ss_pred             EEEecccccc--ceeeEeecc
Confidence            9999999998  999999996

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.51  E-value=2.4e-13  Score=108.87  Aligned_cols=145  Identities=16%  Similarity=0.161  Sum_probs=119.0

Q ss_pred             cCCCceeEEEEecCCC-EEE-EEcCCeEEEEecCCce-----------eeeeccCCccceeeeeccCCCeEEEecCCCcE
Q 022303          149 SLPNAASLVDFDFDES-KIV-GLIGTRICIWRRNGLR-----------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTA  215 (299)
Q Consensus       149 ~~~~~~~~~~~~~~~~-~l~-~~~d~~i~v~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i  215 (299)
                      ..|+++..+.|.++.. .++ ++.|..|++|.+....           ..+..|...++ ++.|++.+..+++|+++|.+
T Consensus        11 H~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN-~vRf~p~gelLASg~D~g~v   89 (434)
T KOG1009|consen   11 HDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVN-VVRFSPDGELLASGGDGGEV   89 (434)
T ss_pred             cCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeE-EEEEcCCcCeeeecCCCceE
Confidence            3567777799988776 788 9999999999886432           22344554544 56899999999999999999


Q ss_pred             EEEEcC--------C--------cceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCc
Q 022303          216 RVFDMY--------S--------RKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGH  278 (299)
Q Consensus       216 ~iwd~~--------~--------~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  278 (299)
                      .+|-..        +        ......+.+|...|..++|+|+ .++++++.|.++++||+..|..+..+..|..  .
T Consensus        90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~--y  167 (434)
T KOG1009|consen   90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH--Y  167 (434)
T ss_pred             EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc--c
Confidence            999866        2        2234455588899999999999 9999999999999999999999999999988  8


Q ss_pred             EEEEEccCCCCeEEeeec
Q 022303          279 IICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       279 i~~~~~s~~g~~l~s~s~  296 (299)
                      ++.++|.|-++++++-|.
T Consensus       168 vqgvawDpl~qyv~s~s~  185 (434)
T KOG1009|consen  168 VQGVAWDPLNQYVASKSS  185 (434)
T ss_pred             cceeecchhhhhhhhhcc
Confidence            999999999999887553

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=5.5e-13  Score=106.66  Aligned_cols=188  Identities=11%  Similarity=0.113  Sum_probs=136.5

Q ss_pred             EEeeccccCeeEEEec-CC-EEEEEeCCCcEEEEecC------CceeEEEecCC--CceeEEEEecCCCEEE-EEcCCeE
Q 022303          106 DQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLE------GYKCVEEYSLP--NAASLVDFDFDESKIV-GLIGTRI  174 (299)
Q Consensus       106 ~~~~~h~~~i~~~~~~-~~-~l~s~~~dg~i~iwd~~------~~~~~~~~~~~--~~~~~~~~~~~~~~l~-~~~d~~i  174 (299)
                      +-+.+|.+.|+++.|+ ++ .|++|+.|..+++|++.      +.+++.....|  ..+.+++|...++.++ |..+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            3447999999999994 44 99999999999999975      34666655543  4667799999888888 9999999


Q ss_pred             EEEecCCceeeee-ccCCc--cceeeeeccCCCeEEEecCCCcEEEEEcCCcc-eeeec--cccCCceeEEEeCCC--Ce
Q 022303          175 CIWRRNGLRSVFP-SREGT--FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-CSQII--RMHCAPVTSLSLSED--QL  246 (299)
Q Consensus       175 ~v~d~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~--~~~~~~i~~~~~~~~--~~  246 (299)
                      ...|+.+.+.+.. .+...  ....+..+|.++.+++.+.++.|.+||.+... .+..+  ........++-|+|.  .+
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence            9999998874432 22221  12245778888889999999999999998654 22222  234556788899997  79


Q ss_pred             EEEEeCCCcEEEEeCCCCc-eEEEeeccCC----CCcEEEEEccCCCCeEEe
Q 022303          247 IISGSSLGSIAISGLSSDQ-RVATLRSTDC----TGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       247 l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~----~~~i~~~~~s~~g~~l~s  293 (299)
                      |++++..+-+-+||++..+ .+.......+    ...-.++.|+|+|..|.+
T Consensus       210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ms  261 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMS  261 (609)
T ss_pred             EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehh
Confidence            9999999999999998643 2222211111    013467889998887654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.51  E-value=2.5e-14  Score=116.35  Aligned_cols=174  Identities=13%  Similarity=0.061  Sum_probs=139.7

Q ss_pred             cCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccC
Q 022303          113 VGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSRE  190 (299)
Q Consensus       113 ~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~  190 (299)
                      ..|.++.| .+..++.......++||| ..|..++.++.+..+..+.|-|..-+|+ ++..|.++.-|+.+++.+.....
T Consensus       171 Etv~Dv~~LHneq~~AVAQK~y~yvYD-~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t  249 (545)
T KOG1272|consen  171 ETVRDVTFLHNEQFFAVAQKKYVYVYD-NNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT  249 (545)
T ss_pred             hhhhhhhhhcchHHHHhhhhceEEEec-CCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc
Confidence            34555656 455555556677889998 4588899999888888899999988888 88899999999998874433222


Q ss_pred             C-ccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEE
Q 022303          191 G-TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVA  268 (299)
Q Consensus       191 ~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~  268 (299)
                      + ....+++-+|.+.-+-.|...|+|.+|...+.+++..+..|.++|.++++.++ .+++|.+.|..++|||+++-..+.
T Consensus       250 ~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~  329 (545)
T KOG1272|consen  250 GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH  329 (545)
T ss_pred             cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc
Confidence            2 12235677777777889999999999999999999888899999999999999 999999999999999999988777


Q ss_pred             EeeccCCCCcEEEEEccCCCCe
Q 022303          269 TLRSTDCTGHIICLMYPQFLHM  290 (299)
Q Consensus       269 ~~~~~~~~~~i~~~~~s~~g~~  290 (299)
                      ++....   +...++||..|.+
T Consensus       330 t~~tp~---~a~~ls~SqkglL  348 (545)
T KOG1272|consen  330 TYRTPH---PASNLSLSQKGLL  348 (545)
T ss_pred             eeecCC---Cccccccccccce
Confidence            776633   6788899876643

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.50  E-value=1.1e-12  Score=113.41  Aligned_cols=185  Identities=16%  Similarity=0.147  Sum_probs=130.3

Q ss_pred             cccCeeEEEe-c--CCEEEEEeCCCcEEEEecCCcee--EEEe-----cCCCceeEEEEecCCCE--EE-EEcCCeEEEE
Q 022303          111 HSVGVDQCRM-K--RGLILTGVGDKVMRLWSLEGYKC--VEEY-----SLPNAASLVDFDFDESK--IV-GLIGTRICIW  177 (299)
Q Consensus       111 h~~~i~~~~~-~--~~~l~s~~~dg~i~iwd~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~--l~-~~~d~~i~v~  177 (299)
                      -...|.++.| +  ..+++.|..+|.|.+||+..+..  ...+     .+..+++.+.|..+...  ++ ++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            4568888888 3  33999999999999999987654  2222     13345555777554433  66 8889999999


Q ss_pred             ecCCce--------------------------------------------ee---------------ee------ccCCc
Q 022303          178 RRNGLR--------------------------------------------SV---------------FP------SREGT  192 (299)
Q Consensus       178 d~~~~~--------------------------------------------~~---------------~~------~~~~~  192 (299)
                      +++.-.                                            .+               ++      .+.+.
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            875400                                            00               01      11111


Q ss_pred             cceeeeeccCCCeEEEecCCCcEEEEEcC-CcceeeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCC--ceE
Q 022303          193 FMKGLCMRYFDPEAVVGCEDGTARVFDMY-SRKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSD--QRV  267 (299)
Q Consensus       193 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~--~~~  267 (299)
                      .. ++.++|....++..+.|.++++|... ...++..+..+...+++++|||.  ..++++..||.|.+||+...  +++
T Consensus       401 v~-~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv  479 (555)
T KOG1587|consen  401 VY-AVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV  479 (555)
T ss_pred             eE-eeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence            11 23456666654444449999999988 66777777778888999999998  68999999999999999754  445


Q ss_pred             EEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          268 ATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       268 ~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      .+......  ..+.+.|+++|+.|++|...|
T Consensus       480 ~s~~~~~~--~l~~~~~s~~g~~lavGd~~G  508 (555)
T KOG1587|consen  480 LSQKVCSP--ALTRVRWSPNGKLLAVGDANG  508 (555)
T ss_pred             cccccccc--ccceeecCCCCcEEEEecCCC
Confidence            55555543  778889999999999998765

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=1.6e-12  Score=115.76  Aligned_cols=185  Identities=19%  Similarity=0.208  Sum_probs=131.6

Q ss_pred             ccCeeEEEe-c--CC-EEEEEeCCCcEEEEecC-C----ceeEEEecC--------CCceeEEEEecCCCEEE-EEcCCe
Q 022303          112 SVGVDQCRM-K--RG-LILTGVGDKVMRLWSLE-G----YKCVEEYSL--------PNAASLVDFDFDESKIV-GLIGTR  173 (299)
Q Consensus       112 ~~~i~~~~~-~--~~-~l~s~~~dg~i~iwd~~-~----~~~~~~~~~--------~~~~~~~~~~~~~~~l~-~~~d~~  173 (299)
                      ...|+.+.+ +  +. ++++|+.||.|+||+-- +    .+.+..+..        .+....++|.....+|+ ++.-..
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence            456888877 2  22 99999999999999742 2    234433321        11223377776666666 555789


Q ss_pred             EEEEecCCceeeeeccCCccceeeeeccC---CCeEEEecCCCcEEEEEcCCcc---eeeeccccCCc--eeEEEeCCC-
Q 022303          174 ICIWRRNGLRSVFPSREGTFMKGLCMRYF---DPEAVVGCEDGTARVFDMYSRK---CSQIIRMHCAP--VTSLSLSED-  244 (299)
Q Consensus       174 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~--i~~~~~~~~-  244 (299)
                      |+|||..........+.+....+.+++.+   ++.+++|..||.|++||.+...   .+...+.|+..  |..+.+.+. 
T Consensus      1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred             EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence            99999998876666555554445555554   4569999999999999988643   45666778777  999999885 


Q ss_pred             -CeEEEEeCCCcEEEEeCCCCceEEE--eeccCC-CCcEEEEEccCCCCeEEeeec
Q 022303          245 -QLIISGSSLGSIAISGLSSDQRVAT--LRSTDC-TGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       245 -~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~-~~~i~~~~~s~~g~~l~s~s~  296 (299)
                       ..|++|+.||.|++||++.......  +..|.. +...+++..|++...+|+|+-
T Consensus      1269 ~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred             CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence             6799999999999999997433222  222221 115999999999999999983

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.49  E-value=4.1e-12  Score=97.10  Aligned_cols=136  Identities=9%  Similarity=0.086  Sum_probs=96.1

Q ss_pred             eEEEEecCCCEEE--EEcC---------CeEEEEecCC--ce-eeeeccCCccceeeeeccCCCeEE--EecCCCcEEEE
Q 022303          155 SLVDFDFDESKIV--GLIG---------TRICIWRRNG--LR-SVFPSREGTFMKGLCMRYFDPEAV--VGCEDGTARVF  218 (299)
Q Consensus       155 ~~~~~~~~~~~l~--~~~d---------~~i~v~d~~~--~~-~~~~~~~~~~~~~~~~~~~~~~l~--s~~~d~~i~iw  218 (299)
                      ..+.|+++|+.|+  ...+         +...+|.++.  .. ..+..........++|+|++..++  .|..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            4588888888876  3311         2344554432  22 223222222233569999999854  35567899999


Q ss_pred             EcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC---CCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          219 DMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS---LGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       219 d~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      |++ ++.+..+.  ...++.+.|+|+ +++++++.   .|.|.+||+++.+.+.+....    .++.++|+|||++|+++
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~----~~t~~~WsPdGr~~~ta  161 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS----DATDVEWSPDGRYLATA  161 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC----cEEEEEEcCCCCEEEEE
Confidence            997 66666663  567889999999 99998875   467999999988888776432    57899999999999998


Q ss_pred             ecc
Q 022303          295 CFL  297 (299)
Q Consensus       295 s~~  297 (299)
                      +..
T Consensus       162 ~t~  164 (194)
T PF08662_consen  162 TTS  164 (194)
T ss_pred             Eec
Confidence            764

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.49  E-value=2e-12  Score=100.81  Aligned_cols=185  Identities=14%  Similarity=0.101  Sum_probs=140.6

Q ss_pred             EeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCc---eeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEec
Q 022303          107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY---KCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRR  179 (299)
Q Consensus       107 ~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~  179 (299)
                      .++--.++|+|.+| ++. .++.+-....|.||.....   +..+++..|+..+. ++|+|..+.|+ ++.|..-++|..
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence            34455679999999 555 8999999999999998754   46778888877776 99999999999 999999999998


Q ss_pred             CC-ce----eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcce---ee-eccccCCceeEEEeCCC-CeEEE
Q 022303          180 NG-LR----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC---SQ-IIRMHCAPVTSLSLSED-QLIIS  249 (299)
Q Consensus       180 ~~-~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~-~~~~~~~~i~~~~~~~~-~~l~~  249 (299)
                      .. +.    .++..+..... .+.|+|.++.+++|+....|.+|-.+....   .. .-+.+...|+++.|+|+ -+|++
T Consensus        85 ~~~~~WkptlvLlRiNrAAt-~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa  163 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAAT-CVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA  163 (361)
T ss_pred             CCCCeeccceeEEEecccee-eEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence            43 32    33344444433 568999999999999999999998774321   11 22356788999999999 78999


Q ss_pred             EeCCCcEEEEeCC------------------CCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          250 GSSLGSIAISGLS------------------SDQRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       250 ~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      |+.|+..+++..-                  -|+++.++....+  .|..+.|+|+|..|+-.
T Consensus       164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~gg--wvh~v~fs~sG~~lawv  224 (361)
T KOG1523|consen  164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGG--WVHGVLFSPSGNRLAWV  224 (361)
T ss_pred             cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCC--ceeeeEeCCCCCEeeEe
Confidence            9999999998642                  1334444443333  89999999999988743

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.49  E-value=3.4e-12  Score=115.20  Aligned_cols=194  Identities=13%  Similarity=0.138  Sum_probs=138.9

Q ss_pred             ceeeEEeeccccCeeEEEe--cCC-EEEEEeCCCcEEEEecCCc-------eeEEEec-CCCceeEEEEecCCCEEE-EE
Q 022303          102 RIDIDQWKAHSVGVDQCRM--KRG-LILTGVGDKVMRLWSLEGY-------KCVEEYS-LPNAASLVDFDFDESKIV-GL  169 (299)
Q Consensus       102 ~~~~~~~~~h~~~i~~~~~--~~~-~l~s~~~dg~i~iwd~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~l~-~~  169 (299)
                      +..+..++.|...|..++.  +++ +++|||.||+|++||...-       +...++. ..+.+..+.+.+.+..++ ++
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence            3346778899999998877  342 9999999999999997631       2333444 334455588888999999 99


Q ss_pred             cCCeEEEEecCCc--ee-------eee-ccCCccceeeeeccCC--CeEEEecCCCcEEEEEcCCcceeeecc--ccCCc
Q 022303          170 IGTRICIWRRNGL--RS-------VFP-SREGTFMKGLCMRYFD--PEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAP  235 (299)
Q Consensus       170 ~d~~i~v~d~~~~--~~-------~~~-~~~~~~~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~  235 (299)
                      .||.|.+.++...  ..       +.. ...+......++....  ..++.+...+.|..||+++......++  ...+.
T Consensus      1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred             CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence            9999999998752  11       011 1112222222222222  247778888999999999877665554  44578


Q ss_pred             eeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCC---CeEEeeec
Q 022303          236 VTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL---HMLFFLCF  296 (299)
Q Consensus       236 i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~~l~s~s~  296 (299)
                      |++++.+|. .+++.|+..|.+.+||++=+.++..+...... +|+.+..+|-.   ...++++.
T Consensus      1198 vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~-~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARA-PIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred             eeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccC-CcceEEeeccCCCCceEEEecc
Confidence            999999999 99999999999999999999988888765543 88888887743   45555554

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.49  E-value=1.4e-13  Score=116.23  Aligned_cols=134  Identities=19%  Similarity=0.283  Sum_probs=106.5

Q ss_pred             cCCCEEE---EEcCCeEEEEecCCcee----eeec-cCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCc-------c
Q 022303          161 FDESKIV---GLIGTRICIWRRNGLRS----VFPS-REGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSR-------K  224 (299)
Q Consensus       161 ~~~~~l~---~~~d~~i~v~d~~~~~~----~~~~-~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~-------~  224 (299)
                      .+...++   ++..|.|-||+++.+..    ++.. ..+....-+.|.|+++. |+.+++||.|++|.+..+       +
T Consensus       589 an~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t  668 (1012)
T KOG1445|consen  589 ANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMT  668 (1012)
T ss_pred             eccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCC
Confidence            3444444   66789999999987642    2222 22222223567777665 999999999999998754       2


Q ss_pred             eeeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          225 CSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       225 ~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ....+..|...|+++.|+|=  ..|+++++|-+|++||+++++....+.+|.+  .|.+++|||+|+.+|+.+-
T Consensus       669 Pe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd--qIf~~AWSpdGr~~AtVcK  740 (1012)
T KOG1445|consen  669 PEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD--QIFGIAWSPDGRRIATVCK  740 (1012)
T ss_pred             cceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC--ceeEEEECCCCcceeeeec
Confidence            34556689999999999995  8999999999999999999999999999999  8999999999999998764

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.49  E-value=3.3e-12  Score=102.05  Aligned_cols=190  Identities=12%  Similarity=0.087  Sum_probs=147.4

Q ss_pred             EEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCce----eEEEecCCCceeEEEEecCCCEEE--EEcC--CeEEEE
Q 022303          106 DQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYK----CVEEYSLPNAASLVDFDFDESKIV--GLIG--TRICIW  177 (299)
Q Consensus       106 ~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~--~~~d--~~i~v~  177 (299)
                      .+....+++|..+...++.|++|-.+|.+.+|..+.+.    ....+..+.+...+.-++....++  |+..  ..+.+|
T Consensus        99 ~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiw  178 (412)
T KOG3881|consen   99 KTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIW  178 (412)
T ss_pred             cccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeee
Confidence            34456677788888888899999999999999988443    344555566666677777666655  6666  689999


Q ss_pred             ecCCceeeeeccCCcc--------ceee--eeccC--CCeEEEecCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC
Q 022303          178 RRNGLRSVFPSREGTF--------MKGL--CMRYF--DPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED  244 (299)
Q Consensus       178 d~~~~~~~~~~~~~~~--------~~~~--~~~~~--~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~  244 (299)
                      |+.+.+.++....-..        .+..  .|-+.  ...|+++..-+.+++||.+.+ +++..|.-...+++++...|+
T Consensus       179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~  258 (412)
T KOG3881|consen  179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPS  258 (412)
T ss_pred             ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCC
Confidence            9998876665432211        1122  23333  334999999999999999875 467778777889999999999


Q ss_pred             -CeEEEEeCCCcEEEEeCCCCceEEE-eeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          245 -QLIISGSSLGSIAISGLSSDQRVAT-LRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       245 -~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                       +++.+|..-|.+..||++.++.+.. +++-.+  .|+++-.+|++++|+++++-
T Consensus       259 gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG--sirsih~hp~~~~las~GLD  311 (412)
T KOG3881|consen  259 GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG--SIRSIHCHPTHPVLASCGLD  311 (412)
T ss_pred             CcEEEEecccchhheecccCceeeccccCCccC--CcceEEEcCCCceEEeeccc
Confidence             9999999999999999999998877 777777  89999999999999999975

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=8e-13  Score=103.75  Aligned_cols=164  Identities=16%  Similarity=0.285  Sum_probs=120.9

Q ss_pred             eEEeeccccCeeEEEe-cC-C--EEEEEeCCCcEEEEecCCceeEEEec--CCC--ceeEEEEecCCCEEE-EEc----C
Q 022303          105 IDQWKAHSVGVDQCRM-KR-G--LILTGVGDKVMRLWSLEGYKCVEEYS--LPN--AASLVDFDFDESKIV-GLI----G  171 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~-~--~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~-~~~----d  171 (299)
                      +..+++|...++.+.| .+ .  .+.+|+.||+|++||+++......+.  .+.  +-++++....++.++ ++.    +
T Consensus        63 l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~  142 (376)
T KOG1188|consen   63 LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSD  142 (376)
T ss_pred             hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCc
Confidence            4556899999999988 32 3  89999999999999999876555444  333  223344444666776 432    4


Q ss_pred             CeEEEEecCCcee----eeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcc----eeeeccccCCceeEEEeC
Q 022303          172 TRICIWRRNGLRS----VFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK----CSQIIRMHCAPVTSLSLS  242 (299)
Q Consensus       172 ~~i~v~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~i~~~~~~  242 (299)
                      -.|.+||.+..+.    ....|...+. .++|+|.++. |++|+.||.|.+||+....    .+.++ .+...|..+.|.
T Consensus       143 A~v~lwDvR~~qq~l~~~~eSH~DDVT-~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~  220 (376)
T KOG1188|consen  143 ASVVLWDVRSEQQLLRQLNESHNDDVT-QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWL  220 (376)
T ss_pred             eEEEEEEeccccchhhhhhhhccCcce-eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeee
Confidence            5899999997754    3455666555 4589998877 8999999999999987532    22333 567779999998


Q ss_pred             CC--CeEEEEeCCCcEEEEeCCCCceEEEe
Q 022303          243 ED--QLIISGSSLGSIAISGLSSDQRVATL  270 (299)
Q Consensus       243 ~~--~~l~~~~~dg~i~iwd~~~~~~~~~~  270 (299)
                      .+  +.+.+-+..++..+|+++.+.+...+
T Consensus       221 ~~~ykrI~clTH~Etf~~~ele~~~~~~~~  250 (376)
T KOG1188|consen  221 SKKYKRIMCLTHMETFAIYELEDGSEETWL  250 (376)
T ss_pred             cCCcceEEEEEccCceeEEEccCCChhhcc
Confidence            66  68999999999999999887654444

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=9e-12  Score=107.55  Aligned_cols=183  Identities=11%  Similarity=-0.012  Sum_probs=118.1

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCC---CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EE-cCCeE--E
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRI--C  175 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~d~~i--~  175 (299)
                      .+.+..|...+....| |++ .|+..+.+   ..|++||+.+++..............+|+||++.|+ +. .+|.+  +
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy  275 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIY  275 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEE
Confidence            4455678888999999 666 77776644   369999999876433222222233589999999888 43 57754  4


Q ss_pred             EEecCCce-eeeeccCCccceeeeeccCCCeEEEe-cCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC-CeEEEEe
Q 022303          176 IWRRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVG-CEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGS  251 (299)
Q Consensus       176 v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~  251 (299)
                      +||+.++. ..+..... ......|++++..++.. ..++...+|+++.. .....+ .+..  ....|+|+ ++|+..+
T Consensus       276 ~~d~~~~~~~~lt~~~~-~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~  351 (429)
T PRK01742        276 VMGANGGTPSQLTSGAG-NNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMIN  351 (429)
T ss_pred             EEECCCCCeEeeccCCC-CcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEc
Confidence            55665553 22222222 22246899999986644 45788888876532 222222 3333  45789999 8888877


Q ss_pred             CCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          252 SLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       252 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      .++ +.+||+.+++....... .   ...++.|+|+|++|+.++.
T Consensus       352 ~~~-i~~~Dl~~g~~~~lt~~-~---~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        352 GDN-VVKQDLTSGSTEVLSST-F---LDESPSISPNGIMIIYSST  391 (429)
T ss_pred             CCC-EEEEECCCCCeEEecCC-C---CCCCceECCCCCEEEEEEc
Confidence            755 66699988875432222 1   3356789999999998764

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.47  E-value=6.8e-13  Score=103.35  Aligned_cols=223  Identities=13%  Similarity=0.124  Sum_probs=155.4

Q ss_pred             cchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecC-ceeeEEeeccccCeeEEEe
Q 022303           42 FDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEG-RIDIDQWKAHSVGVDQCRM  120 (299)
Q Consensus        42 ~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g-~~~~~~~~~h~~~i~~~~~  120 (299)
                      .+.|+|.+++++...+|.                .+..+.+.+|-.      .    ... -...++++.|...|+++.|
T Consensus        10 ~~pitchAwn~drt~iAv----------------~~~~~evhiy~~------~----~~~~w~~~htls~Hd~~vtgvdW   63 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAV----------------SPNNHEVHIYSM------L----GADLWEPAHTLSEHDKIVTGVDW   63 (361)
T ss_pred             cCceeeeeecCCCceEEe----------------ccCCceEEEEEe------c----CCCCceeceehhhhCcceeEEee
Confidence            356788888888888875                223333344411      0    111 1236778999999999999


Q ss_pred             -cCC-EEEEEeCCCcEEEEec-CCceeEE---EecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCce------eeee
Q 022303          121 -KRG-LILTGVGDKVMRLWSL-EGYKCVE---EYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR------SVFP  187 (299)
Q Consensus       121 -~~~-~l~s~~~dg~i~iwd~-~~~~~~~---~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~------~~~~  187 (299)
                       +.. .|++++.|..-++|.. ..++...   .++.......+.|+|.++.++ ++....|.||-++...      .+..
T Consensus        64 ap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikk  143 (361)
T KOG1523|consen   64 APKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKK  143 (361)
T ss_pred             cCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCC
Confidence             444 9999999999999998 4444322   233555667799999999999 8889999998887654      1222


Q ss_pred             ccCCccceeeeeccCCCeEEEecCCCcEEEEEcC-----C-------------cceeeeccccCCceeEEEeCCC-CeEE
Q 022303          188 SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY-----S-------------RKCSQIIRMHCAPVTSLSLSED-QLII  248 (299)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-----~-------------~~~~~~~~~~~~~i~~~~~~~~-~~l~  248 (299)
                      ..... ...++|++++-.+++|+.|++.+++...     +             |+.+.++....+.+..+.|+|+ ..|+
T Consensus       144 PirSt-v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~la  222 (361)
T KOG1523|consen  144 PIRST-VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLA  222 (361)
T ss_pred             ccccc-eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEee
Confidence            22222 2356899988889999999999998742     1             2344445456788999999998 9999


Q ss_pred             EEeCCCcEEEEeCCCCc-eEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022303          249 SGSSLGSIAISGLSSDQ-RVATLRSTDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       249 ~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      -.+.|..+.+-|..... .+.++....-  +..++.|-.+...+++
T Consensus       223 wv~Hds~v~~~da~~p~~~v~~~~~~~l--P~ls~~~ise~~vv~a  266 (361)
T KOG1523|consen  223 WVGHDSTVSFVDAAGPSERVQSVATAQL--PLLSVSWISENSVVAA  266 (361)
T ss_pred             EecCCCceEEeecCCCchhccchhhccC--CceeeEeecCCceeec
Confidence            99999999999976543 3444444443  6777777655444433

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.43  E-value=2.5e-11  Score=101.84  Aligned_cols=167  Identities=14%  Similarity=0.170  Sum_probs=130.1

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecC----CCceeEEEE------e--------------cCCCEEE-EEcCCeEEEEe
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSL----PNAASLVDF------D--------------FDESKIV-GLIGTRICIWR  178 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~------~--------------~~~~~l~-~~~d~~i~v~d  178 (299)
                      |+|....||.+++||..+++....|..    .+..+...|      +              .+...++ |...|.|.+|+
T Consensus         7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys   86 (541)
T KOG4547|consen    7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS   86 (541)
T ss_pred             eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence            899999999999999999887776652    122222222      1              1233466 99999999999


Q ss_pred             cCCceeeee----ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCC
Q 022303          179 RNGLRSVFP----SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL  253 (299)
Q Consensus       179 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d  253 (299)
                      ...++....    .|.+.+. ++-++..-..|.+++.|+.+..|+..+...++.+......+.+++.+|| ..+++++  
T Consensus        87 ~~~g~it~~~st~~h~~~v~-~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--  163 (541)
T KOG4547|consen   87 VAGGEITAKLSTDKHYGNVN-EILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--  163 (541)
T ss_pred             ecCCeEEEEEecCCCCCcce-eeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--
Confidence            998864332    3333333 2233444444999999999999999999999999888888999999999 8888886  


Q ss_pred             CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCC-----CCeEEeee
Q 022303          254 GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQF-----LHMLFFLC  295 (299)
Q Consensus       254 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~s~s  295 (299)
                      ++|++||+++++.+.+|.+|..  +|++++|--+     |.+++++.
T Consensus       164 ~~ik~~~~~~kevv~~ftgh~s--~v~t~~f~~~~~g~~G~~vLssa  208 (541)
T KOG4547|consen  164 RQIKVLDIETKEVVITFTGHGS--PVRTLSFTTLIDGIIGKYVLSSA  208 (541)
T ss_pred             ceEEEEEccCceEEEEecCCCc--ceEEEEEEEeccccccceeeecc
Confidence            6899999999999999999999  9999999877     77777653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=1.8e-12  Score=111.90  Aligned_cols=231  Identities=13%  Similarity=0.069  Sum_probs=144.0

Q ss_pred             cchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeec
Q 022303           21 RATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEE  100 (299)
Q Consensus        21 ~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~  100 (299)
                      ...|.+|+.+-.. ...+..|.+.+...+|+|+++.|+...               ..+....+|+.++..+..      
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s---------------~~~~~~~i~i~dl~tg~~------  240 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVS---------------FENKKSQLVVHDLRSGAR------  240 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEE---------------ecCCCcEEEEEeCCCCce------
Confidence            3667777765433 344567888899999999999988510               011111233323221111      


Q ss_pred             CceeeEEeeccccCeeEEEe-cCC-EEEEE-eCCCcEEEE--ecCCceeEEEecCCC-ceeEEEEecCCCEEE-EE-cCC
Q 022303          101 GRIDIDQWKAHSVGVDQCRM-KRG-LILTG-VGDKVMRLW--SLEGYKCVEEYSLPN-AASLVDFDFDESKIV-GL-IGT  172 (299)
Q Consensus       101 g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~-~~dg~i~iw--d~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~-~d~  172 (299)
                        ..+..+.+|.   ..+.| |++ .|+.+ +.+|.+.||  |+.+++... +..+. ......|+||++.|+ ++ .++
T Consensus       241 --~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~wSpDG~~i~f~s~~~g  314 (429)
T PRK01742        241 --KVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-LTSGAGNNTEPSWSPDGQSILFTSDRSG  314 (429)
T ss_pred             --EEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe-eccCCCCcCCEEECCCCCEEEEEECCCC
Confidence              0122233443   34677 676 66655 568876655  666665443 33333 344599999999877 44 467


Q ss_pred             eEEEEecCC--ceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEE
Q 022303          173 RICIWRRNG--LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIIS  249 (299)
Q Consensus       173 ~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~  249 (299)
                      ...+|++..  .........+   ....++|++..++..+.++ +.+||+.+++........  ....+.|+|+ ++|+.
T Consensus       315 ~~~I~~~~~~~~~~~~l~~~~---~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~  388 (429)
T PRK01742        315 SPQVYRMSASGGGASLVGGRG---YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIY  388 (429)
T ss_pred             CceEEEEECCCCCeEEecCCC---CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEE
Confidence            777777643  3222112222   2347899999988777654 566999887654332222  2356789999 89999


Q ss_pred             EeCCCcEEEEeC--CCCceEEEeeccCCCCcEEEEEccCC
Q 022303          250 GSSLGSIAISGL--SSDQRVATLRSTDCTGHIICLMYPQF  287 (299)
Q Consensus       250 ~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~i~~~~~s~~  287 (299)
                      ++.++...+|++  .+|+..+.+..+.+  .+...+|+|-
T Consensus       389 ~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~  426 (429)
T PRK01742        389 SSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY  426 (429)
T ss_pred             EEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence            999998888875  35888888887766  7888999984

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.41  E-value=1.9e-10  Score=98.46  Aligned_cols=186  Identities=21%  Similarity=0.291  Sum_probs=143.0

Q ss_pred             EeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCce-eEEEecCCC--ceeEEEE-ecCCC-EEE-EEc-CCeEEEE
Q 022303          107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK-CVEEYSLPN--AASLVDF-DFDES-KIV-GLI-GTRICIW  177 (299)
Q Consensus       107 ~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~--~~~~~~~-~~~~~-~l~-~~~-d~~i~v~  177 (299)
                      .+..|...|.++.+ +.+ .++.++.|+.+.+|+..... ....+....  ....+.+ .+++. .++ .+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            34689999999999 444 78888899999999998886 666666533  3333555 77777 444 344 8999999


Q ss_pred             ecCC-c--eeeeeccCCccceeeeeccCCCeEEEecC-CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-C-eEEEEe
Q 022303          178 RRNG-L--RSVFPSREGTFMKGLCMRYFDPEAVVGCE-DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGS  251 (299)
Q Consensus       178 d~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~  251 (299)
                      +... .  ...+..+...+. .+++.+.+..+++++. ++.+++|+...+..+..+..|...|.+++++|+ . .+++++
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  218 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVT-SLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS  218 (466)
T ss_pred             EecCCCeEEEEEecCcccEE-EEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence            9986 2  244455554444 5688888888888875 999999999988888888889999999999988 6 555559


Q ss_pred             CCCcEEEEeCCCCceEE-EeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          252 SLGSIAISGLSSDQRVA-TLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       252 ~dg~i~iwd~~~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      .|+.|++||...++.+. .+..|..  .. -..|+|++.++++++.
T Consensus       219 ~d~~i~~wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~  261 (466)
T COG2319         219 SDGTIRLWDLSTGKLLRSTLSGHSD--SV-VSSFSPDGSLLASGSS  261 (466)
T ss_pred             CCCcEEEEECCCCcEEeeecCCCCc--ce-eEeECCCCCEEEEecC
Confidence            99999999998888887 6777776  43 2389999988776654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.41  E-value=4.8e-13  Score=109.01  Aligned_cols=177  Identities=13%  Similarity=0.086  Sum_probs=149.5

Q ss_pred             EEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCce-eeeeccCCcc
Q 022303          117 QCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR-SVFPSREGTF  193 (299)
Q Consensus       117 ~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~-~~~~~~~~~~  193 (299)
                      .+.+ .++ +|+.|+.-|.|..+|..++++...+...+.+..+.|-.+..+++......++|||-.+-+ ..+..+.. +
T Consensus       134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~-v  212 (545)
T KOG1272|consen  134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIR-V  212 (545)
T ss_pred             eeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCc-h
Confidence            4555 455 999999999999999999999999988887777999888888888999999999987664 22333222 1


Q ss_pred             ceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeec
Q 022303          194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRS  272 (299)
Q Consensus       194 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~  272 (299)
                      . .+.|-|..-.|++++..|.++.-|+.+|+.+..+....+.+..+.-+|- ..+-+|...|+|.+|.....+++..+..
T Consensus       213 ~-rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc  291 (545)
T KOG1272|consen  213 A-RLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC  291 (545)
T ss_pred             h-hhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh
Confidence            1 2344454555889999999999999999999999888889999999997 7899999999999999999999999999


Q ss_pred             cCCCCcEEEEEccCCCCeEEeeecc
Q 022303          273 TDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       273 ~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      |.+  +|.++++.++|+|++++++-
T Consensus       292 H~g--~V~siAv~~~G~YMaTtG~D  314 (545)
T KOG1272|consen  292 HRG--PVSSIAVDRGGRYMATTGLD  314 (545)
T ss_pred             cCC--CcceEEECCCCcEEeecccc
Confidence            998  99999999999999998864

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.41  E-value=1.3e-10  Score=97.13  Aligned_cols=180  Identities=11%  Similarity=0.100  Sum_probs=117.4

Q ss_pred             CeeEEEe-cCC-EEEEEe-CCCcEEEEecCC-c---eeEEEecCCCceeEEEEecCCCEEE--EEcCCeEEEEecCCcee
Q 022303          114 GVDQCRM-KRG-LILTGV-GDKVMRLWSLEG-Y---KCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRS  184 (299)
Q Consensus       114 ~i~~~~~-~~~-~l~s~~-~dg~i~iwd~~~-~---~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~  184 (299)
                      ....+.+ +++ ++++++ .++.|.+|++++ +   +.+..+.....+..++++|++++++  ...++.|.+||+.+...
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~  160 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH  160 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence            3455777 566 666655 489999999874 2   2333343434455688999999886  44568999999976321


Q ss_pred             e-------eeccCCccceeeeeccCCCeEEEecC-CCcEEEEEcCC--cc--eeeecccc------CCceeEEEeCCC-C
Q 022303          185 V-------FPSREGTFMKGLCMRYFDPEAVVGCE-DGTARVFDMYS--RK--CSQIIRMH------CAPVTSLSLSED-Q  245 (299)
Q Consensus       185 ~-------~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~--~~--~~~~~~~~------~~~i~~~~~~~~-~  245 (299)
                      .       .....+.....+.+++++++++++.. ++.|.+||+..  ++  .+..+...      ......+.++|+ +
T Consensus       161 l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~  240 (330)
T PRK11028        161 LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR  240 (330)
T ss_pred             ccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence            1       11122222334688999999877765 89999999973  22  23333211      122346889999 8


Q ss_pred             eEEEEeC-CCcEEEEeCCCCc----eEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          246 LIISGSS-LGSIAISGLSSDQ----RVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       246 ~l~~~~~-dg~i~iwd~~~~~----~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +++++.. ++.|.+|++....    .+...... .  ....+.|+|+|++|++++.
T Consensus       241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~--~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-T--QPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             EEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-c--cCCceEECCCCCEEEEEEc
Confidence            8887754 7899999986533    22333222 1  4568999999999998763

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.40  E-value=5.2e-11  Score=92.96  Aligned_cols=152  Identities=14%  Similarity=0.235  Sum_probs=117.3

Q ss_pred             ccccCeeEEEecCCEEEEEeCCCcEEEEecC-CceeEEEecC---CCceeEEEEecCCCEEE--EEcCCeEEEEecCCce
Q 022303          110 AHSVGVDQCRMKRGLILTGVGDKVMRLWSLE-GYKCVEEYSL---PNAASLVDFDFDESKIV--GLIGTRICIWRRNGLR  183 (299)
Q Consensus       110 ~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~---~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~  183 (299)
                      ....+|.++.+..+.++..- ...|+||... +.+.++.++.   +.+..+++-..+...|+  |-.-|.|++-|+....
T Consensus        92 ~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~  170 (346)
T KOG2111|consen   92 SFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTK  170 (346)
T ss_pred             EeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcC
Confidence            45678888888666555554 4789999987 5666666653   33323343344445566  7778999999997543


Q ss_pred             ----eeeeccCCccceeeeeccCCCeEEEecCCCc-EEEEEcCCcceeeecc--ccCCceeEEEeCCC-CeEEEEeCCCc
Q 022303          184 ----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGT-ARVFDMYSRKCSQIIR--MHCAPVTSLSLSED-QLIISGSSLGS  255 (299)
Q Consensus       184 ----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~dg~  255 (299)
                          ..+..|.+.+. +++++.+|..+|+++..|+ |+|||..+|+.+++++  .....|.+|+|+|+ .+|+++|..|+
T Consensus       171 ~~~p~~I~AH~s~Ia-cv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT  249 (346)
T KOG2111|consen  171 PNAPSIINAHDSDIA-CVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT  249 (346)
T ss_pred             cCCceEEEcccCcee-EEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe
Confidence                46677777665 6789999999999999998 7899999999999997  34567999999999 99999999999


Q ss_pred             EEEEeCCC
Q 022303          256 IAISGLSS  263 (299)
Q Consensus       256 i~iwd~~~  263 (299)
                      |+|+.++.
T Consensus       250 lHiF~l~~  257 (346)
T KOG2111|consen  250 LHIFSLRD  257 (346)
T ss_pred             EEEEEeec
Confidence            99999875

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.40  E-value=1.5e-11  Score=104.83  Aligned_cols=218  Identities=11%  Similarity=0.092  Sum_probs=151.6

Q ss_pred             CCCCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhh
Q 022303           10 SPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEEL   89 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~   89 (299)
                      .+.++-++++.+...-+|++.. .-++.| .|.+.|.|+.|+|-...+++ +.+                ...-+|    
T Consensus        63 ~dGkrFASG~aDK~VI~W~~kl-EG~LkY-SH~D~IQCMsFNP~~h~Las-CsL----------------sdFglW----  119 (1081)
T KOG1538|consen   63 KDGKRFASGSADKSVIIWTSKL-EGILKY-SHNDAIQCMSFNPITHQLAS-CSL----------------SDFGLW----  119 (1081)
T ss_pred             cCCceeccCCCceeEEEecccc-cceeee-ccCCeeeEeecCchHHHhhh-cch----------------hhcccc----
Confidence            4667778888888888888654 233333 78899999999998888887 111                011222    


Q ss_pred             hhccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecC---C-CceeEEEEecCC
Q 022303           90 AMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSL---P-NAASLVDFDFDE  163 (299)
Q Consensus        90 ~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~---~-~~~~~~~~~~~~  163 (299)
                        ++..+.+..        ......|.+++| .|+ +|+.|-.||+|.+-+- ++++...++.   + +++..++|+|..
T Consensus       120 --S~~qK~V~K--------~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~s  188 (1081)
T KOG1538|consen  120 --SPEQKSVSK--------HKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSS  188 (1081)
T ss_pred             --ChhhhhHHh--------hhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCC
Confidence              222222210        122346778899 566 9999999999999864 4555555543   3 455569998854


Q ss_pred             -----CEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCcee
Q 022303          164 -----SKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVT  237 (299)
Q Consensus       164 -----~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~  237 (299)
                           ..++ ...+.++.+|.+.+...-....-+-...++...+++.+++.|+.|+.+++|-. .|-.+.+.......|+
T Consensus       189 g~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIW  267 (1081)
T KOG1538|consen  189 GEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIW  267 (1081)
T ss_pred             CCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccceeEE
Confidence                 2455 77788999998876532111111112224567788999999999999999964 4777777766788999


Q ss_pred             EEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022303          238 SLSLSED-QLIISGSSLGSIAISGLS  262 (299)
Q Consensus       238 ~~~~~~~-~~l~~~~~dg~i~iwd~~  262 (299)
                      .++..|+ +.++.|+.||+|..|++-
T Consensus       268 tV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  268 TVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             EEEEccCCceEEEEEccCeeehhhhH
Confidence            9999999 999999999999999874

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=1.1e-10  Score=100.89  Aligned_cols=186  Identities=11%  Similarity=-0.018  Sum_probs=120.3

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCC---CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCC--eEE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGT--RIC  175 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~--~i~  175 (299)
                      .+.+..|...+....| |++ .|+..+.+   ..|.+||+.+++...............|+|+++.++  .+.++  .|+
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy  275 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIY  275 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence            3445567777888888 666 77766643   469999998887644333333333589999999876  34455  699


Q ss_pred             EEecCCceee-eeccCCccceeeeeccCCCeEEEec-CCCc--EEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEE
Q 022303          176 IWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGC-EDGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG  250 (299)
Q Consensus       176 v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~  250 (299)
                      +||+.++... +..+.. .....+|++++..++..+ .++.  |.++|+.+++... +..+.......+|+|+ +.++..
T Consensus       276 ~~d~~~g~~~~lt~~~~-~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~  353 (433)
T PRK04922        276 VMDLGSRQLTRLTNHFG-IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMV  353 (433)
T ss_pred             EEECCCCCeEECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEE
Confidence            9999876522 222222 222358999999877655 3444  6667777665433 2223334557899999 777766


Q ss_pred             eCCC---cEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          251 SSLG---SIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       251 ~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +.++   .|.+||+.+++.. .+... .  ......|+|||++++..+.
T Consensus       354 ~~~~~~~~I~v~d~~~g~~~-~Lt~~-~--~~~~p~~spdG~~i~~~s~  398 (433)
T PRK04922        354 HGSGGQYRIAVMDLSTGSVR-TLTPG-S--LDESPSFAPNGSMVLYATR  398 (433)
T ss_pred             ECCCCceeEEEEECCCCCeE-ECCCC-C--CCCCceECCCCCEEEEEEe
Confidence            5433   5999999877654 33322 2  3456789999998876553

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=2.5e-10  Score=98.43  Aligned_cols=186  Identities=11%  Similarity=-0.020  Sum_probs=118.5

Q ss_pred             EEeeccccCeeEEEe-cCC-EEEEEe---CCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-E-EcCC--eEEE
Q 022303          106 DQWKAHSVGVDQCRM-KRG-LILTGV---GDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGT--RICI  176 (299)
Q Consensus       106 ~~~~~h~~~i~~~~~-~~~-~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~d~--~i~v  176 (299)
                      +.+..+...+....| |++ .|+..+   .+..|.+|++.+++...............|+||++.|+ . ..++  .|++
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~  271 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV  271 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence            334456667888888 777 665543   24579999999886544333333344589999999988 3 3344  6999


Q ss_pred             EecCCceeeeeccCCccceeeeeccCCCeEEEecC-CCc--EEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC
Q 022303          177 WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-DGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS  252 (299)
Q Consensus       177 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~  252 (299)
                      ||+.++................|+|++..++..+. ++.  |.++|+.+++.. .+...........|+|| ++++..+.
T Consensus       272 ~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~  350 (429)
T PRK03629        272 MDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSS  350 (429)
T ss_pred             EECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEc
Confidence            99987642221111112224589999998766554 344  455566665443 33333444567889998 77776654


Q ss_pred             C---CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          253 L---GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       253 d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +   ..|.+||+.+++. ..+....   ......|+|||++|+.++.
T Consensus       351 ~~g~~~I~~~dl~~g~~-~~Lt~~~---~~~~p~~SpDG~~i~~~s~  393 (429)
T PRK03629        351 NGGQQHIAKQDLATGGV-QVLTDTF---LDETPSIAPNGTMVIYSSS  393 (429)
T ss_pred             cCCCceEEEEECCCCCe-EEeCCCC---CCCCceECCCCCEEEEEEc
Confidence            3   3588899988764 3343221   3456789999999988764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.38  E-value=9.7e-11  Score=89.55  Aligned_cols=134  Identities=13%  Similarity=0.165  Sum_probs=94.6

Q ss_pred             cEEEEecC-CceeEEEecC--CCceeEEEEecCCCEEE---EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeE
Q 022303          133 VMRLWSLE-GYKCVEEYSL--PNAASLVDFDFDESKIV---GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA  206 (299)
Q Consensus       133 ~i~iwd~~-~~~~~~~~~~--~~~~~~~~~~~~~~~l~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l  206 (299)
                      ...+|.++ ....+..+..  ...+..++|+|+++.++   +..+..|.+||++.. .+......... .+.|+|.+.++
T Consensus        38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~-~i~~~~~~~~n-~i~wsP~G~~l  115 (194)
T PF08662_consen   38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK-KIFSFGTQPRN-TISWSPDGRFL  115 (194)
T ss_pred             eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCccc-EeEeecCCCce-EEEECCCCCEE
Confidence            34555542 2233444443  33466699999999876   335679999999743 33333333333 46999999998


Q ss_pred             EEecC---CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC------CCcEEEEeCCCCceEEEee
Q 022303          207 VVGCE---DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS------LGSIAISGLSSDQRVATLR  271 (299)
Q Consensus       207 ~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~------dg~i~iwd~~~~~~~~~~~  271 (299)
                      +.++.   .|.|.+||.++.+.+.... |. .++.++|+|+ ++++++..      |+.++||+. +|+.+....
T Consensus       116 ~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~  187 (194)
T PF08662_consen  116 VLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKKP  187 (194)
T ss_pred             EEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEecc
Confidence            88764   4679999999888887773 33 3789999999 99888874      788999998 477776554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=2.9e-10  Score=98.54  Aligned_cols=185  Identities=14%  Similarity=-0.011  Sum_probs=121.9

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeC---CCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCC--eEE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVG---DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGT--RIC  175 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~--~i~  175 (299)
                      .+.+..|...+....| |++ .|+..+.   +..|.+||+.+++...............|+||++.|+  .+.++  .|+
T Consensus       194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  273 (435)
T PRK05137        194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY  273 (435)
T ss_pred             cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence            4556678888999999 676 6666553   4689999999887644333333444589999999876  34444  588


Q ss_pred             EEecCCceee-eeccCCccceeeeeccCCCeEEEecC-C--CcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEE
Q 022303          176 IWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCE-D--GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG  250 (299)
Q Consensus       176 v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~-d--~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~  250 (299)
                      +||+.++... +....+ .....+|++++..++..+. +  ..|.++|+..++.. .+..+...+....|+|+ +.|+..
T Consensus       274 ~~d~~~~~~~~Lt~~~~-~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~  351 (435)
T PRK05137        274 TMDLRSGTTTRLTDSPA-IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFT  351 (435)
T ss_pred             EEECCCCceEEccCCCC-ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEE
Confidence            8898876422 222222 2223589999998776553 3  35888888765543 33333455677889999 777776


Q ss_pred             eCC---CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          251 SSL---GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       251 ~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      +.+   ..|.+||+..+. ...+... .  .+....|+|||++|+..+
T Consensus       352 ~~~~~~~~i~~~d~~~~~-~~~lt~~-~--~~~~p~~spDG~~i~~~~  395 (435)
T PRK05137        352 KQGGGQFSIGVMKPDGSG-ERILTSG-F--LVEGPTWAPNGRVIMFFR  395 (435)
T ss_pred             EcCCCceEEEEEECCCCc-eEeccCC-C--CCCCCeECCCCCEEEEEE
Confidence            543   368888986543 3344322 2  467789999999887644

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=6.5e-11  Score=94.02  Aligned_cols=179  Identities=10%  Similarity=0.126  Sum_probs=125.9

Q ss_pred             CeeEEEecCC--EEEEEeCCCcEEEEecCCceeEEEec--CCCceeEEEEecCCCE-EEEEcCCeEEEEecCCce-----
Q 022303          114 GVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYS--LPNAASLVDFDFDESK-IVGLIGTRICIWRRNGLR-----  183 (299)
Q Consensus       114 ~i~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~-l~~~~d~~i~v~d~~~~~-----  183 (299)
                      .+..++|+..  .++++..|-+|++||-+. ++...++  .+.++.+++|-|.+.. ++.+-.+.|.+|......     
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~  178 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN  178 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc
Confidence            4555667444  788999999999999775 5544554  3456777999997654 555555678899765321     


Q ss_pred             ---------eeeeccCCccceeeeeccCCCeEEEecC-CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC
Q 022303          184 ---------SVFPSREGTFMKGLCMRYFDPEAVVGCE-DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS  252 (299)
Q Consensus       184 ---------~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~  252 (299)
                               .++..........+.|++++..+++++. |..|.|||+.++..+.......+.++-+.|+|| .+|++++-
T Consensus       179 ~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~  258 (445)
T KOG2139|consen  179 IRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC  258 (445)
T ss_pred             cccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc
Confidence                     1222222222335788999888888764 677999999998876655444566899999999 99999999


Q ss_pred             CCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          253 LGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       253 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      |+..++|...+...-.......+  .|+..+|+|+|++|+-++
T Consensus       259 davfrlw~e~q~wt~erw~lgsg--rvqtacWspcGsfLLf~~  299 (445)
T KOG2139|consen  259 DAVFRLWQENQSWTKERWILGSG--RVQTACWSPCGSFLLFAC  299 (445)
T ss_pred             cceeeeehhcccceecceeccCC--ceeeeeecCCCCEEEEEE
Confidence            99999996544332222323333  799999999999877554

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.37  E-value=2.2e-11  Score=97.36  Aligned_cols=160  Identities=13%  Similarity=0.124  Sum_probs=123.3

Q ss_pred             EEEEEeCC--CcEEEEecCCceeEEEecC----------CCceeEEEEecC--CCEEE-EEcCCeEEEEecCCcee---e
Q 022303          124 LILTGVGD--KVMRLWSLEGYKCVEEYSL----------PNAASLVDFDFD--ESKIV-GLIGTRICIWRRNGLRS---V  185 (299)
Q Consensus       124 ~l~s~~~d--g~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~~~--~~~l~-~~~d~~i~v~d~~~~~~---~  185 (299)
                      .+++|+..  ..+++||++..+.+.+-+.          +-....+.|-+.  ...++ ++.-+.+++||.+.++.   .
T Consensus       163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~  242 (412)
T KOG3881|consen  163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ  242 (412)
T ss_pred             eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence            67779999  8999999998865544332          111223677666  66777 99999999999987653   3


Q ss_pred             eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeee-ccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 022303          186 FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS  263 (299)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~  263 (299)
                      +...+.... .+...|.++.+++|..-+.+..||.+.++.+.. +.+..+.|.++..+|. .++++++-|..|||+|+.+
T Consensus       243 fd~~E~~is-~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  243 FDFLENPIS-STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             eccccCcce-eeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            333344433 568889999999999999999999999988776 7788999999999999 9999999999999999999


Q ss_pred             CceEEEeeccCCCCcEEEEEccCC
Q 022303          264 DQRVATLRSTDCTGHIICLMYPQF  287 (299)
Q Consensus       264 ~~~~~~~~~~~~~~~i~~~~~s~~  287 (299)
                      .+++...-...   .++++-+.++
T Consensus       322 rkll~kvYvKs---~lt~il~~~~  342 (412)
T KOG3881|consen  322 RKLLHKVYVKS---RLTFILLRDD  342 (412)
T ss_pred             chhhhhhhhhc---cccEEEecCC
Confidence            77665554333   4666666543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=1.5e-10  Score=101.39  Aligned_cols=187  Identities=13%  Similarity=0.149  Sum_probs=127.4

Q ss_pred             eEEeeccccCeeEEEe---cC--CEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-----------------------
Q 022303          105 IDQWKAHSVGVDQCRM---KR--GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-----------------------  156 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~---~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------------  156 (299)
                      ++.+.+|..++..+.+   +.  .++++++.||.|++||...++++.++..+.++..                       
T Consensus        50 i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~  129 (792)
T KOG1963|consen   50 ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSI  129 (792)
T ss_pred             hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeeccccee
Confidence            4566899999999877   23  2888999999999999999888777754322222                       


Q ss_pred             ------------------------------------EEEecCCCEEEEEcCCeEEEEecCCceeeeec---cCCc--cce
Q 022303          157 ------------------------------------VDFDFDESKIVGLIGTRICIWRRNGLRSVFPS---REGT--FMK  195 (299)
Q Consensus       157 ------------------------------------~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~---~~~~--~~~  195 (299)
                                                          +..++.+.......+..+.+|+..........   ...+  ...
T Consensus       130 ~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t  209 (792)
T KOG1963|consen  130 LTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNIT  209 (792)
T ss_pred             eeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccce
Confidence                                                11122222222223334455555442211110   0111  124


Q ss_pred             eeeeccCCCeEEEecCCCcEEEEEcCC----cceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEe
Q 022303          196 GLCMRYFDPEAVVGCEDGTARVFDMYS----RKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATL  270 (299)
Q Consensus       196 ~~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~  270 (299)
                      +.+++|.+.++++|..||+|.+|.--.    ......+.-|...|++++|+++ .+|.+|+..|.+.+|.+.+++  +++
T Consensus       210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqf  287 (792)
T KOG1963|consen  210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQF  287 (792)
T ss_pred             eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--ccc
Confidence            578999999999999999999996432    1223455568889999999999 999999999999999999988  344


Q ss_pred             eccCCCCcEEEEEccCCCCeEEee
Q 022303          271 RSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       271 ~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      -+.-+. +|..+.+|||+.+.+..
T Consensus       288 LPRLgs-~I~~i~vS~ds~~~sl~  310 (792)
T KOG1963|consen  288 LPRLGS-PILHIVVSPDSDLYSLV  310 (792)
T ss_pred             ccccCC-eeEEEEEcCCCCeEEEE
Confidence            333332 99999999999876543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=3.3e-10  Score=97.82  Aligned_cols=185  Identities=11%  Similarity=0.062  Sum_probs=116.5

Q ss_pred             EEeeccccCeeEEEe-cCC-EEEEEeCC---CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCCeEEEE-
Q 022303          106 DQWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIW-  177 (299)
Q Consensus       106 ~~~~~h~~~i~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~-  177 (299)
                      +.+..+...+.+..| |++ .|+..+.+   ..|.+||+.+++.......+.......|+||++.|+  .+.++...+| 
T Consensus       189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~  268 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT  268 (427)
T ss_pred             eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence            344567778888888 676 66665543   359999999887654333343444689999999887  4556655554 


Q ss_pred             -ecCCce-eeeeccCCccceeeeeccCCCeEEEec-CCCcEEEEEc--CCcceeeeccccCCceeEEEeCCC-CeEEEEe
Q 022303          178 -RRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDM--YSRKCSQIIRMHCAPVTSLSLSED-QLIISGS  251 (299)
Q Consensus       178 -d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~--~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~  251 (299)
                       |+.+.. ..+..+.+. .....|++++..++..+ .++...+|.+  ..++... +..........+|+|+ ++++..+
T Consensus       269 ~d~~~~~~~~lt~~~~~-~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~s  346 (427)
T PRK02889        269 VNADGSGLRRLTQSSGI-DTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKLLAYIS  346 (427)
T ss_pred             EECCCCCcEECCCCCCC-CcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCEEEEEE
Confidence             554443 222222222 22357999999876544 3455566654  4444322 2222233456789999 8888776


Q ss_pred             CCC---cEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          252 SLG---SIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       252 ~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      .++   .|.+||+.+++.. .+... .  ......|+|||++|+.++.
T Consensus       347 ~~~g~~~I~v~d~~~g~~~-~lt~~-~--~~~~p~~spdg~~l~~~~~  390 (427)
T PRK02889        347 RVGGAFKLYVQDLATGQVT-ALTDT-T--RDESPSFAPNGRYILYATQ  390 (427)
T ss_pred             ccCCcEEEEEEECCCCCeE-EccCC-C--CccCceECCCCCEEEEEEe
Confidence            554   5999999887643 33322 2  3467899999999887763

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.33  E-value=9.5e-13  Score=114.39  Aligned_cols=179  Identities=17%  Similarity=0.274  Sum_probs=131.3

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecC
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRN  180 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~  180 (299)
                      ++.+.+|..+|+|+.| ..+ ++++|+.|..++||.++++.++...++|+..+. ++.+.+...++ ++.|..|++|.+.
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            4455799999999999 344 999999999999999999999999999998887 99988888888 9999999999999


Q ss_pred             Cce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceee--------------ecc--------------
Q 022303          181 GLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ--------------IIR--------------  230 (299)
Q Consensus       181 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--------------~~~--------------  230 (299)
                      .+.  .++.+|++.+. .++++|..    +.+.||++++||.+-...+.              .+.              
T Consensus       263 ~~~pvsvLrghtgavt-aiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d  337 (1113)
T KOG0644|consen  263 DGAPVSVLRGHTGAVT-AIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD  337 (1113)
T ss_pred             CCchHHHHhcccccee-eeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence            875  66778888766 34666644    77889999999987110000              000              


Q ss_pred             --ccCCceeEEEeCCC------------CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCe
Q 022303          231 --MHCAPVTSLSLSED------------QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHM  290 (299)
Q Consensus       231 --~~~~~i~~~~~~~~------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  290 (299)
                        ........+++...            .+.+++-.+-.+.+|++.+|.+++.+.+|..  .+..+.++|-+..
T Consensus       338 ~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvLd~Hpfn~r  409 (1113)
T KOG0644|consen  338 GEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVLDVHPFNPR  409 (1113)
T ss_pred             cccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc--ceeeeeecCCCcH
Confidence              00011112222222            2333333455688899999999999999988  8899999885443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.33  E-value=6.1e-10  Score=93.56  Aligned_cols=170  Identities=13%  Similarity=0.073  Sum_probs=119.7

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeecc
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY  201 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  201 (299)
                      ++++-..++.|.+.|..+.+.+..+........ +.++||+++++ ++.||.|.++|+.+.+.+.....+.....+++++
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~   87 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP   87 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence            445667789999999999999999987655443 88999999988 8899999999999998666666666566789999


Q ss_pred             CCCeEEEe-cCCCcEEEEEcCCcceeeecccc-------CCceeEEEeCCC-C-eEEEEeCCCcEEEEeCCCCceE--EE
Q 022303          202 FDPEAVVG-CEDGTARVFDMYSRKCSQIIRMH-------CAPVTSLSLSED-Q-LIISGSSLGSIAISGLSSDQRV--AT  269 (299)
Q Consensus       202 ~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~--~~  269 (299)
                      ++.+++++ ..++.+.++|.++.+.++.+...       ...+..+..+|. . ++++--+.+.|.+.|....+.+  ..
T Consensus        88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~  167 (369)
T PF02239_consen   88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT  167 (369)
T ss_dssp             TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred             CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence            99997765 46899999999999988887532       345677777777 5 5555566688888898765543  33


Q ss_pred             eeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          270 LRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       270 ~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +... .  ......|+|+++|++++..
T Consensus       168 i~~g-~--~~~D~~~dpdgry~~va~~  191 (369)
T PF02239_consen  168 IKVG-R--FPHDGGFDPDGRYFLVAAN  191 (369)
T ss_dssp             EE---T--TEEEEEE-TTSSEEEEEEG
T ss_pred             eccc-c--cccccccCcccceeeeccc
Confidence            3332 2  6889999999999988754

...

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.31  E-value=6e-11  Score=91.56  Aligned_cols=181  Identities=15%  Similarity=0.175  Sum_probs=124.6

Q ss_pred             ccccCeeEEEe-cCC------EEEEEeCCCcEEEEecCCcee----EEEec------CCCceeEEEEec-CCCEEE-EEc
Q 022303          110 AHSVGVDQCRM-KRG------LILTGVGDKVMRLWSLEGYKC----VEEYS------LPNAASLVDFDF-DESKIV-GLI  170 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~------~l~s~~~dg~i~iwd~~~~~~----~~~~~------~~~~~~~~~~~~-~~~~l~-~~~  170 (299)
                      .|.-+++.+.| |+.      +|+|.+  ..+++|.+...+.    ...+.      ...+..+..|+. +.+++. ++-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            68889999988 432      466554  4899999874221    11111      122334477765 445566 788


Q ss_pred             CCeEEEEecCCce-----eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcce---eeeccccCCceeEEEe
Q 022303          171 GTRICIWRRNGLR-----SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKC---SQIIRMHCAPVTSLSL  241 (299)
Q Consensus       171 d~~i~v~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~i~~~~~  241 (299)
                      |-+..|||++++.     ..+-.|...+.. ++|...+.. +++.+.||.+++||++..+-   +.+-.....+...++|
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~D-Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYD-IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeE-EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence            9999999999862     233445554442 355554443 89999999999999997543   3333233678899999


Q ss_pred             CCC--CeEEEEeCC-CcEEEEeCCC-CceEEEeeccCCCCcEEEEEccCC-CCeEEeee
Q 022303          242 SED--QLIISGSSL-GSIAISGLSS-DQRVATLRSTDCTGHIICLMYPQF-LHMLFFLC  295 (299)
Q Consensus       242 ~~~--~~l~~~~~d-g~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~s~s  295 (299)
                      ++.  +++|+-..| ..|.|.|++. ..++.+++.|..  .|++++|.|. ...+++++
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a--~VNgIaWaPhS~~hictaG  307 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA--SVNGIAWAPHSSSHICTAG  307 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc--cccceEecCCCCceeeecC
Confidence            975  788876654 4699999987 567899999998  9999999995 45677765

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.31  E-value=6.3e-10  Score=93.02  Aligned_cols=170  Identities=11%  Similarity=0.058  Sum_probs=111.6

Q ss_pred             EEEEeCCCcEEEEecCC-ce--eEEEecCCCceeEEEEecCCCEEE-E-EcCCeEEEEecCC-cee-eee-ccCCcccee
Q 022303          125 ILTGVGDKVMRLWSLEG-YK--CVEEYSLPNAASLVDFDFDESKIV-G-LIGTRICIWRRNG-LRS-VFP-SREGTFMKG  196 (299)
Q Consensus       125 l~s~~~dg~i~iwd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~-~-~~d~~i~v~d~~~-~~~-~~~-~~~~~~~~~  196 (299)
                      +++...++.|++|++.+ ++  .+..++.......++++|++++|+ + ..++.|.+|++.. +.. ... ........-
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~   84 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH   84 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence            34457789999999964 43  556665555566699999999886 4 4578999999973 221 111 111112234


Q ss_pred             eeeccCCCeEEEec-CCCcEEEEEcCC-cc---eeeeccccCCceeEEEeCCC-CeEE-EEeCCCcEEEEeCCCCceEE-
Q 022303          197 LCMRYFDPEAVVGC-EDGTARVFDMYS-RK---CSQIIRMHCAPVTSLSLSED-QLII-SGSSLGSIAISGLSSDQRVA-  268 (299)
Q Consensus       197 ~~~~~~~~~l~s~~-~d~~i~iwd~~~-~~---~~~~~~~~~~~i~~~~~~~~-~~l~-~~~~dg~i~iwd~~~~~~~~-  268 (299)
                      ++++++++.+++++ .++.|.+|++.+ +.   .+..+ .+...+..++++|+ ++++ +...++.|.+||+.+...+. 
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            68889999877665 488999999974 22   22222 22344677889998 7665 45567999999997643221 


Q ss_pred             ----EeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          269 ----TLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       269 ----~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                          ......+. ....++|+|+|++|+++..
T Consensus       164 ~~~~~~~~~~g~-~p~~~~~~pdg~~lyv~~~  194 (330)
T PRK11028        164 QEPAEVTTVEGA-GPRHMVFHPNQQYAYCVNE  194 (330)
T ss_pred             cCCCceecCCCC-CCceEEECCCCCEEEEEec
Confidence                11111122 5688999999999988764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=5.7e-11  Score=95.91  Aligned_cols=174  Identities=20%  Similarity=0.239  Sum_probs=126.4

Q ss_pred             hhhccccceeecCcee--eEEe-----------eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCC--
Q 022303           89 LAMKHHRFALEEGRID--IDQW-----------KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP--  151 (299)
Q Consensus        89 ~~~~~~~~~l~~g~~~--~~~~-----------~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~--  151 (299)
                      ++++.++..++.|..+  ++++           ..|.+.|.++.| +|+ .|++-+.| ..+||+.+++..+......  
T Consensus       150 vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k  228 (398)
T KOG0771|consen  150 VAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSK  228 (398)
T ss_pred             EEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCccc
Confidence            4566666677776554  4444           479999999999 777 99999999 9999999999776655422  


Q ss_pred             CceeE-EEEecCC---CEE-E--EEcCCeEEEEecCCce-----eeeec-cCCccceeeeeccCCCeEEEecCCCcEEEE
Q 022303          152 NAASL-VDFDFDE---SKI-V--GLIGTRICIWRRNGLR-----SVFPS-REGTFMKGLCMRYFDPEAVVGCEDGTARVF  218 (299)
Q Consensus       152 ~~~~~-~~~~~~~---~~l-~--~~~d~~i~v~d~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  218 (299)
                      +.... +.|+.++   .+. +  ....+.|..||+....     ...+. ........++++.++++++.|+.||.|.++
T Consensus       229 ~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~  308 (398)
T KOG0771|consen  229 DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIY  308 (398)
T ss_pred             chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEE
Confidence            22333 7777666   332 2  3334567777664321     11111 112234468999999999999999999999


Q ss_pred             EcCCcceeeecc-ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 022303          219 DMYSRKCSQIIR-MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS  263 (299)
Q Consensus       219 d~~~~~~~~~~~-~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~  263 (299)
                      +..+-+.++..+ .|...|+.+.|+|+ +++++.+.|....+..+.-
T Consensus       309 ~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  309 DAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999887776665 79999999999999 9999999999998887754

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=3.5e-12  Score=104.62  Aligned_cols=258  Identities=12%  Similarity=0.103  Sum_probs=172.0

Q ss_pred             hccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhc-CCCCC---CCchhhhh--------hhhhhhcc--ccce
Q 022303           37 SSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLH-GFSNT---SGSSMRLH--------LEELAMKH--HRFA   97 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~-~~~~~---~d~~~~~~--------~~~~~~~~--~~~~   97 (299)
                      ++.+|.+.|..+.|+..|..+++     .+.+|+....+.. .+...   .....|+.        +.+-+.++  ....
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i  216 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI  216 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence            34479999999999999999998     4668888444332 11111   11111100        00111111  1133


Q ss_pred             eecCcee-eEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEec---CCCc--e--eEEEEecCCC-E
Q 022303           98 LEEGRID-IDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYS---LPNA--A--SLVDFDFDES-K  165 (299)
Q Consensus        98 l~~g~~~-~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~--~--~~~~~~~~~~-~  165 (299)
                      +.+|..+ .+.+..|.++|..++. |+.  -|.+++.|+.+.-+|+.++.+...+.   .+..  +  ..++.+|... .
T Consensus       217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~  296 (559)
T KOG1334|consen  217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE  296 (559)
T ss_pred             ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence            3444444 6677889999999988 544  89999999999999988765433332   2322  1  2377888766 4


Q ss_pred             EE-EEcCCeEEEEecCCceee--------ee-cc--CCcccee--eeeccCCCeEEEecCCCcEEEEEcCC--c------
Q 022303          166 IV-GLIGTRICIWRRNGLRSV--------FP-SR--EGTFMKG--LCMRYFDPEAVVGCEDGTARVFDMYS--R------  223 (299)
Q Consensus       166 l~-~~~d~~i~v~d~~~~~~~--------~~-~~--~~~~~~~--~~~~~~~~~l~s~~~d~~i~iwd~~~--~------  223 (299)
                      ++ ++.|..+++||.+.-...        +. .+  ......+  ++++..+..+++...|-.|+++....  |      
T Consensus       297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~  376 (559)
T KOG1334|consen  297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS  376 (559)
T ss_pred             cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence            55 889999999998753211        11 11  0111223  34454566688888888999995432  2      


Q ss_pred             ----ce-eeeccccC--CceeEEEeC-CC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          224 ----KC-SQIIRMHC--APVTSLSLS-ED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       224 ----~~-~~~~~~~~--~~i~~~~~~-~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                          .. .+.+++|.  ..|..+-|- |. .++++|+..|.|.||+-.+++.++-+++...  -|+|+.-+|--..||++
T Consensus       377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~--VVNCLEpHP~~PvLAsS  454 (559)
T KOG1334|consen  377 SPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH--VVNCLEPHPHLPVLASS  454 (559)
T ss_pred             cchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc--eEeccCCCCCCchhhcc
Confidence                11 22356664  457888876 66 9999999999999999999999999998887  89999999999999998


Q ss_pred             ec
Q 022303          295 CF  296 (299)
Q Consensus       295 s~  296 (299)
                      ++
T Consensus       455 Gi  456 (559)
T KOG1334|consen  455 GI  456 (559)
T ss_pred             CC
Confidence            75

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.30  E-value=1.2e-09  Score=94.51  Aligned_cols=186  Identities=14%  Similarity=0.054  Sum_probs=121.0

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCC---CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-E-EcCC--eEE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGT--RIC  175 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~d~--~i~  175 (299)
                      .+.+..+...+....| +++ +|+.+..+   ..|++||+.+++...............|+|+++.|+ . ..++  .|+
T Consensus       182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~  261 (417)
T TIGR02800       182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY  261 (417)
T ss_pred             CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence            3444556667777788 666 66666543   479999999886554433333444589999999877 3 3333  699


Q ss_pred             EEecCCcee-eeeccCCccceeeeeccCCCeEEEecC-CC--cEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEE
Q 022303          176 IWRRNGLRS-VFPSREGTFMKGLCMRYFDPEAVVGCE-DG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG  250 (299)
Q Consensus       176 v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~  250 (299)
                      +||+.++.. .+..+... .....|++++..++..+. ++  .|.++|+.+++.. .+..+...+..+.|+|+ ++++.+
T Consensus       262 ~~d~~~~~~~~l~~~~~~-~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~  339 (417)
T TIGR02800       262 VMDLDGKQLTRLTNGPGI-DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFV  339 (417)
T ss_pred             EEECCCCCEEECCCCCCC-CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEE
Confidence            999887642 22222221 112478888888765543 33  5778888766543 33334556778899998 888887


Q ss_pred             eCCC---cEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          251 SSLG---SIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       251 ~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +.++   .|.+||+.++.. ..+....   ......|+|+|++|+..+.
T Consensus       340 ~~~~~~~~i~~~d~~~~~~-~~l~~~~---~~~~p~~spdg~~l~~~~~  384 (417)
T TIGR02800       340 HREGGGFNIAVMDLDGGGE-RVLTDTG---LDESPSFAPNGRMILYATT  384 (417)
T ss_pred             EccCCceEEEEEeCCCCCe-EEccCCC---CCCCceECCCCCEEEEEEe
Confidence            7765   789999987653 3332222   3345689999999887764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=2.2e-11  Score=102.03  Aligned_cols=169  Identities=13%  Similarity=0.148  Sum_probs=123.3

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceee--ee------ccCC--
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSV--FP------SREG--  191 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~--~~------~~~~--  191 (299)
                      -|+.++....|+-++++.|..+..+....+.+. +.+++-..+|+ |+.+|.|-+||.+....+  +.      .+.+  
T Consensus       147 Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~  226 (703)
T KOG2321|consen  147 DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGD  226 (703)
T ss_pred             cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcccc
Confidence            355555556777789999999988887755554 88999888888 888999999999876411  11      1111  


Q ss_pred             ccceeeeeccCC--CeEEEecCCCcEEEEEcCCcceeeecc-ccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCce
Q 022303          192 TFMKGLCMRYFD--PEAVVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQR  266 (299)
Q Consensus       192 ~~~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~  266 (299)
                      ....+.++.+.+  =.+++|..+|.+.|||+++.+++..-. ...-+|..+.|.+.  +--+.......++|||-.+|+.
T Consensus       227 ~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~  306 (703)
T KOG2321|consen  227 AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP  306 (703)
T ss_pred             ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCc
Confidence            112234444444  448999999999999999988765442 45678999999764  3233334456789999999999


Q ss_pred             EEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          267 VATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       267 ~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ...+....   .++.+|+-|++-+++++-
T Consensus       307 ~asiEpt~---~lND~C~~p~sGm~f~An  332 (703)
T KOG2321|consen  307 MASIEPTS---DLNDFCFVPGSGMFFTAN  332 (703)
T ss_pred             eeeccccC---CcCceeeecCCceEEEec
Confidence            98887766   689999999988887764

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=1.8e-10  Score=99.37  Aligned_cols=166  Identities=10%  Similarity=0.004  Sum_probs=108.7

Q ss_pred             eeEEEe-cCC-EEE-EEeCCC--cEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcC-C--eEEEEecCCcee-
Q 022303          115 VDQCRM-KRG-LIL-TGVGDK--VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG-T--RICIWRRNGLRS-  184 (299)
Q Consensus       115 i~~~~~-~~~-~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d-~--~i~v~d~~~~~~-  184 (299)
                      +....| |++ .|+ +.+.+|  .|.+||+.+++.......+.......|+|+++.|+ .+.+ +  .|+++|+.++.. 
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~  324 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ  324 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE
Confidence            345677 676 555 445555  58899999887665544444455699999999887 5543 3  566667766532 


Q ss_pred             eeeccCCccceeeeeccCCCeEEEecC-C--CcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCc---EE
Q 022303          185 VFPSREGTFMKGLCMRYFDPEAVVGCE-D--GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS---IA  257 (299)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~l~s~~~-d--~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~---i~  257 (299)
                      .+... +......+++|++..++..+. +  ..|.+||+.+++.. .+.. ........|+|| ++|+.++.++.   +.
T Consensus       325 ~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~  401 (429)
T PRK03629        325 RITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLN  401 (429)
T ss_pred             EeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEE
Confidence            22222 222224578999999766543 2  35888999877643 3322 122346789999 88888887764   67


Q ss_pred             EEeCCCCceEEEeeccCCCCcEEEEEccC
Q 022303          258 ISGLSSDQRVATLRSTDCTGHIICLMYPQ  286 (299)
Q Consensus       258 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  286 (299)
                      ++++ +|+....+..+.+  .+...+|+|
T Consensus       402 ~~~~-~G~~~~~l~~~~~--~~~~p~Wsp  427 (429)
T PRK03629        402 LVST-DGRFKARLPATDG--QVKFPAWSP  427 (429)
T ss_pred             EEEC-CCCCeEECccCCC--CcCCcccCC
Confidence            7887 5766777777666  788889987

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.27  E-value=8.8e-11  Score=92.23  Aligned_cols=197  Identities=11%  Similarity=0.069  Sum_probs=135.4

Q ss_pred             hhccccceeecCcee------eEEeecc-----ccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCC-Cce
Q 022303           90 AMKHHRFALEEGRID------IDQWKAH-----SVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAA  154 (299)
Q Consensus        90 ~~~~~~~~l~~g~~~------~~~~~~h-----~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~  154 (299)
                      .++|+++.++.-...      ..+++-|     -+.|.-+.| .+.  .|.....|+.|.+|++...+....++.. .+.
T Consensus        15 ~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agl   94 (447)
T KOG4497|consen   15 SFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGL   94 (447)
T ss_pred             eECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcc
Confidence            467777777655443      1122222     255666778 344  6667788999999999988887777754 444


Q ss_pred             eEEEEecCCCEEE--EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCC---cEEEEEcCCcceeeec
Q 022303          155 SLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDG---TARVFDMYSRKCSQII  229 (299)
Q Consensus       155 ~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~  229 (299)
                      ...+|+|+|+.+.  ...+-.|.+|.+.+.....-.+..+.....++++++++.+..+.-.   .+.+........+.++
T Consensus        95 s~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f  174 (447)
T KOG4497|consen   95 SSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEF  174 (447)
T ss_pred             eeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhc
Confidence            5599999998877  6668899999999987666555555557789999999966554321   2333333445566667


Q ss_pred             cccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          230 RMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       230 ~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ....-..+.+.|+||        +..+.+||---...+..++...   .+..++|+|.+++|+.|+..
T Consensus       175 ~~dT~DltgieWsPd--------g~~laVwd~~Leykv~aYe~~l---G~k~v~wsP~~qflavGsyD  231 (447)
T KOG4497|consen  175 KLDTIDLTGIEWSPD--------GNWLAVWDNVLEYKVYAYERGL---GLKFVEWSPCNQFLAVGSYD  231 (447)
T ss_pred             CCCcccccCceECCC--------CcEEEEecchhhheeeeeeecc---ceeEEEeccccceEEeeccc
Confidence            666667889999998        3345567754333333333322   68999999999999999864

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.24  E-value=3.4e-11  Score=100.49  Aligned_cols=153  Identities=14%  Similarity=0.184  Sum_probs=111.9

Q ss_pred             eEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeec--cC-CC-eEEEecCCCcEEE
Q 022303          144 CVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMR--YF-DP-EAVVGCEDGTARV  217 (299)
Q Consensus       144 ~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~-~~-~l~s~~~d~~i~i  217 (299)
                      ....+.+|.+.+. ++|+.+|.+|+ |+.|-.+.|||.-..+.......++...+++..  |. ++ .+++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            3456778888876 99999999999 999999999999866655555555555554443  33 22 2889999999999


Q ss_pred             EEcCC----------cceeeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCc-------eE---EEeeccCC
Q 022303          218 FDMYS----------RKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQ-------RV---ATLRSTDC  275 (299)
Q Consensus       218 wd~~~----------~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-------~~---~~~~~~~~  275 (299)
                      +|+..          .+....+..|...|..++..|+  ..+.++++||+|+-+|++...       +.   ..+...--
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            99984          2234455578899999999987  789999999999999998632       11   11111112


Q ss_pred             CCcEEEEEccCCC-CeEEeeeccc
Q 022303          276 TGHIICLMYPQFL-HMLFFLCFLP  298 (299)
Q Consensus       276 ~~~i~~~~~s~~g-~~l~s~s~~~  298 (299)
                        ...++..+|.. .+|++|+.-|
T Consensus       202 --elk~ltisp~rp~~laVGgsdp  223 (758)
T KOG1310|consen  202 --ELKCLTISPSRPYYLAVGGSDP  223 (758)
T ss_pred             --eeeeeeecCCCCceEEecCCCc
Confidence              56888999954 5777887655

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.22  E-value=6.6e-10  Score=99.15  Aligned_cols=173  Identities=12%  Similarity=0.079  Sum_probs=139.9

Q ss_pred             cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-----EEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCc
Q 022303          121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-----VDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGT  192 (299)
Q Consensus       121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~  192 (299)
                      .+..++.+..+..+-+||...+.....++..+....     +.++++.-+++ ++.-+.|.+|+.....  .....|++.
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~  177 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS  177 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence            455899999999999999998888877776654432     34466666777 8899999999987332  235667766


Q ss_pred             cceeeeeccCCCeEEEecCCCcEEEEEcCCcceee-eccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEee
Q 022303          193 FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ-IIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLR  271 (299)
Q Consensus       193 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  271 (299)
                      .. .+.++-++.++++.++|..+++|++++.+... ..-+|...|..+.+.|+ .+++++.|.+.++|+. +++.+..+.
T Consensus       178 iF-~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~-~~~~l~~y~  254 (967)
T KOG0974|consen  178 IF-SIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGV-NGTQLEVYD  254 (967)
T ss_pred             eE-EEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEec-ccceehhhh
Confidence            44 23566689999999999999999999988766 44489999999999999 8999999999999986 477777888


Q ss_pred             ccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          272 STDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       272 ~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      .|... .|+.++.+++...+++++..
T Consensus       255 ~h~g~-~iw~~~~~~~~~~~vT~g~D  279 (967)
T KOG0974|consen  255 EHSGK-GIWKIAVPIGVIIKVTGGND  279 (967)
T ss_pred             hhhhc-ceeEEEEcCCceEEEeeccC
Confidence            88776 89999999998888888754

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=2.8e-09  Score=84.95  Aligned_cols=181  Identities=13%  Similarity=0.088  Sum_probs=116.2

Q ss_pred             cccCeeEEEe-cCC--EEEEEeCCCcEEEEecCC-c---e----------eEEEecCCCceeEEEEecCCCEEE--EEcC
Q 022303          111 HSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEG-Y---K----------CVEEYSLPNAASLVDFDFDESKIV--GLIG  171 (299)
Q Consensus       111 h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~-~---~----------~~~~~~~~~~~~~~~~~~~~~~l~--~~~d  171 (299)
                      .+..|+|++| |..  .|+.|.. +-|.+|.... +   .          .+....+|..+.++.|.+|+..++  +..|
T Consensus       139 sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gs  217 (445)
T KOG2139|consen  139 SQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGS  217 (445)
T ss_pred             hhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCc
Confidence            4567999999 544  6777766 4578897642 1   1          122334667777899999999998  4457


Q ss_pred             CeEEEEecCCceeeeec-cCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-Ce-EE
Q 022303          172 TRICIWRRNGLRSVFPS-REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QL-II  248 (299)
Q Consensus       172 ~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~-l~  248 (299)
                      ..|.+||..++..+--. ........+.|+|++.+++++..|+..++|+.....-........+.|....|+|. ++ |+
T Consensus       218 ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf  297 (445)
T KOG2139|consen  218 SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLF  297 (445)
T ss_pred             ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEE
Confidence            79999999988643222 22222335799999999999999999999965533222222234558999999998 54 44


Q ss_pred             EEeCCCcEEEEeCCC-Cc--------------eEEEee---ccCC----CCcEEEEEccCCCCeEEee
Q 022303          249 SGSSLGSIAISGLSS-DQ--------------RVATLR---STDC----TGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       249 ~~~~dg~i~iwd~~~-~~--------------~~~~~~---~~~~----~~~i~~~~~s~~g~~l~s~  294 (299)
                      +.+..-  ++|.+.- ++              ++..+.   ...+    .+++.+++|+|.|.|||+.
T Consensus       298 ~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~  363 (445)
T KOG2139|consen  298 ACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVI  363 (445)
T ss_pred             EEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEE
Confidence            444333  3443321 00              000010   0001    1378999999999999873

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=1.3e-08  Score=88.30  Aligned_cols=186  Identities=10%  Similarity=-0.026  Sum_probs=115.9

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCC---CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-E-EcCC--eEE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGT--RIC  175 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~d~--~i~  175 (299)
                      .+.+..+...+....| |++ .|+..+.+   ..|.+||+.+++...............|+|+++.|+ . ..++  .|+
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy  270 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY  270 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence            3444566777888888 676 66655533   368999999887654333333333589999999887 3 3344  688


Q ss_pred             EEecCCceee-eeccCCccceeeeeccCCCeEEEec-CCC--cEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEE
Q 022303          176 IWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGC-EDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG  250 (299)
Q Consensus       176 v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~  250 (299)
                      ++|+.++... +..... ......|++++..++..+ .++  .|.++|+.+++..... ..........|+|+ +.++..
T Consensus       271 ~~d~~~~~~~~lt~~~~-~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i~~~  348 (430)
T PRK00178        271 VMDLASRQLSRVTNHPA-IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTLVMV  348 (430)
T ss_pred             EEECCCCCeEEcccCCC-CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEEE
Confidence            8999876522 222222 122347899998865544 333  5777788777643322 12223445789999 777666


Q ss_pred             eC-CC--cEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          251 SS-LG--SIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       251 ~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +. ++  .|.++|+.+++. ..+... .  ......|+|||++++..+.
T Consensus       349 ~~~~~~~~l~~~dl~tg~~-~~lt~~-~--~~~~p~~spdg~~i~~~~~  393 (430)
T PRK00178        349 HRQDGNFHVAAQDLQRGSV-RILTDT-S--LDESPSVAPNGTMLIYATR  393 (430)
T ss_pred             EccCCceEEEEEECCCCCE-EEccCC-C--CCCCceECCCCCEEEEEEe
Confidence            54 33  588899988764 333222 1  2234589999999887653

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=8.2e-09  Score=89.53  Aligned_cols=159  Identities=13%  Similarity=0.039  Sum_probs=106.5

Q ss_pred             CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEc---CCeEEEEecCCcee-eeeccCCccceeeeeccCCCeE
Q 022303          132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI---GTRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPEA  206 (299)
Q Consensus       132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~---d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~l  206 (299)
                      ..|.++|...............+....|+||++.|+ .+.   +..|++||+.++.. .+....+... ..+|+|++..+
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~l  260 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKV  260 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEE
Confidence            378888876544433333444566699999999988 543   45899999987753 3333333322 45899999886


Q ss_pred             E-EecCCCc--EEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC-CC--cEEEEeCCCCceEEEeeccCCCCcE
Q 022303          207 V-VGCEDGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LG--SIAISGLSSDQRVATLRSTDCTGHI  279 (299)
Q Consensus       207 ~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~i  279 (299)
                      + +.+.++.  |.+||+.+++. ..+..+........|+|| +.|+..+. +|  .|+++|+..++. +.+.....  .+
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~--~~  336 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGG--RY  336 (435)
T ss_pred             EEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCC--cc
Confidence            4 5555554  77779887765 345455556678899999 77776663 33  688889876543 44443333  56


Q ss_pred             EEEEccCCCCeEEeee
Q 022303          280 ICLMYPQFLHMLFFLC  295 (299)
Q Consensus       280 ~~~~~s~~g~~l~s~s  295 (299)
                      ....|+|+|++|+..+
T Consensus       337 ~~~~~SpdG~~ia~~~  352 (435)
T PRK05137        337 STPVWSPRGDLIAFTK  352 (435)
T ss_pred             cCeEECCCCCEEEEEE
Confidence            7789999999998765

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.18  E-value=1.3e-10  Score=96.64  Aligned_cols=89  Identities=17%  Similarity=0.142  Sum_probs=76.4

Q ss_pred             ceeEEEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeec
Q 022303          153 AASLVDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII  229 (299)
Q Consensus       153 ~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  229 (299)
                      .+...+|+||+++|+ .+.||.++|||..+.+  .+++..-+... ++||+|+++++++|++|..|.||.+...+.+..-
T Consensus       292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLL-CvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG  370 (636)
T KOG2394|consen  292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLL-CVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG  370 (636)
T ss_pred             cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceE-EEEEcCCccEEEecCCcceEEEEEeccceEEEec
Confidence            344499999999999 9999999999998875  23333334433 6799999999999999999999999999999988


Q ss_pred             cccCCceeEEEeC
Q 022303          230 RMHCAPVTSLSLS  242 (299)
Q Consensus       230 ~~~~~~i~~~~~~  242 (299)
                      ++|+..|+.++|+
T Consensus       371 qGHkSWVs~VaFD  383 (636)
T KOG2394|consen  371 QGHKSWVSVVAFD  383 (636)
T ss_pred             cccccceeeEeec
Confidence            8999999999998

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=4.9e-09  Score=90.79  Aligned_cols=159  Identities=14%  Similarity=0.022  Sum_probs=104.2

Q ss_pred             CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEc---CCeEEEEecCCcee-eeeccCCccceeeeeccCCCeE
Q 022303          132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI---GTRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPEA  206 (299)
Q Consensus       132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~---d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~l  206 (299)
                      ..|.+||...............+....|+|+++.|+ .+.   +..|++||+.++.. .+....+. .....|++++..+
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~-~~~~~~SpDG~~l  262 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGI-NGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCC-ccCceECCCCCEE
Confidence            368899986444433333444555699999999988 553   34799999987653 23323332 2245899999886


Q ss_pred             E-EecCCC--cEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC-CCc--EEEEeCCCCceEEEeeccCCCCcE
Q 022303          207 V-VGCEDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LGS--IAISGLSSDQRVATLRSTDCTGHI  279 (299)
Q Consensus       207 ~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~i  279 (299)
                      + +.+.++  .|.+||+.+++.. .+..+.......+|+|| +.|+.++. +|.  |+++|+.+++. ..+.....  ..
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~--~~  338 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGN--YN  338 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCC--Cc
Confidence            4 444444  5999999887654 44445555577899999 77776654 444  67777766653 33332222  45


Q ss_pred             EEEEccCCCCeEEeee
Q 022303          280 ICLMYPQFLHMLFFLC  295 (299)
Q Consensus       280 ~~~~~s~~g~~l~s~s  295 (299)
                      ...+|+|||++++..+
T Consensus       339 ~~~~~SpDG~~Ia~~~  354 (433)
T PRK04922        339 ARASVSPDGKKIAMVH  354 (433)
T ss_pred             cCEEECCCCCEEEEEE
Confidence            5789999999988654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=4.6e-09  Score=92.35  Aligned_cols=186  Identities=13%  Similarity=0.163  Sum_probs=137.7

Q ss_pred             eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCC--c--eeEEEecCC-CceeEEEEecCCCEEE-EEcCCeEEEEecC
Q 022303          109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG--Y--KCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRN  180 (299)
Q Consensus       109 ~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~--~--~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~  180 (299)
                      ..|+-.+++.++ +++ ++++|..||.|.+|.--.  +  .....+..| ..+..+.|+++|.+|+ |+.++.+.+|.+.
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            356777888888 566 999999999999997432  1  123345544 5566699999999999 9999999999999


Q ss_pred             CceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc-----------cCCceeEEEeCCC-CeEE
Q 022303          181 GLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-----------HCAPVTSLSLSED-QLII  248 (299)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----------~~~~i~~~~~~~~-~~l~  248 (299)
                      ++...+-..-+....-+.+++++...+....|+.|.+....+-+...++.+           ..+-.+.+.++|. +.++
T Consensus       282 T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v  361 (792)
T KOG1963|consen  282 TGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV  361 (792)
T ss_pred             CCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence            887555444444443457889999988888899999998765544433321           2345677889997 8899


Q ss_pred             EEeCCCcEEEEeCCCCceEEEeeccC-----C----CCcEEEEEccCCCCeEEee
Q 022303          249 SGSSLGSIAISGLSSDQRVATLRSTD-----C----TGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       249 ~~~~dg~i~iwd~~~~~~~~~~~~~~-----~----~~~i~~~~~s~~g~~l~s~  294 (299)
                      -.+..|.|++||+-+.+.+..+..-.     +    .-.++.++.+..|.++++.
T Consensus       362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~  416 (792)
T KOG1963|consen  362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATL  416 (792)
T ss_pred             ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEe
Confidence            99999999999998877666553211     1    0157888888889998875

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=2.5e-10  Score=93.98  Aligned_cols=187  Identities=12%  Similarity=0.077  Sum_probs=133.6

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEec-CCCc-eeEEEEecC--CCEEE-EEcCCeEEEE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS-LPNA-ASLVDFDFD--ESKIV-GLIGTRICIW  177 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~-~~~~~~~~~--~~~l~-~~~d~~i~v~  177 (299)
                      .+.|..|.+.|+.+.| ..+ .|++|+.|..|.+||...++....+. +|.. +....|-|.  .+.++ ++.||.+++=
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            3455899999999999 444 99999999999999999988887776 4433 333456553  34566 8999999987


Q ss_pred             ecCCce-----eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeecc---ccCC---ceeEEEeCCC-
Q 022303          178 RRNGLR-----SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIR---MHCA---PVTSLSLSED-  244 (299)
Q Consensus       178 d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~---~i~~~~~~~~-  244 (299)
                      .+....     .....|.+++. .+++.|..++ |.+++.|+.+.-+|++.......+.   .+..   ...+++.+|. 
T Consensus       215 ~i~~t~~~e~t~rl~~h~g~vh-klav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n  293 (559)
T KOG1334|consen  215 EILETGYVENTKRLAPHEGPVH-KLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN  293 (559)
T ss_pred             eeccccceecceecccccCccc-eeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence            765332     33455666655 4588888887 9999999999999998765433332   2222   4678888886 


Q ss_pred             -CeEEEEeCCCcEEEEeCCCCc------eEEEeeccC----CCCcEEEEEccCCCCeEE
Q 022303          245 -QLIISGSSLGSIAISGLSSDQ------RVATLRSTD----CTGHIICLMYPQFLHMLF  292 (299)
Q Consensus       245 -~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~----~~~~i~~~~~s~~g~~l~  292 (299)
                       ..+++|+.|-.+++||.+.-.      .+..+..++    ....|++++++.++.-|.
T Consensus       294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL  352 (559)
T KOG1334|consen  294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELL  352 (559)
T ss_pred             ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcccee
Confidence             689999999999999987532      233333322    112799999997654433

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.14  E-value=1.2e-09  Score=85.98  Aligned_cols=183  Identities=16%  Similarity=0.089  Sum_probs=114.4

Q ss_pred             eccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCC------------
Q 022303          109 KAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGT------------  172 (299)
Q Consensus       109 ~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~------------  172 (299)
                      ..-.+.+..+.| |++  .|.+...|-.|.+|.+.+.+....-.......-++|+|++++.+ .+.-.            
T Consensus        88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~  167 (447)
T KOG4497|consen   88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA  167 (447)
T ss_pred             ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence            455677888888 676  78888899999999999877654333333444488889888876 44422            


Q ss_pred             ------------------------eEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeee
Q 022303          173 ------------------------RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI  228 (299)
Q Consensus       173 ------------------------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  228 (299)
                                              .+.+||.--.-.++.-+.+-....+.|+|.++.++.|+.|+.+++.+--+.+...+
T Consensus       168 W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~e  247 (447)
T KOG4497|consen  168 WILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGE  247 (447)
T ss_pred             HHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhh
Confidence                                    12222221111111111222223468999999999999999988765322110000


Q ss_pred             ------------------------------------------------------------cc------ccCCceeEEEeC
Q 022303          229 ------------------------------------------------------------IR------MHCAPVTSLSLS  242 (299)
Q Consensus       229 ------------------------------------------------------------~~------~~~~~i~~~~~~  242 (299)
                                                                                  ++      .....+.-++|+
T Consensus       248 flhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs  327 (447)
T KOG4497|consen  248 FLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS  327 (447)
T ss_pred             hccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec
Confidence                                                                        00      011235568999


Q ss_pred             CC-CeEEEEeC--CCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          243 ED-QLIISGSS--LGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       243 ~~-~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      +| .+++|-.+  -+.+-+||++..+....+... .  +|....|+|....|+.+
T Consensus       328 ~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk-~--piraf~WdP~~prL~vc  379 (447)
T KOG4497|consen  328 CDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQK-H--PIRAFEWDPGRPRLVVC  379 (447)
T ss_pred             CCceEEeeecCCCCceEEEEechhhhhhhhhhhc-c--ceeEEEeCCCCceEEEE
Confidence            99 66666543  356899999877655444333 3  89999999988777654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=6.3e-09  Score=89.91  Aligned_cols=158  Identities=12%  Similarity=0.041  Sum_probs=98.3

Q ss_pred             CcEEEEecCCceeEEEe-cCCCceeEEEEecCCCEEE-EEcC---CeEEEEecCCcee-eeeccCCccceeeeeccCCCe
Q 022303          132 KVMRLWSLEGYKCVEEY-SLPNAASLVDFDFDESKIV-GLIG---TRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPE  205 (299)
Q Consensus       132 g~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~~~d---~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~  205 (299)
                      ..|.++|.. +.....+ .....+...+|+||++.|+ .+.+   ..|++||+.+++. .+....+.. ....|+|++..
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~-~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSN-SAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCc-cceEECCCCCE
Confidence            467777764 4433333 3344455699999999988 5432   3699999987753 232233332 24589999998


Q ss_pred             EE-EecCCCcEEEEE--cCCcceeeeccccCCceeEEEeCCC-CeEEEEeC-CCcEEEEeC--CCCceEEEeeccCCCCc
Q 022303          206 AV-VGCEDGTARVFD--MYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LGSIAISGL--SSDQRVATLRSTDCTGH  278 (299)
Q Consensus       206 l~-s~~~d~~i~iwd--~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg~i~iwd~--~~~~~~~~~~~~~~~~~  278 (299)
                      ++ +.+.++...+|.  +..+. ...+..+........|+|| +.|+..+. +|...+|.+  .+++. ..+.....  .
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~--~  329 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGS--Y  329 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCC--C
Confidence            65 567777766665  44443 4445445555677889999 76665554 466666654  44432 33322222  3


Q ss_pred             EEEEEccCCCCeEEeee
Q 022303          279 IICLMYPQFLHMLFFLC  295 (299)
Q Consensus       279 i~~~~~s~~g~~l~s~s  295 (299)
                      ....+|+|||++|+..+
T Consensus       330 ~~~~~~SpDG~~Ia~~s  346 (427)
T PRK02889        330 NTSPRISPDGKLLAYIS  346 (427)
T ss_pred             cCceEECCCCCEEEEEE
Confidence            45678999999998665

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=3.3e-08  Score=85.83  Aligned_cols=183  Identities=12%  Similarity=-0.001  Sum_probs=109.5

Q ss_pred             eeccccCeeEEEe-cCC-EEEEEeC-CC--cEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCC--eEEEEe
Q 022303          108 WKAHSVGVDQCRM-KRG-LILTGVG-DK--VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGT--RICIWR  178 (299)
Q Consensus       108 ~~~h~~~i~~~~~-~~~-~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~--~i~v~d  178 (299)
                      +..+...+....| |++ .|+..+. ++  .|.+||+.+++...............|+||++.|+  ...++  .|+++|
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d  292 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD  292 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence            3445556777788 676 5655443 33  58888998877543322333333589999999887  44555  488888


Q ss_pred             cCCceee-eeccCCccceeeeeccCCCeEEEec-CCC--cEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC-
Q 022303          179 RNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGC-EDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-  252 (299)
Q Consensus       179 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-  252 (299)
                      +.++... +..... .....+|++++..++..+ .++  .|.++|+.+++..... .........+|+|| ++|+..+. 
T Consensus       293 l~tg~~~~lt~~~~-~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~~~~~~  370 (448)
T PRK04792        293 IATKALTRITRHRA-IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMIMVNRT  370 (448)
T ss_pred             CCCCCeEECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEEEEEec
Confidence            8776422 222221 222357899998865544 333  4666788776653321 12222345689999 77666554 


Q ss_pred             CC--cEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          253 LG--SIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       253 dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ++  .|.++|+.+++. ..+....   ......|+|||++|+..+.
T Consensus       371 ~g~~~I~~~dl~~g~~-~~lt~~~---~d~~ps~spdG~~I~~~~~  412 (448)
T PRK04792        371 NGKFNIARQDLETGAM-QVLTSTR---LDESPSVAPNGTMVIYSTT  412 (448)
T ss_pred             CCceEEEEEECCCCCe-EEccCCC---CCCCceECCCCCEEEEEEe
Confidence            44  456678877764 3332221   2234579999998877553

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.11  E-value=3.3e-09  Score=82.27  Aligned_cols=176  Identities=12%  Similarity=0.039  Sum_probs=120.0

Q ss_pred             EEec-CC-EEEEEeCCCcEEEEecCCcee--EEEecCCCceeE-EEEecCCC-EEE-EEcCCeEEEEecCCce-eeee--
Q 022303          118 CRMK-RG-LILTGVGDKVMRLWSLEGYKC--VEEYSLPNAASL-VDFDFDES-KIV-GLIGTRICIWRRNGLR-SVFP--  187 (299)
Q Consensus       118 ~~~~-~~-~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~-~~~~~~~~-~l~-~~~d~~i~v~d~~~~~-~~~~--  187 (299)
                      +.|. .+ .++++..+|.+.+-+......  +++++.|+...- ..|+.... ++. |+.|+.+..||++-+. .++.  
T Consensus       127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~  206 (339)
T KOG0280|consen  127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS  206 (339)
T ss_pred             EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc
Confidence            4553 33 788888999998655544433  347777775554 77766544 455 9999999999999543 3333  


Q ss_pred             -ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCC-cceeeeccccCCceeEEEeCCC---CeEEEEeCCCcEEEEeCC
Q 022303          188 -SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS-RKCSQIIRMHCAPVTSLSLSED---QLIISGSSLGSIAISGLS  262 (299)
Q Consensus       188 -~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~---~~l~~~~~dg~i~iwd~~  262 (299)
                       .|...+..+.+-.+.+.++++|+.|..|++||.++ ++++..-. -.+.|+.+..+|.   .+|+++..+| .+|-+.+
T Consensus       207 kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~  284 (339)
T KOG0280|consen  207 KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSS  284 (339)
T ss_pred             eeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEec
Confidence             34444444555556666899999999999999994 66665543 3477999999997   3466666666 6777766


Q ss_pred             CC--c---eEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          263 SD--Q---RVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       263 ~~--~---~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      .+  +   .+...+.|..  -...-.|......|++||+|
T Consensus       285 ~~~~e~~~~~~s~~~hdS--l~YG~DWd~~~~~lATCsFY  322 (339)
T KOG0280|consen  285 DKVLEFQIVLPSDKIHDS--LCYGGDWDSKDSFLATCSFY  322 (339)
T ss_pred             ccccchheeeeccccccc--eeeccccccccceeeeeecc
Confidence            53  3   3344455555  56666776666789999876

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.10  E-value=1.5e-08  Score=78.62  Aligned_cols=173  Identities=13%  Similarity=0.063  Sum_probs=118.7

Q ss_pred             ccCeeEEEe----cCC--EEEEEeCCCcEEEEecCCceeEEEecCC------C-ceeEEEEecCCCEEE-EEcCCeEEEE
Q 022303          112 SVGVDQCRM----KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLP------N-AASLVDFDFDESKIV-GLIGTRICIW  177 (299)
Q Consensus       112 ~~~i~~~~~----~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~-~~~~~~~~~~~~~l~-~~~d~~i~v~  177 (299)
                      ++.+..+.|    .++  .++-+..+|.|.++..........++.-      . ...++.|++.+..++ +-.+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            345555655    233  6778888999999987654444444321      1 244588899888888 7778888855


Q ss_pred             ecCCce----eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcC-Ccceeee-ccccCCceeEEEeCCC--CeEE
Q 022303          178 RRNGLR----SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMY-SRKCSQI-IRMHCAPVTSLSLSED--QLII  248 (299)
Q Consensus       178 d~~~~~----~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~-~~~~~~~-~~~~~~~i~~~~~~~~--~~l~  248 (299)
                      +.....    ..++.|+-. .+...++...+. +++|++|+.+..||++ .++.+.. .+.|...|.+|.-+|.  .+++
T Consensus       149 ~~t~~~le~vq~wk~He~E-~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~  227 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVHEFE-AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIA  227 (339)
T ss_pred             ecceeeeeeccccccccee-eeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEE
Confidence            444332    233444433 223455555555 7899999999999999 4444443 4578888999998865  7999


Q ss_pred             EEeCCCcEEEEeCCC-CceEEEeeccCCCCcEEEEEccCCC
Q 022303          249 SGSSLGSIAISGLSS-DQRVATLRSTDCTGHIICLMYPQFL  288 (299)
Q Consensus       249 ~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~g  288 (299)
                      +|+.|..|++||.|+ ++++..-... +  .|+.+.++|.-
T Consensus       228 TGsYDe~i~~~DtRnm~kPl~~~~v~-G--GVWRi~~~p~~  265 (339)
T KOG0280|consen  228 TGSYDECIRVLDTRNMGKPLFKAKVG-G--GVWRIKHHPEI  265 (339)
T ss_pred             EeccccceeeeehhcccCccccCccc-c--ceEEEEecchh
Confidence            999999999999994 6666544333 2  79999999853

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.06  E-value=2.1e-10  Score=96.17  Aligned_cols=217  Identities=11%  Similarity=0.082  Sum_probs=144.3

Q ss_pred             HhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccC
Q 022303           35 IFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVG  114 (299)
Q Consensus        35 i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~  114 (299)
                      ++.|.+|+..|+.++.-.+.+..++                ...|.++|+|  ++.-..++   ........+|+.|+.+
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiS----------------ASkDKTVKLW--Sik~EgD~---~~tsaCQfTY~aHkk~  786 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFIS----------------ASKDKTVKLW--SIKPEGDE---IGTSACQFTYQAHKKP  786 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceee----------------ccCCceEEEE--EeccccCc---cccceeeeEhhhccCc
Confidence            4467788888888776666555554                3488999999  44433333   1223346788999999


Q ss_pred             eeEEEecCCEEEEEeCCCcEEEEecCCceeEEEec---CCCceeE-EEEec-CCCEEE--EEcCCeEEEEecCCceee--
Q 022303          115 VDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYS---LPNAASL-VDFDF-DESKIV--GLIGTRICIWRRNGLRSV--  185 (299)
Q Consensus       115 i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~-~~~~~-~~~~l~--~~~d~~i~v~d~~~~~~~--  185 (299)
                      |..+.|-.+.-..++.||.|.+||.--+.++..+.   .+..... .+.-. +...++  ++...+|+++|.+....+  
T Consensus       787 i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E  866 (1034)
T KOG4190|consen  787 IHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE  866 (1034)
T ss_pred             ccceeeeeccceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceee
Confidence            99999843333334568999999988777665443   1222222 23322 333443  578899999999876521  


Q ss_pred             eec----cCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEE-Ee
Q 022303          186 FPS----REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAI-SG  260 (299)
Q Consensus       186 ~~~----~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i-wd  260 (299)
                      ++.    ..+....++++.+.++.++++-.+|.|.+.|.++|+.+..++.-......++--.|+.++....|.++.+ |-
T Consensus       867 ~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWh  946 (1034)
T KOG4190|consen  867 LKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWH  946 (1034)
T ss_pred             EEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeeh
Confidence            111    1123445678899999999999999999999999999888865444444454323377888888888888 87


Q ss_pred             CCCCceEEEeec
Q 022303          261 LSSDQRVATLRS  272 (299)
Q Consensus       261 ~~~~~~~~~~~~  272 (299)
                      .-.+....+.+.
T Consensus       947 aldgimh~q~kp  958 (1034)
T KOG4190|consen  947 ALDGIMHLQDKP  958 (1034)
T ss_pred             hcCCeeeeccCC
Confidence            766655444443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.06  E-value=1.8e-08  Score=84.98  Aligned_cols=187  Identities=12%  Similarity=0.062  Sum_probs=128.4

Q ss_pred             ccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCcee
Q 022303          110 AHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRS  184 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~  184 (299)
                      +|...-+.+.. +|+  .+++|..--.|++||+....+...-.....++. .-.+.|-..++ -..|..|-+..--+.-.
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            56667777877 677  688888999999999987655433333344444 33344444444 55666665543322211


Q ss_pred             eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 022303          185 VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS  263 (299)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~  263 (299)
                      ....+.-  ..-++.+..+-.|+.++....|+-+++..|..+..+....+.++++..++- .+|++|+.+|.|..||.++
T Consensus       129 ~~RIP~~--GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~  206 (703)
T KOG2321|consen  129 RTRIPKF--GRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD  206 (703)
T ss_pred             eeecCcC--CccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence            1111111  111344444444777777778999999999999999888889999999998 8999999999999999998


Q ss_pred             CceEEEeeccCC---------CCcEEEEEccCCCCeEEeeeccc
Q 022303          264 DQRVATLRSTDC---------TGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       264 ~~~~~~~~~~~~---------~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      ...+.++.....         ...|++++|+-+|-.+++|+.-|
T Consensus       207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G  250 (703)
T KOG2321|consen  207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG  250 (703)
T ss_pred             hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC
Confidence            776666643321         12599999999999999987544

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.05  E-value=1.9e-08  Score=91.72  Aligned_cols=215  Identities=16%  Similarity=0.160  Sum_probs=138.4

Q ss_pred             HhhccCccchhhHHHhhhhH-HHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCcee--eEEeecc
Q 022303           35 IFSSLGFFDLVRCSAVCKSW-NAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRID--IDQWKAH  111 (299)
Q Consensus        35 i~~~~~h~~~v~~~~~~~~~-~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~--~~~~~~h  111 (299)
                      +..+..|...|..+++++.. .++++                ...|+++|+|..       ++....+...  ..+|.--
T Consensus      1041 VAhL~Ehs~~v~k~a~s~~~~s~Fvs----------------gS~DGtVKvW~~-------~k~~~~~~s~rS~ltys~~ 1097 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVS----------------GSDDGTVKVWNL-------RKLEGEGGSARSELTYSPE 1097 (1431)
T ss_pred             eehhhhccccccceeecCCCCceEEE----------------ecCCceEEEeee-------hhhhcCcceeeeeEEEecc
Confidence            44455666666665555544 55555                448899999932       2222221111  3344445


Q ss_pred             ccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCc--e-----eEEEec--CCCceeE-EEEec-CCC-EEE-EEcCCeEEE
Q 022303          112 SVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY--K-----CVEEYS--LPNAASL-VDFDF-DES-KIV-GLIGTRICI  176 (299)
Q Consensus       112 ~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~--~-----~~~~~~--~~~~~~~-~~~~~-~~~-~l~-~~~d~~i~v  176 (299)
                      ..++.++.+ .++ ++|.++.||.|++.+++-.  +     ......  ..+.++. -++.. ... .++ ++.-+.|..
T Consensus      1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~ 1177 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVS 1177 (1431)
T ss_pred             CCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEE
Confidence            677888877 444 9999999999999998752  1     111112  2233344 23322 223 455 888899999


Q ss_pred             EecCCceee----eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc-ccCCceeEEEeCCC----CeE
Q 022303          177 WRRNGLRSV----FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLSED----QLI  247 (299)
Q Consensus       177 ~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~----~~l  247 (299)
                      ||++.....    .....|.+. .+++++.+..+++|...|.+.+||++=+.++..+. .+..+|..+..+|-    ...
T Consensus      1178 ~D~r~~~~~w~lk~~~~hG~vT-Si~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~ 1256 (1431)
T KOG1240|consen 1178 WDTRMRHDAWRLKNQLRHGLVT-SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVS 1256 (1431)
T ss_pred             ecchhhhhHHhhhcCcccccee-EEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceE
Confidence            999876422    222233333 46899999999999999999999999888877765 45578888888853    344


Q ss_pred             EE-Ee-CCCcEEEEeCCCCceEEEeecc
Q 022303          248 IS-GS-SLGSIAISGLSSDQRVATLRST  273 (299)
Q Consensus       248 ~~-~~-~dg~i~iwd~~~~~~~~~~~~~  273 (299)
                      ++ ++ ..+.|.+|++.+|.+-..+...
T Consensus      1257 vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1257 VSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred             EEecccCCCceeeeecccCcceEEEEcC
Confidence            44 44 5788999999998766666443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.04  E-value=6.4e-08  Score=83.71  Aligned_cols=160  Identities=13%  Similarity=-0.007  Sum_probs=104.2

Q ss_pred             CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcC---CeEEEEecCCce-eeeeccCCccceeeeeccCCCeE
Q 022303          132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG---TRICIWRRNGLR-SVFPSREGTFMKGLCMRYFDPEA  206 (299)
Q Consensus       132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d---~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l  206 (299)
                      ..|.++|....................|+|+++.|+ +..+   ..|++||+.++. .......+... ..+|++++..+
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l  248 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKL  248 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEE
Confidence            367788876444433333333455689999999988 5443   489999998764 33333333322 35899999886


Q ss_pred             E-EecCCC--cEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC-CC--cEEEEeCCCCceEEEeeccCCCCcE
Q 022303          207 V-VGCEDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LG--SIAISGLSSDQRVATLRSTDCTGHI  279 (299)
Q Consensus       207 ~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~i  279 (299)
                      + +.+.++  .|.+||+.++... .+..+........|+|+ +.|+..+. ++  .|+++|+.+++. ..+..+..  .+
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~--~~  324 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGG--YN  324 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCC--Cc
Confidence            5 444444  5888999876543 33344444557789998 77766554 33  588888876664 34443333  67


Q ss_pred             EEEEccCCCCeEEeeec
Q 022303          280 ICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       280 ~~~~~s~~g~~l~s~s~  296 (299)
                      ....|+|+|++++.++.
T Consensus       325 ~~~~~spdg~~i~~~~~  341 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHR  341 (417)
T ss_pred             cCeEECCCCCEEEEEEc
Confidence            78899999999887653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.04  E-value=9.6e-09  Score=82.90  Aligned_cols=147  Identities=14%  Similarity=0.157  Sum_probs=104.8

Q ss_pred             EEEEEeCCCcEEEEecCC----ceeEEEecCCCceeEEEEecCCCEEE-EEcCC---eEEEEecCCc-eeeeeccCCccc
Q 022303          124 LILTGVGDKVMRLWSLEG----YKCVEEYSLPNAASLVDFDFDESKIV-GLIGT---RICIWRRNGL-RSVFPSREGTFM  194 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~---~i~v~d~~~~-~~~~~~~~~~~~  194 (299)
                      +++.+..+....++++..    .++...+..+.....+.+..+...+. +-.-|   .+.+|..... ....-+|.....
T Consensus        76 llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~  155 (390)
T KOG3914|consen   76 LVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLL  155 (390)
T ss_pred             EEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhh
Confidence            777777777766777653    33455555565556666655554433 44444   4555554422 233344444444


Q ss_pred             eeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc-ccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEee
Q 022303          195 KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLR  271 (299)
Q Consensus       195 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  271 (299)
                       -++++++++.++++..|..|++-....-..+..+. +|...|..+++-++..|++||.|++|++||+.+|+++.++.
T Consensus       156 -dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  156 -DVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             -eeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence             35899999999999999999998877655666555 79999999999999889999999999999999999887664

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.03  E-value=1.8e-08  Score=87.74  Aligned_cols=159  Identities=14%  Similarity=0.114  Sum_probs=112.6

Q ss_pred             CCcEEEEecCCc-eeEEEecCCCceeEEEEecCC-CEEE-EEcCCeEEEEecCCceee--------eeccCCccceeeee
Q 022303          131 DKVMRLWSLEGY-KCVEEYSLPNAASLVDFDFDE-SKIV-GLIGTRICIWRRNGLRSV--------FPSREGTFMKGLCM  199 (299)
Q Consensus       131 dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~-~~l~-~~~d~~i~v~d~~~~~~~--------~~~~~~~~~~~~~~  199 (299)
                      ++.+.+|++... .+...+.....+.++.|+|.. .+++ |+.+|.|.+||++.....        ...|..... .+.|
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~-~vvW  299 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVT-AVVW  299 (555)
T ss_pred             CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeE-EEEE
Confidence            357999999865 677788888889999999855 5566 889999999999876431        122333322 2344


Q ss_pred             ccCCC--eEEEecCCCcEEEEEcCCcc-----------------------------------------------------
Q 022303          200 RYFDP--EAVVGCEDGTARVFDMYSRK-----------------------------------------------------  224 (299)
Q Consensus       200 ~~~~~--~l~s~~~d~~i~iwd~~~~~-----------------------------------------------------  224 (299)
                      ..+..  .+++++.||.|..|+++.-.                                                     
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g  379 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG  379 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence            44433  38999999999999875210                                                     


Q ss_pred             ----e------eeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCC-CCceEEEeeccCCCCcEEEEEccCCCCeE
Q 022303          225 ----C------SQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLS-SDQRVATLRSTDCTGHIICLMYPQFLHML  291 (299)
Q Consensus       225 ----~------~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  291 (299)
                          .      +..+..|.++|.++.++|-  ..+++++ |.+++||... ...++..+..+..  .|++++|||.-.-+
T Consensus       380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~--~v~~vaWSptrpav  456 (555)
T KOG1587|consen  380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPD--YVTDVAWSPTRPAV  456 (555)
T ss_pred             CcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccc--eeeeeEEcCcCceE
Confidence                0      1112246678888999886  5555555 9999999987 6677777777776  79999999987554


Q ss_pred             Ee
Q 022303          292 FF  293 (299)
Q Consensus       292 ~s  293 (299)
                      ++
T Consensus       457 F~  458 (555)
T KOG1587|consen  457 FA  458 (555)
T ss_pred             EE
Confidence            44

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.03  E-value=3.3e-09  Score=94.86  Aligned_cols=139  Identities=12%  Similarity=0.104  Sum_probs=107.5

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeecc
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY  201 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  201 (299)
                      ++++|+.-+.|.+|+......-..+.+|++.+ .+.++.++++++ .+.|.++++|++.+.+..-..--++...+.....
T Consensus       147 ~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~  226 (967)
T KOG0974|consen  147 YIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCF  226 (967)
T ss_pred             EEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEe
Confidence            99999999999999987322222466676554 599999999999 9999999999999886443333334443444444


Q ss_pred             CCCeEEEecCCCcEEEEEcCCcceeeeccccC-CceeEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 022303          202 FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-APVTSLSLSED-QLIISGSSLGSIAISGLSS  263 (299)
Q Consensus       202 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~  263 (299)
                      ....+++++.|-+.++|+.. ++.+..+..|. ..|..++..++ ..++|++.|+.+++||+..
T Consensus       227 ~~n~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  227 LPNRIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ccceeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            44499999999999999765 56666777664 46899999988 8899999999999999853

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.03  E-value=1.5e-09  Score=91.18  Aligned_cols=166  Identities=18%  Similarity=0.269  Sum_probs=121.9

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecC-------CceeEEEecCCCceeE-EEEecCCCEEEEEcCCeE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLE-------GYKCVEEYSLPNAASL-VDFDFDESKIVGLIGTRI  174 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~d~~i  174 (299)
                      +..|.||+..|..+.- .++ -+++++.|++|++|.++       +..|..+++.|...+. +.|-.+-+.+ ++.||.|
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i-~ScD~gi  806 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSI-ASCDGGI  806 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecccee-eeccCcc
Confidence            5677899999999855 444 89999999999999976       2347778888876665 8887666554 5678999


Q ss_pred             EEEecCCcee----eeeccCCccceeeeeccCCCe-EEEe-cCCCcEEEEEcCCcceeeecc-----ccCCceeEEEeCC
Q 022303          175 CIWRRNGLRS----VFPSREGTFMKGLCMRYFDPE-AVVG-CEDGTARVFDMYSRKCSQIIR-----MHCAPVTSLSLSE  243 (299)
Q Consensus       175 ~v~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~-l~s~-~~d~~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~~~  243 (299)
                      ++||.--+..    ......+....+.|+...... +++| +...+|+++|.+..+-..+++     +.+..+.++++.|
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~  886 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD  886 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence            9999754431    112223333445566543333 4444 678899999999887666554     3445678999988


Q ss_pred             C-CeEEEEeCCCcEEEEeCCCCceEEEee
Q 022303          244 D-QLIISGSSLGSIAISGLSSDQRVATLR  271 (299)
Q Consensus       244 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~  271 (299)
                      . +.++++-.+|+|.+.|.++|+.+..++
T Consensus       887 ~GN~lAa~LSnGci~~LDaR~G~vINswr  915 (1034)
T KOG4190|consen  887 KGNKLAAALSNGCIAILDARNGKVINSWR  915 (1034)
T ss_pred             CcchhhHHhcCCcEEEEecCCCceeccCC
Confidence            7 899999999999999999999877654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=2.5e-07  Score=77.94  Aligned_cols=240  Identities=8%  Similarity=0.050  Sum_probs=152.7

Q ss_pred             cchhccCcHHHHHHHhhccC-ccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceee
Q 022303           21 RATIESLNGDIICMIFSSLG-FFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALE   99 (299)
Q Consensus        21 ~~~~~~~~~~~~~~i~~~~~-h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~   99 (299)
                      ...+..|+.++......+.. .+.. .+..||.+..+.|-                        +.      +...+++.
T Consensus       104 ~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~ar------------------------lv------~nev~f~~  152 (566)
T KOG2315|consen  104 NPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAAR------------------------LV------SNEVQFYD  152 (566)
T ss_pred             CCceeeeeeccceehhheehhhhcC-cccccccchhhhhh------------------------hh------cceEEEEe
Confidence            35566788777655555552 2222 37777777766663                        11      01111112


Q ss_pred             cCceeeEEeeccccCeeEEEe-cC-C--EEEE-----EeCCCcEEEEecCCceeEEEec----CCCceeEEEEecCCCEE
Q 022303          100 EGRIDIDQWKAHSVGVDQCRM-KR-G--LILT-----GVGDKVMRLWSLEGYKCVEEYS----LPNAASLVDFDFDESKI  166 (299)
Q Consensus       100 ~g~~~~~~~~~h~~~i~~~~~-~~-~--~l~s-----~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l  166 (299)
                      .+......-+-|...|+.+.+ +. .  .+++     .+.-+.++||.......-..+.    .....+.+.|++-+.-|
T Consensus       153 ~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~L  232 (566)
T KOG2315|consen  153 LGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTAL  232 (566)
T ss_pred             cCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceE
Confidence            222222222446667777777 33 2  4443     4556789999876322211111    12234457777766543


Q ss_pred             E--EEc--C---------CeEEEEecCCceeeeeccCCccceeeeeccCCCeE--EEecCCCcEEEEEcCCcceeeeccc
Q 022303          167 V--GLI--G---------TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA--VVGCEDGTARVFDMYSRKCSQIIRM  231 (299)
Q Consensus       167 ~--~~~--d---------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~s~~~d~~i~iwd~~~~~~~~~~~~  231 (299)
                      +  ++.  |         .+++++++++....+..........+.|++.+..+  +-|-.-.++.+||++ +.++..+  
T Consensus       233 LvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--  309 (566)
T KOG2315|consen  233 LVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--  309 (566)
T ss_pred             EEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--
Confidence            2  333  2         37899999866666666533333356899999884  456778899999998 7777776  


Q ss_pred             cCCceeEEEeCCC-CeEEEEeC---CCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          232 HCAPVTSLSLSED-QLIISGSS---LGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       232 ~~~~i~~~~~~~~-~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      ..++=+++-|+|. ++++.++-   -|.+-|||+.+.+++..+.....    +-+.|+|||+++++++--|
T Consensus       310 ~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t----t~~eW~PdGe~flTATTaP  376 (566)
T KOG2315|consen  310 PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT----TVFEWSPDGEYFLTATTAP  376 (566)
T ss_pred             CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc----eEEEEcCCCcEEEEEeccc
Confidence            3567788999998 88777765   57899999999888888876653    5579999999999987543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.98  E-value=2.9e-09  Score=84.35  Aligned_cols=162  Identities=12%  Similarity=0.093  Sum_probs=116.4

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCce------eeeeccCCcccee
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR------SVFPSREGTFMKG  196 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~------~~~~~~~~~~~~~  196 (299)
                      +-++.+.+..+-+-|+++|.. +.|.....+.+..|...+++++ |+.+|.|..+|++...      ...--|...+...
T Consensus       226 yhfs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtsl  304 (425)
T KOG2695|consen  226 YHFSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSL  304 (425)
T ss_pred             eeecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhh
Confidence            346667777788888887643 3455566677788888888888 9999999999998651      2222344444433


Q ss_pred             eeeccCCCeEEEecCCCcEEEEEcCCcce---eeeccccCCceeEEE--eCCC-CeEEEEeCCCcEEEEeCCCCceEEEe
Q 022303          197 LCMRYFDPEAVVGCEDGTARVFDMYSRKC---SQIIRMHCAPVTSLS--LSED-QLIISGSSLGSIAISGLSSDQRVATL  270 (299)
Q Consensus       197 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~i~~~~--~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~  270 (299)
                      --+.+.+++|++.+.+|+|++||++.-++   +.++.+|...-.-+-  +.++ ..+++++.|...+||.++.|.++.++
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence            34556788899999999999999997666   777777754333332  3355 78999999999999999999999888


Q ss_pred             eccCCC--CcEEEEEccC
Q 022303          271 RSTDCT--GHIICLMYPQ  286 (299)
Q Consensus       271 ~~~~~~--~~i~~~~~s~  286 (299)
                      ......  .-+.+++|+.
T Consensus       385 pf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  385 PFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             CCCCccccccccceehhc
Confidence            655431  1466777754

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=3e-07  Score=79.30  Aligned_cols=183  Identities=11%  Similarity=0.017  Sum_probs=108.9

Q ss_pred             eeccccCeeEEEe-cCC-E--E-EEEeCCC--cEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEc-CC--eEE-
Q 022303          108 WKAHSVGVDQCRM-KRG-L--I-LTGVGDK--VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI-GT--RIC-  175 (299)
Q Consensus       108 ~~~h~~~i~~~~~-~~~-~--l-~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~-d~--~i~-  175 (299)
                      +......+..-.| |++ .  + ++...+|  .|.+.++.+++...............|+|||+.|+ .+. +|  .++ 
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~  259 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFI  259 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeE
Confidence            3344445555577 665 2  2 2444444  57777888776554444444445589999999988 432 23  343 


Q ss_pred             -EEecCCc---e--eeeeccCCccceeeeeccCCCeEEEec-CCCcEEEE--EcCC-cceeeeccccCCceeEEEeCCC-
Q 022303          176 -IWRRNGL---R--SVFPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVF--DMYS-RKCSQIIRMHCAPVTSLSLSED-  244 (299)
Q Consensus       176 -v~d~~~~---~--~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iw--d~~~-~~~~~~~~~~~~~i~~~~~~~~-  244 (299)
                       .|++..+   .  .+.....+ .....+|+|++..|+..+ .+|...+|  ++.. +.....+..+...+....|+|| 
T Consensus       260 ~~~~~~~g~~g~~~~lt~~~~~-~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG  338 (428)
T PRK01029        260 QSFSLETGAIGKPRRLLNEAFG-TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG  338 (428)
T ss_pred             EEeecccCCCCcceEeecCCCC-CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence             4666542   1  22222111 112358999999866544 45654555  4432 2233334344456778899999 


Q ss_pred             CeEEEEeCC---CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          245 QLIISGSSL---GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       245 ~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      +.|+..+.+   ..|.+||+.+++... +.....  .+....|+|||++|+..
T Consensus       339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~--~~~~p~wSpDG~~L~f~  388 (428)
T PRK01029        339 KKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPE--NKESPSWAIDSLHLVYS  388 (428)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCC--CccceEECCCCCEEEEE
Confidence            777765543   369999998887543 332223  56788999999988753

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.96  E-value=1.6e-07  Score=81.48  Aligned_cols=158  Identities=16%  Similarity=0.054  Sum_probs=101.4

Q ss_pred             cEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcC---CeEEEEecCCcee-eeeccCCccceeeeeccCCCeEE
Q 022303          133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG---TRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPEAV  207 (299)
Q Consensus       133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d---~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~  207 (299)
                      .|.++|...+................|+|+++.|+ .+.+   ..|++||+.++.. .+....+.. ....|+|++..++
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~-~~~~~SpDG~~la  258 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLN-GAPAWSPDGSKLA  258 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCc-CCeEECCCCCEEE
Confidence            47777877554433334445556699999999988 5433   3799999987642 222222222 2358999999865


Q ss_pred             -EecCCC--cEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC-CC--cEEEEeCCCCceEEEeeccCCCCcEE
Q 022303          208 -VGCEDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LG--SIAISGLSSDQRVATLRSTDCTGHII  280 (299)
Q Consensus       208 -s~~~d~--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~i~  280 (299)
                       +...++  .|.++|+.+++.. .+..+........|+|| +.++..+. +|  .|+++|+.+++.. .+.....  ...
T Consensus       259 ~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~--~~~  334 (430)
T PRK00178        259 FVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGN--YNA  334 (430)
T ss_pred             EEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC--Ccc
Confidence             444444  5888899877654 34444555667889998 76655543 33  5777888777643 3322222  345


Q ss_pred             EEEccCCCCeEEeee
Q 022303          281 CLMYPQFLHMLFFLC  295 (299)
Q Consensus       281 ~~~~s~~g~~l~s~s  295 (299)
                      ...|+|+|++|+..+
T Consensus       335 ~~~~Spdg~~i~~~~  349 (430)
T PRK00178        335 RPRLSADGKTLVMVH  349 (430)
T ss_pred             ceEECCCCCEEEEEE
Confidence            578999999988654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.96  E-value=2.3e-07  Score=80.61  Aligned_cols=158  Identities=16%  Similarity=0.049  Sum_probs=99.6

Q ss_pred             cEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEc-CC--eEEEEecCCcee-eeeccCCccceeeeeccCCCeEE
Q 022303          133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI-GT--RICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPEAV  207 (299)
Q Consensus       133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~-d~--~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~  207 (299)
                      .|.++|....................|+||++.|+ .+. ++  .|+++|+.+++. .+....+.. ....|+|++..++
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~-~~~~wSPDG~~La  277 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGIN-GAPRFSPDGKKLA  277 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCc-CCeeECCCCCEEE
Confidence            56667766544333334444555699999999988 443 22  689999987643 222222222 2458999999865


Q ss_pred             -EecCCCc--EEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC-CC--cEEEEeCCCCceEEEeeccCCCCcEE
Q 022303          208 -VGCEDGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LG--SIAISGLSSDQRVATLRSTDCTGHII  280 (299)
Q Consensus       208 -s~~~d~~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~i~  280 (299)
                       +.+.++.  |.++|+.+++.. .+..+.......+|+|| +.|+..+. ++  .|.++|+.+++.. .+.....  ...
T Consensus       278 ~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~--~~~  353 (448)
T PRK04792        278 LVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGE--QNL  353 (448)
T ss_pred             EEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCC--CCc
Confidence             4555664  778888877653 34344555678899999 76665543 44  4667788777643 3322222  334


Q ss_pred             EEEccCCCCeEEeee
Q 022303          281 CLMYPQFLHMLFFLC  295 (299)
Q Consensus       281 ~~~~s~~g~~l~s~s  295 (299)
                      ..+|+|||++|+..+
T Consensus       354 ~~~~SpDG~~l~~~~  368 (448)
T PRK04792        354 GGSITPDGRSMIMVN  368 (448)
T ss_pred             CeeECCCCCEEEEEE
Confidence            578999999988754

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.91  E-value=4.6e-09  Score=98.89  Aligned_cols=158  Identities=15%  Similarity=0.189  Sum_probs=115.0

Q ss_pred             eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecC--CCceeEEEEecCCCEEE-EEcCCeEEEEecCCce
Q 022303          109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSL--PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR  183 (299)
Q Consensus       109 ~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~  183 (299)
                      +.|-..|.++.- |.. +.+||+.||.+++|....++.+..++.  +..+..+.|+.+|+.+. +..||.+.+|......
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~ 2284 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKP 2284 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcc
Confidence            334445555544 333 899999999999999999988888773  33444499999999988 9999999999987332


Q ss_pred             -eeeeccCCccceeeeeccCCCeEEEec---CCCcEEEEEcCCc---ceeeeccccCCceeEEEeCCC-CeEEEEeCCCc
Q 022303          184 -SVFPSREGTFMKGLCMRYFDPEAVVGC---EDGTARVFDMYSR---KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS  255 (299)
Q Consensus       184 -~~~~~~~~~~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~  255 (299)
                       ...+.|...   ...|.+-+..+++++   .++.+.+||.--.   ..+.  ..|.+.++++++-|. ++|++|+.+|.
T Consensus      2285 ~~s~qchnk~---~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2285 YTSWQCHNKA---LSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred             eeccccCCcc---ccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCc
Confidence             222333322   335555555566553   5788999996532   2233  689999999999999 99999999999


Q ss_pred             EEEEeCCCCceEEEee
Q 022303          256 IAISGLSSDQRVATLR  271 (299)
Q Consensus       256 i~iwd~~~~~~~~~~~  271 (299)
                      |++||++..++.++++
T Consensus      2360 v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred             EEEeehHHHHHHHHhh
Confidence            9999998776655543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.91  E-value=2.5e-07  Score=71.25  Aligned_cols=170  Identities=10%  Similarity=-0.004  Sum_probs=117.6

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCC-CceeEEEEecCCCEEE-EEcCCeEEEEecCCce-ee---eeccCCccceee
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLR-SV---FPSREGTFMKGL  197 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~-~~---~~~~~~~~~~~~  197 (299)
                      -+..++.|.++++.+++-+........+ -...++++++++++++ .+....|..|.+.... ..   ............
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~  209 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN  209 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence            5778889999999988755433322222 1244589999999999 7777899999997653 21   222222223345


Q ss_pred             eeccCCCeEEEecCCCcEEEEEcCCcceee-----eccccCCceeEEEeCCC---CeEEEEeCCCcEEEEeCCCCceEEE
Q 022303          198 CMRYFDPEAVVGCEDGTARVFDMYSRKCSQ-----IIRMHCAPVTSLSLSED---QLIISGSSLGSIAISGLSSDQRVAT  269 (299)
Q Consensus       198 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~i~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~  269 (299)
                      .|+..+..+|++.+||++.|||++.-....     +-..|.+.+..+.|++.   .+|+..-.-+.+.+.|+++++..+.
T Consensus       210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~  289 (344)
T KOG4532|consen  210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV  289 (344)
T ss_pred             eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence            777777779999999999999998643322     22368899999999964   5677777778899999999876665


Q ss_pred             eeccCCC------CcEEEEEccCCCCeEEe
Q 022303          270 LRSTDCT------GHIICLMYPQFLHMLFF  293 (299)
Q Consensus       270 ~~~~~~~------~~i~~~~~s~~g~~l~s  293 (299)
                      +......      +.|..-.|+.++.-..+
T Consensus       290 I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v  319 (344)
T KOG4532|consen  290 IVIPDDVERKHNTQHIFGTNFNNENESNDV  319 (344)
T ss_pred             EecCccccccccccccccccccCCCccccc
Confidence            5443321      24777777776654443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.90  E-value=9e-07  Score=74.61  Aligned_cols=166  Identities=12%  Similarity=0.071  Sum_probs=107.1

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCCeEEEEecC
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRN  180 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~  180 (299)
                      +..+......-..+.+ +++ ++++++.||.|.++|+.+.+.+.+++.......+++++||++++  ....+.+.++|.+
T Consensus        29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~  108 (369)
T PF02239_consen   29 VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE  108 (369)
T ss_dssp             EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred             EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccc
Confidence            4444443333223456 666 88888999999999999999999999888888899999999988  4568999999998


Q ss_pred             CceeeeeccC---------CccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceee-eccccCCceeEEEeCCC-CeEE
Q 022303          181 GLRSVFPSRE---------GTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQ-IIRMHCAPVTSLSLSED-QLII  248 (299)
Q Consensus       181 ~~~~~~~~~~---------~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~-~~l~  248 (299)
                      +.+.+.....         .... .+..++..+. +++.-+.+.|.+.|....+.+. .............|+|+ ++++
T Consensus       109 tle~v~~I~~~~~~~~~~~~Rv~-aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~  187 (369)
T PF02239_consen  109 TLEPVKTIPTGGMPVDGPESRVA-AIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL  187 (369)
T ss_dssp             T--EEEEEE--EE-TTTS---EE-EEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred             cccceeecccccccccccCCCce-eEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceee
Confidence            8753322211         1222 2233455564 5555666888888877654332 22233456778999999 7655


Q ss_pred             E-EeCCCcEEEEeCCCCceEEEee
Q 022303          249 S-GSSLGSIAISGLSSDQRVATLR  271 (299)
Q Consensus       249 ~-~~~dg~i~iwd~~~~~~~~~~~  271 (299)
                      + ...++.|.++|..+++.+..+.
T Consensus       188 va~~~sn~i~viD~~~~k~v~~i~  211 (369)
T PF02239_consen  188 VAANGSNKIAVIDTKTGKLVALID  211 (369)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             ecccccceeEEEeeccceEEEEee
Confidence            5 4567789999999888776653

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.83  E-value=1.2e-05  Score=67.75  Aligned_cols=178  Identities=15%  Similarity=0.112  Sum_probs=112.4

Q ss_pred             EEEe-cCC-EEEEEe-CCCcEEEEecCC-ceeEEE---ec-----------CCCceeEEEEecCCCEEEE--EcCCeEEE
Q 022303          117 QCRM-KRG-LILTGV-GDKVMRLWSLEG-YKCVEE---YS-----------LPNAASLVDFDFDESKIVG--LIGTRICI  176 (299)
Q Consensus       117 ~~~~-~~~-~l~s~~-~dg~i~iwd~~~-~~~~~~---~~-----------~~~~~~~~~~~~~~~~l~~--~~d~~i~v  176 (299)
                      .+.+ +++ +|+++. .+|+|.++++.. +.....   +.           .......+.++|++++++.  -....|.+
T Consensus        91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~  170 (345)
T PF10282_consen   91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV  170 (345)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred             EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEE
Confidence            4555 555 666665 589999999986 443322   21           1122345899999998873  33558999


Q ss_pred             EecCCce------eeeeccCCccceeeeeccCCCeEE-EecCCCcEEEEEcC--Ccc--eeeeccc------cCCceeEE
Q 022303          177 WRRNGLR------SVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMY--SRK--CSQIIRM------HCAPVTSL  239 (299)
Q Consensus       177 ~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~--~~~--~~~~~~~------~~~~i~~~  239 (299)
                      |++....      ..+....+....-+.+++++++++ +.-.++.|.++++.  ++.  .++.+..      .......|
T Consensus       171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  250 (345)
T PF10282_consen  171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI  250 (345)
T ss_dssp             EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred             EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence            9997654      122334444445578999998854 55568889999988  332  2222221      12257889


Q ss_pred             EeCCC-CeEEEEe-CCCcEEEEeCC--CCc--eEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          240 SLSED-QLIISGS-SLGSIAISGLS--SDQ--RVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       240 ~~~~~-~~l~~~~-~dg~i~iwd~~--~~~--~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +++|| ++|.++. ..++|.+|++.  +++  .+..+.....  ..+.++++|+|++|+++..
T Consensus       251 ~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~  311 (345)
T PF10282_consen  251 AISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQ  311 (345)
T ss_dssp             EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEET
T ss_pred             EEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEec
Confidence            99999 7665554 57889999993  233  3344443333  6899999999999998864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.82  E-value=1.7e-06  Score=71.88  Aligned_cols=164  Identities=12%  Similarity=0.066  Sum_probs=117.6

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCC-eEEEEecCCce-eeeeccCCccceeeeec
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGT-RICIWRRNGLR-SVFPSREGTFMKGLCMR  200 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~-~i~v~d~~~~~-~~~~~~~~~~~~~~~~~  200 (299)
                      +++..|. |...+.+...+-.++ +.....+.-..+..+++-++ |..|| .+-+||.++.+ ..+...-+.+. .+.++
T Consensus       334 ~ia~VSR-GkaFi~~~~~~~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs  410 (668)
T COG4946         334 YIALVSR-GKAFIMRPWDGYSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVS  410 (668)
T ss_pred             EEEEEec-CcEEEECCCCCeeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceE-EEEEc
Confidence            6666665 555666655444332 22333444466666666666 88888 99999999987 44444444443 56899


Q ss_pred             cCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCC----cEEEEeCCCCceEEEeeccCC
Q 022303          201 YFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG----SIAISGLSSDQRVATLRSTDC  275 (299)
Q Consensus       201 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~  275 (299)
                      ++++.++.+.....+-+.|+.++.....-+...+-|+.++|+|+ +++|-+--+|    .|+++|+..++....-. ...
T Consensus       411 ~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta  489 (668)
T COG4946         411 PDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA  489 (668)
T ss_pred             CCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence            99999999999999999999999876666667788999999999 9999887766    68999998776544332 222


Q ss_pred             CCcEEEEEccCCCCeEEe
Q 022303          276 TGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       276 ~~~i~~~~~s~~g~~l~s  293 (299)
                        .=.+-+|.|+|++|.-
T Consensus       490 --~DfsPaFD~d~ryLYf  505 (668)
T COG4946         490 --YDFSPAFDPDGRYLYF  505 (668)
T ss_pred             --cccCcccCCCCcEEEE
Confidence              3355689999998754

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.80  E-value=1.1e-07  Score=75.56  Aligned_cols=184  Identities=11%  Similarity=0.101  Sum_probs=114.8

Q ss_pred             ccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCce-----eEEEecCCCc-------------eeEEEEecCCCE--E-EE
Q 022303          112 SVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK-----CVEEYSLPNA-------------ASLVDFDFDESK--I-VG  168 (299)
Q Consensus       112 ~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~-------------~~~~~~~~~~~~--l-~~  168 (299)
                      .+-|.++.| ..| +|++|..+|.|-++.-....     ....++.|++             +..+.|.++++.  + +.
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            346788888 444 99999999999999754221     2233333322             233677766543  3 38


Q ss_pred             EcCCeEEEEecCCceeee--------------------------------------eccCCccceeeeeccCCCeEEEec
Q 022303          169 LIGTRICIWRRNGLRSVF--------------------------------------PSREGTFMKGLCMRYFDPEAVVGC  210 (299)
Q Consensus       169 ~~d~~i~v~d~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~l~s~~  210 (299)
                      +.|.+|++|.+.......                                      ..|.-++. .++++.+...++++ 
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiN-SIS~NsD~Et~lSA-  182 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHIN-SISVNSDKETFLSA-  182 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEee-eeeecCccceEeec-
Confidence            999999999886432100                                      00111111 12444444445654 


Q ss_pred             CCCcEEEEEcCCcc---eeeecccc-----CCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCceE----EEeeccCCC
Q 022303          211 EDGTARVFDMYSRK---CSQIIRMH-----CAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRV----ATLRSTDCT  276 (299)
Q Consensus       211 ~d~~i~iwd~~~~~---~~~~~~~~-----~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~  276 (299)
                      +|=.|.+|++.--.   .+-.++.+     ...|++..|+|.  .+++-.++.|+|++-|++...+-    +.+.....+
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence            56789999986322   12222222     357899999997  88999999999999999854321    111111110


Q ss_pred             ----------CcEEEEEccCCCCeEEeeecc
Q 022303          277 ----------GHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       277 ----------~~i~~~~~s~~g~~l~s~s~~  297 (299)
                                ..|..+.|+++|+|+++-.+.
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDyl  293 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDYL  293 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEeccc
Confidence                      368889999999999987654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.79  E-value=7.2e-08  Score=76.60  Aligned_cols=185  Identities=13%  Similarity=0.171  Sum_probs=119.0

Q ss_pred             ccCeeEEEe-c-CC--EEEEEeCCCcEEEEecCCce-----------------------------------eEEEec-CC
Q 022303          112 SVGVDQCRM-K-RG--LILTGVGDKVMRLWSLEGYK-----------------------------------CVEEYS-LP  151 (299)
Q Consensus       112 ~~~i~~~~~-~-~~--~l~s~~~dg~i~iwd~~~~~-----------------------------------~~~~~~-~~  151 (299)
                      ...|+.+.| + .+  .++..+.|.+|++|.+....                                   +.+.+. .|
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH  163 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH  163 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence            356788888 3 23  78888899999999875321                                   111111 24


Q ss_pred             CceeE-EEEecCCCEEEEEcCCeEEEEecCCceeeee---ccCCc------cceeeeeccCCCe-EEEecCCCcEEEEEc
Q 022303          152 NAASL-VDFDFDESKIVGLIGTRICIWRRNGLRSVFP---SREGT------FMKGLCMRYFDPE-AVVGCEDGTARVFDM  220 (299)
Q Consensus       152 ~~~~~-~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~---~~~~~------~~~~~~~~~~~~~-l~s~~~d~~i~iwd~  220 (299)
                      ...+. +.++.|...++.+.|=.|.+|++.-....+.   .....      +....-|+|..-. ++-.+..|+|++-|+
T Consensus       164 tyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm  243 (433)
T KOG1354|consen  164 TYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM  243 (433)
T ss_pred             eeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence            44443 8888888888888999999999874432221   11110      1111235555433 666778899999999


Q ss_pred             CCcceee----ec------------cccCCceeEEEeCCC-CeEEEEeCCCcEEEEeC-CCCceEEEeeccCCC------
Q 022303          221 YSRKCSQ----II------------RMHCAPVTSLSLSED-QLIISGSSLGSIAISGL-SSDQRVATLRSTDCT------  276 (299)
Q Consensus       221 ~~~~~~~----~~------------~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~------  276 (299)
                      +......    .+            ..--..|..+.|+++ +++++-.. -+|++||+ ...+++.+++.|...      
T Consensus       244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~  322 (433)
T KOG1354|consen  244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCS  322 (433)
T ss_pred             hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHH
Confidence            8532110    11            111246888999998 88887654 57999999 456777777666531      


Q ss_pred             -------CcEEEEEccCCCCeEEeeecc
Q 022303          277 -------GHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       277 -------~~i~~~~~s~~g~~l~s~s~~  297 (299)
                             ..-..++|+-++.++++||+-
T Consensus       323 lYEnD~IfdKFec~~sg~~~~v~TGsy~  350 (433)
T KOG1354|consen  323 LYENDAIFDKFECSWSGNDSYVMTGSYN  350 (433)
T ss_pred             HhhccchhheeEEEEcCCcceEeccccc
Confidence                   123567899899999999863

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.78  E-value=2e-08  Score=55.31  Aligned_cols=38  Identities=34%  Similarity=0.563  Sum_probs=35.5

Q ss_pred             cceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEe
Q 022303          223 RKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG  260 (299)
Q Consensus       223 ~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd  260 (299)
                      ++++.++.+|..+|++++|+|+ .+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4677889999999999999999 9999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.78  E-value=7.3e-08  Score=83.58  Aligned_cols=190  Identities=13%  Similarity=0.117  Sum_probs=131.9

Q ss_pred             eEEeeccccCeeEEEecCC--EEEEEeCCCcEEEEecCCceeEEEec---CCCceeEEEEecCCCEEE-EEcCCeEEEEe
Q 022303          105 IDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYS---LPNAASLVDFDFDESKIV-GLIGTRICIWR  178 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d  178 (299)
                      -+++.||++.|.-+.|.++  .|-|...+|.|.+|-+-.|+....+.   ..+-+.+++|+.+|..++ ...||.|.+=.
T Consensus        64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs  143 (1189)
T KOG2041|consen   64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS  143 (1189)
T ss_pred             hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence            4677999999999999544  89999999999999988776543332   233445599999999998 99999999988


Q ss_pred             cCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc-------ceee----eccccCCceeEEEeC-----
Q 022303          179 RNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-------KCSQ----IIRMHCAPVTSLSLS-----  242 (299)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~----~~~~~~~~i~~~~~~-----  242 (299)
                      +.+.+.--+...+....-+-|+++...++.+-.+|.+.+||.+-.       .+.-    .+......|..+.|.     
T Consensus       144 vdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~  223 (1189)
T KOG2041|consen  144 VDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ  223 (1189)
T ss_pred             eccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence            877653222233322223468888888778888899999997521       0100    111122335556554     


Q ss_pred             ---CC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          243 ---ED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       243 ---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                         |+ -.|+++-.+|.+.|..-.+...-..+... .  .|....|+++|..|+.++..
T Consensus       224 ~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg-m--~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  224 PVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG-M--KIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             cCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc-c--EeecceecCCCcEEEEccCc
Confidence               46 68999999999888765443222222222 3  78999999999999998864

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.76  E-value=1.1e-05  Score=69.38  Aligned_cols=174  Identities=13%  Similarity=-0.017  Sum_probs=108.3

Q ss_pred             CeeEEEe-cCC-E-EEEEeC---CCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-E-EcC--CeEEEEecCCce
Q 022303          114 GVDQCRM-KRG-L-ILTGVG---DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIG--TRICIWRRNGLR  183 (299)
Q Consensus       114 ~i~~~~~-~~~-~-l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~d--~~i~v~d~~~~~  183 (299)
                      .+..-.| |++ . ++..+.   +..|.++|+.+++...............|+||++.++ . +.+  ..|+++|+.++.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            4555677 665 3 554443   3568999999887766555444455588999999877 3 223  478888987764


Q ss_pred             e-eeeccCCccceeeeeccCCCeEEEec-CCC--cEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCC-----
Q 022303          184 S-VFPSREGTFMKGLCMRYFDPEAVVGC-EDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL-----  253 (299)
Q Consensus       184 ~-~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d-----  253 (299)
                      . .+....+. .....|+|++..++..+ ..+  .|.+.|+.+++..+.... ...  ...|+|+ +.++..+..     
T Consensus       269 ~~~LT~~~~~-d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~  344 (419)
T PRK04043        269 LTQITNYPGI-DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEF  344 (419)
T ss_pred             EEEcccCCCc-cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCccc
Confidence            2 22222221 11347999998865444 233  588888887766443321 111  2489999 766665543     


Q ss_pred             ----CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          254 ----GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       254 ----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                          ..|.+.|+.+++. +.+....   ......|+|||+.++..+
T Consensus       345 ~~~~~~I~v~d~~~g~~-~~LT~~~---~~~~p~~SPDG~~I~f~~  386 (419)
T PRK04043        345 GKNTFNLYLISTNSDYI-RRLTANG---VNQFPRFSSDGGSIMFIK  386 (419)
T ss_pred             CCCCcEEEEEECCCCCe-EECCCCC---CcCCeEECCCCCEEEEEE
Confidence                3688889887764 3443322   233578999999887654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.74  E-value=1.5e-05  Score=66.19  Aligned_cols=162  Identities=11%  Similarity=0.081  Sum_probs=104.9

Q ss_pred             CCCcEEEEecCCceeEEEecCCCce--------eEEEEecCCCEEE-EE-c-CCeEEEEecCCceeee-----------e
Q 022303          130 GDKVMRLWSLEGYKCVEEYSLPNAA--------SLVDFDFDESKIV-GL-I-GTRICIWRRNGLRSVF-----------P  187 (299)
Q Consensus       130 ~dg~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~-~~-~-d~~i~v~d~~~~~~~~-----------~  187 (299)
                      .+..|.+||..+++.+..+..+...        ..++++|||++++ .. . +..|.+.|+.+.+.+.           .
T Consensus        75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~  154 (352)
T TIGR02658        75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFP  154 (352)
T ss_pred             CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence            5889999999999999988864332        2589999999887 44 2 6899999998753111           0


Q ss_pred             c---------cCCccce---------------ee-e------e----cc-CCCeEEEecCCCcEEEEEcCC-----ccee
Q 022303          188 S---------REGTFMK---------------GL-C------M----RY-FDPEAVVGCEDGTARVFDMYS-----RKCS  226 (299)
Q Consensus       188 ~---------~~~~~~~---------------~~-~------~----~~-~~~~l~s~~~d~~i~iwd~~~-----~~~~  226 (299)
                      .         ..+....               ++ .      -    .+ ++..++.... |.|.+.|+..     .+..
T Consensus       155 t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~  233 (352)
T TIGR02658       155 TANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAI  233 (352)
T ss_pred             ecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceeccee
Confidence            0         0000000               00 0      1    11 3444444444 8999999543     2222


Q ss_pred             eeccc-------cCCceeEEEeCCC-CeEEEEe----------CCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCC
Q 022303          227 QIIRM-------HCAPVTSLSLSED-QLIISGS----------SLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL  288 (299)
Q Consensus       227 ~~~~~-------~~~~i~~~~~~~~-~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g  288 (299)
                      ..+..       ..+.+.-++++++ +.+.+..          ..+.|.++|..+++.+..+....   .+..++++|||
T Consensus       234 ~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dg  310 (352)
T TIGR02658       234 EAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDA  310 (352)
T ss_pred             eeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCC
Confidence            22211       1223344999988 6666532          12579999999999999998654   79999999999


Q ss_pred             C-eEEeee
Q 022303          289 H-MLFFLC  295 (299)
Q Consensus       289 ~-~l~s~s  295 (299)
                      + +|++.+
T Consensus       311 kp~lyvtn  318 (352)
T TIGR02658       311 KPLLYALS  318 (352)
T ss_pred             CeEEEEeC
Confidence            9 777654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.71  E-value=1.6e-08  Score=95.38  Aligned_cols=149  Identities=21%  Similarity=0.241  Sum_probs=112.5

Q ss_pred             cCeeEEEe-c-CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE----EEcCCeEEEEecCCce--
Q 022303          113 VGVDQCRM-K-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV----GLIGTRICIWRRNGLR--  183 (299)
Q Consensus       113 ~~i~~~~~-~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~~d~~i~v~d~~~~~--  183 (299)
                      +.|+.+.| . ++.+..+..||-+.+|.+. .++....+.|+.... +.|-.  ..++    .+.++.+.+||..-+.  
T Consensus      2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~ 2328 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN 2328 (2439)
T ss_pred             chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc
Confidence            67777777 3 3489999999999999987 677777777776555 66654  3444    3446799999986442  


Q ss_pred             -eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022303          184 -SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLS  262 (299)
Q Consensus       184 -~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~  262 (299)
                       .+-..|.+... +++..|..+.+++|+.+|.|.+||++..+.+..++.         ++...++++|+..|.|+||++.
T Consensus      2329 s~v~~~H~~gaT-~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2329 SLVHTCHDGGAT-VLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LDTREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred             ceeeeecCCCce-EEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hhhhheeeccCcccceEEEEcc
Confidence             33355555443 668888888899999999999999998887777754         3423789999999999999998


Q ss_pred             CCceEEEeeccC
Q 022303          263 SDQRVATLRSTD  274 (299)
Q Consensus       263 ~~~~~~~~~~~~  274 (299)
                      .-..++++...+
T Consensus      2399 ~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2399 EFGLLHTFPSEH 2410 (2439)
T ss_pred             ccchhhcCchhh
Confidence            887777776543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.67  E-value=5.6e-07  Score=76.28  Aligned_cols=133  Identities=9%  Similarity=-0.023  Sum_probs=102.3

Q ss_pred             cCCCEEE-EEcCCeEEEEecCCceeeeecc----CCccceeeee--------------------ccCCCeEEEecCCCcE
Q 022303          161 FDESKIV-GLIGTRICIWRRNGLRSVFPSR----EGTFMKGLCM--------------------RYFDPEAVVGCEDGTA  215 (299)
Q Consensus       161 ~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~----~~~~~~~~~~--------------------~~~~~~l~s~~~d~~i  215 (299)
                      |...+++ ...||.+++||...++....-.    .........|                    +-+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            3456777 8899999999998765221110    0000001111                    1111226778889999


Q ss_pred             EEEEcCCcceeeecc--ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEE
Q 022303          216 RVFDMYSRKCSQIIR--MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLF  292 (299)
Q Consensus       216 ~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  292 (299)
                      .+|+...++....+.  .|.+.|+++.++.+ ..|-+++.|+.+..|+...+..+..+.....  .+.+++.+|||+.|+
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~--~~~sl~is~D~~~l~  160 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP--LVSSLCISPDGKILL  160 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC--ccceEEEcCCCCEEE
Confidence            999999999887776  78899999999888 8999999999999999999999999988887  899999999999999


Q ss_pred             eee
Q 022303          293 FLC  295 (299)
Q Consensus       293 s~s  295 (299)
                      ++|
T Consensus       161 ~as  163 (541)
T KOG4547|consen  161 TAS  163 (541)
T ss_pred             ecc
Confidence            876

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.63  E-value=3.3e-07  Score=72.89  Aligned_cols=164  Identities=19%  Similarity=0.209  Sum_probs=100.5

Q ss_pred             cCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeE-EEecCCCceeE-EEEecCCCEEE-EEcCCeE
Q 022303          100 EGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCV-EEYSLPNAASL-VDFDFDESKIV-GLIGTRI  174 (299)
Q Consensus       100 ~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i  174 (299)
                      .+-..+.++.+|.++|.++.| +.+ .|++|..|..+.+||+--.+-+ ....+|...+. +..-+--+.++ +..||.|
T Consensus       185 ~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i  264 (404)
T KOG1409|consen  185 NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGI  264 (404)
T ss_pred             cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeE
Confidence            344448888999999999999 433 9999999999999998754432 34455544443 55555555666 9999999


Q ss_pred             EEEecCCceeeeecc--------------------------------CCccceeeeeccCCCe--EEEecCCCcEEEEEc
Q 022303          175 CIWRRNGLRSVFPSR--------------------------------EGTFMKGLCMRYFDPE--AVVGCEDGTARVFDM  220 (299)
Q Consensus       175 ~v~d~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~--l~s~~~d~~i~iwd~  220 (299)
                      -+|+.+........-                                -......+|....++.  ..+-+..-.+++-|.
T Consensus       265 ~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~  344 (404)
T KOG1409|consen  265 VVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDS  344 (404)
T ss_pred             EEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecc
Confidence            999987533111000                                0000011122211111  222222333444432


Q ss_pred             CC-------cceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 022303          221 YS-------RKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS  263 (299)
Q Consensus       221 ~~-------~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~  263 (299)
                      -.       ..++..+..-...|+.+.+... .+|+|++.|..|+|||++.
T Consensus       345 c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  345 CYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             cchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence            11       1234444333445999999888 8999999999999999863

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.63  E-value=3.6e-06  Score=72.71  Aligned_cols=161  Identities=11%  Similarity=-0.018  Sum_probs=93.7

Q ss_pred             CcEEEEecCCceeEEEecCCCceeEEEEecCCCE--EE--EEcC--CeEEEEecCCce-eeeeccCCccceeeeeccCCC
Q 022303          132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK--IV--GLIG--TRICIWRRNGLR-SVFPSREGTFMKGLCMRYFDP  204 (299)
Q Consensus       132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~--~~~d--~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~  204 (299)
                      ..|.+.|...+..............-.|+|||+.  ++  ...+  ..|++.++.+++ ..+....+... ...|+|++.
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~  243 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL-MPTFSPRKK  243 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc-ceEECCCCC
Confidence            3666777665544433333344455899999975  32  2223  378888998765 22232333322 358999999


Q ss_pred             eEEEec-C----CCcEEEEEcCCc---ceeeeccccCCceeEEEeCCC-CeEEEEe-CCCcEEEE--eCCC-CceEEEee
Q 022303          205 EAVVGC-E----DGTARVFDMYSR---KCSQIIRMHCAPVTSLSLSED-QLIISGS-SLGSIAIS--GLSS-DQRVATLR  271 (299)
Q Consensus       205 ~l~s~~-~----d~~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg~i~iw--d~~~-~~~~~~~~  271 (299)
                      .|+..+ .    +-.+..|++..+   +..+............+|+|| +.|+..+ .+|...+|  ++.. +.....+.
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt  323 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT  323 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence            866543 2    223444776653   322222222234467899999 7666655 46655555  4432 23344444


Q ss_pred             ccCCCCcEEEEEccCCCCeEEeee
Q 022303          272 STDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       272 ~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ....  .+....|+|||+.|+..+
T Consensus       324 ~~~~--~~~~p~wSPDG~~Laf~~  345 (428)
T PRK01029        324 KKYR--NSSCPAWSPDGKKIAFCS  345 (428)
T ss_pred             cCCC--CccceeECCCCCEEEEEE
Confidence            4433  677889999999988654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.61  E-value=5e-05  Score=63.91  Aligned_cols=171  Identities=10%  Similarity=0.074  Sum_probs=109.1

Q ss_pred             EEEEeCC----CcEEEEec--CCcee--EEEecCCCceeEEEEecCCCEEE-EEc----CCeEEEEecCCc--ee--eee
Q 022303          125 ILTGVGD----KVMRLWSL--EGYKC--VEEYSLPNAASLVDFDFDESKIV-GLI----GTRICIWRRNGL--RS--VFP  187 (299)
Q Consensus       125 l~s~~~d----g~i~iwd~--~~~~~--~~~~~~~~~~~~~~~~~~~~~l~-~~~----d~~i~v~d~~~~--~~--~~~  187 (299)
                      ++.|+..    +.|.+|++  ++++.  +..+........++++|++++|. +..    ++.|..|++...  ..  +-.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            4566666    78988888  45554  33444445556699999999988 544    468999988754  21  111


Q ss_pred             cc-CCccceeeeeccCCCeEEEec-CCCcEEEEEcCC-cceeee---cc----------ccCCceeEEEeCCC-CeEEEE
Q 022303          188 SR-EGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYS-RKCSQI---IR----------MHCAPVTSLSLSED-QLIISG  250 (299)
Q Consensus       188 ~~-~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~~~~~~---~~----------~~~~~i~~~~~~~~-~~l~~~  250 (299)
                      .. .+....-+++.+++.+++++. .+|.+.++++.. +.....   +.          .......++.++|+ +++++.
T Consensus        82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~  161 (345)
T PF10282_consen   82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP  161 (345)
T ss_dssp             EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred             eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence            11 233333468888999977765 589999999986 333222   11          12345778999999 766665


Q ss_pred             e-CCCcEEEEeCCCCc--e--EEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          251 S-SLGSIAISGLSSDQ--R--VATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       251 ~-~dg~i~iwd~~~~~--~--~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      . ....|.+|++....  +  ...+....+. ..+.++|+|+|+++.+...
T Consensus       162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~-GPRh~~f~pdg~~~Yv~~e  211 (345)
T PF10282_consen  162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGS-GPRHLAFSPDGKYAYVVNE  211 (345)
T ss_dssp             ETTTTEEEEEEE-TTS-TEEEEEEEECSTTS-SEEEEEE-TTSSEEEEEET
T ss_pred             ecCCCEEEEEEEeCCCceEEEeeccccccCC-CCcEEEEcCCcCEEEEecC
Confidence            4 45679999997654  3  2334444433 7899999999999887654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.61  E-value=2e-07  Score=51.20  Aligned_cols=35  Identities=20%  Similarity=0.581  Sum_probs=31.5

Q ss_pred             eeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEe
Q 022303          104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWS  138 (299)
Q Consensus       104 ~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd  138 (299)
                      .++++++|.++|+++.| +++ +|++++.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            36788999999999999 555 999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=6.3e-06  Score=69.77  Aligned_cols=146  Identities=14%  Similarity=0.163  Sum_probs=105.1

Q ss_pred             cEEEEecCCceeEEEecCCCceeEEEEecCCCEEE---EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEe
Q 022303          133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV---GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVG  209 (299)
Q Consensus       133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  209 (299)
                      ++++.+++..++.-.+...+++..+.|+++++-++   |..=..+.+||++.. .++...++... .+-++|.+..++.+
T Consensus       252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df~egpRN-~~~fnp~g~ii~lA  329 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDFPEGPRN-TAFFNPHGNIILLA  329 (566)
T ss_pred             eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeCCCCCcc-ceEECCCCCEEEEe
Confidence            68888888556666666667777899999997755   566679999999876 34444555544 35789999996665


Q ss_pred             cC---CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC------CCcEEEEeCCCCceEEEeeccCCCCcE
Q 022303          210 CE---DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS------LGSIAISGLSSDQRVATLRSTDCTGHI  279 (299)
Q Consensus       210 ~~---d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~i  279 (299)
                      +.   .|.|-+||+.+.+.+..+....  -+-+.|+|| ++++|++.      |+.++||+. +|..+..-.-..   ..
T Consensus       330 GFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s---EL  403 (566)
T KOG2315|consen  330 GFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS---EL  403 (566)
T ss_pred             ecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhH---hH
Confidence            54   4789999999988888886533  456789999 98888875      788999998 576665443222   24


Q ss_pred             EEEEccC
Q 022303          280 ICLMYPQ  286 (299)
Q Consensus       280 ~~~~~s~  286 (299)
                      ..+.|-|
T Consensus       404 ~qv~W~P  410 (566)
T KOG2315|consen  404 LQVEWRP  410 (566)
T ss_pred             hheeeee
Confidence            4455543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.60  E-value=7.2e-07  Score=68.44  Aligned_cols=158  Identities=14%  Similarity=0.188  Sum_probs=99.2

Q ss_pred             eEEeecccc--CeeEEEecCCEEEEEeCCCcEEEEecCCce-eEEEecC-CCceeEEEEecCCCEEEEE------cCCeE
Q 022303          105 IDQWKAHSV--GVDQCRMKRGLILTGVGDKVMRLWSLEGYK-CVEEYSL-PNAASLVDFDFDESKIVGL------IGTRI  174 (299)
Q Consensus       105 ~~~~~~h~~--~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~------~d~~i  174 (299)
                      .+++..|++  +-..+..+++-++++..||.+.+++.+... ....+.. +......+....++.+.+.      .-+..
T Consensus        82 ~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~  161 (319)
T KOG4714|consen   82 FKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNF  161 (319)
T ss_pred             eeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccce
Confidence            344444443  334455577789999999999999876511 1111111 1111112222333333322      23456


Q ss_pred             EEEecCCceeeeec-cCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcce-eeeccccCCceeEEEeCCC--CeEEE
Q 022303          175 CIWRRNGLRSVFPS-REGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED--QLIIS  249 (299)
Q Consensus       175 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~--~~l~~  249 (299)
                      +.|+++........ ........+|.+|..+. +++|++||.+.+||.++... ...+..|+.+|+.+-|+|.  ..|++
T Consensus       162 ~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft  241 (319)
T KOG4714|consen  162 YANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFT  241 (319)
T ss_pred             eeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeE
Confidence            67776654322111 11111334577777666 77889999999999998643 4556689999999999986  78999


Q ss_pred             EeCCCcEEEEeCC
Q 022303          250 GSSLGSIAISGLS  262 (299)
Q Consensus       250 ~~~dg~i~iwd~~  262 (299)
                      +++||.+..||..
T Consensus       242 ~sedGslw~wdas  254 (319)
T KOG4714|consen  242 CSEDGSLWHWDAS  254 (319)
T ss_pred             ecCCCcEEEEcCC
Confidence            9999999999986

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.60  E-value=4.6e-06  Score=71.15  Aligned_cols=148  Identities=14%  Similarity=0.057  Sum_probs=100.0

Q ss_pred             CCEEEEEeCCCcEEEEecCCceeEEEecCCCc-----------eeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeeec
Q 022303          122 RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA-----------ASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS  188 (299)
Q Consensus       122 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~  188 (299)
                      ++.++.+..+|.+..+|..+|+.+........           ... ..+  .+..++ ++.+|.++.+|..+++.....
T Consensus       190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~  267 (377)
T TIGR03300       190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKR  267 (377)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEee
Confidence            45678888899999999999987765442110           000 111  234555 888999999999888655443


Q ss_pred             cCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc-CCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceE
Q 022303          189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH-CAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRV  267 (299)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  267 (299)
                      .....   ......+..++.++.+|.+..+|..+++.+...... .....+... .+..+++++.+|.|+++|..+|+.+
T Consensus       268 ~~~~~---~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i-~g~~l~~~~~~G~l~~~d~~tG~~~  343 (377)
T TIGR03300       268 DASSY---QGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV-VGGYLVVGDFEGYLHWLSREDGSFV  343 (377)
T ss_pred             ccCCc---cCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE-ECCEEEEEeCCCEEEEEECCCCCEE
Confidence            32211   122345677888899999999999999887665321 111222222 1357888999999999999999999


Q ss_pred             EEeeccCC
Q 022303          268 ATLRSTDC  275 (299)
Q Consensus       268 ~~~~~~~~  275 (299)
                      .+++.+..
T Consensus       344 ~~~~~~~~  351 (377)
T TIGR03300       344 ARLKTDGS  351 (377)
T ss_pred             EEEEcCCC
Confidence            88876553

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.58  E-value=4.8e-06  Score=64.34  Aligned_cols=166  Identities=8%  Similarity=-0.079  Sum_probs=108.0

Q ss_pred             CCEEEEEeCCCcEEEEecCCceeE-EEecCCCceeE----EEEecCCCEEEEEcCCeEEEEecCCceeeeeccCCc-cce
Q 022303          122 RGLILTGVGDKVMRLWSLEGYKCV-EEYSLPNAASL----VDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGT-FMK  195 (299)
Q Consensus       122 ~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~----~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~  195 (299)
                      +++|+.|+..|...+|...+.+.. +....+...+.    .+- .....++++.|.++++.++......+..|... ...
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd-~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n  162 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCD-LKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN  162 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcc-cccceeeccCCcceeEEEEecCcccceeecccccee
Confidence            348999999999999999866533 22222222111    111 12234458999999999887665333333321 122


Q ss_pred             eeeeccCCCeEEEecCCCcEEEEEcCCc-ceeee--ccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCce-EEE-
Q 022303          196 GLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQI--IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQR-VAT-  269 (299)
Q Consensus       196 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~-  269 (299)
                      ..++++++..+++.++...|-.|.++.. +.+..  .....+.-.+..|+.. ..+|++..||++.|||++.... ..+ 
T Consensus       163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~  242 (344)
T KOG4532|consen  163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI  242 (344)
T ss_pred             eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence            3578888888999999999999988753 22222  2233444567778876 8899999999999999987432 222 


Q ss_pred             --eeccCCCCcEEEEEccCCCC
Q 022303          270 --LRSTDCTGHIICLMYPQFLH  289 (299)
Q Consensus       270 --~~~~~~~~~i~~~~~s~~g~  289 (299)
                        -+.++.+ .++.+.|++.|.
T Consensus       243 sstrp~hnG-a~R~c~Fsl~g~  263 (344)
T KOG4532|consen  243 SSTRPHHNG-AFRVCRFSLYGL  263 (344)
T ss_pred             cccCCCCCC-ceEEEEecCCCc
Confidence              2233333 899999998653

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.58  E-value=4.9e-08  Score=86.55  Aligned_cols=181  Identities=10%  Similarity=0.028  Sum_probs=121.2

Q ss_pred             eEEeeccccCeeEEEecC--CEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE--EEcC-CeEEEEe
Q 022303          105 IDQWKAHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV--GLIG-TRICIWR  178 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~--~~~d-~~i~v~d  178 (299)
                      .++++.|+..-+|++|..  +.|+.|+..|.|+++++.+|.....+.+|...+. +.-+.+|..++  ++.. .-..+|+
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence            567789999999999943  3999999999999999999999999999987776 88899998876  3333 3567898


Q ss_pred             cCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc----ccCCceeEEEeCCC-CeEEEEeCC
Q 022303          179 RNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR----MHCAPVTSLSLSED-QLIISGSSL  253 (299)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~i~~~~~~~~-~~l~~~~~d  253 (299)
                      .............  ...+.|+.....-+.|.......+||++++..+.++-    +....-+...|+|. .+++-   |
T Consensus      1174 ~~s~~~~~Hsf~e--d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---d 1248 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDE--DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---D 1248 (1516)
T ss_pred             cccccCccccccc--cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---C
Confidence            8653211111111  1122343333334556666778999999998877642    22233377889998 55543   4


Q ss_pred             CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          254 GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       254 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      |  .+||++..+.++.|..-..  .+ .=.|+|.|..++..|
T Consensus      1249 G--vLWDvR~~~aIh~FD~ft~--~~-~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1249 G--VLWDVRIPEAIHRFDQFTD--YG-GGGFHPSGNEVIINS 1285 (1516)
T ss_pred             c--eeeeeccHHHHhhhhhhee--cc-cccccCCCceEEeec
Confidence            4  3799988776666643332  11 124777777666544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.56  E-value=3.6e-05  Score=61.15  Aligned_cols=168  Identities=14%  Similarity=0.060  Sum_probs=107.7

Q ss_pred             cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCceeeeec-cCC----ccce
Q 022303          121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS-REG----TFMK  195 (299)
Q Consensus       121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~-~~~----~~~~  195 (299)
                      .++.+++++.++.|..||..+|+.+..+.........-...++..++++.++.++.+|..+++..... ...    ....
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~  114 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRS  114 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeecccccccccccc
Confidence            56688888999999999999999998888654433322334455555888899999999888755542 111    1111


Q ss_pred             eeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCc-----------eeEEEeCCCCeEEEEeCCCc-EEEEeCCC
Q 022303          196 GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP-----------VTSLSLSEDQLIISGSSLGS-IAISGLSS  263 (299)
Q Consensus       196 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----------i~~~~~~~~~~l~~~~~dg~-i~iwd~~~  263 (299)
                      .......+..++.+..++.|..+|+++|+.+.........           ...+.+..+ .+..++.++. +.+ |+.+
T Consensus       115 ~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~t  192 (238)
T PF13360_consen  115 SSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLAT  192 (238)
T ss_dssp             -SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTT
T ss_pred             ccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCC
Confidence            2234444777888888999999999999998777543321           123333333 6666777775 555 9999


Q ss_pred             CceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          264 DQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       264 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ++.+....  ..  .+..+ ...++..|+.++
T Consensus       193 g~~~w~~~--~~--~~~~~-~~~~~~~l~~~~  219 (238)
T PF13360_consen  193 GEKLWSKP--IS--GIYSL-PSVDGGTLYVTS  219 (238)
T ss_dssp             TEEEEEEC--SS---ECEC-EECCCTEEEEEE
T ss_pred             CCEEEEec--CC--CccCC-ceeeCCEEEEEe
Confidence            98664333  22  33331 234556665554

...

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.54  E-value=3.9e-06  Score=66.98  Aligned_cols=188  Identities=13%  Similarity=0.202  Sum_probs=117.1

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEec-CCceeEEEec--CCCceeEEEEecCCCEEE-EEcCCeEEEEe
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSL-EGYKCVEEYS--LPNAASLVDFDFDESKIV-GLIGTRICIWR  178 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~-~~~~~~~~~~--~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d  178 (299)
                      .+.++||.+.|++... +.+ -+++.+.|.++++|-- +.++.-..+.  -+.++..+.+.++...|+ +-..|++.-+.
T Consensus        17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs   96 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA   96 (404)
T ss_pred             hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence            3455899999998765 544 8999999999999953 3454433333  345666688888888888 88889888886


Q ss_pred             cCCce------eeeeccCCccceeeeeccCCCe---------------------------------------EEEecCCC
Q 022303          179 RNGLR------SVFPSREGTFMKGLCMRYFDPE---------------------------------------AVVGCEDG  213 (299)
Q Consensus       179 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~---------------------------------------l~s~~~d~  213 (299)
                      +...-      .....|...+.. +-++-....                                       ...|...|
T Consensus        97 ~sedfnkm~~~r~~~~h~~~v~~-~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~g  175 (404)
T KOG1409|consen   97 LSEDFNKMTFLKDYLAHQARVSA-IVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSG  175 (404)
T ss_pred             hhhhhhhcchhhhhhhhhcceee-EEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccccc
Confidence            64310      111111111110 001111111                                       12333344


Q ss_pred             cEEEEEcC--CcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc-eEEEeeccCCCCcEEEEEccCCCC
Q 022303          214 TARVFDMY--SRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ-RVATLRSTDCTGHIICLMYPQFLH  289 (299)
Q Consensus       214 ~i~iwd~~--~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~g~  289 (299)
                      .|.+-.+.  .-..+..+.+|.+.+.+++|.+. ..|.+|..|..+.+||+.-++ ....+.+|.+  .|+.+...+--+
T Consensus       176 qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~--kV~~l~~~~~t~  253 (404)
T KOG1409|consen  176 QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND--KVQALSYAQHTR  253 (404)
T ss_pred             ceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchh--hhhhhhhhhhhe
Confidence            44433322  23356667789999999999998 899999999999999996443 3445556665  566665555555


Q ss_pred             eEEeee
Q 022303          290 MLFFLC  295 (299)
Q Consensus       290 ~l~s~s  295 (299)
                      .|++++
T Consensus       254 ~l~S~~  259 (404)
T KOG1409|consen  254 QLISCG  259 (404)
T ss_pred             eeeecc
Confidence            555543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.50  E-value=2.8e-06  Score=74.89  Aligned_cols=171  Identities=10%  Similarity=0.062  Sum_probs=114.9

Q ss_pred             cccCeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeecc
Q 022303          111 HSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSR  189 (299)
Q Consensus       111 h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~  189 (299)
                      ..+.++|+++.+..|+-|+.+|.|++.+.+. .. .+.-.|...     ..+|.+++ |+.||+|.|..+-+.+......
T Consensus        38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d  110 (846)
T KOG2066|consen   38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQYD  110 (846)
T ss_pred             hhhHHHHHHhhcceeeeccccceEEEEecCC-cc-ccccccccc-----ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence            3456778888888999999999999998763 32 222222222     56788999 9999999998887765333222


Q ss_pred             CCccceeeeeccC-----CCeEEEecCCCcEEEEEcCCcc-ee-eeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022303          190 EGTFMKGLCMRYF-----DPEAVVGCEDGTARVFDMYSRK-CS-QIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLS  262 (299)
Q Consensus       190 ~~~~~~~~~~~~~-----~~~l~s~~~d~~i~iwd~~~~~-~~-~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~  262 (299)
                      -.....+++++|+     ...+++|+..| +.++.-+--. .. .......++|.++.|..+ ++|-++.+| |++||+.
T Consensus       111 f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~-lIAWand~G-v~vyd~~  187 (846)
T KOG2066|consen  111 FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN-LIAWANDDG-VKVYDTP  187 (846)
T ss_pred             cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc-EEEEecCCC-cEEEecc
Confidence            2233335677777     34489999888 7777643211 11 134456789999999654 788888777 9999999


Q ss_pred             CCceEEEeeccCCC----CcEEEEEccCCCCeE
Q 022303          263 SDQRVATLRSTDCT----GHIICLMYPQFLHML  291 (299)
Q Consensus       263 ~~~~~~~~~~~~~~----~~i~~~~~s~~g~~l  291 (299)
                      +++.+..++.....    .....+.|.++.+.+
T Consensus       188 ~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV  220 (846)
T KOG2066|consen  188 TRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV  220 (846)
T ss_pred             ccceeeccCCCCCCCCcccCCCceEecCCCeEE
Confidence            98888777655431    123456776665444

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.48  E-value=3.6e-05  Score=64.31  Aligned_cols=89  Identities=11%  Similarity=0.156  Sum_probs=71.8

Q ss_pred             CCeEEEecCCC-cEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEE
Q 022303          203 DPEAVVGCEDG-TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHII  280 (299)
Q Consensus       203 ~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~  280 (299)
                      +..++.|..|| .+-++|.++++... +...-+.|.++..+++ ++++++.....|-+.|+.+|.....-+...+  -|+
T Consensus       371 ~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~--lIt  447 (668)
T COG4946         371 PEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG--LIT  447 (668)
T ss_pred             CcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccc--eeE
Confidence            33467888888 89999999776544 4456678999999999 9999999999999999999875444444445  899


Q ss_pred             EEEccCCCCeEEee
Q 022303          281 CLMYPQFLHMLFFL  294 (299)
Q Consensus       281 ~~~~s~~g~~l~s~  294 (299)
                      .+.|||+++++|-+
T Consensus       448 df~~~~nsr~iAYa  461 (668)
T COG4946         448 DFDWHPNSRWIAYA  461 (668)
T ss_pred             EEEEcCCceeEEEe
Confidence            99999999999865

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=1.2e-06  Score=72.23  Aligned_cols=198  Identities=13%  Similarity=0.058  Sum_probs=133.2

Q ss_pred             CceeeEEeeccccCeeEEEe-cCC-EEEEEeC-CCcEEEEecCCceeEEEecCCCceeEEEEec-CC---CEEE--EEcC
Q 022303          101 GRIDIDQWKAHSVGVDQCRM-KRG-LILTGVG-DKVMRLWSLEGYKCVEEYSLPNAASLVDFDF-DE---SKIV--GLIG  171 (299)
Q Consensus       101 g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~---~~l~--~~~d  171 (299)
                      |...++.+..|.+.|.+++. .++ ++.|.+. |..++++|+++...+..++...-+-.++|.. .|   ..++  ...+
T Consensus        42 GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~s  121 (558)
T KOG0882|consen   42 GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKS  121 (558)
T ss_pred             ceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccC
Confidence            33446667889999998877 456 7888777 9999999999877765555443333333322 22   1344  4457


Q ss_pred             CeEEEEecCCce---eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCC------cce---------eeeccccC
Q 022303          172 TRICIWRRNGLR---SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS------RKC---------SQIIRMHC  233 (299)
Q Consensus       172 ~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~---------~~~~~~~~  233 (299)
                      +.+.++|-....   ..+..........+.+.+.+..+++....|.|.-|....      .+.         +..+....
T Consensus       122 g~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~K  201 (558)
T KOG0882|consen  122 GKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAK  201 (558)
T ss_pred             CCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccc
Confidence            899999987543   223322222223456667777788888899999998772      111         11222345


Q ss_pred             CceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccC-------------------------------CCCcEEE
Q 022303          234 APVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTD-------------------------------CTGHIIC  281 (299)
Q Consensus       234 ~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------------~~~~i~~  281 (299)
                      ....++.|+|+ ..+.+-+.|..|++++.++|++++.+....                               +...-+.
T Consensus       202 t~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~  281 (558)
T KOG0882|consen  202 TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTN  281 (558)
T ss_pred             cCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccce
Confidence            67899999999 889999999999999999887665442110                               0024467


Q ss_pred             EEccCCCCeEEeeeccc
Q 022303          282 LMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       282 ~~~s~~g~~l~s~s~~~  298 (299)
                      +.|...|++|+-|++.+
T Consensus       282 ~~fdes~~flly~t~~g  298 (558)
T KOG0882|consen  282 AVFDESGNFLLYGTILG  298 (558)
T ss_pred             eEEcCCCCEEEeeccee
Confidence            78999999999988765

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.46  E-value=0.0004  Score=55.53  Aligned_cols=175  Identities=13%  Similarity=0.041  Sum_probs=110.1

Q ss_pred             eeEEEe--cCCEEEEEeCCCcEEEEecCCceeEEEecC-----CCc-eeEEEEecCCCEEEEEc-C--------CeEEEE
Q 022303          115 VDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSL-----PNA-ASLVDFDFDESKIVGLI-G--------TRICIW  177 (299)
Q Consensus       115 i~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~l~~~~-d--------~~i~v~  177 (299)
                      ...+.+  +++.|+.+..++.. ++|..+++.......     ... ...++++++|++.++.. .        |.++.+
T Consensus        42 ~~G~~~~~~~g~l~v~~~~~~~-~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~  120 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVADSGGIA-VVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRI  120 (246)
T ss_dssp             EEEEEEECTTSEEEEEETTCEE-EEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEE
T ss_pred             CceEEEEccCCEEEEEEcCceE-EEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEE
Confidence            344444  45677777765554 449998865544332     122 22399999999766433 2        567788


Q ss_pred             ecCCceeeeeccCCccceeeeeccCCCeEE-EecCCCcEEEEEcCCcce-------eeeccccCCceeEEEeCCC-CeEE
Q 022303          178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKC-------SQIIRMHCAPVTSLSLSED-QLII  248 (299)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~-------~~~~~~~~~~i~~~~~~~~-~~l~  248 (299)
                      +.......... .-.....+++++++..|+ +-+..+.|..+++.....       ...+....+..-.+++..+ ++.+
T Consensus       121 ~~~~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~v  199 (246)
T PF08450_consen  121 DPDGKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWV  199 (246)
T ss_dssp             ETTSEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEE
T ss_pred             CCCCeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEE
Confidence            87732222211 122233579999998754 667788899999863221       1222222234788999988 7777


Q ss_pred             EEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEcc-CCCCeEEee
Q 022303          249 SGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYP-QFLHMLFFL  294 (299)
Q Consensus       249 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~s~  294 (299)
                      +....+.|.++|.+ |+.+..+.....  .+++++|. ++.+.|+..
T Consensus       200 a~~~~~~I~~~~p~-G~~~~~i~~p~~--~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  200 ADWGGGRIVVFDPD-GKLLREIELPVP--RPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEETTTEEEEEETT-SCEEEEEE-SSS--SEEEEEEESTTSSEEEEE
T ss_pred             EEcCCCEEEEECCC-ccEEEEEcCCCC--CEEEEEEECCCCCEEEEE
Confidence            77789999999987 999998887755  79999994 666655543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=1.9e-05  Score=67.08  Aligned_cols=96  Identities=7%  Similarity=0.014  Sum_probs=61.1

Q ss_pred             eeeccCCCeEEE--ec-CCCcEEEEEcCC-c---ceeeeccccCCceeEEEeCCC-CeEEEE---eCCCcEEEEeCCCCc
Q 022303          197 LCMRYFDPEAVV--GC-EDGTARVFDMYS-R---KCSQIIRMHCAPVTSLSLSED-QLIISG---SSLGSIAISGLSSDQ  265 (299)
Q Consensus       197 ~~~~~~~~~l~s--~~-~d~~i~iwd~~~-~---~~~~~~~~~~~~i~~~~~~~~-~~l~~~---~~dg~i~iwd~~~~~  265 (299)
                      .+|.|.++.+++  |. ...++.+|.+++ .   +.+..+.  ....+.+.|+|. ++++.+   |..|.+..+|..-..
T Consensus       451 FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~  528 (698)
T KOG2314|consen  451 FAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD  528 (698)
T ss_pred             eeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhh
Confidence            346666666433  22 234577777663 1   2223332  345788999998 877765   457899999987434


Q ss_pred             eEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          266 RVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       266 ~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +..+-...+.  ..+.+.|+|.|+|+++++.
T Consensus       529 ~k~~~~~eh~--~at~veWDPtGRYvvT~ss  557 (698)
T KOG2314|consen  529 LKDTASPEHF--AATEVEWDPTGRYVVTSSS  557 (698)
T ss_pred             hhhccCcccc--ccccceECCCCCEEEEeee
Confidence            3333333333  6788999999999999874

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.44  E-value=4.9e-05  Score=72.72  Aligned_cols=149  Identities=11%  Similarity=0.090  Sum_probs=100.2

Q ss_pred             EEEe-c-CC-EEEEEeCCCcEEEEecCCceeEEEecC----------------CCceeEEEEecCCCEEE--EEcCCeEE
Q 022303          117 QCRM-K-RG-LILTGVGDKVMRLWSLEGYKCVEEYSL----------------PNAASLVDFDFDESKIV--GLIGTRIC  175 (299)
Q Consensus       117 ~~~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~--~~~d~~i~  175 (299)
                      .+++ + ++ ++++.+.++.|++||..++.... +.+                -..+..++++|+++.|+  -+.++.|+
T Consensus       687 gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir  765 (1057)
T PLN02919        687 DVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR  765 (1057)
T ss_pred             EEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence            4666 4 34 66777788999999988765432 111                01233489999998554  55578999


Q ss_pred             EEecCCceeeeec---------------cCC-------ccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc---
Q 022303          176 IWRRNGLRSVFPS---------------REG-------TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR---  230 (299)
Q Consensus       176 v~d~~~~~~~~~~---------------~~~-------~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---  230 (299)
                      +||+.++......               ..+       .....+++.+++..+++-..++.|++||..++.......   
T Consensus       766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~  845 (1057)
T PLN02919        766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK  845 (1057)
T ss_pred             EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCC
Confidence            9998865321100               000       011245777777777888889999999998766543221   


Q ss_pred             ----------ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCce
Q 022303          231 ----------MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQR  266 (299)
Q Consensus       231 ----------~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~  266 (299)
                                ..-.....++++++ +++++-+.++.|++||+.+++.
T Consensus       846 ~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        846 AGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                      11235778999998 8888888999999999988764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.43  E-value=0.00011  Score=58.26  Aligned_cols=143  Identities=13%  Similarity=0.054  Sum_probs=94.7

Q ss_pred             CCCcEEEEecCCceeEEEecCCCceeE-E-EEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeE
Q 022303          130 GDKVMRLWSLEGYKCVEEYSLPNAASL-V-DFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA  206 (299)
Q Consensus       130 ~dg~i~iwd~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l  206 (299)
                      .+|+|..+|..+|+.+........... + ...+++..++ ++.++.++.||..+++............. .....+..+
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-~~~~~~~~v   79 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG-APVVDGGRV   79 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS-GEEEETTEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc-eeeeccccc
Confidence            368999999999999988875321111 2 1333444555 88999999999988875543332211111 123446667


Q ss_pred             EEecCCCcEEEEEcCCcceeeec-cccCC-----ceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccC
Q 022303          207 VVGCEDGTARVFDMYSRKCSQII-RMHCA-----PVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTD  274 (299)
Q Consensus       207 ~s~~~d~~i~iwd~~~~~~~~~~-~~~~~-----~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  274 (299)
                      +.+..++.+..+|..+|+.+... .....     ......+. +..++.+..++.|..+|+++|+.+.......
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred             ccccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence            77778889999999999998874 32211     11222222 3577888889999999999999988886643

...

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.42  E-value=0.00013  Score=69.93  Aligned_cols=179  Identities=10%  Similarity=0.024  Sum_probs=109.7

Q ss_pred             eEEEe-cC-CEEEEE-eCCCcEEEEecCCceeEEEecC------------------CCceeEEEEecCC-CEEE-EEcCC
Q 022303          116 DQCRM-KR-GLILTG-VGDKVMRLWSLEGYKCVEEYSL------------------PNAASLVDFDFDE-SKIV-GLIGT  172 (299)
Q Consensus       116 ~~~~~-~~-~~l~s~-~~dg~i~iwd~~~~~~~~~~~~------------------~~~~~~~~~~~~~-~~l~-~~~d~  172 (299)
                      ..+++ ++ +.|+.+ ...+.|+++|..++.. .++.+                  -.....++++|++ .+++ .+.++
T Consensus       627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~  705 (1057)
T PLN02919        627 QGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH  705 (1057)
T ss_pred             cEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence            44566 33 344444 4457889899876653 22211                  1123458999954 4444 56678


Q ss_pred             eEEEEecCCceee-eecc------CC--------ccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeec-------
Q 022303          173 RICIWRRNGLRSV-FPSR------EG--------TFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQII-------  229 (299)
Q Consensus       173 ~i~v~d~~~~~~~-~~~~------~~--------~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~-------  229 (299)
                      .|++||..++... +...      .+        .....+++++++.. +++-..++.|++||+.++......       
T Consensus       706 ~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~  785 (1057)
T PLN02919        706 QIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS  785 (1057)
T ss_pred             eEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC
Confidence            9999998765421 1110      00        11223678888885 456667799999999876532110       


Q ss_pred             ------cc--------cCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccC-----------CCCcEEEEE
Q 022303          230 ------RM--------HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTD-----------CTGHIICLM  283 (299)
Q Consensus       230 ------~~--------~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~i~~~~  283 (299)
                            -.        .-.....++++++ .++++-+.++.|++||..++..........           .......++
T Consensus       786 ~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIa  865 (1057)
T PLN02919        786 DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLA  865 (1057)
T ss_pred             cccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEE
Confidence                  00        0113468899988 888888899999999998776543321100           001578899


Q ss_pred             ccCCCCeEEeee
Q 022303          284 YPQFLHMLFFLC  295 (299)
Q Consensus       284 ~s~~g~~l~s~s  295 (299)
                      ++++|+.+++.+
T Consensus       866 vd~dG~lyVaDt  877 (1057)
T PLN02919        866 LGENGRLFVADT  877 (1057)
T ss_pred             EeCCCCEEEEEC
Confidence            999999777654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.39  E-value=0.00048  Score=55.76  Aligned_cols=186  Identities=9%  Similarity=0.036  Sum_probs=115.8

Q ss_pred             ccccCeeEEEe-cCC-EEEEEeCC---CcEEEEecCC--ceeE--EEecCCCc-eeEEEEecCCCEEE--EEcCCeEEEE
Q 022303          110 AHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEG--YKCV--EEYSLPNA-ASLVDFDFDESKIV--GLIGTRICIW  177 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~-~l~s~~~d---g~i~iwd~~~--~~~~--~~~~~~~~-~~~~~~~~~~~~l~--~~~d~~i~v~  177 (299)
                      ...+..+-+.+ +++ .|.++-.+   |.|.-|.++.  |+..  ........ ...+++++++++++  ....|.|.++
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence            44555666777 455 67776554   6777776663  5543  22223333 35599999999988  4446899999


Q ss_pred             ecCCcee-----eeeccCCc---------cceeeeeccCCCeEEEec-CCCcEEEEEcCCcceeeecc---ccCCceeEE
Q 022303          178 RRNGLRS-----VFPSREGT---------FMKGLCMRYFDPEAVVGC-EDGTARVFDMYSRKCSQIIR---MHCAPVTSL  239 (299)
Q Consensus       178 d~~~~~~-----~~~~~~~~---------~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~---~~~~~i~~~  239 (299)
                      .++....     -...+.+.         -.....+.|+++++++.+ .-.+|.+|++..++....-.   ........|
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi  196 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI  196 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence            9865311     11111111         012346788888877654 33479999999776532221   334557899


Q ss_pred             EeCCC-CeEEEEeC-CCcEEEEeCCCC-ceEEEeeccC-------CCCcEEEEEccCCCCeEEeee
Q 022303          240 SLSED-QLIISGSS-LGSIAISGLSSD-QRVATLRSTD-------CTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       240 ~~~~~-~~l~~~~~-dg~i~iwd~~~~-~~~~~~~~~~-------~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      .|+|+ ++..+.++ +++|.+|..... ..+..++...       +......+..+|||++|.++-
T Consensus       197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN  262 (346)
T COG2706         197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN  262 (346)
T ss_pred             EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec
Confidence            99999 76555554 999999998763 2233332211       112567888999999998863

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.38  E-value=1.5e-05  Score=68.00  Aligned_cols=133  Identities=7%  Similarity=-0.001  Sum_probs=90.2

Q ss_pred             cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeecc--CCccceee
Q 022303          121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSR--EGTFMKGL  197 (299)
Q Consensus       121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~  197 (299)
                      .++.++.++.+|.+..+|.++++.+....... .....  ..+..++ ++.+|.++.+|..+++......  .+....  
T Consensus       240 ~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~s--  314 (377)
T TIGR03300       240 DGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLT--  314 (377)
T ss_pred             ECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccc--
Confidence            35578888899999999999999877665322 11122  2345555 8889999999998876544331  111111  


Q ss_pred             eeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCcee-EEEeCCCCeEEEEeCCCcEEEE
Q 022303          198 CMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVT-SLSLSEDQLIISGSSLGSIAIS  259 (299)
Q Consensus       198 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~-~~~~~~~~~l~~~~~dg~i~iw  259 (299)
                      .....+..+++++.+|.+.++|..+++.+..+..+...+. +..+ .++.|+.++.||.|+.+
T Consensus       315 sp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~-~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       315 APAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVV-VGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             cCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEE-ECCEEEEEeCCceEEEe
Confidence            1122466788999999999999999999988875554332 2222 23468888899988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.37  E-value=0.00038  Score=54.65  Aligned_cols=177  Identities=15%  Similarity=0.150  Sum_probs=102.2

Q ss_pred             cCCEEEEEeCCCcEEEEecCCc--eeEEEec---CCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce-eeeecc---
Q 022303          121 KRGLILTGVGDKVMRLWSLEGY--KCVEEYS---LPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR-SVFPSR---  189 (299)
Q Consensus       121 ~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~---~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~-~~~~~~---  189 (299)
                      ++|.++..-.|..|.|-..++.  ..+.+.+   .+.+... ++|+||+..|+ +...|+|++||+.+.. ..+...   
T Consensus         7 ~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~   86 (282)
T PF15492_consen    7 SDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSF   86 (282)
T ss_pred             CCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccccc
Confidence            4556666666777776655432  2223333   3344455 99999999999 9999999999998643 111110   


Q ss_pred             CCcc-c--eeeeeccC------CCeEEEecCCCcEEEEEcCCc-----ceeeecc---ccCCceeEEEeCCC-CeEEEEe
Q 022303          190 EGTF-M--KGLCMRYF------DPEAVVGCEDGTARVFDMYSR-----KCSQIIR---MHCAPVTSLSLSED-QLIISGS  251 (299)
Q Consensus       190 ~~~~-~--~~~~~~~~------~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~---~~~~~i~~~~~~~~-~~l~~~~  251 (299)
                      .+.. .  ..+.+...      ...|++-...|.++-|-+..+     +....+.   .+...|.++.++|. ++|++|+
T Consensus        87 ~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG  166 (282)
T PF15492_consen   87 PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGG  166 (282)
T ss_pred             CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEec
Confidence            1111 1  11112111      123777778888887765322     2223332   24667999999999 8777765


Q ss_pred             C-CC----------cEEEEeCCCCceE--------------------EEe--------eccCCCCcEEEEEccCCCCeEE
Q 022303          252 S-LG----------SIAISGLSSDQRV--------------------ATL--------RSTDCTGHIICLMYPQFLHMLF  292 (299)
Q Consensus       252 ~-dg----------~i~iwd~~~~~~~--------------------~~~--------~~~~~~~~i~~~~~s~~g~~l~  292 (299)
                      . ..          -+.-|.+-++.+-                    ..+        +.... ..|..|..||||+.||
T Consensus       167 ~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~-d~i~kmSlSPdg~~La  245 (282)
T PF15492_consen  167 CEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQ-DGIFKMSLSPDGSLLA  245 (282)
T ss_pred             cCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCC-CceEEEEECCCCCEEE
Confidence            4 11          2555654322110                    000        11111 2799999999999999


Q ss_pred             eeeccc
Q 022303          293 FLCFLP  298 (299)
Q Consensus       293 s~s~~~  298 (299)
                      +..+-|
T Consensus       246 ~ih~sG  251 (282)
T PF15492_consen  246 CIHFSG  251 (282)
T ss_pred             EEEcCC
Confidence            876543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.36  E-value=1.5e-05  Score=71.53  Aligned_cols=147  Identities=12%  Similarity=0.151  Sum_probs=104.6

Q ss_pred             CeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEc---------CCeEEEEecCCce
Q 022303          114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI---------GTRICIWRRNGLR  183 (299)
Q Consensus       114 ~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~---------d~~i~v~d~~~~~  183 (299)
                      .|.-+...+.++.+|...|+|.+-|..+.+.++++..|...++ +|+-.|+.|+ ++.         |.-|+|||++..+
T Consensus       179 ~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS-DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr  257 (1118)
T KOG1275|consen  179 GVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS-DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR  257 (1118)
T ss_pred             ceEEEEecCcEEEeecccceEEeecCCcCceeeeeecccccee-eeeccCCeEEEeecccccccccccchhhhhhhhhhh
Confidence            3555555666999999999999999999999999999976554 5666788887 444         4468999999775


Q ss_pred             eeeeccCCccceeeeeccCCC-eEEEecCCCcEEEEEcCC---c-ceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEE
Q 022303          184 SVFPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYS---R-KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA  257 (299)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~---~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~  257 (299)
                      .+....-......+.+.|.-. .+++++..|...+-|..+   . .-+..+......+..+.++++ +.++.|..+|.|.
T Consensus       258 al~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~  337 (1118)
T KOG1275|consen  258 ALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVN  337 (1118)
T ss_pred             ccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEe
Confidence            433222111112345555533 388889999999988432   2 112223344455999999998 9999999999999


Q ss_pred             EEeC
Q 022303          258 ISGL  261 (299)
Q Consensus       258 iwd~  261 (299)
                      +|.-
T Consensus       338 ~wa~  341 (1118)
T KOG1275|consen  338 LWAD  341 (1118)
T ss_pred             eecC
Confidence            9973

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.35  E-value=1.2e-05  Score=72.00  Aligned_cols=167  Identities=11%  Similarity=0.080  Sum_probs=121.0

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCccceeeeec
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMR  200 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~  200 (299)
                      .++.|+....+..+|+.+.+..+......+.+. -+..+++.+. |...|+|.+-|.++.+  ..+..|.+.   +.++.
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~-imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s---iSDfD  224 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVT-IMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS---ISDFD  224 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCCceE-EEEecCcEEEeecccceEEeecCCcCceeeeeeccccc---eeeee
Confidence            677888888888889999888877765543332 2234567777 9999999999998775  556666665   44788


Q ss_pred             cCCCeEEEecC---------CCcEEEEEcCCcceeeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCC-Cce-E
Q 022303          201 YFDPEAVVGCE---------DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSS-DQR-V  267 (299)
Q Consensus       201 ~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~-~~~-~  267 (299)
                      -.++.|++++.         |..|++||++.-+.+..+.-+.++ .-+.|.|.  ..+++++..|...+-|..+ +.+ .
T Consensus       225 v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~  303 (1118)
T KOG1275|consen  225 VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA  303 (1118)
T ss_pred             ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCcc
Confidence            88888888875         445899999988877766554443 66788898  7899999999999999332 121 2


Q ss_pred             EEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          268 ATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       268 ~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      .....+..+..+..+.+|++|+.|+.|-
T Consensus       304 ~~~~v~p~~s~i~~fDiSsn~~alafgd  331 (1118)
T KOG1275|consen  304 GVKMVNPNGSGISAFDISSNGDALAFGD  331 (1118)
T ss_pred             ceeEEccCCCcceeEEecCCCceEEEec
Confidence            2333333222699999999999998764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.35  E-value=4.7e-06  Score=72.78  Aligned_cols=151  Identities=14%  Similarity=0.141  Sum_probs=109.3

Q ss_pred             cccCeeEEEec--CCEEEEEeCCCcEEEEecCCce---------------eEEEecCCCceeE-EEEecCCCEEE-EEcC
Q 022303          111 HSVGVDQCRMK--RGLILTGVGDKVMRLWSLEGYK---------------CVEEYSLPNAASL-VDFDFDESKIV-GLIG  171 (299)
Q Consensus       111 h~~~i~~~~~~--~~~l~s~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d  171 (299)
                      .+....|+.|.  .++++.|+.||.+++-.+.+..               .-+++++|+..+. +.|+.+.+.+- ...+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            34567889994  4499999999999999876431               2345667876665 89998888888 8889


Q ss_pred             CeEEEEecCCce---eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeE
Q 022303          172 TRICIWRRNGLR---SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI  247 (299)
Q Consensus       172 ~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l  247 (299)
                      |-|.+|-+-.+.   .........+...++|+.++..++....||.|.+=.++ |..+.--.-.......+.|++| +.+
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~~l~hv~ws~D~~~~  171 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQLLAHVLWSEDLEQA  171 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcchheccceeecccHHHH
Confidence            999999987664   23333333444467899999999888999988776665 3333211111223457889999 888


Q ss_pred             EEEeCCCcEEEEeCC
Q 022303          248 ISGSSLGSIAISGLS  262 (299)
Q Consensus       248 ~~~~~dg~i~iwd~~  262 (299)
                      +.+-.+|.+.++|.+
T Consensus       172 Lf~~ange~hlydnq  186 (1189)
T KOG2041|consen  172 LFKKANGETHLYDNQ  186 (1189)
T ss_pred             HhhhcCCcEEEeccc
Confidence            888889999999975

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.33  E-value=2.6e-06  Score=67.19  Aligned_cols=186  Identities=13%  Similarity=0.171  Sum_probs=110.7

Q ss_pred             cccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCce-----eEEEecCCCc-------------eeEEEEecCCC---EEE
Q 022303          111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK-----CVEEYSLPNA-------------ASLVDFDFDES---KIV  167 (299)
Q Consensus       111 h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~-------------~~~~~~~~~~~---~l~  167 (299)
                      ..+.|+++.| ..+ ||++|...|.|.+|.-+...     ....++.|+.             +..+.|..++.   +|+
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            3457889999 344 99999999999999865432     1223444332             23355544332   244


Q ss_pred             EEcCCeEEEEecCCce-------------------------ee-eec---c-------------CCcccee--eeeccCC
Q 022303          168 GLIGTRICIWRRNGLR-------------------------SV-FPS---R-------------EGTFMKG--LCMRYFD  203 (299)
Q Consensus       168 ~~~d~~i~v~d~~~~~-------------------------~~-~~~---~-------------~~~~~~~--~~~~~~~  203 (299)
                      .+.|.+|++|.+....                         .. ...   |             ..+...+  +.++.+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            9999999999875421                         00 000   0             0011111  2233333


Q ss_pred             CeEEEecCCCcEEEEEcCCcc---eeeecccc-----CCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCce------E
Q 022303          204 PEAVVGCEDGTARVFDMYSRK---CSQIIRMH-----CAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQR------V  267 (299)
Q Consensus       204 ~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~-----~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~------~  267 (299)
                      ..+++ .+|=.|.+|++.-..   .+..++.|     ...|++..|+|.  ..+.-.++.|.|++-|+++..+      +
T Consensus       185 et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            33444 456789999876321   12233333     356899999997  7788888899999999985321      1


Q ss_pred             EEe--eccCC------CCcEEEEEccCCCCeEEeeecc
Q 022303          268 ATL--RSTDC------TGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       268 ~~~--~~~~~------~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ...  .+...      ...|..+.|+++|+|+++-++.
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl  301 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL  301 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc
Confidence            111  11000      0268889999999999987654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.33  E-value=0.00017  Score=62.21  Aligned_cols=156  Identities=10%  Similarity=0.026  Sum_probs=92.7

Q ss_pred             CcEEEEecCCceeEEEecCCCceeEEEEecCCCE-EE-EEcC---CeEEEEecCCcee-eeeccCCccceeeeeccCCCe
Q 022303          132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK-IV-GLIG---TRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPE  205 (299)
Q Consensus       132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~-~~~d---~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~  205 (299)
                      ..|.+-|.... ..+.+..........|+|+++. ++ .+.+   ..|+++|+.+++. .+....+. .....|+|++..
T Consensus       169 ~~l~~~d~dg~-~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~  246 (419)
T PRK04043        169 SNIVLADYTLT-YQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSK  246 (419)
T ss_pred             ceEEEECCCCC-ceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCc-EEeeEECCCCCE
Confidence            35555555433 2333333334556999999985 55 4443   4799999987752 23333332 224579999988


Q ss_pred             EE-EecC--CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEe-CCC--cEEEEeCCCCceEEEeeccCCCCc
Q 022303          206 AV-VGCE--DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SLG--SIAISGLSSDQRVATLRSTDCTGH  278 (299)
Q Consensus       206 l~-s~~~--d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~  278 (299)
                      ++ +.+.  +..|.++|+..++.. .+..+........|+|| +.|+..+ ..+  .|.+.|+.+++..+... ...  .
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~--~  322 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK--N  322 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCC--c
Confidence            54 3333  356888898877643 34333333345679999 6555554 333  58888888776533222 111  1


Q ss_pred             EEEEEccCCCCeEEeee
Q 022303          279 IICLMYPQFLHMLFFLC  295 (299)
Q Consensus       279 i~~~~~s~~g~~l~s~s  295 (299)
                        ...|+|||++|+..+
T Consensus       323 --~~~~SPDG~~Ia~~~  337 (419)
T PRK04043        323 --NSSVSTYKNYIVYSS  337 (419)
T ss_pred             --CceECCCCCEEEEEE
Confidence              248999999988665

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.32  E-value=0.00014  Score=68.43  Aligned_cols=182  Identities=11%  Similarity=-0.019  Sum_probs=117.8

Q ss_pred             cccCeeEEEe-cCC-EEEEEeCCCcEEEE----ecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCC--
Q 022303          111 HSVGVDQCRM-KRG-LILTGVGDKVMRLW----SLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNG--  181 (299)
Q Consensus       111 h~~~i~~~~~-~~~-~l~s~~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~--  181 (299)
                      ..+.|.++.+ ++. .++.+..+|.|.+.    +..+.+....-....++.+++|+||+..++ ++.++++.+....=  
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~  153 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP  153 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence            3457778877 555 88899999999999    555544333333456778899999999999 88888887754210  


Q ss_pred             ---------------------c--eeeeeccC------------------C-----ccceeeeeccCCCeEEEecC---C
Q 022303          182 ---------------------L--RSVFPSRE------------------G-----TFMKGLCMRYFDPEAVVGCE---D  212 (299)
Q Consensus       182 ---------------------~--~~~~~~~~------------------~-----~~~~~~~~~~~~~~l~s~~~---d  212 (299)
                                           +  +..|.+..                  +     .....++|.-++.++++.+-   .
T Consensus       154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~  233 (928)
T PF04762_consen  154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPET  233 (928)
T ss_pred             EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCC
Confidence                                 0  00010000                  0     01224678889999776553   2


Q ss_pred             ---CcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC---CCcEEEEeCCCCceEEEeeccC--CCCcEEEEE
Q 022303          213 ---GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS---LGSIAISGLSSDQRVATLRSTD--CTGHIICLM  283 (299)
Q Consensus       213 ---~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~  283 (299)
                         ..+++|+.+ |.....-..-.+--.+++|.|. +++|+...   ...|.+|.. +|..-..|.-..  ....|..++
T Consensus       234 ~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~  311 (928)
T PF04762_consen  234 GSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELA  311 (928)
T ss_pred             CceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEE
Confidence               568999966 6655544433444457899999 88888765   345667774 454444443321  112899999


Q ss_pred             ccCCCCeEEee
Q 022303          284 YPQFLHMLFFL  294 (299)
Q Consensus       284 ~s~~g~~l~s~  294 (299)
                      |++|+..||.-
T Consensus       312 Wn~ds~iLAv~  322 (928)
T PF04762_consen  312 WNSDSEILAVW  322 (928)
T ss_pred             ECCCCCEEEEE
Confidence            99999999873

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.32  E-value=0.00037  Score=57.98  Aligned_cols=97  Identities=8%  Similarity=-0.068  Sum_probs=73.3

Q ss_pred             CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EE---------cCCeEEEEecCCceeeeeccC--------Cc
Q 022303          132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GL---------IGTRICIWRRNGLRSVFPSRE--------GT  192 (299)
Q Consensus       132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~---------~d~~i~v~d~~~~~~~~~~~~--------~~  192 (299)
                      ++|.+.|..+++.+.++........+ ++||++.++  .+         .++.|.+||..+.+.+-+...        +.
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~  105 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT  105 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence            89999999999999999865444445 999999887  44         478999999998864433221        22


Q ss_pred             cceeeeeccCCCeEEEec-C-CCcEEEEEcCCcceeeec
Q 022303          193 FMKGLCMRYFDPEAVVGC-E-DGTARVFDMYSRKCSQII  229 (299)
Q Consensus       193 ~~~~~~~~~~~~~l~s~~-~-d~~i~iwd~~~~~~~~~~  229 (299)
                      ....+++++++..++... . +..|.+.|+.+++.+.++
T Consensus       106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei  144 (352)
T TIGR02658       106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM  144 (352)
T ss_pred             ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence            233578999999987665 3 788999999988766654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=1.5e-05  Score=64.99  Aligned_cols=77  Identities=16%  Similarity=0.182  Sum_probs=65.9

Q ss_pred             EeeccccCeeEEEe-c--CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCCeEEEEecCC
Q 022303          107 QWKAHSVGVDQCRM-K--RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNG  181 (299)
Q Consensus       107 ~~~~h~~~i~~~~~-~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~  181 (299)
                      .+.+|...|..++| |  .|++..++.+..|+|.|+++...+..+..+..+.+++|+.++...+  |-.+|.|.+||++.
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            34677788999988 3  2389999999999999999999999999998888999998887655  77899999999987


Q ss_pred             ce
Q 022303          182 LR  183 (299)
Q Consensus       182 ~~  183 (299)
                      ..
T Consensus       268 ~~  269 (463)
T KOG1645|consen  268 PE  269 (463)
T ss_pred             CC
Confidence            64

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.28  E-value=3.6e-06  Score=64.72  Aligned_cols=191  Identities=10%  Similarity=0.118  Sum_probs=109.0

Q ss_pred             eeEEeecccc-CeeEEEecCC-EEEEEeCCCcEEEEecCCceeEEEec------------CCCce-eEEEEecCCCEEE-
Q 022303          104 DIDQWKAHSV-GVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYS------------LPNAA-SLVDFDFDESKIV-  167 (299)
Q Consensus       104 ~~~~~~~h~~-~i~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~------------~~~~~-~~~~~~~~~~~l~-  167 (299)
                      .+-...+|.+ .|..+.+..+ .|+++-.++.+......++.+....+            .+.++ ..-+.+-.++.++ 
T Consensus        27 ~vD~i~~~~d~~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~  106 (319)
T KOG4714|consen   27 LVDEIMQHADVKLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCI  106 (319)
T ss_pred             chhhcccccceEEEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEe
Confidence            3333344444 2455556444 78888888887777665544433222            11111 1111222334455 


Q ss_pred             EEcCCeEEEEecCCceeeee----ccCCccceeeeeccCCCeEEEec-----CCCcEEEEEcCCcceeeeccccCCceeE
Q 022303          168 GLIGTRICIWRRNGLRSVFP----SREGTFMKGLCMRYFDPEAVVGC-----EDGTARVFDMYSRKCSQIIRMHCAPVTS  238 (299)
Q Consensus       168 ~~~d~~i~v~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~i~~  238 (299)
                      +..||.+.+++.+.......    .+.+..  ..+....+..+.++.     .-+..+.|+++..+.+..-......|++
T Consensus       107 ~~~dg~~~v~s~~~~~~~~~~i~~~~~~~a--s~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~  184 (319)
T KOG4714|consen  107 GYADGSLAVFSTDKDLALMSRIPSIHSGSA--SRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA  184 (319)
T ss_pred             cCCCceEEEEechHHHhhhhhccccccccc--ccceeecccEEecCCcceEeeccceeeecccccccccccccccccchh
Confidence            89999999999876321111    111111  112222233333322     1234556666644333222222344899


Q ss_pred             EEeCCC--CeEEEEeCCCcEEEEeCCCCc-eEEEeeccCCCCcEEEEEccC-CCCeEEeeeccc
Q 022303          239 LSLSED--QLIISGSSLGSIAISGLSSDQ-RVATLRSTDCTGHIICLMYPQ-FLHMLFFLCFLP  298 (299)
Q Consensus       239 ~~~~~~--~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~-~g~~l~s~s~~~  298 (299)
                      ++-+|.  +.+++|+.||.+-+||.++.. +...++.|..  +|+.+-|+| ++..|++++.-+
T Consensus       185 l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~--~i~eV~FHpk~p~~Lft~sedG  246 (319)
T KOG4714|consen  185 LCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKA--EIWEVHFHPKNPEHLFTCSEDG  246 (319)
T ss_pred             hhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhh--hhhheeccCCCchheeEecCCC
Confidence            999987  688889999999999999864 3455667777  999999999 677888887543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.28  E-value=1.1e-05  Score=65.73  Aligned_cols=99  Identities=15%  Similarity=0.090  Sum_probs=65.6

Q ss_pred             eCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceee---eeccCCccceeeeeccCC
Q 022303          129 VGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSV---FPSREGTFMKGLCMRYFD  203 (299)
Q Consensus       129 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~  203 (299)
                      +....+.+|....+.+...+ +|-..+. ++++||+++|+ +..|..|++-.....-.+   .-+|..-+. .+++.+ +
T Consensus       129 gD~~~~di~s~~~~~~~~~l-GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS-~isl~~-~  205 (390)
T KOG3914|consen  129 GDVYSFDILSADSGRCEPIL-GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVS-TISLTD-N  205 (390)
T ss_pred             CCceeeeeecccccCcchhh-hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhee-eeeecc-C
Confidence            44455666665554443333 4544444 99999999999 999999999877654322   223333322 233332 2


Q ss_pred             CeEEEecCCCcEEEEEcCCcceeeecc
Q 022303          204 PEAVVGCEDGTARVFDMYSRKCSQIIR  230 (299)
Q Consensus       204 ~~l~s~~~d~~i~iwd~~~~~~~~~~~  230 (299)
                      ..|++++.|+++++||+.+|+.+.++.
T Consensus       206 ~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  206 YLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             ceeeecCCCCcEEEEecccCCcccccc
Confidence            238999999999999999999887664

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.27  E-value=0.00011  Score=63.27  Aligned_cols=129  Identities=18%  Similarity=0.191  Sum_probs=83.3

Q ss_pred             cEEEEecCCc--eeEEEecCCCceeEEEEecCCCE-EE-----EEcCC----eEEEEecCCce----eeeeccCCcccee
Q 022303          133 VMRLWSLEGY--KCVEEYSLPNAASLVDFDFDESK-IV-----GLIGT----RICIWRRNGLR----SVFPSREGTFMKG  196 (299)
Q Consensus       133 ~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~-l~-----~~~d~----~i~v~d~~~~~----~~~~~~~~~~~~~  196 (299)
                      .+.++.+..+  +.+..++....++.+.|+....+ +.     .+.+|    .-.+|++...+    .+....-.....+
T Consensus       185 Nl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~  264 (545)
T PF11768_consen  185 NLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVIC  264 (545)
T ss_pred             cEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceE
Confidence            3444444332  33444555556677777764333 22     23344    34567766543    1112222222335


Q ss_pred             eeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 022303          197 LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS  263 (299)
Q Consensus       197 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~  263 (299)
                      .+.++....++.|..||.|.+||...+.....  ...-.++.++|+|+ .++++|+..|.+.+||+.-
T Consensus       265 ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  265 CARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            68888899999999999999999986643322  33456889999999 8999999999999999864

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.26  E-value=0.0014  Score=53.22  Aligned_cols=181  Identities=12%  Similarity=0.066  Sum_probs=113.4

Q ss_pred             eEEEe-cCC-EEEEEeC-CCcEEEEecCC-cee---EEEecCCCc----------eeEEEEecCCCEEEEE--cCCeEEE
Q 022303          116 DQCRM-KRG-LILTGVG-DKVMRLWSLEG-YKC---VEEYSLPNA----------ASLVDFDFDESKIVGL--IGTRICI  176 (299)
Q Consensus       116 ~~~~~-~~~-~l~s~~~-dg~i~iwd~~~-~~~---~~~~~~~~~----------~~~~~~~~~~~~l~~~--~d~~i~v  176 (299)
                      +.+++ +++ +++++.. -|.|.++-++. |..   +..+.+...          +-...+.|++++|++.  .-..|.+
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~  171 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL  171 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence            45666 455 7777765 47899998864 432   223332211          3347889999998833  3458999


Q ss_pred             EecCCcee----eeeccCCccceeeeeccCCCeEEEec-CCCcEEEEEcCCc--c--eeeecc------ccCCceeEEEe
Q 022303          177 WRRNGLRS----VFPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSR--K--CSQIIR------MHCAPVTSLSL  241 (299)
Q Consensus       177 ~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~--~--~~~~~~------~~~~~i~~~~~  241 (299)
                      |++..+..    ......+....-+.|+|+++..+... -+++|.+|.....  +  .++.+.      ........|.+
T Consensus       172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi  251 (346)
T COG2706         172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI  251 (346)
T ss_pred             EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence            99986541    12223344444578999999955544 4889999988763  2  222222      22345678888


Q ss_pred             CCC-CeEEEEeC-CCcEEEEeCCCC-ceEEEeec-cCCCCcEEEEEccCCCCeEEeeec
Q 022303          242 SED-QLIISGSS-LGSIAISGLSSD-QRVATLRS-TDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       242 ~~~-~~l~~~~~-dg~i~iwd~~~~-~~~~~~~~-~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +++ ++|.++.. ..+|.+|.+... ..+..+.. ..+....+...|+|+|++|+++..
T Consensus       252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q  310 (346)
T COG2706         252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ  310 (346)
T ss_pred             CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence            999 77766653 457888877542 22332221 112115789999999999998764

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=0.00012  Score=64.89  Aligned_cols=133  Identities=17%  Similarity=0.214  Sum_probs=95.8

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecC-----CCEEE-EEcCCeEEEEecC---Cce-eeeeccCCcc
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFD-----ESKIV-GLIGTRICIWRRN---GLR-SVFPSREGTF  193 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~-~~~d~~i~v~d~~---~~~-~~~~~~~~~~  193 (299)
                      +++||+.||.|.|-.+-+.+...++..+.+..+++++|+     .+.++ |+.-| +.++.-+   +.. .......|. 
T Consensus        85 y~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~-  162 (846)
T KOG2066|consen   85 YVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP-  162 (846)
T ss_pred             eEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc-
Confidence            999999999999999999999988988888889999997     23455 66666 7776543   111 223333333 


Q ss_pred             ceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCC------ceeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022303          194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA------PVTSLSLSEDQLIISGSSLGSIAISGLS  262 (299)
Q Consensus       194 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~i~~~~~~~~~~l~~~~~dg~i~iwd~~  262 (299)
                        +.++...+..++-++++| |++||..+++.+..+.....      ....+.|.++..|+.|-.| +|+|..++
T Consensus       163 --I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  163 --IHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIK  233 (846)
T ss_pred             --eEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence              567777788888887665 89999998887766653222      2355777777667776654 58888887

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.23  E-value=5.9e-06  Score=72.39  Aligned_cols=116  Identities=17%  Similarity=0.261  Sum_probs=80.4

Q ss_pred             EEeeccccCeeEEEe-cC--CEEEEEeCCCcEEEEecCCce-eEEEec-CCCceeEEEEecCC-CEEEEEcCCeEEEEec
Q 022303          106 DQWKAHSVGVDQCRM-KR--GLILTGVGDKVMRLWSLEGYK-CVEEYS-LPNAASLVDFDFDE-SKIVGLIGTRICIWRR  179 (299)
Q Consensus       106 ~~~~~h~~~i~~~~~-~~--~~l~s~~~dg~i~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~~-~~l~~~~d~~i~v~d~  179 (299)
                      ..+.+|...|+.+.| +.  ..+++++.|-.+..||+.+.. ++..+. .+.....+.|+-.. ..++.+....|.+||.
T Consensus       108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~  187 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL  187 (1081)
T ss_pred             EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence            456899999999999 32  299999999999999998754 344333 45555668887644 4455777889999999


Q ss_pred             CCceeeeeccCCccceeeeeccC---CCeEEEecCCCcEEEEEcC
Q 022303          180 NGLRSVFPSREGTFMKGLCMRYF---DPEAVVGCEDGTARVFDMY  221 (299)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~d~~i~iwd~~  221 (299)
                      +.+...+....+++..+-.+.++   ...+.+.+.|++|+.||..
T Consensus       188 r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~  232 (1081)
T KOG0309|consen  188 RKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS  232 (1081)
T ss_pred             cCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence            97754443333444433333333   2237788888888888864

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.21  E-value=5e-06  Score=66.48  Aligned_cols=119  Identities=9%  Similarity=0.093  Sum_probs=84.8

Q ss_pred             ccCeeEEEe--cCCEEEEEeCCCcEEEEecCCc-----eeEEEecCCCceeEEEEec-CCCEEE-EEcCCeEEEEecCCc
Q 022303          112 SVGVDQCRM--KRGLILTGVGDKVMRLWSLEGY-----KCVEEYSLPNAASLVDFDF-DESKIV-GLIGTRICIWRRNGL  182 (299)
Q Consensus       112 ~~~i~~~~~--~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~l~-~~~d~~i~v~d~~~~  182 (299)
                      .+.|.++.|  .+++++.|..+|.|...|++..     .+...+.++..+.++..-. ++..|. .+.+|+|++||.+--
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~  331 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT  331 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence            455666667  3559999999999999999853     4666666666666655433 555655 888999999999854


Q ss_pred             e-----eeeeccCCccce-eeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc
Q 022303          183 R-----SVFPSREGTFMK-GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR  230 (299)
Q Consensus       183 ~-----~~~~~~~~~~~~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  230 (299)
                      +     ..+++|-+.... -..+.+....++++++|...+||.++.+..+.++.
T Consensus       332 K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  332 KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence            3     233444332221 13455556668999999999999999999988875

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.21  E-value=8.9e-06  Score=71.31  Aligned_cols=165  Identities=15%  Similarity=0.168  Sum_probs=111.5

Q ss_pred             EEEEEeCCCcEEEEecCCc---eeEEEecCCCceeE-EEEecCCCE-EE-EEcCCeEEEEecCCceeeeeccCC--ccce
Q 022303          124 LILTGVGDKVMRLWSLEGY---KCVEEYSLPNAASL-VDFDFDESK-IV-GLIGTRICIWRRNGLRSVFPSREG--TFMK  195 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~-~~~~~~~~~-l~-~~~d~~i~v~d~~~~~~~~~~~~~--~~~~  195 (299)
                      +-+.......-.+|++...   .....+.+|...+. +.|+|+..- ++ ++.|-.+..||++.+...+.....  ....
T Consensus        83 ~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~as  162 (1081)
T KOG0309|consen   83 YWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAAS  162 (1081)
T ss_pred             eeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCc
Confidence            3333333344457886532   22234446665555 999887765 45 889999999999988644332211  1122


Q ss_pred             eeeeccCCCeEEEecCCCcEEEEEcCCcc-eeeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCceEEEeec
Q 022303          196 GLCMRYFDPEAVVGCEDGTARVFDMYSRK-CSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRS  272 (299)
Q Consensus       196 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~  272 (299)
                      .+.|++..+.+.+.+..+.|.+||.+.|. ++..+++|...|+.++|..-  ..+.+++.|++|+.||............
T Consensus       163 qVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v  242 (1081)
T KOG0309|consen  163 QVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV  242 (1081)
T ss_pred             eeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec
Confidence            46899999998888888899999998764 56778888899999999865  6789999999999999875432222211


Q ss_pred             cCCCCcEEEEEccCCCC
Q 022303          273 TDCTGHIICLMYPQFLH  289 (299)
Q Consensus       273 ~~~~~~i~~~~~s~~g~  289 (299)
                      .... +|+.-.+.|-|+
T Consensus       243 tt~~-piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  243 TTNF-PIWRGRYLPFGE  258 (1081)
T ss_pred             cccC-cceeccccccCc
Confidence            2222 677777777554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=1.4e-05  Score=66.08  Aligned_cols=184  Identities=10%  Similarity=0.018  Sum_probs=119.4

Q ss_pred             ccccCeeEEEe-cCCEEEEEeCCCcEEEEecCC--c-eeEEEecCCCceeE-EEEecCCCEEE-EEc-CCeEEEEecCCc
Q 022303          110 AHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEG--Y-KCVEEYSLPNAASL-VDFDFDESKIV-GLI-GTRICIWRRNGL  182 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~--~-~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~-d~~i~v~d~~~~  182 (299)
                      -|.+.|+.+.. ..+++++++.||.++.|.-..  + +.+..+..|..++. ++.+-++.++. .+. |+.++++|+.+-
T Consensus         7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            48888888776 445999999999999997543  2 23344556655555 77788887777 455 899999999875


Q ss_pred             eeeeeccCCccceeeeeccCCC----eE-EEecCCCcEEEEEcCCcc--eeeeccccCCceeEEEeCCC-CeEEEEeCCC
Q 022303          183 RSVFPSREGTFMKGLCMRYFDP----EA-VVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSED-QLIISGSSLG  254 (299)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~----~l-~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg  254 (299)
                      ..+-...........+|.....    .+ ++.-.++.+.++|-....  ....-.-|..+|..+.+.+- ..+++....|
T Consensus        87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g  166 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG  166 (558)
T ss_pred             chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence            4221110001111123333322    13 344568899999977543  22333378999999999988 8888888899


Q ss_pred             cEEEEeCCC------CceEEEeeccCC-------CCcEEEEEccCCCCeEEe
Q 022303          255 SIAISGLSS------DQRVATLRSTDC-------TGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       255 ~i~iwd~~~------~~~~~~~~~~~~-------~~~i~~~~~s~~g~~l~s  293 (299)
                      -|.-|....      .+....++....       .+...++.|+|+|..+.+
T Consensus       167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qist  218 (558)
T KOG0882|consen  167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIST  218 (558)
T ss_pred             eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccc
Confidence            999999862      222222221111       126789999999987764

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.14  E-value=0.00031  Score=61.93  Aligned_cols=168  Identities=11%  Similarity=-0.069  Sum_probs=108.0

Q ss_pred             eCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EE--------------------------------------
Q 022303          129 VGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL--------------------------------------  169 (299)
Q Consensus       129 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~--------------------------------------  169 (299)
                      -..+.+.+.|.++.+...++......-.+++++++++++ .+                                      
T Consensus       212 ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~  291 (635)
T PRK02888        212 KYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFK  291 (635)
T ss_pred             ceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEE
Confidence            344566777777777666666555444577777777766 32                                      


Q ss_pred             --cCCeEEEEecCC-----ceeeeeccCCccceeeeeccCCCeEE-EecCCCcEEEEEcCCcce------------eeec
Q 022303          170 --IGTRICIWRRNG-----LRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKC------------SQII  229 (299)
Q Consensus       170 --~d~~i~v~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~------------~~~~  229 (299)
                        .++.|.+.|..+     ...+.....+.....+.++|++.+++ ++..+..+.++|+.+.+.            +.+.
T Consensus       292 ~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev  371 (635)
T PRK02888        292 TIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP  371 (635)
T ss_pred             EECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence              124577777776     33444444455555678999999955 555699999999987542            3333


Q ss_pred             cccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC----------CceEEEeeccCCCCcEEE---EEccCCCCeEEeee
Q 022303          230 RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS----------DQRVATLRSTDCTGHIIC---LMYPQFLHMLFFLC  295 (299)
Q Consensus       230 ~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~i~~---~~~s~~g~~l~s~s  295 (299)
                      .. .......+|.++ ..+.+-.-|..|..|++.+          ...+..+..|...+.+..   =.-.|+|++|++..
T Consensus       372 ev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        372 EL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             cc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            33 223456678877 7777788899999999876          345555655554111111   12478999999876


Q ss_pred             cc
Q 022303          296 FL  297 (299)
Q Consensus       296 ~~  297 (299)
                      -+
T Consensus       451 k~  452 (635)
T PRK02888        451 KF  452 (635)
T ss_pred             cc
Confidence            54

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.14  E-value=0.0023  Score=50.56  Aligned_cols=181  Identities=11%  Similarity=0.003  Sum_probs=114.3

Q ss_pred             eEEEe-cCC-EEEEEeCCC--cEEEEecCCceeEEEecCCCceeE--EEEecCCCEEEEEcCCeEEEEecCCceeeeecc
Q 022303          116 DQCRM-KRG-LILTGVGDK--VMRLWSLEGYKCVEEYSLPNAASL--VDFDFDESKIVGLIGTRICIWRRNGLRSVFPSR  189 (299)
Q Consensus       116 ~~~~~-~~~-~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~  189 (299)
                      ..+.| .++ ++-+.+.-|  .|+.+|+.+++.......+.....  ++...+.-+.+.=.++...+||..+-+.+-.-.
T Consensus        48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~  127 (264)
T PF05096_consen   48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFP  127 (264)
T ss_dssp             EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEe
Confidence            34777 777 666666666  799999999998888877765554  555433222227778999999998765332211


Q ss_pred             CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc-----CCceeEEEeCCCCeEEEEeCCCcEEEEeCCCC
Q 022303          190 EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH-----CAPVTSLSLSEDQLIISGSSLGSIAISGLSSD  264 (299)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~  264 (299)
                      -...  ...+..++..|+.......+.++|..+.+....+...     -..++.+.+-.+...|-.-....|...|..+|
T Consensus       128 y~~E--GWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG  205 (264)
T PF05096_consen  128 YPGE--GWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETG  205 (264)
T ss_dssp             -SSS----EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-
T ss_pred             cCCc--ceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCC
Confidence            1111  2345577888888888889999999988777666522     23466777766566676777788999999999


Q ss_pred             ceEEEeecc-----------C--CCCcEEEEEccCC-CCeEEeeeccc
Q 022303          265 QRVATLRST-----------D--CTGHIICLMYPQF-LHMLFFLCFLP  298 (299)
Q Consensus       265 ~~~~~~~~~-----------~--~~~~i~~~~~s~~-g~~l~s~s~~~  298 (299)
                      +.+..+...           .  ...-.+.+|++|. ++++++|=.+|
T Consensus       206 ~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp  253 (264)
T PF05096_consen  206 KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWP  253 (264)
T ss_dssp             BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-S
T ss_pred             eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCC
Confidence            988766210           0  0126899999875 55667776554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.13  E-value=0.00025  Score=60.88  Aligned_cols=148  Identities=10%  Similarity=-0.030  Sum_probs=97.2

Q ss_pred             CCEEEEEeCCCcEEEEecCCceeEEEecCCCce--------eEEEEec---CCCEEEEEcCCeEEEEecCCceeeeeccC
Q 022303          122 RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA--------SLVDFDF---DESKIVGLIGTRICIWRRNGLRSVFPSRE  190 (299)
Q Consensus       122 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~---~~~~l~~~~d~~i~v~d~~~~~~~~~~~~  190 (299)
                      ++.++.++.+|.+...|..+|+.+...+...+.        ..+..+|   ++..++++.+|.+..+|..+++.......
T Consensus       205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~  284 (394)
T PRK11138        205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY  284 (394)
T ss_pred             CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC
Confidence            345677788899999999999877665422110        0011111   33334488899999999998876655433


Q ss_pred             CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccC-CceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEE
Q 022303          191 GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-APVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVAT  269 (299)
Q Consensus       191 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  269 (299)
                      +...   .....+..++.++.++.+..+|..+++.+....... ....+.... +..++.++.||.|.+.|..+|+.+.+
T Consensus       285 ~~~~---~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g~l~v~~~~G~l~~ld~~tG~~~~~  360 (394)
T PRK11138        285 GSVN---DFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NGYLVVGDSEGYLHWINREDGRFVAQ  360 (394)
T ss_pred             CCcc---CcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-CCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            2211   223346678888899999999999998776543211 112222222 35788889999999999999998887


Q ss_pred             eecc
Q 022303          270 LRST  273 (299)
Q Consensus       270 ~~~~  273 (299)
                      .+..
T Consensus       361 ~~~~  364 (394)
T PRK11138        361 QKVD  364 (394)
T ss_pred             EEcC
Confidence            7654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.11  E-value=6.1e-05  Score=59.67  Aligned_cols=183  Identities=11%  Similarity=0.170  Sum_probs=111.9

Q ss_pred             cCeeEEEe--cCC--EEEEEeCCCcEEEEecCCce-------------------------------------eE-----E
Q 022303          113 VGVDQCRM--KRG--LILTGVGDKVMRLWSLEGYK-------------------------------------CV-----E  146 (299)
Q Consensus       113 ~~i~~~~~--~~~--~l~s~~~dg~i~iwd~~~~~-------------------------------------~~-----~  146 (299)
                      ..|..+.|  +.+  .++..+.|.+|++|.+....                                     .+     +
T Consensus        86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r  165 (460)
T COG5170          86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR  165 (460)
T ss_pred             HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence            45777877  333  77788899999999875320                                     00     0


Q ss_pred             Ee-cCCCceeE-EEEecCCCEEEEEcCCeEEEEecCCceeeeec---cCCc------cceeeeeccCCCe-EEEecCCCc
Q 022303          147 EY-SLPNAASL-VDFDFDESKIVGLIGTRICIWRRNGLRSVFPS---REGT------FMKGLCMRYFDPE-AVVGCEDGT  214 (299)
Q Consensus       147 ~~-~~~~~~~~-~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~---~~~~------~~~~~~~~~~~~~-l~s~~~d~~  214 (299)
                      .+ ..|...+. +.+..|...++.+.|-.|.+|++.-....+..   ....      +....-++|.... +.-.+..|.
T Consensus       166 vyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~  245 (460)
T COG5170         166 VYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE  245 (460)
T ss_pred             eccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence            00 11222232 77777777788888889999998754322211   1100      0111234444333 555677899


Q ss_pred             EEEEEcCCcce------eee----------ccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC-ceEEEeeccCCC
Q 022303          215 ARVFDMYSRKC------SQI----------IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD-QRVATLRSTDCT  276 (299)
Q Consensus       215 i~iwd~~~~~~------~~~----------~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~  276 (299)
                      |++-|++....      +..          +..-...|..+.|+++ +++++-+. -+++|||++.. .++.++..|...
T Consensus       246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l  324 (460)
T COG5170         246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDL  324 (460)
T ss_pred             EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHH
Confidence            99999984321      111          1122356889999999 77777654 57999999864 567777444320


Q ss_pred             ----------CcE---EEEEccCCCCeEEeeec
Q 022303          277 ----------GHI---ICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       277 ----------~~i---~~~~~s~~g~~l~s~s~  296 (299)
                                ..|   ..+.||-|.+.+++||.
T Consensus       325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy  357 (460)
T COG5170         325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGSY  357 (460)
T ss_pred             HHHHHhhhhccceeeeEEEEecCCccccccccc
Confidence                      123   45788888888888875

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.07  E-value=0.00011  Score=62.57  Aligned_cols=133  Identities=11%  Similarity=0.058  Sum_probs=92.7

Q ss_pred             EEEEecCCCEEEEEcCCeEEEEecCCceee-eeccCCccceeeeeccCCCeEEEecC-----------CCcEEEEEcCCc
Q 022303          156 LVDFDFDESKIVGLIGTRICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCE-----------DGTARVFDMYSR  223 (299)
Q Consensus       156 ~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~-----------d~~i~iwd~~~~  223 (299)
                      .+.|||-|.+|+......|.+|--.+-..+ ...|.+.  .-+.++|...+|++-+.           ...+.|||+.+|
T Consensus       215 yv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp~V--q~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG  292 (698)
T KOG2314|consen  215 YVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHPGV--QFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG  292 (698)
T ss_pred             eEEecCCceEEEEEeccceeeecCccHHHHHhccCCCc--eeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence            499999999999888888999976554322 1223322  23589999999887432           256999999999


Q ss_pred             ceeeecccc--CCce-eEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022303          224 KCSQIIRMH--CAPV-TSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       224 ~~~~~~~~~--~~~i-~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      ...+.|...  ...+ .-..||-| +++|.-.. .+|.||+..+-.++..-...-.  .|....|+|.+..||-
T Consensus       293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~--gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKIS--GIRDFSWSPTSNLLAY  363 (698)
T ss_pred             chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCc--cccCcccCCCcceEEE
Confidence            998888642  2222 34678877 88877766 5699999877544432222223  6899999999888873

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.05  E-value=0.0017  Score=51.18  Aligned_cols=158  Identities=13%  Similarity=0.043  Sum_probs=91.4

Q ss_pred             eEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCC-------CceeE-EEEecCC-------CEEEEEcCCeEEEEe
Q 022303          116 DQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-------NAASL-VDFDFDE-------SKIVGLIGTRICIWR  178 (299)
Q Consensus       116 ~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~-~~~~~~~-------~~l~~~~d~~i~v~d  178 (299)
                      ..++| +|+ +||.+...|+|+++|+.. ..+..+...       ...++ +.|-+..       .+++...+|.++-|-
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            34778 666 899999999999999874 333333321       12333 5553322       334577777777666


Q ss_pred             cCC--ce-----ee--eeccCCccceeeeeccCCCeEEEecCC-C----------cEEEEEcCCccee------------
Q 022303          179 RNG--LR-----SV--FPSREGTFMKGLCMRYFDPEAVVGCED-G----------TARVFDMYSRKCS------------  226 (299)
Q Consensus       179 ~~~--~~-----~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d-~----------~i~iwd~~~~~~~------------  226 (299)
                      +..  .+     ..  +..+-........+++....|+.|+.. .          -+..|.+-++.+-            
T Consensus       126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~  205 (282)
T PF15492_consen  126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT  205 (282)
T ss_pred             EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc
Confidence            532  11     11  111111112233555555555554421 1          1445543221100            


Q ss_pred             -----------ee---c---cccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccC
Q 022303          227 -----------QI---I---RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTD  274 (299)
Q Consensus       227 -----------~~---~---~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  274 (299)
                                 ..   +   ......|..|..+|| +.||+...+|.|.+|++.+-++...+..++
T Consensus       206 ~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e  271 (282)
T PF15492_consen  206 ASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE  271 (282)
T ss_pred             ccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence                       00   0   123567899999999 999999999999999999888777776554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.04  E-value=0.0016  Score=61.62  Aligned_cols=174  Identities=10%  Similarity=0.057  Sum_probs=110.1

Q ss_pred             cccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEE------------------------ec---------------
Q 022303          111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEE------------------------YS---------------  149 (299)
Q Consensus       111 h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~------------------------~~---------------  149 (299)
                      -...|.+++| ||+ +|+..+.++++.+.+- +.+++..                        |+               
T Consensus       119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  119 VDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT  197 (928)
T ss_pred             EcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence            4567888999 666 8888888888877652 1111111                        10               


Q ss_pred             ----------CCCceeEEEEecCCCEEE-EEc---C---CeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecC-
Q 022303          150 ----------LPNAASLVDFDFDESKIV-GLI---G---TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-  211 (299)
Q Consensus       150 ----------~~~~~~~~~~~~~~~~l~-~~~---d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-  211 (299)
                                ..+..+.++|-.||.+++ .+.   .   ..++||+-++...............++|.|.|..+++.-. 
T Consensus       198 ~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~  277 (928)
T PF04762_consen  198 VPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRL  277 (928)
T ss_pred             CCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEc
Confidence                      112345588999999988 443   2   4899999875532222233333346799999998877543 


Q ss_pred             --CCcEEEEEcCCcceeeecc----ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc--eEEEeeccCCCCcEEEE
Q 022303          212 --DGTARVFDMYSRKCSQIIR----MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ--RVATLRSTDCTGHIICL  282 (299)
Q Consensus       212 --d~~i~iwd~~~~~~~~~~~----~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~i~~~  282 (299)
                        ...|.+|. ++|-...+|.    .....|..+.|+++ ..||..-.|. |++|-..+..  +-+.+...... .+..+
T Consensus       278 ~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~-~~~~~  354 (928)
T PF04762_consen  278 PDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSE-SVNFV  354 (928)
T ss_pred             CCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCC-CCCce
Confidence              34466665 3454444443    34567999999999 8888877655 9999987754  23444433322 45568


Q ss_pred             EccCCC
Q 022303          283 MYPQFL  288 (299)
Q Consensus       283 ~~s~~g  288 (299)
                      .|+|..
T Consensus       355 ~Wdpe~  360 (928)
T PF04762_consen  355 KWDPEK  360 (928)
T ss_pred             EECCCC
Confidence            999854

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.03  E-value=0.00031  Score=60.33  Aligned_cols=135  Identities=10%  Similarity=0.082  Sum_probs=89.2

Q ss_pred             cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccC--Cccceee
Q 022303          121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSRE--GTFMKGL  197 (299)
Q Consensus       121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~~  197 (299)
                      .++.++.++.+|.+...|..+|+.+........ ..+.  ..+..++ ++.+|.+..+|..+++.......  .....  
T Consensus       255 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~--  329 (394)
T PRK11138        255 VGGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLT--  329 (394)
T ss_pred             ECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCccc--
Confidence            355777888899999999999988766543221 1122  2344454 88899999999988865543321  11110  


Q ss_pred             eeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeE-EEeCCCCeEEEEeCCCcEEEEeC
Q 022303          198 CMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTS-LSLSEDQLIISGSSLGSIAISGL  261 (299)
Q Consensus       198 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~-~~~~~~~~l~~~~~dg~i~iwd~  261 (299)
                      .-...+..++.++.+|.+...|..+|+.+.........+.+ ..+ .+..|+.++.||.|+.+++
T Consensus       330 sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        330 APVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECCEEEEEeCCceEEEEeC
Confidence            11123567888999999999999999988776543332321 222 2357888899999988764

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.99  E-value=0.00014  Score=64.43  Aligned_cols=140  Identities=9%  Similarity=0.080  Sum_probs=106.5

Q ss_pred             CeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEEEEcCCeEEEEecCCceeeeeccCC
Q 022303          114 GVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREG  191 (299)
Q Consensus       114 ~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~  191 (299)
                      .-.++.| +.|+++-|+. ..|.+-|..+.+.++.++.|...+. +.|.|......                        
T Consensus        17 N~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~------------------------   71 (1062)
T KOG1912|consen   17 NRNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRD------------------------   71 (1062)
T ss_pred             cccccccCccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchh------------------------
Confidence            3556788 4557777765 5677889999999999998876555 88877431110                        


Q ss_pred             ccceeeeecc--CCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-----CeEEEEeCCCcEEEEeCCCC
Q 022303          192 TFMKGLCMRY--FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-----QLIISGSSLGSIAISGLSSD  264 (299)
Q Consensus       192 ~~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~  264 (299)
                            -+++  ....++++.-.|.|.+||...+..+..+..+..++..++|-+.     .+|++-....+|.+|+..+|
T Consensus        72 ------llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG  145 (1062)
T KOG1912|consen   72 ------LLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG  145 (1062)
T ss_pred             ------ccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC
Confidence                  1111  1233788999999999999999988889888999999999752     46777788899999999999


Q ss_pred             ceEEEeeccCCCCcEEEEEccC
Q 022303          265 QRVATLRSTDCTGHIICLMYPQ  286 (299)
Q Consensus       265 ~~~~~~~~~~~~~~i~~~~~s~  286 (299)
                      +.+......+.  ...++.++|
T Consensus       146 ~k~Wk~~ys~~--iLs~f~~DP  165 (1062)
T KOG1912|consen  146 EKFWKYDYSHE--ILSCFRVDP  165 (1062)
T ss_pred             ceeeccccCCc--ceeeeeeCC
Confidence            99888877666  677788877

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.99  E-value=0.00071  Score=52.58  Aligned_cols=123  Identities=12%  Similarity=0.041  Sum_probs=86.2

Q ss_pred             cCCC-EEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeE
Q 022303          161 FDES-KIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTS  238 (299)
Q Consensus       161 ~~~~-~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~  238 (299)
                      ++.+ +++ ++..+.+.--|..++...++..-+.....-++. -++.++.|...|.+++.+..+|+....+..-...=..
T Consensus        20 ~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~   98 (354)
T KOG4649|consen   20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR   98 (354)
T ss_pred             cCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence            4443 444 888899999999888766655443322121222 4666899999999999999999888887643332233


Q ss_pred             EEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccC
Q 022303          239 LSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQ  286 (299)
Q Consensus       239 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  286 (299)
                      ....++ ..+..|+.|+..+..|.++..++...+....  ...+-+..|
T Consensus        99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~  145 (354)
T KOG4649|consen   99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAP  145 (354)
T ss_pred             eEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecC
Confidence            445677 8999999999999999999999888765544  333334445

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.95  E-value=0.00011  Score=63.16  Aligned_cols=88  Identities=20%  Similarity=0.206  Sum_probs=66.8

Q ss_pred             EEEecCCcee----EEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEe
Q 022303          135 RLWSLEGYKC----VEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVG  209 (299)
Q Consensus       135 ~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  209 (299)
                      .+|++...+.    +..+..+..+++++++|++..++ |+.||+|.+||...+........ -....++|+|++..+++|
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~-~~P~~iaWHp~gai~~V~  317 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAE-FIPTLIAWHPDGAIFVVG  317 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeec-ccceEEEEcCCCcEEEEE
Confidence            4455544432    33455677888899999999988 99999999999987754433222 333467999999999999


Q ss_pred             cCCCcEEEEEcCCc
Q 022303          210 CEDGTARVFDMYSR  223 (299)
Q Consensus       210 ~~d~~i~iwd~~~~  223 (299)
                      +..|.+.+||+.-.
T Consensus       318 s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  318 SEQGELQCFDMALS  331 (545)
T ss_pred             cCCceEEEEEeecC
Confidence            99999999998643

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.92  E-value=0.0013  Score=44.41  Aligned_cols=90  Identities=16%  Similarity=0.132  Sum_probs=60.2

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCceeeeeccCCccceeeeeccCC
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFD  203 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  203 (299)
                      .|+.|+.|..|++|+-  .+.+..+...+.++.++-...+++.++..+|+|-+|+-....-..+... .......+..++
T Consensus        17 eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiKSK~-~~~~~~~~D~~g   93 (111)
T PF14783_consen   17 ELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIKSKN-QVTSMAFYDING   93 (111)
T ss_pred             eEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeeeccCC-CeEEEEEEcCCC
Confidence            8999999999999964  4677788877778886666665544599999999998754432222211 122222333332


Q ss_pred             ---CeEEEecCCCcEE
Q 022303          204 ---PEAVVGCEDGTAR  216 (299)
Q Consensus       204 ---~~l~s~~~d~~i~  216 (299)
                         +.|++|-.+|.|-
T Consensus        94 dG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   94 DGVPELIVGWSNGKVE  109 (111)
T ss_pred             CCceEEEEEecCCeEE
Confidence               2388888888764

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.91  E-value=0.0004  Score=63.42  Aligned_cols=87  Identities=17%  Similarity=0.142  Sum_probs=61.7

Q ss_pred             EEEecCCCcEEEEEcCCcc--eeee-cc--ccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEe-eccCCCCcE
Q 022303          206 AVVGCEDGTARVFDMYSRK--CSQI-IR--MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATL-RSTDCTGHI  279 (299)
Q Consensus       206 l~s~~~d~~i~iwd~~~~~--~~~~-~~--~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~i  279 (299)
                      .+.|-.++.+..||+|-..  ++.. ..  .......|++-+.+.+||+|+.+|.||+||- .|..-++. .+-..  +|
T Consensus       545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~--pI  621 (794)
T PF08553_consen  545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGD--PI  621 (794)
T ss_pred             eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCC--Ce
Confidence            4667778888889988532  2211 11  2345577887777789999999999999994 45433333 33344  99


Q ss_pred             EEEEccCCCCeEEeee
Q 022303          280 ICLMYPQFLHMLFFLC  295 (299)
Q Consensus       280 ~~~~~s~~g~~l~s~s  295 (299)
                      .+|..+.||+++++.+
T Consensus       622 ~~iDvt~DGkwilaTc  637 (794)
T PF08553_consen  622 IGIDVTADGKWILATC  637 (794)
T ss_pred             eEEEecCCCcEEEEee
Confidence            9999999999988765

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.90  E-value=0.00017  Score=63.27  Aligned_cols=128  Identities=20%  Similarity=0.233  Sum_probs=91.2

Q ss_pred             EEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccC--CccceeeeeccCCCeEEEecCCCcEEEEEcCCccee-----e
Q 022303          156 LVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSRE--GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS-----Q  227 (299)
Q Consensus       156 ~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~  227 (299)
                      .-+++..+++++ |+.-|.+++|+-.++........  .....+.++++++.++++|+..|.|.++.+..+..-     .
T Consensus        38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t  117 (726)
T KOG3621|consen   38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT  117 (726)
T ss_pred             EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence            367788889998 99999999999888764433332  222335678888888999999999999988763221     1


Q ss_pred             ec-cccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC----ceEEEeeccCCCCcEEEEEcc
Q 022303          228 II-RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD----QRVATLRSTDCTGHIICLMYP  285 (299)
Q Consensus       228 ~~-~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~i~~~~~s  285 (299)
                      .. +.|...|++++|+++ ..+.+|...|+|..-.+...    -..+.+.....  .|..+...
T Consensus       118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds--~IVQlD~~  179 (726)
T KOG3621|consen  118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS--EIVQLDYL  179 (726)
T ss_pred             cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCc--ceEEeecc
Confidence            11 147889999999999 89999999999998888762    11233333333  67666653

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.89  E-value=0.003  Score=50.45  Aligned_cols=132  Identities=14%  Similarity=0.083  Sum_probs=81.7

Q ss_pred             EEEec-CCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc---
Q 022303          157 VDFDF-DESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM---  231 (299)
Q Consensus       157 ~~~~~-~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---  231 (299)
                      ..|.+ ++.+++ -...+.|+.|+..+..........  ...+++...+..++.+...+ +.++|..+++.......   
T Consensus         5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~   81 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDG   81 (246)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETT
T ss_pred             eEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCC
Confidence            56777 444444 445789999999888654333333  22345553345566665544 55669888765433322   


Q ss_pred             --cCCceeEEEeCCC-CeEEEEeCC--------CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          232 --HCAPVTSLSLSED-QLIISGSSL--------GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       232 --~~~~i~~~~~~~~-~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                        .....+.+++.|+ ++.++....        |.|..++.. ++.......- .  ..+.++|+|+++.|+.+.
T Consensus        82 ~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~-~--~pNGi~~s~dg~~lyv~d  152 (246)
T PF08450_consen   82 GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL-G--FPNGIAFSPDGKTLYVAD  152 (246)
T ss_dssp             CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE-S--SEEEEEEETTSSEEEEEE
T ss_pred             CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc-c--cccceEECCcchheeecc
Confidence              3456889999999 777766543        557788876 5544434332 3  689999999999877543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.88  E-value=0.0017  Score=60.70  Aligned_cols=176  Identities=14%  Similarity=0.007  Sum_probs=114.1

Q ss_pred             cCeeEEEe-cC-CEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecC----Cc---
Q 022303          113 VGVDQCRM-KR-GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRN----GL---  182 (299)
Q Consensus       113 ~~i~~~~~-~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~----~~---  182 (299)
                      +.|.++.| .+ +.++.+..+|.|.+-|.++......-...+++..++|+||+..++ .+..+++.+-+-.    ..   
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L  148 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL  148 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence            57888877 33 388888889999999988876655445567788899999999999 8888877764321    00   


Q ss_pred             --------e----------eeeeccC---------------------CccceeeeeccCCCeEEE-----ecCCCcEEEE
Q 022303          183 --------R----------SVFPSRE---------------------GTFMKGLCMRYFDPEAVV-----GCEDGTARVF  218 (299)
Q Consensus       183 --------~----------~~~~~~~---------------------~~~~~~~~~~~~~~~l~s-----~~~d~~i~iw  218 (299)
                              +          ..+.+..                     ++.. .++|.-+++++++     ......|++|
T Consensus       149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~-~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKT-SISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCc-eEEEccCCcEEEEEEEeccCCceeEEEe
Confidence                    0          0111110                     1111 2578888888766     3333789999


Q ss_pred             EcCCcceeeeccccCCceeEEEeCCC-CeEEEEe---CCCcEEEEeCCCCceE----EEeeccCCCCcEEEEEccCCCCe
Q 022303          219 DMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS---SLGSIAISGLSSDQRV----ATLRSTDCTGHIICLMYPQFLHM  290 (299)
Q Consensus       219 d~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~---~dg~i~iwd~~~~~~~----~~~~~~~~~~~i~~~~~s~~g~~  290 (299)
                      |.+ |..-..-....+.=.+++|-|. ..+++-.   +|+.|.+|..+ |..-    -.+.....  ++..++|+.++..
T Consensus       228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~--~ve~L~Wns~sdi  303 (1265)
T KOG1920|consen  228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEK--EVEELAWNSNSDI  303 (1265)
T ss_pred             ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCccccc--chheeeecCCCCc
Confidence            987 4432222222333457888887 6666653   36679999853 4322    22222333  5999999999999


Q ss_pred             EEe
Q 022303          291 LFF  293 (299)
Q Consensus       291 l~s  293 (299)
                      ||.
T Consensus       304 LAv  306 (1265)
T KOG1920|consen  304 LAV  306 (1265)
T ss_pred             eee
Confidence            887

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=0.0021  Score=57.94  Aligned_cols=178  Identities=11%  Similarity=0.150  Sum_probs=109.7

Q ss_pred             CeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecCCCce-eE-EEEecCCCEEE-EEcCC-----eEEEEecCCc---
Q 022303          114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SL-VDFDFDESKIV-GLIGT-----RICIWRRNGL---  182 (299)
Q Consensus       114 ~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~-~~~d~-----~i~v~d~~~~---  182 (299)
                      .|.|+.-..+.++.|+.+|.|.+.+- ..+.++.++..... +. +....+...|+ .+.|+     .+++|+++..   
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            66666666779999999999988763 34555666655433 33 33333435565 44433     6899998643   


Q ss_pred             ---eee----eecc----CCccceeeeeccCCCeEEEecCCCcEEEEEcC---C-cceeeeccccCCceeEEEeCCC-Ce
Q 022303          183 ---RSV----FPSR----EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY---S-RKCSQIIRMHCAPVTSLSLSED-QL  246 (299)
Q Consensus       183 ---~~~----~~~~----~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~-~~~~~~~~~~~~~i~~~~~~~~-~~  246 (299)
                         +..    ...+    ......+++++.+-..++.|-.+|.|..+.-+   . +....-.....++|+.+++..+ ..
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s  185 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS  185 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence               111    1111    12233456777777779999999999988532   1 2222222245789999999876 43


Q ss_pred             -EEEEeCCCcEEEEeCCCCce-EEEeeccCCCCcEEEEEccCCCC-eEEeee
Q 022303          247 -IISGSSLGSIAISGLSSDQR-VATLRSTDCTGHIICLMYPQFLH-MLFFLC  295 (299)
Q Consensus       247 -l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~~g~-~l~s~s  295 (299)
                       ++++. ...|.+|.+....+ +..+..+..  .+.|.+|++... ++++++
T Consensus       186 ~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~--~lnCss~~~~t~qfIca~~  234 (933)
T KOG2114|consen  186 VLFVAT-TEQVMLYSLSGRTPSLKVLDNNGI--SLNCSSFSDGTYQFICAGS  234 (933)
T ss_pred             eEEEEe-cceeEEEEecCCCcceeeeccCCc--cceeeecCCCCccEEEecC
Confidence             33333 45689999873332 333544444  899999987555 555554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.83  E-value=0.0019  Score=55.62  Aligned_cols=159  Identities=16%  Similarity=0.095  Sum_probs=97.3

Q ss_pred             CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCC--eEEEEecCCceeee-eccCCccceeeeeccCCCeE
Q 022303          132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGT--RICIWRRNGLRSVF-PSREGTFMKGLCMRYFDPEA  206 (299)
Q Consensus       132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~--~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~l  206 (299)
                      ..+.++++++++.............-+|+|||+.|+  ...||  .|+++|+.+..... ....+ ....-.|+|++.++
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~g-i~~~Ps~spdG~~i  296 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFG-INTSPSWSPDGSKI  296 (425)
T ss_pred             ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCc-cccCccCCCCCCEE
Confidence            458999999888776666555556689999999988  44555  67777887765222 22222 22234799999995


Q ss_pred             EE-ecCCCc--EEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC-CCc--EEEEeCCCCceEEEeeccCCCCcE
Q 022303          207 VV-GCEDGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LGS--IAISGLSSDQRVATLRSTDCTGHI  279 (299)
Q Consensus       207 ~s-~~~d~~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~i  279 (299)
                      +- .+..|.  |.++|++.+.. ..+......-..-.++|| ++++..+. +|.  |.+.|+.++..++.+....   ..
T Consensus       297 vf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~  372 (425)
T COG0823         297 VFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTY---LN  372 (425)
T ss_pred             EEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccc---cC
Confidence            54 444554  56666665544 333222222226678898 76666654 454  6777776665444443322   34


Q ss_pred             EEEEccCCCCeEEeee
Q 022303          280 ICLMYPQFLHMLFFLC  295 (299)
Q Consensus       280 ~~~~~s~~g~~l~s~s  295 (299)
                      ..-.|.|+|+.+...+
T Consensus       373 e~ps~~~ng~~i~~~s  388 (425)
T COG0823         373 ESPSWAPNGRMIMFSS  388 (425)
T ss_pred             CCCCcCCCCceEEEec
Confidence            4557778887766543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.77  E-value=0.0028  Score=53.78  Aligned_cols=159  Identities=9%  Similarity=0.052  Sum_probs=104.1

Q ss_pred             EeCCCcEEEEecCCceeEEEecC-CCceeEEEEecCCCEEE--EE----------cCCeEEEEecCCceeeee-ccCCcc
Q 022303          128 GVGDKVMRLWSLEGYKCVEEYSL-PNAASLVDFDFDESKIV--GL----------IGTRICIWRRNGLRSVFP-SREGTF  193 (299)
Q Consensus       128 ~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~--~~----------~d~~i~v~d~~~~~~~~~-~~~~~~  193 (299)
                      .+.++.+++|.+..++.+.+-.. .-..+.+.|.+.|++++  .-          .+.++++++++....... ...+.+
T Consensus       198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pV  277 (561)
T COG5354         198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPV  277 (561)
T ss_pred             CCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccc
Confidence            45677888888876655543332 22334578888888754  11          124788888875543333 333443


Q ss_pred             ceeeeeccCCCe--EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCC---CcEEEEeCCCCceE
Q 022303          194 MKGLCMRYFDPE--AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL---GSIAISGLSSDQRV  267 (299)
Q Consensus       194 ~~~~~~~~~~~~--l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d---g~i~iwd~~~~~~~  267 (299)
                      - -.+|.|.+..  +++|-.+..+.++|++.. ....+  ..+.=+.+.|+|. ++++.++-|   |.+-+||......+
T Consensus       278 h-df~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~  353 (561)
T COG5354         278 H-DFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV  353 (561)
T ss_pred             e-eeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence            3 4689889888  455668889999999954 43333  3455677889999 888887764   67999998755443


Q ss_pred             E-EeeccCCCCcEEEEEccCCCCeEEee
Q 022303          268 A-TLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       268 ~-~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      . .+.+..    -+-+.|+|||+++.+.
T Consensus       354 ~~~~~~~n----~s~~~wspd~qF~~~~  377 (561)
T COG5354         354 AGAFNGLN----TSYCDWSPDGQFYDTD  377 (561)
T ss_pred             EEEeecCC----ceEeeccCCceEEEec
Confidence            3 555443    4556899999988765

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.77  E-value=0.0036  Score=56.00  Aligned_cols=188  Identities=14%  Similarity=0.054  Sum_probs=119.7

Q ss_pred             eEEeeccccCeeEEEe-c----------C--C-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEec---CC-CE
Q 022303          105 IDQWKAHSVGVDQCRM-K----------R--G-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDF---DE-SK  165 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~----------~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~---~~-~~  165 (299)
                      ++++.-|...|+.+.| |          .  . +|+++...|.|.+||...+..+..++.+...+. ++|-+   +. ..
T Consensus        48 iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~  127 (1062)
T KOG1912|consen   48 IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDV  127 (1062)
T ss_pred             hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhe
Confidence            5666889999999988 2          1  1 578888899999999999888888887765544 77754   33 23


Q ss_pred             EE-EEcCCeEEEEecCCceeeeeccCCc-cceeeeeccCCCe-EEEecCCCcEEEEEcC-C------cceeeeccccCC-
Q 022303          166 IV-GLIGTRICIWRRNGLRSVFPSREGT-FMKGLCMRYFDPE-AVVGCEDGTARVFDMY-S------RKCSQIIRMHCA-  234 (299)
Q Consensus       166 l~-~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~-~------~~~~~~~~~~~~-  234 (299)
                      ++ -.....+.+|+..+++..++...++ ...++.+.|.+.. +..-+..|.+-+-+.- .      ++..+.-..|.+ 
T Consensus       128 LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl  207 (1062)
T KOG1912|consen  128 LLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDL  207 (1062)
T ss_pred             eEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccch
Confidence            44 6777899999999987666554443 3334566666655 5555556666555432 1      122111111111 


Q ss_pred             ------------------------ceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCC-
Q 022303          235 ------------------------PVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL-  288 (299)
Q Consensus       235 ------------------------~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g-  288 (299)
                                              ....++|+|. +-++-......+.++|++-..++.......+  .+.-+.+-|++ 
T Consensus       208 ~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~  285 (1062)
T KOG1912|consen  208 AHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPR  285 (1062)
T ss_pred             hhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCC
Confidence                                    1122567887 5455555677799999988888888877666  44445555543 


Q ss_pred             -CeEEee
Q 022303          289 -HMLFFL  294 (299)
Q Consensus       289 -~~l~s~  294 (299)
                       ..|++.
T Consensus       286 rd~Lfcl  292 (1062)
T KOG1912|consen  286 RDALFCL  292 (1062)
T ss_pred             cceEEEE
Confidence             445543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.76  E-value=0.0052  Score=53.16  Aligned_cols=131  Identities=8%  Similarity=0.028  Sum_probs=74.6

Q ss_pred             ceeEEEEecCCCEEEEEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc
Q 022303          153 AASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH  232 (299)
Q Consensus       153 ~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  232 (299)
                      .+..+.++|+++.++.+.+|.-.+|..........+.   .. -.+|.. ...+++-..++.|.++.--+.+....+.. 
T Consensus        34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~---g~-~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k~i~~-  107 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGS---GL-SFVWSS-RNRYAVLESSSTIKIYKNFKNEVVKSIKL-  107 (443)
T ss_dssp             --SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE----S-EEEE-T-SSEEEEE-TTS-EEEEETTEE-TT------
T ss_pred             CCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCc---ee-EEEEec-CccEEEEECCCeEEEEEcCccccceEEcC-
Confidence            4567999999999998899999999854433222211   11 236666 44466666688899974333333333432 


Q ss_pred             CCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          233 CAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       233 ~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ...+..+-.  +.+|+..+.+ .|.+||..+++.++++...    +|..+.|+++|.+++..+-
T Consensus       108 ~~~~~~If~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~t~  164 (443)
T PF04053_consen  108 PFSVEKIFG--GNLLGVKSSD-FICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALVTK  164 (443)
T ss_dssp             SS-EEEEE---SSSEEEEETT-EEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE-S
T ss_pred             CcccceEEc--CcEEEEECCC-CEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEEeC
Confidence            122444422  6556555544 8999999999999998644    5899999999999987653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.74  E-value=0.0059  Score=52.11  Aligned_cols=196  Identities=14%  Similarity=0.140  Sum_probs=104.3

Q ss_pred             cCceeeEEeeccccCeeEEEecC-CEEEEEeCCCcEEEEecCCceeEEEecCC---------CceeEEEEe-----cCC-
Q 022303          100 EGRIDIDQWKAHSVGVDQCRMKR-GLILTGVGDKVMRLWSLEGYKCVEEYSLP---------NAASLVDFD-----FDE-  163 (299)
Q Consensus       100 ~g~~~~~~~~~h~~~i~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~-----~~~-  163 (299)
                      .|-.+...++...++|++++.++ |+++.|..+|.+.|.|++....+..-...         ..+..+.|.     .|+ 
T Consensus        74 ~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   74 EGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             cccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            34445666677799999999954 59999999999999999887776653211         123345554     222 


Q ss_pred             --CEEE-EEcCCeEEEEecC-Cc--e--eee----eccCCccceeeeeccCC--------------------CeEEEecC
Q 022303          164 --SKIV-GLIGTRICIWRRN-GL--R--SVF----PSREGTFMKGLCMRYFD--------------------PEAVVGCE  211 (299)
Q Consensus       164 --~~l~-~~~d~~i~v~d~~-~~--~--~~~----~~~~~~~~~~~~~~~~~--------------------~~l~s~~~  211 (299)
                        -.++ |+..|.+.+|.+. ..  .  ..+    ..+.+....+..++.+.                    +.++....
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence              1244 8999999999874 11  1  111    12223333233332110                    11344444


Q ss_pred             CCcEEEEEcCCcceeeeccccCCceeEEEeC-----CC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCC--CcEEEEE
Q 022303          212 DGTARVFDMYSRKCSQIIRMHCAPVTSLSLS-----ED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCT--GHIICLM  283 (299)
Q Consensus       212 d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~-----~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~i~~~~  283 (299)
                      +..++++...+.+.........-....+.+-     .. ..|++-..+|.++++.+..-+.+..++.....  ..+...+
T Consensus       234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss  313 (395)
T PF08596_consen  234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS  313 (395)
T ss_dssp             SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred             ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence            6789999988776654433221222333342     23 56888889999999999998888777664321  1345567


Q ss_pred             ccCCCCeEEeee
Q 022303          284 YPQFLHMLFFLC  295 (299)
Q Consensus       284 ~s~~g~~l~s~s  295 (299)
                      ++++|..++-.+
T Consensus       314 is~~Gdi~~~~g  325 (395)
T PF08596_consen  314 ISRNGDIFYWTG  325 (395)
T ss_dssp             E-TTS-EEEE-S
T ss_pred             ECCCCCEEEEeC
Confidence            788888776543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.74  E-value=0.0013  Score=55.78  Aligned_cols=152  Identities=13%  Similarity=0.072  Sum_probs=97.6

Q ss_pred             CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE---EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEE
Q 022303          132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV---GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVV  208 (299)
Q Consensus       132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  208 (299)
                      .++.++++....+--.....+++...+|.|.++.++   |...-.+.++|+++. ..+..++.... .+.++|...+++.
T Consensus       255 snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rN-T~~fsp~~r~il~  332 (561)
T COG5354         255 SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRN-TIFFSPHERYILF  332 (561)
T ss_pred             ceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccc-cccccCcccEEEE
Confidence            456677666333222223345556699999988765   456789999999988 44444444433 3478888888777


Q ss_pred             ecCC---CcEEEEEcCCcceee-eccccCCceeEEEeCCC-CeEEEEeC------CCcEEEEeCCCCceEEEeeccCCCC
Q 022303          209 GCED---GTARVFDMYSRKCSQ-IIRMHCAPVTSLSLSED-QLIISGSS------LGSIAISGLSSDQRVATLRSTDCTG  277 (299)
Q Consensus       209 ~~~d---~~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~-~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~  277 (299)
                      ++.|   |.+-+||......+. .+.+.  ...-+.|+|| +++.+...      |..|.|||+. |..+.         
T Consensus       333 agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~-g~~~f---------  400 (561)
T COG5354         333 AGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY-GAKVF---------  400 (561)
T ss_pred             ecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEec-Cchhh---------
Confidence            6554   669999987544333 45332  2455679999 77666543      7889999985 33222         


Q ss_pred             cEEEEEccCCCCeEEeeecc
Q 022303          278 HIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       278 ~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ..+.+.|.|.|++..+.|..
T Consensus       401 el~~~~W~p~~~~~ttsSs~  420 (561)
T COG5354         401 ELTNITWDPSGQYVTTSSSC  420 (561)
T ss_pred             hhhhccccCCcccceeeccC
Confidence            35566777777776665543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.69  E-value=0.021  Score=47.68  Aligned_cols=137  Identities=11%  Similarity=0.141  Sum_probs=88.6

Q ss_pred             EEEEEeC----------CCcEEEEecCCc-------eeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCce-ee
Q 022303          124 LILTGVG----------DKVMRLWSLEGY-------KCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR-SV  185 (299)
Q Consensus       124 ~l~s~~~----------dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~-~~  185 (299)
                      +++.|+.          .|.|.++++...       +.+.......++.+++--  +..++++.++.|.+|++.... ..
T Consensus        44 ~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~  121 (321)
T PF03178_consen   44 YIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLL  121 (321)
T ss_dssp             EEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEE
T ss_pred             EEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEeecCEEEEEEccCcccch
Confidence            7776654          289999999884       233444455666664443  445777778999999998776 22


Q ss_pred             eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCC-cceeeecc--ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeC
Q 022303          186 FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS-RKCSQIIR--MHCAPVTSLSLSED-QLIISGSSLGSIAISGL  261 (299)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~  261 (299)
                      ..........+.++...+++++.|+....+.++..+. ...+..+.  .....++++.+-++ +.++.+..+|.+.++..
T Consensus       122 ~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~  201 (321)
T PF03178_consen  122 KKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY  201 (321)
T ss_dssp             EEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred             hhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence            2222212223567777788999999888888875443 22222222  23456888888756 79999999999999987


Q ss_pred             C
Q 022303          262 S  262 (299)
Q Consensus       262 ~  262 (299)
                      .
T Consensus       202 ~  202 (321)
T PF03178_consen  202 N  202 (321)
T ss_dssp             -
T ss_pred             C
Confidence            6

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>smart00320 WD40 WD40 repeats

Probab=97.68  E-value=0.00013  Score=38.83  Aligned_cols=37  Identities=30%  Similarity=0.449  Sum_probs=31.9

Q ss_pred             ceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEe
Q 022303          224 KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG  260 (299)
Q Consensus       224 ~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd  260 (299)
                      +....+..|...|.++.|+++ .++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            445566678889999999998 8999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.67  E-value=0.018  Score=45.76  Aligned_cols=186  Identities=10%  Similarity=0.037  Sum_probs=104.7

Q ss_pred             EeeccccCeeEEEe-cC-C-EEEEEeCCCcEEEEecCCceeEEEecCCC--ceeEEEEecCCCEEEEE-cCCeEEEEecC
Q 022303          107 QWKAHSVGVDQCRM-KR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIVGL-IGTRICIWRRN  180 (299)
Q Consensus       107 ~~~~h~~~i~~~~~-~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~-~d~~i~v~d~~  180 (299)
                      .+.+-...+..++| ++ + ++++....+.|...+. +|+.+..+....  ..-.+++..++.+++.. .++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            34566667999999 54 4 6677777788888886 488888776443  23337777777666655 47899999884


Q ss_pred             Cce-----e---eee--cc--CCccceeeeeccCCCeEEEecCCCcEEEEEcCC---cceeeec--------cccCCcee
Q 022303          181 GLR-----S---VFP--SR--EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS---RKCSQII--------RMHCAPVT  237 (299)
Q Consensus       181 ~~~-----~---~~~--~~--~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~--------~~~~~~i~  237 (299)
                      ...     .   .+.  ..  .+...-.+++.+.++.|+.+-+..-..+|.++.   ...+...        ......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            321     1   111  11  111123578988888877777666666776653   1111111        12334578


Q ss_pred             EEEeCCC--CeEEEEeCCCcEEEEeCCCCceEEEeeccCC-------CCcEEEEEccCCCCeEEee
Q 022303          238 SLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDC-------TGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       238 ~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~i~~~~~s~~g~~l~s~  294 (299)
                      +++++|.  .+++.......|..+| .+|+.+..+.-..+       ....-.|+|+++|++.+++
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            8999987  6777778888999999 57887776654331       0157889999999877764

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.61  E-value=0.0092  Score=46.64  Aligned_cols=132  Identities=11%  Similarity=0.033  Sum_probs=88.3

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeec-cCCccceeeeecc
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS-REGTFMKGLCMRY  201 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~  201 (299)
                      +++.|+..+.++--|..+|+....-......-.-+.- -+++++ |+..|.+++.+.+++.....- ..+.+.....+.+
T Consensus        25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~  103 (354)
T KOG4649|consen   25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDF  103 (354)
T ss_pred             EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcC
Confidence            8999999999999999999987655443322221111 355666 999999999999998533221 1122221235778


Q ss_pred             CCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcE
Q 022303          202 FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSI  256 (299)
Q Consensus       202 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i  256 (299)
                      ++..+..|+.|+..+..|.++..++...+...+...+-+..|. ..|..+...|.+
T Consensus       104 ~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v  159 (354)
T KOG4649|consen  104 DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV  159 (354)
T ss_pred             CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence            8888999999999999999999888887654443444445553 334444444433

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=97.57  E-value=4.3e-05  Score=43.67  Aligned_cols=46  Identities=41%  Similarity=0.577  Sum_probs=38.7

Q ss_pred             hccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHh
Q 022303           24 IESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYC   69 (299)
Q Consensus        24 ~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~   69 (299)
                      |..+|.|+..+|+++++..+..++..+|+.|+.++.+..+|+.++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~   46 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL   46 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence            4578999999999999999999999999999999986689987653

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.00056  Score=59.39  Aligned_cols=89  Identities=17%  Similarity=0.120  Sum_probs=73.0

Q ss_pred             eeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCcee-EEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeecc
Q 022303          196 GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVT-SLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRST  273 (299)
Q Consensus       196 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~-~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  273 (299)
                      .+-|+|.-+.+|.+..+|.+.+..+. .+.+.++..+...++ +++|.|| ++||+|-.||+|++.|+.++..+......
T Consensus        25 ~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s  103 (665)
T KOG4640|consen   25 RIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFS  103 (665)
T ss_pred             EEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccc
Confidence            45788888889999999999999888 788888876777777 9999999 99999999999999999999888773222


Q ss_pred             CCCCcEEEEEccC
Q 022303          274 DCTGHIICLMYPQ  286 (299)
Q Consensus       274 ~~~~~i~~~~~s~  286 (299)
                      ... .|.++-|++
T Consensus       104 ~e~-~is~~~w~~  115 (665)
T KOG4640|consen  104 VET-DISKGIWDR  115 (665)
T ss_pred             ccc-chheeeccc
Confidence            221 688888864

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.0019  Score=58.23  Aligned_cols=134  Identities=19%  Similarity=0.152  Sum_probs=81.9

Q ss_pred             EEEecCCCEEE-EEcCCeEEEEecCCce-eeeeccCCccceeeeeccCCCeEEEecCCC-----cEEEEEcCCc------
Q 022303          157 VDFDFDESKIV-GLIGTRICIWRRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGCEDG-----TARVFDMYSR------  223 (299)
Q Consensus       157 ~~~~~~~~~l~-~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~------  223 (299)
                      -++++++..++ |+.+|.|.+++-.-.. .-++.........+-.......|++.+.|+     .+++||++..      
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            56677777777 9999999998865443 334444333111111111123466666554     4899998642      


Q ss_pred             cee---eecc----ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC--CCceEEEeeccCCCCcEEEEEccCCCCe
Q 022303          224 KCS---QIIR----MHCAPVTSLSLSED-QLIISGSSLGSIAISGLS--SDQRVATLRSTDCTGHIICLMYPQFLHM  290 (299)
Q Consensus       224 ~~~---~~~~----~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~i~~~~~s~~g~~  290 (299)
                      .++   +.+.    ....++.+++++.+ +.+|+|-.+|.|..+.=.  ..+-.+..-.+.+..+|+++++..+++.
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s  185 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS  185 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence            222   1111    23567899999999 999999999999988421  1111122222333339999999988876

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.47  E-value=0.041  Score=44.72  Aligned_cols=169  Identities=13%  Similarity=0.074  Sum_probs=93.0

Q ss_pred             cCC-EEEEE-----eCCCcEEEEecC-CceeEEEecCCCcee-EEEEecCCCEEEEEcCC-------------------e
Q 022303          121 KRG-LILTG-----VGDKVMRLWSLE-GYKCVEEYSLPNAAS-LVDFDFDESKIVGLIGT-------------------R  173 (299)
Q Consensus       121 ~~~-~l~s~-----~~dg~i~iwd~~-~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~d~-------------------~  173 (299)
                      +++ +|++.     ...|.|-|||.. +.+.+.++..+.--- .+.+.||++.|+....|                   +
T Consensus        60 ~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ps  139 (305)
T PF07433_consen   60 PDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPS  139 (305)
T ss_pred             CCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCc
Confidence            666 66654     446899999998 777888888665333 38888999766632222                   3


Q ss_pred             EEEEecCCceeeee--cc-CCcccee--eeeccCCCeEEEecCCCc-------EEEEEcCCcceeeecc-------ccCC
Q 022303          174 ICIWRRNGLRSVFP--SR-EGTFMKG--LCMRYFDPEAVVGCEDGT-------ARVFDMYSRKCSQIIR-------MHCA  234 (299)
Q Consensus       174 i~v~d~~~~~~~~~--~~-~~~~~~~--~~~~~~~~~l~s~~~d~~-------i~iwd~~~~~~~~~~~-------~~~~  234 (299)
                      +...|..+++..-+  .. ..+..++  +++..++.-++..-..|.       +-+++..  +.+..+.       .-.+
T Consensus       140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~  217 (305)
T PF07433_consen  140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNG  217 (305)
T ss_pred             eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCC
Confidence            33333333321111  00 0011111  233333222221111111       2222222  2122221       2356


Q ss_pred             ceeEEEeCCC-CeEEEEe-CCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          235 PVTSLSLSED-QLIISGS-SLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       235 ~i~~~~~~~~-~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      .+-+|+++++ .++++.+ ..+.+.+||..+++.+....-.    .+..++-.+++ ++++++.
T Consensus       218 Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  218 YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEEeCCC
Confidence            8999999998 6665555 5778999999999988776544    46777777776 6666543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=0.057  Score=46.21  Aligned_cols=169  Identities=8%  Similarity=0.014  Sum_probs=116.2

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEc---CCeEEEEecCCceeeeeccCCccceeeee
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI---GTRICIWRRNGLRSVFPSREGTFMKGLCM  199 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~  199 (299)
                      ..++...+..|.+.|..+.+.............++++++++.+. +..   ++.+.+.|..+.........+.....+++
T Consensus        88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~  167 (381)
T COG3391          88 VYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAV  167 (381)
T ss_pred             EEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEE
Confidence            45555557899999988888888777666667799999998776 333   68899999888765444444433345789


Q ss_pred             ccCCCeEEEe-cCCCcEEEEEcCCcceee-e----ccccCCceeEEEeCCC-Ce-EEEEeCC--CcEEEEeCCCCceEEE
Q 022303          200 RYFDPEAVVG-CEDGTARVFDMYSRKCSQ-I----IRMHCAPVTSLSLSED-QL-IISGSSL--GSIAISGLSSDQRVAT  269 (299)
Q Consensus       200 ~~~~~~l~s~-~~d~~i~iwd~~~~~~~~-~----~~~~~~~i~~~~~~~~-~~-l~~~~~d--g~i~iwd~~~~~~~~~  269 (299)
                      .+.+..++.. ..++.+.+.|........ .    . .-......+.++|+ .. .++...+  +.+...|..++.....
T Consensus       168 ~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~  246 (381)
T COG3391         168 DPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT  246 (381)
T ss_pred             CCCCCeEEEEecCCCeEEEEeCCCcceecccccccc-ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence            9999975544 478899999977655553 1    2 22334567888888 53 3333333  6899999988877665


Q ss_pred             eeccCCCCcEEEEEccCCCCeEEee
Q 022303          270 LRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       270 ~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      -...... ....+.++|+|+++.+.
T Consensus       247 ~~~~~~~-~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         247 DLPVGSG-APRGVAVDPAGKAAYVA  270 (381)
T ss_pred             ccccccC-CCCceeECCCCCEEEEE
Confidence            2222221 35667899999888766

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.45  E-value=0.0098  Score=51.29  Aligned_cols=158  Identities=15%  Similarity=0.024  Sum_probs=90.2

Q ss_pred             cEEEEecCCceeEEEecCCC-ceeEEEEecCCCEEE-E-E--cC-CeEEEEecCCceeeeeccCCccceeeeeccCCCeE
Q 022303          133 VMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV-G-L--IG-TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA  206 (299)
Q Consensus       133 ~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~-~--~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l  206 (299)
                      .+.+-|.. +.....+.... ....-.|+|++..++ . .  .. ..++++++.+++.............-.|+|++..+
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l  252 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKL  252 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEE
Confidence            34444433 44444444333 333478899998866 2 2  22 35999999887532222222222245899999884


Q ss_pred             -EEecCCCc--EEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEe-CCCc--EEEEeCCCCceEEEeeccCCCCcE
Q 022303          207 -VVGCEDGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SLGS--IAISGLSSDQRVATLRSTDCTGHI  279 (299)
Q Consensus       207 -~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~i  279 (299)
                       ++...||.  |.+.|+..+.. ..+....+.-..=.|+|| +.++-.+ ..|.  |.++|...+.. ..+.....  .=
T Consensus       253 ~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~--~~  328 (425)
T COG0823         253 AFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGG--GN  328 (425)
T ss_pred             EEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCC--CC
Confidence             45555665  56667776653 334333333345678898 6555554 4554  56666654443 44443333  12


Q ss_pred             EEEEccCCCCeEEeee
Q 022303          280 ICLMYPQFLHMLFFLC  295 (299)
Q Consensus       280 ~~~~~s~~g~~l~s~s  295 (299)
                      ..-.|+|||++++..+
T Consensus       329 ~~p~~SpdG~~i~~~~  344 (425)
T COG0823         329 SNPVWSPDGDKIVFES  344 (425)
T ss_pred             cCccCCCCCCEEEEEe
Confidence            2668999999998765

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.45  E-value=0.0034  Score=53.75  Aligned_cols=137  Identities=17%  Similarity=0.232  Sum_probs=94.8

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCC--------EEEEEcCCeEEEEecCCcee-ee---eccC-
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDES--------KIVGLIGTRICIWRRNGLRS-VF---PSRE-  190 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~d~~i~v~d~~~~~~-~~---~~~~-  190 (299)
                      +|.++.....++--|++.|+.+..+..+..+..+.+.|+.+        .++|-.+..|.-||.+-... .+   +.+. 
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            56667777788888999999999999887755577777654        46788999999999984321 11   1111 


Q ss_pred             -Cccceeeeec-cCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022303          191 -GTFMKGLCMR-YFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS  262 (299)
Q Consensus       191 -~~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~  262 (299)
                       ...... |+. ..+.++++|+.+|.|++||.-.......+.+-..+|..+..+.+ +++++.+ +..|.+.++.
T Consensus       428 ~~k~nFs-c~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  428 STKNNFS-CFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             ccccccc-eeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence             111111 332 33556999999999999997433334456677889999999988 6655544 6667777753

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.44  E-value=0.02  Score=47.08  Aligned_cols=151  Identities=14%  Similarity=0.137  Sum_probs=92.1

Q ss_pred             CEEEEEeCCCcEEEEecC-CceeEEEe----cCC-CceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeeec----cC
Q 022303          123 GLILTGVGDKVMRLWSLE-GYKCVEEY----SLP-NAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS----RE  190 (299)
Q Consensus       123 ~~l~s~~~dg~i~iwd~~-~~~~~~~~----~~~-~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~----~~  190 (299)
                      .-+.+-+.||.+.-..+. .|+.....    ... ++... -++...+..++ .+.+|.|+--|+......+..    ..
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t  227 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT  227 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence            368888999999888887 56654322    122 22222 44555555444 999999999999876522211    10


Q ss_pred             ------C---ccceeeeeccCCCeEEEec---CCC-------cEEEEEcCCcceeeeccccCCceeEEEeCCC-C-eEEE
Q 022303          191 ------G---TFMKGLCMRYFDPEAVVGC---EDG-------TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIIS  249 (299)
Q Consensus       191 ------~---~~~~~~~~~~~~~~l~s~~---~d~-------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~  249 (299)
                            +   .....+++++....|+...   .++       .|-++|+.+++.+..+.. ..++.+|+++.+ + +|.+
T Consensus       228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~  306 (342)
T PF06433_consen  228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYA  306 (342)
T ss_dssp             HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEE
T ss_pred             ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEE
Confidence                  0   0011356666555544321   122       277889999999988853 456889999977 3 5544


Q ss_pred             -EeCCCcEEEEeCCCCceEEEeeccC
Q 022303          250 -GSSLGSIAISGLSSDQRVATLRSTD  274 (299)
Q Consensus       250 -~~~dg~i~iwd~~~~~~~~~~~~~~  274 (299)
                       ...++.|.+||..+|+.++++..-.
T Consensus       307 ~~~~~~~l~v~D~~tGk~~~~~~~lG  332 (342)
T PF06433_consen  307 LSAGDGTLDVYDAATGKLVRSIEQLG  332 (342)
T ss_dssp             EETTTTEEEEEETTT--EEEEE---S
T ss_pred             EcCCCCeEEEEeCcCCcEEeehhccC
Confidence             4568999999999999999887544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.41  E-value=0.048  Score=44.30  Aligned_cols=144  Identities=12%  Similarity=0.094  Sum_probs=85.4

Q ss_pred             CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCceeeeec-------------
Q 022303          122 RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS-------------  188 (299)
Q Consensus       122 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~-------------  188 (299)
                      ++.|+.|..+| +.+++.........+.....+..+...++-+.++.-.|+.++++++..-......             
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~   85 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPT   85 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccc
Confidence            34888888888 8889883332222222223355588888888888777899999998754321100             


Q ss_pred             cCCccceeeeec----cCCCeEEEecCCCcEEEEEcCCc-----ceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEE
Q 022303          189 REGTFMKGLCMR----YFDPEAVVGCEDGTARVFDMYSR-----KCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAIS  259 (299)
Q Consensus       189 ~~~~~~~~~~~~----~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iw  259 (299)
                      .......+..+.    ..+...+......+|.+|.....     +...++. -.+.+.+++|.++ .++.|..++ ..+.
T Consensus        86 ~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~-~i~v~~~~~-f~~i  162 (275)
T PF00780_consen   86 KLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN-KICVGTSKG-FYLI  162 (275)
T ss_pred             cccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC-EEEEEeCCc-eEEE
Confidence            001111122222    22223333344458888877642     3455553 4577899999855 566666444 8889


Q ss_pred             eCCCCceEEE
Q 022303          260 GLSSDQRVAT  269 (299)
Q Consensus       260 d~~~~~~~~~  269 (299)
                      |+.++.....
T Consensus       163 dl~~~~~~~l  172 (275)
T PF00780_consen  163 DLNTGSPSEL  172 (275)
T ss_pred             ecCCCCceEE
Confidence            9987765433

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.41  E-value=0.016  Score=51.50  Aligned_cols=82  Identities=5%  Similarity=-0.073  Sum_probs=52.7

Q ss_pred             CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEe---------------------------------------
Q 022303          212 DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS---------------------------------------  251 (299)
Q Consensus       212 d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~---------------------------------------  251 (299)
                      .+.+.+.|..+.+...++... .....++++++ +++++.+                                       
T Consensus       214 ~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~  292 (635)
T PRK02888        214 RSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKT  292 (635)
T ss_pred             eEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEE
Confidence            345667777766666555432 23345566666 5555553                                       


Q ss_pred             -CCCcEEEEeCCC-----CceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          252 -SLGSIAISGLSS-----DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       252 -~dg~i~iwd~~~-----~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                       .++.|.+.|.++     .+.+..+....   ....+.++|||+++++++..
T Consensus       293 V~gn~V~VID~~t~~~~~~~v~~yIPVGK---sPHGV~vSPDGkylyVankl  341 (635)
T PRK02888        293 IGGSKVPVVDGRKAANAGSALTRYVPVPK---NPHGVNTSPDGKYFIANGKL  341 (635)
T ss_pred             ECCCEEEEEECCccccCCcceEEEEECCC---CccceEECCCCCEEEEeCCC
Confidence             234588888877     34555555444   67899999999999988753

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.38  E-value=0.029  Score=45.50  Aligned_cols=138  Identities=11%  Similarity=0.008  Sum_probs=91.7

Q ss_pred             EEEecCCCE-EE-EEcCC-eEEEEecCCceee--eeccCC-ccceeeeeccCCCeEEEe-----cCCCcEEEEEcC-Ccc
Q 022303          157 VDFDFDESK-IV-GLIGT-RICIWRRNGLRSV--FPSREG-TFMKGLCMRYFDPEAVVG-----CEDGTARVFDMY-SRK  224 (299)
Q Consensus       157 ~~~~~~~~~-l~-~~~d~-~i~v~d~~~~~~~--~~~~~~-~~~~~~~~~~~~~~l~s~-----~~d~~i~iwd~~-~~~  224 (299)
                      ++.+|.... ++ +-.-| ...+||..+++..  +....+ +..---+|++++..|++.     ...|.|-|||.. ..+
T Consensus        10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~   89 (305)
T PF07433_consen   10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR   89 (305)
T ss_pred             eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence            566664433 33 33333 5677888776522  222222 111123688888887764     345789999999 667


Q ss_pred             eeeeccccCCceeEEEeCCC-CeEEEEeC------------------CCcEEEEeCCCCceEEEeec----cCCCCcEEE
Q 022303          225 CSQIIRMHCAPVTSLSLSED-QLIISGSS------------------LGSIAISGLSSDQRVATLRS----TDCTGHIIC  281 (299)
Q Consensus       225 ~~~~~~~~~~~i~~~~~~~~-~~l~~~~~------------------dg~i~iwd~~~~~~~~~~~~----~~~~~~i~~  281 (299)
                      .+.++..+.-....+.+.|| +.|+++..                  +-+|.+.|..+|+++.+..-    |..  .|+.
T Consensus        90 ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l--SiRH  167 (305)
T PF07433_consen   90 RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL--SIRH  167 (305)
T ss_pred             EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc--ceee
Confidence            78888877766778888888 67666532                  33677788889998877543    444  7999


Q ss_pred             EEccCCCCeEEeeec
Q 022303          282 LMYPQFLHMLFFLCF  296 (299)
Q Consensus       282 ~~~s~~g~~l~s~s~  296 (299)
                      ++++++|..++..-+
T Consensus       168 La~~~~G~V~~a~Q~  182 (305)
T PF07433_consen  168 LAVDGDGTVAFAMQY  182 (305)
T ss_pred             EEecCCCcEEEEEec
Confidence            999999988776544

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.38  E-value=0.04  Score=48.84  Aligned_cols=137  Identities=16%  Similarity=0.105  Sum_probs=85.7

Q ss_pred             cEEEEecCCceeEEEecCCCc------e----eEEEEe-cCCC---EEE-EEcCCeEEEEecCCceeeeeccCCccceee
Q 022303          133 VMRLWSLEGYKCVEEYSLPNA------A----SLVDFD-FDES---KIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGL  197 (299)
Q Consensus       133 ~i~iwd~~~~~~~~~~~~~~~------~----~~~~~~-~~~~---~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  197 (299)
                      .|.-.|.++|+.+..++....      .    ...... -++.   .++ ++.+|.++.+|.++++..........  .+
T Consensus       257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~--~~  334 (488)
T cd00216         257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ--PM  334 (488)
T ss_pred             eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc--cc
Confidence            799999999999988763211      0    111111 2333   344 78899999999999876654432110  11


Q ss_pred             eeccCCCeEEEe------------------cCCCcEEEEEcCCcceeeeccccC--------Cce--eEEEeCCCCeEEE
Q 022303          198 CMRYFDPEAVVG------------------CEDGTARVFDMYSRKCSQIIRMHC--------APV--TSLSLSEDQLIIS  249 (299)
Q Consensus       198 ~~~~~~~~l~s~------------------~~d~~i~iwd~~~~~~~~~~~~~~--------~~i--~~~~~~~~~~l~~  249 (299)
                      +..+  ..++.+                  ..+|.+.-.|+.+++.+.+.....        .+.  ..+... +..+++
T Consensus       335 ~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~-g~~v~~  411 (488)
T cd00216         335 AYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATA-GNLVFA  411 (488)
T ss_pred             ccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEec-CCeEEE
Confidence            2222  223222                  246789999999999887765321        111  122222 257888


Q ss_pred             EeCCCcEEEEeCCCCceEEEeeccC
Q 022303          250 GSSLGSIAISGLSSDQRVATLRSTD  274 (299)
Q Consensus       250 ~~~dg~i~iwd~~~~~~~~~~~~~~  274 (299)
                      ++.||.|+.+|..+|+.+.+.+...
T Consensus       412 g~~dG~l~ald~~tG~~lW~~~~~~  436 (488)
T cd00216         412 GAADGYFRAFDATTGKELWKFRTPS  436 (488)
T ss_pred             ECCCCeEEEEECCCCceeeEEECCC
Confidence            8899999999999999998876543

The alignment model contains an 8-bladed beta-propeller.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.37  E-value=0.015  Score=51.46  Aligned_cols=152  Identities=12%  Similarity=0.049  Sum_probs=95.5

Q ss_pred             ecCCEEEEEeCCCcEEEEecCCceeEEEecCCCc-------eeE--EEEecCCCEEEEEcCCeEEEEecCCceeeeeccC
Q 022303          120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA-------ASL--VDFDFDESKIVGLIGTRICIWRRNGLRSVFPSRE  190 (299)
Q Consensus       120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~  190 (299)
                      +.++.++.++.++.+.-.|..+|+.+..++....       .+.  +....++..++++.++.|+-+|.++++.......
T Consensus        59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216          59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             EECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence            3466788888899999999999998887764432       011  1221114444488999999999998875544332


Q ss_pred             Ccc---ce-e-eeeccCCCeEEEec---------CCCcEEEEEcCCcceeeeccccCC--------------------ce
Q 022303          191 GTF---MK-G-LCMRYFDPEAVVGC---------EDGTARVFDMYSRKCSQIIRMHCA--------------------PV  236 (299)
Q Consensus       191 ~~~---~~-~-~~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~--------------------~i  236 (299)
                      ...   .. + -.....+..++.++         .++.+..+|..+|+.+..+.....                    .+
T Consensus       139 ~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v  218 (488)
T cd00216         139 NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS  218 (488)
T ss_pred             CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence            211   00 0 00111123444543         367899999999998877653211                    01


Q ss_pred             -eEEEeCCC-CeEEEEeCCC------------------cEEEEeCCCCceEEEee
Q 022303          237 -TSLSLSED-QLIISGSSLG------------------SIAISGLSSDQRVATLR  271 (299)
Q Consensus       237 -~~~~~~~~-~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~  271 (299)
                       ...++.+. ..++.++.++                  .|.-+|..+|+.+..++
T Consensus       219 w~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~  273 (488)
T cd00216         219 WASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ  273 (488)
T ss_pred             cCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence             12344444 6677777665                  79999999999887765

The alignment model contains an 8-bladed beta-propeller.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.36  E-value=0.0022  Score=56.57  Aligned_cols=134  Identities=13%  Similarity=0.094  Sum_probs=89.4

Q ss_pred             eEEEecCCEEEEEeCCCcEEEEecCCceeEEE-ecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce---eee--e
Q 022303          116 DQCRMKRGLILTGVGDKVMRLWSLEGYKCVEE-YSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR---SVF--P  187 (299)
Q Consensus       116 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~---~~~--~  187 (299)
                      +|+...+.+++.|+.-|.+++|+-..++.... ..+....+. ..++++..+++ |+..|.|.++-++...   ..+  .
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~  118 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP  118 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence            34444566999999999999999887765432 223444444 78888888888 9999999999887642   122  2


Q ss_pred             ccC--CccceeeeeccCCCeEEEecCCCcEEEEEcCCc----ceeeeccccCCceeEEEeCCCCeEEE
Q 022303          188 SRE--GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR----KCSQIIRMHCAPVTSLSLSEDQLIIS  249 (299)
Q Consensus       188 ~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~l~~  249 (299)
                      .+.  +....+++|+.++..+++|...|+|..-.+.+.    ...+.+....+.|-.+.+....+|++
T Consensus       119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVS  186 (726)
T KOG3621|consen  119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVS  186 (726)
T ss_pred             ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHh
Confidence            222  223346789999999999999999998888762    11222223455676666554433333

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.36  E-value=0.018  Score=47.99  Aligned_cols=160  Identities=14%  Similarity=0.175  Sum_probs=94.1

Q ss_pred             CcEEEEecCCceeEEEecCCC--ceeEE---EEecC----CCEEE-EEc---------C-CeEEEEecCCc-----e-ee
Q 022303          132 KVMRLWSLEGYKCVEEYSLPN--AASLV---DFDFD----ESKIV-GLI---------G-TRICIWRRNGL-----R-SV  185 (299)
Q Consensus       132 g~i~iwd~~~~~~~~~~~~~~--~~~~~---~~~~~----~~~l~-~~~---------d-~~i~v~d~~~~-----~-~~  185 (299)
                      ..|++.|..+.+.+..+..+.  .+.++   .+..+    ..+++ |+.         . |.+.+|++...     + ..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            357888888888777666443  33332   22222    34555 544         2 88999999883     2 11


Q ss_pred             --eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcc-eeeecc-ccCCceeEEEeCCCCeEEEEeCCCcEEEEeC
Q 022303          186 --FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-CSQIIR-MHCAPVTSLSLSEDQLIISGSSLGSIAISGL  261 (299)
Q Consensus       186 --~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~  261 (299)
                        .....+.   +.++.+.+.+++++. ++.|.+|++...+ ....-. .....+.++....+ ++++|.....+.++..
T Consensus        82 i~~~~~~g~---V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   82 IHSTEVKGP---VTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN-YILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEESS----EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-EEEEEESSSSEEEEEE
T ss_pred             EEEEeecCc---ceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecccc-EEEEEEcccCEEEEEE
Confidence              1222333   456666677755544 5889999998777 333221 22336677766544 8889998888888754


Q ss_pred             CC-CceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          262 SS-DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       262 ~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +. +..+..+........++++.|-++++.++++..
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~  192 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK  192 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET
T ss_pred             EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC
Confidence            43 333444443333227888888866666666554

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.34  E-value=0.00049  Score=52.42  Aligned_cols=138  Identities=12%  Similarity=0.005  Sum_probs=75.6

Q ss_pred             EEEEEeCCCcEEEEecCCceeEE-EecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCceeeeeccCCccceeeeeccC
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVE-EYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYF  202 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  202 (299)
                      .+..-+.||.|.-+++..-+... .-..+..... ....+.+.++|+.+|.|++|..................+.+.-|.
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~-v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~  110 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQR-VVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN  110 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhccee-ecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence            34555777888877765433211 1111111111 111233344499999999998874332222222222223344444


Q ss_pred             C---CeEEEecCCCcEEEEEcCCcceeeeccccC-CceeEEEeCCC-CeEEEE--eCCCcEEEEeCC
Q 022303          203 D---PEAVVGCEDGTARVFDMYSRKCSQIIRMHC-APVTSLSLSED-QLIISG--SSLGSIAISGLS  262 (299)
Q Consensus       203 ~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~-~~l~~~--~~dg~i~iwd~~  262 (299)
                      +   ...+++..+|.|+.|+..-.+.+.....|. .++..+..... ++++.+  |.|..++.|++.
T Consensus       111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            3   347889999999999999887776665555 33433333332 555555  556666666654

>smart00320 WD40 WD40 repeats

Probab=97.32  E-value=0.00097  Score=35.17  Aligned_cols=34  Identities=21%  Similarity=0.485  Sum_probs=28.8

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEe
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWS  138 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd  138 (299)
                      +..+..|...|.++.+ +++ ++++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4566789999999999 433 999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.27  E-value=6.5e-05  Score=65.10  Aligned_cols=175  Identities=14%  Similarity=0.172  Sum_probs=104.4

Q ss_pred             cCeeEEEe---cCC-EEEEEeCCCcEEEEecCCceeE-EEe-cCC-CceeEEEEec-CCCEEEEEc-----CCeEEEEec
Q 022303          113 VGVDQCRM---KRG-LILTGVGDKVMRLWSLEGYKCV-EEY-SLP-NAASLVDFDF-DESKIVGLI-----GTRICIWRR  179 (299)
Q Consensus       113 ~~i~~~~~---~~~-~l~s~~~dg~i~iwd~~~~~~~-~~~-~~~-~~~~~~~~~~-~~~~l~~~~-----d~~i~v~d~  179 (299)
                      ..+.|+++   .+. .++.|..+|.|.+-......-. ..+ ..+ ....+++|++ |.+.|+++.     |..+.+||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            34556654   233 8899999999999877643222 222 222 3445588877 445666444     348999999


Q ss_pred             CCce------eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCC-C-CeEEEEe
Q 022303          180 NGLR------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-D-QLIISGS  251 (299)
Q Consensus       180 ~~~~------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~~~~  251 (299)
                      .+..      ..+..........+||-.+.+.+++|.....+.++|++.... .........+..+.++| . .++++-.
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp~~~nY~cs~~  215 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDPFSPNYFCSNS  215 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhcccceecCCCCCceeccc
Confidence            8752      112221111122567877777788999999999999984322 11112344566677787 4 6665555


Q ss_pred             CCCcEEEEe-CCCCc-eEEEeeccCC--CCcEEEEEccCCCC
Q 022303          252 SLGSIAISG-LSSDQ-RVATLRSTDC--TGHIICLMYPQFLH  289 (299)
Q Consensus       252 ~dg~i~iwd-~~~~~-~~~~~~~~~~--~~~i~~~~~s~~g~  289 (299)
                       ||.|.+|| .++-+ ++..+.....  ...+..++|.|...
T Consensus       216 -dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt  256 (783)
T KOG1008|consen  216 -DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT  256 (783)
T ss_pred             -cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc
Confidence             99999999 44332 2333322222  01488899998643

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.00099  Score=54.79  Aligned_cols=69  Identities=12%  Similarity=0.150  Sum_probs=58.8

Q ss_pred             eeeeccCCCe-EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCc
Q 022303          196 GLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQ  265 (299)
Q Consensus       196 ~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~  265 (299)
                      -+++++.... +..++-+.+|++.|+++...+..+..+ ..+++++|+-+  .++.+|-.+|.|.|||++..+
T Consensus       198 dlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  198 DLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             hhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            3577777774 778899999999999999888888776 77999999976  788888899999999998754

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.26  E-value=0.097  Score=45.25  Aligned_cols=50  Identities=12%  Similarity=0.075  Sum_probs=39.3

Q ss_pred             cEEEEecCCceeEEEecCC-CceeEEEEecCCCEEEEEcCCeEEEEecCCce
Q 022303          133 VMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNGLR  183 (299)
Q Consensus       133 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~  183 (299)
                      .|.+|+.. |+.+.++... +..+.+.|+.+..+++...||.+++||+.+..
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~  112 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF  112 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce
Confidence            58999865 7777776644 45666999998888889999999999997554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.25  E-value=0.00061  Score=61.27  Aligned_cols=100  Identities=13%  Similarity=0.095  Sum_probs=76.0

Q ss_pred             ceeeeeccCCCeEEEec----CCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEE
Q 022303          194 MKGLCMRYFDPEAVVGC----EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVA  268 (299)
Q Consensus       194 ~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~  268 (299)
                      ..+.+|+|..+.++.++    ..|.|.|| .++|++-... ...-.+++++|+|. -.|+.|-.-|.+.+|...+.+.-.
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~V-t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDV-TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCccc-ccceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence            34668999999977654    45778887 4567755444 23344678999999 788999999999999988776555


Q ss_pred             EeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          269 TLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       269 ~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ....|..  +|..+.|||+|..|+++.--
T Consensus        96 v~~th~a--~i~~l~wS~~G~~l~t~d~~  122 (1416)
T KOG3617|consen   96 VVETHPA--PIQGLDWSHDGTVLMTLDNP  122 (1416)
T ss_pred             eccCCCC--CceeEEecCCCCeEEEcCCC
Confidence            5556666  99999999999999987543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.25  E-value=8.2e-05  Score=64.49  Aligned_cols=154  Identities=15%  Similarity=0.226  Sum_probs=95.1

Q ss_pred             eccccCeeEEEec--CC-EEEEEe----CCCcEEEEecCCc--eeEEE--ecC--CCceeEEEEecCCCEEE-EEcCCeE
Q 022303          109 KAHSVGVDQCRMK--RG-LILTGV----GDKVMRLWSLEGY--KCVEE--YSL--PNAASLVDFDFDESKIV-GLIGTRI  174 (299)
Q Consensus       109 ~~h~~~i~~~~~~--~~-~l~s~~----~dg~i~iwd~~~~--~~~~~--~~~--~~~~~~~~~~~~~~~l~-~~~d~~i  174 (299)
                      .+|..+.++++|.  |. .||.|-    .|..+.|||+.++  .+...  +..  .....+++|..+.+++. |.....+
T Consensus        99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~  178 (783)
T KOG1008|consen   99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSV  178 (783)
T ss_pred             ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchh
Confidence            4667778888882  22 666663    3568999999876  22221  221  12333578887777777 8888899


Q ss_pred             EEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEE-cCCcc-eeeeccccC----CceeEEEeCCC--Ce
Q 022303          175 CIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFD-MYSRK-CSQIIRMHC----APVTSLSLSED--QL  246 (299)
Q Consensus       175 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~-~~~~~~~~~----~~i~~~~~~~~--~~  246 (299)
                      .++|++................+.+.|..+..++...||.|.+|| .+.-+ ++..+....    ..+..++|+|-  ..
T Consensus       179 ~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtgl  258 (783)
T KOG1008|consen  179 HIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGL  258 (783)
T ss_pred             hhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcch
Confidence            999998543211111111112346777554445555699999999 43322 233332222    24899999997  56


Q ss_pred             EEEEeC-CCcEEEEeCC
Q 022303          247 IISGSS-LGSIAISGLS  262 (299)
Q Consensus       247 l~~~~~-dg~i~iwd~~  262 (299)
                      +++.+. .++|+++|+.
T Consensus       259 la~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  259 LAVLSRDSITIRLYDIC  275 (783)
T ss_pred             hhhhccCcceEEEeccc
Confidence            777775 4679999986

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.037  Score=41.92  Aligned_cols=179  Identities=12%  Similarity=0.001  Sum_probs=109.7

Q ss_pred             EEecCC-EEEEEeCC--CcEEEEecCCceeEEEecCCC-ceeEEEEecCCCEEE--EEcCCeEEEEecCCceeeee-ccC
Q 022303          118 CRMKRG-LILTGVGD--KVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFP-SRE  190 (299)
Q Consensus       118 ~~~~~~-~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~-~~~  190 (299)
                      +...++ ++.+.+.-  ..|++||+.+++.+.+-.... ....--...-+..+.  .-.+|....||.++-+..-. ..+
T Consensus        51 L~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~  130 (262)
T COG3823          51 LEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE  130 (262)
T ss_pred             eeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC
Confidence            556566 66666544  379999999999887665442 222211122233333  66788888898876542211 112


Q ss_pred             CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc--cC---CceeEEEeCCCCeEEEEeCCCcEEEEeCCCCc
Q 022303          191 GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM--HC---APVTSLSLSEDQLIISGSSLGSIAISGLSSDQ  265 (299)
Q Consensus       191 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~---~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  265 (299)
                      +.   ...+..++..++.++...+++.-|.++......+..  ..   ..++.+.|-.+...|-.-.+..|...|..+|+
T Consensus       131 Ge---GWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGr  207 (262)
T COG3823         131 GE---GWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGR  207 (262)
T ss_pred             Cc---ceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCc
Confidence            22   246667777788887778888888877655444331  12   23444555444556666666777777888888


Q ss_pred             eEEEeeccCC----------CCcEEEEEccCCC-CeEEeeecccC
Q 022303          266 RVATLRSTDC----------TGHIICLMYPQFL-HMLFFLCFLPL  299 (299)
Q Consensus       266 ~~~~~~~~~~----------~~~i~~~~~s~~g-~~l~s~s~~~~  299 (299)
                      .+..+....-          ....+.+++.|++ +++++|-.+|.
T Consensus       208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~  252 (262)
T COG3823         208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPL  252 (262)
T ss_pred             EEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCce
Confidence            7666532210          1267889999976 88889887763

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.19  E-value=0.046  Score=47.46  Aligned_cols=164  Identities=12%  Similarity=0.017  Sum_probs=85.4

Q ss_pred             eccccCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEE-ecCCce-ee
Q 022303          109 KAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIW-RRNGLR-SV  185 (299)
Q Consensus       109 ~~h~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~-d~~~~~-~~  185 (299)
                      ....-....+.+ |++.++....||...++..........    ......+|.+.+++.+-..+++|.++ ++.... ..
T Consensus        29 g~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~  104 (443)
T PF04053_consen   29 GSCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKS  104 (443)
T ss_dssp             EE-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT--
T ss_pred             CCCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc----CceeEEEEecCccEEEEECCCeEEEEEcCccccceE
Confidence            334445667777 666444447788888888554443322    23445888886665556668889996 332221 12


Q ss_pred             eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC
Q 022303          186 FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD  264 (299)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~  264 (299)
                      +.... ....+..    |..|+..+ ++.|.+||..+++.+..+...  +|..+.|+++ ++++..+.+ .+.|++....
T Consensus       105 i~~~~-~~~~If~----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~  175 (443)
T PF04053_consen  105 IKLPF-SVEKIFG----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLE  175 (443)
T ss_dssp             ---SS--EEEEE-----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred             EcCCc-ccceEEc----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence            22211 1121222    55555554 448999999999999998543  3899999999 888777754 6888876433


Q ss_pred             -----------ceEEEeeccCCCCcEEEEEccCC
Q 022303          265 -----------QRVATLRSTDCTGHIICLMYPQF  287 (299)
Q Consensus       265 -----------~~~~~~~~~~~~~~i~~~~~s~~  287 (299)
                                 ..+..+..-..  .|.+.+|..+
T Consensus       176 ~~~~~~~~g~e~~f~~~~E~~~--~IkSg~W~~d  207 (443)
T PF04053_consen  176 AVAAIPEEGVEDAFELIHEISE--RIKSGCWVED  207 (443)
T ss_dssp             HHHHBTTTB-GGGEEEEEEE-S----SEEEEETT
T ss_pred             hcccccccCchhceEEEEEecc--eeEEEEEEcC
Confidence                       03333333133  6888888765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.11  E-value=0.16  Score=44.00  Aligned_cols=167  Identities=11%  Similarity=0.042  Sum_probs=87.8

Q ss_pred             cCeeEEEec-CCEEEEEeCCCcEEEEecCCceeEEEecCC-----CceeEE-----EEecCCCEEEEEcCCeEEEEecCC
Q 022303          113 VGVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLP-----NAASLV-----DFDFDESKIVGLIGTRICIWRRNG  181 (299)
Q Consensus       113 ~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~-----~~~~~~~~l~~~~d~~i~v~d~~~  181 (299)
                      +.|.++.|. ++.|+.-..||.++++|+. |+.  .+...     ..+...     .+..+| .++-+.++.+++.+-..
T Consensus        81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~G-ivvLt~~~~~~~v~n~~  156 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFYKNG-IVVLTGNNRFYVVNNID  156 (410)
T ss_pred             CCEEEEEECCCCeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCcccccccccccCCCC-EEEECCCCeEEEEeCcc
Confidence            789999994 4488899999999999986 333  22211     111111     122233 33344555555443222


Q ss_pred             -cee--eeeccCCccc---------eeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEE
Q 022303          182 -LRS--VFPSREGTFM---------KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLII  248 (299)
Q Consensus       182 -~~~--~~~~~~~~~~---------~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~  248 (299)
                       +..  ......+...         .+..+..+....+....++.+.+.+-...+.   + ...+++..|++||+ +++|
T Consensus       157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~~iA  232 (410)
T PF04841_consen  157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGKFIA  232 (410)
T ss_pred             ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEECCCCCEEE
Confidence             211  0100000000         0001111122222233334444333221111   2 12468999999999 9999


Q ss_pred             EEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCC
Q 022303          249 SGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL  288 (299)
Q Consensus       249 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g  288 (299)
                      .-..+|.+.+.+..-.+.+..+...... ....|.|.-+.
T Consensus       233 l~t~~g~l~v~ssDf~~~~~e~~~~~~~-~p~~~~WCG~d  271 (410)
T PF04841_consen  233 LFTDSGNLWVVSSDFSEKLCEFDTDSKS-PPKQMAWCGND  271 (410)
T ss_pred             EEECCCCEEEEECcccceeEEeecCcCC-CCcEEEEECCC
Confidence            9999999999987666666666655322 56677776544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=0.1  Score=44.62  Aligned_cols=159  Identities=11%  Similarity=0.056  Sum_probs=104.1

Q ss_pred             cEEEEecCCceeEEEecCC-CceeEEEEecCCCEEE--EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEe
Q 022303          133 VMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVG  209 (299)
Q Consensus       133 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  209 (299)
                      .+...+............. .....+++++.+..+.  ...++.|.+.|..+.........+.....+++.++++.++.+
T Consensus        54 ~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~  133 (381)
T COG3391          54 DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVA  133 (381)
T ss_pred             eeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEE
Confidence            5555555433322222322 2233478888888666  444689999997766544433333344457899999886655


Q ss_pred             cC---CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-C-eEEEEeCCCcEEEEeCCCCceEE-E----eeccCCCCcE
Q 022303          210 CE---DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGSSLGSIAISGLSSDQRVA-T----LRSTDCTGHI  279 (299)
Q Consensus       210 ~~---d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~-~----~~~~~~~~~i  279 (299)
                      ..   ++.+.+.|..+.+.+........+ ..++++|+ + .+++-..++.|.+.|.......+ .    .....   ..
T Consensus       134 n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~---~P  209 (381)
T COG3391         134 NAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT---GP  209 (381)
T ss_pred             ecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC---CC
Confidence            44   789999999998888875443344 89999998 6 45555579999999987665553 1    21122   45


Q ss_pred             EEEEccCCCCeEEeee
Q 022303          280 ICLMYPQFLHMLFFLC  295 (299)
Q Consensus       280 ~~~~~s~~g~~l~s~s  295 (299)
                      ..+.++|+|.++.+.-
T Consensus       210 ~~i~v~~~g~~~yV~~  225 (381)
T COG3391         210 AGIAVDPDGNRVYVAN  225 (381)
T ss_pred             ceEEECCCCCEEEEEe
Confidence            7789999999776544

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.07  E-value=0.01  Score=50.93  Aligned_cols=130  Identities=14%  Similarity=0.066  Sum_probs=80.4

Q ss_pred             cCCCEEE--EEcCCeEEEEecCCceeee--eccCCccceeeeeccCCCe-------EEEecCCCcEEEEEcCCcce--ee
Q 022303          161 FDESKIV--GLIGTRICIWRRNGLRSVF--PSREGTFMKGLCMRYFDPE-------AVVGCEDGTARVFDMYSRKC--SQ  227 (299)
Q Consensus       161 ~~~~~l~--~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------l~s~~~d~~i~iwd~~~~~~--~~  227 (299)
                      .+.++|+  +.....++-.|++.++.+-  .....  .....+.++...       -+.|-.++.|.-||++-...  +.
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~  420 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA  420 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence            3444555  4555677777887775332  22222  112344444322       35577788999999984322  11


Q ss_pred             eccc----cCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEe-eccCCCCcEEEEEccCCCCeEEeee
Q 022303          228 IIRM----HCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATL-RSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       228 ~~~~----~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ..+.    ......|.+-..+.++++||.+|.|++||. .+..-++. .+-..  +|..+..+.+|+++++.+
T Consensus       421 ~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~--~I~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  421 VVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGD--AIKHVDVTADGKWILATC  490 (644)
T ss_pred             eeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCC--ceeeEEeeccCcEEEEec
Confidence            1111    223455665555589999999999999997 55544444 34444  999999999999887654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.02  E-value=0.051  Score=36.89  Aligned_cols=72  Identities=22%  Similarity=0.271  Sum_probs=53.9

Q ss_pred             eEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEc
Q 022303          205 EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMY  284 (299)
Q Consensus       205 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  284 (299)
                      .|++|+.|..|++|+-.  +.+.++.. .+.|+++.-.....++.+-.+|+|-+|+-  .+.+...+...   .+.++++
T Consensus        17 eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~---~~~~~~~   88 (111)
T PF14783_consen   17 ELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKN---QVTSMAF   88 (111)
T ss_pred             eEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCC---CeEEEEE
Confidence            39999999999999865  66777744 56688888777778999999999999985  44455555444   3555543

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.01  E-value=0.0049  Score=53.79  Aligned_cols=93  Identities=18%  Similarity=0.133  Sum_probs=70.2

Q ss_pred             CCceeEEEEecCCCEEE-EEcCCeEEEEecCCce-eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeee
Q 022303          151 PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI  228 (299)
Q Consensus       151 ~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  228 (299)
                      +..+..+.|+|.-.++| +..+|.+.++.++-.+ ..+..+........||.++|+.++.|-.||+|++.|..++..+..
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            34455699999999999 9999999888887333 223323334444789999999999999999999999999988776


Q ss_pred             cc-ccCCceeEEEeCC
Q 022303          229 IR-MHCAPVTSLSLSE  243 (299)
Q Consensus       229 ~~-~~~~~i~~~~~~~  243 (299)
                      +. .....|.++.|.+
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence            32 3456677777753

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.87  E-value=0.004  Score=35.23  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=29.5

Q ss_pred             CCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceE
Q 022303          233 CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV  267 (299)
Q Consensus       233 ~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~  267 (299)
                      ...|..++|+|. .++|.++.+|.|.++.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            456999999999 99999999999999999 55543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.84  E-value=0.22  Score=44.54  Aligned_cols=62  Identities=10%  Similarity=0.096  Sum_probs=43.1

Q ss_pred             CcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccC
Q 022303          213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTD  274 (299)
Q Consensus       213 ~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  274 (299)
                      +.+.-+|+.+++.+...........+.....+.+++.++.||.++.+|.++|+.+..++...
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~  502 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS  502 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence            56888899999888766422211222212233567778889999999999999998887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.66  E-value=0.059  Score=50.99  Aligned_cols=140  Identities=11%  Similarity=-0.027  Sum_probs=87.8

Q ss_pred             CceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEc----CC----
Q 022303          152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDM----YS----  222 (299)
Q Consensus       152 ~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~----~~----  222 (299)
                      ..++.+.|..+.+.++ +..+|.|.+-|..+.....-+.......+.+|+|+.+.++..+..+++.+-+-    -.    
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L  148 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL  148 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence            4566788888887777 99999999999888764444433333446799999999776666666554321    11    


Q ss_pred             ---------------cceeeeccc---------------------cCCceeEEEeCCC-CeEEEE-----eCCCcEEEEe
Q 022303          223 ---------------RKCSQIIRM---------------------HCAPVTSLSLSED-QLIISG-----SSLGSIAISG  260 (299)
Q Consensus       223 ---------------~~~~~~~~~---------------------~~~~i~~~~~~~~-~~l~~~-----~~dg~i~iwd  260 (299)
                                     |+....|.+                     ..+.=+++.|--| +++|+.     .....|++||
T Consensus       149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d  228 (1265)
T KOG1920|consen  149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD  228 (1265)
T ss_pred             ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence                           111111111                     0111234788777 788873     3337899999


Q ss_pred             CCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          261 LSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      .+ |.+-.+-....+  .-.+++|-|.|..+++-
T Consensus       229 rE-g~Lns~se~~~~--l~~~LsWkPsgs~iA~i  259 (1265)
T KOG1920|consen  229 RE-GALNSTSEPVEG--LQHSLSWKPSGSLIAAI  259 (1265)
T ss_pred             cc-chhhcccCcccc--cccceeecCCCCeEeee
Confidence            86 554333333333  55778999998888764

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.57  E-value=0.34  Score=40.03  Aligned_cols=167  Identities=10%  Similarity=-0.001  Sum_probs=95.2

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEec---CCC---ceeEEEEecCCCEEEEEcC------------CeEEEEecCCceee
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYS---LPN---AASLVDFDFDESKIVGLIG------------TRICIWRRNGLRSV  185 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~---~~~~~~~~~~~~~l~~~~d------------~~i~v~d~~~~~~~  185 (299)
                      .|+++...  +.+++.+++..+..+.   ...   ......+.|+|.+.+++..            |.++.+|..+....
T Consensus        79 ~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~  156 (307)
T COG3386          79 RLIACEHG--VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR  156 (307)
T ss_pred             eEEEEccc--cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEE
Confidence            56555443  3445655555422221   111   1122788899988874433            34555564333222


Q ss_pred             eeccCCccceeeeeccCCCeEEEec-CCCcEEEEEcCC--cc----e-eeeccccCCceeEEEeCCC-CeEEEEeCCC-c
Q 022303          186 FPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYS--RK----C-SQIIRMHCAPVTSLSLSED-QLIISGSSLG-S  255 (299)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~--~~----~-~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg-~  255 (299)
                      .....-.....+||+|+++.++.+. ..+.|.-|++..  +.    . ...+....+..-.++...+ .+.+++..+| .
T Consensus       157 l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~  236 (307)
T COG3386         157 LLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGR  236 (307)
T ss_pred             eecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCce
Confidence            1111112233579999998866554 457888887752  11    1 1122233455566777766 5554444444 8


Q ss_pred             EEEEeCCCCceEEEeeccCCCCcEEEEEcc-CCCCeEEeee
Q 022303          256 IAISGLSSDQRVATLRSTDCTGHIICLMYP-QFLHMLFFLC  295 (299)
Q Consensus       256 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~s~s  295 (299)
                      |.+|+.. |+++..+..+..  .+++++|- |+.+.|+..+
T Consensus       237 v~~~~pd-G~l~~~i~lP~~--~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         237 VVRFNPD-GKLLGEIKLPVK--RPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             EEEECCC-CcEEEEEECCCC--CCccceEeCCCcCEEEEEe
Confidence            9999997 999999988865  78888884 4455555443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.54  E-value=0.26  Score=38.28  Aligned_cols=126  Identities=10%  Similarity=0.118  Sum_probs=76.1

Q ss_pred             EEEecCCCEEEEEc----------CCeEEEEecCCceeeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEE--cCCc
Q 022303          157 VDFDFDESKIVGLI----------GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFD--MYSR  223 (299)
Q Consensus       157 ~~~~~~~~~l~~~~----------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd--~~~~  223 (299)
                      -..+|+|++.+|..          .|.++.|-.......+...-+ +...++|..+.+. .++-+.+-.|.-||  ..+|
T Consensus       114 gkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~-IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG  192 (310)
T KOG4499|consen  114 GKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVG-ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTG  192 (310)
T ss_pred             CccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhcc-CCccccccccCcEEEEEccCceEEeeeecCCCcc
Confidence            56689999866433          235666655443222221111 1223567655444 44555566676676  5544


Q ss_pred             ce-----eeeccc----cCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEcc
Q 022303          224 KC-----SQIIRM----HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYP  285 (299)
Q Consensus       224 ~~-----~~~~~~----~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  285 (299)
                      ..     +..++.    .....-.++...+ .+.++.-..++|...|..+|+.+.+++-...  .|++++|-
T Consensus       193 ~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~--qitsccFg  262 (310)
T KOG4499|consen  193 DLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP--QITSCCFG  262 (310)
T ss_pred             cccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC--ceEEEEec
Confidence            32     222211    1112234455555 7777888889999999999999999998877  89999995

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.53  E-value=0.14  Score=43.45  Aligned_cols=53  Identities=8%  Similarity=-0.021  Sum_probs=40.2

Q ss_pred             CCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCce
Q 022303          131 DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR  183 (299)
Q Consensus       131 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~  183 (299)
                      .+.+.++|+++++...............|+|+++.++...++.|++.+..++.
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~   74 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ   74 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSE
T ss_pred             ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCC
Confidence            45788999999876654444445556999999999998889999999987654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.30  E-value=0.00078  Score=57.00  Aligned_cols=139  Identities=12%  Similarity=0.146  Sum_probs=99.6

Q ss_pred             EEecCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCCeEEEEecCCce-eeeeccCCcc
Q 022303          118 CRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLR-SVFPSREGTF  193 (299)
Q Consensus       118 ~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~-~~~~~~~~~~  193 (299)
                      ...+++ -++.++.+..+..||-. ++.......+...+.++|+.++..++  +-..+.+++||+.+.. ..+.....+.
T Consensus        41 ~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s  119 (615)
T KOG2247|consen   41 RWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSS  119 (615)
T ss_pred             eEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcch
Confidence            333544 68888889999999854 55555555666677799988888765  7788999999998763 1222222222


Q ss_pred             ceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEE
Q 022303          194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIA  257 (299)
Q Consensus       194 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~  257 (299)
                      .....|++..+.++.+...+.+.+++-.+.+.+...-.|...++++++.++.+.+.++.|..+.
T Consensus       120 ~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~  183 (615)
T KOG2247|consen  120 KSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLS  183 (615)
T ss_pred             HHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHH
Confidence            2245788888888889899999999998877766664488889999999886666666655443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.24  E-value=0.01  Score=54.13  Aligned_cols=72  Identities=15%  Similarity=0.076  Sum_probs=63.6

Q ss_pred             ceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          224 KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       224 ~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +....|..+....+|++|+.+ ++|+.|+..|.|+++++.+|.......+|..  +|+.+.-+.+|..+++.+-+
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S--avT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS--AVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccc--ccccccccCCcceeeeeccc
Confidence            344556677888999999988 9999999999999999999999999999998  99999999999988877654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.21  E-value=0.83  Score=41.02  Aligned_cols=152  Identities=13%  Similarity=0.109  Sum_probs=92.5

Q ss_pred             cCCEEEEEeCCCcEEEEecCCceeEEEecCCCc--eeE----------EEEecCCCEEEEEcCCeEEEEecCCceeeeec
Q 022303          121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA--ASL----------VDFDFDESKIVGLIGTRICIWRRNGLRSVFPS  188 (299)
Q Consensus       121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~----------~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~  188 (299)
                      .++.++.++.++.|.-.|..+|+.+..+.....  ...          +++. +++.++++.++.+.-+|..+++.....
T Consensus        68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            466888888899999999999999887764321  110          1221 234444888999999999988765443


Q ss_pred             cCCccc--eeeeecc--CCCeEEEec------CCCcEEEEEcCCcceeeeccccCC------------------------
Q 022303          189 REGTFM--KGLCMRY--FDPEAVVGC------EDGTARVFDMYSRKCSQIIRMHCA------------------------  234 (299)
Q Consensus       189 ~~~~~~--~~~~~~~--~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~------------------------  234 (299)
                      ......  ..+.-.|  .+..++.+.      .+|.|..+|.++|+.+..+..-..                        
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~  226 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD  226 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence            221100  0000011  133455543      268899999999998876542110                        


Q ss_pred             -------ce-eEEEeCCC-CeEEEEeCC-----C-----------cEEEEeCCCCceEEEeecc
Q 022303          235 -------PV-TSLSLSED-QLIISGSSL-----G-----------SIAISGLSSDQRVATLRST  273 (299)
Q Consensus       235 -------~i-~~~~~~~~-~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~  273 (299)
                             .+ ..+++.|+ .++..+..+     +           +|.-.|+++|+..-.++..
T Consensus       227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~  290 (527)
T TIGR03075       227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTT  290 (527)
T ss_pred             ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCC
Confidence                   11 13466676 555555422     2           6777888999987777643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PHA02713 hypothetical protein; Provisional

Probab=96.06  E-value=0.52  Score=42.63  Aligned_cols=172  Identities=9%  Similarity=0.019  Sum_probs=81.7

Q ss_pred             CC-EEEEEeCC------CcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCC-----eEEEEecCCceee-e
Q 022303          122 RG-LILTGVGD------KVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGT-----RICIWRRNGLRSV-F  186 (299)
Q Consensus       122 ~~-~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~-----~i~v~d~~~~~~~-~  186 (299)
                      ++ ..+.||.+      ..+..||..+.+....-.-+..... ....-+++..+ |+.++     ++..||..+..-. .
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~  382 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML  382 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence            44 55666643      3467788777654321111111111 22233555555 66543     5888998876411 1


Q ss_pred             eccCCccceeeeeccCCCeEEEecCCC-----------------------cEEEEEcCCc--ceeeeccccCCceeEEEe
Q 022303          187 PSREGTFMKGLCMRYFDPEAVVGCEDG-----------------------TARVFDMYSR--KCSQIIRMHCAPVTSLSL  241 (299)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~s~~~d~-----------------------~i~iwd~~~~--~~~~~~~~~~~~i~~~~~  241 (299)
                      ...........+...++...+.|+.++                       .+..||+.+.  +.+..+..... -.+++.
T Consensus       383 ~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-~~~~~~  461 (557)
T PHA02713        383 PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-RPGVVS  461 (557)
T ss_pred             CCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc-cCcEEE
Confidence            111111111112233444456666542                       4667887654  22333321111 123334


Q ss_pred             CCCCeEEEEeCC------CcEEEEeCCC-Cc--eEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          242 SEDQLIISGSSL------GSIAISGLSS-DQ--RVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       242 ~~~~~l~~~~~d------g~i~iwd~~~-~~--~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      ..+++.+.|+.+      ..+..||..+ .+  .+..+.....  ....+.+  +|+..+.|++.+
T Consensus       462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~--~~~~~~~--~~~iyv~Gg~~~  523 (557)
T PHA02713        462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS--ALHTILH--DNTIMMLHCYES  523 (557)
T ss_pred             ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc--cceeEEE--CCEEEEEeeecc
Confidence            445666677654      2467899887 43  2333332222  2222222  788888887643

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.00  E-value=0.61  Score=37.26  Aligned_cols=130  Identities=14%  Similarity=0.046  Sum_probs=75.0

Q ss_pred             eeEEEecCCCceeE--EEEecCCCEEE-EEcCC--eEEEEecCCceeeeeccCCccceeeeeccCCCeEE-EecCCCcEE
Q 022303          143 KCVEEYSLPNAASL--VDFDFDESKIV-GLIGT--RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTAR  216 (299)
Q Consensus       143 ~~~~~~~~~~~~~~--~~~~~~~~~l~-~~~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~  216 (299)
                      +.+.++.+......  +.|..++.++- .+.-|  .|+.+|+.+++......-......-.+...++.+. -.-.++...
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f  113 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGF  113 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEE
T ss_pred             EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEE
Confidence            45666766655555  77766666555 44444  89999999886332222111111223333345533 345688899


Q ss_pred             EEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccC
Q 022303          217 VFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTD  274 (299)
Q Consensus       217 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  274 (299)
                      +||..+.+.+.++.- ...=+.++. .++.|+.......|+++|..+.+...++....
T Consensus       114 ~yd~~tl~~~~~~~y-~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~  169 (264)
T PF05096_consen  114 VYDPNTLKKIGTFPY-PGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD  169 (264)
T ss_dssp             EEETTTTEEEEEEE--SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE
T ss_pred             EEccccceEEEEEec-CCcceEEEc-CCCEEEEECCccceEEECCcccceEEEEEEEE
Confidence            999999998888853 445677774 33456666667789999998887777765543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.97  E-value=0.033  Score=50.77  Aligned_cols=104  Identities=17%  Similarity=0.245  Sum_probs=78.8

Q ss_pred             EEEecCCCEEE-EEc----CCeEEEEecCC-ceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc
Q 022303          157 VDFDFDESKIV-GLI----GTRICIWRRNG-LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR  230 (299)
Q Consensus       157 ~~~~~~~~~l~-~~~----d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  230 (299)
                      ..|+|...+++ ++.    .|+|.||--.+ ++.-...+ -+.. .+||+|..-.|+.|-.-|.+.+|...+.+......
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P-~hat-SLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~   98 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYP-VHAT-SLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE   98 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccc-eehh-hhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence            78888888876 433    57888875433 22111111 1111 36899888779999999999999998877766666


Q ss_pred             ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022303          231 MHCAPVTSLSLSED-QLIISGSSLGSIAISGLS  262 (299)
Q Consensus       231 ~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~  262 (299)
                      .|..+|..+.|+++ ..++++..-|.+.+|...
T Consensus        99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            89999999999999 999999999999999875

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.96  E-value=0.22  Score=46.23  Aligned_cols=136  Identities=18%  Similarity=0.255  Sum_probs=90.4

Q ss_pred             EEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecC--------CCEEEEEcCCeEEEEecCCce-eeee--ccC-Cc
Q 022303          125 ILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFD--------ESKIVGLIGTRICIWRRNGLR-SVFP--SRE-GT  192 (299)
Q Consensus       125 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~d~~i~v~d~~~~~-~~~~--~~~-~~  192 (299)
                      |........|+-.|++.|+.+..+..+.......+.|+        ...++|-.+..+..||.+-.. .+..  .+. ..
T Consensus       497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~  576 (794)
T PF08553_consen  497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS  576 (794)
T ss_pred             eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence            44445567899999999999999998876544555553        234669999999999998542 1111  111 01


Q ss_pred             cceeeeeccC-CCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeC
Q 022303          193 FMKGLCMRYF-DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGL  261 (299)
Q Consensus       193 ~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~  261 (299)
                      .....|+... ..++|.|+.+|.|++||--.....-.+.+-..+|..|..+.| +++++.+ +..|.+++.
T Consensus       577 ~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  577 KNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             CCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            1111233333 445999999999999994322223344466899999999999 7666555 566777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.94  E-value=0.24  Score=42.95  Aligned_cols=137  Identities=12%  Similarity=0.155  Sum_probs=90.7

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCC--------CEEEEEcCCeEEEEecCCce--eee---eccC
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE--------SKIVGLIGTRICIWRRNGLR--SVF---PSRE  190 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~~~d~~i~v~d~~~~~--~~~---~~~~  190 (299)
                      .+..|+....++-.|++-|+.+..+..+..+ .+.+.|+.        ..|+|-++..|.-.|.+-..  ...   +...
T Consensus       482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~  560 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYK  560 (776)
T ss_pred             EEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcc
Confidence            4556666777888899999999999988766 66776643        45778888888777876332  111   1111


Q ss_pred             CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022303          191 GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS  262 (299)
Q Consensus       191 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~  262 (299)
                      +......+....+.++++++..|-|++||.--......+.+-...|..+..+.+ +++++.+ ...|-+-|++
T Consensus       561 tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         561 TKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             ccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence            111112244455677999999999999996543334445566778999998877 6655554 4567777764

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.93  E-value=0.89  Score=39.22  Aligned_cols=137  Identities=14%  Similarity=0.174  Sum_probs=84.6

Q ss_pred             EEEEEeCCCcEEEEecCCce-----eEEEecCCCceeEEEEec-----CCCEEEEEcCCeEEEEecCCce----------
Q 022303          124 LILTGVGDKVMRLWSLEGYK-----CVEEYSLPNAASLVDFDF-----DESKIVGLIGTRICIWRRNGLR----------  183 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~-----~~~~l~~~~d~~i~v~d~~~~~----------  183 (299)
                      .++.||..|.++|++.....     .+.+.+...++..+...+     +...|+.-.-..+.+|.+....          
T Consensus        39 ~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~  118 (418)
T PF14727_consen   39 KIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQ  118 (418)
T ss_pred             EEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEE
Confidence            89999999999999986432     444555556666655432     3344557777788888873211          


Q ss_pred             --eeeeccCCccceeeeeccCC-----CeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCc
Q 022303          184 --SVFPSREGTFMKGLCMRYFD-----PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS  255 (299)
Q Consensus       184 --~~~~~~~~~~~~~~~~~~~~-----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~  255 (299)
                        ..+..+-.....-+++-+.+     +.++.-+.||.+.+|+-+.......+.. ---...+.|.+. +.+++++.+..
T Consensus       119 L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~  197 (418)
T PF14727_consen  119 LELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWT  197 (418)
T ss_pred             EEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCcee
Confidence              12222222222233444443     3388889999999999875443333322 222344667777 77888888888


Q ss_pred             EEEEeC
Q 022303          256 IAISGL  261 (299)
Q Consensus       256 i~iwd~  261 (299)
                      |..|..
T Consensus       198 l~~Yky  203 (418)
T PF14727_consen  198 LECYKY  203 (418)
T ss_pred             EEEecH
Confidence            888765

>PHA02713 hypothetical protein; Provisional

Probab=95.89  E-value=0.23  Score=44.81  Aligned_cols=141  Identities=10%  Similarity=-0.010  Sum_probs=72.1

Q ss_pred             EEEEEeCCC-----cEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcC-----------------------Ce
Q 022303          124 LILTGVGDK-----VMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIG-----------------------TR  173 (299)
Q Consensus       124 ~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d-----------------------~~  173 (299)
                      ..+.||.++     ++..||..+.+....-..+.+... ....-+++..+ |+.+                       ..
T Consensus       354 IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (557)
T PHA02713        354 IYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNK  433 (557)
T ss_pred             EEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccce
Confidence            455566553     477888877654332222222111 11223555555 5543                       25


Q ss_pred             EEEEecCCceee-eecc-CCccceeeeeccCCCeEEEecCC------CcEEEEEcCC---cceeeeccccCCceeEEEeC
Q 022303          174 ICIWRRNGLRSV-FPSR-EGTFMKGLCMRYFDPEAVVGCED------GTARVFDMYS---RKCSQIIRMHCAPVTSLSLS  242 (299)
Q Consensus       174 i~v~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~---~~~~~~~~~~~~~i~~~~~~  242 (299)
                      +..||..+.+-. .... ..... .-+...++...+.|+.+      ..+..||+.+   .+.+..+..... ...++..
T Consensus       434 ve~YDP~td~W~~v~~m~~~r~~-~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-~~~~~~~  511 (557)
T PHA02713        434 VIRYDTVNNIWETLPNFWTGTIR-PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-ALHTILH  511 (557)
T ss_pred             EEEECCCCCeEeecCCCCccccc-CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-cceeEEE
Confidence            778888876411 1111 11111 11222334445556643      2367899876   334444433222 2334444


Q ss_pred             CCCeEEEEeCCC--cEEEEeCCCCce
Q 022303          243 EDQLIISGSSLG--SIAISGLSSDQR  266 (299)
Q Consensus       243 ~~~~l~~~~~dg--~i~iwd~~~~~~  266 (299)
                      .+++.++|+.++  ++..||..+++-
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYTYEW  537 (557)
T ss_pred             CCEEEEEeeecceeehhhcCcccccc
Confidence            557888999888  778888877653

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=95.89  E-value=0.009  Score=34.02  Aligned_cols=44  Identities=30%  Similarity=0.472  Sum_probs=36.7

Q ss_pred             hhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHH
Q 022303           23 TIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQL   66 (299)
Q Consensus        23 ~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~   66 (299)
                      .+..+|.+...+|+.+++..+...+..+|+.|+.++.+...|..
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~   45 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKK   45 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHH
Confidence            46679999999999999999999999999999999987777754

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.88  E-value=0.36  Score=37.55  Aligned_cols=93  Identities=15%  Similarity=0.170  Sum_probs=64.4

Q ss_pred             EEEecCCCEEE--EEcCCeEEEEe--cCCce-----eeeeccC-----CccceeeeeccCCCeEEEecCCCcEEEEEcCC
Q 022303          157 VDFDFDESKIV--GLIGTRICIWR--RNGLR-----SVFPSRE-----GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS  222 (299)
Q Consensus       157 ~~~~~~~~~l~--~~~d~~i~v~d--~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  222 (299)
                      ++|+.+.+.+.  -+.+-+|.-||  ..++.     .++....     ......+++...+...++.-..++|...|+.+
T Consensus       163 l~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t  242 (310)
T KOG4499|consen  163 LAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTT  242 (310)
T ss_pred             ccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCC
Confidence            78887777766  55566787777  44432     2332222     22223456666677777788889999999999


Q ss_pred             cceeeeccccCCceeEEEeC-CC-CeEEE
Q 022303          223 RKCSQIIRMHCAPVTSLSLS-ED-QLIIS  249 (299)
Q Consensus       223 ~~~~~~~~~~~~~i~~~~~~-~~-~~l~~  249 (299)
                      |+.+.++.-....|++++|- ++ ..+.+
T Consensus       243 GK~L~eiklPt~qitsccFgGkn~d~~yv  271 (310)
T KOG4499|consen  243 GKILLEIKLPTPQITSCCFGGKNLDILYV  271 (310)
T ss_pred             CcEEEEEEcCCCceEEEEecCCCccEEEE
Confidence            99999998888889999997 54 44333

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.87  E-value=0.11  Score=40.57  Aligned_cols=69  Identities=14%  Similarity=0.091  Sum_probs=49.2

Q ss_pred             CeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEe---------------cCCCceeEEEEecCCCEEEEEcCCeEEEEe
Q 022303          114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEY---------------SLPNAASLVDFDFDESKIVGLIGTRICIWR  178 (299)
Q Consensus       114 ~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d  178 (299)
                      ++..+...+.+|+.-+.+|.+++||+.+++.+..-               .....+..+.++.+|.-++...+|..+.|+
T Consensus        14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~   93 (219)
T PF07569_consen   14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS   93 (219)
T ss_pred             ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence            44445556669999999999999999998765432               112333447778888877777778888888


Q ss_pred             cCCc
Q 022303          179 RNGL  182 (299)
Q Consensus       179 ~~~~  182 (299)
                      ..-.
T Consensus        94 ~~L~   97 (219)
T PF07569_consen   94 PDLG   97 (219)
T ss_pred             cccc
Confidence            7544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.81  E-value=0.029  Score=43.08  Aligned_cols=126  Identities=12%  Similarity=0.015  Sum_probs=74.3

Q ss_pred             EEEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceee-eccccCCceeEEEeC-CC
Q 022303          167 VGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ-IIRMHCAPVTSLSLS-ED  244 (299)
Q Consensus       167 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~-~~  244 (299)
                      +.+.++.|.-++++..+.......-... ...+.-.+..++.|+.+|.|.+|.....-.+. .+......|-++.-. .+
T Consensus        35 ~~sa~~~v~~~~~~k~k~s~rse~~~~e-~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~  113 (238)
T KOG2444|consen   35 ATSADGLVRERKVRKHKESCRSERFIDE-GQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRD  113 (238)
T ss_pred             cccCCcccccchhhhhhhhhhhhhhhhc-ceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccc
Confidence            3777888888887654321111100000 12233345568999999999999887322211 111222333333222 22


Q ss_pred             -CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          245 -QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       245 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                       .+..+++.||.|+.|++.-++.+.....|... ++..+..+..+++++.+
T Consensus       114 ~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~-~~e~~ivv~sd~~i~~a  163 (238)
T KOG2444|consen  114 SSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE-SGEELIVVGSDEFLKIA  163 (238)
T ss_pred             cceeEEeccCCceeeeccccCceeeeeccccCC-CcceeEEecCCceEEee
Confidence             57888999999999999888887777666622 56666666666666654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.70  E-value=0.064  Score=30.33  Aligned_cols=31  Identities=23%  Similarity=0.313  Sum_probs=26.4

Q ss_pred             CCCceeEEEEecCCCEEE-EEcCCeEEEEecC
Q 022303          150 LPNAASLVDFDFDESKIV-GLIGTRICIWRRN  180 (299)
Q Consensus       150 ~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~  180 (299)
                      ....+..++|+|...+++ ++.+|.|.+|.++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            344566799999999999 9999999999984

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.69  E-value=1.3  Score=38.48  Aligned_cols=108  Identities=9%  Similarity=0.000  Sum_probs=65.3

Q ss_pred             EEEecCCCEEE-E-EcCC----eEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecC-----------CCcEEEEE
Q 022303          157 VDFDFDESKIV-G-LIGT----RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-----------DGTARVFD  219 (299)
Q Consensus       157 ~~~~~~~~~l~-~-~~d~----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-----------d~~i~iwd  219 (299)
                      ..++|++++++ + +.+|    .++++|+.+++..-..........++|..++..++-...           ...|..|.
T Consensus       129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~  208 (414)
T PF02897_consen  129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK  208 (414)
T ss_dssp             EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred             eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence            77899999988 3 4444    699999999865443333332222688888777544322           22378888


Q ss_pred             cCCccee--eeccccCC-c-eeEEEeCCC-CeEEEEe-CC---CcEEEEeCCCC
Q 022303          220 MYSRKCS--QIIRMHCA-P-VTSLSLSED-QLIISGS-SL---GSIAISGLSSD  264 (299)
Q Consensus       220 ~~~~~~~--~~~~~~~~-~-i~~~~~~~~-~~l~~~~-~d---g~i~iwd~~~~  264 (299)
                      +.+....  ..+..... . ...+..+++ ++++..+ ..   ..+.+.|+..+
T Consensus       209 ~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  209 LGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             TTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             CCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            8765432  33332222 2 567888888 7655433 32   34788888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.65  E-value=1.2  Score=40.40  Aligned_cols=148  Identities=9%  Similarity=0.029  Sum_probs=79.2

Q ss_pred             EEecCC-EEEEEeCC------CcEEEEecCCceeEEEecCCCceeEEEE-ecCCCEEE-EEcCC-----eEEEEecCCce
Q 022303          118 CRMKRG-LILTGVGD------KVMRLWSLEGYKCVEEYSLPNAASLVDF-DFDESKIV-GLIGT-----RICIWRRNGLR  183 (299)
Q Consensus       118 ~~~~~~-~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~-~~~d~-----~i~v~d~~~~~  183 (299)
                      +..-++ ..++|+.|      .++..||..+.+....-.-......... .-+|.+.+ |+.||     ++-.||..+.+
T Consensus       328 ~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~  407 (571)
T KOG4441|consen  328 VAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK  407 (571)
T ss_pred             EEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCc
Confidence            444444 77888888      3577788877764432222222222222 22455545 88876     68888888775


Q ss_pred             eeeec-cCCccceeeeeccCCCeEEEecCCC------cEEEEEcCCcc--eeeeccccCCceeEEEeCCCCeEEEEeCCC
Q 022303          184 SVFPS-REGTFMKGLCMRYFDPEAVVGCEDG------TARVFDMYSRK--CSQIIRMHCAPVTSLSLSEDQLIISGSSLG  254 (299)
Q Consensus       184 ~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg  254 (299)
                      -.... ........-.....+...++||.++      .+..||..+.+  .+..+..... -..++.-.+.+.+.|+.|+
T Consensus       408 W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~-~~g~a~~~~~iYvvGG~~~  486 (571)
T KOG4441|consen  408 WTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS-GFGVAVLNGKIYVVGGFDG  486 (571)
T ss_pred             ccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc-cceEEEECCEEEEECCccC
Confidence            22211 1111111212333444466777443      46788887643  3333322122 2224444567888888776


Q ss_pred             c-----EEEEeCCCCce
Q 022303          255 S-----IAISGLSSDQR  266 (299)
Q Consensus       255 ~-----i~iwd~~~~~~  266 (299)
                      .     +..||..+.+-
T Consensus       487 ~~~~~~VE~ydp~~~~W  503 (571)
T KOG4441|consen  487 TSALSSVERYDPETNQW  503 (571)
T ss_pred             CCccceEEEEcCCCCce
Confidence            3     77788877653

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=95.58  E-value=0.018  Score=31.30  Aligned_cols=39  Identities=28%  Similarity=0.451  Sum_probs=34.6

Q ss_pred             CcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHH
Q 022303           27 LNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQ   65 (299)
Q Consensus        27 ~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~   65 (299)
                      +|.+....|+.+++..+...+..+|+.|+.++....+|.
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~   39 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF   39 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            578889999999999999999999999999998666664

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.45  E-value=0.084  Score=49.44  Aligned_cols=96  Identities=22%  Similarity=0.240  Sum_probs=67.0

Q ss_pred             CEEE-EEcCCeEEEEecCCcee--eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEE
Q 022303          164 SKIV-GLIGTRICIWRRNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS  240 (299)
Q Consensus       164 ~~l~-~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~  240 (299)
                      ..++ ++..|.+-..|..+...  ....+.......++++.++..++.|-.+|.|.+||...++.++.+..+..+.+.+-
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi  179 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI  179 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence            3455 88888888888876532  22222222333568888899999999999999999999999888876665555544


Q ss_pred             eC---CC-CeEEEEeCCCcEEEEeC
Q 022303          241 LS---ED-QLIISGSSLGSIAISGL  261 (299)
Q Consensus       241 ~~---~~-~~l~~~~~dg~i~iwd~  261 (299)
                      +.   .+ ..++++...|.  +|.+
T Consensus       180 ~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  180 FVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEeCCCcEEEEccCCCc--eEEE
Confidence            33   33 66888877776  5543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.33  E-value=0.055  Score=50.57  Aligned_cols=96  Identities=17%  Similarity=0.188  Sum_probs=65.2

Q ss_pred             eeccCCCeEEEecCCCcEEEEEcCCc-ce-eeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccC
Q 022303          198 CMRYFDPEAVVGCEDGTARVFDMYSR-KC-SQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTD  274 (299)
Q Consensus       198 ~~~~~~~~l~s~~~d~~i~iwd~~~~-~~-~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  274 (299)
                      +....+..++.|+..|.+-..|.... .. .+.. ...++|++++|+.+ .+++.|-.+|.|.+||+..++.++.+..+.
T Consensus        94 s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne-~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~  172 (1206)
T KOG2079|consen   94 SSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNE-RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHG  172 (1206)
T ss_pred             eeeeeeeeEEEEcCchhhhhhhhhcccchhhcCC-ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecC
Confidence            34444455788888899888887742 11 1111 34678999999998 888899999999999999998888876655


Q ss_pred             CC-CcEEEEEccCCCCeEEee
Q 022303          275 CT-GHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       275 ~~-~~i~~~~~s~~g~~l~s~  294 (299)
                      .+ ..|-.+.+..++..++++
T Consensus       173 ap~t~vi~v~~t~~nS~llt~  193 (1206)
T KOG2079|consen  173 APVTGVIFVGRTSQNSKLLTS  193 (1206)
T ss_pred             CccceEEEEEEeCCCcEEEEc
Confidence            41 133334444455545543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.32  E-value=0.68  Score=38.25  Aligned_cols=115  Identities=17%  Similarity=0.085  Sum_probs=68.0

Q ss_pred             EEecC-CceeEEEecCCCce-eEEEEecCCCEEE-EE-cCCeEEEEecCC--c----e--eeeeccCCccceeeeeccCC
Q 022303          136 LWSLE-GYKCVEEYSLPNAA-SLVDFDFDESKIV-GL-IGTRICIWRRNG--L----R--SVFPSREGTFMKGLCMRYFD  203 (299)
Q Consensus       136 iwd~~-~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~-~d~~i~v~d~~~--~----~--~~~~~~~~~~~~~~~~~~~~  203 (299)
                      +|-+. .+..+..+..+-.. ..++|+||++.++ +- ..+.|+-|++..  .    .  .............+++..++
T Consensus       145 lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG  224 (307)
T COG3386         145 LYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG  224 (307)
T ss_pred             EEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC
Confidence            44444 34444444432222 2399999998877 43 347888887752  1    1  11111112222345666667


Q ss_pred             CeEEEecCCC-cEEEEEcCCcceeeeccccCCceeEEEeC-CC-C-eEEEEe
Q 022303          204 PEAVVGCEDG-TARVFDMYSRKCSQIIRMHCAPVTSLSLS-ED-Q-LIISGS  251 (299)
Q Consensus       204 ~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~i~~~~~~-~~-~-~l~~~~  251 (299)
                      ...+++..+| .|.+|+.+ ++.+..+......+++++|- |+ + +++++.
T Consensus       225 ~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         225 NLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            6654444443 89999998 99998887665778888887 44 3 444443

>PHA03098 kelch-like protein; Provisional

Probab=95.32  E-value=1.1  Score=40.49  Aligned_cols=144  Identities=10%  Similarity=0.017  Sum_probs=67.3

Q ss_pred             cCCEEEEEeCCC------cEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcC-----CeEEEEecCCceeee-
Q 022303          121 KRGLILTGVGDK------VMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIG-----TRICIWRRNGLRSVF-  186 (299)
Q Consensus       121 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d-----~~i~v~d~~~~~~~~-  186 (299)
                      .+..++.|+.++      .+..||..+.+....-..+.+... .....+++..+ |+.+     ..+..||..+..-.. 
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE  373 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence            333566666543      567888877765432221211111 12223555555 6654     357788887664111 


Q ss_pred             eccCCccceeeeeccCCCeEEEecCC------CcEEEEEcCCcc--eeeeccccCCceeEEEeCCCCeEEEEeCCC----
Q 022303          187 PSREGTFMKGLCMRYFDPEAVVGCED------GTARVFDMYSRK--CSQIIRMHCAPVTSLSLSEDQLIISGSSLG----  254 (299)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg----  254 (299)
                      ...........+....+..++.|+.+      +.+..||+.+.+  .+..+..... -.+++...+.+++.|+.++    
T Consensus       374 ~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~  452 (534)
T PHA03098        374 PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-GGCAIYHDGKIYVIGGISYIDNI  452 (534)
T ss_pred             CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-CceEEEECCEEEEECCccCCCCC
Confidence            11111111111222334445556632      357888887543  2222211111 1223333446666666432    


Q ss_pred             ----cEEEEeCCCCc
Q 022303          255 ----SIAISGLSSDQ  265 (299)
Q Consensus       255 ----~i~iwd~~~~~  265 (299)
                          .+.+||..+++
T Consensus       453 ~~~~~v~~yd~~~~~  467 (534)
T PHA03098        453 KVYNIVESYNPVTNK  467 (534)
T ss_pred             cccceEEEecCCCCc
Confidence                38889987764

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.20  E-value=2.4  Score=39.86  Aligned_cols=148  Identities=11%  Similarity=0.056  Sum_probs=87.8

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCcee-------------EEEEec---CCCEEEEEc----------CCeEEEE
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-------------LVDFDF---DESKIVGLI----------GTRICIW  177 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------~~~~~~---~~~~l~~~~----------d~~i~v~  177 (299)
                      .++.++.|+.+.-.|.++|+.+..+..+..+-             ...-.|   ++..++++.          +|.|+-+
T Consensus       262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~  341 (764)
T TIGR03074       262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF  341 (764)
T ss_pred             EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence            78889999999999999999987765322110             011111   333444532          5789999


Q ss_pred             ecCCceeeeeccCC------------------ccc-eeeeeccCCCeEEEe------------------cCCCcEEEEEc
Q 022303          178 RRNGLRSVFPSREG------------------TFM-KGLCMRYFDPEAVVG------------------CEDGTARVFDM  220 (299)
Q Consensus       178 d~~~~~~~~~~~~~------------------~~~-~~~~~~~~~~~l~s~------------------~~d~~i~iwd~  220 (299)
                      |.++++.......+                  ... ...++.+....++.+                  ...+.|.-.|.
T Consensus       342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~  421 (764)
T TIGR03074       342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA  421 (764)
T ss_pred             ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence            99988754432211                  000 011222222222211                  12355777889


Q ss_pred             CCcceeeeccc-cCC---------ce-eEEEeCCC---CeEEEEeCCCcEEEEeCCCCceEEEee
Q 022303          221 YSRKCSQIIRM-HCA---------PV-TSLSLSED---QLIISGSSLGSIAISGLSSDQRVATLR  271 (299)
Q Consensus       221 ~~~~~~~~~~~-~~~---------~i-~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~  271 (299)
                      ++|+....++. |.+         ++ ..+....+   ..++.++.+|.+.++|.++|+.+...+
T Consensus       422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            99999887764 211         11 12322111   379999999999999999999886653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.01  E-value=1.8  Score=39.43  Aligned_cols=132  Identities=9%  Similarity=0.025  Sum_probs=73.3

Q ss_pred             eeEEEEecCCCEEE-EE------cCC--eEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCC------------
Q 022303          154 ASLVDFDFDESKIV-GL------IGT--RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED------------  212 (299)
Q Consensus       154 ~~~~~~~~~~~~l~-~~------~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d------------  212 (299)
                      +...+++|+++.++ ..      .|.  .+.+++.......+..  +.....-.|++++..+++....            
T Consensus       352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~  429 (591)
T PRK13616        352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE--GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT  429 (591)
T ss_pred             cccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec--CCCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence            33488999999988 33      133  5666665433222211  1112234788887765554322            


Q ss_pred             CcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEE---EeCCCCc-eE---EEeeccCCCCcEEEEEc
Q 022303          213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI---SGLSSDQ-RV---ATLRSTDCTGHIICLMY  284 (299)
Q Consensus       213 ~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~i---wd~~~~~-~~---~~~~~~~~~~~i~~~~~  284 (299)
                      +.+.+.+++.++...   .....|..+.|+|| ..++... ++.|.+   -....|+ .+   ..+..... ..+.++.|
T Consensus       430 gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~-~~~~~l~W  504 (591)
T PRK13616        430 GQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG-DTAVSLDW  504 (591)
T ss_pred             ceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC-CccccceE
Confidence            334444444433322   22456999999999 6666554 477777   4444454 11   11222111 14688999


Q ss_pred             cCCCCeEE
Q 022303          285 PQFLHMLF  292 (299)
Q Consensus       285 s~~g~~l~  292 (299)
                      ..++.+++
T Consensus       505 ~~~~~L~V  512 (591)
T PRK13616        505 RTGDSLVV  512 (591)
T ss_pred             ecCCEEEE
Confidence            99998654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.63  E-value=2.3  Score=36.31  Aligned_cols=135  Identities=16%  Similarity=0.071  Sum_probs=68.6

Q ss_pred             ceeEEEEecCCCEEEEEc------------CC-eEEEEecCCc--e----eeeeccCCccceeeeeccCCCeEEEecCCC
Q 022303          153 AASLVDFDFDESKIVGLI------------GT-RICIWRRNGL--R----SVFPSREGTFMKGLCMRYFDPEAVVGCEDG  213 (299)
Q Consensus       153 ~~~~~~~~~~~~~l~~~~------------d~-~i~v~d~~~~--~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  213 (299)
                      .++.++|.++++++++..            .+ .|.+++-.+.  .    .++..... ....+++.+++  ++++....
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~-~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELS-MVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCC-CccceeEecCC--EEEeCCCe
Confidence            455688888888777532            22 6766654322  1    12211111 11234555555  55555443


Q ss_pred             cEEEEEcCC-------ccee-eeccc----cCCceeEEEeCCC-CeEEEEeCC-------------------CcEEEEeC
Q 022303          214 TARVFDMYS-------RKCS-QIIRM----HCAPVTSLSLSED-QLIISGSSL-------------------GSIAISGL  261 (299)
Q Consensus       214 ~i~iwd~~~-------~~~~-~~~~~----~~~~i~~~~~~~~-~~l~~~~~d-------------------g~i~iwd~  261 (299)
                      ..++.|...       .+.+ ..+..    +......+++.|| .+.++-+..                   |.|.-++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            333334421       1111 22322    1344778999998 655544421                   34555565


Q ss_pred             CCCceEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022303          262 SSDQRVATLRSTDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       262 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      ..++ +..+.....  ....++|+|+|+++++
T Consensus       172 dg~~-~e~~a~G~r--np~Gl~~d~~G~l~~t  200 (367)
T TIGR02604       172 DGGK-LRVVAHGFQ--NPYGHSVDSWGDVFFC  200 (367)
T ss_pred             CCCe-EEEEecCcC--CCccceECCCCCEEEE
Confidence            5443 233322222  5688999999988775

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.54  E-value=4.1  Score=38.58  Aligned_cols=159  Identities=14%  Similarity=0.134  Sum_probs=93.6

Q ss_pred             cEEEEecCCceeEEEecCCC--ce---eEEEEecC-CCEEE-EEc----------CCeEEEEecCCceeeeeccCCc-cc
Q 022303          133 VMRLWSLEGYKCVEEYSLPN--AA---SLVDFDFD-ESKIV-GLI----------GTRICIWRRNGLRSVFPSREGT-FM  194 (299)
Q Consensus       133 ~i~iwd~~~~~~~~~~~~~~--~~---~~~~~~~~-~~~l~-~~~----------d~~i~v~d~~~~~~~~~~~~~~-~~  194 (299)
                      .++++|-+|.+.+...+...  .+   +++.|..| +.+++ |+.          .|.|.+|...........++.. ..
T Consensus       751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G  830 (1096)
T KOG1897|consen  751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG  830 (1096)
T ss_pred             EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence            46777877777666555332  22   22446666 44554 543          4678888776622111111111 11


Q ss_pred             eeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC--CceEEEee
Q 022303          195 KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS--DQRVATLR  271 (299)
Q Consensus       195 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~--~~~~~~~~  271 (299)
                      .+.++...+..+++ +-+..|++|+..+.+.++.-..+..++..+...-. ..+++|..-+++.+...+.  |.....-+
T Consensus       831 av~aL~~fngkllA-~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr  909 (1096)
T KOG1897|consen  831 AVYALVEFNGKLLA-GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR  909 (1096)
T ss_pred             ceeehhhhCCeEEE-ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh
Confidence            13455444444443 44678999999988777766677888888888766 7899999988887765543  33332222


Q ss_pred             ccCCCCcEEEEEccCCCCeEEe
Q 022303          272 STDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       272 ~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      .-. +...+++.+-.+..|+.+
T Consensus       910 D~~-p~Wmtaveil~~d~ylga  930 (1096)
T KOG1897|consen  910 DYN-PNWMTAVEILDDDTYLGA  930 (1096)
T ss_pred             hhC-ccceeeEEEecCceEEee
Confidence            211 116777777666666554

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.51  E-value=2.7  Score=35.89  Aligned_cols=150  Identities=13%  Similarity=0.017  Sum_probs=88.1

Q ss_pred             cCCEEEEEeCCCcEEEEecCCceeEEEecCCC--ceeE-EEEecCCCEEEEEcCCeEEEEecCCceeeeeccCCc-ccee
Q 022303          121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPN--AASL-VDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGT-FMKG  196 (299)
Q Consensus       121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~-~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~  196 (299)
                      .++.++.+..+|.|.-.|..+++.+.......  .... -.+..+|+.++++.++.++.+|..++.......... ....
T Consensus        67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~  146 (370)
T COG1520          67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA  146 (370)
T ss_pred             eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence            56678888999999999999998765444332  2222 222237887779999999999997665444332222 1111


Q ss_pred             eeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccC---CceeEEEeCCCCeEEEEeC--CCcEEEEeCCCCceEEEe
Q 022303          197 LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC---APVTSLSLSEDQLIISGSS--LGSIAISGLSSDQRVATL  270 (299)
Q Consensus       197 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~i~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~  270 (299)
                      -.....+..++.++.++.+...|..+++.+.......   ..+..-....+..+..+..  ++.+.-.|..+|+.....
T Consensus       147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~  225 (370)
T COG1520         147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQ  225 (370)
T ss_pred             cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeee
Confidence            1111223334555578899999988888876653211   1111100112234555555  566777788788776654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.46  E-value=1.6  Score=39.73  Aligned_cols=88  Identities=13%  Similarity=-0.005  Sum_probs=60.8

Q ss_pred             EEecCCCcEEEEEcCCcceeeecc-ccCCceeEEEeC--CC-CeEEEEeCCCcEEEEeCC---------CCceEEEeec-
Q 022303          207 VVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLS--ED-QLIISGSSLGSIAISGLS---------SDQRVATLRS-  272 (299)
Q Consensus       207 ~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~--~~-~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~-  272 (299)
                      ++-+....+.|||.+.+....+.. ...+.|.++.|.  |+ +.+++.+....|.++.-.         +-..++.+.. 
T Consensus        45 ~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~  124 (631)
T PF12234_consen   45 VVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDIS  124 (631)
T ss_pred             EEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEee
Confidence            334445679999999877543332 457889999997  66 788888888999998642         1224444432 


Q ss_pred             -cCCCCcEEEEEccCCCCeEEeee
Q 022303          273 -TDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       273 -~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                       +.. .+|.+..|.++|..+++++
T Consensus       125 ~~T~-h~Igds~Wl~~G~LvV~sG  147 (631)
T PF12234_consen  125 SHTP-HPIGDSIWLKDGTLVVGSG  147 (631)
T ss_pred             cCCC-CCccceeEecCCeEEEEeC
Confidence             221 2899999999999887655

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.33  E-value=0.89  Score=41.39  Aligned_cols=53  Identities=9%  Similarity=0.074  Sum_probs=40.0

Q ss_pred             eCCCcEEEEecCCceeEEEecCC-CceeEEEEecCCCEEEEEcCCeEEEEecCCc
Q 022303          129 VGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNGL  182 (299)
Q Consensus       129 ~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~  182 (299)
                      +.--.|+|+++. |+.+..+... ...+.+.|+.+..+|+...+|++++|+.-..
T Consensus        61 ~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge  114 (829)
T KOG2280|consen   61 SARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGE  114 (829)
T ss_pred             ccceeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchh
Confidence            344568888764 6766665543 4667799999999998999999999998654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.22  E-value=0.72  Score=40.12  Aligned_cols=132  Identities=17%  Similarity=0.098  Sum_probs=74.5

Q ss_pred             EEEecCCCEEE--EEcCCeEEEEecCCceee--eeccCCccceeeeeccCCCe-------EEEecCCCcEEEEEcCCcc-
Q 022303          157 VDFDFDESKIV--GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPE-------AVVGCEDGTARVFDMYSRK-  224 (299)
Q Consensus       157 ~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------l~s~~~d~~i~iwd~~~~~-  224 (299)
                      +-...+.++|+  +.....++-.|+..++.+  +..+...   ++.+.|....       -+.|-.+..|.-.|.+-.. 
T Consensus       473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv---vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN  549 (776)
T COG5167         473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV---VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN  549 (776)
T ss_pred             eeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc---eeecCCchhHHhcCccceEEeecccceEEecccccCC
Confidence            33344555555  555567777777766533  2222222   3344444221       3455556666666776432 


Q ss_pred             eeeeccccCCceeEEEeC-----CCCeEEEEeCCCcEEEEeCCCCceEEE-eeccCCCCcEEEEEccCCCCeEEeee
Q 022303          225 CSQIIRMHCAPVTSLSLS-----EDQLIISGSSLGSIAISGLSSDQRVAT-LRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       225 ~~~~~~~~~~~i~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      .+... ...+..+.-.|+     ...++|+|+..|.|++||.- |...++ +.+-..  .|..+..+.+|+++++.|
T Consensus       550 Ki~v~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~--aIk~idvta~Gk~ilaTC  622 (776)
T COG5167         550 KIKVV-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGD--AIKHIDVTANGKHILATC  622 (776)
T ss_pred             ceeee-eehhccccccccccccccCceEEEecCCCceeeehhh-cchhhhcCccccc--ceeeeEeecCCcEEEEee
Confidence            22221 122223333333     23799999999999999964 433333 333344  899999999999887765

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.74  E-value=0.4  Score=26.37  Aligned_cols=31  Identities=19%  Similarity=0.284  Sum_probs=25.7

Q ss_pred             CceeEEEeCCC----CeEEEEeCCCcEEEEeCCCC
Q 022303          234 APVTSLSLSED----QLIISGSSLGSIAISGLSSD  264 (299)
Q Consensus       234 ~~i~~~~~~~~----~~l~~~~~dg~i~iwd~~~~  264 (299)
                      +.|.++.|+|+    .+|+.+-.-|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            35889999975    48888888999999999953

It contains a characteristic DLL sequence motif.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.65  E-value=3.2  Score=37.78  Aligned_cols=141  Identities=12%  Similarity=0.036  Sum_probs=73.8

Q ss_pred             EEEEEeCC------CcEEEEecCCceeEEEecCCC--ceeEEEEecCCCEEEEEcC-C-----eEEEEecCCcee-eeec
Q 022303          124 LILTGVGD------KVMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIVGLIG-T-----RICIWRRNGLRS-VFPS  188 (299)
Q Consensus       124 ~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~d-~-----~i~v~d~~~~~~-~~~~  188 (299)
                      +++.|+.+      ..+..+|..+++....-..+.  ....+++..+--+++|+.+ |     ++..||..+.+- ....
T Consensus       287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~  366 (571)
T KOG4441|consen  287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAP  366 (571)
T ss_pred             EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCC
Confidence            66777766      367888888775544333222  2223444444223337777 3     788899887751 1111


Q ss_pred             cCCccceeeeeccCCCeEEEecCCCc-----EEEEEcCCcc--eeeeccccCCceeEEEeCCCCeEEEEeCCC------c
Q 022303          189 REGTFMKGLCMRYFDPEAVVGCEDGT-----ARVFDMYSRK--CSQIIRMHCAPVTSLSLSEDQLIISGSSLG------S  255 (299)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~s~~~d~~-----i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg------~  255 (299)
                      ........-.....+...++|+.||.     +-.||..+.+  .+..... ...-.+++...+.+.++|+.++      +
T Consensus       367 M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~s  445 (571)
T KOG4441|consen  367 MNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNS  445 (571)
T ss_pred             ccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCccccce
Confidence            11111111122233444778888865     6677776533  2222211 1111222223446777777554      5


Q ss_pred             EEEEeCCCCc
Q 022303          256 IAISGLSSDQ  265 (299)
Q Consensus       256 i~iwd~~~~~  265 (299)
                      +..||..+++
T Consensus       446 ve~YDP~t~~  455 (571)
T KOG4441|consen  446 VECYDPETNT  455 (571)
T ss_pred             EEEEcCCCCc
Confidence            6788887664

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.44  E-value=4.3  Score=34.48  Aligned_cols=172  Identities=10%  Similarity=-0.005  Sum_probs=82.8

Q ss_pred             cCC--EEEEEeCCC--cEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCc
Q 022303          121 KRG--LILTGVGDK--VMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGT  192 (299)
Q Consensus       121 ~~~--~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~  192 (299)
                      +++  +|+.+..||  .+.+.|+.+++..+--.+..... ...++++.+.++ .-.+..+.-.|+++.+  .++..+..-
T Consensus        45 ~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~  124 (386)
T PF14583_consen   45 DDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDW  124 (386)
T ss_dssp             TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTE
T ss_pred             CCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccc
Confidence            455  566666665  56777888988877666543323 367778888887 6667799999998875  344444443


Q ss_pred             ccee-eeeccCCCeEEE----------------------ecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC--CeE
Q 022303          193 FMKG-LCMRYFDPEAVV----------------------GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLI  247 (299)
Q Consensus       193 ~~~~-~~~~~~~~~l~s----------------------~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l  247 (299)
                      .... ...+.++..++-                      +--...|.-.|+.+|+....+ .....+..+.|+|.  .+|
T Consensus       125 ~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~-~~~~wlgH~~fsP~dp~li  203 (386)
T PF14583_consen  125 KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF-EDTDWLGHVQFSPTDPTLI  203 (386)
T ss_dssp             EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE-EESS-EEEEEEETTEEEEE
T ss_pred             ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE-ecCccccCcccCCCCCCEE
Confidence            3222 112233333211                      111233566677777765555 34667889999986  566


Q ss_pred             EEEeC---CC-cEEEEeCCC-CceEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022303          248 ISGSS---LG-SIAISGLSS-DQRVATLRSTDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       248 ~~~~~---dg-~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      +-|-+   +. .-|||-+++ +.....+..+.....+..=-|.|||..+.-
T Consensus       204 ~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  204 MFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             EEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred             EEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence            66554   22 135665543 333444433322213344456777776654

>PHA03098 kelch-like protein; Provisional

Probab=93.28  E-value=3.5  Score=37.21  Aligned_cols=141  Identities=13%  Similarity=0.076  Sum_probs=65.5

Q ss_pred             EEEEEeCC-----CcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcC------CeEEEEecCCceee-eecc
Q 022303          124 LILTGVGD-----KVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIG------TRICIWRRNGLRSV-FPSR  189 (299)
Q Consensus       124 ~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d------~~i~v~d~~~~~~~-~~~~  189 (299)
                      ..+.||.+     ..+..||..+.+....-..+.+... .....+++..+ |+.+      ..+..||+.+..-. ....
T Consensus       345 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~  424 (534)
T PHA03098        345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL  424 (534)
T ss_pred             EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC
Confidence            55566654     3467788776654332222221111 12223455544 5421      36888998876411 1111


Q ss_pred             CCccceeeeeccCCCeEEEecCC--------CcEEEEEcCCcc--eeeeccccCCceeEEEeCCCCeEEEEeCC-----C
Q 022303          190 EGTFMKGLCMRYFDPEAVVGCED--------GTARVFDMYSRK--CSQIIRMHCAPVTSLSLSEDQLIISGSSL-----G  254 (299)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~d-----g  254 (299)
                      ........+....+..++.|+.+        ..+.+||..+.+  .+.......... +++...+++++.|+.+     .
T Consensus       425 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~~~~~~~iyv~GG~~~~~~~~  503 (534)
T PHA03098        425 PISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA-SLCIFNNKIYVVGGDKYEYYIN  503 (534)
T ss_pred             CccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccc-eEEEECCEEEEEcCCcCCcccc
Confidence            11111111222334445556543        237888887643  222221111111 2222234667777654     4


Q ss_pred             cEEEEeCCCCc
Q 022303          255 SIAISGLSSDQ  265 (299)
Q Consensus       255 ~i~iwd~~~~~  265 (299)
                      .+.+||..+.+
T Consensus       504 ~v~~yd~~~~~  514 (534)
T PHA03098        504 EIEVYDDKTNT  514 (534)
T ss_pred             eeEEEeCCCCE
Confidence            68888887654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.21  E-value=2.1  Score=41.12  Aligned_cols=137  Identities=11%  Similarity=0.033  Sum_probs=83.3

Q ss_pred             eEEEEecCCCEEE---EEcCCeEEEEecCCce-------eeeeccC-----CccceeeeeccCCCe-EEEecCCCcEEEE
Q 022303          155 SLVDFDFDESKIV---GLIGTRICIWRRNGLR-------SVFPSRE-----GTFMKGLCMRYFDPE-AVVGCEDGTARVF  218 (299)
Q Consensus       155 ~~~~~~~~~~~l~---~~~d~~i~v~d~~~~~-------~~~~~~~-----~~~~~~~~~~~~~~~-l~s~~~d~~i~iw  218 (299)
                      +.+...+|....+   .+.+-.|+.||++.-.       ..+..+.     ......+.|+|.-+. .+....|+.|++.
T Consensus       104 ~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~  183 (1405)
T KOG3630|consen  104 VIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVK  183 (1405)
T ss_pred             eEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhh
Confidence            3455566766543   3334488999997532       1111110     111112345555443 5667778888887


Q ss_pred             EcCCcce-eeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCC--CCcEEEEEccCCCCeEEe
Q 022303          219 DMYSRKC-SQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDC--TGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       219 d~~~~~~-~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~i~~~~~s~~g~~l~s  293 (299)
                      .+..... +..+ ......++++|+|. +.++.|-..|++.-|... ++....+.+...  ...|.+++|-....+|+.
T Consensus       184 ~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  184 STKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             hhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            7654322 2233 33456899999998 899999999999999863 554444433221  127999999877777664

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.20  E-value=4.7  Score=34.18  Aligned_cols=161  Identities=14%  Similarity=0.062  Sum_probs=85.0

Q ss_pred             cEEEEecCCceeEE-Eec----CCCc-eeEEEEecCCC-EEE--EEcCC---eEEEEecCCcee--eee-ccCCcc--ce
Q 022303          133 VMRLWSLEGYKCVE-EYS----LPNA-ASLVDFDFDES-KIV--GLIGT---RICIWRRNGLRS--VFP-SREGTF--MK  195 (299)
Q Consensus       133 ~i~iwd~~~~~~~~-~~~----~~~~-~~~~~~~~~~~-~l~--~~~d~---~i~v~d~~~~~~--~~~-~~~~~~--~~  195 (299)
                      .+.|+|+.+++... ...    .... ...+.|.++++ +++  ...+.   .+.++|..++..  +.. ...+-+  ..
T Consensus       159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~  238 (353)
T PF00930_consen  159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD  238 (353)
T ss_dssp             EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred             EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence            35667888776532 111    2222 33499999998 444  44443   567778866532  221 111111  11


Q ss_pred             eeeec-cCCCe-EEEecCCCcEE--EEEcCCcceeeeccccCCceeE-EEeCCC--CeEEEEeCCC----cEEEEeCCCC
Q 022303          196 GLCMR-YFDPE-AVVGCEDGTAR--VFDMYSRKCSQIIRMHCAPVTS-LSLSED--QLIISGSSLG----SIAISGLSSD  264 (299)
Q Consensus       196 ~~~~~-~~~~~-l~s~~~d~~i~--iwd~~~~~~~~~~~~~~~~i~~-~~~~~~--~~l~~~~~dg----~i~iwd~~~~  264 (299)
                      ...+. +.+.. +.....+|.-+  +++...+. ...+....-.|.. +.++++  .+++++..++    .|..-++..+
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~  317 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG  317 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence            22332 44444 44444666644  44555444 3455444555644 566666  4555666533    4555566534


Q ss_pred             ceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          265 QRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       265 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ..+..+.....  .-..+.|||+|++++..+.
T Consensus       318 ~~~~~LT~~~~--~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  318 GEPKCLTCEDG--DHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             TEEEESSTTSS--TTEEEEE-TTSSEEEEEEE
T ss_pred             CCeEeccCCCC--CceEEEECCCCCEEEEEEc
Confidence            55677766665  2269999999999886543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.16  E-value=4.8  Score=34.21  Aligned_cols=152  Identities=12%  Similarity=0.014  Sum_probs=73.6

Q ss_pred             ecCCceeEEEecCCCcee------EEEEecCCCEEE-EEc-CC--eEEEEecCCceee-eeccCCccceeeeeccCCCeE
Q 022303          138 SLEGYKCVEEYSLPNAAS------LVDFDFDESKIV-GLI-GT--RICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEA  206 (299)
Q Consensus       138 d~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~-~~~-d~--~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~l  206 (299)
                      |..||..+..+..+....      .-+|.++|+.|+ ++. +|  .++..|+.+++.. ++...+.......+++.+..+
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~   95 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL   95 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence            566777776665443322      246788998877 444 44  7888888888633 222222222234667777776


Q ss_pred             EEecCCCcEEEEEcCCcceeeeccccCCceeEEEeC--CC-CeEEEEe----------------------CCCcEEEEeC
Q 022303          207 VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS--ED-QLIISGS----------------------SLGSIAISGL  261 (299)
Q Consensus       207 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~--~~-~~l~~~~----------------------~dg~i~iwd~  261 (299)
                      +-...+..+.-.|+++.+....+......+-...|.  .| ..++-.-                      -...|.-.|+
T Consensus        96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl  175 (386)
T PF14583_consen   96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL  175 (386)
T ss_dssp             EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred             EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence            544455688888999887655555445544434443  33 3322211                      1224666678


Q ss_pred             CCCceEEEeeccCCCCcEEEEEccCCCCeEE
Q 022303          262 SSDQRVATLRSTDCTGHIICLMYPQFLHMLF  292 (299)
Q Consensus       262 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  292 (299)
                      .+|+.-..+....   .+..+.|+|...-++
T Consensus       176 ~tG~~~~v~~~~~---wlgH~~fsP~dp~li  203 (386)
T PF14583_consen  176 KTGERKVVFEDTD---WLGHVQFSPTDPTLI  203 (386)
T ss_dssp             TT--EEEEEEESS----EEEEEEETTEEEEE
T ss_pred             CCCceeEEEecCc---cccCcccCCCCCCEE
Confidence            8877655554433   788888998654443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.90  E-value=0.027  Score=48.08  Aligned_cols=138  Identities=12%  Similarity=0.124  Sum_probs=91.0

Q ss_pred             ceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeecc
Q 022303          153 AASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIR  230 (299)
Q Consensus       153 ~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~  230 (299)
                      .++...|-+.+..++ ++.+..+..||-.+....-....+... -++|.-.++. ++.+-..+.+.+||+.+... +++.
T Consensus        36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~al-dm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE  113 (615)
T KOG2247|consen   36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKAL-DMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLE  113 (615)
T ss_pred             ccceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHh-hhhhccccchhhhhhhcCCCeeechhhhhhH-HHHh
Confidence            344567777776677 888888889987665433222222222 2455555555 55667788999999985432 2222


Q ss_pred             -ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          231 -MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       231 -~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                       +....-.-+.|++. ..++.+...|.+.|++-.+.+.+.....|..  .++++++.+.+..+..+
T Consensus       114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~R--Rgtq~av~lEd~vil~d  177 (615)
T KOG2247|consen  114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQR--RGTQIAVTLEDYVILCD  177 (615)
T ss_pred             ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhccccc--ceeEEEecccceeeecC
Confidence             11111222678888 8888999999999999988776666655666  88999999887655443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.69  E-value=0.42  Score=45.42  Aligned_cols=97  Identities=10%  Similarity=-0.064  Sum_probs=61.1

Q ss_pred             eeeccCCCe--EEEecCCCcEEEEEcCCcceee-----ecc------ccCCceeEEEeCCC--CeEEEEeCCCcEEEEeC
Q 022303          197 LCMRYFDPE--AVVGCEDGTARVFDMYSRKCSQ-----IIR------MHCAPVTSLSLSED--QLIISGSSLGSIAISGL  261 (299)
Q Consensus       197 ~~~~~~~~~--l~s~~~d~~i~iwd~~~~~~~~-----~~~------~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~  261 (299)
                      +.+.++...  ++..+.+-.|..||+++.....     .+.      .......++.|+|.  ...++...|+.|++..+
T Consensus       106 ~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~  185 (1405)
T KOG3630|consen  106 FVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKST  185 (1405)
T ss_pred             EEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhh
Confidence            344445444  3344445578899988643211     111      12334577888887  56778888999999887


Q ss_pred             CCCc-eEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          262 SSDQ-RVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       262 ~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      .... .+..+... .  ..++++|+|.|+.++.|--
T Consensus       186 ~~~~~~v~s~p~t-~--~~Tav~WSprGKQl~iG~n  218 (1405)
T KOG3630|consen  186 KQLAQNVTSFPVT-N--SQTAVLWSPRGKQLFIGRN  218 (1405)
T ss_pred             hhhhhhhcccCcc-c--ceeeEEeccccceeeEecC
Confidence            6432 22332222 2  6899999999999998743

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=92.21  E-value=3.9  Score=38.48  Aligned_cols=67  Identities=12%  Similarity=0.084  Sum_probs=47.1

Q ss_pred             CeEEEecCCCcEEEEEcCCcceeeeccccCCcee-------------EEEeCC---CCeEEEEeC----------CCcEE
Q 022303          204 PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVT-------------SLSLSE---DQLIISGSS----------LGSIA  257 (299)
Q Consensus       204 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~-------------~~~~~~---~~~l~~~~~----------dg~i~  257 (299)
                      ..++.++.|+.+.-.|.++|+.+..+.. .+.|.             .+.-.|   +..+++|+.          +|.|+
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence            4688889999999999999999877632 22110             111223   245666643          68899


Q ss_pred             EEeCCCCceEEEee
Q 022303          258 ISGLSSDQRVATLR  271 (299)
Q Consensus       258 iwd~~~~~~~~~~~  271 (299)
                      -+|.++|+.+..+.
T Consensus       340 A~Da~TGkl~W~~~  353 (764)
T TIGR03074       340 AFDVNTGALVWAWD  353 (764)
T ss_pred             EEECCCCcEeeEEe
Confidence            99999999988775

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.19  E-value=5.4  Score=32.32  Aligned_cols=155  Identities=14%  Similarity=0.057  Sum_probs=91.1

Q ss_pred             ceeEEEecCCCceeEEEEecCCCEEE--EEcCC-eEEEEecCCceeeee--ccCC-ccceeeeeccCCCeEEEecC----
Q 022303          142 YKCVEEYSLPNAASLVDFDFDESKIV--GLIGT-RICIWRRNGLRSVFP--SREG-TFMKGLCMRYFDPEAVVGCE----  211 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~-~i~v~d~~~~~~~~~--~~~~-~~~~~~~~~~~~~~l~s~~~----  211 (299)
                      |+++.....+...--+.++|.-..-+  +=.-| ...++|..+.+....  ..++ +...--++++++.+|++.-.    
T Consensus        58 Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~  137 (366)
T COG3490          58 GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP  137 (366)
T ss_pred             CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCC
Confidence            44444444444334467777554433  33333 456788877653221  1111 11111268888888775432    


Q ss_pred             -CCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC-CeEEEEeC------------------CCcEEEEeCCCCceEEEe
Q 022303          212 -DGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSS------------------LGSIAISGLSSDQRVATL  270 (299)
Q Consensus       212 -d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~------------------dg~i~iwd~~~~~~~~~~  270 (299)
                       -|.|-+||.+.+ +.+.++..|.-....+.+.+| +.++.+..                  .-++.+.|..+|+++.+.
T Consensus       138 ~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh  217 (366)
T COG3490         138 NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKH  217 (366)
T ss_pred             CCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhc
Confidence             356889998854 446677777777788888888 76666532                  124555666677665443


Q ss_pred             ecc--CCCCcEEEEEccCCCCeEEeeec
Q 022303          271 RST--DCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       271 ~~~--~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      .-.  .....|+.++..+||+.++.+-+
T Consensus       218 ~Lp~~l~~lSiRHld~g~dgtvwfgcQy  245 (366)
T COG3490         218 TLPASLRQLSIRHLDIGRDGTVWFGCQY  245 (366)
T ss_pred             cCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence            322  11127999999999988776543

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.80  E-value=1.2  Score=40.36  Aligned_cols=71  Identities=21%  Similarity=0.162  Sum_probs=43.6

Q ss_pred             CCCeEEEecCCCcEEEEEcCC----cceeeecc----------------------ccCCceeEEEeCC----C-CeEEEE
Q 022303          202 FDPEAVVGCEDGTARVFDMYS----RKCSQIIR----------------------MHCAPVTSLSLSE----D-QLIISG  250 (299)
Q Consensus       202 ~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~----------------------~~~~~i~~~~~~~----~-~~l~~~  250 (299)
                      +...++.+..||.+.......    +.......                      ........++++.    + .++++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            555577788888887777654    11111110                      0123455556655    5 899999


Q ss_pred             eCCCcEEEEeCCCCceEEEeec
Q 022303          251 SSLGSIAISGLSSDQRVATLRS  272 (299)
Q Consensus       251 ~~dg~i~iwd~~~~~~~~~~~~  272 (299)
                      +.|+.||+||+.+++++.+...
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEEET
T ss_pred             eCCCeEEEEECCCCeEEEEecc
Confidence            9999999999999999776643

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=91.42  E-value=6.6  Score=31.78  Aligned_cols=145  Identities=18%  Similarity=0.142  Sum_probs=80.4

Q ss_pred             EEEEEeCCCcEEEEecCCc-----eeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCce--eeeeccCCc----
Q 022303          124 LILTGVGDKVMRLWSLEGY-----KCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR--SVFPSREGT----  192 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~--~~~~~~~~~----  192 (299)
                      ..+.......|.+|.....     +..+.+..++.+..++|.  ++.++.+..+...+.|+.+..  ..+......    
T Consensus       106 ~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~  183 (275)
T PF00780_consen  106 RRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFK  183 (275)
T ss_pred             eEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhh
Confidence            3333444458888887642     567788888888888887  556664445668888988553  222111110    


Q ss_pred             -----cceeeeeccCCCeEEEecCCCcEEEEEcCCcceee-eccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCce
Q 022303          193 -----FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ-IIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQR  266 (299)
Q Consensus       193 -----~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  266 (299)
                           ......+.-.++.++.+. +..-.+.|. .|+..+ ..-.....+.++++.. .++++-+. +.|.||++.++++
T Consensus       184 ~~~~~~~~~~~~~~~~~e~Ll~~-~~~g~fv~~-~G~~~r~~~i~W~~~p~~~~~~~-pyli~~~~-~~iEV~~~~~~~l  259 (275)
T PF00780_consen  184 SRNSSSKPLGIFQLSDNEFLLCY-DNIGVFVNK-NGEPSRKSTIQWSSAPQSVAYSS-PYLIAFSS-NSIEVRSLETGEL  259 (275)
T ss_pred             hcccCCCceEEEEeCCceEEEEe-cceEEEEcC-CCCcCcccEEEcCCchhEEEEEC-CEEEEECC-CEEEEEECcCCcE
Confidence                 011112222222333332 233333343 354443 1113344566676643 36666555 5599999999999


Q ss_pred             EEEeeccC
Q 022303          267 VATLRSTD  274 (299)
Q Consensus       267 ~~~~~~~~  274 (299)
                      ++++....
T Consensus       260 vQ~i~~~~  267 (275)
T PF00780_consen  260 VQTIPLPN  267 (275)
T ss_pred             EEEEECCC
Confidence            99987553

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.41  E-value=8.9  Score=33.26  Aligned_cols=147  Identities=12%  Similarity=0.132  Sum_probs=79.0

Q ss_pred             EEe-cCC-E-EEEEeCCC----cEEEEecCCceeEEE-ecCCCceeEEEEecCCCEEE-EEcCC-----------eEEEE
Q 022303          118 CRM-KRG-L-ILTGVGDK----VMRLWSLEGYKCVEE-YSLPNAASLVDFDFDESKIV-GLIGT-----------RICIW  177 (299)
Q Consensus       118 ~~~-~~~-~-l~s~~~dg----~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~-~~~d~-----------~i~v~  177 (299)
                      ..+ +++ + +++-+..|    .++++|+.+++.+.. +..... ..+.|.++++.++ ...+.           .|+.|
T Consensus       129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~  207 (414)
T PF02897_consen  129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH  207 (414)
T ss_dssp             EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred             eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence            445 566 4 44445555    599999999987653 232211 1299999998877 44322           48888


Q ss_pred             ecCCce----eeeeccCCcc-ceeeeeccCCCeEEE-ec--CC-CcEEEEEcCCc----ceeeecccc-CCceeEEEeCC
Q 022303          178 RRNGLR----SVFPSREGTF-MKGLCMRYFDPEAVV-GC--ED-GTARVFDMYSR----KCSQIIRMH-CAPVTSLSLSE  243 (299)
Q Consensus       178 d~~~~~----~~~~~~~~~~-~~~~~~~~~~~~l~s-~~--~d-~~i~iwd~~~~----~~~~~~~~~-~~~i~~~~~~~  243 (299)
                      ++.+..    .++....... ...+..+.++.+++. ..  .+ ..+.+.|+..+    .....+... .+....+....
T Consensus       208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~  287 (414)
T PF02897_consen  208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHG  287 (414)
T ss_dssp             ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEET
T ss_pred             ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccC
Confidence            888763    4555555544 334567777887443 22  22 45778888764    122222222 23233343333


Q ss_pred             CCeEEEEe---CCCcEEEEeCCCCc
Q 022303          244 DQLIISGS---SLGSIAISGLSSDQ  265 (299)
Q Consensus       244 ~~~l~~~~---~dg~i~iwd~~~~~  265 (299)
                      +.+++...   .++.|.-.++.+..
T Consensus       288 ~~~yi~Tn~~a~~~~l~~~~l~~~~  312 (414)
T PF02897_consen  288 DRLYILTNDDAPNGRLVAVDLADPS  312 (414)
T ss_dssp             TEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred             CEEEEeeCCCCCCcEEEEecccccc
Confidence            43433332   24566667776654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=91.11  E-value=6.9  Score=31.44  Aligned_cols=139  Identities=12%  Similarity=0.007  Sum_probs=76.7

Q ss_pred             ceeEEEEecCCCEEE-EE---cCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEE-cCCcceee
Q 022303          153 AASLVDFDFDESKIV-GL---IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFD-MYSRKCSQ  227 (299)
Q Consensus       153 ~~~~~~~~~~~~~l~-~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~  227 (299)
                      .....+++++++.++ ..   ....++++..........  .+.....-.|.+++...+....+...+++. ..+++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            345599999999888 33   233666666554432221  222222346777755555545555555553 33333221


Q ss_pred             -ecc--ccCCceeEEEeCCC-CeEEEEe---CCCcEEEEeCC---CC------ceEEEeeccCCCCcEEEEEccCCCCeE
Q 022303          228 -IIR--MHCAPVTSLSLSED-QLIISGS---SLGSIAISGLS---SD------QRVATLRSTDCTGHIICLMYPQFLHML  291 (299)
Q Consensus       228 -~~~--~~~~~i~~~~~~~~-~~l~~~~---~dg~i~iwd~~---~~------~~~~~~~~~~~~~~i~~~~~s~~g~~l  291 (299)
                       ...  .....|..+.++|| ..++.-.   .++.|.+=-+.   .+      ..+........  .+..++|.+++.++
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~--~v~~v~W~~~~~L~  180 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS--DVTDVAWSDDSTLV  180 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC--cceeeeecCCCEEE
Confidence             111  11228999999999 5444433   45677766543   22      11111112223  79999999999888


Q ss_pred             Eeee
Q 022303          292 FFLC  295 (299)
Q Consensus       292 ~s~s  295 (299)
                      +.+.
T Consensus       181 V~~~  184 (253)
T PF10647_consen  181 VLGR  184 (253)
T ss_pred             EEeC
Confidence            7664

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=90.79  E-value=13  Score=34.11  Aligned_cols=104  Identities=11%  Similarity=0.019  Sum_probs=61.9

Q ss_pred             EEEecCCCEEE-EEcCCeEEEEecCCceeeeecc---CCccceeeee--ccCCCeEEEecCCCcEEEEEcC---------
Q 022303          157 VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSR---EGTFMKGLCM--RYFDPEAVVGCEDGTARVFDMY---------  221 (299)
Q Consensus       157 ~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~--~~~~~~l~s~~~d~~i~iwd~~---------  221 (299)
                      +.-+.-++..+ -+....+.|||.+.....+...   .+.+. -+.|  .++++.+++.+..+.|.+|--.         
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~-dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p  113 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIR-DLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP  113 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCcee-eceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence            44444444433 4445589999999876433322   22222 2233  4556668888888899888642         


Q ss_pred             Ccceeeecc--cc-CCceeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022303          222 SRKCSQIIR--MH-CAPVTSLSLSEDQLIISGSSLGSIAISGLS  262 (299)
Q Consensus       222 ~~~~~~~~~--~~-~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~  262 (299)
                      +...+..+.  .+ ..+|.+..|.++..+++|+ ++.+.|+|-.
T Consensus       114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~  156 (631)
T PF12234_consen  114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW  156 (631)
T ss_pred             ccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence            122333332  23 3678999999986676666 4568888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA02790 Kelch-like protein; Provisional

Probab=90.48  E-value=12  Score=33.27  Aligned_cols=165  Identities=10%  Similarity=-0.026  Sum_probs=75.1

Q ss_pred             EEEEEeCCC-----cEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcC--CeEEEEecCCcee-eeeccCCcc
Q 022303          124 LILTGVGDK-----VMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIG--TRICIWRRNGLRS-VFPSREGTF  193 (299)
Q Consensus       124 ~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d--~~i~v~d~~~~~~-~~~~~~~~~  193 (299)
                      +++.|+.++     .+..||..+++....-..+.+... ....-++...+ |+.+  ..+..||..+..- .........
T Consensus       274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r  353 (480)
T PHA02790        274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPR  353 (480)
T ss_pred             EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCC
Confidence            666676543     466788877664432222221111 12233555544 5543  3678888766531 111111111


Q ss_pred             ceeeeeccCCCeEEEecCCC---cEEEEEcCCcc--eeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceE-
Q 022303          194 MKGLCMRYFDPEAVVGCEDG---TARVFDMYSRK--CSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRV-  267 (299)
Q Consensus       194 ~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-  267 (299)
                      ....+...++...+.|+.++   .+..||.++.+  .+......... .+++...+++.+.|+   ...+||..+++-. 
T Consensus       354 ~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~  429 (480)
T PHA02790        354 CNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCALVFGRRLFLVGR---NAEFYCESSNTWTL  429 (480)
T ss_pred             cccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEEEECCEEEEECC---ceEEecCCCCcEeE
Confidence            11112233444456666543   46678876532  22122111111 122222345566663   4778998765422 


Q ss_pred             -EEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          268 -ATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       268 -~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                       ..+.....  ....+.  -+|+..+.|+.
T Consensus       430 ~~~m~~~r~--~~~~~v--~~~~IYviGG~  455 (480)
T PHA02790        430 IDDPIYPRD--NPELII--VDNKLLLIGGF  455 (480)
T ss_pred             cCCCCCCcc--ccEEEE--ECCEEEEECCc
Confidence             22211111  122222  26777777764

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=90.41  E-value=3.6  Score=35.58  Aligned_cols=79  Identities=14%  Similarity=0.157  Sum_probs=54.9

Q ss_pred             eeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCcee-EEEeC----------------CC---CeEEEEeCCCc
Q 022303          196 GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVT-SLSLS----------------ED---QLIISGSSLGS  255 (299)
Q Consensus       196 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~-~~~~~----------------~~---~~l~~~~~dg~  255 (299)
                      .++++|.+...++...-|.|.++|+.++..++.+++..+.=. -+...                +.   -+++-+-.-|.
T Consensus       312 ~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg~  391 (415)
T PF14655_consen  312 SICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRGI  391 (415)
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCCe
Confidence            467888888888888889999999999888877775443111 01000                01   13455667899


Q ss_pred             EEEEeCCCCceEEEeeccC
Q 022303          256 IAISGLSSDQRVATLRSTD  274 (299)
Q Consensus       256 i~iwd~~~~~~~~~~~~~~  274 (299)
                      |.||++++|..+..+....
T Consensus       392 lEvW~~~~g~Rv~a~~v~k  410 (415)
T PF14655_consen  392 LEVWSMRQGPRVAAFNVGK  410 (415)
T ss_pred             EEEEecCCCCEEEEEEeCC
Confidence            9999999998887776543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.36  E-value=2.3  Score=33.24  Aligned_cols=68  Identities=15%  Similarity=0.031  Sum_probs=47.5

Q ss_pred             eeeccCCCeEEEecCCCcEEEEEcCCcceeeec-------c-------ccCCceeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022303          197 LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII-------R-------MHCAPVTSLSLSEDQLIISGSSLGSIAISGLS  262 (299)
Q Consensus       197 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------~-------~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~  262 (299)
                      ..+...+.++++-..+|.+++||+.+++.+..-       .       .....|..+.++.+...+..-.+|..+.|+..
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence            356677888999999999999999987654322       1       23456788888866333333456888999876


Q ss_pred             CC
Q 022303          263 SD  264 (299)
Q Consensus       263 ~~  264 (299)
                      -+
T Consensus        96 L~   97 (219)
T PF07569_consen   96 LG   97 (219)
T ss_pred             cc
Confidence            44

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.81  E-value=9.6  Score=31.04  Aligned_cols=184  Identities=9%  Similarity=0.066  Sum_probs=113.8

Q ss_pred             eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCC--ceeEEEEecCCCEEE-EEcCCeEEEEecCCce
Q 022303          109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIV-GLIGTRICIWRRNGLR  183 (299)
Q Consensus       109 ~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~  183 (299)
                      .+-++.|.++.| ++. .|++......-.++=..+|+.+.++....  ..-.+++..++.+++ --.+..++++.+....
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            455566999999 444 77777777777788778899999887432  223367777776666 4446777777665432


Q ss_pred             e---------eeeccC--CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeec---ccc-------CCceeEEEeC
Q 022303          184 S---------VFPSRE--GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII---RMH-------CAPVTSLSLS  242 (299)
Q Consensus       184 ~---------~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~-------~~~i~~~~~~  242 (299)
                      .         .+....  +...-.+++.+.+..++.+-+-+-+.||...........   ..+       -..|.++.|+
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence            1         111111  122225788888888888888777888776633211111   011       2346778888


Q ss_pred             CC--CeEEEEeCCCcEEEEeCCCCceEEEeeccCCC-------CcEEEEEccCCCCeEEe
Q 022303          243 ED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCT-------GHIICLMYPQFLHMLFF  293 (299)
Q Consensus       243 ~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~i~~~~~s~~g~~l~s  293 (299)
                      +.  .+++-+.+++.+.-.|.. |+.+..+.-..+.       ...-.++..++|...++
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv  300 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV  300 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence            65  677777788888888874 6655544322211       13456788888775554

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=89.75  E-value=12  Score=32.23  Aligned_cols=157  Identities=10%  Similarity=0.117  Sum_probs=77.8

Q ss_pred             CeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeE-------------------------------------------EEe
Q 022303          114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCV-------------------------------------------EEY  148 (299)
Q Consensus       114 ~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~-------------------------------------------~~~  148 (299)
                      .|+.+.+ .+. .|+.|...|.|-+|.....+.-                                           ..+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            4777777 333 8888888998888876432111                                           011


Q ss_pred             cCC-CceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCc---------cceeee-----eccCC---CeEEEe
Q 022303          149 SLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGT---------FMKGLC-----MRYFD---PEAVVG  209 (299)
Q Consensus       149 ~~~-~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~---------~~~~~~-----~~~~~---~~l~s~  209 (299)
                      +.. .++..++.+ |--+++ |..+|.+.|.|++++..++..+-..         ....+.     ..-++   ..+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            112 233335554 334566 9999999999999987655432221         011111     21112   227889


Q ss_pred             cCCCcEEEEEcCC---ccee----eeccccCCceeEEE-eC------------------CC---CeEEEEeCCCcEEEEe
Q 022303          210 CEDGTARVFDMYS---RKCS----QIIRMHCAPVTSLS-LS------------------ED---QLIISGSSLGSIAISG  260 (299)
Q Consensus       210 ~~d~~i~iwd~~~---~~~~----~~~~~~~~~i~~~~-~~------------------~~---~~l~~~~~dg~i~iwd  260 (299)
                      ...|.+.+|.+.-   +.-.    .....+.++|..+. ++                  ++   .-++....+..++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            9999999997641   2111    11113445554443 21                  11   1244445577899999


Q ss_pred             CCCCceEEEee
Q 022303          261 LSSDQRVATLR  271 (299)
Q Consensus       261 ~~~~~~~~~~~  271 (299)
                      ..+.+..+...
T Consensus       242 ~~~~k~~~K~~  252 (395)
T PF08596_consen  242 PPKSKGAHKSF  252 (395)
T ss_dssp             TT---EEEEE-
T ss_pred             CCCCcccceee
Confidence            98877655554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>smart00564 PQQ beta-propeller repeat

Probab=89.67  E-value=1.5  Score=22.18  Aligned_cols=28  Identities=14%  Similarity=0.194  Sum_probs=22.2

Q ss_pred             cCCEEEEEeCCCcEEEEecCCceeEEEe
Q 022303          121 KRGLILTGVGDKVMRLWSLEGYKCVEEY  148 (299)
Q Consensus       121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~  148 (299)
                      .++.++.++.+|.+..+|.++|+.+..+
T Consensus         5 ~~~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        5 SDGTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             ECCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            3457888888999999999888877653

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=89.11  E-value=14  Score=32.02  Aligned_cols=166  Identities=10%  Similarity=-0.016  Sum_probs=70.2

Q ss_pred             CcEEEEecCCceeEEEecCCC--ceeE--EEEecCCCEEEEEc---------------------CCeEEEEecCCceeee
Q 022303          132 KVMRLWSLEGYKCVEEYSLPN--AASL--VDFDFDESKIVGLI---------------------GTRICIWRRNGLRSVF  186 (299)
Q Consensus       132 g~i~iwd~~~~~~~~~~~~~~--~~~~--~~~~~~~~~l~~~~---------------------d~~i~v~d~~~~~~~~  186 (299)
                      |-+.+.|-++.+.....+...  ....  +-+.|..+.++.+.                     ..++.+||..+.+...
T Consensus       157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q  236 (461)
T PF05694_consen  157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ  236 (461)
T ss_dssp             -EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE
T ss_pred             CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee
Confidence            457777888777777666432  2222  55566666666332                     3489999999886433


Q ss_pred             e--ccCCc-cceeeee--ccCCCe-EEEecCCCcEEEEEc-CCcc----eeeecc-----------------ccCCceeE
Q 022303          187 P--SREGT-FMKGLCM--RYFDPE-AVVGCEDGTARVFDM-YSRK----CSQIIR-----------------MHCAPVTS  238 (299)
Q Consensus       187 ~--~~~~~-~~~~~~~--~~~~~~-l~s~~~d~~i~iwd~-~~~~----~~~~~~-----------------~~~~~i~~  238 (299)
                      .  .-... ..--+.+  .|...+ ++.+.-..+|..|-. +.++    .+-++.                 .-..-|+.
T Consensus       237 ~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD  316 (461)
T PF05694_consen  237 TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD  316 (461)
T ss_dssp             EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred             EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence            2  22211 1112233  333444 444444455555543 2221    111111                 11245789


Q ss_pred             EEeCCC-CeEEE-EeCCCcEEEEeCCCC---ceEEEeeccC--------------CCCcEEEEEccCCCCeEE-eeecc
Q 022303          239 LSLSED-QLIIS-GSSLGSIAISGLSSD---QRVATLRSTD--------------CTGHIICLMYPQFLHMLF-FLCFL  297 (299)
Q Consensus       239 ~~~~~~-~~l~~-~~~dg~i~iwd~~~~---~~~~~~~~~~--------------~~~~i~~~~~s~~g~~l~-s~s~~  297 (299)
                      |..|-| ++|.. +-.+|.|+.||+..-   +++.++..-.              -.+..+-+..|.||+.|. |.|+|
T Consensus       317 I~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnSLy  395 (461)
T PF05694_consen  317 ILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNSLY  395 (461)
T ss_dssp             EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE----
T ss_pred             EEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEeecc
Confidence            999987 66555 446999999999763   3333322110              001346778899998775 55554

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.76  E-value=15  Score=34.52  Aligned_cols=33  Identities=6%  Similarity=0.053  Sum_probs=27.5

Q ss_pred             cCCceeEEEeCCC----CeEEEEeCCCcEEEEeCCCC
Q 022303          232 HCAPVTSLSLSED----QLIISGSSLGSIAISGLSSD  264 (299)
Q Consensus       232 ~~~~i~~~~~~~~----~~l~~~~~dg~i~iwd~~~~  264 (299)
                      ....|..+.|+|.    ..|++-..|+++|+||+...
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            3457899999984    58889999999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.68  E-value=4  Score=31.55  Aligned_cols=55  Identities=13%  Similarity=0.169  Sum_probs=38.1

Q ss_pred             eeEEEeCCCCeEEEEeCCCcEEEEeCCC--CceEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022303          236 VTSLSLSEDQLIISGSSLGSIAISGLSS--DQRVATLRSTDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       236 i~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      ...+...+.+.|+.+...+.|.+|++.+  .+.+.++..-.   .|..+.++..|+||++
T Consensus        20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~---~V~~l~y~~~GDYlvT   76 (215)
T PF14761_consen   20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVG---RVLQLVYSEAGDYLVT   76 (215)
T ss_pred             cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchh---heeEEEeccccceEEE
Confidence            3344444423444446677899999983  45566676553   8999999999999987

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.60  E-value=2.2  Score=22.90  Aligned_cols=36  Identities=11%  Similarity=0.200  Sum_probs=25.8

Q ss_pred             eEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEc
Q 022303          246 LIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMY  284 (299)
Q Consensus       246 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  284 (299)
                      ++++...+++|.++|..+++.+..+....   ....++|
T Consensus         6 lyv~~~~~~~v~~id~~~~~~~~~i~vg~---~P~~i~~   41 (42)
T TIGR02276         6 LYVTNSGSNTVSVIDTATNKVIATIPVGG---YPFGVAV   41 (42)
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEEECCC---CCceEEe
Confidence            44555568999999999999888887643   3445554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.53  E-value=2.5  Score=22.65  Aligned_cols=36  Identities=14%  Similarity=0.128  Sum_probs=25.5

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEE
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDF  159 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  159 (299)
                      ++++...+++|.++|..+++.+..+........+.|
T Consensus         6 lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         6 LYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            344455688999999999988888876554444444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=88.49  E-value=13  Score=30.64  Aligned_cols=161  Identities=12%  Similarity=0.100  Sum_probs=94.1

Q ss_pred             EEEEEeCCCcEEEEecCCcee-----EEEec-C-CCceeE-EEEecC--CCEEE--EEcCCeEEEEecCCceeeeec-cC
Q 022303          124 LILTGVGDKVMRLWSLEGYKC-----VEEYS-L-PNAASL-VDFDFD--ESKIV--GLIGTRICIWRRNGLRSVFPS-RE  190 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~-----~~~~~-~-~~~~~~-~~~~~~--~~~l~--~~~d~~i~v~d~~~~~~~~~~-~~  190 (299)
                      .++.++.||+|.-|...-+..     ...+. . ...++. +++...  +.+|.  -...++|.|||-.=....... ..
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~  181 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI  181 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence            478899999999998542221     12222 1 234444 666533  45555  345789999986533211100 00


Q ss_pred             CccceeeeeccC-----CC--------------eEEEecCCCcEEEEEcCCcceeeecc--ccCCceeEEEeCCC-----
Q 022303          191 GTFMKGLCMRYF-----DP--------------EAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED-----  244 (299)
Q Consensus       191 ~~~~~~~~~~~~-----~~--------------~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~-----  244 (299)
                      ..... ..+.|.     +.              .=+.|..-|.|-+||+. +..++.+.  +.-...+.|+..|.     
T Consensus       182 DP~iP-agyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~  259 (336)
T TIGR03118       182 DPALP-AGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSL  259 (336)
T ss_pred             CCCCC-CCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCC
Confidence            00000 011111     11              12344556789999987 88888774  23345677777652     


Q ss_pred             --CeEEEEeCCCcEEEEeCCCCceEEEeeccCCC----CcEEEEEccC
Q 022303          245 --QLIISGSSLGSIAISGLSSDQRVATLRSTDCT----GHIICLMYPQ  286 (299)
Q Consensus       245 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~i~~~~~s~  286 (299)
                        .+|+---.||+|..||..+++.+-.+....+.    ..++.++|-.
T Consensus       260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence              45666667999999999999988888765542    2467888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PHA02790 Kelch-like protein; Provisional

Probab=88.17  E-value=18  Score=32.16  Aligned_cols=138  Identities=14%  Similarity=0.039  Sum_probs=64.2

Q ss_pred             EEEEEeCC--CcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCC---eEEEEecCCceeeee-ccCCccce
Q 022303          124 LILTGVGD--KVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGT---RICIWRRNGLRSVFP-SREGTFMK  195 (299)
Q Consensus       124 ~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~---~i~v~d~~~~~~~~~-~~~~~~~~  195 (299)
                      ..+.|+.+  .++..||..+++....-..+..... ....-+++..+ |+.++   .+..||..+..-... ........
T Consensus       321 iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~  400 (480)
T PHA02790        321 LYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK  400 (480)
T ss_pred             EEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc
Confidence            44555543  3577788776654332222222222 22233555545 55443   577888877642211 11111111


Q ss_pred             eeeeccCCCeEEEecCCCcEEEEEcCCcc--eeeeccccCCceeEEEeCCCCeEEEEeCC-----CcEEEEeCCCCc
Q 022303          196 GLCMRYFDPEAVVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSEDQLIISGSSL-----GSIAISGLSSDQ  265 (299)
Q Consensus       196 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~  265 (299)
                      ..+...++...+.|   |.+.+||..+.+  .+..+..... -.+++...++..+.|+.+     .++..||..+++
T Consensus       401 ~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~-~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        401 SCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRD-NPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             ceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCcc-ccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            11222333334444   346788876542  2332321122 223344455777777754     346677766543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.90  E-value=8.3  Score=31.29  Aligned_cols=96  Identities=17%  Similarity=0.101  Sum_probs=61.8

Q ss_pred             eeeccCCCe-EEEecCCCc-EEEEEcCCcceeeeccccCC--ceeEEEeCCC-CeEEEEeC-----CCcEEEEeCCCC-c
Q 022303          197 LCMRYFDPE-AVVGCEDGT-ARVFDMYSRKCSQIIRMHCA--PVTSLSLSED-QLIISGSS-----LGSIAISGLSSD-Q  265 (299)
Q Consensus       197 ~~~~~~~~~-l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~-~~l~~~~~-----dg~i~iwd~~~~-~  265 (299)
                      +.++|..+. ++.+-.-|+ ..++|....+....+...++  .--.=.|+|| .+|...-.     -|.|-|||.+.+ +
T Consensus        73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq  152 (366)
T COG3490          73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ  152 (366)
T ss_pred             eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccc
Confidence            456666665 555555554 56888887665555432111  1122358898 65554432     367999999854 4


Q ss_pred             eEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          266 RVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       266 ~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      .+.++..+.-  ....+.+.+||+.|+.+
T Consensus       153 rvgE~~t~Gi--GpHev~lm~DGrtlvva  179 (366)
T COG3490         153 RVGEFSTHGI--GPHEVTLMADGRTLVVA  179 (366)
T ss_pred             eecccccCCc--CcceeEEecCCcEEEEe
Confidence            5677777766  67889999999988865

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=87.85  E-value=6.5  Score=35.20  Aligned_cols=88  Identities=10%  Similarity=0.093  Sum_probs=51.5

Q ss_pred             CeEEEecCCCcEEEEEcCC-----cceeeecc---ccCCc--eeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc--eEEEe
Q 022303          204 PEAVVGCEDGTARVFDMYS-----RKCSQIIR---MHCAP--VTSLSLSED-QLIISGSSLGSIAISGLSSDQ--RVATL  270 (299)
Q Consensus       204 ~~l~s~~~d~~i~iwd~~~-----~~~~~~~~---~~~~~--i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~--~~~~~  270 (299)
                      +.+++.-..+.|.+|.+..     .+.+..-.   ...-+  ...+.|+|. ..|++-.....-.+++++...  ...-+
T Consensus        73 paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi  152 (671)
T PF15390_consen   73 PALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI  152 (671)
T ss_pred             CceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec
Confidence            3456666678899998752     22221111   11111  245789998 666665555544566665432  22333


Q ss_pred             eccCCCCcEEEEEccCCCCeEEee
Q 022303          271 RSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       271 ~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      +. .+  .|.|.+|.+||+.|+.+
T Consensus       153 ~~-~G--~IhCACWT~DG~RLVVA  173 (671)
T PF15390_consen  153 KT-SG--LIHCACWTKDGQRLVVA  173 (671)
T ss_pred             cC-Cc--eEEEEEecCcCCEEEEE
Confidence            22 23  89999999999988765

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=87.72  E-value=0.47  Score=44.08  Aligned_cols=83  Identities=18%  Similarity=0.269  Sum_probs=51.9

Q ss_pred             CCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEE-----------eCCC-CeEEEEeCCCcEEEEeCC-----CCc
Q 022303          203 DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS-----------LSED-QLIISGSSLGSIAISGLS-----SDQ  265 (299)
Q Consensus       203 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~-----------~~~~-~~l~~~~~dg~i~iwd~~-----~~~  265 (299)
                      ..++..+-.++.+++....+... .-+.+|...+..++           ++|| ..+++++.||.++.|-+.     .-+
T Consensus       195 ~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~r  273 (1283)
T KOG1916|consen  195 KVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHR  273 (1283)
T ss_pred             cceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHh
Confidence            34466777888888777664332 33445665555543           4688 889999999987777653     345


Q ss_pred             eEEEeeccCCCCcEEEEEccCC
Q 022303          266 RVATLRSTDCTGHIICLMYPQF  287 (299)
Q Consensus       266 ~~~~~~~~~~~~~i~~~~~s~~  287 (299)
                      |+..++.|.+. +-.|.-|+.+
T Consensus       274 clhewkphd~~-p~vC~lc~~~  294 (1283)
T KOG1916|consen  274 CLHEWKPHDKH-PRVCWLCHKQ  294 (1283)
T ss_pred             hhhccCCCCCC-Cceeeeeccc
Confidence            67777777743 3333334443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=87.53  E-value=15  Score=30.40  Aligned_cols=179  Identities=14%  Similarity=0.033  Sum_probs=79.1

Q ss_pred             eeEEEecCC-EEEEEeCCCcEEEEecCCceeEEEec----CCCceeEEEEecCCCEEEEEcCCeEEEEecCCc--eeeee
Q 022303          115 VDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYS----LPNAASLVDFDFDESKIVGLIGTRICIWRRNGL--RSVFP  187 (299)
Q Consensus       115 i~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~--~~~~~  187 (299)
                      ..++.|.++ .+++| ..+. .+...+.|+.-..+.    .+.....+....++..++++..|.|+.=.=...  +.+..
T Consensus        64 l~~I~f~~~~g~ivG-~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~  141 (302)
T PF14870_consen   64 LNSISFDGNEGWIVG-EPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVS  141 (302)
T ss_dssp             EEEEEEETTEEEEEE-ETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-
T ss_pred             EEEEEecCCceEEEc-CCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEccc
Confidence            456677555 44444 4443 333444444333332    223333444334443444555555433221111  12222


Q ss_pred             ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeC-CCCce
Q 022303          188 SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGL-SSDQR  266 (299)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~  266 (299)
                      ...+... .....+++.+++++.....+.-||.....-...-+.....|..|.|.|+..|......|.|+.=+. ...+.
T Consensus       142 ~~~gs~~-~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  142 ETSGSIN-DITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGET  220 (302)
T ss_dssp             S----EE-EEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEE
T ss_pred             CCcceeE-eEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccc
Confidence            2223322 224456777777776666666787653222222223467899999999933333448888888872 22222


Q ss_pred             EEE--eeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          267 VAT--LRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       267 ~~~--~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ...  .........+..++|.+++...++|+-
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~  252 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS  252 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence            222  111111115899999999888887764

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=87.38  E-value=25  Score=32.79  Aligned_cols=92  Identities=11%  Similarity=0.041  Sum_probs=56.2

Q ss_pred             EEEecCCCcEEEEEcCC-------c----c---------eeeeccccCCceeEEEeC--CC-CeEEEEeCCCcEEEEeCC
Q 022303          206 AVVGCEDGTARVFDMYS-------R----K---------CSQIIRMHCAPVTSLSLS--ED-QLIISGSSLGSIAISGLS  262 (299)
Q Consensus       206 l~s~~~d~~i~iwd~~~-------~----~---------~~~~~~~~~~~i~~~~~~--~~-~~l~~~~~dg~i~iwd~~  262 (299)
                      |+.+.+||.|.+|..++       .    .         +...+ .-...+++++++  .. ++||+++....|.||-..
T Consensus       117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~  195 (717)
T PF08728_consen  117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFA  195 (717)
T ss_pred             EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEe
Confidence            78899999999997632       1    0         11111 123468999998  66 888888888888887654


Q ss_pred             CC-ceEEEeeccCCCCcEEEEEccCCC---C---eEEeeeccc
Q 022303          263 SD-QRVATLRSTDCTGHIICLMYPQFL---H---MLFFLCFLP  298 (299)
Q Consensus       263 ~~-~~~~~~~~~~~~~~i~~~~~s~~g---~---~l~s~s~~~  298 (299)
                      .. +.......+.....|.+++|-++.   .   .|++++.++
T Consensus       196 l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G  238 (717)
T PF08728_consen  196 LVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISG  238 (717)
T ss_pred             ccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccC
Confidence            32 111111111111168888887753   2   677777654

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.24  E-value=8.6  Score=27.31  Aligned_cols=102  Identities=5%  Similarity=-0.048  Sum_probs=60.9

Q ss_pred             EEEEEeCCCcEEEEecCC--------ceeEEEecCCCceeEEEEec-----CCCEEEEEcCCeEEEEecCCceeeeec-c
Q 022303          124 LILTGVGDKVMRLWSLEG--------YKCVEEYSLPNAASLVDFDF-----DESKIVGLIGTRICIWRRNGLRSVFPS-R  189 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~d~~i~v~d~~~~~~~~~~-~  189 (299)
                      .|+.++.-|.|.|++...        ...+..+.....+.+++-.+     +...|+.+....+..||+.....+|.. .
T Consensus        12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyke~   91 (136)
T PF14781_consen   12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYKEV   91 (136)
T ss_pred             eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhhhC
Confidence            788888889999998763        23456666677777655433     234566777789999999887644432 2


Q ss_pred             CCccceee--eeccCCCeEEEecCCCcEEEEEcCCcce
Q 022303          190 EGTFMKGL--CMRYFDPEAVVGCEDGTARVFDMYSRKC  225 (299)
Q Consensus       190 ~~~~~~~~--~~~~~~~~l~s~~~d~~i~iwd~~~~~~  225 (299)
                      ......++  .+......++..+.+..|.-||..-.+.
T Consensus        92 ~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   92 PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI  129 (136)
T ss_pred             ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence            22222221  1222223355555566777777653333

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=86.47  E-value=25  Score=31.79  Aligned_cols=144  Identities=9%  Similarity=0.027  Sum_probs=80.2

Q ss_pred             ccCeeEEEecCC--EEEEEe--CCCcEEEEecCCceeEEEecCCCceeEEEEecCC-----CEEEEEcCCeEEEEecCCc
Q 022303          112 SVGVDQCRMKRG--LILTGV--GDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE-----SKIVGLIGTRICIWRRNGL  182 (299)
Q Consensus       112 ~~~i~~~~~~~~--~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~d~~i~v~d~~~~  182 (299)
                      -.+|..++|.||  .++|.-  .+|.+++=|   .+.+..|+   .+.-+.|.|-+     .+||.-....|.||-+.-.
T Consensus        19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE---hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE---HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             hccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc---eeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            358889999776  444443  344444432   22333332   24447887743     4566888889999988621


Q ss_pred             -----e----eeeec--cCCccceeeeeccCCCeEEEecCCCcEEEEEcCC--cceeeeccccCCceeEEEeCCC-CeEE
Q 022303          183 -----R----SVFPS--REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS--RKCSQIIRMHCAPVTSLSLSED-QLII  248 (299)
Q Consensus       183 -----~----~~~~~--~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~i~~~~~~~~-~~l~  248 (299)
                           +    ...+.  .-........|+|....|+.-.....-.+++++.  ......+ ...+.|.|.+|.+| +.|+
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLV  171 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLV  171 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEE
Confidence                 1    01111  0001112346888887765544443334555543  3344445 45678999999998 5444


Q ss_pred             -EEeCCCcEEEEeCC
Q 022303          249 -SGSSLGSIAISGLS  262 (299)
Q Consensus       249 -~~~~dg~i~iwd~~  262 (299)
                       +.+..=.-+|||-.
T Consensus       172 VAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  172 VAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEeCCeEEEEEecCc
Confidence             44444456889864

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=86.46  E-value=7.6  Score=31.09  Aligned_cols=67  Identities=10%  Similarity=0.232  Sum_probs=49.6

Q ss_pred             cccCeeEEEe-----cC--C--EEEEEeCCCcEEEEecCCceeEEEecCCCceeEE----EEe-cCCCEEEEEcCCeEEE
Q 022303          111 HSVGVDQCRM-----KR--G--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLV----DFD-FDESKIVGLIGTRICI  176 (299)
Q Consensus       111 h~~~i~~~~~-----~~--~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~-~~~~~l~~~~d~~i~v  176 (299)
                      +...|+|+..     .+  .  .|+.|..+|.|.|.|.+....+..++.+..++.+    .+. -|.+.++++.||.|++
T Consensus       175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~  254 (257)
T PF14779_consen  175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT  254 (257)
T ss_pred             cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence            4567888754     12  2  8999999999999999988888888877655443    333 4555566999999987


Q ss_pred             E
Q 022303          177 W  177 (299)
Q Consensus       177 ~  177 (299)
                      .
T Consensus       255 i  255 (257)
T PF14779_consen  255 I  255 (257)
T ss_pred             E
Confidence            4

>PRK13616 lipoprotein LpqB; Provisional

Probab=86.12  E-value=27  Score=32.02  Aligned_cols=131  Identities=8%  Similarity=0.007  Sum_probs=67.0

Q ss_pred             eeEEEEecCCCEEE-EEc------------CCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEE---
Q 022303          154 ASLVDFDFDESKIV-GLI------------GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARV---  217 (299)
Q Consensus       154 ~~~~~~~~~~~~l~-~~~------------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i---  217 (299)
                      ...-.|+|+++.++ ...            .+.+++.++..+.... ...+.+ ..+.|++++..++... ++.|.+   
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-~~~g~I-ssl~wSpDG~RiA~i~-~g~v~Va~V  475 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-RVPGPI-SELQLSRDGVRAAMII-GGKVYLAVV  475 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh-ccCCCc-CeEEECCCCCEEEEEE-CCEEEEEEE
Confidence            44588999988766 322            1234333444332211 222233 3568999999966544 467766   


Q ss_pred             EEcCCcce-e---eecc-ccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCC-CceEEEeeccCCCCcEEEEEccCC
Q 022303          218 FDMYSRKC-S---QIIR-MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSS-DQRVATLRSTDCTGHIICLMYPQF  287 (299)
Q Consensus       218 wd~~~~~~-~---~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~  287 (299)
                      -....|+. +   ..+. .-...+.++.|.++..|+++..++.-.+|.+.- |.....+....-..++..++=+++
T Consensus       476 vr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~  551 (591)
T PRK13616        476 EQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS  551 (591)
T ss_pred             EeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc
Confidence            44344431 1   1121 223346889999884355666555555555432 332222222211126777776664

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=85.86  E-value=19  Score=30.00  Aligned_cols=135  Identities=14%  Similarity=0.148  Sum_probs=60.4

Q ss_pred             EecCCEEEEEeCCC-----cEEEEecCCceeE---EEec-CCCceeE-EEEecCCCEEE-EEc-----CCeEEEEecCCc
Q 022303          119 RMKRGLILTGVGDK-----VMRLWSLEGYKCV---EEYS-LPNAASL-VDFDFDESKIV-GLI-----GTRICIWRRNGL  182 (299)
Q Consensus       119 ~~~~~~l~s~~~dg-----~i~iwd~~~~~~~---~~~~-~~~~~~~-~~~~~~~~~l~-~~~-----d~~i~v~d~~~~  182 (299)
                      ...+.+++.|+.++     .+..+|+.+.+..   ..+. .+..... .+..-++++.+ ++.     ...+..||+.+.
T Consensus        70 ~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        70 SVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             EECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence            33444556666543     4666677665531   1221 1111111 22223455544 443     236888998876


Q ss_pred             e-eeeec-cCCccceeeeeccCCCeEEEecCCCc----EEEEEcCCcc--eeeeccccCCc-----eeEEEeCCCCeEEE
Q 022303          183 R-SVFPS-REGTFMKGLCMRYFDPEAVVGCEDGT----ARVFDMYSRK--CSQIIRMHCAP-----VTSLSLSEDQLIIS  249 (299)
Q Consensus       183 ~-~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~----i~iwd~~~~~--~~~~~~~~~~~-----i~~~~~~~~~~l~~  249 (299)
                      + ..... .........+....+...+.|+.++.    +.+||+.+.+  .+........+     ...+....+.+++.
T Consensus       150 ~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~  229 (323)
T TIGR03548       150 EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCI  229 (323)
T ss_pred             CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEE
Confidence            4 11111 11111111223344555666766532    4578887643  22221100111     22233334477888


Q ss_pred             EeCC
Q 022303          250 GSSL  253 (299)
Q Consensus       250 ~~~d  253 (299)
                      |+.+
T Consensus       230 GG~~  233 (323)
T TIGR03548       230 GGFN  233 (323)
T ss_pred             CCcC
Confidence            8865

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=85.20  E-value=23  Score=30.26  Aligned_cols=153  Identities=10%  Similarity=0.038  Sum_probs=91.6

Q ss_pred             cCCEEEEEeCCCcEEEEecCCceeEEEecCCC-ceeE-EEEecCCCEEEEEcCCeEEEEecCCceeeeeccCCc-cceee
Q 022303          121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASL-VDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGT-FMKGL  197 (299)
Q Consensus       121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~  197 (299)
                      .++.++.++.+|.+...|..+|+.+....... .... -.+-.++..++.+.++.++-.|..++.......... .....
T Consensus       110 ~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~  189 (370)
T COG1520         110 SDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI  189 (370)
T ss_pred             eCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence            46689999999999999998999998888766 2222 233334444445577888888888776443321111 11011


Q ss_pred             e--eccCCCeEEEecC--CCcEEEEEcCCcceeeeccc----cCCcee-EEEeCC-----CCeEEEEeCCCcEEEEeCCC
Q 022303          198 C--MRYFDPEAVVGCE--DGTARVFDMYSRKCSQIIRM----HCAPVT-SLSLSE-----DQLIISGSSLGSIAISGLSS  263 (299)
Q Consensus       198 ~--~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~----~~~~i~-~~~~~~-----~~~l~~~~~dg~i~iwd~~~  263 (299)
                      .  ....+..++.+..  ++.+.-.|..+|......+.    ....+. .-.+..     +.-+..++.++.+...|..+
T Consensus       190 ~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~  269 (370)
T COG1520         190 YGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADT  269 (370)
T ss_pred             ccCceeecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCC
Confidence            1  1122333555655  66777888888887766421    111110 011111     22346677788899999999


Q ss_pred             CceEEEeecc
Q 022303          264 DQRVATLRST  273 (299)
Q Consensus       264 ~~~~~~~~~~  273 (299)
                      ++.+..+...
T Consensus       270 G~~~W~~~~~  279 (370)
T COG1520         270 GELIWSFPAG  279 (370)
T ss_pred             CceEEEEecc
Confidence            9988877663

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=85.16  E-value=2.9  Score=27.35  Aligned_cols=44  Identities=9%  Similarity=-0.003  Sum_probs=30.6

Q ss_pred             EEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          249 SGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       249 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      .+..+|.+.-||..+++....+.+-.   ..+.+++++|+.+|+.+=
T Consensus        32 e~~~~GRll~ydp~t~~~~vl~~~L~---fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   32 EGRPTGRLLRYDPSTKETTVLLDGLY---FPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             HT---EEEEEEETTTTEEEEEEEEES---SEEEEEE-TTSSEEEEEE
T ss_pred             cCCCCcCEEEEECCCCeEEEehhCCC---ccCeEEEcCCCCEEEEEe
Confidence            34557889999999887655555544   689999999999887753

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=85.04  E-value=22  Score=29.87  Aligned_cols=158  Identities=10%  Similarity=0.029  Sum_probs=84.1

Q ss_pred             CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCc-eee------eeccCCccceeeeeccCCC
Q 022303          132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGL-RSV------FPSREGTFMKGLCMRYFDP  204 (299)
Q Consensus       132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~-~~~------~~~~~~~~~~~~~~~~~~~  204 (299)
                      -+|.|-|+...+.+.++..+...... -+.+..+..-|.||++.-..+... +..      |.........--++...+.
T Consensus       118 ~SVtVVDl~~~kvv~ei~~PGC~~iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~  196 (342)
T PF06433_consen  118 TSVTVVDLAAKKVVGEIDTPGCWLIY-PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG  196 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEGTSEEEEE-EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred             CeEEEEECCCCceeeeecCCCEEEEE-ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence            34555556666666666655422222 223333333889999888888733 211      1111111110112223344


Q ss_pred             eEEEecCCCcEEEEEcCCcce--eeeccc----------cCCceeEEEeCCC-CeEEEEeC---CC-------cEEEEeC
Q 022303          205 EAVVGCEDGTARVFDMYSRKC--SQIIRM----------HCAPVTSLSLSED-QLIISGSS---LG-------SIAISGL  261 (299)
Q Consensus       205 ~l~s~~~d~~i~iwd~~~~~~--~~~~~~----------~~~~i~~~~~~~~-~~l~~~~~---dg-------~i~iwd~  261 (299)
                      .++--+.+|.|+-.|+.....  ...+..          ..+.-.-+++++. +.|.+-..   ++       .|-++|+
T Consensus       197 ~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~  276 (342)
T PF06433_consen  197 RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL  276 (342)
T ss_dssp             EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred             eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence            456577888888888764432  111110          0112234667665 43333322   22       4778899


Q ss_pred             CCCceEEEeeccCCCCcEEEEEccCCCC-eEEe
Q 022303          262 SSDQRVATLRSTDCTGHIICLMYPQFLH-MLFF  293 (299)
Q Consensus       262 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~s  293 (299)
                      .+++.+.++....   ++.+++.+.+.+ +|++
T Consensus       277 ~t~krv~Ri~l~~---~~~Si~Vsqd~~P~L~~  306 (342)
T PF06433_consen  277 KTHKRVARIPLEH---PIDSIAVSQDDKPLLYA  306 (342)
T ss_dssp             TTTEEEEEEEEEE---EESEEEEESSSS-EEEE
T ss_pred             CCCeEEEEEeCCC---ccceEEEccCCCcEEEE
Confidence            9999999998655   688999998776 5543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=83.78  E-value=26  Score=33.01  Aligned_cols=66  Identities=15%  Similarity=0.147  Sum_probs=40.4

Q ss_pred             EEEEecCCCEEE-EEcCCeEEEEecCC----------cee-----e-------eeccCCccceeeeeccCC---CeEEEe
Q 022303          156 LVDFDFDESKIV-GLIGTRICIWRRNG----------LRS-----V-------FPSREGTFMKGLCMRYFD---PEAVVG  209 (299)
Q Consensus       156 ~~~~~~~~~~l~-~~~d~~i~v~d~~~----------~~~-----~-------~~~~~~~~~~~~~~~~~~---~~l~s~  209 (299)
                      .+.++++|++++ .+. ..|.|-.+..          +..     .       +....+....-+.|+|.+   ..|+.-
T Consensus        89 ~i~~n~~g~~lal~G~-~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vL  167 (717)
T PF10168_consen   89 QISLNPTGSLLALVGP-RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVL  167 (717)
T ss_pred             EEEECCCCCEEEEEcC-CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEE
Confidence            388899999999 555 4444444421          110     0       111111112235788885   558888


Q ss_pred             cCCCcEEEEEcCC
Q 022303          210 CEDGTARVFDMYS  222 (299)
Q Consensus       210 ~~d~~i~iwd~~~  222 (299)
                      ..|+.+++||+..
T Consensus       168 tsdn~lR~y~~~~  180 (717)
T PF10168_consen  168 TSDNTLRLYDISD  180 (717)
T ss_pred             ecCCEEEEEecCC
Confidence            9999999999875

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=83.75  E-value=0.9  Score=36.96  Aligned_cols=59  Identities=31%  Similarity=0.439  Sum_probs=47.3

Q ss_pred             CCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhh
Q 022303           12 PPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCK   70 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~   70 (299)
                      |+.++-....-.+..+|.|+...||+.+.-.++....-+|+.|..++.+..+|..+-..
T Consensus        86 p~~~~~~npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~  144 (419)
T KOG2120|consen   86 PKLNRENNPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLT  144 (419)
T ss_pred             cchhcccCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccC
Confidence            33333333445577899999999999999999999999999999999988899774433

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=83.55  E-value=21  Score=28.62  Aligned_cols=96  Identities=9%  Similarity=-0.051  Sum_probs=54.3

Q ss_pred             eeeeccCCCeEEEec---CCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEe-CCCCceE-EE
Q 022303          196 GLCMRYFDPEAVVGC---EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG-LSSDQRV-AT  269 (299)
Q Consensus       196 ~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd-~~~~~~~-~~  269 (299)
                      ..++++++..++...   ....+.++...  ....... ....+..-.|+++ ...+....+...+++. ..+++.. ..
T Consensus        28 s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~  104 (253)
T PF10647_consen   28 SPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE  104 (253)
T ss_pred             ceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence            457888888755443   33344454433  3322221 2236777888888 5555555566666663 3333322 22


Q ss_pred             eeccCCCCcEEEEEccCCCCeEEee
Q 022303          270 LRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       270 ~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      +........|..+.+||||..++.-
T Consensus       105 v~~~~~~~~I~~l~vSpDG~RvA~v  129 (253)
T PF10647_consen  105 VDWPGLRGRITALRVSPDGTRVAVV  129 (253)
T ss_pred             ecccccCCceEEEEECCCCcEEEEE
Confidence            2222211169999999999988754

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=83.40  E-value=4  Score=21.60  Aligned_cols=29  Identities=10%  Similarity=0.075  Sum_probs=23.1

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCC
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPN  152 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  152 (299)
                      .++.++.||.+.-.|.++|+.+..++...
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~   30 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP   30 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence            45666889999999999999888877543

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF01011 PQQ: PQQ enzyme repeat family

Probab=82.49  E-value=5.1  Score=21.18  Aligned_cols=29  Identities=7%  Similarity=0.091  Sum_probs=24.0

Q ss_pred             eEEEEeCCCcEEEEeCCCCceEEEeeccC
Q 022303          246 LIISGSSLGSIAISGLSSDQRVATLRSTD  274 (299)
Q Consensus       246 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  274 (299)
                      .+..++.+|.|.-.|.++|+.+..++...
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~   30 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP   30 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence            45667999999999999999988886543

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=82.41  E-value=25  Score=30.58  Aligned_cols=78  Identities=6%  Similarity=-0.119  Sum_probs=48.1

Q ss_pred             eeEEEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCccc-eeeeeccCCC---------------e--EEEecCC
Q 022303          154 ASLVDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFM-KGLCMRYFDP---------------E--AVVGCED  212 (299)
Q Consensus       154 ~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~-~~~~~~~~~~---------------~--l~s~~~d  212 (299)
                      ...++.+|++++.+ ...-|.|.++|+.+..  .++++..+... ++........               .  ++-+-.-
T Consensus       310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR  389 (415)
T PF14655_consen  310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR  389 (415)
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence            44588999988777 5556899999998864  33343333211 1111111111               1  2345667


Q ss_pred             CcEEEEEcCCcceeeeccc
Q 022303          213 GTARVFDMYSRKCSQIIRM  231 (299)
Q Consensus       213 ~~i~iwd~~~~~~~~~~~~  231 (299)
                      |.|.||++++|..+..+..
T Consensus       390 g~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  390 GILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             CeEEEEecCCCCEEEEEEe
Confidence            8899999999888777653

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=82.34  E-value=16  Score=31.79  Aligned_cols=134  Identities=12%  Similarity=0.011  Sum_probs=76.1

Q ss_pred             EEEecCCCEEEEEcCCeEEEEecCCce----eeeeccCCccce-e---eeeccCCCeEEEecCCCcEEEE-EcCCc-c--
Q 022303          157 VDFDFDESKIVGLIGTRICIWRRNGLR----SVFPSREGTFMK-G---LCMRYFDPEAVVGCEDGTARVF-DMYSR-K--  224 (299)
Q Consensus       157 ~~~~~~~~~l~~~~d~~i~v~d~~~~~----~~~~~~~~~~~~-~---~~~~~~~~~l~s~~~d~~i~iw-d~~~~-~--  224 (299)
                      +-..||++.+..-...++.++++.+..    +......+.... +   ...-..+..++.++.||.|.-| |.+.+ .  
T Consensus       226 llL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~  305 (733)
T COG4590         226 LLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPH  305 (733)
T ss_pred             hEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCc
Confidence            556899999885555888888887653    222222221110 1   1112224448889999999887 55432 2  


Q ss_pred             --eeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022303          225 --CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       225 --~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                        .++.++-...++..+.-..+ +-+++-+..|++..+..-..+.+ -++....  .+.-+++||++.+|++
T Consensus       306 l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l-L~~~~~~--~~~~~~~Sp~~~~Ll~  374 (733)
T COG4590         306 LNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL-LFERAYQ--APQLVAMSPNQAYLLS  374 (733)
T ss_pred             ceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce-ehhhhhc--CcceeeeCcccchhee
Confidence              12222222233443332233 56778888898888775433332 2222223  5677899999988875

>PRK10115 protease 2; Provisional

Probab=81.48  E-value=48  Score=31.19  Aligned_cols=104  Identities=4%  Similarity=-0.151  Sum_probs=59.2

Q ss_pred             EEEecCCCEEE-EEc-CC----eEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecC-C-----CcEEEEEcCCc-
Q 022303          157 VDFDFDESKIV-GLI-GT----RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-D-----GTARVFDMYSR-  223 (299)
Q Consensus       157 ~~~~~~~~~l~-~~~-d~----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d-----~~i~iwd~~~~-  223 (299)
                      +.++|++++|+ +.. +|    .+++.|+.++........+.. ..++|.+++..|+-... +     ..|..+++.++ 
T Consensus       132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~  210 (686)
T PRK10115        132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA  210 (686)
T ss_pred             EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh
Confidence            78899999988 322 23    788999987753322222222 24688888877544332 2     35788888877 


Q ss_pred             -ceeeeccccCCcee-EEEeCCC-CeEEEEeC---CCcEEEEeC
Q 022303          224 -KCSQIIRMHCAPVT-SLSLSED-QLIISGSS---LGSIAISGL  261 (299)
Q Consensus       224 -~~~~~~~~~~~~i~-~~~~~~~-~~l~~~~~---dg~i~iwd~  261 (299)
                       +....+........ .+..+.+ ++++..+.   ++.+.+++.
T Consensus       211 ~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        211 SQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             hHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence             33333432222222 3333434 54444333   457888884

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=81.27  E-value=48  Score=31.06  Aligned_cols=58  Identities=12%  Similarity=0.155  Sum_probs=33.5

Q ss_pred             CeEEEecCCCcEEEEEcCCc--c-eeeeccccCCceeEEEeCCC----C---eEEEEeCCCcEEEEeC
Q 022303          204 PEAVVGCEDGTARVFDMYSR--K-CSQIIRMHCAPVTSLSLSED----Q---LIISGSSLGSIAISGL  261 (299)
Q Consensus       204 ~~l~s~~~d~~i~iwd~~~~--~-~~~~~~~~~~~i~~~~~~~~----~---~l~~~~~dg~i~iwd~  261 (299)
                      ..+|+++....|.||-....  + ....-..+...|.+|+|-++    .   .+++++-.|.+.+|++
T Consensus       178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            33555555555555543321  1 11101125566888888753    2   6788888999988887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=81.05  E-value=4.6  Score=21.34  Aligned_cols=19  Identities=5%  Similarity=-0.075  Sum_probs=14.7

Q ss_pred             cEEEEEccCCCCeEEeeec
Q 022303          278 HIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       278 ~i~~~~~s~~g~~l~s~s~  296 (299)
                      .-....|||||++|+-++.
T Consensus        10 ~~~~p~~SpDGk~i~f~s~   28 (39)
T PF07676_consen   10 DDGSPAWSPDGKYIYFTSN   28 (39)
T ss_dssp             SEEEEEE-TTSSEEEEEEE
T ss_pred             cccCEEEecCCCEEEEEec
Confidence            5678899999999887664

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=80.57  E-value=38  Score=29.53  Aligned_cols=174  Identities=10%  Similarity=0.027  Sum_probs=75.4

Q ss_pred             EEEEEe-CCCcEEEEecCC----ceeEEEecC---C-----CceeEEEEecCCCEEE---EEcCC----eEEEEecCCce
Q 022303          124 LILTGV-GDKVMRLWSLEG----YKCVEEYSL---P-----NAASLVDFDFDESKIV---GLIGT----RICIWRRNGLR  183 (299)
Q Consensus       124 ~l~s~~-~dg~i~iwd~~~----~~~~~~~~~---~-----~~~~~~~~~~~~~~l~---~~~d~----~i~v~d~~~~~  183 (299)
                      +|+..+ ..+.|+|.|+.+    .+..+.++.   .     .....+..-|+|+.++   +..+|    .+.++|-++..
T Consensus        89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~  168 (461)
T PF05694_consen   89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE  168 (461)
T ss_dssp             EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred             cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence            666655 778999999873    345555552   1     1122355567887766   44333    56777766432


Q ss_pred             e--eeeccCCccc--eeeeeccCCCeE--------------------EEecCCCcEEEEEcCCcceeeeccccC--Ccee
Q 022303          184 S--VFPSREGTFM--KGLCMRYFDPEA--------------------VVGCEDGTARVFDMYSRKCSQIIRMHC--APVT  237 (299)
Q Consensus       184 ~--~~~~~~~~~~--~~~~~~~~~~~l--------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~i~  237 (299)
                      .  ......+...  .-+.+.+..+.+                    ..+....++.+||+.+.+.++++.-..  ..+.
T Consensus       169 v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pL  248 (461)
T PF05694_consen  169 VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPL  248 (461)
T ss_dssp             EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEE
T ss_pred             ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceE
Confidence            1  1111111000  011222222222                    223345789999999999999887332  3456


Q ss_pred             EEEeC--CC-Ce-EEEEeCCCcEEEE-eCCCCc----eEEEeeccC--------C-------CCcEEEEEccCCCCeEEe
Q 022303          238 SLSLS--ED-QL-IISGSSLGSIAIS-GLSSDQ----RVATLRSTD--------C-------TGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       238 ~~~~~--~~-~~-l~~~~~dg~i~iw-d~~~~~----~~~~~~~~~--------~-------~~~i~~~~~s~~g~~l~s  293 (299)
                      .+.|.  |+ .+ ++.+--..+|..| ....++    .+..+....        .       ..-|+.+..|.|.++|..
T Consensus       249 EvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYv  328 (461)
T PF05694_consen  249 EVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYV  328 (461)
T ss_dssp             EEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEE
T ss_pred             EEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEE
Confidence            67775  44 33 3333334455444 333332    233332110        0       115799999999999999


Q ss_pred             eecc
Q 022303          294 LCFL  297 (299)
Q Consensus       294 ~s~~  297 (299)
                      ++|.
T Consensus       329 s~W~  332 (461)
T PF05694_consen  329 SNWL  332 (461)
T ss_dssp             EETT
T ss_pred             Eccc
Confidence            8874

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=80.49  E-value=49  Score=32.19  Aligned_cols=105  Identities=10%  Similarity=0.099  Sum_probs=64.6

Q ss_pred             EEEecCCCEEEEEcCCeEEEEecCCceeeeeccCCc-cceeeeeccCCCeEEEecCCCcEEE--EEcCCcceeeecc--c
Q 022303          157 VDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGT-FMKGLCMRYFDPEAVVGCEDGTARV--FDMYSRKCSQIIR--M  231 (299)
Q Consensus       157 ~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~i~i--wd~~~~~~~~~~~--~  231 (299)
                      .+..|-...+.++....+++||+...+...+..... ...+..+......++.|...-.+.+  |+....+. ..+.  .
T Consensus       939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l-~~fadD~ 1017 (1205)
T KOG1898|consen  939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQL-IVFADDP 1017 (1205)
T ss_pred             eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeE-EEEeCCC
Confidence            667777777778999999999998775322222222 2224455556667888877666654  44443333 3332  3


Q ss_pred             cCCceeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022303          232 HCAPVTSLSLSEDQLIISGSSLGSIAISGLS  262 (299)
Q Consensus       232 ~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~  262 (299)
                      -...|+++.+-....+|.+..=|.+.+-.+.
T Consensus      1018 ~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1018 VPRHVTALELLDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             ccceeeEEEEecCCceeeccccCcEEEEECC
Confidence            3445666666554668888777777776553

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.32  E-value=23  Score=31.44  Aligned_cols=37  Identities=14%  Similarity=0.051  Sum_probs=27.6

Q ss_pred             ceeEEEeCCC----CeEEEEeCCCcEEEEeCCCCceEEEee
Q 022303          235 PVTSLSLSED----QLIISGSSLGSIAISGLSSDQRVATLR  271 (299)
Q Consensus       235 ~i~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~  271 (299)
                      .+..++|+|+    ..|..-+.|..|++||+.....+....
T Consensus       167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqp  207 (741)
T KOG4460|consen  167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQP  207 (741)
T ss_pred             eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccC
Confidence            4567889986    468888889999999997665554433

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=80.10  E-value=32  Score=28.27  Aligned_cols=150  Identities=11%  Similarity=0.006  Sum_probs=88.4

Q ss_pred             cCeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEec-CCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceee-eecc
Q 022303          113 VGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV-FPSR  189 (299)
Q Consensus       113 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~-~~~~  189 (299)
                      +-+..+.+..++...+.++.-+++.|+.+...-..+. .+..-..-.+.-.|++.. +..+.-+.+.|+.++... +...
T Consensus        87 ~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagr  166 (370)
T COG5276          87 DLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGR  166 (370)
T ss_pred             hhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeee
Confidence            3455567777888888899999999998754322221 122234555666788877 665777888898876421 1111


Q ss_pred             C-CccceeeeeccCCCeEEEecCCCcEEEEEcCCcc---eeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC
Q 022303          190 E-GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK---CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD  264 (299)
Q Consensus       190 ~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~  264 (299)
                      . ........+.-.+++...+..|+-+.+.|+....   .+... .....+.++..+++ .+++.. ..| +.+-|..+.
T Consensus       167 ya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsdnr~y~vvy-~eg-vlivd~s~~  243 (370)
T COG5276         167 YALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSDNRAYLVVY-DEG-VLIVDVSGP  243 (370)
T ss_pred             eccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecCCeeEEEEc-ccc-eEEEecCCC
Confidence            1 1111012344457776777788899999987543   22222 22336788888888 444433 233 556665543


Q ss_pred             c
Q 022303          265 Q  265 (299)
Q Consensus       265 ~  265 (299)
                      +
T Consensus       244 s  244 (370)
T COG5276         244 S  244 (370)
T ss_pred             C
Confidence            3

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	299
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	2e-12
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	1e-06
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	7e-05
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	2e-08
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	1e-04
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-08
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	9e-08
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-07
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-06
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	9e-06
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-05
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	9e-08
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	6e-06
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	1e-07
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	2e-05
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	2e-07
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	3e-07
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	7e-05
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	1e-06
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	1e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-06
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	3e-06
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	3e-06
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	3e-04
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	4e-04
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	5e-04
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	8e-06
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	6e-05
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	7e-04
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	1e-05
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	1e-05
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	3e-05
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	4e-04
3ow8_A	321	WD repeat-containing protein 61; structural genomi	2e-05
3ow8_A	321	WD repeat-containing protein 61; structural genomi	4e-05
3ow8_A	321	WD repeat-containing protein 61; structural genomi	5e-05
3ow8_A	321	WD repeat-containing protein 61; structural genomi	2e-04
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	3e-05
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	2e-04
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	3e-05
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	6e-05
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	6e-05
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	3e-04
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	3e-05
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	3e-05
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	4e-05
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	6e-05
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	5e-05
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	2e-04
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	3e-04
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	4e-04
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	7e-05
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	1e-04
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	1e-04
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	1e-04
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	3e-04
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	1e-04
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	5e-04
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	1e-04
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	9e-04
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	2e-04
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	2e-04
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	3e-04
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	4e-04
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	4e-04
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	5e-04
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	5e-04
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	6e-04
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	6e-04
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	7e-04
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	7e-04
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	9e-04
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	8e-04

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 34/262 (12%), Positives = 80/262 (30%), Gaps = 49/262 (18%)

Query: 24  IESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMR 83
           I  L  ++   + S L   DL++ +  C+ W  +     L +    +            +
Sbjct: 19  ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRK 78

Query: 84  LHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYK 143
           +                       WK+                     ++   W     K
Sbjct: 79  VIKPGFIH--------------SPWKSAY---------------IRQHRIDTNWRRGELK 109

Query: 144 CVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKG-----L 197
             +     +   +    F  ++IV G     + +W     + +        + G      
Sbjct: 110 SPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT------LVGHTGGVW 163

Query: 198 CMRYFDPEAVV-GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSI 256
             +      ++ G  D T +V++  + +C   +  H + V  + L  ++ ++SGS   ++
Sbjct: 164 SSQ-MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH-EKRVVSGSRDATL 221

Query: 257 AISGLSSDQRVATLRSTDCTGH 278
            +  + + Q +  L      GH
Sbjct: 222 RVWDIETGQCLHVLM-----GH 238

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 17/81 (20%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 202 FDPEAVV-GCEDGTARVFDMYSRKCSQIIR---MHCAPVTSLSLSEDQLIISGSSLGSIA 257
                +V G  D T +++D+ + +C Q ++    H + VT L  +++  +I+ S  G++ 
Sbjct: 327 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF-VITSSDDGTVK 385

Query: 258 ISGLSSDQRVATLRSTDCTGH 278
           +  L + + +  L + +  G 
Sbjct: 386 LWDLKTGEFIRNLVTLESGGS 406

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 202 FDPEAVV-GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISG 260
           FD   VV G  D + RV+D+ +  C   +  H +  + + L ++ +++SG++  ++ I  
Sbjct: 287 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN-ILVSGNADSTVKIWD 345

Query: 261 LSSDQRVATLR-STDCTGHIICL 282
           + + Q + TL+        + CL
Sbjct: 346 IKTGQCLQTLQGPNKHQSAVTCL 368

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 42/228 (18%), Positives = 75/228 (32%), Gaps = 34/228 (14%)

Query: 35  IFSSLGFFDLVRCSAVCKSWNAIINRCKLLQ-LLYCKLHGFSNTSGSSMR--LHLEELAM 91
           I S L    L     VCK W  + +   L + L+   +   S   G + R          
Sbjct: 26  ILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKN 85

Query: 92  KHHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLP 151
           K               +           ++         + +   W    +     +   
Sbjct: 86  KPPDGNAPPNSFYRALYPKI--------IQDI-------ETIESNWRCGRHSLQRIHCRS 130

Query: 152 NAASLVD-FDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKG-----LCMRYFDP 204
             +  V    +D+ KIV GL    I IW +N L           + G     LC+  +D 
Sbjct: 131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRI------LTGHTGSVLCL-QYDE 183

Query: 205 EAVV-GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGS 251
             ++ G  D T RV+D+ + +    +  HC  V  L  + + ++++ S
Sbjct: 184 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN-NGMMVTCS 230

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 202 FDPEAVV-GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISG 260
           +    VV G  D T R++D+    C +++  H   V  +    ++ I+SG+  G I +  
Sbjct: 304 YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD-NKRIVSGAYDGKIKVWD 362

Query: 261 LSSDQRVATLRSTDC----TGH 278
           L +         T C      H
Sbjct: 363 LVAALDPRAPAGTLCLRTLVEH 384

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 23/170 (13%), Positives = 52/170 (30%), Gaps = 33/170 (19%)

Query: 124  LILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESKIV-GLIGTRICIWR--- 178
             +  G  D  +++  L   +          A   + F  D   ++     + I +W    
Sbjct: 975  YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034

Query: 179  ---------RNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII 229
                     +  ++     ++                +    DGT +V+++ + +  +  
Sbjct: 1035 GDYVFLQAHQETVKDFRLLQDSRL-------------LSWSFDGTVKVWNVITGRIERDF 1081

Query: 230  RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGH 278
              H   V S ++S D     S S+  +  I        +  L+     GH
Sbjct: 1082 TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK-----GH 1126

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 52.5 bits (126), Expect = 9e-08
 Identities = 25/174 (14%), Positives = 53/174 (30%), Gaps = 32/174 (18%)

Query: 124  LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWR---- 178
             +++   D V+++W+ +    V   +            D S+++       + +W     
Sbjct: 1017 TLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQD-SRLLSWSFDGTVKVWNVITG 1075

Query: 179  ---------RNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII 229
                     +  + S   S + T                   D TA+++          +
Sbjct: 1076 RIERDFTCHQGTVLSCAISSDATKF------------SSTSADKTAKIWSFDLLSPLHEL 1123

Query: 230  RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDC----TGH 278
            + H   V   + S D  L+ +G   G I I  +S  Q + +            H
Sbjct: 1124 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATH 1177

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 23/164 (14%), Positives = 54/164 (32%), Gaps = 26/164 (15%)

Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESKIV-GLIGTRICIWR--- 178
            I +   DK ++++  E  + + +            F  D+S I       ++ IW    
Sbjct: 629 RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688

Query: 179 ----------RNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI 228
                        +     + +   +              G  D   +++D+  ++C   
Sbjct: 689 GKLVHTYDEHSEQVNCCHFTNKSNHLL----------LATGSNDFFLKLWDLNQKECRNT 738

Query: 229 IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLR 271
           +  H   V     S D +L+ S S+ G++ +  + S     ++ 
Sbjct: 739 MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSIN 782

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 27/148 (18%)

Query: 124  LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIW---- 177
              LT   D+ +R+W  +         L      V F  +E+ ++    I   + +     
Sbjct: 896  SFLTASDDQTIRVWETKKVCKNSAIVLKQEID-VVFQENETMVLAVDNIRG-LQLIAGKT 953

Query: 178  ------RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM 231
                      +     S    ++              G EDG  ++ ++ + +       
Sbjct: 954  GQIDYLPEAQVSCCCLSPHLEYV------------AFGDEDGAIKIIELPNNRVFSSGVG 1001

Query: 232  HCAPVTSLSLSED-QLIISGSSLGSIAI 258
            H   V  +  + D + +IS S    I +
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQV 1029

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 46.0 bits (109), Expect = 9e-06
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 6/73 (8%)

Query: 207 VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ 265
                D T +VF   + +    I+ H   V   + S D   I + S+   + I   ++ +
Sbjct: 631 ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK 690

Query: 266 RVATLRSTDCTGH 278
            V T        H
Sbjct: 691 LVHTYD-----EH 698

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 24/157 (15%), Positives = 49/157 (31%), Gaps = 34/157 (21%)

Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR 183
           L+ +   D  +RLW +               S+    F  S         + +       
Sbjct: 757 LLASCSADGTLRLWDVRSANER--------KSINVKRFFLSSEDPPEDVEVIVK------ 802

Query: 184 SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-CSQIIRMHCAPVTSLSLS 242
               S +G  +            +V  ++    +FD+++    ++I   H + +     S
Sbjct: 803 CCSWSADGDKI------------IVAAKNKV-LLFDIHTSGLLAEIHTGHHSTIQYCDFS 849

Query: 243 ED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGH 278
               L +   S   + +  + S  +VA  R     GH
Sbjct: 850 PYDHLAVIALSQYCVELWNIDSRLKVADCR-----GH 881

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 51.9 bits (125), Expect = 9e-08
 Identities = 31/220 (14%), Positives = 59/220 (26%), Gaps = 66/220 (30%)

Query: 35  IFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRL--HLEELAMK 92
           IF+ L F D++    V ++WN II                      S  L   L      
Sbjct: 26  IFNYLQFEDIINSLGVSQNWNKIIR--------------------KSTSLWKKLLISENF 65

Query: 93  HHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPN 152
                     + + Q        D+ R     +       +++ W    +          
Sbjct: 66  VSPKGFNSLNLKLSQKYPKLSQQDRLR-----LSFLENIFILKNWYNPKFVPQ------- 113

Query: 153 AASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
                           L G          + +     +                + G +D
Sbjct: 114 -------------RTTLRG------HMTSVITCLQFEDNYV-------------ITGADD 141

Query: 213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSS 252
              RV+D  ++K    +  H   V +L  +   +++SGS+
Sbjct: 142 KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGST 181

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 28/158 (17%)

Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVG--LIGTRICIWRRNG 181
            I+TG  D  + +W L     V ++   +   LV    +E+      L G          
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG------HMAS 272

Query: 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSL 241
           +R+V  S  G  +            V G  D T  V+D+   KC  I+  H   + S   
Sbjct: 273 VRTV--SGHGNIV------------VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318

Query: 242 SED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGH 278
             + +  IS S   +I I  L + + + TL+     GH
Sbjct: 319 DHERKRCISASMDTTIRIWDLENGELMYTLQ-----GH 351

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 23/152 (15%), Positives = 49/152 (32%), Gaps = 24/152 (15%)

Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-------GLIGTRICI 176
             +TG  D  ++LW +   +CV  +  P     V+F    +  +          G+ I I
Sbjct: 88  YCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGS-INI 146

Query: 177 WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVV--------------GCEDGTARVFDMYS 222
           +      +     + +      +   +                   G +DG    +D+ +
Sbjct: 147 YEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206

Query: 223 -RKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252
             +    I +H   ++ +  S D    I+ S 
Sbjct: 207 NYEYVDSIDLHEKSISDMQFSPDLTYFITSSR 238

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 9/66 (13%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 207 VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ 265
           +    D  + + D+ + +  +     C P+ +  ++   + II G    +  ++  S+++
Sbjct: 234 ITSSRDTNSFLVDVSTLQVLKKYETDC-PLNTAVITPLKEFIILGGGQEAKDVTTTSANE 292

Query: 266 RVATLR 271
                R
Sbjct: 293 GKFEAR 298

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 14/44 (31%), Positives = 25/44 (56%)

Query: 16 RSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIIN 59
          R + P  + +SL  +++  IFS L   +L++ S VCK W  + +
Sbjct: 1  RENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 50.1 bits (119), Expect = 3e-07
 Identities = 22/171 (12%), Positives = 51/171 (29%), Gaps = 12/171 (7%)

Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPN------AASLVDFDFDESKIVGLIGTRICIW 177
           + +    D  +    L+  K +   + PN        +++        ++   G +I I 
Sbjct: 50  VCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITIL 109

Query: 178 RRNGLRSVFPSREGTFMKGLCMRYFDPEA----VVGCEDGTARVFDMYSRKCSQIIRMH- 232
                + +      +  + + M   +       +     GT             +     
Sbjct: 110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS 169

Query: 233 CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICL 282
               +S  L +D  L+   S  G + +  LSS  + ++    D    I  +
Sbjct: 170 DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEV 220

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 42.8 bits (100), Expect = 7e-05
 Identities = 12/165 (7%), Positives = 40/165 (24%), Gaps = 13/165 (7%)

Query: 125 ILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGT-----RICIWRR 179
           +L       + +   +  K + E  + +A  ++                     I     
Sbjct: 97  LLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY 156

Query: 180 NGLRSVFPSREGTFMKGLCMRYFDPE---AVVGCEDGTARVFDMYSRKCSQIIRM--HCA 234
                       + ++         +     +   DG   V+++ S   +         A
Sbjct: 157 EDDSQYIVHSAKSDVEYSSGV-LHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA 215

Query: 235 PVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGH 278
            +  +  +++   ++      ++    L  D       +      
Sbjct: 216 KIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEF 259

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 48.4 bits (114), Expect = 1e-06
 Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 1/91 (1%)

Query: 6   SSRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVR-CSAVCKSWNAIINRCKLL 64
             +     ++  ++    +  L   ++  + + L   +LV+ C  VC  W  +++   L 
Sbjct: 33  EEQLREAEEEEEAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLW 92

Query: 65  QLLYCKLHGFSNTSGSSMRLHLEELAMKHHR 95
            L   +       S    R H ++      R
Sbjct: 93  LLKCQQEGLVPEGSADEERDHWQQFYFLSKR 123

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 17/167 (10%), Positives = 51/167 (30%), Gaps = 23/167 (13%)

Query: 122 RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-----VDFDFDESKIVGLIGTR--- 173
           + L++       + ++ +   + +    + N+        +  D +   ++  +GT    
Sbjct: 182 KSLLVALTNLSRVIIFDIRTLERL--QIIENSPRHGAVSSICIDEECCVLI--LGTTRGI 237

Query: 174 ICIW-RRNGLR-SVFPSREGTFMKGLCMRYFDPE----AVVGCEDGTARVFDMYSRKCSQ 227
           I IW  R  +    +   +   +  + +  F  +     V G       +++     C  
Sbjct: 238 IDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQY 297

Query: 228 IIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTD 274
                    +               L  +   G+ S   ++T+  ++
Sbjct: 298 AFINSDEQPSMEHFLPI-----EKGLEELNFCGIRSLNALSTISVSN 339

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 17/60 (28%), Positives = 28/60 (46%)

Query: 16 RSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFS 75
          R + P  + +SL  +++  IFS L   +L++ S VCK W  + +   L Q L        
Sbjct: 1  RENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH 60

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 47.4 bits (112), Expect = 3e-06
 Identities = 17/168 (10%), Positives = 49/168 (29%), Gaps = 27/168 (16%)

Query: 124 LILTGVGDKVMRLWSLEG-----YKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIW 177
           LI     DK + ++ ++       K  + +      + +    D++ ++       +   
Sbjct: 117 LIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176

Query: 178 RRNGLRSVFPSREGTFMKG--------------LCMRYFDPEAVVGCEDGTARVFDMYSR 223
             N +           + G                 ++     +    D   ++      
Sbjct: 177 DINSIPE--EKFTQEPILGHVSMLTDVHLIKDSDGHQFI----ITSDRDEHIKISHYPQC 230

Query: 224 KC-SQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATL 270
               + +  H   V+S+   +D L++S      I      + + ++T 
Sbjct: 231 FIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTF 278

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 29/169 (17%), Positives = 53/169 (31%), Gaps = 56/169 (33%)

Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR 183
              T   D  +R+W +   KCV++++L                                 
Sbjct: 266 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQ-----------------------QV 302

Query: 184 SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE 243
            V  +  G               +    DGT   +++   +  + I  H   +T+L+++ 
Sbjct: 303 GVVATGNGRI-------------ISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP 349

Query: 244 DQLIISGSSLGSI----AISGL------------SSDQRVATLRSTDCT 276
              +ISGS  G I    + S              S  Q  +++ S D T
Sbjct: 350 ---LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSI-SWDDT 394

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 15/143 (10%)

Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGL 182
            +  G   +V +L  LE    ++   L    S +     E+ I  G +  +I ++     
Sbjct: 462 GLEEGNTIQVFKLSDLEVSFDLKT-PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR 520

Query: 183 RSVFPSREG--------TF---MKGLCMRYFDPEAVV-GCEDGTARVFDMYS-RKCSQII 229
                            ++    KG      + + V  G  D    ++ +    K  + +
Sbjct: 521 EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL 580

Query: 230 RMHCAPVTSLSLSEDQLIISGSS 252
             H   V +L       ++S  +
Sbjct: 581 NAHKDGVNNLLWETPSTLVSSGA 603

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 17/166 (10%), Positives = 36/166 (21%), Gaps = 51/166 (30%)

Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL---------VDFDFDESKIVGLIGTRI 174
            + +G     + +W     K      +   +           + +DF+        G R+
Sbjct: 80  YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE--------GRRL 131

Query: 175 CIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA 234
           C                               V    D         S      +  H  
Sbjct: 132 C------------------------------VVGEGRDNFGVFISWDSGNSLGEVSGHSQ 161

Query: 235 PVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGH 278
            + +  L +      ++    GS+        +  A+ R       
Sbjct: 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR--THHKQ 205

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 20/141 (14%), Positives = 47/141 (33%), Gaps = 19/141 (13%)

Query: 123 GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWR-RNG 181
               +   D  +++  +  ++   +        +   + D    V      + I +   G
Sbjct: 384 QEYSSISWDDTLKVNGITKHEFGSQP------KVASANNDGFTAVLTNDDDLLILQSFTG 437

Query: 182 --LRSVFPSREGTFMKGLCMRYFDPEAVV---GCEDGTARVFDMYSRKCSQIIRMHCAPV 236
             ++SV  +  G+ +  L     +  AV    G      ++ D+       +     A  
Sbjct: 438 DIIKSVRLNSPGSAV-SLS---QNYVAVGLEEGNTIQVFKLSDLEVSFD--LKTPLRAKP 491

Query: 237 TSLSLSED-QLIISGSSLGSI 256
           + +S+S     I +G  +G I
Sbjct: 492 SYISISPSETYIAAGDVMGKI 512

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 45.6 bits (109), Expect = 8e-06
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 207 VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSS 252
           V   ED T R++   +    Q+I +    + S+    +  II GSS
Sbjct: 240 VSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSS 285

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGL---SSD 264
              DGT R++    +    ++      + S+    + +L++ G     I    L   S +
Sbjct: 35  VSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGE 94

Query: 265 QRVATLRSTDCTGH 278
             + TL      GH
Sbjct: 95  DPLYTLI-----GH 103

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVA 268
              DG  ++ DM++    +    H + V  + L  +  I+S     ++ I    +     
Sbjct: 201 CSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQ 260

Query: 269 TLRSTDCTGH 278
            +     T  
Sbjct: 261 VI-----TLP 265

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 25/179 (13%), Positives = 48/179 (26%), Gaps = 37/179 (20%)

Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDESKIV----GLIGTRICI 176
              +G     +R+W       + + ++P        + +D +  +I     G       +
Sbjct: 73  YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF-GHV 131

Query: 177 WR-------------RNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS 222
           +                 + SV F      F             + G +D T  +F+   
Sbjct: 132 FLFDTGTSNGNLTGQARAMNSVDF-KPSRPFR-----------IISGSDDNTVAIFEGPP 179

Query: 223 RKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTD--CTGH 278
            K       H   V S+  + D  L  S    G+I +       +             H
Sbjct: 180 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 238

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 17/165 (10%)

Query: 123 GLILTGVGDKVMRLWSLEGYKCVEE----YSLPNAASLVDFDFDESKIVGLIGTRICIWR 178
           G + T   D  +++    G            L +    +    D    V      I I+ 
Sbjct: 379 GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 438

Query: 179 RNGLRSVFPSREGTFMKGLCMRYFDPE---AVVGCEDGTARVFDMYSRKCSQI-IRMHCA 234
              L  V  S   + +          +     VG +D    V+ +     S++   +H A
Sbjct: 439 HGKLTEVPISYNSSCVA------LSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 492

Query: 235 PVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGH 278
            +TS++ S +   +++      +    ++++  +A   S   T H
Sbjct: 493 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW--TFH 535

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSI 256
              +G     +       Q+   H   +T+LS S D + + S  + G I
Sbjct: 300 ISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHI 348

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 15/147 (10%), Positives = 45/147 (30%), Gaps = 31/147 (21%)

Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS--LVDFDFDESKIV--GLIGTRICIW-- 177
            I +   DK +++W++   K  +   +        +   + +  +V     G  I     
Sbjct: 253 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF-INFVNP 311

Query: 178 -----------RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS 226
                          + ++  S +G  +                 +G    +D+ +   +
Sbjct: 312 ELGSIDQVRYGHNKAITALSSSADGKTL------------FSADAEGHINSWDISTGISN 359

Query: 227 QII-RMHCAPVTSLSLSEDQLIISGSS 252
           ++   +H   +T +  +    + + S 
Sbjct: 360 RVFPDVHATMITGIKTTSKGDLFTVSW 386

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267
           G  DG   +FD+ + K    +  H  P+ SL+ S D QL+++ S  G I I  +      
Sbjct: 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA 241

Query: 268 ATLRSTDCTGH 278
            TL      GH
Sbjct: 242 GTLS-----GH 247

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 43.2 bits (103), Expect = 4e-05
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267
           G   G   +F + S K    +      + S++ S D + + SG+  G I I  +++ + +
Sbjct: 140 GTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL 199

Query: 268 ATLRSTDCTGH 278
            TL      GH
Sbjct: 200 HTLE-----GH 205

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 43.2 bits (103), Expect = 5e-05
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267
              D   R++D+ + K  + I        +L+ S D Q + +G+ +G + I G+ S ++ 
Sbjct: 98  SSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE 157

Query: 268 ATLRSTDCTGH 278
            +L        
Sbjct: 158 YSLD-----TR 163

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267
             +DG  +++D+     +  +  H + V +++   D    +S SS  S+ +  + +   V
Sbjct: 224 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283

Query: 268 ATLRSTDCTGH 278
            T        H
Sbjct: 284 HTF-----FDH 289

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 22/160 (13%), Positives = 52/160 (32%), Gaps = 39/160 (24%)

Query: 124 LILTGVGDKVMRLWSLEGYKCVEEY----SLPNAASLVDFDFDESKIVGLIGTRICIWRR 179
            I++   + V  LW++     ++ +    +  ++ +  +   D S  V            
Sbjct: 163 HIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGV------------ 210

Query: 180 NGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSL 239
                V    +  F             V+    G   V+ +  +  +  +  H  P++ L
Sbjct: 211 ----DVEWVDDDKF-------------VIPGPKGAIFVYQITEKTPTGKLIGHHGPISVL 253

Query: 240 SLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGH 278
             ++  +L++S S  G++ I    +             GH
Sbjct: 254 EFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY-----GH 288

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVA 268
             +DGT R++   +         H   + S S   D  +IS S  GS+ +  L  +  +A
Sbjct: 265 ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLA 324

Query: 269 TLRSTDCTGH 278
                     
Sbjct: 325 LS-----IVD 329

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 23/164 (14%), Positives = 53/164 (32%), Gaps = 41/164 (25%)

Query: 124 LILTGVGDKVMRLWSLEGYKCVEE--------YSLPNAASLVDFDFDESKIVGLIGTRIC 175
           LI +   D+ +R+W +   +C  E                 + +  +         +   
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVEC-------ISWAPE--------SSYSS 292

Query: 176 IWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP 235
           I    G  +    + G F+            + G  D T +++D+ +  C   +  H   
Sbjct: 293 ISEATGSETKKSGKPGPFL------------LSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340

Query: 236 VTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGH 278
           V  +      + I+S +   ++ +    + + + TL       H
Sbjct: 341 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-----AH 379

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 33/173 (19%), Positives = 64/173 (36%), Gaps = 37/173 (21%)

Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDESKIVGLIGTR---ICIW 177
           L+ +   D  ++LW  +G++C+   ++    +  S V    +   IV    +R   I +W
Sbjct: 164 LLASCSADMTIKLWDFQGFECIR--TMHGHDHNVSSVSIMPNGDHIVS--ASRDKTIKMW 219

Query: 178 R-------------RNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK 224
                         R  +R V P+++GT +                 D T RV+ + +++
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLI------------ASCSNDQTVRVWVVATKE 267

Query: 225 CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCT 276
           C   +R H   V  +S + +        + GS           + +  S D T
Sbjct: 268 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS-GSRDKT 319

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267
              D T +++++ +  C +    H   V  +  ++D  LI S S+  ++ +  +++ +  
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 269

Query: 268 ATLRSTDCTGH 278
           A LR      H
Sbjct: 270 AELR-----EH 275

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267
             ED T +V+D  +    + ++ H   V  +S     +L+ S S+  +I +      + +
Sbjct: 126 ASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI 185

Query: 268 ATLRSTDCTGH 278
            T+      GH
Sbjct: 186 RTMH-----GH 191

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 32/200 (16%), Positives = 62/200 (31%), Gaps = 49/200 (24%)

Query: 98  LEEGRIDIDQWKAHSVGVDQCRMKRGL--------ILTGVGDKVMRLWSLEGYKCV---- 145
           LE   + +   K H   ++      GL        I+TG  D  +++W            
Sbjct: 97  LEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM 156

Query: 146 ------EEYSLPNAASLVDFDFDESKIV--GLIGTRICIWR------------RNGLRSV 185
                  +      A    ++ +E  +      G  I ++             +NG+ S+
Sbjct: 157 EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD-IKLFDLRNMALRWETNIKNGVCSL 215

Query: 186 FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-----KCSQIIRMHCAPVTSLS 240
              R+   M  L         V    +G   VFDM ++       S   + H + V  + 
Sbjct: 216 EFDRKDISMNKL---------VATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVR 266

Query: 241 LSED--QLIISGSSLGSIAI 258
                 +L ++    G + +
Sbjct: 267 HLPQNRELFLTAGGAGGLHL 286

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 8/127 (6%)

Query: 145 VEEYSLPNAASLVDFDFDESKI-VGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFD 203
             +Y + +      FDF ++ + +  +   + I+ +  +  V    + + +K +    F 
Sbjct: 11  TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMR---FV 67

Query: 204 PEA--VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG 260
                VV     T  V  +YS+K    + +    +TS+        ++ G   GS+ +  
Sbjct: 68  KGIYLVVINAKDTVYVLSLYSQKVLTTVFVP-GKITSIDTDASLDWMLIGLQNGSMIVYD 126

Query: 261 LSSDQRV 267
           +  DQ  
Sbjct: 127 IDRDQLS 133

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 44.1 bits (103), Expect = 4e-05
 Identities = 20/191 (10%), Positives = 50/191 (26%), Gaps = 32/191 (16%)

Query: 123 GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKI-VGLIGTRICIW---- 177
             ++       + + SL   K +    +P   + +D D     + +GL    + ++    
Sbjct: 70  IYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDR 129

Query: 178 --------RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII 229
                         S FP+   + +  +     D   V+   +     + +   +  Q  
Sbjct: 130 DQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSF 189

Query: 230 RMHCAP------------------VTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATL 270
                P                  V       +   II+     S+     +S   +   
Sbjct: 190 IYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMAR 249

Query: 271 RSTDCTGHIIC 281
              +   ++  
Sbjct: 250 TVFETEINVPQ 260

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 16/191 (8%), Positives = 51/191 (26%), Gaps = 16/191 (8%)

Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR 183
           L+        + ++  +  + V +    +A   + F      +V      + +      +
Sbjct: 31  LLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQK 90

Query: 184 SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII-----------RMH 232
            +        +  +         ++G ++G+  V+D+   + S                 
Sbjct: 91  VLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR 150

Query: 233 CAPVTSLSLS-EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL--- 288
            +P+ S+  +  D   +  S         L  ++   +                +     
Sbjct: 151 LSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKR 210

Query: 289 -HMLFFLCFLP 298
              +    + P
Sbjct: 211 TPKVIQSLYHP 221

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 2/71 (2%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267
             +DG   ++D Y+      I +  + V + + +     +  G      +I  L + +  
Sbjct: 73  ASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN 132

Query: 268 ATLRSTDCTGH 278
             +      GH
Sbjct: 133 VRVSRE-LAGH 142

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267
           G  D +A+++D+    C Q    H + + ++    +     +GS   +  +  L +DQ +
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261

Query: 268 ATLRSTDCTGHI 279
            T    +    I
Sbjct: 262 MTYSHDNIICGI 273

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 207 VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ 265
           V    D T  ++D+ + + +     H   V SLSL+ D +L +SG+   S  +  +    
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217

Query: 266 RVATLRSTDCTGH 278
              T      TGH
Sbjct: 218 CRQTF-----TGH 225

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 209 GCEDGTARVFDMYSR----KCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSD 264
           G  D    ++++ +R    + S+ +  H   ++     +D  I++ S   + A+  + + 
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG 174

Query: 265 QRVATLRSTDCTGH 278
           Q+  T       GH
Sbjct: 175 QQTTTFT-----GH 183

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 42.8 bits (100), Expect = 7e-05
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 22 ATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIIN 59
          +T+  L  D+   I S L   DL +  +    WN  + 
Sbjct: 3  STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVR 40

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 5/80 (6%), Positives = 20/80 (25%), Gaps = 8/80 (10%)

Query: 202 FDP--EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI 258
                      +  T  ++ +   K  + +++    + ++   +D  +  +        +
Sbjct: 33  NCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVL 92

Query: 259 SGLSSDQRVATLRSTDCTGH 278
                    A         H
Sbjct: 93  KFAQYTGAHAIAG-----RH 107

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 4/45 (8%), Positives = 6/45 (13%), Gaps = 1/45 (2%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252
                 A +          I   H     +  L            
Sbjct: 84  RPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLIL 128

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 4/79 (5%), Positives = 10/79 (12%), Gaps = 9/79 (11%)

Query: 209 GCEDGTARVFDMYSRK-------CSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAIS 259
                                   +            + +  +       G     +A  
Sbjct: 126 LILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARM 185

Query: 260 GLSSDQRVATLRSTDCTGH 278
            L     +      D    
Sbjct: 186 VLQMRGTILPGHKWDVMVD 204

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 16/164 (9%), Positives = 49/164 (29%), Gaps = 29/164 (17%)

Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWR---- 178
            +     D    L++       +     +  ++        + + G     I +      
Sbjct: 70  HLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN 129

Query: 179 ---------RNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI 228
                     + +  + F    G  +            +   +D   +++ +      + 
Sbjct: 130 LQREIDQAHVSEITKLKF-FPSGEAL------------ISSSQDMQLKIWSVKDGSNPRT 176

Query: 229 IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLR 271
           +  H A VT +++ +  + ++S S  G+I +    +   + T  
Sbjct: 177 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 220

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 7/73 (9%)

Query: 207 VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ 265
                DG   +F+   R  S++++         +     +  I G++ G I +   + + 
Sbjct: 72  YKARLDGHDFLFNTIIRDGSKMLK-RADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL 130

Query: 266 RVATLRSTDCTGH 278
           +    +      H
Sbjct: 131 QREIDQ-----AH 138

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 2/72 (2%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267
             +DG   V+D ++      + M C  V + + +     I  G      ++  L+ D+  
Sbjct: 82  SSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE 141

Query: 268 ATLRSTD-CTGH 278
                      H
Sbjct: 142 NMAAKKKSVAMH 153

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 39.5 bits (93), Expect = 9e-04
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267
           G  D  A V+DM S +C Q    H + V S+          SGS   +  +  L +D+ V
Sbjct: 216 GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275

Query: 268 ATLR 271
           A   
Sbjct: 276 AIYS 279

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 20/182 (10%), Positives = 43/182 (23%), Gaps = 26/182 (14%)

Query: 123 GLILTGVGDKVMRLWSLEGYKC-----------VEEYSLPNAASLVDFDFDESKIV-GLI 170
           G +     +  +    +                    SL ++          + +V G  
Sbjct: 226 GCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFK 285

Query: 171 GTRICIWRRNGLRSVFPSREGTFMKG----LCMRYFDPE---AVVGCEDGTARVFDMYSR 223
              +  +  +      PS            +   Y D E         DG   +F+    
Sbjct: 286 NGFVAEF--DLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI 343

Query: 224 KCSQII--RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHII 280
             ++    R   + +  +         I      S+      +   V  L S +    I 
Sbjct: 344 ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE--TTIT 401

Query: 281 CL 282
            +
Sbjct: 402 AI 403

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 27/178 (15%), Positives = 55/178 (30%), Gaps = 42/178 (23%)

Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIW----- 177
             +    D ++        + +   +       V        +  G  G  + +W     
Sbjct: 24  QPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISHP 82

Query: 178 -------------RRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR 223
                        R N +RS      +G  +            +VG E  T  ++D+ + 
Sbjct: 83  GNKSPVSQLDCLNRDNYIRSCKL-LPDGCTL------------IVGGEASTLSIWDLAAP 129

Query: 224 --KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGH 278
             +    +        +L++S D ++  S  S G+IA+  L +   V   +     GH
Sbjct: 130 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-----GH 182

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 197 LCMRYFDPE---AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE--DQLIISGS 251
           LC  + D       VG   G     D+      Q +  + A +    + +  D  +I+ S
Sbjct: 60  LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252
              DG    +D  +R   +       P+++   + +  +    SS
Sbjct: 291 VGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASS 335

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 202 FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252
              E V      T  V+ +YS +   +++ H   V       + Q + SGS 
Sbjct: 303 CSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSR 354

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267
              D   + +++   +       H + + +L+ S D  LI S    G I +  L++ + +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231

Query: 268 ATLRSTD 274
            TL + D
Sbjct: 232 YTLSAQD 238

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267
             +D T +++D  ++ C   +  H + V+         +IISGS  G++ I   S+ +  
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263

Query: 268 ATLR 271
            TL 
Sbjct: 264 KTLN 267

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267
           G ED   R++D+ +RK   I++ H   + SL        ++SGS   ++ I  L + Q  
Sbjct: 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS 200

Query: 268 ATLRSTD 274
            TL   D
Sbjct: 201 LTLSIED 207

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 20/179 (11%), Positives = 46/179 (25%), Gaps = 23/179 (12%)

Query: 123 GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGL 182
            +       +V+ +W     + V    +     + D       IV   G  I +++    
Sbjct: 72  YVAFVTGVKEVVHIWDDVKKQDVSRIKVDA--PVKDLFLSREFIVVSYGDVISVFKFGNP 129

Query: 183 RSVFPSREGTFMKGLCMRYFDPEAVVGCED-----------------GTARVFDMYSRKC 225
                  +     G+C             +                     V        
Sbjct: 130 WKRI--TDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGK 187

Query: 226 SQIIRMHCAPVTSLSLSED-QLIISGSSLGS-IAISGLSSDQRVATLRSTDCTGHIICL 282
             +I+ H  P+  + L+    ++ + S  G+ I +        V   R       ++ +
Sbjct: 188 GVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDM 246

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 18/131 (13%), Positives = 36/131 (27%), Gaps = 24/131 (18%)

Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR 183
           L+  G  D   R++S    +  E    P              +     +   +       
Sbjct: 156 LLAAGSCDFKCRIFSAYIKEVEER---PAPTPWGSKMPFGELMFESSSSCGWVH------ 206

Query: 184 SV-FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS 242
            V F S  G+ +                 D T  + D   +     +     P+ +++  
Sbjct: 207 GVCF-SANGSRV------------AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFI 253

Query: 243 -EDQLIISGSS 252
            E  L+ +G  
Sbjct: 254 TESSLVAAGHD 264

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 7e-04
 Identities = 35/253 (13%), Positives = 74/253 (29%), Gaps = 52/253 (20%)

Query: 14  KKRSSKPRATIESLNGDIICMIFSSLGFFD---LVRCSAVCKSWNAIINRCKLLQLLYCK 70
            K ++   +++  L       +F  L  F     +    +   W  +I     + ++  K
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD--VMVVVNK 410

Query: 71  LHGFS----NTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLIL 126
           LH +S        S++ +    L +K             +++  H   VD   + +    
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKL---------ENEYALHRSIVDHYNIPKTFDS 461

Query: 127 TGVGDKVMRLWSLEGYKC------------VEEYSLPNAASLVDFDFDESKIVGLIGTRI 174
             +         L+ Y               E  +L     L DF F E KI        
Sbjct: 462 DDLIPP-----YLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRFLEQKI-------- 507

Query: 175 CIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDM--YSRKCSQ-IIRM 231
              R +             ++ L  +++ P            V  +  +  K  + +I  
Sbjct: 508 ---RHDSTAWNASGSILNTLQQL--KFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562

Query: 232 HCAPVTSLSLSED 244
               +  ++L  +
Sbjct: 563 KYTDLLRIALMAE 575

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 29/160 (18%), Positives = 62/160 (38%), Gaps = 34/160 (21%)

Query: 135 RLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIW--------------RR 179
           R ++    + ++   + +   L   D+    +V   +   + +W                
Sbjct: 75  RRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDES 134

Query: 180 NGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSL 239
             + SV  S +G+F+             VG  +G   ++D+ S+   + +  H A V  L
Sbjct: 135 TYVASVKWSHDGSFL------------SVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL 182

Query: 240 SLSEDQLIISGSSLGSIAISGL-SSDQRVATLRSTDCTGH 278
           S +   ++ SGS  G+I    +  ++ ++ TL+     GH
Sbjct: 183 SWN-RHVLSSGSRSGAIHHHDVRIANHQIGTLQ-----GH 216

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 39.7 bits (94), Expect = 7e-04
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267
              D   +++  Y  K  + I  H   ++ ++ S D  L++S S   ++ I  +SS + +
Sbjct: 41  SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL 100

Query: 268 ATLRSTDCTGH 278
            TL+     GH
Sbjct: 101 KTLK-----GH 106

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 39.4 bits (93), Expect = 9e-04
 Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS 251
           G ED    ++++ +++  Q ++ H   V S +      +I S +
Sbjct: 255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 18/141 (12%)

Query: 130 GDKVMRLWSLEGYKCVEEYSL-PNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVF 186
             +   + SL+ YK     S      + +++       V  G  G  I +W  +      
Sbjct: 51  CLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ---- 106

Query: 187 PSREGTFMKG-----LCMRY--FDPEAVV-GCEDGTARVFDMYSRKCSQIIRM--HCAPV 236
                    G       M++  F+   +      G   + D          +        
Sbjct: 107 NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWY 166

Query: 237 TSLSLSED-QLIISGSSLGSI 256
             + +S   Q++ +G S G +
Sbjct: 167 CCVDVSVSRQMLATGDSTGRL 187

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	299
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.98
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.98
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.96
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.96
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.96
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.96
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.96
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.96
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.96
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.96
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.95
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.95
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.95
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.95
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.95
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.95
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.95
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.95
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.95
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.95
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.95
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.95
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.95
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.95
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.95
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.94
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.94
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.94
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.94
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.94
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.94
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.94
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.94
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
3jro_A	753	Fusion protein of protein transport protein SEC13	99.93
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.93
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.93
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.93
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.93
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.92
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.92
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.92
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.92
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.91
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.91
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.9
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.89
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.89
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.87
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.87
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.82
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.81
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.79
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.78
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.76
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.75
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.74
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.73
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.73
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.73
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.72
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.72
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.72
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.71
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.71
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.71
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.7
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.7
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.69
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.67
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.67
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.66
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.66
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.65
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.65
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.64
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.62
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.62
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.6
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.6
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.58
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.55
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.53
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.51
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.5
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.49
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.49
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.48
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.48
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.46
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.44
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.43
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.43
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.41
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.4
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.4
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.39
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.39
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.38
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.38
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.35
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.33
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.33
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.32
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.3
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.29
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.28
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.26
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.25
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.24
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.24
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.24
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.24
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.23
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.23
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.2
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.2
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.2
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.18
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.16
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.15
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.13
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.13
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.1
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.09
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.08
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.04
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.03
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.02
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.0
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.96
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.93
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.93
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.91
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.88
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.88
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.86
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.84
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.84
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.83
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.8
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.79
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.78
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.75
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.75
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.75
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.74
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.74
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.74
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.71
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.7
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.65
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.64
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.6
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.6
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.58
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.57
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.53
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.52
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.46
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.41
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.39
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.32
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.3
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.28
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.26
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.24
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.24
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.21
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.19
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.11
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.09
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.08
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.08
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.05
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.03
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.03
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.02
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.01
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.98
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.97
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.96
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.96
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.94
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.91
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.85
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.82
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.8
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.78
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.78
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.65
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.6
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.59
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	97.56
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.53
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.52
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.48
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.41
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.36
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.35
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.24
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.17
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.15
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.15
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.15
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.09
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.03
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.83
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.7
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.66
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.65
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.63
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.6
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.6
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.51
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.37
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.35
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.28
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.25
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.22
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.13
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.99
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.93
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.9
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.86
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.83
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.75
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.72
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.67
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.66
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	95.64
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.64
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.59
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.54
3ott_A	758	Two-component system sensor histidine kinase; beta	95.3
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.23
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.11
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.03
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.99
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.9
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.83
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.76
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.75
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	94.65
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.56
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.53
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.24
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.15
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.07
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.45
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	92.93
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.81
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	92.78
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.74
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.7
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	92.56
3ott_A	758	Two-component system sensor histidine kinase; beta	92.55
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.64
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	91.45
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.07
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	89.69
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	87.64
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	87.41
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	84.53
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	83.94
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	83.06
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	81.95
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	80.67

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.7e-37  Score=263.44  Aligned_cols=247  Identities=15%  Similarity=0.164  Sum_probs=213.3

Q ss_pred             CcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceee
Q 022303           20 PRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALE   99 (299)
Q Consensus        20 ~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~   99 (299)
                      .+.++++|+.+....+..+.+|.+.|.+++|+|+++++++                ...|+++++|.  +.         
T Consensus       128 ~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~s----------------gs~D~~i~iwd--~~---------  180 (410)
T 1vyh_C          128 EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS----------------CSADMTIKLWD--FQ---------  180 (410)
T ss_dssp             SSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEE----------------EETTSCCCEEE--TT---------
T ss_pred             CCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEE----------------EeCCCeEEEEe--CC---------
Confidence            5678999999988878888899999999999999999887                33678888883  22         


Q ss_pred             cCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEE
Q 022303          100 EGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRIC  175 (299)
Q Consensus       100 ~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~  175 (299)
                       +...++++.+|...|.++.| +++ +|++|+.|++|++||+.+++++..+..|...+. +.+++++.+++ ++.|+.|+
T Consensus       181 -~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~  259 (410)
T 1vyh_C          181 -GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  259 (410)
T ss_dssp             -SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             -CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence             12235667899999999999 565 999999999999999999999999998876555 99999999999 99999999


Q ss_pred             EEecCCce--eeeeccCCccceeeeeccC--------------------CCeEEEecCCCcEEEEEcCCcceeeeccccC
Q 022303          176 IWRRNGLR--SVFPSREGTFMKGLCMRYF--------------------DPEAVVGCEDGTARVFDMYSRKCSQIIRMHC  233 (299)
Q Consensus       176 v~d~~~~~--~~~~~~~~~~~~~~~~~~~--------------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  233 (299)
                      +||+.+..  ..+..+...+. .++++|.                    ++.+++|+.|+.|++||+++++++..+.+|.
T Consensus       260 vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~  338 (410)
T 1vyh_C          260 VWVVATKECKAELREHRHVVE-CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD  338 (410)
T ss_dssp             EEETTTCCEEEEECCCSSCEE-EEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             EEECCCCceeeEecCCCceEE-EEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCC
Confidence            99998775  33444544433 4566664                    4569999999999999999999999999999


Q ss_pred             CceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          234 APVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       234 ~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ..|.+++|+|+ ++|++|+.|+.|++||+++++++.++..|..  .|++++|+|++.+|++||.-
T Consensus       339 ~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~sgs~D  401 (410)
T 1vyh_C          339 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTAPYVVTGSVD  401 (410)
T ss_dssp             SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSSSSCEEEEETT
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCCCCEEEEEeCC
Confidence            99999999999 9999999999999999999999999999988  89999999999999999864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2e-36  Score=248.84  Aligned_cols=256  Identities=17%  Similarity=0.163  Sum_probs=209.8

Q ss_pred             CCCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhh
Q 022303           11 PPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELA   90 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~   90 (299)
                      +.+....+..+.++++|+.+....+..+..|...|.+++|+++++++++                ...|+.+++|..  .
T Consensus        24 ~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s----------------~s~d~~i~vwd~--~   85 (304)
T 2ynn_A           24 TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV----------------GSDDFRIRVFNY--N   85 (304)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEE----------------EETTSEEEEEET--T
T ss_pred             CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEE----------------ECCCCEEEEEEC--C
Confidence            3444556667889999999988888888899999999999999999987                336788888832  2


Q ss_pred             hccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCc-eeEEEecCCCcee-EEEEec-CCCE
Q 022303           91 MKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY-KCVEEYSLPNAAS-LVDFDF-DESK  165 (299)
Q Consensus        91 ~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~-~~~~~~-~~~~  165 (299)
                      ..          ..+..+++|.+.|.++.| |++ +|++|+.|++|++||+.++ .....+..|...+ +++|+| ++..
T Consensus        86 ~~----------~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~  155 (304)
T 2ynn_A           86 TG----------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST  155 (304)
T ss_dssp             TC----------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE
T ss_pred             CC----------cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE
Confidence            22          234567899999999999 666 9999999999999999887 5566777776554 599999 5678


Q ss_pred             EE-EEcCCeEEEEecCCceeeeeccCC--ccceeeeecc--CCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEE
Q 022303          166 IV-GLIGTRICIWRRNGLRSVFPSREG--TFMKGLCMRY--FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS  240 (299)
Q Consensus       166 l~-~~~d~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~  240 (299)
                      ++ ++.|+.|++||+++.........+  .....+++.+  +++++++|+.|+.|++||+++++++..+.+|...|.+++
T Consensus       156 l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~  235 (304)
T 2ynn_A          156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV  235 (304)
T ss_dssp             EEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEE
Confidence            88 999999999999876533322221  2222445655  556799999999999999999999999999999999999


Q ss_pred             eCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCC--eEEeeec
Q 022303          241 LSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLH--MLFFLCF  296 (299)
Q Consensus       241 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~s~s~  296 (299)
                      |+|+ .+|++|+.||+|++||++++++++++..+..  .+.+++|+|++.  ++++|+.
T Consensus       236 ~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~asg~~  292 (304)
T 2ynn_A          236 FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGFD  292 (304)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS--SEEEEEECTTCGGGCEEEEET
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc--cEEEEEECCCCCceEEEEecC
Confidence            9999 9999999999999999999999999998887  899999999875  5777764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=8.2e-36  Score=248.97  Aligned_cols=259  Identities=15%  Similarity=0.135  Sum_probs=214.9

Q ss_pred             CCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhc
Q 022303           13 PKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMK   92 (299)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (299)
                      +....++.+.++++|+......+..+..|...|.+++|+|+++++++                ...|+.+++|..  ...
T Consensus        68 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s----------------~~~d~~v~iw~~--~~~  129 (340)
T 1got_B           68 RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC----------------GGLDNICSIYNL--KTR  129 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEE----------------EETTCEEEEEET--TTC
T ss_pred             CEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEE----------------EeCCCeEEEEEC--ccC
Confidence            34445557788999998887777777889999999999999999987                235677777732  221


Q ss_pred             cccceeecCceeeEEeeccccCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-EE
Q 022303           93 HHRFALEEGRIDIDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GL  169 (299)
Q Consensus        93 ~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~  169 (299)
                      ..      .......+.+|.+.|.++.| +++.+++++.|++|++||+.+++++..+..|...+ .++|+|++++++ ++
T Consensus       130 ~~------~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~  203 (340)
T 1got_B          130 EG------NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             SB------SCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CC------cceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEe
Confidence            11      11224567899999999999 56699999999999999999999999999886555 599999999998 99


Q ss_pred             cCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc--ccCCceeEEEeCCC-
Q 022303          170 IGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED-  244 (299)
Q Consensus       170 ~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~-  244 (299)
                      .|+.|++||+++..  ..+..+...+. .++++|++..+++|+.|+.|++||+++++.+..+.  .+...|.+++|+|+ 
T Consensus       204 ~d~~v~~wd~~~~~~~~~~~~h~~~v~-~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g  282 (340)
T 1got_B          204 CDASAKLWDVREGMCRQTFTGHESDIN-AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG  282 (340)
T ss_dssp             TTSCEEEEETTTCSEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred             CCCcEEEEECCCCeeEEEEcCCcCCEE-EEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC
Confidence            99999999998775  34555655544 56899999999999999999999999888776664  23357999999999 


Q ss_pred             CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          245 QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       245 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      ++|++|+.|+.|++||+.+++.+..+.+|..  +|.+++|+|+|++|++||.-+
T Consensus       283 ~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~D~  334 (340)
T 1got_B          283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEETTS
T ss_pred             CEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcCCc
Confidence            9999999999999999999999999999988  999999999999999998643

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.2e-36  Score=248.16  Aligned_cols=255  Identities=13%  Similarity=0.075  Sum_probs=215.7

Q ss_pred             CCCCCCCCCcchhccCcHHHHH--HHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhh
Q 022303           12 PPKKRSSKPRATIESLNGDIIC--MIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEEL   89 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~   89 (299)
                      +.....+..+.++++|+.+...  ....+.+|...|.++++++++..+++                ...|.++++|  ++
T Consensus        48 ~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s----------------~s~D~~i~lW--d~  109 (321)
T 3ow8_A           48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAAS----------------SSLDAHIRLW--DL  109 (321)
T ss_dssp             -CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEE----------------EETTSEEEEE--ET
T ss_pred             CCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEE----------------EeCCCcEEEE--EC
Confidence            3445667788999999976543  23356799999999999999988886                3367888888  32


Q ss_pred             hhccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCCCEE
Q 022303           90 AMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKI  166 (299)
Q Consensus        90 ~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l  166 (299)
                      ..          ...+..+..|...+.++.| |++ +|++|+.||.|++||+.+++....+..+...+ .++|+|++++|
T Consensus       110 ~~----------~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  179 (321)
T 3ow8_A          110 EN----------GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL  179 (321)
T ss_dssp             TT----------TEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred             CC----------CCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEE
Confidence            22          2234556789999999999 666 99999999999999999999988888776544 59999999999


Q ss_pred             E-EEcCCeEEEEecCCcee--eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCC
Q 022303          167 V-GLIGTRICIWRRNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE  243 (299)
Q Consensus       167 ~-~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~  243 (299)
                      + ++.|+.|++||+++++.  .+..+...+. .++|+|+++.|++|+.|+.|++||+++++....+.+|...|.+++|+|
T Consensus       180 asg~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp  258 (321)
T 3ow8_A          180 ASGAIDGIINIFDIATGKLLHTLEGHAMPIR-SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP  258 (321)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCCC-EEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEcccCCcee-EEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC
Confidence            9 99999999999998763  3445555444 568999999999999999999999999999999999999999999999


Q ss_pred             C-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          244 D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       244 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      + .+|++++.|++|++||+++++++.++..|..  .|.+++|+|+|++|++++.-
T Consensus       259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~~~d  311 (321)
T 3ow8_A          259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSVGDD  311 (321)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETT
T ss_pred             CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEEEeCC
Confidence            9 9999999999999999999999999999988  99999999999999999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.8e-34  Score=242.17  Aligned_cols=256  Identities=16%  Similarity=0.192  Sum_probs=201.8

Q ss_pred             hhccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCcee------
Q 022303           36 FSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRID------  104 (299)
Q Consensus        36 ~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~------  104 (299)
                      ..+.+|.+.|.|++|+|+++.|++     ++++|+....+.....  ...  ..++..+.++|++..++.+..+      
T Consensus        58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~--~~~--~~~v~~~~~sp~g~~lasg~~d~~i~v~  133 (354)
T 2pbi_B           58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV--TMP--CTWVMACAYAPSGCAIACGGLDNKCSVY  133 (354)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECS--SSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred             EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE--ecC--CCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence            356699999999999999999998     4667754221111000  000  1123355667777666655432      


Q ss_pred             -------------eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEec--CCCEE
Q 022303          105 -------------IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDF--DESKI  166 (299)
Q Consensus       105 -------------~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~--~~~~l  166 (299)
                                   ...+.+|.+.|.++.| +++ .|++++.|++|++||+++++++..+..|...+ .++++|  +++.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l  213 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF  213 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence                         3455689999999999 555 99999999999999999999999999886555 488877  46788


Q ss_pred             E-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc--cCCceeEEEe
Q 022303          167 V-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM--HCAPVTSLSL  241 (299)
Q Consensus       167 ~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~i~~~~~  241 (299)
                      + ++.|+.|++||+++++  ..+..|...+. .++++|++..+++++.|+.|++||+++++.+..+..  +...+.+++|
T Consensus       214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~-~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~  292 (354)
T 2pbi_B          214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVN-SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF  292 (354)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCCCCCeE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence            8 9999999999999875  34455555544 468899999999999999999999998877666643  3346899999


Q ss_pred             CCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          242 SED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       242 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      +|+ .+|++|+.|+.|++||+.+++.+..+.+|..  .|++++|+|+|++|++|+.-+
T Consensus       293 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs~D~  348 (354)
T 2pbi_B          293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGSWDH  348 (354)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEETTS
T ss_pred             eCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEcCCC
Confidence            999 9999999999999999999999999999988  999999999999999998643

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-34  Score=247.80  Aligned_cols=231  Identities=15%  Similarity=0.218  Sum_probs=198.8

Q ss_pred             hhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCe
Q 022303           36 FSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGV  115 (299)
Q Consensus        36 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i  115 (299)
                      ..+.+|.+.|++++|+|++..+++                ...|+++++|.  +....          ..+++++|.+.|
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s----------------~s~Dg~i~vwd--~~~~~----------~~~~l~~h~~~V  153 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVS----------------ASEDATIKVWD--YETGD----------FERTLKGHTDSV  153 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEE----------------EESSSCEEEEE--TTTCC----------CCEEECCCSSCE
T ss_pred             EeecccCCcEEEEEEcCCCCEEEE----------------EeCCCeEEEEE--CCCCc----------EEEEEeccCCcE
Confidence            345589999999999999998887                34678888883  23222          245668999999


Q ss_pred             eEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce--eeeecc
Q 022303          116 DQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSR  189 (299)
Q Consensus       116 ~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~  189 (299)
                      .++.| +++ +|++|+.|++|++||+.+++++..+..|...+. ++|+|++++++ ++.|+.|++||++++.  ..+..+
T Consensus       154 ~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h  233 (410)
T 1vyh_C          154 QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH  233 (410)
T ss_dssp             EEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC
Confidence            99999 555 999999999999999999999999998876555 99999999999 9999999999998875  344555


Q ss_pred             CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC---------------------CeEE
Q 022303          190 EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED---------------------QLII  248 (299)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~---------------------~~l~  248 (299)
                      ...+. .+++++++..+++|+.|+.|++||+++++....+..|...|.+++|+|+                     .+|+
T Consensus       234 ~~~v~-~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  312 (410)
T 1vyh_C          234 REWVR-MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL  312 (410)
T ss_dssp             SSCEE-EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE
T ss_pred             CccEE-EEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEE
Confidence            55443 4578888899999999999999999999999999999999999999984                     4799


Q ss_pred             EEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          249 SGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       249 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +|+.|+.|++||+++++++.++.+|..  .|++++|+|+|++|++|+.-
T Consensus       313 sgs~D~~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D  359 (410)
T 1vyh_C          313 SGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADD  359 (410)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETT
T ss_pred             EEeCCCeEEEEECCCCceEEEEECCCC--cEEEEEEcCCCCEEEEEeCC
Confidence            999999999999999999999999988  89999999999999999854

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.7e-34  Score=236.99  Aligned_cols=231  Identities=16%  Similarity=0.187  Sum_probs=193.8

Q ss_pred             hccCccchhhHHHhhhhH----HHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCce-eeEEeecc
Q 022303           37 SSLGFFDLVRCSAVCKSW----NAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRI-DIDQWKAH  111 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~~----~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~-~~~~~~~h  111 (299)
                      ...+|.+.|.+++|+++.    ..+++                ...|+++|+|..  .         .+.. ....+.+|
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~~l~t----------------gs~D~~v~vW~~--~---------~~~~~~~~~l~gh   79 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSETVVT----------------GSLDDLVKVWKW--R---------DERLDLQWSLEGH   79 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------CEEEE----------------EETTSCEEEEEE--E---------TTEEEEEEEECCC
T ss_pred             ecccCCCcEEEEEEecCCCCCCCEEEE----------------EcCCCCEEEEEC--C---------CCCeeeeeeeccC
Confidence            345899999999999864    45665                337888899933  1         1111 23457899


Q ss_pred             ccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCce-eEEEEecCCCEEE-EEcCCeEEEEecCCceee--
Q 022303          112 SVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESKIV-GLIGTRICIWRRNGLRSV--  185 (299)
Q Consensus       112 ~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~--  185 (299)
                      ...|.++.+ +++ ++++++.|++|++||+.+++.+..+..+... ..++|+|++++++ ++.++.|++||+++....  
T Consensus        80 ~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~  159 (321)
T 3ow8_A           80 QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS  159 (321)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE
Confidence            999999999 555 9999999999999999999999988876544 4599999999999 999999999999887543  


Q ss_pred             eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC
Q 022303          186 FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD  264 (299)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~  264 (299)
                      +..+... ...++++|++.++++|+.|+.|++||+++++.+..+..|..+|.+++|+|+ ++|++|+.|+.|++||++++
T Consensus       160 ~~~~~~~-v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~  238 (321)
T 3ow8_A          160 LDTRGKF-ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA  238 (321)
T ss_dssp             EECSSSC-EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred             ecCCCce-EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence            3333333 335689999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             ceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          265 QRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       265 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +++.++.+|..  .|.+++|+|++++|++|+.-
T Consensus       239 ~~~~~~~~h~~--~v~~~~~sp~~~~l~s~s~D  269 (321)
T 3ow8_A          239 NLAGTLSGHAS--WVLNVAFCPDDTHFVSSSSD  269 (321)
T ss_dssp             CEEEEECCCSS--CEEEEEECTTSSEEEEEETT
T ss_pred             ceeEEEcCCCC--ceEEEEECCCCCEEEEEeCC
Confidence            99999999988  89999999999999999864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.6e-34  Score=237.46  Aligned_cols=231  Identities=13%  Similarity=0.128  Sum_probs=193.1

Q ss_pred             hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCee
Q 022303           37 SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVD  116 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~  116 (299)
                      .+.+|.+.|.+++|+|+++++++                ...|+.+++|..  ..          ...++.+.+|..+|.
T Consensus         8 ~~~~h~~~V~~~~fsp~~~~l~s----------------~~~dg~v~lWd~--~~----------~~~~~~~~~~~~~v~   59 (304)
T 2ynn_A            8 TFSNRSDRVKGIDFHPTEPWVLT----------------TLYSGRVELWNY--ET----------QVEVRSIQVTETPVR   59 (304)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEE----------------EETTSEEEEEET--TT----------TEEEEEEECCSSCEE
T ss_pred             eecCCCCceEEEEECCCCCEEEE----------------EcCCCcEEEEEC--CC----------CceeEEeeccCCcEE
Confidence            45689999999999999999987                336788888832  22          223556789999999


Q ss_pred             EEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce---eeeecc
Q 022303          117 QCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR---SVFPSR  189 (299)
Q Consensus       117 ~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~---~~~~~~  189 (299)
                      ++.| +++ +|++|+.|++|++||+.+++++..+..|...+. ++|+|++++++ ++.|++|++||+++..   ..+..|
T Consensus        60 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h  139 (304)
T 2ynn_A           60 AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH  139 (304)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCC
T ss_pred             EEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhccc
Confidence            9999 555 999999999999999999999999998876554 99999999999 9999999999998763   334455


Q ss_pred             CCccceeeeeccC-CCeEEEecCCCcEEEEEcCCcceeeecc-ccCCceeEEEeCC--C-CeEEEEeCCCcEEEEeCCCC
Q 022303          190 EGTFMKGLCMRYF-DPEAVVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLSE--D-QLIISGSSLGSIAISGLSSD  264 (299)
Q Consensus       190 ~~~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~--~-~~l~~~~~dg~i~iwd~~~~  264 (299)
                      ...+. .++++|. +..+++|+.|+.|++||++++.....+. .|...+..+.++|  + .+|++|+.|++|++||++++
T Consensus       140 ~~~v~-~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~  218 (304)
T 2ynn_A          140 EHFVM-CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK  218 (304)
T ss_dssp             CSCEE-EEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT
T ss_pred             CCcEE-EEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC
Confidence            55443 4577774 5679999999999999998877665554 5567899999986  5 79999999999999999999


Q ss_pred             ceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          265 QRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       265 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      +++.++.+|..  .|.+++|+|++++|++|+.-+
T Consensus       219 ~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s~Dg  250 (304)
T 2ynn_A          219 SCVATLEGHMS--NVSFAVFHPTLPIIISGSEDG  250 (304)
T ss_dssp             EEEEEEECCSS--CEEEEEECSSSSEEEEEETTS
T ss_pred             ccceeeCCCCC--CEEEEEECCCCCEEEEEcCCC
Confidence            99999999988  999999999999999998643

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.2e-34  Score=238.12  Aligned_cols=230  Identities=17%  Similarity=0.135  Sum_probs=179.5

Q ss_pred             CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEE
Q 022303           40 GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCR  119 (299)
Q Consensus        40 ~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~  119 (299)
                      .|.+.|.+++|+++...+ +                ...|+++++|  ++........+      ...+.+|.+.|++++
T Consensus        80 ~~~~~v~~~~~s~d~~l~-~----------------~s~dg~v~lW--d~~~~~~~~~~------~~~~~~H~~~V~~v~  134 (344)
T 4gqb_B           80 QTEAGVADLTWVGERGIL-V----------------ASDSGAVELW--ELDENETLIVS------KFCKYEHDDIVSTVS  134 (344)
T ss_dssp             EESSCEEEEEEETTTEEE-E----------------EETTSEEEEE--EECTTSSCEEE------EEEEECCSSCEEEEE
T ss_pred             ccCCCEEEEEEeCCCeEE-E----------------EECCCEEEEE--eccCCCceeEe------eccccCCCCCEEEEE
Confidence            466779999999986544 3                2367888888  33322211111      223468999999999


Q ss_pred             e-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCC-EEE-EEcCCeEEEEecCCceeeeec---cCC
Q 022303          120 M-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDES-KIV-GLIGTRICIWRRNGLRSVFPS---REG  191 (299)
Q Consensus       120 ~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~l~-~~~d~~i~v~d~~~~~~~~~~---~~~  191 (299)
                      | +++ +|++|+.|++|++||+.+++++..+.+|...+. ++|++++. +++ ++.|+.|++||+++++.....   ..+
T Consensus       135 ~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~  214 (344)
T 4gqb_B          135 VLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPG  214 (344)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----C
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceee
Confidence            9 666 999999999999999999999999998876554 99999885 566 899999999999987533221   222


Q ss_pred             ccceeeeeccCCC-eEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCceEE
Q 022303          192 TFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVA  268 (299)
Q Consensus       192 ~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~  268 (299)
                      .....+++++.+. .+++|+.|+.|++||+++++.+..+.+|...|++++|+|+  ++|++|+.|++|+|||+++++++ 
T Consensus       215 ~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-  293 (344)
T 4gqb_B          215 YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-  293 (344)
T ss_dssp             CCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-
T ss_pred             ccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-
Confidence            2233567777654 5789999999999999999999999999999999999997  58999999999999999988765 


Q ss_pred             EeeccCCCCcEEEEEccCCCCe-EEeeecc
Q 022303          269 TLRSTDCTGHIICLMYPQFLHM-LFFLCFL  297 (299)
Q Consensus       269 ~~~~~~~~~~i~~~~~s~~g~~-l~s~s~~  297 (299)
                      .+.+|..  .|++++|+|+++. |++||.-
T Consensus       294 ~~~~H~~--~V~~v~~sp~~~~llas~s~D  321 (344)
T 4gqb_B          294 RSQAHRD--FVRDATWSPLNHSLLTTVGWD  321 (344)
T ss_dssp             EECCCSS--CEEEEEECSSSTTEEEEEETT
T ss_pred             EEcCCCC--CEEEEEEeCCCCeEEEEEcCC
Confidence            5678887  8999999999875 5677753

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.3e-33  Score=233.56  Aligned_cols=233  Identities=18%  Similarity=0.235  Sum_probs=192.3

Q ss_pred             hccCccchhhHHHhhhhH-HHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCe
Q 022303           37 SSLGFFDLVRCSAVCKSW-NAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGV  115 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~~-~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i  115 (299)
                      .+.+|.+.|.+++++++. +++++                ...|+++++|..  .....     .-...++.+++|...|
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s----------------~s~D~~v~~W~~--~~~~~-----~~~~~~~~~~~h~~~v   68 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLS----------------ASRDKTLISWKL--TGDDQ-----KFGVPVRSFKGHSHIV   68 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEE----------------EETTSEEEEEEE--EEETT-----EEEEEEEEEECCSSCE
T ss_pred             EEccccceEEEEEccCCCccEEEE----------------ecCCccEEEecC--CCCCc-----cccccceEEeCCcccE
Confidence            466999999999999865 67776                337788888832  21110     0123467789999999


Q ss_pred             eEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce-eeeeccC
Q 022303          116 DQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR-SVFPSRE  190 (299)
Q Consensus       116 ~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~-~~~~~~~  190 (299)
                      .++.| +++ +|++|+.|++|++||+.+++++..+..|...+. ++|+|++.+++ ++.|+.|++||++... ..+..+.
T Consensus        69 ~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~  148 (319)
T 3frx_A           69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHN  148 (319)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCS
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccC
Confidence            99999 566 999999999999999999999999998876554 99999999999 9999999999998654 3344454


Q ss_pred             CccceeeeeccCC------CeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 022303          191 GTFMKGLCMRYFD------PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS  263 (299)
Q Consensus       191 ~~~~~~~~~~~~~------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~  263 (299)
                      ..+. .+++.+..      ..+++++.|+.|++||+++++....+.+|...|.+++|+|+ ++|++|+.||.|++||+++
T Consensus       149 ~~v~-~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~  227 (319)
T 3frx_A          149 DWVS-QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA  227 (319)
T ss_dssp             SCEE-EEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             CcEE-EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            4433 34666643      36999999999999999999988889899999999999999 9999999999999999999


Q ss_pred             CceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          264 DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       264 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ++++.++..+.   +|.+++|+|++.+|++++.
T Consensus       228 ~~~~~~~~~~~---~v~~~~~sp~~~~la~~~~  257 (319)
T 3frx_A          228 KKAMYTLSAQD---EVFSLAFSPNRYWLAAATA  257 (319)
T ss_dssp             TEEEEEEECCS---CEEEEEECSSSSEEEEEET
T ss_pred             CcEEEEecCCC---cEEEEEEcCCCCEEEEEcC
Confidence            99999987654   7999999999999998864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.2e-34  Score=245.55  Aligned_cols=264  Identities=17%  Similarity=0.157  Sum_probs=210.7

Q ss_pred             CCCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhh
Q 022303           11 PPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELA   90 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~   90 (299)
                      +.+....+..+.++++|+......+..+..|...|.+++|+|+++++++                ...|..+++|.  +.
T Consensus        77 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las----------------~~~d~~v~iw~--~~  138 (380)
T 3iz6_a           77 EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC----------------GGLDSACSIFN--LS  138 (380)
T ss_dssp             TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEE----------------CCSSSCCEEEE--CC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEE----------------eeCCCcEEEEE--CC
Confidence            3445566677889999999888888888899999999999999999997                44677778883  22


Q ss_pred             hccccceeecCceeeEEeeccccCeeEEEe-cC-C-EEEEEeCCCcEEEEecCCceeEEEe-----cCCCc-eeEEEEec
Q 022303           91 MKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KR-G-LILTGVGDKVMRLWSLEGYKCVEEY-----SLPNA-ASLVDFDF  161 (299)
Q Consensus        91 ~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~-~~~~~~~~  161 (299)
                      .....   .......+.+.+|.+.|.++.| ++ + .|++|+.|++|++||+.+++.+..+     ..|.. +..+++++
T Consensus       139 ~~~~~---~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          139 SQADR---DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             CCSSC---CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred             CCccc---cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence            21110   0001113456899999999988 43 3 8999999999999999999988877     34544 44588876


Q ss_pred             -CCCEEE-EEcCCeEEEEecCCce---eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccC---
Q 022303          162 -DESKIV-GLIGTRICIWRRNGLR---SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC---  233 (299)
Q Consensus       162 -~~~~l~-~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---  233 (299)
                       ++++++ ++.|+.|++||++...   ..+..|.+.+. .++|+|++..+++|+.|+.|++||+++++.+..+..+.   
T Consensus       216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDIN-SVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN  294 (380)
T ss_dssp             SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCC-EEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred             CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeE-EEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence             778888 9999999999997432   44566666655 46899999999999999999999999998887765332   


Q ss_pred             ----CceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEe----eccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          234 ----APVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATL----RSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       234 ----~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                          ..|++++|+|+ ++|++|+.||.|++||+.+++.+..+    .+|..  .|++++|+|+|++|++||.-+
T Consensus       295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~sgs~D~  366 (380)
T 3iz6_a          295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG--RISCLGLSSDGSALCTGSWDK  366 (380)
T ss_dssp             CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC--CCCEEEECSSSSEEEEECTTS
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCC--ceEEEEECCCCCEEEEeeCCC
Confidence                34899999999 99999999999999999999988877    56666  899999999999999998643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.3e-32  Score=234.98  Aligned_cols=274  Identities=22%  Similarity=0.261  Sum_probs=214.9

Q ss_pred             CcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhh-hhHHHHHHhhhc-CCCC----------------CCCch
Q 022303           20 PRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINR-CKLLQLLYCKLH-GFSN----------------TSGSS   81 (299)
Q Consensus        20 ~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~-~~~w~~~~~~~~-~~~~----------------~~d~~   81 (299)
                      ..+.+..||.|+..+|+++|++.++++|..+|+.|+.++.+ ..+|+.++.+.. ....                .....
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDR   90 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCTTSCHHHH
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhccCCCcccchh
Confidence            34678899999999999999999999999999999999987 899999885443 1100                00111


Q ss_pred             hhh-----------hhhhh-----------------hhccccceeecCce-------------eeEEeeccccCeeEEEe
Q 022303           82 MRL-----------HLEEL-----------------AMKHHRFALEEGRI-------------DIDQWKAHSVGVDQCRM  120 (299)
Q Consensus        82 ~~~-----------~~~~~-----------------~~~~~~~~l~~g~~-------------~~~~~~~h~~~i~~~~~  120 (299)
                      ++.           |...-                 ....++..++.|..             .+..+.+|.+.|.++.|
T Consensus        91 ~~~~~~~~~~~~~~w~~~~~~~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~  170 (464)
T 3v7d_B           91 LRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY  170 (464)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCCCEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             hHHHHHHhhhhHhhhcCCCcCcceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEE
Confidence            111           10000                 00111122232222             14566799999999999


Q ss_pred             -cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEe--cCCCEEE-EEcCCeEEEEecCCceee----------
Q 022303          121 -KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFD--FDESKIV-GLIGTRICIWRRNGLRSV----------  185 (299)
Q Consensus       121 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~--~~~~~l~-~~~d~~i~v~d~~~~~~~----------  185 (299)
                       ++++|++|+.||+|++||+.+++++..+..|...+. ++|+  +++..++ ++.|+.|++||+++....          
T Consensus       171 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~  250 (464)
T 3v7d_B          171 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP  250 (464)
T ss_dssp             CSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSS
T ss_pred             cCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcc
Confidence             455999999999999999999999999997765554 8887  5667788 999999999999875421          


Q ss_pred             ------------eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC
Q 022303          186 ------------FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS  252 (299)
Q Consensus       186 ------------~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~  252 (299)
                                  .....++...+.++.+++..+++++.|+.|++||+++++.+..+..|...|.+++|+|+ +++++|+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~  330 (464)
T 3v7d_B          251 LVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM  330 (464)
T ss_dssp             EEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred             eEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeC
Confidence                        12223344446678888999999999999999999999999999999999999999999 99999999


Q ss_pred             CCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          253 LGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       253 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ||.|++||+++++++.++..|..  .|.+++|+  +.+|++|+.-
T Consensus       331 dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~--~~~l~s~s~d  371 (464)
T 3v7d_B          331 DTTIRIWDLENGELMYTLQGHTA--LVGLLRLS--DKFLVSAAAD  371 (464)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSS--CEEEEEEC--SSEEEEEETT
T ss_pred             CCcEEEEECCCCcEEEEEeCCCC--cEEEEEEc--CCEEEEEeCC
Confidence            99999999999999999999988  89999997  5789998754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=9.1e-34  Score=238.08  Aligned_cols=247  Identities=13%  Similarity=0.080  Sum_probs=189.1

Q ss_pred             chhccCcHHHHHHHhh----ccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccce
Q 022303           22 ATIESLNGDIICMIFS----SLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFA   97 (299)
Q Consensus        22 ~~~~~~~~~~~~~i~~----~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (299)
                      ..+..|+.........    ..+|.+.|.+++|+|++.+++.                 ..|+++++|  ++........
T Consensus        70 ~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~-----------------s~dg~v~lW--d~~~~~~~~~  130 (357)
T 4g56_B           70 GSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVA-----------------SDSGAVELW--EILEKESLLV  130 (357)
T ss_dssp             EEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEE-----------------ETTSCEEEC----------CC
T ss_pred             CeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEE-----------------ECCCEEEEe--eccccceeEE
Confidence            3455666555543333    3468899999999999877664                 256777888  3332221111


Q ss_pred             eecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCC-EEE-EEcCC
Q 022303           98 LEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDES-KIV-GLIGT  172 (299)
Q Consensus        98 l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~l~-~~~d~  172 (299)
                      .      .....+|.+.|++++| +++ +|++|+.|++|++||+.+++++..+..|...+. ++|++++. .++ ++.|+
T Consensus       131 ~------~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg  204 (357)
T 4g56_B          131 N------KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG  204 (357)
T ss_dssp             C------CEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTS
T ss_pred             E------eeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCC
Confidence            0      1223589999999999 666 999999999999999999999999998876555 99999875 566 89999


Q ss_pred             eEEEEecCCceeeee----ccCCccceeeeeccCCC-eEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC--C
Q 022303          173 RICIWRRNGLRSVFP----SREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--Q  245 (299)
Q Consensus       173 ~i~v~d~~~~~~~~~----~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~--~  245 (299)
                      .|++||+++++....    .+... ...++++|++. .+++|+.|+.|++||+++++.+..+..|...|++++|+|+  +
T Consensus       205 ~v~~wd~~~~~~~~~~~~~~~~~~-v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~  283 (357)
T 4g56_B          205 RILLWDTRKPKPATRIDFCASDTI-PTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSP  283 (357)
T ss_dssp             CEEECCTTSSSCBCBCCCTTCCSC-EEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSC
T ss_pred             ceEEEECCCCceeeeeeecccccc-ccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCC
Confidence            999999988753321    12222 23457887755 5888999999999999999999999999999999999987  6


Q ss_pred             eEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccC-CCCeEEeeecc
Q 022303          246 LIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQ-FLHMLFFLCFL  297 (299)
Q Consensus       246 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~s~s~~  297 (299)
                      +|++|+.|++|+|||+++++++..+ +|..  .|++++|+| ++++|++||.-
T Consensus       284 ~lasgs~D~~i~iwd~~~~~~~~~~-~H~~--~V~~vafsP~d~~~l~s~s~D  333 (357)
T 4g56_B          284 FLASISEDCTVAVLDADFSEVFRDL-SHRD--FVTGVAWSPLDHSKFTTVGWD  333 (357)
T ss_dssp             CEEEEETTSCEEEECTTSCEEEEEC-CCSS--CEEEEEECSSSTTEEEEEETT
T ss_pred             EEEEEeCCCEEEEEECCCCcEeEEC-CCCC--CEEEEEEeCCCCCEEEEEcCC
Confidence            8999999999999999999887765 6776  899999998 79999999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.5e-32  Score=229.16  Aligned_cols=233  Identities=14%  Similarity=0.163  Sum_probs=192.8

Q ss_pred             hhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCe
Q 022303           36 FSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGV  115 (299)
Q Consensus        36 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i  115 (299)
                      ..+.+|.+.|.+++|+|+++++++                ...|+.+++|..  ..          ...+..+..|...|
T Consensus        49 ~~l~gH~~~v~~~~~s~d~~~l~s----------------~s~Dg~v~iWd~--~~----------~~~~~~~~~~~~~v  100 (340)
T 1got_B           49 RTLRGHLAKIYAMHWGTDSRLLLS----------------ASQDGKLIIWDS--YT----------TNKVHAIPLRSSWV  100 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEE----------------EETTTEEEEEET--TT----------CCEEEEEECSSSCE
T ss_pred             eeecCCCCceEEEEECCCCCEEEE----------------EeCCCcEEEEEC--CC----------CCcceEeecCCccE
Confidence            456789999999999999999987                346788888832  21          12345568899999


Q ss_pred             eEEEe-cCC-EEEEEeCCCcEEEEecCCc----eeEEEecCCCceeE-EEEecCCCEEEEEcCCeEEEEecCCce--eee
Q 022303          116 DQCRM-KRG-LILTGVGDKVMRLWSLEGY----KCVEEYSLPNAASL-VDFDFDESKIVGLIGTRICIWRRNGLR--SVF  186 (299)
Q Consensus       116 ~~~~~-~~~-~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~-~~~~~~~~~l~~~~d~~i~v~d~~~~~--~~~  186 (299)
                      .++.| +++ +|++|+.|+.+++|++.+.    +....+..|...+. +.|++++.++.++.|+.|++||++++.  ..+
T Consensus       101 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~  180 (340)
T 1got_B          101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF  180 (340)
T ss_dssp             EEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEE
Confidence            99999 666 9999999999999999865    35566777766555 889988875559999999999999875  344


Q ss_pred             eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc
Q 022303          187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ  265 (299)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~  265 (299)
                      ..|.+.+. .+++++++..+++|+.|+.|++||+++++.+..+..|...|.+++|+|+ ++|++|+.||+|++||+++++
T Consensus       181 ~~h~~~v~-~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~  259 (340)
T 1got_B          181 TGHTGDVM-SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ  259 (340)
T ss_dssp             CCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             cCCCCceE-EEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Confidence            55555544 5688999999999999999999999999999999999999999999999 999999999999999999998


Q ss_pred             eEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          266 RVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       266 ~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      .+..+..+.....|.+++|+|+|++|++|+..
T Consensus       260 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d  291 (340)
T 1got_B          260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDD  291 (340)
T ss_dssp             EEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEccCCcccceEEEEECCCCCEEEEECCC
Confidence            88777644322379999999999999999853

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=9.6e-33  Score=226.10  Aligned_cols=232  Identities=10%  Similarity=0.040  Sum_probs=181.7

Q ss_pred             hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCee
Q 022303           37 SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVD  116 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~  116 (299)
                      .+.+|.+.|++++|++++++|++                ...|+++++|..  ...        ....+.++.+|.++|+
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las----------------~s~D~~v~iw~~--~~~--------~~~~~~~l~gH~~~V~   57 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMAT----------------CSSDKTIKIFEV--EGE--------THKLIDTLTGHEGPVW   57 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEE----------------EETTSCEEEEEB--CSS--------CBCCCEEECCCSSCEE
T ss_pred             eccCCcCceEEEEECCCCCEEEE----------------EeCCCEEEEEec--CCC--------CcEEEEEEccccCCeE
Confidence            45689999999999999999997                336788888832  110        1123567799999999


Q ss_pred             EEEe-cC--C-EEEEEeCCCcEEEEecCCce--eEEEecCCCce-eEEEEecC--CCEEE-EEcCCeEEEEecCCce---
Q 022303          117 QCRM-KR--G-LILTGVGDKVMRLWSLEGYK--CVEEYSLPNAA-SLVDFDFD--ESKIV-GLIGTRICIWRRNGLR---  183 (299)
Q Consensus       117 ~~~~-~~--~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~-~~~~~~~~--~~~l~-~~~d~~i~v~d~~~~~---  183 (299)
                      ++.| ++  + +|++|+.|++|++||+.+++  .+..+..|... ..++|+|+  +.+|+ ++.|+.|++||+++..   
T Consensus        58 ~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~  137 (297)
T 2pm7_B           58 RVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS  137 (297)
T ss_dssp             EEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC
T ss_pred             EEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee
Confidence            9999 32  4 99999999999999999874  55666666554 45999997  78888 9999999999998652   


Q ss_pred             -eeeeccCCccceeeeeccC-------------CCeEEEecCCCcEEEEEcCCcc----eeeeccccCCceeEEEeCCC-
Q 022303          184 -SVFPSREGTFMKGLCMRYF-------------DPEAVVGCEDGTARVFDMYSRK----CSQIIRMHCAPVTSLSLSED-  244 (299)
Q Consensus       184 -~~~~~~~~~~~~~~~~~~~-------------~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~-  244 (299)
                       ..+..|...+. .++|+|.             +..|++|+.|+.|++||+++++    ....+.+|...|.+++|+|+ 
T Consensus       138 ~~~~~~h~~~v~-~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~  216 (297)
T 2pm7_B          138 PIIIDAHAIGVN-SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV  216 (297)
T ss_dssp             CEEEECCSSCEE-EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred             eeeeecccCccc-eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCC
Confidence             33445554443 3577775             3579999999999999998765    55677899999999999996 


Q ss_pred             ---CeEEEEeCCCcEEEEeCCCCc---eEEEe--eccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          245 ---QLIISGSSLGSIAISGLSSDQ---RVATL--RSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       245 ---~~l~~~~~dg~i~iwd~~~~~---~~~~~--~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                         .+|++++.|++|++||+++.+   ....+  ..+..  .|.+++|+|+|++|++++..
T Consensus       217 ~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~g~~las~~~D  275 (297)
T 2pm7_B          217 LLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD--VLWRASWSLSGNVLALSGGD  275 (297)
T ss_dssp             SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS--CEEEEEECSSSCCEEEEETT
T ss_pred             CCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC--cEEEEEECCCCCEEEEEcCC
Confidence               589999999999999998643   12233  33444  89999999999999999864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2e-33  Score=231.61  Aligned_cols=254  Identities=17%  Similarity=0.166  Sum_probs=207.2

Q ss_pred             CCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhc
Q 022303           13 PKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMK   92 (299)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (299)
                      +....+..+..+++|+......+..+.+|...|.+++|+|+++++++                ...|+.+++|  ++...
T Consensus        36 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s----------------~~~d~~i~vw--d~~~~   97 (312)
T 4ery_A           36 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS----------------ASDDKTLKIW--DVSSG   97 (312)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE----------------EETTSEEEEE--ETTTC
T ss_pred             CEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEE----------------ECCCCEEEEE--ECCCC
Confidence            34445556788999998777666677799999999999999999886                2356778888  32221


Q ss_pred             cccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-E
Q 022303           93 HHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-G  168 (299)
Q Consensus        93 ~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~  168 (299)
                                ..+..+++|...|.++.| +++ +|++|+.|+.|++||+.+++++..+..|...+ .++|+|++++++ +
T Consensus        98 ----------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
T 4ery_A           98 ----------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS  167 (312)
T ss_dssp             ----------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ----------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence                      234566899999999999 555 99999999999999999999999998876555 499999999998 9


Q ss_pred             EcCCeEEEEecCCceeeee--ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeE--EEeC-C
Q 022303          169 LIGTRICIWRRNGLRSVFP--SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTS--LSLS-E  243 (299)
Q Consensus       169 ~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~--~~~~-~  243 (299)
                      +.|+.|++||+++.+....  .........+++++++.++++++.|+.|++||+++++.+..+..|...+.+  ..++ +
T Consensus       168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (312)
T 4ery_A          168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT  247 (312)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred             eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence            9999999999998753322  222223335689999999999999999999999999998888777654332  2333 4


Q ss_pred             C-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          244 D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       244 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      + .+|++|+.||.|++||+++++.+..+.+|..  .|.+++|+|++.+|++++.
T Consensus       248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~  299 (312)
T 4ery_A          248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAAL  299 (312)
T ss_dssp             SSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEEC
T ss_pred             CCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEc
Confidence            5 8999999999999999999999999999988  8999999999999999873

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=229.96  Aligned_cols=238  Identities=14%  Similarity=0.082  Sum_probs=178.1

Q ss_pred             cCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEE
Q 022303           39 LGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQC  118 (299)
Q Consensus        39 ~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~  118 (299)
                      ..|...|.+++|+|+|+.|++.                 ++.+.|+|...+..-..... ............|...|.++
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~-----------------sd~~~r~Wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~   88 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGA-----------------SSLSGRCWAGSLWLFKDPCA-APNEGFCSAGVQTEAGVADL   88 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEE-----------------ECCSSSCCCEEEEEESSGGG-TTCGGGCSEEEEESSCEEEE
T ss_pred             ccccCCEEEEEECCCCCEEEEE-----------------eCCceEEeeceeeeeccccc-cCCcceeeeeeccCCCEEEE
Confidence            3567779999999999998861                 34455665321100000000 00000011224577889999


Q ss_pred             Ee-cCCEEEEEeCCCcEEEEecCCceeEEEe----cCCCc-eeEEEEecCCCEEE-EEcCCeEEEEecCCce--eeeecc
Q 022303          119 RM-KRGLILTGVGDKVMRLWSLEGYKCVEEY----SLPNA-ASLVDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSR  189 (299)
Q Consensus       119 ~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~-~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~  189 (299)
                      +| +++.|++|+.||+|++||+.+++.+...    .+|.. +.+++|+|++++|+ ++.|+.|++||+++++  ..+..|
T Consensus        89 ~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  168 (344)
T 4gqb_B           89 TWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH  168 (344)
T ss_dssp             EEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc
Confidence            99 6669999999999999999988765433    35654 44599999999999 9999999999999876  345556


Q ss_pred             CCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeecc--ccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCC
Q 022303          190 EGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSD  264 (299)
Q Consensus       190 ~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~  264 (299)
                      .+.+. .+++++++.. +++++.|+.|++||+++++....+.  .+...+.+++|+|+  ++|++|+.||.|++||++++
T Consensus       169 ~~~V~-~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~  247 (344)
T 4gqb_B          169 AAQVT-CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST  247 (344)
T ss_dssp             SSCEE-EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred             CCceE-EEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC
Confidence            65544 4578888764 7899999999999999998887764  45567999999985  78999999999999999999


Q ss_pred             ceEEEeeccCCCCcEEEEEccCCC-CeEEeeecc
Q 022303          265 QRVATLRSTDCTGHIICLMYPQFL-HMLFFLCFL  297 (299)
Q Consensus       265 ~~~~~~~~~~~~~~i~~~~~s~~g-~~l~s~s~~  297 (299)
                      +++.++.+|..  .|++++|+|+| ++|++||.-
T Consensus       248 ~~~~~~~~h~~--~v~~v~fsp~g~~~lasgs~D  279 (344)
T 4gqb_B          248 SCVLSSAVHSQ--CVTGLVFSPHSVPFLASLSED  279 (344)
T ss_dssp             -CCEEEECCSS--CEEEEEECSSSSCCEEEEETT
T ss_pred             cEEEEEcCCCC--CEEEEEEccCCCeEEEEEeCC
Confidence            99999999988  99999999998 578888753

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.2e-32  Score=231.64  Aligned_cols=223  Identities=15%  Similarity=0.232  Sum_probs=184.0

Q ss_pred             hhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEEe-cC
Q 022303           44 LVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KR  122 (299)
Q Consensus        44 ~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~  122 (299)
                      .|++++|+|+++++++                ...|+.+++|  ++..          ...+..+.+|...|.++.| ++
T Consensus       125 ~v~~v~~s~dg~~l~s----------------~~~d~~i~iw--d~~~----------~~~~~~~~~h~~~v~~~~~~p~  176 (393)
T 1erj_A          125 YIRSVCFSPDGKFLAT----------------GAEDRLIRIW--DIEN----------RKIVMILQGHEQDIYSLDYFPS  176 (393)
T ss_dssp             BEEEEEECTTSSEEEE----------------EETTSCEEEE--ETTT----------TEEEEEECCCSSCEEEEEECTT
T ss_pred             eEEEEEECCCCCEEEE----------------EcCCCeEEEE--ECCC----------CcEEEEEccCCCCEEEEEEcCC
Confidence            4788999999988886                3366778888  3222          2234567899999999999 66


Q ss_pred             C-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEec-CCCEEE-EEcCCeEEEEecCCceeee---------eccC
Q 022303          123 G-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDF-DESKIV-GLIGTRICIWRRNGLRSVF---------PSRE  190 (299)
Q Consensus       123 ~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~-~~~d~~i~v~d~~~~~~~~---------~~~~  190 (299)
                      + +|++++.|++|++||+.++++...+..+..+..++++| ++++++ ++.|+.|++||++++....         ..|.
T Consensus       177 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~  256 (393)
T 1erj_A          177 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK  256 (393)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS
T ss_pred             CCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCC
Confidence            6 99999999999999999999998888888888899999 888888 9999999999998765322         2233


Q ss_pred             CccceeeeeccCCCeEEEecCCCcEEEEEcCCc------------ceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEE
Q 022303          191 GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR------------KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA  257 (299)
Q Consensus       191 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------------~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~  257 (299)
                      ..+. .+++++++..+++|+.|+.|++||+++.            .+...+.+|...|.+++++|+ .+|++|+.|+.|+
T Consensus       257 ~~v~-~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~  335 (393)
T 1erj_A          257 DSVY-SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL  335 (393)
T ss_dssp             SCEE-EEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred             CCEE-EEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEE
Confidence            3333 4688899999999999999999999753            344566689999999999999 9999999999999


Q ss_pred             EEeCCCCceEEEeeccCCCCcEEEEEccC------CCCeEEeeecc
Q 022303          258 ISGLSSDQRVATLRSTDCTGHIICLMYPQ------FLHMLFFLCFL  297 (299)
Q Consensus       258 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~------~g~~l~s~s~~  297 (299)
                      +||+++++++..+.+|..  .|.+++|++      ++.+|++||.-
T Consensus       336 iwd~~~~~~~~~l~~h~~--~v~~v~~~~~~~~~p~~~~l~sgs~D  379 (393)
T 1erj_A          336 FWDKKSGNPLLMLQGHRN--SVISVAVANGSSLGPEYNVFATGSGD  379 (393)
T ss_dssp             EEETTTCCEEEEEECCSS--CEEEEEECSSCTTCTTCEEEEEEETT
T ss_pred             EEECCCCeEEEEECCCCC--CEEEEEecCCcCcCCCCCEEEEECCC
Confidence            999999999999999988  899999876      68899999854

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-31  Score=223.45  Aligned_cols=235  Identities=15%  Similarity=0.131  Sum_probs=182.0

Q ss_pred             hhccCccchhhHHHh-----hh-hHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEee
Q 022303           36 FSSLGFFDLVRCSAV-----CK-SWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWK  109 (299)
Q Consensus        36 ~~~~~h~~~v~~~~~-----~~-~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~  109 (299)
                      ..+.+|.+.|++++|     ++ ++++|++                ...|+++++|.  +......   .........+.
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~s----------------gs~D~~v~iWd--~~~~~~~---~~~~~~~~~l~   73 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLIS----------------GSRDKTVMIWK--LYEEEQN---GYFGIPHKALT   73 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEE----------------EETTSCEEEEE--ECSSCCS---SBSEEEEEEEC
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEE----------------EcCCCEEEEEE--CCcCCcc---cccccccchhc
Confidence            356699999999998     66 7888887                33678888883  2211110   01122356789


Q ss_pred             ccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEecCCceee
Q 022303          110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWRRNGLRSV  185 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~  185 (299)
                      +|...|.++.| +++ ++++|+.|++|++||+.+++++..+..|...+ .++|+|++++|+ ++.|+.|++||+......
T Consensus        74 ~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~  153 (343)
T 2xzm_R           74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF  153 (343)
T ss_dssp             CCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee
Confidence            99999999999 555 99999999999999999999999999886555 499999999999 999999999999854321


Q ss_pred             -ee---ccCCccceeeeeccCC----------CeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEE
Q 022303          186 -FP---SREGTFMKGLCMRYFD----------PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG  250 (299)
Q Consensus       186 -~~---~~~~~~~~~~~~~~~~----------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~  250 (299)
                       ..   .+...+ ..+++++.+          +.+++++.|+.|++||. +.+....+..|...|.+++|+|+ ++|++|
T Consensus       154 ~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg  231 (343)
T 2xzm_R          154 SSAEKENHSDWV-SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATG  231 (343)
T ss_dssp             ECCTTTSCSSCE-EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eeecccCCCcee-eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEE
Confidence             11   222222 245666665          67999999999999994 46667778899999999999999 999999


Q ss_pred             eCCCcEEEEeCCC-CceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          251 SSLGSIAISGLSS-DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       251 ~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +.||.|++||+.+ ......+. +..  .|.+++|+|++++|++|+-
T Consensus       232 s~dg~v~iwd~~~~~~~~~~~~-~~~--~v~~v~~sp~~~~la~~~d  275 (343)
T 2xzm_R          232 GKDKKLLIWDILNLTYPQREFD-AGS--TINQIAFNPKLQWVAVGTD  275 (343)
T ss_dssp             ETTCEEEEEESSCCSSCSEEEE-CSS--CEEEEEECSSSCEEEEEES
T ss_pred             cCCCeEEEEECCCCcccceeec-CCC--cEEEEEECCCCCEEEEECC
Confidence            9999999999954 44444443 333  7999999999999887753

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3e-32  Score=225.08  Aligned_cols=229  Identities=14%  Similarity=0.057  Sum_probs=176.3

Q ss_pred             cCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCc-eeeEEeeccccCeeE
Q 022303           39 LGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGR-IDIDQWKAHSVGVDQ  117 (299)
Q Consensus        39 ~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~-~~~~~~~~h~~~i~~  117 (299)
                      .+|.+.|++++|++++++|++                ...|+++++|..  .         .+. ..+..+++|.++|++
T Consensus        10 ~~H~~~V~~v~~s~~g~~las----------------gs~D~~v~lwd~--~---------~~~~~~~~~l~gH~~~V~~   62 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTRLAT----------------CSSDRSVKIFDV--R---------NGGQILIADLRGHEGPVWQ   62 (316)
T ss_dssp             ----CCEEEEEECGGGCEEEE----------------EETTTEEEEEEE--E---------TTEEEEEEEEECCSSCEEE
T ss_pred             ccccCeEEEeeEcCCCCEEEE----------------EeCCCeEEEEEe--c---------CCCcEEEEEEcCCCccEEE
Confidence            489999999999999999997                346788899832  2         222 235677999999999


Q ss_pred             EEe-cC--C-EEEEEeCCCcEEEEecCCce--eEEEecCCCce-eEEEEecC--CCEEE-EEcCCeEEEEecCCce----
Q 022303          118 CRM-KR--G-LILTGVGDKVMRLWSLEGYK--CVEEYSLPNAA-SLVDFDFD--ESKIV-GLIGTRICIWRRNGLR----  183 (299)
Q Consensus       118 ~~~-~~--~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~-~~~~~~~~--~~~l~-~~~d~~i~v~d~~~~~----  183 (299)
                      +.| ++  + +|++|+.|++|++||+.+++  ....+..|... ..++|+|+  +.+|+ ++.|+.|++||+++..    
T Consensus        63 v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~  142 (316)
T 3bg1_A           63 VAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV  142 (316)
T ss_dssp             EEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred             EEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence            999 32  4 99999999999999999874  56667777654 45999998  67788 9999999999998752    


Q ss_pred             -eeeeccCCccceeeeeccC-----------------CCeEEEecCCCcEEEEEcCCc---ceeeeccccCCceeEEEeC
Q 022303          184 -SVFPSREGTFMKGLCMRYF-----------------DPEAVVGCEDGTARVFDMYSR---KCSQIIRMHCAPVTSLSLS  242 (299)
Q Consensus       184 -~~~~~~~~~~~~~~~~~~~-----------------~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~  242 (299)
                       ..+..|..... .++|+|.                 +..|++|+.|+.|++||++..   +.+..+.+|...|.+++|+
T Consensus       143 ~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~s  221 (316)
T 3bg1_A          143 KKINNAHTIGCN-AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA  221 (316)
T ss_dssp             CCBTTSSSSCBC-CCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECC
T ss_pred             eeeeccccCCcc-eEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEec
Confidence             12233333322 3466665                 356999999999999999754   4667788999999999999


Q ss_pred             CC-----CeEEEEeCCCcEEEEeCCCC---c-eEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          243 ED-----QLIISGSSLGSIAISGLSSD---Q-RVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       243 ~~-----~~l~~~~~dg~i~iwd~~~~---~-~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      |+     .+|++|+.|++|++||+++.   + ....+..|..  .|.+++|+|+|++|++|+.-
T Consensus       222 p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~--~v~~v~~sp~g~~las~~~D  283 (316)
T 3bg1_A          222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFND--VVWHVSWSITANILAVSGGD  283 (316)
T ss_dssp             CCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSS--CEEEEEECTTTCCEEEEESS
T ss_pred             CCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCC--cEEEEEEcCCCCEEEEEcCC
Confidence            86     58999999999999999762   1 2234555666  89999999999999999854

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.6e-32  Score=244.77  Aligned_cols=270  Identities=11%  Similarity=0.073  Sum_probs=208.2

Q ss_pred             cchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcccc
Q 022303           21 RATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHR   95 (299)
Q Consensus        21 ~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (299)
                      ...+.+|+.+....+..+.+|.+.|++++|+|++++||+     ++++|+..............+.  -.+.++.|+|++
T Consensus        38 ~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~--~~v~~v~fs~dg  115 (611)
T 1nr0_A           38 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS--GPVKDISWDSES  115 (611)
T ss_dssp             TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS--SCEEEEEECTTS
T ss_pred             CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccC--CceEEEEECCCC
Confidence            457889998776667778899999999999999999998     5778864211100000000011  123367788888


Q ss_pred             ceeecCce---------------eeEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCCCcee-E
Q 022303           96 FALEEGRI---------------DIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-L  156 (299)
Q Consensus        96 ~~l~~g~~---------------~~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~  156 (299)
                      +.++.+..               ....+.+|...|+++.| |++  .|++|+.|++|++||..++++...+..|...+ .
T Consensus       116 ~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~  195 (611)
T 1nr0_A          116 KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS  195 (611)
T ss_dssp             CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEE
T ss_pred             CEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEE
Confidence            77664331               13456899999999999 555  69999999999999999999999999887655 4


Q ss_pred             EEEecCCCEEE-EEcCCeEEEEecCCceee--ee-------ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCccee
Q 022303          157 VDFDFDESKIV-GLIGTRICIWRRNGLRSV--FP-------SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS  226 (299)
Q Consensus       157 ~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  226 (299)
                      ++|+|++++|+ ++.|++|++||+.+++..  +.       .|.+.+. .++|+|++..|++++.|++|++||+++++.+
T Consensus       196 v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~-~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~  274 (611)
T 1nr0_A          196 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF-GLTWSPDGTKIASASADKTIKIWNVATLKVE  274 (611)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEE-EEEECCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence            99999999999 999999999999876532  21       3444443 4689999999999999999999999877654


Q ss_pred             ee-------------------------------------------ccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022303          227 QI-------------------------------------------IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS  262 (299)
Q Consensus       227 ~~-------------------------------------------~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~  262 (299)
                      ..                                           +.+|...|++++|+|+ ++|++++.|++|++||+.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~  354 (611)
T 1nr0_A          275 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS  354 (611)
T ss_dssp             EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Confidence            32                                           3468889999999999 999999999999999999


Q ss_pred             CCceEEEe-eccCCCCcEEEEEccCCCCeEEeeec
Q 022303          263 SDQRVATL-RSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       263 ~~~~~~~~-~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ++++...+ ..|..  .|.+++|++++ .|++++.
T Consensus       355 ~~~~~~~~~~~h~~--~v~~~~~s~~~-~l~s~s~  386 (611)
T 1nr0_A          355 TGISNRVFPDVHAT--MITGIKTTSKG-DLFTVSW  386 (611)
T ss_dssp             TCCEEECSSCSCSS--CEEEEEECTTS-CEEEEET
T ss_pred             CCceeeecccCCcc--eEEEEEECCCC-cEEEEEc
Confidence            99887665 45655  89999999876 5566654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.8e-31  Score=227.05  Aligned_cols=240  Identities=15%  Similarity=0.153  Sum_probs=180.3

Q ss_pred             hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCce--------eeEEe
Q 022303           37 SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRI--------DIDQW  108 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~--------~~~~~  108 (299)
                      ..++|.+.|.|++|+|+++++++.                 .+..+++|  ++..+.....+.....        .....
T Consensus        59 ~~~~h~~~V~~v~fspdg~~la~g-----------------~~~~v~i~--~~~~g~~~~~l~~~~~~~~~~~~~~~~~~  119 (393)
T 1erj_A           59 KSLDHTSVVCCVKFSNDGEYLATG-----------------CNKTTQVY--RVSDGSLVARLSDDSAANKDPENLNTSSS  119 (393)
T ss_dssp             EEEECSSCCCEEEECTTSSEEEEE-----------------CBSCEEEE--ETTTCCEEEEECC----------------
T ss_pred             EecCCCCEEEEEEECCCCCEEEEE-----------------cCCcEEEE--EecCCCEEEEecCcccccccccccccccc
Confidence            345799999999999999999871                 23344555  2222111111100000        00111


Q ss_pred             eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEecCCcee
Q 022303          109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWRRNGLRS  184 (299)
Q Consensus       109 ~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~  184 (299)
                      ..+...|.++.| +++ +|++|+.|++|++||+.+++.+..+..|...+ .++|+|+++.|+ ++.|+.|++||+++++.
T Consensus       120 ~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~  199 (393)
T 1erj_A          120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC  199 (393)
T ss_dssp             -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             CCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee
Confidence            233446999999 666 99999999999999999999999999887655 499999999999 99999999999998764


Q ss_pred             eeeccCCccceeeeecc-CCCeEEEecCCCcEEEEEcCCcceeeec-------cccCCceeEEEeCCC-CeEEEEeCCCc
Q 022303          185 VFPSREGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSRKCSQII-------RMHCAPVTSLSLSED-QLIISGSSLGS  255 (299)
Q Consensus       185 ~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~~~~-~~l~~~~~dg~  255 (299)
                      ............+++++ ++..+++|+.|+.|++||+++++.+..+       .+|...|.+++|+|+ ++|++|+.|+.
T Consensus       200 ~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~  279 (393)
T 1erj_A          200 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS  279 (393)
T ss_dssp             EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence            33222222233457887 6778999999999999999998877666       468899999999999 99999999999


Q ss_pred             EEEEeCCCC------------ceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          256 IAISGLSSD------------QRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       256 i~iwd~~~~------------~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      |++||+++.            .+...+.+|..  .|.+++|+|++++|++|+.-
T Consensus       280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~sgs~D  331 (393)
T 1erj_A          280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD--FVLSVATTQNDEYILSGSKD  331 (393)
T ss_dssp             EEEEEC---------------CEEEEEECCSS--CEEEEEECGGGCEEEEEETT
T ss_pred             EEEEECCCCCCcccccCCCCCcceEEEecccC--cEEEEEECCCCCEEEEEeCC
Confidence            999999753            45667778887  89999999999999999864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.6e-32  Score=227.33  Aligned_cols=258  Identities=13%  Similarity=0.130  Sum_probs=198.5

Q ss_pred             CCCCCCCCCCCcchhccCcHHHHHHHh---hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhh
Q 022303           10 SPPPKKRSSKPRATIESLNGDIICMIF---SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHL   86 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~   86 (299)
                      ++.+..+.++.+.++++|+.+....+.   ...+|.+.|.+++|+|++++|++                ...|.++++|.
T Consensus        26 p~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s----------------~s~D~~v~iw~   89 (345)
T 3fm0_A           26 PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLAS----------------ASFDATTCIWK   89 (345)
T ss_dssp             TTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEE----------------EETTSCEEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEE----------------EECCCcEEEEE
Confidence            345566777788999999987653221   22489999999999999999987                33577788883


Q ss_pred             hhhhhccccceeecCc-eeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCc---eeEEEecCCCcee-EEEE
Q 022303           87 EELAMKHHRFALEEGR-IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY---KCVEEYSLPNAAS-LVDF  159 (299)
Q Consensus        87 ~~~~~~~~~~~l~~g~-~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~-~~~~  159 (299)
                      .           ..+. ..+.++.+|.+.|.++.| +++ +|++|+.|++|++||+.++   +++..+..|...+ .++|
T Consensus        90 ~-----------~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  158 (345)
T 3fm0_A           90 K-----------NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW  158 (345)
T ss_dssp             E-----------CCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred             c-----------cCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence            2           1122 235677899999999999 666 9999999999999999865   3456677776555 4999


Q ss_pred             ecCCCEEE-EEcCCeEEEEecCCce----eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc-----------
Q 022303          160 DFDESKIV-GLIGTRICIWRRNGLR----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-----------  223 (299)
Q Consensus       160 ~~~~~~l~-~~~d~~i~v~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----------  223 (299)
                      +|++++|+ ++.|+.|++||.++..    ..+..|...+. .++|+|++.+|++++.|+.|++||....           
T Consensus       159 ~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~-~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~  237 (345)
T 3fm0_A          159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVW-SLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS  237 (345)
T ss_dssp             CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred             CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceE-EEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence            99999999 9999999999998764    23455555544 4689999999999999999999996432           


Q ss_pred             ----ceeeeccc-cCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc----e-----EEEeeccCCCCcEEEEEccCCC
Q 022303          224 ----KCSQIIRM-HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ----R-----VATLRSTDCTGHIICLMYPQFL  288 (299)
Q Consensus       224 ----~~~~~~~~-~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~----~-----~~~~~~~~~~~~i~~~~~s~~g  288 (299)
                          +++..+.+ |...|.+++|+|+ ..|++++.|+.|++|+...+.    .     .....+|..  .|++++|+|++
T Consensus       238 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~v~~~p~~  315 (345)
T 3fm0_A          238 DPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQ--DVNCVAWNPKE  315 (345)
T ss_dssp             -CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSS--CEEEEEECSSS
T ss_pred             CCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccC--cEeEeEEeCCC
Confidence                22333333 7889999999999 899999999999999987542    1     122345666  89999999998


Q ss_pred             C-eEEeeecc
Q 022303          289 H-MLFFLCFL  297 (299)
Q Consensus       289 ~-~l~s~s~~  297 (299)
                      . +|++||.-
T Consensus       316 ~~~laS~s~D  325 (345)
T 3fm0_A          316 PGLLASCSDD  325 (345)
T ss_dssp             TTEEEEEETT
T ss_pred             ceEEEEcCCC
Confidence            4 89998864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.98  E-value=3.5e-31  Score=221.38  Aligned_cols=233  Identities=14%  Similarity=0.079  Sum_probs=184.4

Q ss_pred             hhccCccc-hhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccC
Q 022303           36 FSSLGFFD-LVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVG  114 (299)
Q Consensus        36 ~~~~~h~~-~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~  114 (299)
                      ..+.+|.+ .|.+++|+|++++|++                ...|+.+++|..  ......       .......+|...
T Consensus         9 ~~~~~h~~~~v~~l~~sp~g~~las----------------~~~D~~i~iw~~--~~~~~~-------~~~~~~~~h~~~   63 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAWNPAGTLLAS----------------CGGDRRIRIWGT--EGDSWI-------CKSVLSEGHQRT   63 (345)
T ss_dssp             EEECCSTTSCEEEEEECTTSSCEEE----------------EETTSCEEEEEE--ETTEEE-------EEEEECSSCSSC
T ss_pred             eeecCCCCCcEEEEEECCCCCEEEE----------------EcCCCeEEEEEc--CCCcce-------eeeeeccccCCc
Confidence            35568887 8999999999999997                336788888832  111100       011223689999


Q ss_pred             eeEEEe-cCC-EEEEEeCCCcEEEEecCCc--eeEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEecCCce-----
Q 022303          115 VDQCRM-KRG-LILTGVGDKVMRLWSLEGY--KCVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWRRNGLR-----  183 (299)
Q Consensus       115 i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~~~~-----  183 (299)
                      |.+++| +++ +|++|+.|+++++||..++  +++..+.+|...+ .++|+|++++|+ ++.|+.|++||+.+..     
T Consensus        64 v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~  143 (345)
T 3fm0_A           64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV  143 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEE
Confidence            999999 666 9999999999999998876  4677888886555 499999999999 9999999999998653     


Q ss_pred             eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcc--eeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEe
Q 022303          184 SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG  260 (299)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd  260 (299)
                      ..+..+...+. .++|+|++..|++++.|+.|++||.++++  ....+.+|...|.+++|+|+ ++|++|+.|++|++||
T Consensus       144 ~~~~~h~~~v~-~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~  222 (345)
T 3fm0_A          144 SVLNSHTQDVK-HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR  222 (345)
T ss_dssp             EEECCCCSCEE-EEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEecCcCCCeE-EEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence            23344444443 46899999999999999999999998765  34677799999999999999 9999999999999999


Q ss_pred             CCC---------------CceEEEeec-cCCCCcEEEEEccCCCCeEEeeec
Q 022303          261 LSS---------------DQRVATLRS-TDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       261 ~~~---------------~~~~~~~~~-~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ...               .+++.++.+ |..  .|.+++|+|++..|++++.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~~~  272 (345)
T 3fm0_A          223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSR--TIYDIAWCQLTGALATACG  272 (345)
T ss_dssp             EECTTCTTCCCCC---CEEEEEEEECSSCSS--CEEEEEECTTTCCEEEEET
T ss_pred             cccCCCCccceeeccCCccceeEEecCCCCC--cEEEEEEecCCCEEEEEeC
Confidence            632               134555555 444  8999999999999999875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.98  E-value=9.3e-32  Score=239.45  Aligned_cols=246  Identities=16%  Similarity=0.200  Sum_probs=203.6

Q ss_pred             CCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcccc
Q 022303           16 RSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHR   95 (299)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (299)
                      ..+..+..+++|+.+. .++..+.+|...|.+++++|+++.+++                ...++.+++|..        
T Consensus       319 ~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~----------------~~~dg~v~~~~~--------  373 (577)
T 2ymu_A          319 ASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIAS----------------ASDDKTVKLWNR--------  373 (577)
T ss_dssp             EEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEE----------------EETTSEEEEEET--------
T ss_pred             EEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEE----------------EeCCCEEEEEcC--------
Confidence            3344566788898653 345566789999999999999999886                225566677721        


Q ss_pred             ceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcC
Q 022303           96 FALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIG  171 (299)
Q Consensus        96 ~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d  171 (299)
                           ....+..+.+|...|.++.| +++ +|++++.|+.|++||. +++.+..+..|...+. ++|+|+++.++ ++.|
T Consensus       374 -----~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d  447 (577)
T 2ymu_A          374 -----NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD  447 (577)
T ss_dssp             -----TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             -----CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence                 12235567899999999999 666 9999999999999995 5778888887766554 99999999999 9999


Q ss_pred             CeEEEEecCCce-eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEE
Q 022303          172 TRICIWRRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIIS  249 (299)
Q Consensus       172 ~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~  249 (299)
                      +.|++||..... ..+..+...+. .++++|++..+++++.|+.|++||. +++.+..+.+|...|++++|+|+ ++|++
T Consensus       448 ~~v~~w~~~~~~~~~~~~~~~~v~-~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s  525 (577)
T 2ymu_A          448 KTVKLWNRNGQLLQTLTGHSSSVR-GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS  525 (577)
T ss_dssp             SEEEEEETTSCEEEEEECCSSCEE-EEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred             CEEEEEECCCCEEEEEcCCCCCEE-EEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEE
Confidence            999999986553 44555555544 5689999999999999999999995 58888899999999999999999 99999


Q ss_pred             EeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          250 GSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       250 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ++.||.|++||. +++++.++.+|..  +|++++|+|||++|++++.-
T Consensus       526 ~~~dg~v~lwd~-~~~~~~~~~~h~~--~v~~~~fs~dg~~l~s~~~D  570 (577)
T 2ymu_A          526 ASDDKTVKLWNR-NGQLLQTLTGHSS--SVWGVAFSPDGQTIASASSD  570 (577)
T ss_dssp             EETTSEEEEECT-TSCEEEEEECCSS--CEEEEEECTTSSCEEEEETT
T ss_pred             EECcCEEEEEeC-CCCEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCC
Confidence            999999999996 6899999999988  99999999999999999854

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9e-32  Score=223.59  Aligned_cols=261  Identities=15%  Similarity=0.119  Sum_probs=186.6

Q ss_pred             CCCCCCCcchhccCcHHHHH--HHhhc-cC-ccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhh
Q 022303           14 KKRSSKPRATIESLNGDIIC--MIFSS-LG-FFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEEL   89 (299)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~--~i~~~-~~-h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~   89 (299)
                      ..+.+..+.++++|+.+...  .+..+ .+ |.+.|.+++|+|+++++++                ...|+++++|..  
T Consensus        26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las----------------~s~D~~v~iw~~--   87 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAA----------------GSFDSTVSIWAK--   87 (330)
T ss_dssp             EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEE----------------EETTSCEEEEEC--
T ss_pred             EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEE----------------EeCCCcEEEEEc--
Confidence            44555677888999876431  12223 34 9999999999999998887                336778888832  


Q ss_pred             hhccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCC----ceeEEEecCCCcee-EEEEecC
Q 022303           90 AMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG----YKCVEEYSLPNAAS-LVDFDFD  162 (299)
Q Consensus        90 ~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~-~~~~~~~  162 (299)
                      ......   ......+..+.+|.+.|.++.| |++ +|++|+.|++|++||+..    .+++..+..|...+ .++|+|+
T Consensus        88 ~~~~~~---~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~  164 (330)
T 2hes_X           88 EESADR---TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS  164 (330)
T ss_dssp             ----------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSS
T ss_pred             ccCcCc---cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCC
Confidence            211100   0011235677899999999999 666 999999999999999942    35677788776555 5999999


Q ss_pred             CCEEE-EEcCCeEEEEecCCce----eeeeccCCccceeeeeccC--CCeEEEecCCCcEEEEEcCCc--------ceee
Q 022303          163 ESKIV-GLIGTRICIWRRNGLR----SVFPSREGTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSR--------KCSQ  227 (299)
Q Consensus       163 ~~~l~-~~~d~~i~v~d~~~~~----~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~--------~~~~  227 (299)
                      +.+|+ ++.|+.|++||..+..    ..+..|.+.+. .++++++  +..+++|+.|+.|++||++.+        ....
T Consensus       165 ~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~  243 (330)
T 2hes_X          165 EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVW-SSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEA  243 (330)
T ss_dssp             SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEE-EEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEee
Confidence            99999 9999999999987652    34455555543 4577777  456999999999999999764        3344


Q ss_pred             eccc-cCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCc--eEEEe-eccCCCCcEEEEEccC--CCCeEEeeecc
Q 022303          228 IIRM-HCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQ--RVATL-RSTDCTGHIICLMYPQ--FLHMLFFLCFL  297 (299)
Q Consensus       228 ~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~-~~~~~~~~i~~~~~s~--~g~~l~s~s~~  297 (299)
                      .+.. |...|.+++|+++.+|++++.||.|++||..+++  .+... ..|... .|.+++|+|  ++++|++||.-
T Consensus       244 ~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~-~v~~v~~~~~~~~~~las~s~D  318 (330)
T 2hes_X          244 ILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVY-EINVVKWLELNGKTILATGGDD  318 (330)
T ss_dssp             ECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTS-CEEEEEEC-----CCEEEEETT
T ss_pred             ecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccc-eEEEEEEecCCCceEEEEecCC
Confidence            4444 8899999999987889999999999999998774  33333 344432 699999999  78999999864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=3.5e-29  Score=215.63  Aligned_cols=271  Identities=18%  Similarity=0.248  Sum_probs=209.0

Q ss_pred             cchhccCcHH----HHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhc-C-----------------C-CCC
Q 022303           21 RATIESLNGD----IICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLH-G-----------------F-SNT   77 (299)
Q Consensus        21 ~~~~~~~~~~----~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~-~-----------------~-~~~   77 (299)
                      .+.+..||.|    +..+|+++|+..++.+|..+|+.|+.++.+..+|+.+|.+.. .                 . ..+
T Consensus         8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   87 (435)
T 1p22_A            8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKP   87 (435)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC----
T ss_pred             cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCC
Confidence            4678889999    999999999999999999999999999998899999876542 0                 0 000


Q ss_pred             ------CCchhhhhhhhh--------------------------------hhccccceeecCcee-------------eE
Q 022303           78 ------SGSSMRLHLEEL--------------------------------AMKHHRFALEEGRID-------------ID  106 (299)
Q Consensus        78 ------~d~~~~~~~~~~--------------------------------~~~~~~~~l~~g~~~-------------~~  106 (299)
                            .....+.....+                                .+..++..++.|..+             +.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~  167 (435)
T 1p22_A           88 PDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR  167 (435)
T ss_dssp             -----CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEE
T ss_pred             CCCCCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEE
Confidence                  001111111000                                001112223332221             45


Q ss_pred             EeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCcee
Q 022303          107 QWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRS  184 (299)
Q Consensus       107 ~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~  184 (299)
                      .+.+|.+.|.++.+.+++|++|+.||+|++||+.+++.+..+..|...+. ++|+  +..++ ++.|+.|++||+.+...
T Consensus       168 ~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~  245 (435)
T 1p22_A          168 ILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTD  245 (435)
T ss_dssp             EECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSC
T ss_pred             EEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCC
Confidence            66799999999999666999999999999999999999999988766554 7775  45777 99999999999987642


Q ss_pred             e--eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022303          185 V--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLS  262 (299)
Q Consensus       185 ~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~  262 (299)
                      .  .....++...+.++.+++..+++|+.|+.|++||+++++.+..+..|...|.++.++ +.++++|+.||.|++||++
T Consensus       246 ~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~g~~dg~i~iwd~~  324 (435)
T 1p22_A          246 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIE  324 (435)
T ss_dssp             CEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-TTEEEEEETTSCEEEEETT
T ss_pred             ceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-CCEEEEEeCCCeEEEEECC
Confidence            2  122223333355666788899999999999999999999999999999999999994 3689999999999999999


Q ss_pred             CCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          263 SDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       263 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      +++++.++.+|..  .|.+++|  ++.+|++|+..+
T Consensus       325 ~~~~~~~~~~h~~--~v~~~~~--~~~~l~sg~~dg  356 (435)
T 1p22_A          325 CGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDG  356 (435)
T ss_dssp             TCCEEEEECCCSS--CEEEEEC--CSSEEEEEETTS
T ss_pred             CCCEEEEEeCCcC--cEEEEEe--cCCEEEEEeCCC
Confidence            9999999999988  8999999  788999998643

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.97  E-value=1e-31  Score=225.53  Aligned_cols=248  Identities=11%  Similarity=0.060  Sum_probs=172.9

Q ss_pred             cchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhh----hhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccc
Q 022303           21 RATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINR----CKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRF   96 (299)
Q Consensus        21 ~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~----~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (299)
                      ......|+.+..    ....|...|++++|+|+|++|++.    .++|              |..+++|  .........
T Consensus        25 ~~~~~~w~~p~~----~p~~H~~~V~~v~fSpDG~~las~s~d~~~~w--------------d~~v~~~--~~~~~~~~~   84 (357)
T 4g56_B           25 SSKGSAWGRPVT----APACMEVQIGAVRYRRDGALLLAASSLSSRTW--------------GGSIWVF--KDPEGAPNE   84 (357)
T ss_dssp             -------------------CCCSEEEEEEECSSSCEEEEEECSSSSSC--------------CEEEEEE--SSCC---CG
T ss_pred             CccccccCCCCC----CcccccCCEEEEEECCCCCEEEEEcCCCCccc--------------cCeEEEE--ECCCCCcce
Confidence            344455665432    234799999999999999999971    1112              2333333  111111110


Q ss_pred             eeecCceeeEEeeccccCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEE----ecCCC-ceeEEEEecCCCEEE-EE
Q 022303           97 ALEEGRIDIDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEE----YSLPN-AASLVDFDFDESKIV-GL  169 (299)
Q Consensus        97 ~l~~g~~~~~~~~~h~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~-~~~~~~~~~~~~~l~-~~  169 (299)
                            .......+|...|.+++| +++.+++++.||+|++||+.+++....    ...|. .+..++|+|++++|+ ++
T Consensus        85 ------~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs  158 (357)
T 4g56_B           85 ------SLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG  158 (357)
T ss_dssp             ------GGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred             ------eEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe
Confidence                  012233579999999999 667888899999999999998875432    22454 455599999999999 99


Q ss_pred             cCCeEEEEecCCcee--eeeccCCccceeeeeccCCC-eEEEecCCCcEEEEEcCCcceeeecc--ccCCceeEEEeCCC
Q 022303          170 IGTRICIWRRNGLRS--VFPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED  244 (299)
Q Consensus       170 ~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~  244 (299)
                      .|+.|++||+++++.  .+..+.+.+. .++++++++ .+++++.|+.|++||+++++....+.  .+...+.+++|+|+
T Consensus       159 ~dg~v~iwd~~~~~~~~~~~~h~~~v~-~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~  237 (357)
T 4g56_B          159 KDFSVKVWDLSQKAVLKSYNAHSSEVN-CVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPE  237 (357)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTT
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCCEE-EEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhc
Confidence            999999999998763  3445555544 457777775 58899999999999999988766554  56778999999987


Q ss_pred             --CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCC-CeEEeeecc
Q 022303          245 --QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL-HMLFFLCFL  297 (299)
Q Consensus       245 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~s~s~~  297 (299)
                        .+|++|+.|+.|++||+++++++.++..+..  .|++++|+|++ ++|++|+.-
T Consensus       238 ~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~~lasgs~D  291 (357)
T 4g56_B          238 KDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ--NITGLAYSYHSSPFLASISED  291 (357)
T ss_dssp             STTEEEEEESSSCEEEEESSCGGGCEEECCCSS--CEEEEEECSSSSCCEEEEETT
T ss_pred             ccceEEEeecccceeEEECCCCcEeEEEeccce--eEEEEEEcCCCCCEEEEEeCC
Confidence              6899999999999999999999999999988  99999999987 578888753

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=4.6e-29  Score=205.48  Aligned_cols=192  Identities=18%  Similarity=0.240  Sum_probs=168.1

Q ss_pred             eeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEec
Q 022303          104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRR  179 (299)
Q Consensus       104 ~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~  179 (299)
                      ...++.+|.++|+++.| +++ +|++|+.||.|++|+..+++....+..|...+. ++|+|++++|+ ++.|+.|++||+
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   94 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV   94 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence            35677899999999999 666 999999999999999999999999988876555 99999999999 999999999999


Q ss_pred             CCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcE
Q 022303          180 NGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSI  256 (299)
Q Consensus       180 ~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i  256 (299)
                      ++.+  ..+..+...+. .+++++++..+++++.|+.|++||+++++.+..+..|..+|.+++|+|+ ++|++++.||.|
T Consensus        95 ~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (312)
T 4ery_A           95 SSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  173 (312)
T ss_dssp             TTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCCcEEEEEcCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcE
Confidence            8875  34455555443 4688999999999999999999999999999999899999999999999 999999999999


Q ss_pred             EEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          257 AISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ++||+++++.+..+..+... ++..++|+|++++|++++.-
T Consensus       174 ~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d  213 (312)
T 4ery_A          174 RIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLD  213 (312)
T ss_dssp             EEEETTTCCEEEEECCSSCC-CEEEEEECTTSSEEEEEETT
T ss_pred             EEEECCCCceeeEEeccCCC-ceEEEEECCCCCEEEEEcCC
Confidence            99999999988887654433 89999999999999998853

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=6.4e-29  Score=214.58  Aligned_cols=266  Identities=16%  Similarity=0.237  Sum_probs=211.5

Q ss_pred             CcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhc-CCCCC-----------CCchhhhhhh
Q 022303           20 PRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLH-GFSNT-----------SGSSMRLHLE   87 (299)
Q Consensus        20 ~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~-~~~~~-----------~d~~~~~~~~   87 (299)
                      ..+.+..||.|+...|+++++..+++++..+|+.|+.++.+..+|+.++.+.. .....           ....++..+.
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~   94 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYI   94 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHh
Confidence            45678899999999999999999999999999999999998889999886543 11000           1122222111


Q ss_pred             hhhhccccceeecCce-eeEEeeccccCe-eEEEecCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCC
Q 022303           88 ELAMKHHRFALEEGRI-DIDQWKAHSVGV-DQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDES  164 (299)
Q Consensus        88 ~~~~~~~~~~l~~g~~-~~~~~~~h~~~i-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~  164 (299)
                        ........+..+.. ..+.+.+|.+.| .++.+.+++|++|+.||+|++||+.+++.+..+..|...+. ++++  ++
T Consensus        95 --~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~  170 (445)
T 2ovr_B           95 --RQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DN  170 (445)
T ss_dssp             --HHHHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TT
T ss_pred             --hhhhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CC
Confidence              11112234444544 367789999875 56666766999999999999999999999999998876554 8886  56


Q ss_pred             EEE-EEcCCeEEEEecCCceee--eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEe
Q 022303          165 KIV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSL  241 (299)
Q Consensus       165 ~l~-~~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~  241 (299)
                      .++ ++.||.|++||+.+++..  +..+..   .+.++.+.+..+++|+.|+.|++||+++++.+..+..|...|.++++
T Consensus       171 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~---~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  247 (445)
T 2ovr_B          171 IIISGSTDRTLKVWNAETGECIHTLYGHTS---TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY  247 (445)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSS---CEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCcCcEEEEECCCCC---cEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE
Confidence            777 999999999999987633  333333   35566777888999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          242 SEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       242 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                       .++++++|+.||.|++||+++++++.++..|..  .|.+++|  ++.++++|+.-
T Consensus       248 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~d  298 (445)
T 2ovr_B          248 -DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN--RVYSLQF--DGIHVVSGSLD  298 (445)
T ss_dssp             -CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS--CEEEEEE--CSSEEEEEETT
T ss_pred             -CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCC--ceEEEEE--CCCEEEEEeCC
Confidence             337899999999999999999999999998887  8999999  88899998754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=8.1e-32  Score=227.57  Aligned_cols=226  Identities=13%  Similarity=0.069  Sum_probs=177.3

Q ss_pred             CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCc-eeeEEeeccccCeeEE
Q 022303           40 GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGR-IDIDQWKAHSVGVDQC  118 (299)
Q Consensus        40 ~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~-~~~~~~~~h~~~i~~~  118 (299)
                      .|.+.|+|++|+|+++++++                ...|+.+++|..  .         .+. ..+..+.+|.+.|.++
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~----------------~~~d~~i~iw~~--~---------~~~~~~~~~~~~h~~~v~~~   61 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVT----------------TTATNQVELYEQ--D---------GNGWKHARTFSDHDKIVTCV   61 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEEC----------------CCSSSCBCEEEE--E---------TTEEEECCCBCCCSSCEEEE
T ss_pred             cCCCcEEEEEECCCCCEEEE----------------ecCCCEEEEEEc--c---------CCceEEEEEEecCCceEEEE
Confidence            35678999999999999987                335777888832  2         111 3355668999999999


Q ss_pred             Ee-cCC-EEEEEeCCCcEEEEecCCce---eEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEecCCce-----eee
Q 022303          119 RM-KRG-LILTGVGDKVMRLWSLEGYK---CVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWRRNGLR-----SVF  186 (299)
Q Consensus       119 ~~-~~~-~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~~~~-----~~~  186 (299)
                      .| +++ +|++++.|++|++||+.+++   ....+..|...+ .++|+|+++.|+ ++.|+.|++||+++..     ..+
T Consensus        62 ~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  141 (377)
T 3dwl_C           62 DWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHL  141 (377)
T ss_dssp             EECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEE
T ss_pred             EEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEe
Confidence            99 555 99999999999999999877   566666665544 599999999988 9999999999998764     233


Q ss_pred             ec-cCCccceeeeeccCCCeEEEecCCCcEEEEEcC------------------CcceeeeccccCCceeEEEeCCC-Ce
Q 022303          187 PS-REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY------------------SRKCSQIIRMHCAPVTSLSLSED-QL  246 (299)
Q Consensus       187 ~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~------------------~~~~~~~~~~~~~~i~~~~~~~~-~~  246 (299)
                      .. +...+. .+++++++..+++++.|+.|++||++                  .++.+..+ .|...|.+++|+|+ ++
T Consensus       142 ~~~h~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~  219 (377)
T 3dwl_C          142 KRPLRSTIL-SLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA  219 (377)
T ss_dssp             CSSCCSCEE-EEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC
T ss_pred             ecccCCCeE-EEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCE
Confidence            33 444433 56889999999999999999999985                  35566677 89999999999999 99


Q ss_pred             EEEEeCCCcEEEEeCCCCce----EEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          247 IISGSSLGSIAISGLSSDQR----VATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       247 l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      |++++.||.|++||+++++.    +..+..|..  +|.+++|+|+|++|++|+.
T Consensus       220 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~  271 (377)
T 3dwl_C          220 LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL--PLRSLLWANESAIVAAGYN  271 (377)
T ss_dssp             EEEEETTTEEC-CEECSTTSCEEECCCEECSSS--CEEEEEEEETTEEEEEESS
T ss_pred             EEEEeCCCcEEEEECCCCCCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcC
Confidence            99999999999999999987    788888887  8999999999999999874

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=3.6e-29  Score=209.90  Aligned_cols=191  Identities=15%  Similarity=0.118  Sum_probs=167.7

Q ss_pred             eeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCc-eeEEEEecCCCEEE-EEcCCeEEEEec
Q 022303          104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIGTRICIWRR  179 (299)
Q Consensus       104 ~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~d~~i~v~d~  179 (299)
                      ..+++++|.+.|+++.| +++ +|+||+.||+|++||..+++....+..+.. +..++|+|++..++ ++.|+.+++|++
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL  135 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence            36778999999999999 666 999999999999999999998888887654 44599999999999 999999999998


Q ss_pred             CCce--------eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC---CeEE
Q 022303          180 NGLR--------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED---QLII  248 (299)
Q Consensus       180 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~---~~l~  248 (299)
                      ....        ..+..|.+.+. .++|++++..+++++.|+.|++||+++++.+..+.+|...|.+++++|+   .+|+
T Consensus       136 ~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~  214 (354)
T 2pbi_B          136 TFDKNENMAAKKKSVAMHTNYLS-ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV  214 (354)
T ss_dssp             CCCTTCCSGGGCEEEEECSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred             eccccccccccceeeeccCCcEE-EEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence            6431        33444555444 4588888989999999999999999999999999999999999999873   6999


Q ss_pred             EEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          249 SGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       249 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +|+.||.|++||+++++++..+..|..  .|++++|+|++.+|++|+.-
T Consensus       215 sgs~Dg~v~~wd~~~~~~~~~~~~h~~--~v~~v~~~p~~~~l~s~s~D  261 (354)
T 2pbi_B          215 SGGCDKKAMVWDMRSGQCVQAFETHES--DVNSVRYYPSGDAFASGSDD  261 (354)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETT
T ss_pred             EEeCCCeEEEEECCCCcEEEEecCCCC--CeEEEEEeCCCCEEEEEeCC
Confidence            999999999999999999999999988  99999999999999999864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=8.5e-31  Score=219.87  Aligned_cols=244  Identities=12%  Similarity=0.132  Sum_probs=189.6

Q ss_pred             cCcHHHHHHHhhccCccchhhHHHhhhh---HHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCc
Q 022303           26 SLNGDIICMIFSSLGFFDLVRCSAVCKS---WNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGR  102 (299)
Q Consensus        26 ~~~~~~~~~i~~~~~h~~~v~~~~~~~~---~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~  102 (299)
                      .++......+..+.+|.+.|+|++|+|+   ++++++                ...|+.+++|..  ..        .+.
T Consensus        23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~----------------~~~dg~i~iw~~--~~--------~~~   76 (368)
T 3mmy_A           23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIA----------------GSWANDVRCWEV--QD--------SGQ   76 (368)
T ss_dssp             CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEE----------------EETTSEEEEEEE--CT--------TSC
T ss_pred             cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEE----------------ECCCCcEEEEEc--CC--------CCc
Confidence            3444444455566799999999999999   588886                235677888833  11        022


Q ss_pred             eeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEE--ecCCCEEE-EEcCCeEEEE
Q 022303          103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDF--DFDESKIV-GLIGTRICIW  177 (299)
Q Consensus       103 ~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~-~~~d~~i~v~  177 (299)
                      .....+.+|.+.|.++.| +++ +|++++.||.|++||+.+++.+........+..++|  ++++++++ ++.|+.|++|
T Consensus        77 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw  156 (368)
T 3mmy_A           77 TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW  156 (368)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred             eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEE
Confidence            234667899999999999 565 999999999999999999998886666666667999  88888888 9999999999


Q ss_pred             ecCCceee--eeccC----------------------------------------CccceeeeeccCCCe----EEEecC
Q 022303          178 RRNGLRSV--FPSRE----------------------------------------GTFMKGLCMRYFDPE----AVVGCE  211 (299)
Q Consensus       178 d~~~~~~~--~~~~~----------------------------------------~~~~~~~~~~~~~~~----l~s~~~  211 (299)
                      |+++.+..  +..+.                                        .....++++.+....    +++++.
T Consensus       157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (368)
T 3mmy_A          157 DTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI  236 (368)
T ss_dssp             CSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred             ECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence            99875421  11111                                        011123334444333    899999


Q ss_pred             CCcEEEEEcCCc---ceeeeccccCC------------ceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCC
Q 022303          212 DGTARVFDMYSR---KCSQIIRMHCA------------PVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDC  275 (299)
Q Consensus       212 d~~i~iwd~~~~---~~~~~~~~~~~------------~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  275 (299)
                      |+.|++||++..   +.+..+..|..            +|++++|+|+ ++|++++.||.|++||+++++++..+..|..
T Consensus       237 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  316 (368)
T 3mmy_A          237 EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ  316 (368)
T ss_dssp             TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS
T ss_pred             CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC
Confidence            999999999976   45566666665            7999999999 8999999999999999999999999998887


Q ss_pred             CCcEEEEEccCCCCeEEeeecc
Q 022303          276 TGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       276 ~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                        +|++++|+|+|++|++|+..
T Consensus       317 --~v~~~~~s~~g~~l~~~s~d  336 (368)
T 3mmy_A          317 --PISACCFNHNGNIFAYASSY  336 (368)
T ss_dssp             --CEEEEEECTTSSCEEEEECC
T ss_pred             --CceEEEECCCCCeEEEEecc
Confidence              99999999999999999854

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.97  E-value=7.3e-29  Score=205.09  Aligned_cols=189  Identities=15%  Similarity=0.129  Sum_probs=163.5

Q ss_pred             eEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCC-----ceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEG-----YKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRI  174 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i  174 (299)
                      ..++.+|.+.|++++| +++  +|++|+.|++|++|++..     +.++..+.+|...+. ++|+|++++++ ++.|++|
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v   89 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL   89 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence            4577999999999999 433  999999999999999864     345678888876665 99999999999 9999999


Q ss_pred             EEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-------C
Q 022303          175 CIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-------Q  245 (299)
Q Consensus       175 ~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-------~  245 (299)
                      ++||+.+++  ..+..|.+.+. .+++++++..+++|+.|+.|++||++ ++.+..+.+|...|.++.+.|.       .
T Consensus        90 ~~wd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  167 (319)
T 3frx_A           90 RLWDVATGETYQRFVGHKSDVM-SVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSV  167 (319)
T ss_dssp             EEEETTTTEEEEEEECCSSCEE-EEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CC
T ss_pred             EEEECCCCCeeEEEccCCCcEE-EEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence            999999876  34556666554 45888999999999999999999997 5667777899999999999984       3


Q ss_pred             eEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          246 LIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       246 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      .+++++.|+.|++||+++++....+.+|..  .|.+++|+|+|++|++|+.-
T Consensus       168 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~sp~g~~l~s~~~d  217 (319)
T 3frx_A          168 TIISAGNDKMVKAWNLNQFQIEADFIGHNS--NINTLTASPDGTLIASAGKD  217 (319)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCCS--CEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEeCCCEEEEEECCcchhheeecCCCC--cEEEEEEcCCCCEEEEEeCC
Confidence            899999999999999999999999999988  99999999999999999854

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=3.4e-31  Score=221.26  Aligned_cols=253  Identities=14%  Similarity=0.095  Sum_probs=191.1

Q ss_pred             CCCCCCCCCCcchhccCcHHHH-------HHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhh
Q 022303           11 PPPKKRSSKPRATIESLNGDII-------CMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMR   83 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~   83 (299)
                      +.+....++.+.++++|+....       .....+.+|.+.|.+++|+|++.++++                ...|++++
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s----------------~s~D~~v~  101 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS----------------SSWDKTLR  101 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE----------------EETTSEEE
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE----------------EcCCCcEE
Confidence            4556677778899999987532       233456799999999999999998887                33678888


Q ss_pred             hhhhhhhhccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEec---CCC-ceeEE
Q 022303           84 LHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS---LPN-AASLV  157 (299)
Q Consensus        84 ~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~-~~~~~  157 (299)
                      +|.  +...          ..+..+.+|...|.++.| +++ +|++++.|++|++||+.... .....   .|. .+..+
T Consensus       102 lwd--~~~~----------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~  168 (343)
T 2xzm_R          102 LWD--LRTG----------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCV  168 (343)
T ss_dssp             EEE--TTSS----------CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEEE
T ss_pred             EEE--CCCC----------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeeee
Confidence            983  2221          234567899999999999 666 99999999999999998433 33332   344 34559


Q ss_pred             EEecCC----------CEEE-EEcCCeEEEEecCCce-eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc-c
Q 022303          158 DFDFDE----------SKIV-GLIGTRICIWRRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-K  224 (299)
Q Consensus       158 ~~~~~~----------~~l~-~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~  224 (299)
                      +|+|++          .+++ ++.|+.|++||..... ..+..|...+. .+++++++.+|++|+.|+.|++||+.+. .
T Consensus       169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~-~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~  247 (343)
T 2xzm_R          169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVN-HLSISPNGKYIATGGKDKKLLIWDILNLTY  247 (343)
T ss_dssp             EECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEE-EEEECTTSSEEEEEETTCEEEEEESSCCSS
T ss_pred             eeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccce-EEEECCCCCEEEEEcCCCeEEEEECCCCcc
Confidence            999987          5777 9999999999965432 34555665544 5689999999999999999999999543 3


Q ss_pred             eeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEE--Eee-----------ccCCCCcEEEEEccCCCCe
Q 022303          225 CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVA--TLR-----------STDCTGHIICLMYPQFLHM  290 (299)
Q Consensus       225 ~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~--~~~-----------~~~~~~~i~~~~~s~~g~~  290 (299)
                      ....+ .+...|.+++|+|+ .+++ ++.|+.|++||+.+++...  .+.           +|..  .|.+++|+|+|++
T Consensus       248 ~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~  323 (343)
T 2xzm_R          248 PQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP--QCTSLAWNALGKK  323 (343)
T ss_dssp             CSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCC--CEEEEEECSSSCC
T ss_pred             cceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCC--ceEEEEECCCCCe
Confidence            33444 45667999999999 6665 5568889999998876543  443           3444  7999999999999


Q ss_pred             EEeeecc
Q 022303          291 LFFLCFL  297 (299)
Q Consensus       291 l~s~s~~  297 (299)
                      |++|+.-
T Consensus       324 l~sg~~D  330 (343)
T 2xzm_R          324 LFAGFTD  330 (343)
T ss_dssp             EEEEETT
T ss_pred             EEEecCC
Confidence            9999854

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=6.8e-30  Score=232.41  Aligned_cols=233  Identities=20%  Similarity=0.239  Sum_probs=188.0

Q ss_pred             ccCccchhhHHHhhhhH-HHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCee
Q 022303           38 SLGFFDLVRCSAVCKSW-NAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVD  116 (299)
Q Consensus        38 ~~~h~~~v~~~~~~~~~-~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~  116 (299)
                      +.+|.+.|+|++++++. +.|++                ...|+++++|.  +......     -....+.+.+|...|.
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s----------------~s~D~~i~~W~--~~~~~~~-----~~~~~~~~~~h~~~v~  434 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVS----------------ASRDKSIILWK--LTKDDKA-----YGVAQRRLTGHSHFVE  434 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEE----------------EETTSEEEEEE--CCCSTTC-----SCEEEEEEECCSSCEE
T ss_pred             cccCCceeEEEEecCCCCCEEEE----------------EeCCCcEEEEE--ccCCCcc-----cccccceecCCCCcEE
Confidence            44899999999999875 56665                33678888883  2221110     1123456789999999


Q ss_pred             EEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEecCCceee--eeccC
Q 022303          117 QCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWRRNGLRSV--FPSRE  190 (299)
Q Consensus       117 ~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~--~~~~~  190 (299)
                      ++.| +++ +|++|+.||+|++||+.+++.+..+..|...+ .++|+|+++.|+ ++.|++|++||.......  .....
T Consensus       435 ~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  514 (694)
T 3dm0_A          435 DVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGE  514 (694)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence            9999 566 99999999999999999999999998886655 499999999999 999999999998765322  11112


Q ss_pred             Ccc--ceeeeeccCC--CeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc
Q 022303          191 GTF--MKGLCMRYFD--PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ  265 (299)
Q Consensus       191 ~~~--~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~  265 (299)
                      ++.  ...+++++++  ..+++++.|+.|++||+++++....+.+|...|++++|+|+ ++|++|+.||.|++||+++++
T Consensus       515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~  594 (694)
T 3dm0_A          515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK  594 (694)
T ss_dssp             SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred             CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            222  2245777765  45999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             eEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          266 RVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       266 ~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ++..+..+.   .|.+++|+|++.+|++++.
T Consensus       595 ~~~~~~~~~---~v~~~~~sp~~~~l~~~~~  622 (694)
T 3dm0_A          595 KLYSLEANS---VIHALCFSPNRYWLCAATE  622 (694)
T ss_dssp             EEECCBCSS---CEEEEEECSSSSEEEEEET
T ss_pred             eEEEecCCC---cEEEEEEcCCCcEEEEEcC
Confidence            888876554   7999999999999988764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=1.7e-30  Score=215.55  Aligned_cols=271  Identities=9%  Similarity=0.029  Sum_probs=202.5

Q ss_pred             hhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhh----hhhHHHHHHhhhcCCCCC-CCchhhhhhhhhhhccccce
Q 022303           23 TIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIIN----RCKLLQLLYCKLHGFSNT-SGSSMRLHLEELAMKHHRFA   97 (299)
Q Consensus        23 ~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~----~~~~w~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~   97 (299)
                      .+..|............+|.+.|.+++|+|+++++++    .+.+|+............ ........+.++.++|+++.
T Consensus        32 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  111 (337)
T 1gxr_A           32 ALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT  111 (337)
T ss_dssp             SSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSE
T ss_pred             cEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCE
Confidence            3344443333344456689999999999999999987    456675522211100000 00001112335566666655


Q ss_pred             eecCcee---------------eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEE
Q 022303           98 LEEGRID---------------IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDF  159 (299)
Q Consensus        98 l~~g~~~---------------~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~  159 (299)
                      +..+..+               ...+.+|...|.++.| +++ ++++++.||.|++||+.+++.+..+..|...+ .++|
T Consensus       112 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~  191 (337)
T 1gxr_A          112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI  191 (337)
T ss_dssp             EEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             EEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEE
Confidence            5543321               3455788999999999 555 99999999999999999999999998776555 4999


Q ss_pred             ecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeE
Q 022303          160 DFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTS  238 (299)
Q Consensus       160 ~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~  238 (299)
                      +|+++.++ ++.|+.|++||+++.+.............+++++++..+++++.++.|++||+++++.. .+..|...|.+
T Consensus       192 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~  270 (337)
T 1gxr_A          192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLS  270 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEE
T ss_pred             CCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeE
Confidence            99999999 99999999999998764333222222335689999999999999999999999987764 45688999999


Q ss_pred             EEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          239 LSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       239 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ++|+|+ ++|++++.||.|++||+.+++.+.... +..  .|.+++|+|++++|++++.-
T Consensus       271 ~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-~~~--~v~~~~~s~~~~~l~~~~~d  327 (337)
T 1gxr_A          271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESS--SVLSCDISVDDKYIVTGSGD  327 (337)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS--CEEEEEECTTSCEEEEEETT
T ss_pred             EEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-CCC--cEEEEEECCCCCEEEEecCC
Confidence            999999 999999999999999999998875554 444  89999999999999998754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=4e-29  Score=211.59  Aligned_cols=191  Identities=16%  Similarity=0.139  Sum_probs=162.9

Q ss_pred             eeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEec
Q 022303          104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRR  179 (299)
Q Consensus       104 ~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~  179 (299)
                      ..+++++|.+.|+++.| |++ +|++|+.||+|++||..+++....+..|...+. ++|+|++++++ ++.|+.+++||+
T Consensus        58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~  137 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL  137 (380)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred             EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence            36788999999999999 666 999999999999999999999999998866554 99999999999 999999999998


Q ss_pred             CCce---------eeeeccCCccceeeeeccCCC-eEEEecCCCcEEEEEcCCcceeeec-----cccCCceeEEEeCC-
Q 022303          180 NGLR---------SVFPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQII-----RMHCAPVTSLSLSE-  243 (299)
Q Consensus       180 ~~~~---------~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~i~~~~~~~-  243 (299)
                      .+..         ..+..|.+... .+.+.+.+. .+++|+.|+.|++||+++++.+..+     .+|...|.++++++ 
T Consensus       138 ~~~~~~~~~~~~~~~~~gh~~~v~-~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  216 (380)
T 3iz6_a          138 SSQADRDGNMPVSRVLTGHKGYAS-SCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL  216 (380)
T ss_dssp             CCCSSCCCSSTTCCBCCCCSSCCC-CCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS
T ss_pred             CCCccccCCccceeeccCCCcceE-EEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC
Confidence            7532         23445555444 235666544 5999999999999999999888766     47888999999986 


Q ss_pred             C-CeEEEEeCCCcEEEEeCC-CCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          244 D-QLIISGSSLGSIAISGLS-SDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       244 ~-~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      + .+|++|+.|++|++||++ .++.+..+.+|..  .|++++|+|+|++|++||.-
T Consensus       217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~--~v~~v~~~p~~~~l~s~s~D  270 (380)
T 3iz6_a          217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG--DINSVKFFPDGQRFGTGSDD  270 (380)
T ss_dssp             SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSS--CCCEEEECTTSSEEEEECSS
T ss_pred             CCCEEEEEECCCeEEEEECCCCCcceEEECCcCC--CeEEEEEecCCCeEEEEcCC
Confidence            5 899999999999999998 4578889999988  89999999999999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=6.2e-30  Score=227.68  Aligned_cols=245  Identities=17%  Similarity=0.198  Sum_probs=201.1

Q ss_pred             CCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccc
Q 022303           17 SSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRF   96 (299)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (299)
                      .+..+..++.|+.+. ..+..+.+|.+.|.+++++|+++.+++                ...|+.+++|..         
T Consensus       279 ~~~~d~~i~~w~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~t----------------~~~d~~i~~w~~---------  332 (577)
T 2ymu_A          279 SASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIAS----------------ASDDKTVKLWNR---------  332 (577)
T ss_dssp             EEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEE----------------EETTSCEEEEET---------
T ss_pred             EEeCCCEEEEEeCCC-cEEEEEecCCCCeEEEEECCCCCEEEE----------------EeCCCeEEEEeC---------
Confidence            334566788888542 334456689999999999999998886                235677778732         


Q ss_pred             eeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-EEcCC
Q 022303           97 ALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GLIGT  172 (299)
Q Consensus        97 ~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~  172 (299)
                          ....+..+.+|...|.++.| +++ +|++++.||.|++||. +++.+..+..|...+ .++|+|++++|+ ++.|+
T Consensus       333 ----~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~  407 (577)
T 2ymu_A          333 ----NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK  407 (577)
T ss_dssp             ----TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             ----CCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCC
Confidence                12234556899999999999 666 9999999999999995 577888888776555 499999999999 99999


Q ss_pred             eEEEEecCCce-eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEE
Q 022303          173 RICIWRRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG  250 (299)
Q Consensus       173 ~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~  250 (299)
                      .|++||..... ..+..+...+. .++++|++..+++++.|+.|++||.. ++.+..+..|...|.+++|+|+ ++|+++
T Consensus       408 ~v~~~~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~  485 (577)
T 2ymu_A          408 TVKLWNRNGQLLQTLTGHSSSVW-GVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASA  485 (577)
T ss_dssp             EEEEECTTCCEEEEEECCSSCEE-EEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEE
T ss_pred             EEEEEeCCCCEEEEecCCCCCeE-EEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence            99999976543 34455555544 46899999999999999999999964 6778888899999999999999 999999


Q ss_pred             eCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          251 SSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       251 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +.|+.|++||. +++++..+.+|..  .|++++|+|+|++|++++..
T Consensus       486 ~~d~~i~iw~~-~~~~~~~~~~h~~--~v~~l~~s~dg~~l~s~~~d  529 (577)
T 2ymu_A          486 SDDKTVKLWNR-NGQLLQTLTGHSS--SVRGVAFSPDGQTIASASDD  529 (577)
T ss_dssp             ETTSEEEEEET-TSCEEEEEECCSS--CEEEEEECTTSSCEEEEETT
T ss_pred             eCCCEEEEEcC-CCCEEEEEeCCCC--CEEEEEEcCCCCEEEEEECc
Confidence            99999999995 6899999999988  99999999999999999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.97  E-value=9.4e-29  Score=221.71  Aligned_cols=207  Identities=13%  Similarity=0.135  Sum_probs=171.5

Q ss_pred             hhhhccccceeecCc------------eeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCce--eEEEecCC
Q 022303           88 ELAMKHHRFALEEGR------------IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK--CVEEYSLP  151 (299)
Q Consensus        88 ~~~~~~~~~~l~~g~------------~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~  151 (299)
                      .+.++|+++.++.+.            ....++.+|.+.|++++| |++ +|++|+.||+|+|||+.+++  ....+..|
T Consensus        23 ~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~  102 (611)
T 1nr0_A           23 VLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF  102 (611)
T ss_dssp             CCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS
T ss_pred             EEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeeccc
Confidence            556677776655432            125677899999999999 666 99999999999999997543  44566666


Q ss_pred             Ccee-EEEEecCCCEEE-EEcC----CeEEEEecCCceeeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcc
Q 022303          152 NAAS-LVDFDFDESKIV-GLIG----TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK  224 (299)
Q Consensus       152 ~~~~-~~~~~~~~~~l~-~~~d----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~  224 (299)
                      ...+ .++|+|+++.|+ ++.+    +.|++||.......+..|...+. .++|+|+++. +++|+.|+.|++||..+++
T Consensus       103 ~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~-~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~  181 (611)
T 1nr0_A          103 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN-SVDFKPSRPFRIISGSDDNTVAIFEGPPFK  181 (611)
T ss_dssp             SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEE-EEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred             CCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCce-EEEECCCCCeEEEEEeCCCeEEEEECCCCe
Confidence            5544 599999999998 5544    48999997665566666766555 4588998875 9999999999999999999


Q ss_pred             eeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEee-------ccCCCCcEEEEEccCCCCeEEeeec
Q 022303          225 CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLR-------STDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       225 ~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      .+..+.+|...|.+++|+|+ ++|++|+.|++|++||+.+++++..+.       +|..  .|.+++|+|+|++|++++.
T Consensus       182 ~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~--~V~~v~~spdg~~l~s~s~  259 (611)
T 1nr0_A          182 FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG--SVFGLTWSPDGTKIASASA  259 (611)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS--CEEEEEECTTSSEEEEEET
T ss_pred             EeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCC--CEEEEEECCCCCEEEEEeC
Confidence            98999999999999999999 999999999999999999999988884       5766  8999999999999999986


Q ss_pred             c
Q 022303          297 L  297 (299)
Q Consensus       297 ~  297 (299)
                      -
T Consensus       260 D  260 (611)
T 1nr0_A          260 D  260 (611)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=6.9e-29  Score=206.33  Aligned_cols=232  Identities=20%  Similarity=0.196  Sum_probs=188.0

Q ss_pred             hccCccchhhHHHhhhh-HHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCe
Q 022303           37 SSLGFFDLVRCSAVCKS-WNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGV  115 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~-~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i  115 (299)
                      ++.+|.+.|++++|+|+ +++|++                ...|+++++|.  +.....     ......+++++|...|
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S----------------~s~D~~i~vWd--~~~~~~-----~~~~~~~~l~~h~~~V   89 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILS----------------ASRDKTIIMWK--LTRDET-----NYGIPQRALRGHSHFV   89 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEE----------------EETTSCEEEEE--ECCSSS-----CSEEEEEEECCCSSCE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEE----------------EcCCCeEEEEE--CCCCCc-----ccceeeEEEeCCCCCE
Confidence            46699999999999998 577876                33688899993  222111     1122366789999999


Q ss_pred             eEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeee---c
Q 022303          116 DQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFP---S  188 (299)
Q Consensus       116 ~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~---~  188 (299)
                      .++.| +++ +|++++.|+.|++|+............+..... ..+++++..++ ++.|+.+++||.........   .
T Consensus        90 ~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~  169 (340)
T 4aow_A           90 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES  169 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred             EEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEecc
Confidence            99999 666 999999999999999999888877776655544 88899999988 99999999999987653332   2


Q ss_pred             cCCccceeeeeccCCC--eEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc
Q 022303          189 REGTFMKGLCMRYFDP--EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ  265 (299)
Q Consensus       189 ~~~~~~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~  265 (299)
                      +..... .+++.+.+.  .+++++.|+.|++||+++++.+..+.+|..+|++++|+|+ ++|++|+.|+.|++||+++.+
T Consensus       170 ~~~~v~-~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~  248 (340)
T 4aow_A          170 HSEWVS-CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK  248 (340)
T ss_dssp             CSSCEE-EEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred             ccCccc-ceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc
Confidence            333322 346666543  4789999999999999999999999999999999999999 999999999999999999999


Q ss_pred             eEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          266 RVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       266 ~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ++..+..+.   .|.+++|+|++.+++++.
T Consensus       249 ~~~~~~~~~---~v~~~~~~~~~~~~~~~~  275 (340)
T 4aow_A          249 HLYTLDGGD---IINALCFSPNRYWLCAAT  275 (340)
T ss_dssp             EEEEEECSS---CEEEEEECSSSSEEEEEE
T ss_pred             eeeeecCCc---eEEeeecCCCCceeeccC
Confidence            999888765   799999999988776654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.1e-28  Score=201.54  Aligned_cols=191  Identities=15%  Similarity=0.170  Sum_probs=155.7

Q ss_pred             eeEEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCc--eeEEEe-cC-CCc-eeEEEEecCCCEEE-EEcCCeEEEE
Q 022303          104 DIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGY--KCVEEY-SL-PNA-ASLVDFDFDESKIV-GLIGTRICIW  177 (299)
Q Consensus       104 ~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~-~~-~~~-~~~~~~~~~~~~l~-~~~d~~i~v~  177 (299)
                      .++++++|.++|+++.|.+++|++|+.|++|++||+.++  +....+ .. |.. +..++|+|++++|+ ++.|+.|++|
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw   85 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW   85 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            367789999999999996569999999999999999875  455555 33 554 45599999999999 9999999999


Q ss_pred             ecCCc---------eeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc----ceeeeccccCCceeEEEeCCC
Q 022303          178 RRNGL---------RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR----KCSQIIRMHCAPVTSLSLSED  244 (299)
Q Consensus       178 d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~  244 (299)
                      |+...         ...+..|.+.+. .++|+|++.+|++|+.|+.|++||++..    +.+..+..|...|.+++|+|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~  164 (330)
T 2hes_X           86 AKEESADRTFEMDLLAIIEGHENEVK-GVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS  164 (330)
T ss_dssp             EC-------CCCEEEEEEC----CEE-EEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSS
T ss_pred             EcccCcCccccceeEEEEcCCCCcEE-EEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCC
Confidence            98532         123445555544 4689999999999999999999999532    456777889999999999999


Q ss_pred             -CeEEEEeCCCcEEEEeCCCC--ceEEEeeccCCCCcEEEEEccCC--CCeEEeeecc
Q 022303          245 -QLIISGSSLGSIAISGLSSD--QRVATLRSTDCTGHIICLMYPQF--LHMLFFLCFL  297 (299)
Q Consensus       245 -~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~i~~~~~s~~--g~~l~s~s~~  297 (299)
                       .+|++|+.|++|++||..++  +++..+.+|..  .|.+++|+|+  +.+|++|+.-
T Consensus       165 ~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~D  220 (330)
T 2hes_X          165 EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG--TVWSSDFDKTEGVFRLCSGSDD  220 (330)
T ss_dssp             SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS--CEEEEEECCSSSSCEEEEEETT
T ss_pred             CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC--cEEEEEecCCCCeeEEEEEeCC
Confidence             99999999999999998776  67889999988  9999999998  7789998753

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-30  Score=213.12  Aligned_cols=251  Identities=13%  Similarity=0.095  Sum_probs=202.0

Q ss_pred             CCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcc
Q 022303           14 KKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKH   93 (299)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (299)
                      ....+..+..+++|+.+.......+..|.+.|.+++|+|+++.+++                ...|+.+++|  ++....
T Consensus        31 ~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----------------~~~dg~i~~~--~~~~~~   92 (313)
T 3odt_A           31 KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLF----------------GGKDTMINGV--PLFATS   92 (313)
T ss_dssp             EEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEE----------------EETTSCEEEE--ETTCCT
T ss_pred             EEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEE----------------ecCCCeEEEE--EeeecC
Confidence            3444556778999998776666677789999999999999999886                2245556666  222111


Q ss_pred             ccceeecCceeeEEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEec-CCCEEE-EEc
Q 022303           94 HRFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDF-DESKIV-GLI  170 (299)
Q Consensus        94 ~~~~l~~g~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~-~~~~l~-~~~  170 (299)
                             ....+..+.+|...|.++.|.++++++++.||.|++||  .++.+..+..|...+ .+++.+ +++.++ ++.
T Consensus        93 -------~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  163 (313)
T 3odt_A           93 -------GEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASA  163 (313)
T ss_dssp             -------TSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred             -------CCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence                   11224556899999999999777999999999999999  677788888776555 488887 888888 999


Q ss_pred             CCeEEEEecCCceeeeec-cCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEE
Q 022303          171 GTRICIWRRNGLRSVFPS-REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIIS  249 (299)
Q Consensus       171 d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~  249 (299)
                      |+.|++||.......+.. +... ...+++++++. +++++.|+.|++||+++++.+..+..|...|.+++|+|+..+++
T Consensus       164 d~~i~i~d~~~~~~~~~~~~~~~-i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~  241 (313)
T 3odt_A          164 DKTIKLWQNDKVIKTFSGIHNDV-VRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVS  241 (313)
T ss_dssp             TSCEEEEETTEEEEEECSSCSSC-EEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEE
T ss_pred             CCCEEEEecCceEEEEeccCccc-EEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEE
Confidence            999999996655555555 4333 33568888877 99999999999999999999999999999999999999956999


Q ss_pred             EeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          250 GSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       250 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ++.||.|++||+++++++..+..+..  +|.+++|+|++++++ ++.
T Consensus       242 ~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~-~~~  285 (313)
T 3odt_A          242 CGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGDIIV-GSS  285 (313)
T ss_dssp             EETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSCEEE-EET
T ss_pred             EecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCCEEE-EeC
Confidence            99999999999999999999999887  899999999999554 543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.9e-29  Score=211.74  Aligned_cols=231  Identities=14%  Similarity=0.156  Sum_probs=192.4

Q ss_pred             HhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccC
Q 022303           35 IFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVG  114 (299)
Q Consensus        35 i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~  114 (299)
                      ...+.+|.+.|++++|+|+++++++                ...|+.+++|.  +..          ...+..+.+|...
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~----------------~~~dg~i~vwd--~~~----------~~~~~~~~~h~~~   76 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFS----------------CSKDSSASVWY--SLN----------GERLGTLDGHTGT   76 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEE----------------EESSSCEEEEE--TTT----------CCEEEEECCCSSC
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEE----------------EeCCCEEEEEe--CCC----------chhhhhhhhcCCc
Confidence            4457799999999999999999887                22566777773  221          2234566899999


Q ss_pred             eeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcC-----CeEEEEecCCcee--
Q 022303          115 VDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG-----TRICIWRRNGLRS--  184 (299)
Q Consensus       115 i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d-----~~i~v~d~~~~~~--  184 (299)
                      |.++.| +++ +|++++.||.|++||+.+++.+..+.....+..++|+|+++.++ ++.+     +.|++||+.....  
T Consensus        77 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~  156 (369)
T 3zwl_B           77 IWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATH  156 (369)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccce
Confidence            999999 555 99999999999999999999999998777777799999999999 8887     9999999875431  


Q ss_pred             -----------eeeccCC-ccceeeeeccCCCeEEEecCCCcEEEEEcCC-cceeeeccccCCceeEEEeCCC-CeEEEE
Q 022303          185 -----------VFPSREG-TFMKGLCMRYFDPEAVVGCEDGTARVFDMYS-RKCSQIIRMHCAPVTSLSLSED-QLIISG  250 (299)
Q Consensus       185 -----------~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~-~~l~~~  250 (299)
                                 .+..+.+ .....+++++++..+++++.|+.|++||+++ ++.+..+..|...|.+++|+|+ ++|+++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  236 (369)
T 3zwl_B          157 ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS  236 (369)
T ss_dssp             CEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe
Confidence                       1112222 1233568899999999999999999999998 7788888889999999999999 999999


Q ss_pred             eCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          251 SSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       251 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +.|+.|++||+++++.+..+... .  .+.+++|+|+++++++++.
T Consensus       237 ~~d~~i~v~d~~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~  279 (369)
T 3zwl_B          237 SRDTNSFLVDVSTLQVLKKYETD-C--PLNTAVITPLKEFIILGGG  279 (369)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECS-S--CEEEEEECSSSSEEEEEEC
T ss_pred             cCCceEEEEECCCCceeeeecCC-C--CceeEEecCCCceEEEeec
Confidence            99999999999999999888843 3  8999999999999999874

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.6e-29  Score=211.81  Aligned_cols=235  Identities=11%  Similarity=0.056  Sum_probs=183.2

Q ss_pred             HHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeecccc
Q 022303           34 MIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSV  113 (299)
Q Consensus        34 ~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~  113 (299)
                      .+..+.+|.+.|++++|+|+++++++                ...|+.+++|..  ..        .....+..+.+|..
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~----------------~~~dg~i~iw~~--~~--------~~~~~~~~~~~h~~   56 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLAT----------------CSSDKTIKIFEV--EG--------ETHKLIDTLTGHEG   56 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEE----------------EETTSCEEEEEE--ET--------TEEEEEEEECCCSS
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEE----------------EECCCcEEEEec--CC--------CcceeeeEecCCCC
Confidence            34556789999999999999999987                225677888832  10        01123566789999


Q ss_pred             CeeEEEe-cC--C-EEEEEeCCCcEEEEecCCce--eEEEecCCCce-eEEEEecC--CCEEE-EEcCCeEEEEecCCce
Q 022303          114 GVDQCRM-KR--G-LILTGVGDKVMRLWSLEGYK--CVEEYSLPNAA-SLVDFDFD--ESKIV-GLIGTRICIWRRNGLR  183 (299)
Q Consensus       114 ~i~~~~~-~~--~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~-~~~~~~~~--~~~l~-~~~d~~i~v~d~~~~~  183 (299)
                      +|+++.| ++  + +|++++.||.|++||+.+++  .+..+..|... ..++|+|+  +..++ ++.|+.|++||+++..
T Consensus        57 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  136 (379)
T 3jrp_A           57 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG  136 (379)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred             cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC
Confidence            9999999 44  4 99999999999999999987  66677766544 45999999  88888 9999999999998763


Q ss_pred             ----eeeeccCCccceeeeecc-------------CCCeEEEecCCCcEEEEEcCCcc----eeeeccccCCceeEEEeC
Q 022303          184 ----SVFPSREGTFMKGLCMRY-------------FDPEAVVGCEDGTARVFDMYSRK----CSQIIRMHCAPVTSLSLS  242 (299)
Q Consensus       184 ----~~~~~~~~~~~~~~~~~~-------------~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~i~~~~~~  242 (299)
                          ..+..+...+. .+++++             ++..+++++.|+.|++||++++.    ....+..|...|.+++|+
T Consensus       137 ~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~s  215 (379)
T 3jrp_A          137 TTSPIIIDAHAIGVN-SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS  215 (379)
T ss_dssp             CCCEEEEECCTTCEE-EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred             ceeeEEecCCCCceE-EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEEC
Confidence                23334444433 457888             57789999999999999998764    445667899999999999


Q ss_pred             CC----CeEEEEeCCCcEEEEeCCCCc---eEEEeec--cCCCCcEEEEEccCCCCeEEeeecc
Q 022303          243 ED----QLIISGSSLGSIAISGLSSDQ---RVATLRS--TDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       243 ~~----~~l~~~~~dg~i~iwd~~~~~---~~~~~~~--~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      |+    .+|++++.||.|++||+++++   ....+..  +..  .|++++|+|+|++|++++.-
T Consensus       216 p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~d  277 (379)
T 3jrp_A          216 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD--VLWRASWSLSGNVLALSGGD  277 (379)
T ss_dssp             CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS--CEEEEEECSSSCCEEEEESS
T ss_pred             CCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCC--cEEEEEEcCCCCEEEEecCC
Confidence            86    589999999999999998864   2222222  444  89999999999999998754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=5.4e-29  Score=209.52  Aligned_cols=227  Identities=16%  Similarity=0.117  Sum_probs=185.7

Q ss_pred             CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEE
Q 022303           40 GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCR  119 (299)
Q Consensus        40 ~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~  119 (299)
                      .|.+.|.+++|+|+++++++                ...++.+++|..  ....        ...+..+.+|...|.++.
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~----------------~~~d~~v~i~~~--~~~~--------~~~~~~~~~h~~~v~~~~   59 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAI----------------CPNNHEVHIYEK--SGNK--------WVQVHELKEHNGQVTGVD   59 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEE----------------ECSSSEEEEEEE--ETTE--------EEEEEEEECCSSCEEEEE
T ss_pred             ccCCCeEEEEECCCCCEEEE----------------EeCCCEEEEEeC--CCCc--------EEeeeeecCCCCcccEEE
Confidence            48899999999999999886                235667777732  1111        014667789999999999


Q ss_pred             e-cCC-EEEEEeCCCcEEEEecCCceeEEEe--cCCC-ceeEEEEecCCCEEE-EEcCCeEEEEecCCce-----eee-e
Q 022303          120 M-KRG-LILTGVGDKVMRLWSLEGYKCVEEY--SLPN-AASLVDFDFDESKIV-GLIGTRICIWRRNGLR-----SVF-P  187 (299)
Q Consensus       120 ~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~-~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~-----~~~-~  187 (299)
                      | +++ +|++++.||.|++||+.+++....+  ..+. .+..++|+|++++++ ++.|+.|++||++...     ..+ .
T Consensus        60 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~  139 (372)
T 1k8k_C           60 WAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK  139 (372)
T ss_dssp             EETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT
T ss_pred             EeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeec
Confidence            9 555 9999999999999999988765544  3344 455599999999999 9999999999998764     112 2


Q ss_pred             ccCCccceeeeeccCCCeEEEecCCCcEEEEEc------------------CCcceeeeccccCCceeEEEeCCC-CeEE
Q 022303          188 SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDM------------------YSRKCSQIIRMHCAPVTSLSLSED-QLII  248 (299)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~------------------~~~~~~~~~~~~~~~i~~~~~~~~-~~l~  248 (299)
                      .+...+ ..+++++++..+++++.|+.|++||+                  ..++.+..+..|...|.+++|+|+ ++|+
T Consensus       140 ~~~~~i-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  218 (372)
T 1k8k_C          140 PIRSTV-LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA  218 (372)
T ss_dssp             TCCSCE-EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred             ccCCCe-eEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence            233333 35688898999999999999999995                  367788888889999999999999 8999


Q ss_pred             EEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          249 SGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       249 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      +++.|+.|++||+++++++..+..+..  +|.+++|+|++++|++|+
T Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~  263 (372)
T 1k8k_C          219 WVSHDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAGH  263 (372)
T ss_dssp             EEETTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEET
T ss_pred             EEeCCCEEEEEECCCCceeEEEccCCC--CeEEEEEecCCCEEEEEe
Confidence            999999999999999999999998887  899999999999998874

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=1.3e-29  Score=217.30  Aligned_cols=246  Identities=13%  Similarity=0.131  Sum_probs=198.0

Q ss_pred             CcchhccCcHHHHHHH--hhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccce
Q 022303           20 PRATIESLNGDIICMI--FSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFA   97 (299)
Q Consensus        20 ~~~~~~~~~~~~~~~i--~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (299)
                      .+.++++|+.+++..+  +.+.+|.+.|+|++|+|+++++++                ...|+.+++|..  ..      
T Consensus       123 ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~las----------------gs~Dg~v~iWd~--~~------  178 (420)
T 4gga_A          123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV----------------GTSSAEVQLWDV--QQ------  178 (420)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEE----------------EETTSCEEEEET--TT------
T ss_pred             eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEE----------------EECCCeEEEEEc--CC------
Confidence            3567899999887643  344578899999999999999987                336788888832  22      


Q ss_pred             eecCceeeEEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCc-eeEEEecCCCceeE-EEEecCCCEEE-EEcCCeE
Q 022303           98 LEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGY-KCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRI  174 (299)
Q Consensus        98 l~~g~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i  174 (299)
                          ...++.+.+|...|.++.+.+.+|++|+.|+.+++||.... ..+..+..|...+. +.++|+++.++ ++.|+.+
T Consensus       179 ----~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v  254 (420)
T 4gga_A          179 ----QKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV  254 (420)
T ss_dssp             ----TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ----CcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccc
Confidence                23356678999999999998779999999999999998864 45667777766665 99999999999 9999999


Q ss_pred             EEEecCCce------eeeeccCCccceeeeeccCCCe-EE--EecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-
Q 022303          175 CIWRRNGLR------SVFPSREGTFMKGLCMRYFDPE-AV--VGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-  244 (299)
Q Consensus       175 ~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~-l~--s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-  244 (299)
                      ++|+..+.+      .....+.+.+. .+++++.+.. ++  +|+.|+.|++||+.+++....+.. ...+.++.|+|+ 
T Consensus       255 ~i~~~~~~~~~~~~~~~~~~~~~~V~-~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~~  332 (420)
T 4gga_A          255 NVWPSAPGEGGWVPLQTFTQHQGAVK-AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHY  332 (420)
T ss_dssp             EEEESSCCSSCSCCSEEECCCSSCEE-EEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC-SSCEEEEEEETTT
T ss_pred             eEEeeccccccceeeeeecccCCcee-eeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc-ccceeeeeecCCC
Confidence            999998654      22333444433 4577887766 33  356899999999999999888855 456889999998 


Q ss_pred             CeEEEEe--CCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          245 QLIISGS--SLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       245 ~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +.+++++  .|+.|+|||+++++++.++.+|..  .|++++|+|+|++|++||.-
T Consensus       333 ~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~--~V~~l~~spdg~~l~S~s~D  385 (420)
T 4gga_A          333 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAAD  385 (420)
T ss_dssp             TEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETT
T ss_pred             CeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecC
Confidence            7776654  799999999999999999999988  99999999999999999864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=4.7e-29  Score=207.35  Aligned_cols=233  Identities=14%  Similarity=0.057  Sum_probs=184.4

Q ss_pred             cCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEE
Q 022303           39 LGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQC  118 (299)
Q Consensus        39 ~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~  118 (299)
                      .+|.+.|++++|+|+++++++                ...|+.+++|..  ......      ......+.+|..+|.++
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~----------------~~~dg~i~iw~~--~~~~~~------~~~~~~~~~~~~~v~~~   63 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVAT----------------CSSDQHIKVFKL--DKDTSN------WELSDSWRAHDSSIVAI   63 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEE----------------EETTSEEEEEEE--CSSSCC------EEEEEEEECCSSCEEEE
T ss_pred             cccccceeEEEEcCCCCEEEE----------------eeCCCeEEEEEC--CCCCCc------ceecceeccCCCcEEEE
Confidence            489999999999999999987                235677888832  211100      02356678999999999


Q ss_pred             Ee-c--CC-EEEEEeCCCcEEEEecCCc---------eeEEEecCCCcee-EEEEecC--CCEEE-EEcCCeEEEEecCC
Q 022303          119 RM-K--RG-LILTGVGDKVMRLWSLEGY---------KCVEEYSLPNAAS-LVDFDFD--ESKIV-GLIGTRICIWRRNG  181 (299)
Q Consensus       119 ~~-~--~~-~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~-~~~~~~~--~~~l~-~~~d~~i~v~d~~~  181 (299)
                      .| +  ++ +|++|+.||.|++||+.++         +.+..+..|...+ .++|+|+  +++++ ++.|+.|++||+++
T Consensus        64 ~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  143 (351)
T 3f3f_A           64 DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE  143 (351)
T ss_dssp             EECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred             EEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence            99 4  35 9999999999999999887         5677777776555 4999999  89888 99999999999987


Q ss_pred             ceeee--e-------------ccCCccceeeeeccC---CCeEEEecCCCcEEEEEcCCcce--eeeccccCCceeEEEe
Q 022303          182 LRSVF--P-------------SREGTFMKGLCMRYF---DPEAVVGCEDGTARVFDMYSRKC--SQIIRMHCAPVTSLSL  241 (299)
Q Consensus       182 ~~~~~--~-------------~~~~~~~~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~i~~~~~  241 (299)
                      .....  .             .+... ...++++|.   +..+++++.++.+.+|+...++.  +..+..|...|.+++|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  222 (351)
T 3f3f_A          144 PSDLRSWTLTSEMKVLSIPPANHLQS-DFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISW  222 (351)
T ss_dssp             TTCTTCCEEEEEEESCSCCCSSCSCC-CEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEE
T ss_pred             hHHhccccccccccccccccCCcccc-eeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEE
Confidence            64211  1             12222 224577776   77799999999998888877765  6677789999999999


Q ss_pred             CCC-----CeEEEEeCCCcEEEEeCCCC----------------------------------------------ceEEEe
Q 022303          242 SED-----QLIISGSSLGSIAISGLSSD----------------------------------------------QRVATL  270 (299)
Q Consensus       242 ~~~-----~~l~~~~~dg~i~iwd~~~~----------------------------------------------~~~~~~  270 (299)
                      +|+     ++|++|+.||.|++||++++                                              +.+..+
T Consensus       223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (351)
T 3f3f_A          223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH  302 (351)
T ss_dssp             CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE
T ss_pred             CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE
Confidence            998     48999999999999999865                                              667778


Q ss_pred             eccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          271 RSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       271 ~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      .+|..  .|++++|+|++++|++|+.-+
T Consensus       303 ~~h~~--~v~~~~~s~~~~~l~s~~~dg  328 (351)
T 3f3f_A          303 DDHNG--EVWSVSWNLTGTILSSAGDDG  328 (351)
T ss_dssp             CTTSS--CEEEEEECSSSCCEEEEETTS
T ss_pred             ecccc--cEEEEEEcCCCCEEEEecCCC
Confidence            88887  899999999999999998643

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=7.5e-28  Score=197.00  Aligned_cols=189  Identities=17%  Similarity=0.226  Sum_probs=155.2

Q ss_pred             EEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCC--ceeEEEecCCCceeE-EEEecC--CCEEE-EEcCCeEEEE
Q 022303          106 DQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG--YKCVEEYSLPNAASL-VDFDFD--ESKIV-GLIGTRICIW  177 (299)
Q Consensus       106 ~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~-~~~~~~--~~~l~-~~~d~~i~v~  177 (299)
                      .++.+|.+.|++++| +++ +|++|+.|++|++||+.+  .+++.++.+|...+. ++|+++  +++|+ ++.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            356899999999999 566 999999999999999974  467788888876655 999763  78888 9999999999


Q ss_pred             ecCCce----eeeeccCCccceeeeeccC--CCeEEEecCCCcEEEEEcCCcce--eeeccccCCceeEEEeCCC-----
Q 022303          178 RRNGLR----SVFPSREGTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSRKC--SQIIRMHCAPVTSLSLSED-----  244 (299)
Q Consensus       178 d~~~~~----~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~-----  244 (299)
                      |++++.    ..+..+...+. .++|+|+  +..+++++.|+.|++||++++..  ...+..|...|.+++|+|+     
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred             EcCCCceEEEEEeecCCCcee-EEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence            998753    22334444433 4578886  67899999999999999987632  3456689999999999985     


Q ss_pred             ---------CeEEEEeCCCcEEEEeCCCCc----eEEEeeccCCCCcEEEEEccCCC---CeEEeeecc
Q 022303          245 ---------QLIISGSSLGSIAISGLSSDQ----RVATLRSTDCTGHIICLMYPQFL---HMLFFLCFL  297 (299)
Q Consensus       245 ---------~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~i~~~~~s~~g---~~l~s~s~~  297 (299)
                               ++|++|+.|++|++||+++++    +..++.+|..  .|.+++|+|++   .+|++||.-
T Consensus       162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~--~V~~v~~sp~~~~~~~las~s~D  228 (297)
T 2pm7_B          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD--WVRDVAWSPTVLLRSYMASVSQD  228 (297)
T ss_dssp             --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS--CEEEEEECCCCSSSEEEEEEETT
T ss_pred             ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC--ceEEEEECCCCCCceEEEEEECC
Confidence                     489999999999999998766    6678888888  99999999985   899999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-29  Score=216.37  Aligned_cols=252  Identities=15%  Similarity=0.103  Sum_probs=202.5

Q ss_pred             CCCCCCCcchhccCcH----HHHHH------HhhccC----------ccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcC
Q 022303           14 KKRSSKPRATIESLNG----DIICM------IFSSLG----------FFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHG   73 (299)
Q Consensus        14 ~~~~~~~~~~~~~~~~----~~~~~------i~~~~~----------h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~   73 (299)
                      ..+.+..+..+.+|+.    +....      ...+..          |.+.|.+++|+|+++++++              
T Consensus        60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--------------  125 (425)
T 1r5m_A           60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT--------------  125 (425)
T ss_dssp             EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE--------------
T ss_pred             EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE--------------
Confidence            3455566788999998    77763      333333          6889999999999998886              


Q ss_pred             CCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCC
Q 022303           74 FSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP  151 (299)
Q Consensus        74 ~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~  151 (299)
                        ...++.+++|.             .....+..+.+|...|.++.| +++ +|++++.||.|++||+.+++.+..+..+
T Consensus       126 --~~~dg~i~i~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  190 (425)
T 1r5m_A          126 --GVENGELRLWN-------------KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELK  190 (425)
T ss_dssp             --EETTSCEEEEE-------------TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred             --EeCCCeEEEEe-------------CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeecc
Confidence              22456667772             122334566899999999999 566 9999999999999999999999988876


Q ss_pred             Cc----------------eeEEEEecCCCEEEEEcCCeEEEEecCCcee--eeeccCCccceeeeeccCCCeEEEecCCC
Q 022303          152 NA----------------ASLVDFDFDESKIVGLIGTRICIWRRNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDG  213 (299)
Q Consensus       152 ~~----------------~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  213 (299)
                      ..                +..++|++++.+++++.++.|++||+.+...  .+..+...+. .+++++++..+++++.|+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~  269 (425)
T 1r5m_A          191 ETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPIS-VLEFNDTNKLLLSASDDG  269 (425)
T ss_dssp             ---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEE-EEEEETTTTEEEEEETTS
T ss_pred             ccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceE-EEEECCCCCEEEEEcCCC
Confidence            55                4459999987766699999999999997653  3444444443 568899999999999999


Q ss_pred             cEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022303          214 TARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       214 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      .|++||+++++.+..+..|...|.+++|+|+.++++++.|+.|++||+++++.+..+..+..  +|.+++|+|++++|++
T Consensus       270 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~  347 (425)
T 1r5m_A          270 TLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGRISQDGQKYAV  347 (425)
T ss_dssp             CEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTC--CEEEEEECTTSSEEEE
T ss_pred             EEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCc--cEEEEEEcCCCCEEEE
Confidence            99999999999998888899999999999988899999999999999999999999998887  8999999999999999


Q ss_pred             eecc
Q 022303          294 LCFL  297 (299)
Q Consensus       294 ~s~~  297 (299)
                      ++.-
T Consensus       348 ~~~d  351 (425)
T 1r5m_A          348 AFMD  351 (425)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9854

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=2.7e-28  Score=205.38  Aligned_cols=186  Identities=10%  Similarity=0.044  Sum_probs=150.4

Q ss_pred             eccccCeeEEEe-cCC-EEE--EEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCcee
Q 022303          109 KAHSVGVDQCRM-KRG-LIL--TGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRS  184 (299)
Q Consensus       109 ~~h~~~i~~~~~-~~~-~l~--s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~  184 (299)
                      ..+...+.+++| |++ +++  +++.|++|++||+.+++++..+..+..+..++|+|++++++.+.++.+.+|+..++..
T Consensus       130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~  209 (365)
T 4h5i_A          130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSC  209 (365)
T ss_dssp             CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCE
T ss_pred             CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcc
Confidence            345567888999 677 554  5558999999999999999999877777889999999999955567777777766543


Q ss_pred             ee----eccCCccceeeeeccCCCeEEEecCCC----cEEEEEcCCcce----eeeccccCCceeEEEeCCC-CeEEEEe
Q 022303          185 VF----PSREGTFMKGLCMRYFDPEAVVGCEDG----TARVFDMYSRKC----SQIIRMHCAPVTSLSLSED-QLIISGS  251 (299)
Q Consensus       185 ~~----~~~~~~~~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~-~~l~~~~  251 (299)
                      ..    ..+... ...++|+|++..+++++.|+    .++.||+.....    ...+..|...|++++|+|+ ++||+|+
T Consensus       210 ~~~~~~~~~~~~-v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs  288 (365)
T 4h5i_A          210 IARKTDFDKNWS-LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS  288 (365)
T ss_dssp             EEEECCCCTTEE-EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred             eeeeecCCCCCC-EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence            32    122222 23468899999999988777    588899876543    3455688899999999999 9999999


Q ss_pred             CCCcEEEEeCCCCceEEEe-eccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          252 SLGSIAISGLSSDQRVATL-RSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       252 ~dg~i~iwd~~~~~~~~~~-~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      .|++|+|||+++++++.++ .+|..  +|++++|+|||++|++||.-
T Consensus       289 ~D~~V~iwd~~~~~~~~~~~~gH~~--~V~~v~fSpdg~~laS~S~D  333 (365)
T 4h5i_A          289 NDNSIALVKLKDLSMSKIFKQAHSF--AITEVTISPDSTYVASVSAA  333 (365)
T ss_dssp             TTSCEEEEETTTTEEEEEETTSSSS--CEEEEEECTTSCEEEEEETT
T ss_pred             CCCEEEEEECCCCcEEEEecCcccC--CEEEEEECCCCCEEEEEeCC
Confidence            9999999999999999886 67887  99999999999999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.3e-30  Score=228.34  Aligned_cols=231  Identities=9%  Similarity=0.015  Sum_probs=168.9

Q ss_pred             CCCCCCCcchhccCcHHHHHHH----hhccCccchhhHHHhhhh------HHHHhhhhhHHHHHHhhhcCCCCCCCchhh
Q 022303           14 KKRSSKPRATIESLNGDIICMI----FSSLGFFDLVRCSAVCKS------WNAIINRCKLLQLLYCKLHGFSNTSGSSMR   83 (299)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~i----~~~~~h~~~v~~~~~~~~------~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~   83 (299)
                      ..+++..+.++++|+.+.....    ..+.+|.+.|.+++|+|+      +.+||+                ...|++++
T Consensus       175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs----------------~s~Dgtvr  238 (524)
T 2j04_B          175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSF----------------VSQEGTIN  238 (524)
T ss_dssp             -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEE----------------EETTSCEE
T ss_pred             hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEE----------------EecCCeEE
Confidence            3456678889999998765432    224467888999999997      456765                33678888


Q ss_pred             hhhhhhhhccccc-eeecCceeeEEeeccccCeeEEEe-cCCEEEEEeCCCcEEEEecCCce-eEEEecCCCcee-EE--
Q 022303           84 LHLEELAMKHHRF-ALEEGRIDIDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYK-CVEEYSLPNAAS-LV--  157 (299)
Q Consensus        84 ~~~~~~~~~~~~~-~l~~g~~~~~~~~~h~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~-~~--  157 (299)
                      +|  ++....... ....-.....++.+|...|+++.| +++.|++|+.||+|++||+.+++ +...+..|...+ .+  
T Consensus       239 lW--d~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~  316 (524)
T 2j04_B          239 FL--EIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVST  316 (524)
T ss_dssp             EE--ECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEE
T ss_pred             EE--EcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEE
Confidence            88  333221110 000011124467899999999999 55599999999999999999764 455677776554 47  


Q ss_pred             EEecCC-CEEE-EEcCCeEEEEecCCcee--eeeccCC-ccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc
Q 022303          158 DFDFDE-SKIV-GLIGTRICIWRRNGLRS--VFPSREG-TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH  232 (299)
Q Consensus       158 ~~~~~~-~~l~-~~~d~~i~v~d~~~~~~--~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  232 (299)
                      .|++++ .+|+ ++.|++|++||+++.+.  .+..+.. .....++|+|+++.+++++.|+.|++||++++..+..+.+|
T Consensus       317 ~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH  396 (524)
T 2j04_B          317 AYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR  396 (524)
T ss_dssp             ECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC
T ss_pred             EcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC
Confidence            567887 7888 99999999999987652  3333322 11224689999989999999999999999999888888899


Q ss_pred             CCceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022303          233 CAPVTSLSLSED-QLIISGSSLGSIAISGLS  262 (299)
Q Consensus       233 ~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~  262 (299)
                      ...|++++|+|+ ++|++|+.||+|++||+.
T Consensus       397 ~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          397 ETTITAIGVSRLHPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             SSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred             CCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence            999999999999 999999999999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.96  E-value=4.2e-30  Score=218.36  Aligned_cols=258  Identities=12%  Similarity=0.130  Sum_probs=204.7

Q ss_pred             CCCCCCCCcchhccCcHHHHH------HHhhccCccchhhHHHhhhh----H---HHHhhhhhHHHHHHhhhcCCCCCCC
Q 022303           13 PKKRSSKPRATIESLNGDIIC------MIFSSLGFFDLVRCSAVCKS----W---NAIINRCKLLQLLYCKLHGFSNTSG   79 (299)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~------~i~~~~~h~~~v~~~~~~~~----~---~~l~~~~~~w~~~~~~~~~~~~~~d   79 (299)
                      +....+..+..+++|+.+...      .+..+.+|...|.+++|+++    +   +++++                ...|
T Consensus        27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s----------------~~~d   90 (397)
T 1sq9_A           27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT----------------TSFS   90 (397)
T ss_dssp             SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE----------------EETT
T ss_pred             CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE----------------EcCC
Confidence            344455667789999988766      67777899999999999999    8   88886                2256


Q ss_pred             chhhhhhhhhhhccccceeecCceeeEEeecc-----ccCeeEEEec----C-C-E-EEEEeCCCcEEEEecCC------
Q 022303           80 SSMRLHLEELAMKHHRFALEEGRIDIDQWKAH-----SVGVDQCRMK----R-G-L-ILTGVGDKVMRLWSLEG------  141 (299)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h-----~~~i~~~~~~----~-~-~-l~s~~~dg~i~iwd~~~------  141 (299)
                      +.+++|.  +.....     .....+..+.+|     ...|.++.|.    . + + |++++.||.|++||+.+      
T Consensus        91 g~i~iw~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  163 (397)
T 1sq9_A           91 GDLLFYR--ITREDE-----TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  163 (397)
T ss_dssp             SCEEEEE--EEECTT-----TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             CCEEEEE--ccCCcc-----cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence            7777773  222111     001114566788     5999999886    3 3 7 99999999999999998      


Q ss_pred             ceeEE-----EecC-------C-CceeEEEEecCCCEEE-EEcCCeEEEEecCCcee--eeec---c---CCccceeeee
Q 022303          142 YKCVE-----EYSL-------P-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS--VFPS---R---EGTFMKGLCM  199 (299)
Q Consensus       142 ~~~~~-----~~~~-------~-~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~--~~~~---~---~~~~~~~~~~  199 (299)
                      ++.+.     .+..       + ..+..++|+|++ .++ ++.|+.|++||+++.+.  .+..   +   ...+ ..+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i-~~i~~  241 (397)
T 1sq9_A          164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI-RSVKF  241 (397)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE-EEEEE
T ss_pred             cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc-ceEEE
Confidence            66655     5632       3 445569999999 888 89999999999998753  3333   3   3333 35688


Q ss_pred             ccCCCeEEEecCC---CcEEEEEcCCcceeeeccc-------------cCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022303          200 RYFDPEAVVGCED---GTARVFDMYSRKCSQIIRM-------------HCAPVTSLSLSED-QLIISGSSLGSIAISGLS  262 (299)
Q Consensus       200 ~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~-------------~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~  262 (299)
                      ++++..+++++.|   +.|++||+++++.+..+..             |...|.+++|+|+ ++|++++.||.|++||++
T Consensus       242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  321 (397)
T 1sq9_A          242 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK  321 (397)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             CCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            9999999999999   9999999999999998887             9999999999999 999999999999999999


Q ss_pred             CCceEEEee------cc---------------CCCCcEEEEEccCCC----------CeEEeeecc
Q 022303          263 SDQRVATLR------ST---------------DCTGHIICLMYPQFL----------HMLFFLCFL  297 (299)
Q Consensus       263 ~~~~~~~~~------~~---------------~~~~~i~~~~~s~~g----------~~l~s~s~~  297 (299)
                      +++++..+.      .|               ..  +|++++|+|+|          ++|++|+.-
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d  385 (397)
T 1sq9_A          322 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP--GVFDVKFLKKGWRSGMGADLNESLCCVCLD  385 (397)
T ss_dssp             TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC--CEEEEEEECTTTSBSTTCTTSCEEEEEETT
T ss_pred             CCceeEEEecccCcccchhhhhccccccccccCC--ceeEEEeccccccccccccccceEEEecCC
Confidence            999999998      66               66  89999999998          799998854

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.1e-30  Score=219.65  Aligned_cols=253  Identities=9%  Similarity=0.090  Sum_probs=199.7

Q ss_pred             CCcchhccCcHHHHHH--HhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccc
Q 022303           19 KPRATIESLNGDIICM--IFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRF   96 (299)
Q Consensus        19 ~~~~~~~~~~~~~~~~--i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (299)
                      ..+..+++|+.+....  ......|.+.|.+++|+|+++++++                ...|+.+++|..  ....   
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----------------~~~dg~v~vw~~--~~~~---  100 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAG----------------ALDNGSLELYST--NEAN---  100 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEE----------------EESSSCEEEECC--SSTT---
T ss_pred             CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEE----------------EccCCeEEEeec--cccc---
Confidence            5677899999887652  3444579999999999999999986                225667777732  2110   


Q ss_pred             eeecCceeeEEeeccccCeeEEEe-cC-C-EEEEEeCCCcEEEEecCCce------eEEEe---cCCC-ceeEEEEecC-
Q 022303           97 ALEEGRIDIDQWKAHSVGVDQCRM-KR-G-LILTGVGDKVMRLWSLEGYK------CVEEY---SLPN-AASLVDFDFD-  162 (299)
Q Consensus        97 ~l~~g~~~~~~~~~h~~~i~~~~~-~~-~-~l~s~~~dg~i~iwd~~~~~------~~~~~---~~~~-~~~~~~~~~~-  162 (299)
                         .+...+..+.+|...|.++.| ++ + +|++++.||.|++||+.+++      ....+   ..|. .+..++|+|+ 
T Consensus       101 ---~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  177 (416)
T 2pm9_A          101 ---NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL  177 (416)
T ss_dssp             ---SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC
T ss_pred             ---ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC
Confidence               122346677899999999999 54 4 99999999999999999876      33322   3343 4556999999 


Q ss_pred             CCEEE-EEcCCeEEEEecCCceeee--eccC-----CccceeeeeccCCC-eEEEecCCC---cEEEEEcCCc-ceeeec
Q 022303          163 ESKIV-GLIGTRICIWRRNGLRSVF--PSRE-----GTFMKGLCMRYFDP-EAVVGCEDG---TARVFDMYSR-KCSQII  229 (299)
Q Consensus       163 ~~~l~-~~~d~~i~v~d~~~~~~~~--~~~~-----~~~~~~~~~~~~~~-~l~s~~~d~---~i~iwd~~~~-~~~~~~  229 (299)
                      +.+++ ++.|+.|++||+++.+...  ..+.     ......+++++++. .+++++.|+   .|++||++++ +.+..+
T Consensus       178 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~  257 (416)
T 2pm9_A          178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTL  257 (416)
T ss_dssp             TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCC
T ss_pred             CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEe
Confidence            67777 8999999999999876332  2221     22233568888874 689999998   9999999986 567777


Q ss_pred             c-ccCCceeEEEeCC-C-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCC-CeEEeeecc
Q 022303          230 R-MHCAPVTSLSLSE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL-HMLFFLCFL  297 (299)
Q Consensus       230 ~-~~~~~i~~~~~~~-~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~s~s~~  297 (299)
                      . .|...|.+++|+| + ++|++++.|+.|++||+++++++..+..|..  .|.+++|+|++ .+|++++.-
T Consensus       258 ~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~l~s~~~d  327 (416)
T 2pm9_A          258 NQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN--WCFKTKFAPEAPDLFACASFD  327 (416)
T ss_dssp             CSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS--CCCCEEECTTCTTEEEECCSS
T ss_pred             ecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC--ceEEEEECCCCCCEEEEEecC
Confidence            7 8999999999999 7 8999999999999999999999999999888  89999999999 899988753

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.96  E-value=4.9e-30  Score=219.61  Aligned_cols=251  Identities=13%  Similarity=0.148  Sum_probs=193.4

Q ss_pred             CCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcccc
Q 022303           16 RSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHR   95 (299)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (299)
                      ..+..+..+.+|+.........+..| ..+.+..++++++.+++                ...|+.+++|  ++..    
T Consensus        72 ~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~----------------~~~dg~i~iw--d~~~----  128 (420)
T 3vl1_A           72 YKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFIL----------------GTTEGDIKVL--DSNF----  128 (420)
T ss_dssp             EEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEE----------------EETTSCEEEE--CTTS----
T ss_pred             EEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEE----------------EECCCCEEEE--eCCC----
Confidence            33445667888988776655555555 55555678889888886                2256677777  3221    


Q ss_pred             ceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcC
Q 022303           96 FALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIG  171 (299)
Q Consensus        96 ~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d  171 (299)
                            ......+.+|.+.|.++.| +++ +|++|+.|+.|++||+.+++.+..+..|...+. ++|+|+++.|+ ++.|
T Consensus       129 ------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  202 (420)
T 3vl1_A          129 ------NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD  202 (420)
T ss_dssp             ------CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETT
T ss_pred             ------cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCC
Confidence                  2224455799999999999 566 999999999999999999999999987765554 99999999999 9999


Q ss_pred             CeEEEEecCCceee--eeccCC-----------------------ccceeeeeccCCCeEEEecCCCcEEEEEcCCccee
Q 022303          172 TRICIWRRNGLRSV--FPSREG-----------------------TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS  226 (299)
Q Consensus       172 ~~i~v~d~~~~~~~--~~~~~~-----------------------~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  226 (299)
                      +.|++||+++++..  +..+..                       .....+++++++..+++++.||.|++||+++++.+
T Consensus       203 ~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~  282 (420)
T 3vl1_A          203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT  282 (420)
T ss_dssp             SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE
T ss_pred             CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee
Confidence            99999999987533  222111                       11112467788888999999999999999998877


Q ss_pred             eecc-ccCCceeEEEeCCC-C-eEEEEeCCCcEEEEeCCCCce-EEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          227 QIIR-MHCAPVTSLSLSED-Q-LIISGSSLGSIAISGLSSDQR-VATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       227 ~~~~-~~~~~i~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ..+. .|...|.+++|+|+ . +|++|+.||.|++||+++++. +..+..++.. .|.++.+ +++++|++++.-
T Consensus       283 ~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~-~v~~~~~-~~~~~l~s~~~d  355 (420)
T 3vl1_A          283 IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGT-PINNVYF-AAGALFVSSGFD  355 (420)
T ss_dssp             EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTS-CEEEEEE-ETTEEEEEETTT
T ss_pred             EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCC-CceEEEe-CCCCEEEEecCC
Confidence            6664 57889999999998 6 999999999999999998754 7788775543 7888855 578899998753

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.96  E-value=6e-30  Score=214.05  Aligned_cols=246  Identities=12%  Similarity=0.130  Sum_probs=192.6

Q ss_pred             cchhccCcHHHHHHHhh-ccCccchhhHHHhhhh---HHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccc
Q 022303           21 RATIESLNGDIICMIFS-SLGFFDLVRCSAVCKS---WNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRF   96 (299)
Q Consensus        21 ~~~~~~~~~~~~~~i~~-~~~h~~~v~~~~~~~~---~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (299)
                      +..+.+|+.+....... ..+|.+.|.+++|+|+   ++++++                ...|+.+++|..  ...    
T Consensus        43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~----------------~~~dg~i~iwd~--~~~----  100 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLAT----------------GDFGGNLHIWNL--EAP----  100 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEE----------------EETTSCEEEECT--TSC----
T ss_pred             CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEE----------------ecCCCeEEEEeC--CCC----
Confidence            67899999886553322 3389999999999998   688876                225677778732  222    


Q ss_pred             eeecCceeeEEeeccccCeeEEEe-------cCC-EEEEEeCCCcEEEEecCCce-eEEEecCCC-----ceeEEE----
Q 022303           97 ALEEGRIDIDQWKAHSVGVDQCRM-------KRG-LILTGVGDKVMRLWSLEGYK-CVEEYSLPN-----AASLVD----  158 (299)
Q Consensus        97 ~l~~g~~~~~~~~~h~~~i~~~~~-------~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~-----~~~~~~----  158 (299)
                           ...+..+.+|...|.++.|       +++ +|++++.||.|++||+.+++ .+..+..+.     .+..++    
T Consensus       101 -----~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  175 (357)
T 3i2n_A          101 -----EMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA  175 (357)
T ss_dssp             -----SSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC
T ss_pred             -----CccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec
Confidence                 2234566899999999965       344 99999999999999999887 677776433     344466    


Q ss_pred             EecCCCEEE-EEcCCeEEEEecCCceeee-eccCCccceeeeecc---CCCeEEEecCCCcEEEEEcCCcceeeecc---
Q 022303          159 FDFDESKIV-GLIGTRICIWRRNGLRSVF-PSREGTFMKGLCMRY---FDPEAVVGCEDGTARVFDMYSRKCSQIIR---  230 (299)
Q Consensus       159 ~~~~~~~l~-~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---  230 (299)
                      |+++++.++ ++.|+.|++||+++.+... ..+...+ ..+++++   ++..+++++.|+.|++||+++++.+..+.   
T Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  254 (357)
T 3i2n_A          176 YNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGV-CSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVS  254 (357)
T ss_dssp             CC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCE-EEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEE
T ss_pred             cCCCCCEEEEEccCCeEEEEECccCceeeecCCCCce-EEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeec
Confidence            678999999 9999999999999886433 3333333 3568888   78889999999999999999877665554   


Q ss_pred             --ccCCceeEEEeCCC-C-eEEEEeCCCcEEEEeCCCC-------------------ceEEEeeccCCCCcEEEEEccCC
Q 022303          231 --MHCAPVTSLSLSED-Q-LIISGSSLGSIAISGLSSD-------------------QRVATLRSTDCTGHIICLMYPQF  287 (299)
Q Consensus       231 --~~~~~i~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~~~~~~~i~~~~~s~~  287 (299)
                        .|...|.+++|+|+ . ++++++.||.|++||++++                   +++..+..|..  +|++++|+|+
T Consensus       255 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~  332 (357)
T 3i2n_A          255 EKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ--PISSLDWSPD  332 (357)
T ss_dssp             EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS--CEEEEEECSS
T ss_pred             cCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC--CeeEEEEcCC
Confidence              89999999999998 6 8999999999999999754                   46778888887  9999999999


Q ss_pred             CCeEE-eeec
Q 022303          288 LHMLF-FLCF  296 (299)
Q Consensus       288 g~~l~-s~s~  296 (299)
                      |++|+ +++.
T Consensus       333 ~~~l~~s~~~  342 (357)
T 3i2n_A          333 KRGLCVCSSF  342 (357)
T ss_dssp             STTEEEEEET
T ss_pred             CCeEEEEecC
Confidence            99998 6774

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.96  E-value=4.5e-29  Score=230.60  Aligned_cols=253  Identities=17%  Similarity=0.167  Sum_probs=208.4

Q ss_pred             CCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhc
Q 022303           13 PKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMK   92 (299)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (299)
                      +..+.+..+..+.+|+.+....+..+.+|.+.|++++|+|+++.+++                ...|+.+++|..  .. 
T Consensus        26 ~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----------------~~~dg~i~vw~~--~~-   86 (814)
T 3mkq_A           26 PWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV----------------GSDDFRIRVFNY--NT-   86 (814)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEE----------------EETTSEEEEEET--TT-
T ss_pred             CEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEE----------------EeCCCeEEEEEC--CC-
Confidence            34445556778999999888888888899999999999999999987                225677777732  21 


Q ss_pred             cccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCc-eeEEEecCCCc-eeEEEEec-CCCEEE
Q 022303           93 HHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY-KCVEEYSLPNA-ASLVDFDF-DESKIV  167 (299)
Q Consensus        93 ~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~-~~~~~~~~-~~~~l~  167 (299)
                               ...+..+.+|.+.|.++.| +++ +|++++.||.|++||+.++ .....+..|.. +..++|+| ++..++
T Consensus        87 ---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  157 (814)
T 3mkq_A           87 ---------GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA  157 (814)
T ss_dssp             ---------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred             ---------CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEE
Confidence                     2234566899999999999 566 9999999999999999987 67777777755 44599999 788888


Q ss_pred             -EEcCCeEEEEecCCcee--eeeccCCccceeeeecc--CCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeC
Q 022303          168 -GLIGTRICIWRRNGLRS--VFPSREGTFMKGLCMRY--FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS  242 (299)
Q Consensus       168 -~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  242 (299)
                       ++.||.|++||+.+...  .+..+.......+++++  +++.+++++.|+.|++||+++++.+..+..|...|.+++|+
T Consensus       158 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~  237 (814)
T 3mkq_A          158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH  237 (814)
T ss_dssp             EEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred             EEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence             99999999999987653  33333322233568888  78889999999999999999999999998999999999999


Q ss_pred             CC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCC--eEEeee
Q 022303          243 ED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLH--MLFFLC  295 (299)
Q Consensus       243 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~s~s  295 (299)
                      |+ .++++++.||.|++||+.+++.+..+..+..  .+.+++|+|+|.  ++++++
T Consensus       238 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~  291 (814)
T 3mkq_A          238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGF  291 (814)
T ss_dssp             SSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEEe
Confidence            99 8999999999999999999999999998887  899999999987  466554

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.96  E-value=4.9e-30  Score=219.60  Aligned_cols=252  Identities=13%  Similarity=0.158  Sum_probs=192.7

Q ss_pred             CCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhc
Q 022303           13 PKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMK   92 (299)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (299)
                      +....+..+..+.+|+.+....+..+.+|.+.|.+++|+|+++++++                ...|+.+++|  ++...
T Consensus       110 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s----------------~s~d~~i~iw--d~~~~  171 (420)
T 3vl1_A          110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALIS----------------SSQDMQLKIW--SVKDG  171 (420)
T ss_dssp             CEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEE----------------EETTSEEEEE--ETTTC
T ss_pred             CEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEE----------------EeCCCeEEEE--eCCCC
Confidence            34444556778999998876666566699999999999999998886                3356777888  33322


Q ss_pred             cccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCC----ce------------
Q 022303           93 HHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN----AA------------  154 (299)
Q Consensus        93 ~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~------------  154 (299)
                      .          .+..+.+|...|.++.| +++ +|++++.||.|++||+.+++.+..+..+.    .+            
T Consensus       172 ~----------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  241 (420)
T 3vl1_A          172 S----------NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ  241 (420)
T ss_dssp             C----------CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS
T ss_pred             c----------CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce
Confidence            2          24556899999999999 556 99999999999999999999998887431    12            


Q ss_pred             ---------eEEEEecCCCEEE-EEcCCeEEEEecCCceeeeec---cCCccceeeeeccCCC-eEEEecCCCcEEEEEc
Q 022303          155 ---------SLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS---REGTFMKGLCMRYFDP-EAVVGCEDGTARVFDM  220 (299)
Q Consensus       155 ---------~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~  220 (299)
                               ..++|+|++++++ ++.||.|++||+++.......   +... ...+++++++. .+++|+.||.|++||+
T Consensus       242 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~g~~dg~i~vwd~  320 (420)
T 3vl1_A          242 LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS-CNSLTVDGNNANYIYAGYENGMLAQWDL  320 (420)
T ss_dssp             CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSC-EEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred             eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCC-ceeEEEeCCCCCEEEEEeCCCeEEEEEc
Confidence                     2245578888988 999999999999987644333   2333 33568889888 8999999999999999


Q ss_pred             CCcce-eeeccc-cCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCC---------ceEEEeeccCCCCcEEEEEccCCCC
Q 022303          221 YSRKC-SQIIRM-HCAPVTSLSLSEDQLIISGSSLGSIAISGLSSD---------QRVATLRSTDCTGHIICLMYPQFLH  289 (299)
Q Consensus       221 ~~~~~-~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~~i~~~~~s~~g~  289 (299)
                      ++++. +..+.. |...|.++.+.++++|++++.|+.|++||+...         .....+..+..  .|.+++|+|+++
T Consensus       321 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~  398 (420)
T 3vl1_A          321 RSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDD--AVSQFCYVSDDE  398 (420)
T ss_dssp             TCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSC--CCCEEEEECCSS
T ss_pred             CCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCc--ceEEEEEccCCC
Confidence            98754 666665 677888887765589999999999999998763         22233445555  899999999999


Q ss_pred             ---eEEeee
Q 022303          290 ---MLFFLC  295 (299)
Q Consensus       290 ---~l~s~s  295 (299)
                         .|++.+
T Consensus       399 ~~g~l~a~g  407 (420)
T 3vl1_A          399 SNGEVLEVG  407 (420)
T ss_dssp             SSCEEEEEE
T ss_pred             CcceEEEEc
Confidence               444443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=9.2e-29  Score=210.41  Aligned_cols=257  Identities=9%  Similarity=0.104  Sum_probs=194.0

Q ss_pred             cchhccCcHHHHHHHhhccCccchhhHHHhhh-hHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceee
Q 022303           21 RATIESLNGDIICMIFSSLGFFDLVRCSAVCK-SWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALE   99 (299)
Q Consensus        21 ~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~-~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~   99 (299)
                      ...+++|+.+.......+.+|.+.|.+++|+| +++++++                ...|+.+++|  ++........+.
T Consensus        22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~----------------~~~dg~i~iw--~~~~~~~~~~~~   83 (408)
T 4a11_B           22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLS----------------GGSDGVIVLY--DLENSSRQSYYT   83 (408)
T ss_dssp             HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEE----------------EETTSCEEEE--ECCCCSSSSCEE
T ss_pred             cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEE----------------EcCCCeEEEE--ECCCCcccceEe
Confidence            34455666655555555668999999999999 9999987                2256777777  333222221111


Q ss_pred             cCcee---eEEeeccccCeeEEEe-c-CC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCC---CEEE-EE
Q 022303          100 EGRID---IDQWKAHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE---SKIV-GL  169 (299)
Q Consensus       100 ~g~~~---~~~~~~h~~~i~~~~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~-~~  169 (299)
                      .....   .....+|...|.++.| + ++ +|++++.||.|++||+.+++.+..+.....+..+.+.+.+   .+++ ++
T Consensus        84 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (408)
T 4a11_B           84 CKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGT  163 (408)
T ss_dssp             ECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEE
T ss_pred             ccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEc
Confidence            00000   0111369999999999 5 44 9999999999999999999999999877777779998854   4777 99


Q ss_pred             cCCeEEEEecCCce--eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcc-eeeec---------------c
Q 022303          170 IGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK-CSQII---------------R  230 (299)
Q Consensus       170 ~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~-~~~~~---------------~  230 (299)
                      .++.|++||++++.  ..+..+.+.+. .+++++++++ +++++.|+.|++||++++. .+..+               .
T Consensus       164 ~~~~v~~~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (408)
T 4a11_B          164 RGPKVQLCDLKSGSCSHILQGHRQEIL-AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT  242 (408)
T ss_dssp             SSSSEEEEESSSSCCCEEECCCCSCEE-EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSC
T ss_pred             CCCeEEEEeCCCcceeeeecCCCCcEE-EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccc
Confidence            99999999998775  34444555444 5688999886 8899999999999998765 33333               4


Q ss_pred             ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC---------------------------------------------
Q 022303          231 MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD---------------------------------------------  264 (299)
Q Consensus       231 ~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~---------------------------------------------  264 (299)
                      .|...|.+++|+|+ ++|++++.||.|++||++++                                             
T Consensus       243 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~  322 (408)
T 4a11_B          243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVY  322 (408)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETT
T ss_pred             cccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECc
Confidence            68889999999999 89999999999999998754                                             


Q ss_pred             --ceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          265 --QRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       265 --~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                        +++..+.+|..  .|++++|+|++++|++|+.-+
T Consensus       323 ~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg  356 (408)
T 4a11_B          323 SGEQITMLKGHYK--TVDCCVFQSNFQELYSGSRDC  356 (408)
T ss_dssp             TCCEEEEECCCSS--CEEEEEEETTTTEEEEEETTS
T ss_pred             CCcceeeeccCCC--eEEEEEEcCCCCEEEEECCCC
Confidence              34566667776  899999999999999998643

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.96  E-value=5.3e-29  Score=212.32  Aligned_cols=245  Identities=11%  Similarity=0.073  Sum_probs=194.0

Q ss_pred             cchhccCcHHHHHHHhhcc-CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceee
Q 022303           21 RATIESLNGDIICMIFSSL-GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALE   99 (299)
Q Consensus        21 ~~~~~~~~~~~~~~i~~~~-~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~   99 (299)
                      +..+.+|+.+.......+. +|.+.|.+++|+|+++++++                ...|+.+++|  ++..        
T Consensus       112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~----------------~~~dg~i~iw--d~~~--------  165 (401)
T 4aez_A          112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSV----------------GLGNGLVDIY--DVES--------  165 (401)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEE----------------EETTSCEEEE--ETTT--------
T ss_pred             CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEE----------------ECCCCeEEEE--ECcC--------
Confidence            4567788887766544444 48889999999999998886                2246677777  3221        


Q ss_pred             cCceeeEEeeccccCeeEEEecCCEEEEEeCCCcEEEEecC-CceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEE
Q 022303          100 EGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLE-GYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICI  176 (299)
Q Consensus       100 ~g~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v  176 (299)
                        ...+..+.+|...|.++.|.+.+|++|+.||.|++||+. ....+..+..|...+. ++|+|+++.++ ++.|+.|++
T Consensus       166 --~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~i  243 (401)
T 4aez_A          166 --QTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQI  243 (401)
T ss_dssp             --CCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             --CeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEE
Confidence              223556689999999999977799999999999999998 5667777877765555 99999999999 999999999


Q ss_pred             EecCCcee--eeeccCCccceeeeeccCCCe-EEEec--CCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEE-
Q 022303          177 WRRNGLRS--VFPSREGTFMKGLCMRYFDPE-AVVGC--EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIIS-  249 (299)
Q Consensus       177 ~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~-l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~-  249 (299)
                      ||+++...  .+..+...+. .+++++++.. +++++  .|+.|++||+++++.+..+. +...|.+++|+|+ +++++ 
T Consensus       244 wd~~~~~~~~~~~~~~~~v~-~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~  321 (401)
T 4aez_A          244 WDARSSIPKFTKTNHNAAVK-AVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMST  321 (401)
T ss_dssp             EETTCSSEEEEECCCSSCCC-EEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEE
T ss_pred             ccCCCCCccEEecCCcceEE-EEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEE
Confidence            99998753  3344544444 5688887766 55544  79999999999999988884 6678999999999 88888 


Q ss_pred             -EeCCCcEEEEeCCCCceEEE--eeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          250 -GSSLGSIAISGLSSDQRVAT--LRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       250 -~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                       |+.||.|++||+++++....  +..|..  .|.+++|+|+|++|++++.-
T Consensus       322 ~g~~dg~i~v~~~~~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~~~d  370 (401)
T 4aez_A          322 HGFPDNNLSIWSYSSSGLTKQVDIPAHDT--RVLYSALSPDGRILSTAASD  370 (401)
T ss_dssp             ECTTTCEEEEEEEETTEEEEEEEEECCSS--CCCEEEECTTSSEEEEECTT
T ss_pred             eecCCCcEEEEecCCccceeEEEecCCCC--CEEEEEECCCCCEEEEEeCC
Confidence             44899999999998665544  567776  89999999999999999854

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=2.8e-29  Score=214.08  Aligned_cols=257  Identities=14%  Similarity=0.049  Sum_probs=194.0

Q ss_pred             CCCcchhccCcHHHH----HHHhhccCccchhhHHHhhh-hHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhc
Q 022303           18 SKPRATIESLNGDII----CMIFSSLGFFDLVRCSAVCK-SWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMK   92 (299)
Q Consensus        18 ~~~~~~~~~~~~~~~----~~i~~~~~h~~~v~~~~~~~-~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (299)
                      +..+..+.+|+.+..    ..+..+.+|.+.|.+++|+| +++++++                ...|+.+++|..  ...
T Consensus        53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s----------------~s~dg~v~vw~~--~~~  114 (402)
T 2aq5_A           53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIAS----------------GSEDCTVMVWEI--PDG  114 (402)
T ss_dssp             CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEE----------------EETTSEEEEEEC--CTT
T ss_pred             EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEE----------------EeCCCeEEEEEc--cCC
Confidence            345677888886442    23445668999999999999 8888887                336777888832  222


Q ss_pred             cccceeecCceeeEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEe--cCCCce-eEEEEecCCCEE
Q 022303           93 HHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEY--SLPNAA-SLVDFDFDESKI  166 (299)
Q Consensus        93 ~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~-~~~~~~~~~~~l  166 (299)
                      ...   ......+..+.+|...|.++.| +++  +|++++.||.|++||+.+++.+..+  ..|... ..++|+|+++.|
T Consensus       115 ~~~---~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  191 (402)
T 2aq5_A          115 GLV---LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI  191 (402)
T ss_dssp             CCS---SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred             CCc---cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence            111   1111335677899999999999 553  8999999999999999999999998  666544 459999999999


Q ss_pred             E-EEcCCeEEEEecCCceee--e-eccCCccceeeeeccCCCeEEEe---cCCCcEEEEEcCCcce-eeecc-ccCCcee
Q 022303          167 V-GLIGTRICIWRRNGLRSV--F-PSREGTFMKGLCMRYFDPEAVVG---CEDGTARVFDMYSRKC-SQIIR-MHCAPVT  237 (299)
Q Consensus       167 ~-~~~d~~i~v~d~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~-~~~~~-~~~~~i~  237 (299)
                      + ++.|+.|++||+++....  + ..+.+.....+++++++..+++|   +.|+.|++||+++++. +.... .+...+.
T Consensus       192 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~  271 (402)
T 2aq5_A          192 CTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVL  271 (402)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCE
T ss_pred             EEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCcee
Confidence            8 999999999999987633  2 34444433456888988888888   7999999999998664 32222 5677899


Q ss_pred             EEEeCCC-CeEE-EEeCCCcEEEEeCCCCce-EEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          238 SLSLSED-QLII-SGSSLGSIAISGLSSDQR-VATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       238 ~~~~~~~-~~l~-~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      +++|+|+ ++|+ +|+.||.|++||+.+++. +..+..+....+|.+++|+|++.++++++
T Consensus       272 ~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~  332 (402)
T 2aq5_A          272 LPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKC  332 (402)
T ss_dssp             EEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGT
T ss_pred             EEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecc
Confidence            9999999 7775 566799999999998874 55555543222899999999999887643

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.96  E-value=1.5e-28  Score=208.77  Aligned_cols=233  Identities=10%  Similarity=0.107  Sum_probs=185.7

Q ss_pred             hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCee
Q 022303           37 SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVD  116 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~  116 (299)
                      .+.+|.+.|.+++|+|  +++++                ...|+.+++|..  ......    .....+..+.+|..+|.
T Consensus        11 ~~~~h~~~i~~~~~~~--~~l~s----------------~~~dg~i~iw~~--~~~~~~----~~~~~~~~~~~h~~~v~   66 (397)
T 1sq9_A           11 AGKAHDADIFSVSACN--SFTVS----------------CSGDGYLKVWDN--KLLDNE----NPKDKSYSHFVHKSGLH   66 (397)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEE----------------EETTSEEEEEES--BCCTTC----CGGGGEEEEECCTTCEE
T ss_pred             hhhhhhcCeEEEEecC--CeEEE----------------EcCCCEEEEEEC--CCcccc----cCCCcceEEecCCCcEE
Confidence            3458999999999999  66665                236677788832  222100    00112556689999999


Q ss_pred             EEEe-cC--------CEEEEEeCCCcEEEEecCCcee-----EEEecCC------CceeEEEEe----cCCCE-EE-EEc
Q 022303          117 QCRM-KR--------GLILTGVGDKVMRLWSLEGYKC-----VEEYSLP------NAASLVDFD----FDESK-IV-GLI  170 (299)
Q Consensus       117 ~~~~-~~--------~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~------~~~~~~~~~----~~~~~-l~-~~~  170 (299)
                      ++.| ++        .+|++++.||.|++||+.+++.     ...+..+      ..+..++|+    |+++. ++ ++.
T Consensus        67 ~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~  146 (397)
T 1sq9_A           67 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV  146 (397)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET
T ss_pred             EEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC
Confidence            9999 55        5899999999999999998886     7788777      556669999    99998 88 899


Q ss_pred             CCeEEEEecCC------cee-------eee-------ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc
Q 022303          171 GTRICIWRRNG------LRS-------VFP-------SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR  230 (299)
Q Consensus       171 d~~i~v~d~~~------~~~-------~~~-------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  230 (299)
                      |+.|++||+.+      ...       .+.       .+...+ ..+++++++ .+++++.|+.|++||+++++.+..+.
T Consensus       147 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~  224 (397)
T 1sq9_A          147 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA-TSVDISERG-LIATGFNNGTVQISELSTLRPLYNFE  224 (397)
T ss_dssp             TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCC-CEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred             CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCc-eEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEe
Confidence            99999999987      432       221       133333 356899999 99999999999999999999999888


Q ss_pred             c---c---CCceeEEEeCCC-CeEEEEeCC---CcEEEEeCCCCceEEEeec-------------cCCCCcEEEEEccCC
Q 022303          231 M---H---CAPVTSLSLSED-QLIISGSSL---GSIAISGLSSDQRVATLRS-------------TDCTGHIICLMYPQF  287 (299)
Q Consensus       231 ~---~---~~~i~~~~~~~~-~~l~~~~~d---g~i~iwd~~~~~~~~~~~~-------------~~~~~~i~~~~~s~~  287 (299)
                      .   |   ...|.+++|+|+ ++|++++.|   +.|++||+++++.+..+..             |..  .|.+++|+|+
T Consensus       225 ~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~  302 (397)
T 1sq9_A          225 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS--WVMSLSFNDS  302 (397)
T ss_dssp             CCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS--CEEEEEECSS
T ss_pred             ccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC--cEEEEEECCC
Confidence            8   8   999999999999 999999999   9999999999999999988             777  8999999999


Q ss_pred             CCeEEeeecc
Q 022303          288 LHMLFFLCFL  297 (299)
Q Consensus       288 g~~l~s~s~~  297 (299)
                      +++|++++.-
T Consensus       303 ~~~l~~~~~d  312 (397)
T 1sq9_A          303 GETLCSAGWD  312 (397)
T ss_dssp             SSEEEEEETT
T ss_pred             CCEEEEEeCC
Confidence            9999999853

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.96  E-value=1.9e-29  Score=211.62  Aligned_cols=246  Identities=14%  Similarity=0.168  Sum_probs=189.9

Q ss_pred             cchhccCcHHHHHHHhhccC-----ccchhhHHHhhhh----HHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhh
Q 022303           21 RATIESLNGDIICMIFSSLG-----FFDLVRCSAVCKS----WNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAM   91 (299)
Q Consensus        21 ~~~~~~~~~~~~~~i~~~~~-----h~~~v~~~~~~~~----~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~   91 (299)
                      ...+.+|+.+....+..+..     |.+.|.+++|+++    ++++++                ...|+.+++|..  ..
T Consensus        43 ~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~----------------~~~dg~i~v~d~--~~  104 (366)
T 3k26_A           43 SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV----------------AGSRGIIRIINP--IT  104 (366)
T ss_dssp             TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE----------------EETTCEEEEECT--TT
T ss_pred             CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE----------------ecCCCEEEEEEc--hh
Confidence            45788999887665544432     5678999999999    456775                225677788832  22


Q ss_pred             ccccceeecCceeeEEeeccccCeeEEEe-c-CC-EEEEEeCCCcEEEEecCCceeEEEe---cCCCc-eeEEEEecCCC
Q 022303           92 KHHRFALEEGRIDIDQWKAHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEGYKCVEEY---SLPNA-ASLVDFDFDES  164 (299)
Q Consensus        92 ~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~-~~~~~~~~~~~  164 (299)
                                ...+..+.+|...|.++.| + ++ +|++++.||.|++||+.+++.+..+   ..|.. +..++|+|+++
T Consensus       105 ----------~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  174 (366)
T 3k26_A          105 ----------MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE  174 (366)
T ss_dssp             ----------CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSS
T ss_pred             ----------ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCC
Confidence                      1234566899999999999 5 55 9999999999999999999999888   45554 45599999999


Q ss_pred             EEE-EEcCCeEEEEecCCceee--eec----------------------------cCCccceeeeeccCCCeEEEecCCC
Q 022303          165 KIV-GLIGTRICIWRRNGLRSV--FPS----------------------------REGTFMKGLCMRYFDPEAVVGCEDG  213 (299)
Q Consensus       165 ~l~-~~~d~~i~v~d~~~~~~~--~~~----------------------------~~~~~~~~~~~~~~~~~l~s~~~d~  213 (299)
                      .++ ++.|+.|++||+++.+..  +..                            +...   +.++.+.+..+++++.|+
T Consensus       175 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~l~~~~~d~  251 (366)
T 3k26_A          175 KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY---VDCVRWLGDLILSKSCEN  251 (366)
T ss_dssp             EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC---CCEEEEETTEEEEECSSS
T ss_pred             EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce---EEEEEEcCCEEEEEecCC
Confidence            999 999999999999876421  111                            3333   334444478899999999


Q ss_pred             cEEEEEcCCcce--------------eeeccccCCceeEEEeCCC---CeEEEEeCCCcEEEEeCCCCc----eEEEeec
Q 022303          214 TARVFDMYSRKC--------------SQIIRMHCAPVTSLSLSED---QLIISGSSLGSIAISGLSSDQ----RVATLRS  272 (299)
Q Consensus       214 ~i~iwd~~~~~~--------------~~~~~~~~~~i~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~----~~~~~~~  272 (299)
                      .|++||+++++.              +..+..|...|.+++|+|+   ++|++|+.||.|++||+++++    ....+..
T Consensus       252 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  331 (366)
T 3k26_A          252 AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTH  331 (366)
T ss_dssp             EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECC
T ss_pred             EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcc
Confidence            999999987644              6667788889999999976   789999999999999999876    4447777


Q ss_pred             cCCCCcEEEEEccCCCCeEEeeecc
Q 022303          273 TDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       273 ~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      |.....|++++|+|++++|++++.-
T Consensus       332 ~~~~~~v~~~~~s~~~~~l~s~~~d  356 (366)
T 3k26_A          332 HKCGAAIRQTSFSRDSSILIAVCDD  356 (366)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             cccCCceEEEEeCCCCCeEEEEeCC
Confidence            7322289999999999999999864

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.1e-28  Score=209.82  Aligned_cols=212  Identities=11%  Similarity=0.042  Sum_probs=143.6

Q ss_pred             CCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEEe-c--------CC-EEEEEeCCCcEEEEecCCceeEEE
Q 022303           78 SGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-K--------RG-LILTGVGDKVMRLWSLEGYKCVEE  147 (299)
Q Consensus        78 ~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~--------~~-~l~s~~~dg~i~iwd~~~~~~~~~  147 (299)
                      .|.++|+|..  .......     ...+..+.+|.+.|+++.| |        ++ +|++|+.|++|+|||+.++.++..
T Consensus       109 ~d~~v~lw~~--~~~~~~~-----~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~  181 (393)
T 4gq1_A          109 QDNTVRLIIT--KNETIIT-----QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA  181 (393)
T ss_dssp             TTSCEEEEEE--ETTEEEE-----EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE
T ss_pred             CCCcEEEEEC--CCCccce-----eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee
Confidence            6788888843  2211110     0113456899999999999 3        44 999999999999999988776655


Q ss_pred             ec-CCCceeEEEEecCCC-EEE-EEcCCeEEEEecCCceeee---------------------------eccCCccceee
Q 022303          148 YS-LPNAASLVDFDFDES-KIV-GLIGTRICIWRRNGLRSVF---------------------------PSREGTFMKGL  197 (299)
Q Consensus       148 ~~-~~~~~~~~~~~~~~~-~l~-~~~d~~i~v~d~~~~~~~~---------------------------~~~~~~~~~~~  197 (299)
                      +. ++..+..++|+|++. +|+ ++.|+.|++||+++++...                           ..+......+.
T Consensus       182 ~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~  261 (393)
T 4gq1_A          182 GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVR  261 (393)
T ss_dssp             EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEE
T ss_pred             ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeee
Confidence            54 556677799999875 566 9999999999998754211                           11122222222


Q ss_pred             eeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEE------------------eCC--C-CeEEEEeCCCcE
Q 022303          198 CMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS------------------LSE--D-QLIISGSSLGSI  256 (299)
Q Consensus       198 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~------------------~~~--~-~~l~~~~~dg~i  256 (299)
                      -..+++..+++++.|+.+++||+..++....+..|...+..+.                  ++|  + .++++|+.||.|
T Consensus       262 ~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V  341 (393)
T 4gq1_A          262 WIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLI  341 (393)
T ss_dssp             EETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEE
T ss_pred             eecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEE
Confidence            2347788899999999999999988776655554443333332                  332  2 367788899999


Q ss_pred             EEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          257 AISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      ++||+.+++++..+..+..  +|++++|+|||++||+++-.+
T Consensus       342 ~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          342 QLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             EEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE
T ss_pred             EEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC
Confidence            9999999999888888887  999999999999999998644

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.3e-28  Score=210.92  Aligned_cols=247  Identities=10%  Similarity=-0.002  Sum_probs=176.6

Q ss_pred             CccchhhHHHhhhhH---------HHHhhhhhHHHHHHhhhc---CCCCCCCchhhhhhhhhhhccccceeecCceeeEE
Q 022303           40 GFFDLVRCSAVCKSW---------NAIINRCKLLQLLYCKLH---GFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQ  107 (299)
Q Consensus        40 ~h~~~v~~~~~~~~~---------~~l~~~~~~w~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~  107 (299)
                      .+.+.|.+++|+|+.         +++|....--........   -.....|+++++|.  +.......      ....+
T Consensus       131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd--~~~~~~~~------~~~~~  202 (524)
T 2j04_B          131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFK--MNTSTLHC------VKVQT  202 (524)
T ss_dssp             ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEE--EETTTCCE------EEEEE
T ss_pred             ECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEE--ccCCCCCc------eEEEE
Confidence            467789999999987         667651100000000000   00122677788883  22211100      01234


Q ss_pred             eeccccCeeEEEe-cC-------CEEEEEeCCCcEEEEecCCcee-----------EEEecCCCc-eeEEEEecCCCEEE
Q 022303          108 WKAHSVGVDQCRM-KR-------GLILTGVGDKVMRLWSLEGYKC-----------VEEYSLPNA-ASLVDFDFDESKIV  167 (299)
Q Consensus       108 ~~~h~~~i~~~~~-~~-------~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~~-~~~~~~~~~~~~l~  167 (299)
                      +.+|.+.|.++.| |+       ++|++++.||+|++||+.+++.           ...+..|.. +.+++|++++ .|+
T Consensus       203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~la  281 (524)
T 2j04_B          203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVV  281 (524)
T ss_dssp             EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEE
T ss_pred             EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEE
Confidence            5778899999999 53       3999999999999999986642           235566654 4459999865 666


Q ss_pred             -EEcCCeEEEEecCCce---eeeeccCCcccee-eeeccCC-CeEEEecCCCcEEEEEcCCcceeeeccccCC--ceeEE
Q 022303          168 -GLIGTRICIWRRNGLR---SVFPSREGTFMKG-LCMRYFD-PEAVVGCEDGTARVFDMYSRKCSQIIRMHCA--PVTSL  239 (299)
Q Consensus       168 -~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~-~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~i~~~  239 (299)
                       |+.||+|++||++++.   ..+..|.+.+..+ .++++++ ..|++++.|++|++||+++++.+..+.+|..  .|.++
T Consensus       282 sgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v  361 (524)
T 2j04_B          282 CGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPV  361 (524)
T ss_dssp             EEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCE
T ss_pred             EEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccce
Confidence             9999999999998653   3456676665544 2456666 6799999999999999999887777666643  58899


Q ss_pred             EeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          240 SLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       240 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +|+|+ +.+++++.|++|++||++++.++.++.+|..  .|++++|+|+|++|++||.-
T Consensus       362 ~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~--~V~sva~Sp~g~~l~Sgs~D  418 (524)
T 2j04_B          362 VYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET--TITAIGVSRLHPMVLAGSAD  418 (524)
T ss_dssp             EEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS--CEEEEECCSSCCBCEEEETT
T ss_pred             EeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC--ceEEEEeCCCCCeEEEEECC
Confidence            99998 8999999999999999999999889999988  99999999999999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.96  E-value=7e-29  Score=210.10  Aligned_cols=250  Identities=13%  Similarity=0.057  Sum_probs=189.7

Q ss_pred             CCCCCCCCcchhccCcHHHHHHHhhc--cCccchhhHHHhhh-hHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhh
Q 022303           13 PKKRSSKPRATIESLNGDIICMIFSS--LGFFDLVRCSAVCK-SWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEEL   89 (299)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~i~~~--~~h~~~v~~~~~~~-~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~   89 (299)
                      +....+..+..+++|+.+.......+  .+|.+.|.+++|+| +++.+++                ...|+.+++|  ++
T Consensus        87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s----------------~~~d~~i~iw--d~  148 (383)
T 3ei3_B           87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFV----------------SSIRGATTLR--DF  148 (383)
T ss_dssp             TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEE----------------EETTTEEEEE--ET
T ss_pred             CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEE----------------EeCCCEEEEE--EC
Confidence            34455556778999998876644443  37999999999999 6788876                2356777888  32


Q ss_pred             hhccccceeecCceeeEEe---eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCC
Q 022303           90 AMKHHRFALEEGRIDIDQW---KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDE  163 (299)
Q Consensus        90 ~~~~~~~~l~~g~~~~~~~---~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~  163 (299)
                      ..           ..+..+   .+|...|.++.| +++ +|++|+.|+.|++||+ +++.+..+..|...+ .++|+|++
T Consensus       149 ~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~  216 (383)
T 3ei3_B          149 SG-----------SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRC  216 (383)
T ss_dssp             TS-----------CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSC
T ss_pred             CC-----------CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCC
Confidence            21           122223   345588999999 555 9999999999999999 577888888776555 49999999


Q ss_pred             C-EEE-EEcCCeEEEEecCC----cee-eeeccCCccceeeeecc-CCCeEEEecCCCcEEEEEcCCcceeeeccccC--
Q 022303          164 S-KIV-GLIGTRICIWRRNG----LRS-VFPSREGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC--  233 (299)
Q Consensus       164 ~-~l~-~~~d~~i~v~d~~~----~~~-~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--  233 (299)
                      + +++ ++.|+.|++||+++    ... ....+...+. .+++++ ++..+++++.|+.|++||+++++....+..|.  
T Consensus       217 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  295 (383)
T 3ei3_B          217 DWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVN-AAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR  295 (383)
T ss_dssp             TTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEE-EEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBC
T ss_pred             CCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceE-EEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccc
Confidence            8 777 99999999999986    222 1223444433 568888 88899999999999999999887766665332  


Q ss_pred             ---------------CceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          234 ---------------APVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       234 ---------------~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                                     ..+..++++|+ ++  +|+.|+.|++||+.+++++..+..+.....+..++|+|+|++|++|+
T Consensus       296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s  371 (383)
T 3ei3_B          296 QFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM  371 (383)
T ss_dssp             CCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE
T ss_pred             ccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec
Confidence                           33445777777 54  78899999999999999999998754222778889999999999997

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.6e-29  Score=213.96  Aligned_cols=253  Identities=10%  Similarity=0.053  Sum_probs=200.8

Q ss_pred             CCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccc
Q 022303           15 KRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHH   94 (299)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (299)
                      ...+..+..+.+|+ .....+..+..|...|.+++|+|+++++++                ...|+.+++|  ++.... 
T Consensus       123 l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----------------~~~d~~i~iw--d~~~~~-  182 (425)
T 1r5m_A          123 IVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIIS----------------MDVENVTILW--NVISGT-  182 (425)
T ss_dssp             EEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEE----------------EETTCCEEEE--ETTTTE-
T ss_pred             EEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEE----------------EecCCeEEEE--ECCCCc-
Confidence            34444567888998 444556667789999999999999998886                2245666777  332222 


Q ss_pred             cceeecCceeeEEeeccccC---------------eeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCCcee-EE
Q 022303           95 RFALEEGRIDIDQWKAHSVG---------------VDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LV  157 (299)
Q Consensus        95 ~~~l~~g~~~~~~~~~h~~~---------------i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~  157 (299)
                               .+..+..|...               +.++.| +++.+++++.||.|++||+.+++.+..+..|...+ .+
T Consensus       183 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~  253 (425)
T 1r5m_A          183 ---------VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVL  253 (425)
T ss_dssp             ---------EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEE
T ss_pred             ---------EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEE
Confidence                     22333444444               888888 66699999999999999999999988888776555 49


Q ss_pred             EEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCC
Q 022303          158 DFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA  234 (299)
Q Consensus       158 ~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  234 (299)
                      +|+|++++++ ++.|+.|++||+++..  ..+..+...+. .+++++++ .+++++.|+.|++||+++++.+..+..|..
T Consensus       254 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  331 (425)
T 1r5m_A          254 EFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIV-SASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV  331 (425)
T ss_dssp             EEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEE-EEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC
T ss_pred             EECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEE-EEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc
Confidence            9999999998 9999999999998765  33444444433 46788888 899999999999999999999999988999


Q ss_pred             ceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc--------------------eEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022303          235 PVTSLSLSED-QLIISGSSLGSIAISGLSSDQ--------------------RVATLRSTDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       235 ~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      .|.+++|+|+ ++|++++.||.|++||+++++                    ++..+..+.....|++++|+|++++|++
T Consensus       332 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  411 (425)
T 1r5m_A          332 PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISV  411 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEE
T ss_pred             cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEE
Confidence            9999999999 999999999999999999888                    8888888743226999999999999999


Q ss_pred             eeccc
Q 022303          294 LCFLP  298 (299)
Q Consensus       294 ~s~~~  298 (299)
                      ++.-+
T Consensus       412 ~~~dg  416 (425)
T 1r5m_A          412 AYSLQ  416 (425)
T ss_dssp             EESSS
T ss_pred             EecCc
Confidence            87543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1e-29  Score=217.19  Aligned_cols=260  Identities=9%  Similarity=0.027  Sum_probs=196.3

Q ss_pred             CCCCCCcchhccCcHHH----HHHHhhccCccchhhHHHhhhh-HHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhh
Q 022303           15 KRSSKPRATIESLNGDI----ICMIFSSLGFFDLVRCSAVCKS-WNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEEL   89 (299)
Q Consensus        15 ~~~~~~~~~~~~~~~~~----~~~i~~~~~h~~~v~~~~~~~~-~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~   89 (299)
                      ...+..+..+++|+.+.    ...+..+.+|.+.|.+++|+|+ ++++++                ...|+.+++|  ++
T Consensus        82 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s----------------~~~dg~v~iw--d~  143 (416)
T 2pm9_A           82 IAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLAS----------------GGNNGEIFIW--DM  143 (416)
T ss_dssp             EEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEE----------------ECSSSCEEBC--BT
T ss_pred             EEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEE----------------EcCCCeEEEE--EC
Confidence            33344567888998876    2356667789999999999998 787876                3356777777  33


Q ss_pred             hhccccceeecCceeeEEeeccccCeeEEEe-cC-C-EEEEEeCCCcEEEEecCCceeEEEecCC-------CceeEEEE
Q 022303           90 AMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLP-------NAASLVDF  159 (299)
Q Consensus        90 ~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~  159 (299)
                      ........ .........+.+|...|.++.| ++ + +|++++.||.|++||+.+++.+..+..+       ..+..++|
T Consensus       144 ~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~  222 (416)
T 2pm9_A          144 NKCTESPS-NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW  222 (416)
T ss_dssp             TTTSSCTT-TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEE
T ss_pred             CCCccccc-cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEE
Confidence            33220000 0000011233689999999999 55 4 9999999999999999999999888864       34555999


Q ss_pred             ecCC-CEEE-EEcCC---eEEEEecCCce---eeee-ccCCccceeeeecc-CCCeEEEecCCCcEEEEEcCCcceeeec
Q 022303          160 DFDE-SKIV-GLIGT---RICIWRRNGLR---SVFP-SREGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSRKCSQII  229 (299)
Q Consensus       160 ~~~~-~~l~-~~~d~---~i~v~d~~~~~---~~~~-~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~  229 (299)
                      +|++ .+++ ++.|+   .|++||+++..   ..+. .+...+. .++|++ ++..+++++.|+.|++||+++++.+..+
T Consensus       223 ~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~  301 (416)
T 2pm9_A          223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGIL-SLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF  301 (416)
T ss_dssp             CSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEE-EEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE
T ss_pred             CCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCcee-EEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee
Confidence            9997 5677 88888   99999998753   2333 3444433 457888 7788999999999999999999999999


Q ss_pred             cccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCceEEEeec-----------------------------------
Q 022303          230 RMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRS-----------------------------------  272 (299)
Q Consensus       230 ~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------------------------------  272 (299)
                      ..|...|.+++|+|+  .+|++++.|+.|++||+.+++.......                                   
T Consensus       302 ~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (416)
T 2pm9_A          302 PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTW  381 (416)
T ss_dssp             ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCST
T ss_pred             cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcc
Confidence            999999999999997  6999999999999999987653322111                                   


Q ss_pred             cCCCCcEEEEEccCCCCeEEeeec
Q 022303          273 TDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       273 ~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +..  ++.+++|+|+|++|++++.
T Consensus       382 ~~~--~~~~~~~s~dg~~la~~~~  403 (416)
T 2pm9_A          382 YGE--PSPAAHWAFGGKLVQITPD  403 (416)
T ss_dssp             TCC--CSCCCEEETTTEEECBCTT
T ss_pred             ccC--CccceEEeeCCeEEEEeCC
Confidence            233  7789999999999999874

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.96  E-value=4.2e-26  Score=189.50  Aligned_cols=191  Identities=13%  Similarity=0.033  Sum_probs=158.2

Q ss_pred             eEEeeccccCeeEEEe-cC-C-EEEEEeCCCcEEEEecCCc-----eeEEEecCCCceeE-EEEecCCCEEE-EEcCCeE
Q 022303          105 IDQWKAHSVGVDQCRM-KR-G-LILTGVGDKVMRLWSLEGY-----KCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRI  174 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~-~-~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i  174 (299)
                      ..+|+||++.|++++| |+ + +|+||+.|++|++||+.+.     .+...+.+|...+. ++|+|++++++ ++.|+.|
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence            3468999999999999 54 3 9999999999999998754     35667777766555 99999999999 9999999


Q ss_pred             EEEecCCceeeee-ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcce-eeeccccCCceeEEEeCCC---CeEEE
Q 022303          175 CIWRRNGLRSVFP-SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED---QLIIS  249 (299)
Q Consensus       175 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~---~~l~~  249 (299)
                      ++|+......... ...........+.+.+..+++++.|+.+++||...... ......|...+..++|+++   .++++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s  190 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS  190 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred             eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE
Confidence            9999988753322 22222333557788888899999999999999986544 3445578899999999875   57899


Q ss_pred             EeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          250 GSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       250 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ++.|+.|++||+++++++..+.+|..  +|++++|+|++++|++|+.-
T Consensus       191 ~~~d~~i~i~d~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~s~D  236 (340)
T 4aow_A          191 CGWDKLVKVWNLANCKLKTNHIGHTG--YLNTVTVSPDGSLCASGGKD  236 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETT
T ss_pred             EcCCCEEEEEECCCCceeeEecCCCC--cEEEEEECCCCCEEEEEeCC
Confidence            99999999999999999999999988  99999999999999999853

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=8.7e-28  Score=197.84  Aligned_cols=246  Identities=13%  Similarity=0.115  Sum_probs=194.8

Q ss_pred             CcchhccCcHHHHHHHh--hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccce
Q 022303           20 PRATIESLNGDIICMIF--SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFA   97 (299)
Q Consensus        20 ~~~~~~~~~~~~~~~i~--~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (299)
                      .+.++++|+.+++..+.  .+.+|...|++++|+|+++++++                ...|+.+++|..  ..      
T Consensus        43 ~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~s----------------gs~Dg~v~iw~~--~~------   98 (318)
T 4ggc_A           43 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV----------------GTSSAEVQLWDV--QQ------   98 (318)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEE----------------EETTSEEEEEET--TT------
T ss_pred             eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEE----------------EECCCcEEEeec--CC------
Confidence            46789999999876444  44478889999999999999987                346788888832  22      


Q ss_pred             eecCceeeEEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCc-eeEEEecCCCceeE-EEEecCCCEEE-EEcCCeE
Q 022303           98 LEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGY-KCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRI  174 (299)
Q Consensus        98 l~~g~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i  174 (299)
                          ...++.+.+|...+.++.+.+..+++++.++.+++|+..+. ..+..+..|...+. +.+.+++++++ ++.|+.|
T Consensus        99 ----~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i  174 (318)
T 4ggc_A           99 ----QKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV  174 (318)
T ss_dssp             ----TEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ----ceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcce
Confidence                22355668999999988887779999999999999998865 45566677665554 99999999999 9999999


Q ss_pred             EEEecCCcee------eeeccCCccceeeeeccCCCe---EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-
Q 022303          175 CIWRRNGLRS------VFPSREGTFMKGLCMRYFDPE---AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-  244 (299)
Q Consensus       175 ~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~---l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-  244 (299)
                      ++||+++++.      ....+.+.+. ..++.+.+..   +++++.++.|++||.+........ .+...+..+.++|+ 
T Consensus       175 ~iwd~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~  252 (318)
T 4ggc_A          175 NVWPSAPGEGGWVPLQTFTQHQGAVK-AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHY  252 (318)
T ss_dssp             EEEESSCBTTBSCCSEEECCCCSCEE-EEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTT
T ss_pred             eEEECCCCcccccceeeecccCCceE-EEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccc
Confidence            9999987641      1222333333 3466666665   346788999999999988776665 56777999999998 


Q ss_pred             CeEEEE--eCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          245 QLIISG--SSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       245 ~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ..++++  +.|+.|++||+++++++.++.+|..  +|++++|+|+|++|++||.-
T Consensus       253 ~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~s~D  305 (318)
T 4ggc_A          253 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAAD  305 (318)
T ss_dssp             TEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETT
T ss_pred             cceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecC
Confidence            666654  4799999999999999999999988  99999999999999999864

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.96  E-value=2.1e-27  Score=196.10  Aligned_cols=188  Identities=11%  Similarity=0.140  Sum_probs=148.6

Q ss_pred             EeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCce--eEEEecCCCceeE-EEEec--CCCEEE-EEcCCeEEEEe
Q 022303          107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK--CVEEYSLPNAASL-VDFDF--DESKIV-GLIGTRICIWR  178 (299)
Q Consensus       107 ~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~-~~~~~--~~~~l~-~~~d~~i~v~d  178 (299)
                      .+.+|.+.|+++.| +++ +|++|+.|++|++||+.+++  .+..+.+|...+. ++|++  ++++|+ ++.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            34799999999999 555 99999999999999998775  4667888865554 99975  478888 99999999999


Q ss_pred             cCCce----eeeeccCCccceeeeeccC--CCeEEEecCCCcEEEEEcCCcce---eeeccccCCceeEEEeCCC-----
Q 022303          179 RNGLR----SVFPSREGTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSRKC---SQIIRMHCAPVTSLSLSED-----  244 (299)
Q Consensus       179 ~~~~~----~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~-----  244 (299)
                      ++++.    ..+..|...+. .++|+|+  +..+++|+.|+.|++||++.+..   ...+..|...|.+++|+|+     
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  166 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVN-SVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS  166 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCC-EEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred             CCCCcceEEEEccCCCCceE-EEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence            98753    23344555544 4588887  56799999999999999987532   3455688899999999986     


Q ss_pred             -------------CeEEEEeCCCcEEEEeCCCC---ceEEEeeccCCCCcEEEEEccCCC----CeEEeeecc
Q 022303          245 -------------QLIISGSSLGSIAISGLSSD---QRVATLRSTDCTGHIICLMYPQFL----HMLFFLCFL  297 (299)
Q Consensus       245 -------------~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~i~~~~~s~~g----~~l~s~s~~  297 (299)
                                   ++|++|+.|+.|++||++.+   +++..+.+|..  .|++++|+|++    ++|++|+.-
T Consensus       167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~--~V~~v~~sp~~~~~~~~las~s~D  237 (316)
T 3bg1_A          167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD--WVRDVAWAPSIGLPTSTIASCSQD  237 (316)
T ss_dssp             ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS--CEEEEECCCCSSCSCCEEEEEETT
T ss_pred             ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC--ceEEEEecCCCCCCCceEEEEcCC
Confidence                         48999999999999999755   46777888887  89999999987    789999854

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=1.8e-28  Score=211.24  Aligned_cols=229  Identities=11%  Similarity=0.026  Sum_probs=170.5

Q ss_pred             CccchhhHHHhhhh-HHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEE
Q 022303           40 GFFDLVRCSAVCKS-WNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQC  118 (299)
Q Consensus        40 ~h~~~v~~~~~~~~-~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~  118 (299)
                      +|...|+|++|+|. .+.||+                ...|+.+++|..  ......        ....+.+|.+.|+++
T Consensus       117 ~~~~~V~~l~~~P~~~~~las----------------Gs~dg~i~lWd~--~~~~~~--------~~~~~~gH~~~V~~l  170 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAV----------------GSKGGDIMLWNF--GIKDKP--------TFIKGIGAGGSITGL  170 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEE----------------EETTSCEEEECS--SCCSCC--------EEECCCSSSCCCCEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEE----------------EeCCCEEEEEEC--CCCCce--------eEEEccCCCCCEEEE
Confidence            46667888888884 456665                336777888832  222111        123457899999999


Q ss_pred             Ee-c-CC-EEEEEeCCCcEEEEecCCceeEEEecCCC---ceeEEEEecCCCEEE-EEcCCeEEEEecCCce-eeeeccC
Q 022303          119 RM-K-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN---AASLVDFDFDESKIV-GLIGTRICIWRRNGLR-SVFPSRE  190 (299)
Q Consensus       119 ~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~-~~~~~~~  190 (299)
                      .| | ++ +|++|+.||+|++||++++........+.   .+..++|+|++++|+ ++.||.|++||+++.. ..+..|.
T Consensus       171 ~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~  250 (435)
T 4e54_B          171 KFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHK  250 (435)
T ss_dssp             EECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCS
T ss_pred             EEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEeccc
Confidence            99 4 44 99999999999999998765544443332   234599999999999 9999999999998654 3445555


Q ss_pred             CccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeec---cccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc
Q 022303          191 GTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQII---RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ  265 (299)
Q Consensus       191 ~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~  265 (299)
                      ..+. .++++|.++. +++++.|+.|++||+++.+....+   ..|...|++++|+|+ ++|++++.||.|++||+++++
T Consensus       251 ~~v~-~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~  329 (435)
T 4e54_B          251 KKVT-HVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD  329 (435)
T ss_dssp             SCEE-EEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred             ceEE-eeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence            5544 4578888775 778999999999999887654433   478999999999999 999999999999999999998


Q ss_pred             eEEEeeccCCC----CcEEEEEccCCCCeEEeee
Q 022303          266 RVATLRSTDCT----GHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       266 ~~~~~~~~~~~----~~i~~~~~s~~g~~l~s~s  295 (299)
                      +...+..|...    ..+....|+|++.++++++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (435)
T 4e54_B          330 CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGR  363 (435)
T ss_dssp             SEEEECCCCCCCCSSSCCCBCEECSSSSCEEEEC
T ss_pred             cceEEecccccccccceeEEEEEcCCCCEEEEEE
Confidence            88777665431    1234567788887777664

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.96  E-value=3.3e-28  Score=210.12  Aligned_cols=188  Identities=18%  Similarity=0.267  Sum_probs=158.0

Q ss_pred             eEEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCc
Q 022303          105 IDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGL  182 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~  182 (299)
                      +..+.+|...|.++.+.+.++++|+.||.|++||+.+++++..+..|...+. +++  ++..++ ++.|+.|++||++++
T Consensus       232 ~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~  309 (445)
T 2ovr_B          232 LHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG  309 (445)
T ss_dssp             EEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC
T ss_pred             EEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC
Confidence            5667899999999999666999999999999999999999999987765544 777  778888 999999999999887


Q ss_pred             eeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc---cCCceeEEEeCCCCeEEEEeCCCcEEEE
Q 022303          183 RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM---HCAPVTSLSLSEDQLIISGSSLGSIAIS  259 (299)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~i~~~~~~~~~~l~~~~~dg~i~iw  259 (299)
                      +..... .++...+.++.+.+..+++|+.||.|++||+++++.+..+..   |...|.+++|++ +++++|+.||.|++|
T Consensus       310 ~~~~~~-~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg~v~iw  387 (445)
T 2ovr_B          310 NCIHTL-TGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLW  387 (445)
T ss_dssp             CEEEEE-CCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS-SEEEEEETTSEEEEE
T ss_pred             CEEEEE-cCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC-CEEEEEeCCCeEEEE
Confidence            633222 122233457777888999999999999999999999888875   888999999964 689999999999999


Q ss_pred             eCCCCceEEEee-----ccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          260 GLSSDQRVATLR-----STDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       260 d~~~~~~~~~~~-----~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      |+++++.+..+.     .+..  .|++++|+|++.+|++|+.-+
T Consensus       388 d~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~la~~~~dg  429 (445)
T 2ovr_B          388 DLKTGEFIRNLVTLESGGSGG--VVWRIRASNTKLVCAVGSRNG  429 (445)
T ss_dssp             ETTTCCEEEEEEECTTGGGTC--EEEEEEECSSEEEEEEECSSS
T ss_pred             ECCCCceeeeeeccccCCCCc--eEEEEEecCCEEEEEEcccCC
Confidence            999999998883     4555  899999999999999988543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.96  E-value=5.1e-28  Score=223.58  Aligned_cols=230  Identities=13%  Similarity=0.128  Sum_probs=192.4

Q ss_pred             hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCee
Q 022303           37 SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVD  116 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~  116 (299)
                      .+.+|.+.|++++|+|+++++++                ...++.+++|..  .          ....+..+.+|.++|.
T Consensus         8 ~~~~h~~~v~~i~~sp~~~~la~----------------~~~~g~v~iwd~--~----------~~~~~~~~~~~~~~v~   59 (814)
T 3mkq_A            8 TFSNRSDRVKGIDFHPTEPWVLT----------------TLYSGRVEIWNY--E----------TQVEVRSIQVTETPVR   59 (814)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEE----------------EETTSEEEEEET--T----------TTEEEEEEECCSSCEE
T ss_pred             eeecCCCceEEEEECCCCCEEEE----------------EeCCCEEEEEEC--C----------CCceEEEEecCCCcEE
Confidence            45689999999999999999987                224567777732  1          1233556789999999


Q ss_pred             EEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEecCCce---eeeecc
Q 022303          117 QCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWRRNGLR---SVFPSR  189 (299)
Q Consensus       117 ~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~~~~---~~~~~~  189 (299)
                      ++.| +++ +|++|+.||.|++||+.+++.+..+..|...+ .++|+|+++.++ ++.||.|++||+.+..   ..+..+
T Consensus        60 ~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  139 (814)
T 3mkq_A           60 AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH  139 (814)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECC
T ss_pred             EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCC
Confidence            9999 555 99999999999999999999999998776555 599999999998 9999999999998763   334445


Q ss_pred             CCccceeeeecc-CCCeEEEecCCCcEEEEEcCCcceeeeccccC-CceeEEEeCC--C-CeEEEEeCCCcEEEEeCCCC
Q 022303          190 EGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-APVTSLSLSE--D-QLIISGSSLGSIAISGLSSD  264 (299)
Q Consensus       190 ~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~--~-~~l~~~~~dg~i~iwd~~~~  264 (299)
                      ...+. .++|+| ++..+++++.|+.|++||+.+++....+..+. ..+.+++|+|  + .++++++.||.|++||++++
T Consensus       140 ~~~v~-~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  218 (814)
T 3mkq_A          140 EHFVM-CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK  218 (814)
T ss_dssp             SSCEE-EEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred             CCcEE-EEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            44433 457888 67779999999999999999888777766544 8899999998  7 89999999999999999999


Q ss_pred             ceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          265 QRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       265 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +.+..+..|..  .|.+++|+|+|++|++++.-
T Consensus       219 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d  249 (814)
T 3mkq_A          219 SCVATLEGHMS--NVSFAVFHPTLPIIISGSED  249 (814)
T ss_dssp             EEEEEEECCSS--CEEEEEECSSSSEEEEEETT
T ss_pred             cEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCC
Confidence            99999998887  89999999999999999853

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=3.3e-29  Score=208.51  Aligned_cols=248  Identities=12%  Similarity=0.102  Sum_probs=197.0

Q ss_pred             CCCCCcchhccCcHHHHH---HHhhccCccchhhHHHhhhhHH-HHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhh-h
Q 022303           16 RSSKPRATIESLNGDIIC---MIFSSLGFFDLVRCSAVCKSWN-AIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEEL-A   90 (299)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~---~i~~~~~h~~~v~~~~~~~~~~-~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~-~   90 (299)
                      ..+..+..+.+|+.+...   .+....+|...|.+++|+|+++ ++++                ...|+.+++|  ++ .
T Consensus        27 ~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~----------------~~~dg~i~~w--d~~~   88 (342)
T 1yfq_A           27 LITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV----------------GTVQGEILKV--DLIG   88 (342)
T ss_dssp             EEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEE----------------EETTSCEEEE--CSSS
T ss_pred             EEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEE----------------EcCCCeEEEE--Eecc
Confidence            344466788899877654   2445558999999999999998 7876                2245667777  32 2


Q ss_pred             hccccceeecCceeeEEeec--cccCeeEEEe-cCCEEEEEeCCCcEEEEecCC---------ceeEEEecCCCceeEEE
Q 022303           91 MKHHRFALEEGRIDIDQWKA--HSVGVDQCRM-KRGLILTGVGDKVMRLWSLEG---------YKCVEEYSLPNAASLVD  158 (299)
Q Consensus        91 ~~~~~~~l~~g~~~~~~~~~--h~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~  158 (299)
                      ..           ....+.+  |...|.++.| ++++|++++.|+.|++||+.+         ++++..+.....+..++
T Consensus        89 ~~-----------~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  157 (342)
T 1yfq_A           89 SP-----------SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             SS-----------SEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred             CC-----------ceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEE
Confidence            11           1245578  9999999999 634999999999999999988         77777777566667799


Q ss_pred             EecCCCEEEEEcCCeEEEEecCC-cee----eeeccCCccceeeeecc-CCCeEEEecCCCcEEEEEcCCc------cee
Q 022303          159 FDFDESKIVGLIGTRICIWRRNG-LRS----VFPSREGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSR------KCS  226 (299)
Q Consensus       159 ~~~~~~~l~~~~d~~i~v~d~~~-~~~----~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~------~~~  226 (299)
                      |++++ +++++.++.|++||+++ ...    ....+.... ..+++++ ++..+++++.||.|++||++..      +..
T Consensus       158 ~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i-~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~  235 (342)
T 1yfq_A          158 TNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQI-RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             ECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCE-EEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             ecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCce-eEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence            99887 44499999999999988 432    222233333 3568888 8899999999999999999876      677


Q ss_pred             eeccccCC---------ceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeecc-CCCCcEEEEEccCCCCeEEeee
Q 022303          227 QIIRMHCA---------PVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRST-DCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       227 ~~~~~~~~---------~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ..+..|..         .|.+++|+|+ ++|++++.||.|++||+++++++..+..| ..  +|.+++  |+|++|++|+
T Consensus       236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~--~v~~~~--~~~~~l~s~s  311 (342)
T 1yfq_A          236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED--SVVKIA--CSDNILCLAT  311 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS--EEEEEE--ECSSEEEEEE
T ss_pred             eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC--CceEec--CCCCeEEEEe
Confidence            77777755         9999999999 99999999999999999999999999988 66  899999  9999999998


Q ss_pred             ccc
Q 022303          296 FLP  298 (299)
Q Consensus       296 ~~~  298 (299)
                      ..+
T Consensus       312 ~Dg  314 (342)
T 1yfq_A          312 SDD  314 (342)
T ss_dssp             ECT
T ss_pred             cCC
Confidence            654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=1.2e-29  Score=244.25  Aligned_cols=277  Identities=13%  Similarity=0.101  Sum_probs=215.1

Q ss_pred             CCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhcCCCCC-------------
Q 022303           16 RSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLHGFSNT-------------   77 (299)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~~~~~~-------------   77 (299)
                      ..+..+..+..|+.+....+..+.+|.+.|.+++|+|+++.+++     .+.+|+..-.........             
T Consensus       856 ~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  935 (1249)
T 3sfz_A          856 VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENET  935 (1249)
T ss_dssp             EEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEE
T ss_pred             EEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCc
Confidence            33445677899999988888888899999999999999999887     466777643211100000             


Q ss_pred             ------CCch--------------hhhhhhhhhhccccceeecCcee-------------eEEeeccccCeeEEEe-cCC
Q 022303           78 ------SGSS--------------MRLHLEELAMKHHRFALEEGRID-------------IDQWKAHSVGVDQCRM-KRG  123 (299)
Q Consensus        78 ------~d~~--------------~~~~~~~~~~~~~~~~l~~g~~~-------------~~~~~~h~~~i~~~~~-~~~  123 (299)
                            ....              ....+.++.++|++..++.|..+             ...+.+|...|.++.| +++
T Consensus       936 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg 1015 (1249)
T 3sfz_A          936 MVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG 1015 (1249)
T ss_dssp             EEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS
T ss_pred             EEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC
Confidence                  0000              00012244566666665544332             4556789999999999 666


Q ss_pred             -EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCce--eeeeccCCccceeeeec
Q 022303          124 -LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMR  200 (299)
Q Consensus       124 -~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~  200 (299)
                       +|++++.||.|++||+.+++..........+..+.+++++.+++++.|+.|++||+.+++  ..+..+.+.+. .++++
T Consensus      1016 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~-~~~~s 1094 (1249)
T 3sfz_A         1016 KTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVL-SCAIS 1094 (1249)
T ss_dssp             SCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCC-CEEEC
T ss_pred             CEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEE-EEEEC
Confidence             999999999999999999988765544555666999998877679999999999998775  44555665554 46899


Q ss_pred             cCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEe---------
Q 022303          201 YFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATL---------  270 (299)
Q Consensus       201 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~---------  270 (299)
                      +++..+++++.|+.|++||+.+++.+..+.+|...|++++|+|+ ++|++|+.||.|++||+.+++.+..+         
T Consensus      1095 ~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1174 (1249)
T 3sfz_A         1095 SDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT 1174 (1249)
T ss_dssp             SSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-----
T ss_pred             CCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccc
Confidence            99999999999999999999999999999999999999999999 99999999999999999999877665         


Q ss_pred             eccCCCCcEEEEEccCCCCeEEeee
Q 022303          271 RSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       271 ~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ..|..  .|++++|+|+|++|++++
T Consensus      1175 ~~~~~--~v~~l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A         1175 ATHGG--WVTDVCFSPDSKTLVSAG 1197 (1249)
T ss_dssp             --CCS--CCCEEEECTTSSCEEEES
T ss_pred             cccCc--eEEEEEECCCCCEEEECC
Confidence            45555  899999999999999875

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.8e-28  Score=222.55  Aligned_cols=234  Identities=11%  Similarity=0.027  Sum_probs=181.9

Q ss_pred             hhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCe
Q 022303           36 FSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGV  115 (299)
Q Consensus        36 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i  115 (299)
                      ..+.+|.+.|++++|+|+++++++                ...|+.+++|..  ..        .....+..+.+|.++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~lat----------------g~~dg~I~vwd~--~~--------~~~~~~~~l~~h~~~V   56 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLAT----------------CSSDKTIKIFEV--EG--------ETHKLIDTLTGHEGPV   56 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEE----------------EETTTEEEEEEE--ET--------TEEEEEEEECCCSSCE
T ss_pred             eecccCcceeEEEEECCCCCeEEE----------------EECCCcEEEEec--CC--------CCCccceeccCCcCce
Confidence            345689999999999999999987                235677888832  10        0112356778999999


Q ss_pred             eEEEe-cC--C-EEEEEeCCCcEEEEecCCce--eEEEecCCCcee-EEEEecC--CCEEE-EEcCCeEEEEecCCce--
Q 022303          116 DQCRM-KR--G-LILTGVGDKVMRLWSLEGYK--CVEEYSLPNAAS-LVDFDFD--ESKIV-GLIGTRICIWRRNGLR--  183 (299)
Q Consensus       116 ~~~~~-~~--~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~-~~~~~~~--~~~l~-~~~d~~i~v~d~~~~~--  183 (299)
                      +++.| ++  + +|++|+.||.|++||+.+++  .+..+..|...+ .++|+|+  ++.++ ++.||.|++||+++..  
T Consensus        57 ~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~  136 (753)
T 3jro_A           57 WRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT  136 (753)
T ss_dssp             EEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC
T ss_pred             EEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc
Confidence            99999 54  5 99999999999999999987  666777665544 5999999  88888 9999999999998762  


Q ss_pred             --eeeeccCCccceeeeecc-------------CCCeEEEecCCCcEEEEEcCCc----ceeeeccccCCceeEEEeCCC
Q 022303          184 --SVFPSREGTFMKGLCMRY-------------FDPEAVVGCEDGTARVFDMYSR----KCSQIIRMHCAPVTSLSLSED  244 (299)
Q Consensus       184 --~~~~~~~~~~~~~~~~~~-------------~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~  244 (299)
                        .....+...+. .+++++             ++..+++|+.||.|++||++++    .....+..|..+|++++|+|+
T Consensus       137 ~~~~~~~~~~~v~-~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  215 (753)
T 3jro_A          137 SPIIIDAHAIGVN-SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT  215 (753)
T ss_dssp             CCEEEECCSSCEE-EEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred             ceeEeecCCCceE-EEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccC
Confidence              33344444433 457777             4777999999999999999876    455677789999999999987


Q ss_pred             ----CeEEEEeCCCcEEEEeCCCCc-----eEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          245 ----QLIISGSSLGSIAISGLSSDQ-----RVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       245 ----~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                          .++++|+.||.|++||+++++     .+.....+..  .|++++|+|+|++|++|+.-+
T Consensus       216 ~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~s~s~Dg  276 (753)
T 3jro_A          216 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD--VLWRASWSLSGNVLALSGGDN  276 (753)
T ss_dssp             CSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSS--CCCCEEECTTTCCEEEECSSS
T ss_pred             CCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCC--ceEEEEEcCCCCEEEEEcCCC
Confidence                589999999999999998864     2233333555  899999999999999987643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.95  E-value=5.6e-28  Score=209.64  Aligned_cols=246  Identities=14%  Similarity=0.143  Sum_probs=197.1

Q ss_pred             CCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccc
Q 022303           15 KRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHH   94 (299)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (299)
                      ...+..+.++++|+.+....+..+.+|.+.|.++++++++ .+++                ...|+.+++|  ++..   
T Consensus       135 l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s----------------~s~dg~i~vw--d~~~---  192 (464)
T 3v7d_B          135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVS----------------GSTDRTVRVW--DIKK---  192 (464)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEE----------------EETTSCEEEE--ETTT---
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEE----------------EeCCCCEEEE--ECCC---
Confidence            3344567889999999888888888999999999999988 5554                2367888888  3222   


Q ss_pred             cceeecCceeeEEeeccccCeeEEEe---cCC-EEEEEeCCCcEEEEecCCcee-----------------------EEE
Q 022303           95 RFALEEGRIDIDQWKAHSVGVDQCRM---KRG-LILTGVGDKVMRLWSLEGYKC-----------------------VEE  147 (299)
Q Consensus        95 ~~~l~~g~~~~~~~~~h~~~i~~~~~---~~~-~l~s~~~dg~i~iwd~~~~~~-----------------------~~~  147 (299)
                             ...+..+.+|.+.|.++.+   +++ ++++|+.||+|++||+.+++.                       +..
T Consensus       193 -------~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          193 -------GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             -------TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             -------CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence                   2235567899999999988   244 999999999999999987653                       334


Q ss_pred             ecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCcee--eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcc
Q 022303          148 YSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK  224 (299)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  224 (299)
                      +..|...+ .+++++++.++ ++.|+.|++||+++.+.  .+..+...+. .++++++++.+++|+.|+.|++||+++++
T Consensus       266 ~~~~~~~v-~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  343 (464)
T 3v7d_B          266 LRGHMASV-RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY-STIYDHERKRCISASMDTTIRIWDLENGE  343 (464)
T ss_dssp             ECCCSSCE-EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             ccCccceE-EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence            44444333 34477888888 99999999999998763  3444554443 46888999999999999999999999999


Q ss_pred             eeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          225 CSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       225 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      .+..+..|...|.++++++ .++++++.||.|++||+++++....... ..  .+..++|+|++++|++|+
T Consensus       344 ~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~--~~~~~~~~~~~~~l~~~~  410 (464)
T 3v7d_B          344 LMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSYHH-TN--LSAITTFYVSDNILVSGS  410 (464)
T ss_dssp             EEEEECCCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEEC-TT--CCCEEEEEECSSEEEEEE
T ss_pred             EEEEEeCCCCcEEEEEEcC-CEEEEEeCCCcEEEEECCCCceeeeecC-CC--CccEEEEEeCCCEEEEec
Confidence            9999999999999999974 6899999999999999999887666643 33  688889999999999987

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.95  E-value=4.6e-27  Score=202.44  Aligned_cols=188  Identities=13%  Similarity=0.047  Sum_probs=150.4

Q ss_pred             EeeccccCeeEEEe-c-CC-EEEEEeCCCcEEEEecCCceeEE--EecCCCc-eeEEEEec-CCCEEE-EEcCCeEEEEe
Q 022303          107 QWKAHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEGYKCVE--EYSLPNA-ASLVDFDF-DESKIV-GLIGTRICIWR  178 (299)
Q Consensus       107 ~~~~h~~~i~~~~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~-~~~~~~~~-~~~~l~-~~~d~~i~v~d  178 (299)
                      ...+|...|++++| | ++ +|++|+.||+|+|||+.+++...  .+.+|.. +..++|+| ++++|+ ++.|++|++||
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            44689999999999 4 33 89999999999999998776443  4445654 45599998 678888 99999999999


Q ss_pred             cCCcee-eeeccCCcc--ceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC--CeEEEEeCC
Q 022303          179 RNGLRS-VFPSREGTF--MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSSL  253 (299)
Q Consensus       179 ~~~~~~-~~~~~~~~~--~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~d  253 (299)
                      +++... .+.......  ...+++++++..+++|+.||.|++||++ ++.+..+..|...|.+++|+|+  .++++|+.|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d  272 (435)
T 4e54_B          194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVD  272 (435)
T ss_dssp             TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred             ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence            987642 222222221  2246788899999999999999999997 5667778899999999999997  588899999


Q ss_pred             CcEEEEeCCCCceEEEe---eccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          254 GSIAISGLSSDQRVATL---RSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       254 g~i~iwd~~~~~~~~~~---~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +.|++||+++++....+   .+|..  +|++++|+|+|++|++|+.-
T Consensus       273 ~~v~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~spdg~~l~s~~~D  317 (435)
T 4e54_B          273 QTVKIWDLRQVRGKASFLYSLPHRH--PVNAACFSPDGARLLTTDQK  317 (435)
T ss_dssp             SBCCEEETTTCCSSSCCSBCCBCSS--CEEECCBCTTSSEEEEEESS
T ss_pred             ceeeEEecccccccceEEEeeeccc--cccceeECCCCCeeEEEcCC
Confidence            99999999887654333   45666  89999999999999999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.95  E-value=5.2e-26  Score=206.86  Aligned_cols=190  Identities=15%  Similarity=0.086  Sum_probs=160.7

Q ss_pred             eEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCC-----ceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEG-----YKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRI  174 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i  174 (299)
                      ...+++|++.|+++++ +++  +|+||+.|++|++||+.+     +.....+.+|...+. ++|+|++++|+ ++.|+.|
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL  454 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence            4567999999999999 333  899999999999999875     345667777866554 99999999999 9999999


Q ss_pred             EEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeee---ccccCCceeEEEeCCC---Ce
Q 022303          175 CIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI---IRMHCAPVTSLSLSED---QL  246 (299)
Q Consensus       175 ~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~~~~~i~~~~~~~~---~~  246 (299)
                      ++||+.++.  ..+..|.+.+. .+++++++..+++++.|+.|++||.........   ...|...|.+++|+|+   ..
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  533 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVL-SVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT  533 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEE-EEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred             EEEECCCCcceeEEeCCCCCEE-EEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence            999998875  34556666654 468999999999999999999999875433222   2368889999999987   47


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          247 IISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       247 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +++++.|++|++||++++++...+.+|..  .|++++|+|+|++|++|+.-
T Consensus       534 l~s~s~d~~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~sg~~D  582 (694)
T 3dm0_A          534 IVSASWDKTVKVWNLSNCKLRSTLAGHTG--YVSTVAVSPDGSLCASGGKD  582 (694)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETT
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEeCC
Confidence            99999999999999999999999999988  99999999999999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.95  E-value=5.8e-28  Score=208.29  Aligned_cols=239  Identities=11%  Similarity=0.160  Sum_probs=177.2

Q ss_pred             cCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCce-eeEEeeccc-----
Q 022303           39 LGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRI-DIDQWKAHS-----  112 (299)
Q Consensus        39 ~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~-~~~~~~~h~-----  112 (299)
                      +.|.+.|.|++|+|++++|++                ...|+.+++|..  ...........+.. ....+++|.     
T Consensus        25 ~~~~~~V~~v~~s~~g~~la~----------------g~~dg~v~iw~~--~~~~~~~~~~~~~~~~~~~~~~h~~~~~~   86 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGELLAT----------------GDKGGRVVIFQQ--EQENKIQSHSRGEYNVYSTFQSHEPEFDY   86 (447)
T ss_dssp             CCGGGSEEEEEECSSSSEEEE----------------EETTSEEEEEEE--CC-----CCCCCCEEEEEEEECCCCEEEG
T ss_pred             ccccCcEEEEEECCCCCEEEE----------------EcCCCeEEEEEe--cCCCCCCcccccceeEecccccccccccc
Confidence            467899999999999999997                235677777732  22111000011111 256778998     


Q ss_pred             -------cCeeEEEe-cC---CEEEEEeCCCcEEEEecCCceeE------------------------------------
Q 022303          113 -------VGVDQCRM-KR---GLILTGVGDKVMRLWSLEGYKCV------------------------------------  145 (299)
Q Consensus       113 -------~~i~~~~~-~~---~~l~s~~~dg~i~iwd~~~~~~~------------------------------------  145 (299)
                             +.|+++.| ++   .+|++++.|++|++||+.+++..                                    
T Consensus        87 ~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  166 (447)
T 3dw8_B           87 LKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEA  166 (447)
T ss_dssp             GGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEE
T ss_pred             cccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeec
Confidence                   88999999 54   38999999999999999875442                                    


Q ss_pred             ---EEe-cCCCc-eeEEEEecCCCEEEEEcCCeEEEEecCCceee----------eeccCCccceeeeeccCC-CeEEEe
Q 022303          146 ---EEY-SLPNA-ASLVDFDFDESKIVGLIGTRICIWRRNGLRSV----------FPSREGTFMKGLCMRYFD-PEAVVG  209 (299)
Q Consensus       146 ---~~~-~~~~~-~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~----------~~~~~~~~~~~~~~~~~~-~~l~s~  209 (299)
                         ..+ ..|.. +..++|+|++++++++.|+.|++||+++....          +..+...+. .++|+|++ ..+++|
T Consensus       167 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~  245 (447)
T 3dw8_B          167 SPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT-AAEFHPNSCNTFVYS  245 (447)
T ss_dssp             EEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEE-EEEECSSCTTEEEEE
T ss_pred             cceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceE-EEEECCCCCcEEEEE
Confidence               122 34544 45599999999999338999999999854322          223444333 56888988 789999


Q ss_pred             cCCCcEEEEEcCCcce----eeeccccCC------------ceeEEEeCCC-CeEEEEeCCCcEEEEeCCC-CceEEEee
Q 022303          210 CEDGTARVFDMYSRKC----SQIIRMHCA------------PVTSLSLSED-QLIISGSSLGSIAISGLSS-DQRVATLR  271 (299)
Q Consensus       210 ~~d~~i~iwd~~~~~~----~~~~~~~~~------------~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~~  271 (299)
                      +.|+.|++||+++++.    +..+..|..            .|.+++|+|+ ++|++++. +.|++||+++ ++++..+.
T Consensus       246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~  324 (447)
T 3dw8_B          246 SSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ  324 (447)
T ss_dssp             ETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE
T ss_pred             eCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee
Confidence            9999999999998886    677777765            8999999999 99999998 9999999997 88888888


Q ss_pred             ccCCCC-------------cEEEEEccCCCCeEEeeecc
Q 022303          272 STDCTG-------------HIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       272 ~~~~~~-------------~i~~~~~s~~g~~l~s~s~~  297 (299)
                      .|....             .+..++|+|+|++|++|+.-
T Consensus       325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~d  363 (447)
T 3dw8_B          325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYN  363 (447)
T ss_dssp             SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECST
T ss_pred             ccccccccccccccccccccceEEEECCCCCEEEEeccC
Confidence            775310             13349999999999999854

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.95  E-value=9.5e-29  Score=212.95  Aligned_cols=241  Identities=20%  Similarity=0.260  Sum_probs=195.2

Q ss_pred             CCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccc
Q 022303           17 SSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRF   96 (299)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (299)
                      .+..+..+++|+.+....+..+.+|.+.|.++++  +++.+++                ...|+.+++|..  ..     
T Consensus       148 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s----------------g~~dg~i~vwd~--~~-----  202 (435)
T 1p22_A          148 SGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIIT----------------GSSDSTVRVWDV--NT-----  202 (435)
T ss_dssp             EEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEE----------------EETTSCEEEEES--SS-----
T ss_pred             EEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEE----------------EcCCCeEEEEEC--CC-----
Confidence            3345678999998888777788899999999888  5666665                236778888832  21     


Q ss_pred             eeecCceeeEEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCceeE---EEecCCCceeE-EEEecCCCEEE-EEcC
Q 022303           97 ALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCV---EEYSLPNAASL-VDFDFDESKIV-GLIG  171 (299)
Q Consensus        97 ~l~~g~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~-~~~~~~~~~l~-~~~d  171 (299)
                           ...+..+.+|...|.++.+.++++++|+.||.|++||+.+++..   ..+..|...+. +++  +++.++ ++.|
T Consensus       203 -----~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d  275 (435)
T 1p22_A          203 -----GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD  275 (435)
T ss_dssp             -----CCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred             -----CcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence                 12356678999999999998789999999999999999987655   55666655444 777  677888 9999


Q ss_pred             CeEEEEecCCcee--eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEE
Q 022303          172 TRICIWRRNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIIS  249 (299)
Q Consensus       172 ~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~  249 (299)
                      +.|++||+++...  .+..+...   +.++.+++..+++|+.||.|++||+++++.+..+..|...|.++++ .+.+|++
T Consensus       276 g~i~vwd~~~~~~~~~~~~~~~~---v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-~~~~l~s  351 (435)
T 1p22_A          276 RTIKVWNTSTCEFVRTLNGHKRG---IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRIVS  351 (435)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSC---EEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC-CSSEEEE
T ss_pred             CeEEEEECCcCcEEEEEcCCCCc---EEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe-cCCEEEE
Confidence            9999999998753  33444433   4566667888999999999999999999999999999999999999 2378999


Q ss_pred             EeCCCcEEEEeCCCCc---------eEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          250 GSSLGSIAISGLSSDQ---------RVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       250 ~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      |+.||.|++||+++++         ++..+..|..  .|.+++|  ++.+|++|+.-
T Consensus       352 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~l~s~s~D  404 (435)
T 1p22_A          352 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQIVSSSHD  404 (435)
T ss_dssp             EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSCEEECCSS
T ss_pred             EeCCCcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe--CCCEEEEEeCC
Confidence            9999999999998766         8889998888  8999999  78889998854

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=4e-27  Score=197.47  Aligned_cols=231  Identities=12%  Similarity=0.075  Sum_probs=163.3

Q ss_pred             cHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEE
Q 022303           28 NGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQ  107 (299)
Q Consensus        28 ~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~  107 (299)
                      +..+...+....+|.+.|.|++|+|+++++++                . .+..+++|..  .  +...        .. 
T Consensus         5 s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~----------------g-~~~~~~iw~~--~--~~~~--------~~-   54 (355)
T 3vu4_A            5 SMITRNPIVPENHVSNPVTDYEFNQDQSCLIL----------------S-TLKSFEIYNV--H--PVAH--------IM-   54 (355)
T ss_dssp             --------------CCCCCEEEECTTSSEEEE----------------E-CSSEEEEEEE--T--TEEE--------EE-
T ss_pred             cccccCCccccccCCCceEEEEECCCCCEEEE----------------E-cCCEEEEEec--C--Ccce--------ee-
Confidence            34444555567789999999999999999886                1 2234566632  1  1111        11 


Q ss_pred             eeccccCeeEEEe--cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCc-e
Q 022303          108 WKAHSVGVDQCRM--KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGL-R  183 (299)
Q Consensus       108 ~~~h~~~i~~~~~--~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~-~  183 (299)
                       ..+...+..+.+  .++ ++++++.|++|++||..+++++..+..+..+..+.++++  .++.+.++.|++||+.+. +
T Consensus        55 -~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~  131 (355)
T 3vu4_A           55 -SQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWK  131 (355)
T ss_dssp             -EEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EEEEEETTEEEEEESSTTCC
T ss_pred             -eeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EEEEEEcCEEEEEECCCCce
Confidence             112224666666  344 457788899999999999999999988777777888765  455556899999999877 3


Q ss_pred             eeeeccCCccceeeeeccCCCeEEE--ecCCCcEEEEEcCCcc----------------eeeeccccCCceeEEEeCCC-
Q 022303          184 SVFPSREGTFMKGLCMRYFDPEAVV--GCEDGTARVFDMYSRK----------------CSQIIRMHCAPVTSLSLSED-  244 (299)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~----------------~~~~~~~~~~~i~~~~~~~~-  244 (299)
                      ..... .. ...+.++++  ..++.  |+.+|.|++||+++++                .+..+.+|..+|++++|+|+ 
T Consensus       132 ~~~~~-~~-~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g  207 (355)
T 3vu4_A          132 RITDD-IR-FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS  207 (355)
T ss_dssp             BSSCC-EE-EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS
T ss_pred             eeEEe-cc-CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC
Confidence            22211 11 222445665  55554  6899999999999765                26778899999999999999 


Q ss_pred             CeEEEEeCCCc-EEEEeCCCCceEEEee-c-cCCCCcEEEEEccCCCCeEEeeecc
Q 022303          245 QLIISGSSLGS-IAISGLSSDQRVATLR-S-TDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       245 ~~l~~~~~dg~-i~iwd~~~~~~~~~~~-~-~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ++|++|+.|++ |++||+++++++.++. + |..  .|++++|+|+|++|++++.-
T Consensus       208 ~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~--~v~~~~~s~~~~~l~s~s~d  261 (355)
T 3vu4_A          208 DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA--DVVDMKWSTDGSKLAVVSDK  261 (355)
T ss_dssp             SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS--CEEEEEECTTSCEEEEEETT
T ss_pred             CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC--cEEEEEECCCCCEEEEEECC
Confidence            99999999999 9999999999999998 4 666  89999999999999999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.3e-28  Score=207.75  Aligned_cols=266  Identities=11%  Similarity=0.060  Sum_probs=195.7

Q ss_pred             CCCCCCCCCcchhccCcHHHHHHHh----h-ccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhh
Q 022303           12 PPKKRSSKPRATIESLNGDIICMIF----S-SLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHL   86 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~i~----~-~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~   86 (299)
                      .+....+..+.++++|+.+....-.    . ..+|.+.|.+++|+++++.+++                ...|+.+++| 
T Consensus        76 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s----------------~s~dg~i~vw-  138 (437)
T 3gre_A           76 TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAV----------------SSKDGQIIVL-  138 (437)
T ss_dssp             SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEE----------------EETTSEEEEE-
T ss_pred             CCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEE----------------EeCCCEEEEE-
Confidence            4455666678899999988743221    1 1268999999999999998886                3367778888 


Q ss_pred             hhhhhccccceeecCc-eeeEEee--c--cccCeeEEEe---cCC-EEEEEeCCCcEEEEecCCceeEEEecC--C-Cce
Q 022303           87 EELAMKHHRFALEEGR-IDIDQWK--A--HSVGVDQCRM---KRG-LILTGVGDKVMRLWSLEGYKCVEEYSL--P-NAA  154 (299)
Q Consensus        87 ~~~~~~~~~~~l~~g~-~~~~~~~--~--h~~~i~~~~~---~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~--~-~~~  154 (299)
                       ++.....++.+.... ..++.+.  .  +...+.++.+   +++ +|++|+.||.|++||+.+++++..+..  | ..+
T Consensus       139 -d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v  217 (437)
T 3gre_A          139 -KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAV  217 (437)
T ss_dssp             -EEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCE
T ss_pred             -EeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCce
Confidence             443222222211111 1233332  2  5667777764   445 999999999999999999999999986  4 455


Q ss_pred             eEEEEecCCCEEE-EEcCCeEEEEecCCceeeee---ccCCccceeeeec----cCCCeEEEecCCCcEEEEEcCCccee
Q 022303          155 SLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFP---SREGTFMKGLCMR----YFDPEAVVGCEDGTARVFDMYSRKCS  226 (299)
Q Consensus       155 ~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~---~~~~~~~~~~~~~----~~~~~l~s~~~d~~i~iwd~~~~~~~  226 (299)
                      ..++|+|++++|+ ++.||.|++||+++......   .+...+ ..+++.    +++..+++++.|+.|++||+++++.+
T Consensus       218 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  296 (437)
T 3gre_A          218 SSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPI-THVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQ  296 (437)
T ss_dssp             EEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEE-EEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCce-EEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEE
Confidence            5699999999999 99999999999998764332   222222 234333    44557999999999999999988877


Q ss_pred             eeccc--------------------------cCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeec--------
Q 022303          227 QIIRM--------------------------HCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRS--------  272 (299)
Q Consensus       227 ~~~~~--------------------------~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------  272 (299)
                      ..+..                          |...|++++|+++++|++|+.|+.|++||+.+++++..+.+        
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  376 (437)
T 3gre_A          297 YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVF  376 (437)
T ss_dssp             EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEE
T ss_pred             EEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceE
Confidence            66642                          55668889999448999999999999999999988887776        


Q ss_pred             -----------------------------cCCCCcEEEEEccCC--CCeEEeeeccc
Q 022303          273 -----------------------------TDCTGHIICLMYPQF--LHMLFFLCFLP  298 (299)
Q Consensus       273 -----------------------------~~~~~~i~~~~~s~~--g~~l~s~s~~~  298 (299)
                                                   |..  .|++++|+++  +.+|++|+.-+
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~I~~i~~~~~~~~~~l~s~~~dG  431 (437)
T 3gre_A          377 IPTQVTANLTMLLRKMKRTSTHSVDDSLYHHD--IINSISTCEVDETPLLVACDNSG  431 (437)
T ss_dssp             EEEEEETTEEEEEEECC-------------CC--CEEEEEEEESSSSEEEEEEETTS
T ss_pred             EEEEeecceEEEEEecccccccccCccccccc--ceeeEeeeccCCceEEEEEcCCc
Confidence                                         555  8999999998  78999998654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.95  E-value=9.7e-26  Score=189.07  Aligned_cols=191  Identities=15%  Similarity=0.151  Sum_probs=161.6

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEecC
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWRRN  180 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~  180 (299)
                      ...+.+|.+.|+++.| +++ +|++++.||.|++||+.+++.+..+..|...+ .++|+|++++|+ ++.|+.|++||+.
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  104 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS  104 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            5678999999999999 565 99999999999999999999999999776655 499999999999 9999999999999


Q ss_pred             CceeeeeccCCccceeeeeccCCCeEEEecCC-----CcEEEEEcCCcce-----------eeeccccCC--ceeEEEeC
Q 022303          181 GLRSVFPSREGTFMKGLCMRYFDPEAVVGCED-----GTARVFDMYSRKC-----------SQIIRMHCA--PVTSLSLS  242 (299)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~-----------~~~~~~~~~--~i~~~~~~  242 (299)
                      +.+.............+++++++..+++++.+     +.|.+||+.....           +..+..|..  .+.+++|+
T Consensus       105 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (369)
T 3zwl_B          105 NGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS  184 (369)
T ss_dssp             TCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC
T ss_pred             CCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc
Confidence            87643332233333457899999999999998     9999999986542           233334444  89999999


Q ss_pred             CC-CeEEEEeCCCcEEEEeCCC-CceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          243 ED-QLIISGSSLGSIAISGLSS-DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       243 ~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      |+ ++|++++.||.|++||+++ ++.+..+..|..  .|.+++|+|++++|++++.-
T Consensus       185 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d  239 (369)
T 3zwl_B          185 TKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK--SISDMQFSPDLTYFITSSRD  239 (369)
T ss_dssp             GGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSS--CEEEEEECTTSSEEEEEETT
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCC--ceeEEEECCCCCEEEEecCC
Confidence            99 9999999999999999998 788889988887  89999999999999998753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=3.9e-27  Score=202.60  Aligned_cols=240  Identities=11%  Similarity=0.077  Sum_probs=182.8

Q ss_pred             hhccCccchhhHHHhhhh-HHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccC
Q 022303           36 FSSLGFFDLVRCSAVCKS-WNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVG  114 (299)
Q Consensus        36 ~~~~~h~~~v~~~~~~~~-~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~  114 (299)
                      ....+|.+.|++++++|+ ++.+++                ...++.+++|  ++...............+..+.+|...
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat----------------~~~dg~V~vw--d~~~~~~~~~~~~~~~~~~~~~~h~~~  183 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIAT----------------KTPSSDVLVF--DYTKHPSKPEPSGECQPDLRLRGHQKE  183 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEE----------------ECSSSCEEEE--EGGGSCSSCCTTCCCCCSEEEECCSSC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEE----------------ECCCCcEEEE--ECCCcccccCccccCCCcEEecCCCCC
Confidence            345589999999999997 667776                2255667777  333321111000112335677899999


Q ss_pred             eeEEEe-cCC--EEEEEeCCCcEEEEecCCcee-------EEEecCCCcee-EEEEec-CCCEEE-EEcCCeEEEEecCC
Q 022303          115 VDQCRM-KRG--LILTGVGDKVMRLWSLEGYKC-------VEEYSLPNAAS-LVDFDF-DESKIV-GLIGTRICIWRRNG  181 (299)
Q Consensus       115 i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~-~~~~~~-~~~~l~-~~~d~~i~v~d~~~  181 (299)
                      |.++.| +++  +|++|+.||.|++||+.++..       ...+..|...+ .++|+| ++..++ ++.|+.|++||+++
T Consensus       184 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~  263 (430)
T 2xyi_A          184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN  263 (430)
T ss_dssp             CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence            999999 433  899999999999999987321       34555665544 599999 667777 88999999999987


Q ss_pred             ce-----eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCC-cceeeeccccCCceeEEEeCCC--CeEEEEeC
Q 022303          182 LR-----SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYS-RKCSQIIRMHCAPVTSLSLSED--QLIISGSS  252 (299)
Q Consensus       182 ~~-----~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~  252 (299)
                      ..     ..+..+...+. .++|++.++. +++|+.||.|++||+++ +..+..+..|...|.+++|+|+  .+|++++.
T Consensus       264 ~~~~~~~~~~~~~~~~v~-~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~  342 (430)
T 2xyi_A          264 NNTSKPSHTVDAHTAEVN-CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT  342 (430)
T ss_dssp             SCSSSCSEEEECCSSCEE-EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET
T ss_pred             CCCCcceeEeecCCCCeE-EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC
Confidence            52     23344444433 5688998875 88999999999999998 5667888889999999999998  47999999


Q ss_pred             CCcEEEEeCCC--------------CceEEEeeccCCCCcEEEEEccCCCC-eEEeeec
Q 022303          253 LGSIAISGLSS--------------DQRVATLRSTDCTGHIICLMYPQFLH-MLFFLCF  296 (299)
Q Consensus       253 dg~i~iwd~~~--------------~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~s~s~  296 (299)
                      |+.|++||+..              .+++..+.+|..  .|++++|+|+++ +|++++.
T Consensus       343 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~l~s~s~  399 (430)
T 2xyi_A          343 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA--KISDFSWNPNEPWIICSVSE  399 (430)
T ss_dssp             TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS--CEEEEEECSSSTTEEEEEET
T ss_pred             CCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC--CceEEEECCCCCCEEEEEEC
Confidence            99999999986              366777778877  899999999999 7888764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.95  E-value=8.5e-28  Score=231.46  Aligned_cols=254  Identities=15%  Similarity=0.164  Sum_probs=210.9

Q ss_pred             CCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhc
Q 022303           13 PKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMK   92 (299)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (299)
                      +....++.+.++.+|+.+....+..+.+|.+.|.+++|+|+++++++                ...|+.+++|..  .. 
T Consensus       628 ~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s----------------~~~d~~v~vwd~--~~-  688 (1249)
T 3sfz_A          628 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIAT----------------CSADKKVKIWDS--AT-  688 (1249)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE----------------EETTSEEEEEET--TT-
T ss_pred             CEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEE----------------EeCCCeEEEEEC--CC-
Confidence            33444556778999999998888888899999999999999999987                235677888832  22 


Q ss_pred             cccceeecCceeeEEeeccccCeeEEEe-c--CC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE
Q 022303           93 HHRFALEEGRIDIDQWKAHSVGVDQCRM-K--RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV  167 (299)
Q Consensus        93 ~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~  167 (299)
                               ...+..+.+|...|.++.| +  +. ++++|+.|+.|++||+.+++++..+..|...+. ++|+|+++.++
T Consensus       689 ---------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~  759 (1249)
T 3sfz_A          689 ---------GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLA  759 (1249)
T ss_dssp             ---------CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             ---------CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEE
Confidence                     2235667899999999999 4  33 899999999999999999999999988876555 99999999999


Q ss_pred             -EEcCCeEEEEecCCceeeeecc--C------------CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc-c
Q 022303          168 -GLIGTRICIWRRNGLRSVFPSR--E------------GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-M  231 (299)
Q Consensus       168 -~~~d~~i~v~d~~~~~~~~~~~--~------------~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~  231 (299)
                       ++.||.|++||+.+........  .            ......+++++++..+++++ ++.+.+||+.++..+..+. .
T Consensus       760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~  838 (1249)
T 3sfz_A          760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG  838 (1249)
T ss_dssp             EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS
T ss_pred             EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC
Confidence             9999999999998764221110  0            01223467888888888776 6899999999998877765 7


Q ss_pred             cCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          232 HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       232 ~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      |...|.+++|+|+ .++++++.||.|++||+.+++.+..+.+|..  .|++++|+|+|++|++++.-
T Consensus       839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~s~s~d  903 (1249)
T 3sfz_A          839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMFSPDGSSFLTASDD  903 (1249)
T ss_dssp             SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETT
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEECCCCCEEEEEeCC
Confidence            8899999999999 9999999999999999999999999999988  99999999999999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.95  E-value=9.8e-26  Score=190.76  Aligned_cols=189  Identities=11%  Similarity=0.093  Sum_probs=158.0

Q ss_pred             eEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEec--CCCc-eeEEEEec-CCCEEE-EEcCCeEEE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYS--LPNA-ASLVDFDF-DESKIV-GLIGTRICI  176 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~-~~~~~~~~-~~~~l~-~~~d~~i~v  176 (299)
                      .+.+.+|...|+++.| +++  +|++|+.||.|++||+.+++....+.  .|.. +..++|+| +++.++ ++.|+.|++
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i  145 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL  145 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence            5567899999999999 554  99999999999999999888877765  3544 44599999 677888 999999999


Q ss_pred             EecCCce-eeeeccCC--ccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-C-eEEEEe
Q 022303          177 WRRNGLR-SVFPSREG--TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGS  251 (299)
Q Consensus       177 ~d~~~~~-~~~~~~~~--~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~  251 (299)
                      ||+.+.. ..+..+..  .....+++++++..+++++.|+.|++||+ +++.+..+..|...|.+++|+|+ + ++++++
T Consensus       146 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  224 (383)
T 3ei3_B          146 RDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSS  224 (383)
T ss_dssp             EETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEE
T ss_pred             EECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEe
Confidence            9999754 23333332  22335689999999999999999999999 47788888899999999999999 6 899999


Q ss_pred             CCCcEEEEeCCC----CceEEEeeccCCCCcEEEEEccC-CCCeEEeeecc
Q 022303          252 SLGSIAISGLSS----DQRVATLRSTDCTGHIICLMYPQ-FLHMLFFLCFL  297 (299)
Q Consensus       252 ~dg~i~iwd~~~----~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~s~s~~  297 (299)
                      .|+.|++||+++    ++++..+ .|..  .|.+++|+| +|++|++++.-
T Consensus       225 ~d~~i~iwd~~~~~~~~~~~~~~-~~~~--~v~~~~~s~~~~~~l~~~~~d  272 (383)
T 3ei3_B          225 VDATVKLWDLRNIKDKNSYIAEM-PHEK--PVNAAYFNPTDSTKLLTTDQR  272 (383)
T ss_dssp             TTSEEEEEEGGGCCSTTCEEEEE-ECSS--CEEEEEECTTTSCEEEEEESS
T ss_pred             CCCEEEEEeCCCCCcccceEEEe-cCCC--ceEEEEEcCCCCCEEEEEcCC
Confidence            999999999998    6677777 5666  899999999 99999999853

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.95  E-value=8.8e-28  Score=200.90  Aligned_cols=230  Identities=11%  Similarity=0.092  Sum_probs=176.5

Q ss_pred             cCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCC---CCchhhhhhhhhhhccccceeecCceeeEEeeccccCe
Q 022303           39 LGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNT---SGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGV  115 (299)
Q Consensus        39 ~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i  115 (299)
                      .+|.+.|.+++|+|++..++..               ..   .|+.+++|..  .         .+........+|..+|
T Consensus        15 ~~h~~~v~~~~~~p~~~~l~~~---------------~s~~~~d~~v~iw~~--~---------~~~~~~~~~~~~~~~v   68 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSAKFVTM---------------GNFARGTGVIQLYEI--Q---------HGDLKLLREIEKAKPI   68 (357)
T ss_dssp             EECSSCEEEEEECTTSSEEEEE---------------EC--CCCEEEEEEEE--C---------SSSEEEEEEEEESSCE
T ss_pred             cCCCCceEEEEEcCCCceEEEe---------------cCccCCCcEEEEEeC--C---------CCcccceeeecccCcE
Confidence            4699999999999998655420               11   2677888832  2         2222222234799999


Q ss_pred             eEEEe-cC----CEEEEEeCCCcEEEEecCCce-eEEEecCCCceeE-EE------EecCCCEEE-EEcCCeEEEEecCC
Q 022303          116 DQCRM-KR----GLILTGVGDKVMRLWSLEGYK-CVEEYSLPNAASL-VD------FDFDESKIV-GLIGTRICIWRRNG  181 (299)
Q Consensus       116 ~~~~~-~~----~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~-~~------~~~~~~~l~-~~~d~~i~v~d~~~  181 (299)
                      .++.| ++    .+|++|+.||.|++||+.+++ .+..+..|...+. ++      |+|+++.++ ++.|+.|++||+++
T Consensus        69 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~  148 (357)
T 3i2n_A           69 KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQ  148 (357)
T ss_dssp             EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTS
T ss_pred             EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCC
Confidence            99999 54    499999999999999999988 8888887766554 74      468899999 99999999999987


Q ss_pred             ce---eeeeccCCc---cceeee----eccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCC---C-CeE
Q 022303          182 LR---SVFPSREGT---FMKGLC----MRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE---D-QLI  247 (299)
Q Consensus       182 ~~---~~~~~~~~~---~~~~~~----~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~---~-~~l  247 (299)
                      ..   ..+..+.+.   ....++    +++++..+++++.|+.|++||+++++.... ..|...|.+++|+|   + .++
T Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l  227 (357)
T 3i2n_A          149 KDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKL  227 (357)
T ss_dssp             CSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEE
T ss_pred             CCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEE
Confidence            64   233333332   122233    668888899999999999999999887555 47888999999999   7 999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEee-----ccCCCCcEEEEEccCCCC-eEEeeecc
Q 022303          248 ISGSSLGSIAISGLSSDQRVATLR-----STDCTGHIICLMYPQFLH-MLFFLCFL  297 (299)
Q Consensus       248 ~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~i~~~~~s~~g~-~l~s~s~~  297 (299)
                      ++++.||.|++||+++++.+..+.     .|..  .|++++|+|+++ +|++|+.-
T Consensus       228 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d  281 (357)
T 3i2n_A          228 VATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS--TVWQVRHLPQNRELFLTAGGA  281 (357)
T ss_dssp             EEEESTTEEEEEEEEEEETTTEEEEEEEECCSS--CEEEEEEETTEEEEEEEEETT
T ss_pred             EEECCCCeEEEEeCcCCCcccceeeeccCCCcC--CEEEEEECCCCCcEEEEEeCC
Confidence            999999999999998877655554     7777  899999999998 78888753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.7e-26  Score=190.84  Aligned_cols=191  Identities=17%  Similarity=0.206  Sum_probs=157.6

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecC--CceeEEEecCCCcee-EEEEecC--CCEEE-EEcCCeEEE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLE--GYKCVEEYSLPNAAS-LVDFDFD--ESKIV-GLIGTRICI  176 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~-~~~~~~~--~~~l~-~~~d~~i~v  176 (299)
                      +.++++|.+.|++++| +++ +|++|+.||.|++||+.  +++.+..+..|...+ .++|+++  +++|+ ++.|+.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   83 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   83 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence            3566899999999999 666 99999999999999998  667778888776555 5999877  88888 999999999


Q ss_pred             EecCCce----eeeeccCCccceeeeeccC--CCeEEEecCCCcEEEEEcCCcce--eeeccccCCceeEEEeCC-----
Q 022303          177 WRRNGLR----SVFPSREGTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSRKC--SQIIRMHCAPVTSLSLSE-----  243 (299)
Q Consensus       177 ~d~~~~~----~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~-----  243 (299)
                      ||+.+..    ..+..+...+. .++++++  +..+++++.|+.|++||++++..  ...+..|...|.+++|+|     
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  162 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred             EEcCCCceeEeeeecCCCcceE-EEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence            9998874    22333444433 5688888  78899999999999999998743  345568899999999999     


Q ss_pred             --------C-CeEEEEeCCCcEEEEeCCCCc----eEEEeeccCCCCcEEEEEccCC---CCeEEeeeccc
Q 022303          244 --------D-QLIISGSSLGSIAISGLSSDQ----RVATLRSTDCTGHIICLMYPQF---LHMLFFLCFLP  298 (299)
Q Consensus       244 --------~-~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~i~~~~~s~~---g~~l~s~s~~~  298 (299)
                              + .++++++.||.|++||+++++    .+..+..|..  .|.+++|+|+   +++|++++.-+
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~~~l~s~~~dg  231 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD--WVRDVAWSPTVLLRSYLASVSQDR  231 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS--CEEEEEECCCCSSSEEEEEEETTS
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC--cEeEEEECCCCCCCCeEEEEeCCC
Confidence                    6 899999999999999998764    4567777777  8999999999   89999998643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=7.3e-27  Score=217.29  Aligned_cols=228  Identities=11%  Similarity=0.072  Sum_probs=176.6

Q ss_pred             ccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeE
Q 022303           38 SLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQ  117 (299)
Q Consensus        38 ~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~  117 (299)
                      ..+|.+.|+|++|+|++++||+                ...|+.+++|..  ..           ........|..+|.+
T Consensus        13 ~~gh~~~V~~lafspdg~~lAs----------------gs~Dg~I~lw~~--~~-----------~~~~~~~~~~~~V~~   63 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAI----------------ATVTGEVHIYGQ--QQ-----------VEVVIKLEDRSAIKE   63 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEE----------------EETTSEEEEECS--TT-----------CEEEEECSSCCCEEE
T ss_pred             ccCCCCCcEEEEECCCCCEEEE----------------EeCCCEEEEEeC--CC-----------cEEEEEcCCCCCEEE
Confidence            3489999999999999999997                336677888832  11           111111357889999


Q ss_pred             EEecCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceee----------
Q 022303          118 CRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV----------  185 (299)
Q Consensus       118 ~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~----------  185 (299)
                      +.|..+ +|++++.|++|++||+.+++++..+..+..+..++|+|++++++ ++.||.|++||+++....          
T Consensus        64 l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~  143 (902)
T 2oaj_A           64 MRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS  143 (902)
T ss_dssp             EEEETTTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred             EEEcCCCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccc
Confidence            999336 89999999999999999999999888776777799999999999 999999999999887532          


Q ss_pred             ---eeccCCccceeeeeccCC-CeEEEecCCCcEEEEEcCCcceeeecccc------------------CCceeEEEeCC
Q 022303          186 ---FPSREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYSRKCSQIIRMH------------------CAPVTSLSLSE  243 (299)
Q Consensus       186 ---~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------------~~~i~~~~~~~  243 (299)
                         ...|.+.+. .++|+|.+ ..+++|+.|+.| +||+++++.+..+..|                  ...|.+++|+|
T Consensus       144 ~~~~~~h~~~V~-sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp  221 (902)
T 2oaj_A          144 SFFPAARLSPIV-SIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP  221 (902)
T ss_dssp             HTCSSSCCCCCC-EEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred             ccccccCCCCeE-EEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence               122333333 45777754 568999999999 9999999888777654                  46799999999


Q ss_pred             C-CeEEEEeCCCcEEEEeCCCCceEEE--ee---ccC-----------CCCcEEEEEcc----CCC-CeEEeeec
Q 022303          244 D-QLIISGSSLGSIAISGLSSDQRVAT--LR---STD-----------CTGHIICLMYP----QFL-HMLFFLCF  296 (299)
Q Consensus       244 ~-~~l~~~~~dg~i~iwd~~~~~~~~~--~~---~~~-----------~~~~i~~~~~s----~~g-~~l~s~s~  296 (299)
                      + ++|++|+.||.|++||+++++++..  +.   .|.           ...+|++++|+    |++ .+|++|+.
T Consensus       222 dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~  296 (902)
T 2oaj_A          222 NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS  296 (902)
T ss_dssp             TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred             CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence            9 9999999999999999999988764  21   121           11279999995    444 56777754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.95  E-value=4.1e-27  Score=198.68  Aligned_cols=187  Identities=11%  Similarity=0.059  Sum_probs=149.0

Q ss_pred             EeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCc--eeEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEecC
Q 022303          107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY--KCVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWRRN  180 (299)
Q Consensus       107 ~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~  180 (299)
                      .++.|.++|+++.| +++ +|++|+.|+.|++||+.++  +.+..+..|...+ .++|+|++++|+ ++.|+.|++||+.
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            34567789999999 666 9999999999999999988  7777888776555 499999999999 9999999999998


Q ss_pred             Cce-----eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcc---eeeeccc-cCCceeEEEeCCC-CeEEEE
Q 022303          181 GLR-----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK---CSQIIRM-HCAPVTSLSLSED-QLIISG  250 (299)
Q Consensus       181 ~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~-~~~~i~~~~~~~~-~~l~~~  250 (299)
                      +..     ..+..+...+. .+++++++..+++++.|+.|++||+++++   ....+.. |...|.+++|+|+ ++|+++
T Consensus        86 ~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~  164 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAAT-FVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG  164 (377)
T ss_dssp             ---CCCCEEECCCCSSCEE-EEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCceeeeeEecccCCceE-EEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence            764     23334444443 56888989999999999999999999877   3666666 9999999999999 999999


Q ss_pred             eCCCcEEEEeCC------------------CCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          251 SSLGSIAISGLS------------------SDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       251 ~~dg~i~iwd~~------------------~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +.|+.|++||++                  .++++..+ .|..  .|.+++|+|+|++|++++..
T Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~v~~~~~sp~~~~l~~~~~d  226 (377)
T 3dwl_C          165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG--WVHAVGFSPSGNALAYAGHD  226 (377)
T ss_dssp             ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS--SEEEEEECTTSSCEEEEETT
T ss_pred             eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc--eEEEEEECCCCCEEEEEeCC
Confidence            999999999985                  35566666 6666  89999999999999999854

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.3e-26  Score=198.01  Aligned_cols=191  Identities=14%  Similarity=0.171  Sum_probs=151.8

Q ss_pred             eeEEe-eccccCeeEEEe-c-CC-EEEEEeCCCcEEEEecCC---ce---eEEEecCCCceeEEEEecCCCEEE-EEcCC
Q 022303          104 DIDQW-KAHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEG---YK---CVEEYSLPNAASLVDFDFDESKIV-GLIGT  172 (299)
Q Consensus       104 ~~~~~-~~h~~~i~~~~~-~-~~-~l~s~~~dg~i~iwd~~~---~~---~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~  172 (299)
                      .+..+ .+|.+.|++++| + ++ +|++|+.||+|++||+.+   +.   ....+.....+..++|+|+++.|+ ++.|+
T Consensus        54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg  133 (437)
T 3gre_A           54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDG  133 (437)
T ss_dssp             EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCC
Confidence            36667 899999999999 5 55 999999999999999876   33   344445455666799999999999 99999


Q ss_pred             eEEEEecC---Cceee--eec------------cCCccceeee--eccCCCeEEEecCCCcEEEEEcCCcceeeeccc--
Q 022303          173 RICIWRRN---GLRSV--FPS------------REGTFMKGLC--MRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM--  231 (299)
Q Consensus       173 ~i~v~d~~---~~~~~--~~~------------~~~~~~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--  231 (299)
                      .|++||+.   ++...  ...            ...... .+.  +++++..+++++.|+.|++||+++++.+..+..  
T Consensus       134 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  212 (437)
T 3gre_A          134 QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV-RMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP  212 (437)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE-EEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCG
T ss_pred             EEEEEEeccccCCceeeccccceeEEEEccCcccccCce-EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC
Confidence            99999995   22111  110            111111 111  345677899999999999999999999998887  


Q ss_pred             cCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEee-ccCCCCcEEEE----EccCCCCeEEeeecc
Q 022303          232 HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLR-STDCTGHIICL----MYPQFLHMLFFLCFL  297 (299)
Q Consensus       232 ~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~----~~s~~g~~l~s~s~~  297 (299)
                      |...|++++|+|+ ++|++|+.||.|++||+++++++.++. .+..  +|+++    +|+|++.+|++|+.-
T Consensus       213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~s~~~~~l~s~~~d  282 (437)
T 3gre_A          213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA--PITHVEVCQFYGKNSVIVVGGSSK  282 (437)
T ss_dssp             GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCE--EEEEEEECTTTCTTEEEEEEESTT
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCC--ceEEEEeccccCCCccEEEEEcCC
Confidence            8899999999999 999999999999999999999999886 5555  89999    555678899998753

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.95  E-value=1.3e-25  Score=186.20  Aligned_cols=186  Identities=14%  Similarity=0.161  Sum_probs=154.1

Q ss_pred             EeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCcee---EEEec--CCC-ceeEEEEecCCCEEE-EEcCCeEEEE
Q 022303          107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKC---VEEYS--LPN-AASLVDFDFDESKIV-GLIGTRICIW  177 (299)
Q Consensus       107 ~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~---~~~~~--~~~-~~~~~~~~~~~~~l~-~~~d~~i~v~  177 (299)
                      ...+|.+.|.++.| +++ +|++++ ||.|++||+.+++.   +..+.  .+. .+..++|+|+++.++ ++.|+.|++|
T Consensus        46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~  124 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW  124 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred             eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence            33589999999999 566 888888 99999999987653   23332  344 455599999999988 9999999999


Q ss_pred             ecCCce----eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC
Q 022303          178 RRNGLR----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS  252 (299)
Q Consensus       178 d~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~  252 (299)
                      |+.+..    ..+..+..... .+++++++..+++++.|+.|++||+++++.+..+..|...|.+++|+|+ ++|++++.
T Consensus       125 d~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  203 (337)
T 1gxr_A          125 DLAAPTPRIKAELTSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL  203 (337)
T ss_dssp             ECCCC--EEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ECCCCCcceeeecccCCCceE-EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence            998765    22333443333 5688899999999999999999999999999999889999999999999 89999999


Q ss_pred             CCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          253 LGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       253 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ||.|++||+++++.+..+.. ..  .+.+++|+|++++|++++..
T Consensus       204 dg~i~~~d~~~~~~~~~~~~-~~--~v~~~~~s~~~~~l~~~~~~  245 (337)
T 1gxr_A          204 DNTVRSWDLREGRQLQQHDF-TS--QIFSLGYCPTGEWLAVGMES  245 (337)
T ss_dssp             TSEEEEEETTTTEEEEEEEC-SS--CEEEEEECTTSSEEEEEETT
T ss_pred             CCcEEEEECCCCceEeeecC-CC--ceEEEEECCCCCEEEEEcCC
Confidence            99999999999998888754 33  89999999999999998753

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.95  E-value=5e-26  Score=193.89  Aligned_cols=180  Identities=14%  Similarity=0.183  Sum_probs=154.0

Q ss_pred             ccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce--
Q 022303          110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR--  183 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~--  183 (299)
                      .|...|.++.| +++ +|++|+.||.|++||+.+++.+..+..|...+. ++|  +++.++ ++.|+.|++||++...  
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~  209 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ  209 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence            48999999999 566 999999999999999999999999987766554 888  456777 9999999999998543  


Q ss_pred             -eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC--CeEEEEe--CCCcEEE
Q 022303          184 -SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGS--SLGSIAI  258 (299)
Q Consensus       184 -~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~--~dg~i~i  258 (299)
                       ..+..+.+.+. .+++++++..+++++.|+.|++||+++++.+..+..|...|.+++|+|+  .++++++  .|+.|++
T Consensus       210 ~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i  288 (401)
T 4aez_A          210 IGTLQGHSSEVC-GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF  288 (401)
T ss_dssp             EEEEECCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred             eeEEcCCCCCee-EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence             34455555544 4688999999999999999999999999999888899999999999996  6777765  7999999


Q ss_pred             EeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          259 SGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       259 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ||+++++++..+..+.   .|.+++|+|++++|++++
T Consensus       289 ~d~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~  322 (401)
T 4aez_A          289 WNAATGARVNTVDAGS---QVTSLIWSPHSKEIMSTH  322 (401)
T ss_dssp             EETTTCCEEEEEECSS---CEEEEEECSSSSEEEEEE
T ss_pred             EECCCCCEEEEEeCCC---cEEEEEECCCCCeEEEEe
Confidence            9999999999887543   799999999999999854

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.95  E-value=2.9e-25  Score=186.67  Aligned_cols=188  Identities=13%  Similarity=0.048  Sum_probs=157.9

Q ss_pred             EeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCce--eEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEecC
Q 022303          107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK--CVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWRRN  180 (299)
Q Consensus       107 ~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~  180 (299)
                      .+..|.++|+++.| +++ +|++++.|+.|++||+.+++  .+..+..|...+ .++|+|++++++ ++.|+.|++||+.
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            34679999999999 566 99999999999999999987  888888776555 499999999999 9999999999998


Q ss_pred             Ccee--e--eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcce---ee-eccccCCceeEEEeCCC-CeEEEEe
Q 022303          181 GLRS--V--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC---SQ-IIRMHCAPVTSLSLSED-QLIISGS  251 (299)
Q Consensus       181 ~~~~--~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~-~~~~~~~~i~~~~~~~~-~~l~~~~  251 (299)
                      +.+.  .  ...+...+. .+++++++..+++++.|+.|++||++.++.   .. ....|...|.+++|+|+ ++|++++
T Consensus        83 ~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  161 (372)
T 1k8k_C           83 GRTWKPTLVILRINRAAR-CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS  161 (372)
T ss_dssp             TTEEEEEEECCCCSSCEE-EEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCeeeeeEEeecCCCcee-EEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence            7752  1  233433333 568889999999999999999999998763   22 33478899999999999 9999999


Q ss_pred             CCCcEEEEeC------------------CCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          252 SLGSIAISGL------------------SSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       252 ~dg~i~iwd~------------------~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      .||.|++||+                  ..++++..+..|..  .|.+++|+|++++|++++..
T Consensus       162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d  223 (372)
T 1k8k_C          162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG--WVHGVCFSANGSRVAWVSHD  223 (372)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS--CEEEEEECSSSSEEEEEETT
T ss_pred             CCCCEEEEEcccccccccccccccccccchhhheEecCCCCC--eEEEEEECCCCCEEEEEeCC
Confidence            9999999995                  46788888988877  89999999999999999854

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.95  E-value=2.5e-27  Score=198.65  Aligned_cols=231  Identities=12%  Similarity=0.093  Sum_probs=177.8

Q ss_pred             CccchhhHHHhhhh---HH--HHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccC
Q 022303           40 GFFDLVRCSAVCKS---WN--AIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVG  114 (299)
Q Consensus        40 ~h~~~v~~~~~~~~---~~--~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~  114 (299)
                      +|.+.|.+++|+|+   +.  .+++                 ..+..+++|  ++........+.     ......|...
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~-----------------~~~~~v~vw--~~~~~~~~~~~~-----~~~~~~~~~~   71 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFAT-----------------VGSNRVTLY--ECHSQGEIRLLQ-----SYVDADADEN   71 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEE-----------------EETTEEEEE--EECGGGCEEEEE-----EEECSCTTCC
T ss_pred             CCCCceEEEEEecccCCCCceEEEE-----------------CCCCEEEEE--EcCCCcEEEeee-----eccccCCCCc
Confidence            79999999999984   32  3332                 133456667  322222111110     0111236788


Q ss_pred             eeEEEe-cC----C-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEec-CCCEEE-EEcCCeEEEEecCCceee
Q 022303          115 VDQCRM-KR----G-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDF-DESKIV-GLIGTRICIWRRNGLRSV  185 (299)
Q Consensus       115 i~~~~~-~~----~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~-~~~~l~-~~~d~~i~v~d~~~~~~~  185 (299)
                      |.++.| ++    + +|++|+.||.|++||+.+++.+..+..|...+ .++|+| ++++++ ++.|+.|++||+++++..
T Consensus        72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  151 (366)
T 3k26_A           72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV  151 (366)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE
Confidence            999999 54    4 89999999999999999999999999776555 499999 889888 999999999999987643


Q ss_pred             ee-----ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc----------------------------c
Q 022303          186 FP-----SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM----------------------------H  232 (299)
Q Consensus       186 ~~-----~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------------------------~  232 (299)
                      ..     .+...+. .+++++++..+++++.|+.|++||+++++....+..                            |
T Consensus       152 ~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (366)
T 3k26_A          152 AIFGGVEGHRDEVL-SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH  230 (366)
T ss_dssp             EEECSTTSCSSCEE-EEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred             EEecccccccCcee-EEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence            32     3444433 568889899999999999999999998776554443                            8


Q ss_pred             CCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCce--------------EEEeeccCCCCcEEEEEccCC--CCeEEeeec
Q 022303          233 CAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQR--------------VATLRSTDCTGHIICLMYPQF--LHMLFFLCF  296 (299)
Q Consensus       233 ~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~i~~~~~s~~--g~~l~s~s~  296 (299)
                      ...|.+++|+ ++++++++.|+.|++||+++++.              +..+..|..  .|++++|+|+  +++|++|+.
T Consensus       231 ~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~l~~~~~  307 (366)
T 3k26_A          231 RNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC--DIWYMRFSMDFWQKMLALGNQ  307 (366)
T ss_dssp             SSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC--CSSCCCCEECTTSSEEEEECT
T ss_pred             cceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC--cEEEEEEcCCCCCcEEEEEec
Confidence            8999999998 66899999999999999987644              778888887  8999999999  999999976


Q ss_pred             cc
Q 022303          297 LP  298 (299)
Q Consensus       297 ~~  298 (299)
                      .+
T Consensus       308 dg  309 (366)
T 3k26_A          308 VG  309 (366)
T ss_dssp             TS
T ss_pred             CC
Confidence            43

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.3e-26  Score=188.76  Aligned_cols=224  Identities=13%  Similarity=0.100  Sum_probs=177.3

Q ss_pred             hhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCe
Q 022303           36 FSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGV  115 (299)
Q Consensus        36 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i  115 (299)
                      ..+.+|.+.|+++++ ++++++++                ...|+.+++|  ++          ........+..|...|
T Consensus        12 ~~l~~h~~~v~~~~~-~~~~~l~s----------------~~~dg~v~vw--~~----------~~~~~~~~~~~~~~~v   62 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-VDDSKVAS----------------VSRDGTVRLW--SK----------DDQWLGTVVYTGQGFL   62 (313)
T ss_dssp             EEECCCSSCEEEEEE-EETTEEEE----------------EETTSEEEEE--EE----------SSSEEEEEEEECSSCE
T ss_pred             HHhhCCCCCcEEEEe-cCCCEEEE----------------EEcCCcEEEE--EC----------CCCEEEEEeecCCccE
Confidence            356689999999999 88888886                3367778888  32          1223345568899999


Q ss_pred             eEEEe-cCC-EEEEEeCCCcEEEEecCCc---eeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeeec
Q 022303          116 DQCRM-KRG-LILTGVGDKVMRLWSLEGY---KCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS  188 (299)
Q Consensus       116 ~~~~~-~~~-~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~  188 (299)
                      .++.| +++ +|++++.||.|++|++...   +.+..+..|...+. ++|  +++.++ ++.|+.|++||.......+..
T Consensus        63 ~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~  140 (313)
T 3odt_A           63 NSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQA  140 (313)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEEC
T ss_pred             EEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEeccc
Confidence            99999 555 9999999999999998754   55667776665554 777  566777 999999999994444455666


Q ss_pred             cCCccceeeeecc-CCCeEEEecCCCcEEEEEcCCcceeeeccc-cCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCce
Q 022303          189 REGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSRKCSQIIRM-HCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQR  266 (299)
Q Consensus       189 ~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  266 (299)
                      +...... +++.+ ++..+++++.|+.|++||.  .+....+.. |...|.+++|+|+..+++++.||.|++||++++++
T Consensus       141 ~~~~v~~-~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~  217 (313)
T 3odt_A          141 HNASVWD-AKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDV  217 (313)
T ss_dssp             CSSCEEE-EEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCE
T ss_pred             CCCceeE-EEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhh
Confidence            6665543 35555 7888999999999999994  455666665 88999999999994499999999999999999999


Q ss_pred             EEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          267 VATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       267 ~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +..+..|..  +|++++|+|++ .|++++.
T Consensus       218 ~~~~~~~~~--~i~~~~~~~~~-~l~~~~~  244 (313)
T 3odt_A          218 LRTYEGHES--FVYCIKLLPNG-DIVSCGE  244 (313)
T ss_dssp             EEEEECCSS--CEEEEEECTTS-CEEEEET
T ss_pred             hhhhhcCCc--eEEEEEEecCC-CEEEEec
Confidence            999998888  99999999999 5777764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.94  E-value=2e-25  Score=189.81  Aligned_cols=190  Identities=17%  Similarity=0.231  Sum_probs=152.2

Q ss_pred             EEeeccccCeeEEEe-c-CC-EEEEEeCCCcEEEEecCCceeEEEec-------------CCC-ceeEEEEec-CCCEEE
Q 022303          106 DQWKAHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEGYKCVEEYS-------------LPN-AASLVDFDF-DESKIV  167 (299)
Q Consensus       106 ~~~~~h~~~i~~~~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~-~~~~~~~~~-~~~~l~  167 (299)
                      ..+.+|.+.|+++.| + ++ +|++|+.||.|++||+.+++....+.             .|. .+..++|+| ++.+++
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  116 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT  116 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence            345789999999999 5 55 99999999999999999876544433             244 455599999 677787


Q ss_pred             -EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCC---eEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCC
Q 022303          168 -GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDP---EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE  243 (299)
Q Consensus       168 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~  243 (299)
                       ++.|+.|++||+.+.+.............+++.+.++   .+++++.++.|++||+++++.+..+..|...|.+++|+|
T Consensus       117 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~  196 (408)
T 4a11_B          117 SSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP  196 (408)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS
T ss_pred             EEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC
Confidence             8899999999999876433222222223456666544   699999999999999999999999989999999999999


Q ss_pred             C-C-eEEEEeCCCcEEEEeCCCCc-eEEEe---------------eccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          244 D-Q-LIISGSSLGSIAISGLSSDQ-RVATL---------------RSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       244 ~-~-~l~~~~~dg~i~iwd~~~~~-~~~~~---------------~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      + . ++++++.||.|++||+++++ ++..+               ..|..  .|.+++|+|++++|++++.-
T Consensus       197 ~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d  266 (408)
T 4a11_B          197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG--KVNGLCFTSDGLHLLTVGTD  266 (408)
T ss_dssp             SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS--CEEEEEECTTSSEEEEEETT
T ss_pred             CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccC--ceeEEEEcCCCCEEEEecCC
Confidence            8 5 69999999999999998765 44554               34555  89999999999999999854

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.94  E-value=2.6e-25  Score=189.51  Aligned_cols=188  Identities=12%  Similarity=0.133  Sum_probs=154.1

Q ss_pred             eEEeeccccCeeEEEe-c-CC-EEEEEeCCCcEEEEecCCc-------eeEEEecCCCceeE-EEEecCC-CEEE-EEcC
Q 022303          105 IDQWKAHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEGY-------KCVEEYSLPNAASL-VDFDFDE-SKIV-GLIG  171 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~-~~-~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~-~~~~~~~-~~l~-~~~d  171 (299)
                      +..+.+|.+.|+++.| + ++ +|++|+.||+|++||+.++       +++..+..|...+. ++|+|++ ++++ ++.|
T Consensus        74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d  153 (402)
T 2aq5_A           74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD  153 (402)
T ss_dssp             CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred             CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence            3456899999999999 5 55 9999999999999999987       56777887765554 9999998 5777 9999


Q ss_pred             CeEEEEecCCceeeee----ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeec-cccCCc-eeEEEeCCC-
Q 022303          172 TRICIWRRNGLRSVFP----SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII-RMHCAP-VTSLSLSED-  244 (299)
Q Consensus       172 ~~i~v~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~-i~~~~~~~~-  244 (299)
                      +.|++||+++++....    .+.+.+. .++|++++..+++++.|+.|++||+++++.+..+ ..|.+. +.++.|+|+ 
T Consensus       154 g~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (402)
T 2aq5_A          154 NVILVWDVGTGAAVLTLGPDVHPDTIY-SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEG  232 (402)
T ss_dssp             SCEEEEETTTTEEEEEECTTTCCSCEE-EEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTT
T ss_pred             CEEEEEECCCCCccEEEecCCCCCceE-EEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCC
Confidence            9999999998864333    3444433 5689999999999999999999999999998888 677765 899999999 


Q ss_pred             CeEEEE---eCCCcEEEEeCCCCce-EEEee-ccCCCCcEEEEEccCCCCeEEeee
Q 022303          245 QLIISG---SSLGSIAISGLSSDQR-VATLR-STDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       245 ~~l~~~---~~dg~i~iwd~~~~~~-~~~~~-~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      .+|++|   +.|+.|++||+++++. +.... .+..  .+.+++|+|++++|++++
T Consensus       233 ~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~g  286 (402)
T 2aq5_A          233 KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSS--GVLLPFFDPDTNIVYLCG  286 (402)
T ss_dssp             EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCS--SCEEEEEETTTTEEEEEE
T ss_pred             cEEEEeccCCCCceEEEEcCccccCCceEEeccCCC--ceeEEEEcCCCCEEEEEE
Confidence            888888   7899999999998764 33333 2333  799999999999997544

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.94  E-value=5.6e-26  Score=203.33  Aligned_cols=229  Identities=14%  Similarity=0.120  Sum_probs=186.3

Q ss_pred             CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccC-eeEE
Q 022303           40 GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVG-VDQC  118 (299)
Q Consensus        40 ~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~-i~~~  118 (299)
                      .|.+.|.+++|+|++++++..                 .+..+++|  ++....      ........+.+|.+. |+++
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~-----------------~~~~v~v~--~~~~~~------~~~~~~~~~~~h~~~~v~~~   70 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYP-----------------CGKSAFVR--CLDDGD------SKVPPVVQFTGHGSSVVTTV   70 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEE-----------------ETTEEEEE--ECCSSC------CSSCSEEEECTTTTSCEEEE
T ss_pred             CccCceeEEEECCCCCEEEEe-----------------cCCeEEEE--ECCCCC------CccccceEEecCCCceEEEE
Confidence            688899999999999998861                 23455666  222110      000235667899999 9999


Q ss_pred             Ee-c--CC-EEEEEeCCCcEEEEecCCc--------eeEEEecCCCcee-EEEEecCCCEEE-EEcC----CeEEEEecC
Q 022303          119 RM-K--RG-LILTGVGDKVMRLWSLEGY--------KCVEEYSLPNAAS-LVDFDFDESKIV-GLIG----TRICIWRRN  180 (299)
Q Consensus       119 ~~-~--~~-~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d----~~i~v~d~~  180 (299)
                      .| +  ++ +|++|+.||.|++||+.++        +....+..+...+ .++|+|+++.++ ++.+    +.|++||..
T Consensus        71 ~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~  150 (615)
T 1pgu_A           71 KFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG  150 (615)
T ss_dssp             EECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC
T ss_pred             EECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC
Confidence            99 6  66 9999999999999999855        6677777665555 499999999999 7766    699999965


Q ss_pred             CceeeeeccCCccceeeeeccCCC-eEEEecCCCcEEEEEcCCcceeeeccccCC---ceeEEEeCCC--CeEEEEeCCC
Q 022303          181 GLRSVFPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIRMHCA---PVTSLSLSED--QLIISGSSLG  254 (299)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~i~~~~~~~~--~~l~~~~~dg  254 (299)
                      .....+..+...+. .++++++++ .+++++.|+.|++||+.+++.+..+..|..   .|.+++|+|+  ++|++++.||
T Consensus       151 ~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  229 (615)
T 1pgu_A          151 NSLGEVSGHSQRIN-ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR  229 (615)
T ss_dssp             CEEEECCSCSSCEE-EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC
T ss_pred             CcceeeecCCccEE-EEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCC
Confidence            55556666666544 568889888 699999999999999999999999988988   9999999987  7899999999


Q ss_pred             cEEEEeCCCCceEEEe-e---ccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          255 SIAISGLSSDQRVATL-R---STDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       255 ~i~iwd~~~~~~~~~~-~---~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      .|++||+++++.+..+ .   .|..  .|.+++|+ ++++|++++.-
T Consensus       230 ~i~vwd~~~~~~~~~~~~~~~~~~~--~v~~~~~~-~~~~l~~~~~d  273 (615)
T 1pgu_A          230 KISCFDGKSGEFLKYIEDDQEPVQG--GIFALSWL-DSQKFATVGAD  273 (615)
T ss_dssp             CEEEEETTTCCEEEECCBTTBCCCS--CEEEEEES-SSSEEEEEETT
T ss_pred             eEEEEECCCCCEeEEecccccccCC--ceEEEEEc-CCCEEEEEcCC
Confidence            9999999999999999 5   6666  89999999 99999998853

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.94  E-value=1.4e-26  Score=207.24  Aligned_cols=264  Identities=13%  Similarity=0.069  Sum_probs=204.2

Q ss_pred             cchhccCcHHHH----HHHhhccCccch-hhHHHhhh--hHHHHhh-----hhhHHHHHHh--------hhcCCCCCCCc
Q 022303           21 RATIESLNGDII----CMIFSSLGFFDL-VRCSAVCK--SWNAIIN-----RCKLLQLLYC--------KLHGFSNTSGS   80 (299)
Q Consensus        21 ~~~~~~~~~~~~----~~i~~~~~h~~~-v~~~~~~~--~~~~l~~-----~~~~w~~~~~--------~~~~~~~~~d~   80 (299)
                      ...+.+|+.+..    ..+..+.+|.+. |.+++|+|  +++++++     .+.+|+....        ......  ...
T Consensus        38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~--~~~  115 (615)
T 1pgu_A           38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF--QVL  115 (615)
T ss_dssp             TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE--ECC
T ss_pred             CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchh--hcc
Confidence            457888998877    677788899999 99999999  9999987     4566765211        000000  001


Q ss_pred             hhhhhhhhhhhccccceeecCce---------------eeEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCc
Q 022303           81 SMRLHLEELAMKHHRFALEEGRI---------------DIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGY  142 (299)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~g~~---------------~~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~  142 (299)
                      .  -.+.++.++|+++.++.+..               .+..+.+|...|.++.| +++  ++++++.|+.|++||..++
T Consensus       116 ~--~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~  193 (615)
T 1pgu_A          116 A--GPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF  193 (615)
T ss_dssp             S--SCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB
T ss_pred             c--ccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc
Confidence            1  11235566777766654432               25677899999999999 555  7999999999999999999


Q ss_pred             eeEEEecCCCc----eeEEEEecC-CCEEE-EEcCCeEEEEecCCceeeee------ccCCccceeeeeccCCCeEEEec
Q 022303          143 KCVEEYSLPNA----ASLVDFDFD-ESKIV-GLIGTRICIWRRNGLRSVFP------SREGTFMKGLCMRYFDPEAVVGC  210 (299)
Q Consensus       143 ~~~~~~~~~~~----~~~~~~~~~-~~~l~-~~~d~~i~v~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~s~~  210 (299)
                      +.+..+..|..    +..++|+|+ +++++ ++.|+.|++||+.+++....      .+...+. .++++ ++..+++++
T Consensus       194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~-~~~~~-~~~~l~~~~  271 (615)
T 1pgu_A          194 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF-ALSWL-DSQKFATVG  271 (615)
T ss_dssp             EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEE-EEEES-SSSEEEEEE
T ss_pred             ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceE-EEEEc-CCCEEEEEc
Confidence            99999997765    555999999 99998 99999999999988764332      3333333 45677 788899999


Q ss_pred             CCCcEEEEEcCCcceeeecccc----CCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccC
Q 022303          211 EDGTARVFDMYSRKCSQIIRMH----CAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQ  286 (299)
Q Consensus       211 ~d~~i~iwd~~~~~~~~~~~~~----~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  286 (299)
                      .|+.|++||+++++.+..+..+    ...+.++.+..+.++++++.||.|++||+++++.+..+..|..  .|.+++| |
T Consensus       272 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~--~v~~~~~-~  348 (615)
T 1pgu_A          272 ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNK--GITALTV-N  348 (615)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSS--CEEEEET-T
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCC--CEEEEEe-c
Confidence            9999999999999988888755    4678888886448999999999999999999999999988887  8999998 7


Q ss_pred             CCCeEEeeec
Q 022303          287 FLHMLFFLCF  296 (299)
Q Consensus       287 ~g~~l~s~s~  296 (299)
                      +   |++++.
T Consensus       349 ~---l~~~~~  355 (615)
T 1pgu_A          349 P---LISGSY  355 (615)
T ss_dssp             T---TEEEET
T ss_pred             C---cEEECC
Confidence            7   555553

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.8e-25  Score=204.56  Aligned_cols=184  Identities=9%  Similarity=0.035  Sum_probs=155.0

Q ss_pred             eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceee
Q 022303          109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV  185 (299)
Q Consensus       109 ~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~  185 (299)
                      .+|.+.|++++| +++ +|++|+.||+|++|+..+.+....+.....+..++|+| +++|+ ++.|++|++||+.+++..
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~   92 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVL   92 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEE
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEE
Confidence            589999999999 666 99999999999999999888877766556677799999 77777 999999999999887532


Q ss_pred             ee-ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCccee-----------eeccccCCceeEEEeCCC--CeEEEEe
Q 022303          186 FP-SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS-----------QIIRMHCAPVTSLSLSED--QLIISGS  251 (299)
Q Consensus       186 ~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~i~~~~~~~~--~~l~~~~  251 (299)
                      .. .+.+. ...+++++++.++++|+.||.|++||+++++..           ..+.+|.++|.+++|+|+  ..+++|+
T Consensus        93 ~~~~~~~~-V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~  171 (902)
T 2oaj_A           93 TTVFVPGK-ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY  171 (902)
T ss_dssp             EEEECSSC-EEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred             EEEcCCCC-EEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe
Confidence            21 23333 335689999999999999999999999987653           234578899999999996  7899999


Q ss_pred             CCCcEEEEeCCCCceEEEeecc------------------CCCCcEEEEEccCCCCeEEeeecc
Q 022303          252 SLGSIAISGLSSDQRVATLRST------------------DCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       252 ~dg~i~iwd~~~~~~~~~~~~~------------------~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      .||.| +||+++++++..+..+                  ..  .|++++|+|+|++|++|+.-
T Consensus       172 ~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~--~V~~v~fspdg~~lasgs~D  232 (902)
T 2oaj_A          172 EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP--KVIQSLYHPNSLHIITIHED  232 (902)
T ss_dssp             SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC--CEEEEEECTTSSEEEEEETT
T ss_pred             CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC--CeEEEEEcCCCCEEEEEECC
Confidence            99999 9999999999888765                  23  79999999999999999864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.94  E-value=8.4e-26  Score=187.93  Aligned_cols=229  Identities=10%  Similarity=0.007  Sum_probs=173.7

Q ss_pred             cCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEE
Q 022303           39 LGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQC  118 (299)
Q Consensus        39 ~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~  118 (299)
                      .+|.+.|.+++|+|+++++++                ...|+.+++|..  ....       .......+.+|...|.++
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~----------------~~~d~~v~iw~~--~~~~-------~~~~~~~~~~~~~~v~~~   62 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLI----------------TSWDGSLTVYKF--DIQA-------KNVDLLQSLRYKHPLLCC   62 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEE----------------EETTSEEEEEEE--ETTT-------TEEEEEEEEECSSCEEEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEE----------------EcCCCeEEEEEe--CCCC-------ccccceeeeecCCceEEE
Confidence            379999999999999998886                225677777732  2111       011234456899999999


Q ss_pred             Ee-c-CC-EEEEEeCCCcEEEEec-CCceeEEEecC--CCcee-EEEEecCCCEEE-EEcCCeEEEEecCC---------
Q 022303          119 RM-K-RG-LILTGVGDKVMRLWSL-EGYKCVEEYSL--PNAAS-LVDFDFDESKIV-GLIGTRICIWRRNG---------  181 (299)
Q Consensus       119 ~~-~-~~-~l~s~~~dg~i~iwd~-~~~~~~~~~~~--~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~~---------  181 (299)
                      .| + +. +|++|+.||.|++||+ .+++. ..+..  |...+ .++|+| ++.++ ++.|+.|++||+++         
T Consensus        63 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  140 (342)
T 1yfq_A           63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVK  140 (342)
T ss_dssp             EEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred             EECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccccc
Confidence            99 4 44 7999999999999999 87765 55565  65544 599999 88888 99999999999886         


Q ss_pred             ceeeeec-cCCccceeeeeccCCCeEEEecCCCcEEEEEcCC-cce--eeeccccCCceeEEEeCC-C-CeEEEEeCCCc
Q 022303          182 LRSVFPS-REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS-RKC--SQIIRMHCAPVTSLSLSE-D-QLIISGSSLGS  255 (299)
Q Consensus       182 ~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg~  255 (299)
                      .+..... +...   +.++.+.+..+++++.|+.|++||+++ +..  ......|...|.+++|+| + +++++++.||.
T Consensus       141 ~~~~~~~~~~~~---v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~  217 (342)
T 1yfq_A          141 NLNSNNTKVKNK---IFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR  217 (342)
T ss_dssp             ESCSSSSSSCCC---EEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred             CCeeeEEeeCCc---eEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence            4322111 2222   334444444499999999999999997 543  233346788999999999 8 99999999999


Q ss_pred             EEEEeCCCC------ceEEEeeccCC-------CCcEEEEEccCCCCeEEeeecc
Q 022303          256 IAISGLSSD------QRVATLRSTDC-------TGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       256 i~iwd~~~~------~~~~~~~~~~~-------~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      |++|+++..      +....+..|..       ...|.+++|+|++++|++|+.-
T Consensus       218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  272 (342)
T 1yfq_A          218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD  272 (342)
T ss_dssp             EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT
T ss_pred             EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC
Confidence            999999887      77888887743       1279999999999999999854

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.94  E-value=1.4e-24  Score=187.14  Aligned_cols=185  Identities=8%  Similarity=0.116  Sum_probs=148.0

Q ss_pred             ccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCce-----------eEEEecCCC-------------ceeEEEEecCC
Q 022303          110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK-----------CVEEYSLPN-------------AASLVDFDFDE  163 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~-------------~~~~~~~~~~~  163 (299)
                      .|.+.|++++| +++ +|++|+.||.|++||+.+++           ....+..|.             .+..++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            46889999999 666 99999999999999999876           577788774             34559999998


Q ss_pred             --CEEE-EEcCCeEEEEecCCcee-----------------------------------------e-eeccCCccceeee
Q 022303          164 --SKIV-GLIGTRICIWRRNGLRS-----------------------------------------V-FPSREGTFMKGLC  198 (299)
Q Consensus       164 --~~l~-~~~d~~i~v~d~~~~~~-----------------------------------------~-~~~~~~~~~~~~~  198 (299)
                        ..++ ++.|+.|++||+.+...                                         . ...|...+. .++
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~  184 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN-SIS  184 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC-EEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE-EEE
Confidence              6777 99999999999876432                                         1 123444433 468


Q ss_pred             eccCCCeEEEecCCCcEEEEEcCC-cceee-------eccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCce--
Q 022303          199 MRYFDPEAVVGCEDGTARVFDMYS-RKCSQ-------IIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQR--  266 (299)
Q Consensus       199 ~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~-------~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~--  266 (299)
                      |++++..+++| .|+.|++||+++ ++.+.       .+..|...|.+++|+|+  .+|++|+.||.|++||+++++.  
T Consensus       185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            89999999998 799999999994 44444       35688999999999997  7999999999999999999886  


Q ss_pred             --EEEeeccCCC----------CcEEEEEccCCCCeEEeeec
Q 022303          267 --VATLRSTDCT----------GHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       267 --~~~~~~~~~~----------~~i~~~~~s~~g~~l~s~s~  296 (299)
                        +..+..+...          ..|.+++|+|+|++|++++.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  305 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY  305 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence              7788776531          16999999999999999875

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.9e-26  Score=196.30  Aligned_cols=177  Identities=9%  Similarity=0.024  Sum_probs=141.8

Q ss_pred             ccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCc------eeEEEEecCCCEEE-EEcCCeEEEEecC
Q 022303          110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA------ASLVDFDFDESKIV-GLIGTRICIWRRN  180 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~-~~~d~~i~v~d~~  180 (299)
                      .|...|.+++| |++ +|++++.||+|++||.+.  ++..+. |+.      +.+++|+|+|++|+ ++.||+|++||+.
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            56889999999 777 999999999999999654  666666 553      55699999999999 9999999999998


Q ss_pred             Cce---------eee----eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcce---eeec-cccCCceeEEEeCC
Q 022303          181 GLR---------SVF----PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC---SQII-RMHCAPVTSLSLSE  243 (299)
Q Consensus       181 ~~~---------~~~----~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~-~~~~~~i~~~~~~~  243 (299)
                      ++.         ..+    ..|.+.+. .++|+|++  +++++.|+.|++||+..++.   ...+ ..|...|.+++|+ 
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~-sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-  235 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVT-HIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-  235 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEE-EEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred             CCccccccceeeeeeecccccccccEE-EEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence            763         122    22233333 45888887  88899999999999987763   2455 3678899999999 


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEc--cCCCCeEEeeec
Q 022303          244 DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMY--PQFLHMLFFLCF  296 (299)
Q Consensus       244 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~--s~~g~~l~s~s~  296 (299)
                      ++.||+++ ++.|++||+.+++......+|..  .|..++|  +|+++.|++++.
T Consensus       236 g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~--~V~~va~~~s~d~~~La~a~e  287 (588)
T 2j04_A          236 DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLE--NFHIIPLNHEKESTILLMSNK  287 (588)
T ss_dssp             TTEEEEEC-SSEEEEEETTTTEEEEEECSCCS--CCCEEEETTCSSCEEEEECSS
T ss_pred             CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCc--eEEEEEeeeCCCCCEEEEEcC
Confidence            77888887 69999999987776444436777  8999999  999999998873

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=3.6e-24  Score=177.81  Aligned_cols=189  Identities=12%  Similarity=0.118  Sum_probs=154.2

Q ss_pred             EeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCc----eeEEEecCCCcee-EEEEec--CCCEEE-EEcCCeEEE
Q 022303          107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY----KCVEEYSLPNAAS-LVDFDF--DESKIV-GLIGTRICI  176 (299)
Q Consensus       107 ~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~-~~~~~~--~~~~l~-~~~d~~i~v  176 (299)
                      .+.+|.+.|+++.| +++ +|++|+.||.|++||+.++    +....+..|...+ .++|+|  ++++|+ ++.|+.|++
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            45799999999999 666 9999999999999999876    4666777776554 599999  588888 999999999


Q ss_pred             EecCCce-----------eeeeccCCccceeeeeccC--CCeEEEecCCCcEEEEEcCCcceeeecc-------------
Q 022303          177 WRRNGLR-----------SVFPSREGTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSRKCSQIIR-------------  230 (299)
Q Consensus       177 ~d~~~~~-----------~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------  230 (299)
                      ||+++..           ..+..+.+.+. .++++++  +..+++++.|+.|++||+++++.+..+.             
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLY-SVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EecCCCcccccccCcceeeeecccCCcee-EEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9998752           23344444443 4688888  8889999999999999999877654443             


Q ss_pred             ccCCceeEEEeCCC----CeEEEEeCCCcEEEEeCCCCce--EEEeeccCCCCcEEEEEccCCC----CeEEeeeccc
Q 022303          231 MHCAPVTSLSLSED----QLIISGSSLGSIAISGLSSDQR--VATLRSTDCTGHIICLMYPQFL----HMLFFLCFLP  298 (299)
Q Consensus       231 ~~~~~i~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~g----~~l~s~s~~~  298 (299)
                      .|...+.+++|+|+    .++++++.|+.+.+|+...++.  +..+..|..  .|++++|+|++    ++|++|+.-+
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~~p~~~~~~~~l~s~~~dg  240 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKS--LIRSISWAPSIGRWYQLIATGCKDG  240 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCS--CEEEEEECCCSSCSSEEEEEEETTS
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCc--ceeEEEECCCCCCcceEEEEEcCCC
Confidence            57788999999983    7899999999998888887765  677777777  99999999998    8999988643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=9.1e-25  Score=200.20  Aligned_cols=190  Identities=17%  Similarity=0.200  Sum_probs=155.5

Q ss_pred             EEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecC--CceeEEEecCCCcee-EEEEecC--CCEEE-EEcCCeEEEE
Q 022303          106 DQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLE--GYKCVEEYSLPNAAS-LVDFDFD--ESKIV-GLIGTRICIW  177 (299)
Q Consensus       106 ~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~-~~~~~~~--~~~l~-~~~d~~i~v~  177 (299)
                      .++.+|.++|+++.| +++ +|++|+.||+|++||+.  +++.+..+..|...+ .++|+++  ++.++ ++.||.|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            456899999999999 566 99999999999999998  567778888776555 5999988  88888 9999999999


Q ss_pred             ecCCce----eeeeccCCccceeeeeccC--CCeEEEecCCCcEEEEEcCCcc--eeeeccccCCceeEEEeCC------
Q 022303          178 RRNGLR----SVFPSREGTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSE------  243 (299)
Q Consensus       178 d~~~~~----~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~------  243 (299)
                      |+.++.    ..+..+...+. .++++++  +..+++|+.||.|++||++++.  ....+..|...|.+++|+|      
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~-~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~  161 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred             ECCCCcccccccccCCCCCeE-EEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence            998874    23334444443 5688888  8889999999999999998873  3345568899999999999      


Q ss_pred             -------C-CeEEEEeCCCcEEEEeCCCC----ceEEEeeccCCCCcEEEEEccCC---CCeEEeeeccc
Q 022303          244 -------D-QLIISGSSLGSIAISGLSSD----QRVATLRSTDCTGHIICLMYPQF---LHMLFFLCFLP  298 (299)
Q Consensus       244 -------~-~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~i~~~~~s~~---g~~l~s~s~~~  298 (299)
                             + .++++|+.||.|++||++++    ..+..+..|..  +|++++|+|+   +++|++|+.-+
T Consensus       162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~~~~l~s~s~Dg  229 (753)
T 3jro_A          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD--WVRDVAWSPTVLLRSYLASVSQDR  229 (753)
T ss_dssp             -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS--CEEEEEECCCCSSSEEEEEEESSS
T ss_pred             cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC--cEEEEEeccCCCCCCEEEEEecCC
Confidence                   5 89999999999999999877    56677778887  9999999999   89999998643

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.93  E-value=1.9e-25  Score=187.93  Aligned_cols=196  Identities=14%  Similarity=0.114  Sum_probs=147.2

Q ss_pred             CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEE
Q 022303           40 GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCR  119 (299)
Q Consensus        40 ~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~  119 (299)
                      ++.+.+++++|+|++++++..              ....|.++++|..  ....          .+..+ .|.+.|.+++
T Consensus       131 ~~~~~~~~v~fSpDg~~la~a--------------s~~~d~~i~iwd~--~~~~----------~~~~~-~~~~~V~~v~  183 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIA--------------SSKVPAIMRIIDP--SDLT----------EKFEI-ETRGEVKDLH  183 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEE--------------ESCSSCEEEEEET--TTTE----------EEEEE-ECSSCCCEEE
T ss_pred             CcccCEEEEEEcCCCCEEEEE--------------ECCCCCEEEEeEC--CCCc----------EEEEe-CCCCceEEEE
Confidence            345567889999999987630              0225678888833  2211          22333 4778899999


Q ss_pred             e-cCC-EEEEEeCCCcEEEEecCCceeEEE--ecCCCceeE-EEEecCCCEEE-EEcCC----eEEEEecCCcee-----
Q 022303          120 M-KRG-LILTGVGDKVMRLWSLEGYKCVEE--YSLPNAASL-VDFDFDESKIV-GLIGT----RICIWRRNGLRS-----  184 (299)
Q Consensus       120 ~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~-~~~~~~~~~l~-~~~d~----~i~v~d~~~~~~-----  184 (299)
                      | |++ ++++++. +.+.+|+..+++.+..  ...|...+. ++|+|+++.++ ++.++    .++.|++.....     
T Consensus       184 fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~  262 (365)
T 4h5i_A          184 FSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRS  262 (365)
T ss_dssp             ECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEE
T ss_pred             EccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceee
Confidence            9 677 7888775 5566777777766543  334555554 99999999998 77776    688899876542     


Q ss_pred             -eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeec-cccCCceeEEEeCCC-CeEEEEeCCCcEEEEeC
Q 022303          185 -VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII-RMHCAPVTSLSLSED-QLIISGSSLGSIAISGL  261 (299)
Q Consensus       185 -~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~  261 (299)
                       .+..+...+. .++++|++.+|++|+.|+.|++||+++++++..+ .+|..+|++++|+|| ++||+|+.|++|+|||+
T Consensus       263 ~~~~~~~~~V~-~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          263 KQVTNRFKGIT-SMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             EEEESSCSCEE-EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             eeecCCCCCeE-eEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence             2333444433 5689999999999999999999999999998875 689999999999999 99999999999999999


Q ss_pred             CCC
Q 022303          262 SSD  264 (299)
Q Consensus       262 ~~~  264 (299)
                      ..+
T Consensus       342 p~~  344 (365)
T 4h5i_A          342 PLN  344 (365)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=8.1e-26  Score=188.62  Aligned_cols=250  Identities=10%  Similarity=-0.027  Sum_probs=172.7

Q ss_pred             CCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcccc
Q 022303           16 RSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHR   95 (299)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (299)
                      ..++.+.++++|+.+....+..+.  ...|.++.++|+   +++                ...|.++++|..  ......
T Consensus        52 ~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s----------------~s~D~~i~~w~~--~~~~~~  108 (343)
T 3lrv_A           52 MCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IIS----------------RGPCNRLLLLYP--GNQITI  108 (343)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEE----------------ECSTTEEEEEET--TTEEEE
T ss_pred             EEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEE----------------ecCCCeEEEEEc--cCceEE
Confidence            344567788889887765554443  456778888887   554                336777777732  111000


Q ss_pred             ceeecCceeeEEeeccccCeeEEEe-c--CC-EEEEEeCCCcEEEEecCCceeEEEecCC--CceeEEEEecCCCEEE-E
Q 022303           96 FALEEGRIDIDQWKAHSVGVDQCRM-K--RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP--NAASLVDFDFDESKIV-G  168 (299)
Q Consensus        96 ~~l~~g~~~~~~~~~h~~~i~~~~~-~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~-~  168 (299)
                      ..+..+........+|.++|.++.+ +  ++ ++++++.||+|++||+.+++++.....+  ..+..++|+|++.+++ +
T Consensus       109 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg  188 (343)
T 3lrv_A          109 LDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALY  188 (343)
T ss_dssp             EETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred             eecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence            0111111111222377789999999 5  55 9999999999999999999987766433  2455699999999999 8


Q ss_pred             EcCCeEEEEecCCceee---eec-cCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc---cCCcee--EE
Q 022303          169 LIGTRICIWRRNGLRSV---FPS-REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM---HCAPVT--SL  239 (299)
Q Consensus       169 ~~d~~i~v~d~~~~~~~---~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~i~--~~  239 (299)
                      +.|+.|++||++++...   +.. |.+.+. .++|++++..|++++. +.|++||+++++.+..+..   |...+.  ++
T Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~-~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  266 (343)
T 3lrv_A          189 SPDGILDVYNLSSPDQASSRFPVDEEAKIK-EVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTY  266 (343)
T ss_dssp             CTTSCEEEEESSCTTSCCEECCCCTTSCEE-EEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEE
T ss_pred             cCCCEEEEEECCCCCCCccEEeccCCCCEE-EEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEE
Confidence            99999999999987633   444 555444 5689999999999994 5999999999877655543   334444  69


Q ss_pred             EeCCC-CeEEEEeC-CCcEEEEeCCCCceEEEeeccCCCCcEEEEEccC---CCCeEEeeec
Q 022303          240 SLSED-QLIISGSS-LGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQ---FLHMLFFLCF  296 (299)
Q Consensus       240 ~~~~~-~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~---~g~~l~s~s~  296 (299)
                      +|+|+ ++|++++. |+.|++|++.+.......    .  ++..++|++   +++.+++++.
T Consensus       267 ~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~l~~~~~  322 (343)
T 3lrv_A          267 DIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----D--EESALCLQSDTADFTDMDVVCG  322 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----E--EEEECCC----CCCCEEEEEEE
T ss_pred             EECCCCCEEEEecCCCCcEEEEEEcccccceEe----c--CceeEecCccccccceeEEEec
Confidence            99999 99999998 999999999765443332    2  677777777   7777776654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=2.5e-24  Score=174.95  Aligned_cols=199  Identities=12%  Similarity=0.006  Sum_probs=138.2

Q ss_pred             hhhhccc----cceeecCceeeEEeeccccCeeEEEecCCEEEEEe---CCCcEEEEec-CCceeEEEecCCCceeE-EE
Q 022303           88 ELAMKHH----RFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGV---GDKVMRLWSL-EGYKCVEEYSLPNAASL-VD  158 (299)
Q Consensus        88 ~~~~~~~----~~~l~~g~~~~~~~~~h~~~i~~~~~~~~~l~s~~---~dg~i~iwd~-~~~~~~~~~~~~~~~~~-~~  158 (299)
                      .+.++|+    ++.++.        .+|...|..+  +++.++..+   .|+.|++|++ .+++.+..+..|..... ++
T Consensus       116 sla~spd~~~~~~~l~s--------~g~~~~v~~l--~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~  185 (356)
T 2w18_A          116 ALFCSSDDESEKQVLLK--------SGNIKAVLGL--TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILT  185 (356)
T ss_dssp             EECC------CCEEEEE--------EEEEEEEEEE--TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEE
T ss_pred             EEEECCCccccccEEEe--------CCCeEEEEec--CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEE
Confidence            5566666    555544        2344444443  667555554   5999999999 45888888877765554 88


Q ss_pred             Eec---CCCEEE-EEcCCeEEEEecCCcee--eeeccCCccce--eeeeccCCCeE------------EEecCCCcEEEE
Q 022303          159 FDF---DESKIV-GLIGTRICIWRRNGLRS--VFPSREGTFMK--GLCMRYFDPEA------------VVGCEDGTARVF  218 (299)
Q Consensus       159 ~~~---~~~~l~-~~~d~~i~v~d~~~~~~--~~~~~~~~~~~--~~~~~~~~~~l------------~s~~~d~~i~iw  218 (299)
                      |++   ++..|+ ++.|++|++||+.+++.  .+..+......  .++++|++..+            ++|+.|++|++|
T Consensus       186 fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW  265 (356)
T 2w18_A          186 FAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI  265 (356)
T ss_dssp             EEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred             eeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence            888   778999 89999999999998863  34333222222  23677777654            678899999999


Q ss_pred             EcCCcceeeec-----cccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022303          219 DMYSRKCSQII-----RMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       219 d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      |..+++.+..+     .+|...+.+..++ +.++++++.|++|+|||+.++++++++.+|... .+.+++|+|||++|++
T Consensus       266 d~~tgk~l~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~-vvs~vafSPDG~~LaS  343 (356)
T 2w18_A          266 NPKTTLSVGVMLYCLPPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ-HWSFVKWSGTDSHLLA  343 (356)
T ss_dssp             ETTTTEEEEEEEECCCTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCSEEEEECCC--C-CCCEEEECSSSSEEEE
T ss_pred             ECCCCEEEEEEEeeccCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCC-eEEEEEECCCCCEEEE
Confidence            99999887654     2555544444433 368999999999999999999999999988762 3446899999999999


Q ss_pred             eeccc
Q 022303          294 LCFLP  298 (299)
Q Consensus       294 ~s~~~  298 (299)
                      ||.-+
T Consensus       344 GS~D~  348 (356)
T 2w18_A          344 GQKDG  348 (356)
T ss_dssp             ECTTS
T ss_pred             EECCC
Confidence            98643

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=7.3e-24  Score=183.21  Aligned_cols=185  Identities=8%  Similarity=0.051  Sum_probs=154.4

Q ss_pred             eccccCeeEEEe-cCC-EE-EEEeCCCcEEEEecC--CceeEEEec---CCCceeEEEEecCCCEEE-EEcCCeEEEEec
Q 022303          109 KAHSVGVDQCRM-KRG-LI-LTGVGDKVMRLWSLE--GYKCVEEYS---LPNAASLVDFDFDESKIV-GLIGTRICIWRR  179 (299)
Q Consensus       109 ~~h~~~i~~~~~-~~~-~l-~s~~~dg~i~iwd~~--~~~~~~~~~---~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~  179 (299)
                      .+|.+.|.++.| +++ +| ++++.||.|++||+.  +++++..+.   ....+..++|+|++++|+ ++.++.+++|++
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~  178 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI  178 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence            578889999999 666 64 899999999999999  888888775   234556699999999999 999999999999


Q ss_pred             CCcee------eeeccCCccceeeeeccC---CCeEEEecCCCcEEEEEcCCcceeee-ccccCCceeEEEeCCC-CeEE
Q 022303          180 NGLRS------VFPSREGTFMKGLCMRYF---DPEAVVGCEDGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSED-QLII  248 (299)
Q Consensus       180 ~~~~~------~~~~~~~~~~~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~-~~l~  248 (299)
                      .+...      .+..+.+.+. .++|+++   +..+++++.|+.|++||+++++.+.. +.+|...|.+++|+ + ++|+
T Consensus       179 ~~~~~~~~~~~~~~~h~~~v~-~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~  256 (450)
T 2vdu_B          179 NSIPEEKFTQEPILGHVSMLT-DVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL  256 (450)
T ss_dssp             TSCCCSSCCCCCSEECSSCEE-EEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred             CCcccccccceeeecccCceE-EEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE
Confidence            87642      3445555444 4688998   77899999999999999999988877 55899999999999 8 9999


Q ss_pred             EEeCCCcEEEEeCCCCceEEEeeccC-----------------------CCCcEEEEEccCCCCeEEeee
Q 022303          249 SGSSLGSIAISGLSSDQRVATLRSTD-----------------------CTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       249 ~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      +++.|+.|++||+++++++..+..+.                       ....|.+++|+|++++|++++
T Consensus       257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~  326 (450)
T 2vdu_B          257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV  326 (450)
T ss_dssp             EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence            99999999999999999988886321                       012799999999999999987

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=1.4e-24  Score=176.51  Aligned_cols=156  Identities=11%  Similarity=0.037  Sum_probs=120.2

Q ss_pred             EEeeccccCeeEEEe-c---CC-EEEEEeCCCcEEEEecCCceeEEEecCCC----ceeEEEEecCCCEE----------
Q 022303          106 DQWKAHSVGVDQCRM-K---RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN----AASLVDFDFDESKI----------  166 (299)
Q Consensus       106 ~~~~~h~~~i~~~~~-~---~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~l----------  166 (299)
                      ..+.+|...+..++| +   ++ +|++|+.|++|+|||+.+++++.++..+.    .+..++|+|++..+          
T Consensus       172 ~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w  251 (356)
T 2w18_A          172 ENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKE  251 (356)
T ss_dssp             EEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------
T ss_pred             eeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcc
Confidence            345678888888777 3   33 99999999999999999999999998543    23347899999876          


Q ss_pred             --E-EEcCCeEEEEecCCceeeee----ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCcee-E
Q 022303          167 --V-GLIGTRICIWRRNGLRSVFP----SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVT-S  238 (299)
Q Consensus       167 --~-~~~d~~i~v~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~-~  238 (299)
                        + ++.|++|++||..+++....    ...++....++.++.+..+++++.|++|++||+.+++++.++.+|...+. .
T Consensus       252 ~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~  331 (356)
T 2w18_A          252 SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSF  331 (356)
T ss_dssp             ------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCE
T ss_pred             eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEE
Confidence              4 67789999999998864311    12233222334455567789999999999999999999999988877655 6


Q ss_pred             EEeCCC-CeEEEEeCCCcEEEEeC
Q 022303          239 LSLSED-QLIISGSSLGSIAISGL  261 (299)
Q Consensus       239 ~~~~~~-~~l~~~~~dg~i~iwd~  261 (299)
                      ++|+|+ ++|++|+.|++|+|||+
T Consensus       332 vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          332 VKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEECCCCCEEEEEECCCcEEEecC
Confidence            899999 99999999999999996

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.93  E-value=6.4e-24  Score=182.55  Aligned_cols=189  Identities=14%  Similarity=0.198  Sum_probs=155.1

Q ss_pred             eEEeeccccCeeEEEe-cC-C-EEEEEeCCCcEEEEecCC----------ceeEEEecCCCceeE-EEEecCCC-EEE-E
Q 022303          105 IDQWKAHSVGVDQCRM-KR-G-LILTGVGDKVMRLWSLEG----------YKCVEEYSLPNAASL-VDFDFDES-KIV-G  168 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~-~-~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~-~~~~~~~~-~l~-~  168 (299)
                      ......|.+.|+++.| ++ + +|++++.||.|++||+.+          .+.+..+..|...+. ++|+|++. +|+ +
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            4556789999999999 54 3 899999999999999987          567777887765554 99999988 777 8


Q ss_pred             EcCCeEEEEecCCce---------eeeeccCCccceeeeecc-CCCeEEEecCCCcEEEEEcCCc---ceeeeccccCCc
Q 022303          169 LIGTRICIWRRNGLR---------SVFPSREGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSR---KCSQIIRMHCAP  235 (299)
Q Consensus       169 ~~d~~i~v~d~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~  235 (299)
                      +.||.|++||+....         ..+..+...+. .++|++ .+..+++++.|+.|++||++++   +.+..+..|...
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  279 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE-DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE  279 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEE-EEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEe-eeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence            999999999998732         22334444433 457888 4556889999999999999987   566777789999


Q ss_pred             eeEEEeCCC-C-eEEEEeCCCcEEEEeCCC-CceEEEeeccCCCCcEEEEEccCCCC-eEEeeec
Q 022303          236 VTSLSLSED-Q-LIISGSSLGSIAISGLSS-DQRVATLRSTDCTGHIICLMYPQFLH-MLFFLCF  296 (299)
Q Consensus       236 i~~~~~~~~-~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~s~s~  296 (299)
                      |++++|+|+ . ++++|+.||.|++||+++ ++++..+..|..  .|.+++|+|+++ +|++++.
T Consensus       280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~--~v~~i~~sp~~~~~l~s~~~  342 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD--EIFQVQWSPHNETILASSGT  342 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSS--CEEEEEECSSCTTEEEEEET
T ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCC--CEEEEEECCCCCCEEEEEeC
Confidence            999999998 4 799999999999999998 567888988887  999999999996 5777764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.93  E-value=6.8e-24  Score=177.77  Aligned_cols=193  Identities=12%  Similarity=0.144  Sum_probs=148.8

Q ss_pred             eEEeeccccCeeEEEe-cC---C-EEEEEeCCCcEEEEecCC-ceeE-EEecCCCcee-EEEEecCCCEEE-EEcCCeEE
Q 022303          105 IDQWKAHSVGVDQCRM-KR---G-LILTGVGDKVMRLWSLEG-YKCV-EEYSLPNAAS-LVDFDFDESKIV-GLIGTRIC  175 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~---~-~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~  175 (299)
                      +..+++|.+.|++++| ++   + +|++|+.||.|++||+.+ ++.+ ..+..|...+ .++|+|++++|+ ++.|+.|+
T Consensus        32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~  111 (368)
T 3mmy_A           32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK  111 (368)
T ss_dssp             EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence            6677899999999999 55   4 999999999999999997 5554 6676665555 599999999999 99999999


Q ss_pred             EEecCCceee-eeccCCccceeeee--ccCCCeEEEecCCCcEEEEEcCCcceeeeccccC-------------------
Q 022303          176 IWRRNGLRSV-FPSREGTFMKGLCM--RYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-------------------  233 (299)
Q Consensus       176 v~d~~~~~~~-~~~~~~~~~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------------  233 (299)
                      +||+.+.... ...+...+. .++|  .+++..+++++.|+.|++||+++++.+..+..+.                   
T Consensus       112 iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (368)
T 3mmy_A          112 MWDLSSNQAIQIAQHDAPVK-TIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAER  190 (368)
T ss_dssp             EEETTTTEEEEEEECSSCEE-EEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGG
T ss_pred             EEEcCCCCceeeccccCceE-EEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCC
Confidence            9999987633 334444433 4567  7777789999999999999999887666554322                   


Q ss_pred             ----------------------CceeEEEeCCC-C----eEEEEeCCCcEEEEeCCCC---ceEEEeeccCCC-------
Q 022303          234 ----------------------APVTSLSLSED-Q----LIISGSSLGSIAISGLSSD---QRVATLRSTDCT-------  276 (299)
Q Consensus       234 ----------------------~~i~~~~~~~~-~----~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~-------  276 (299)
                                            ..+.++.+.++ .    .+++++.||.|++||++..   +.+..+..|...       
T Consensus       191 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (368)
T 3mmy_A          191 GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP  270 (368)
T ss_dssp             CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCC
T ss_pred             cEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccc
Confidence                                  22333444333 2    2999999999999999887   556777766531       


Q ss_pred             ---CcEEEEEccCCCCeEEeeeccc
Q 022303          277 ---GHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       277 ---~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                         .+|++++|+|++++|++|+.-+
T Consensus       271 ~~~~~v~~~~~sp~~~~l~s~~~dg  295 (368)
T 3mmy_A          271 QDIYAVNGIAFHPVHGTLATVGSDG  295 (368)
T ss_dssp             EEECCEEEEEECTTTCCEEEEETTS
T ss_pred             ccccceEEEEEecCCCEEEEEccCC
Confidence               0499999999999999998643

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.3e-25  Score=190.36  Aligned_cols=225  Identities=10%  Similarity=-0.025  Sum_probs=171.1

Q ss_pred             cCccchhhHHHhhhhHHHH-hhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEee--ccccCe
Q 022303           39 LGFFDLVRCSAVCKSWNAI-INRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWK--AHSVGV  115 (299)
Q Consensus        39 ~~h~~~v~~~~~~~~~~~l-~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~--~h~~~i  115 (299)
                      .+|.+.|.+++|+|+++.| ++                ...|+.+++|..  ..        .....++.+.  .|...|
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~----------------~~~dg~v~iwd~--~~--------~~~~~~~~~~~~~~~~~v  152 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIAC----------------ADSDKSLLVFDV--DK--------TSKNVLKLRKRFCFSKRP  152 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEE----------------EGGGTEEEEEEE--CS--------SSSSCEEEEEEEECSSCE
T ss_pred             CccCCceEEEEEcCCCCEEEEE----------------ECCCCeEEEEEC--cC--------CCCceeeeeecccCCCCc
Confidence            4678889999999999986 55                124566777732  20        0112233333  677899


Q ss_pred             eEEEe-cCC-EEEEEeCCCcEEEEecCCceeEE----EecCCCc-eeEEEEecC---CCEEE-EEcCCeEEEEecCCcee
Q 022303          116 DQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVE----EYSLPNA-ASLVDFDFD---ESKIV-GLIGTRICIWRRNGLRS  184 (299)
Q Consensus       116 ~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~-~~~~~~~~~---~~~l~-~~~d~~i~v~d~~~~~~  184 (299)
                      .++.| +++ +|++|+.||.+++|++.+++...    .+..|.. +..++|+|+   +++|+ ++.|+.|++||+.+...
T Consensus       153 ~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~  232 (450)
T 2vdu_B          153 NAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI  232 (450)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce
Confidence            99999 666 99999999999999998877543    5565654 445999999   88888 99999999999987753


Q ss_pred             e---eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc-------------------------cCCce
Q 022303          185 V---FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-------------------------HCAPV  236 (299)
Q Consensus       185 ~---~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------------------~~~~i  236 (299)
                      .   ...+.+.+. .++|+ ++..|++++.|+.|++||+++++.+..+..                         ....|
T Consensus       233 ~~~~~~~h~~~v~-~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  310 (450)
T 2vdu_B          233 VDKWLFGHKHFVS-SICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV  310 (450)
T ss_dssp             EEEECCCCSSCEE-EEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred             eeeeecCCCCceE-EEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence            3   234544433 45777 888899999999999999999988777652                         23568


Q ss_pred             eEEEeCCC-CeEEEEe-CCCcEEEEeC--CCC---ceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          237 TSLSLSED-QLIISGS-SLGSIAISGL--SSD---QRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       237 ~~~~~~~~-~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      .+++|+|+ +++++++ .|+.|++|++  .++   +.+..+..+ .  .|.+++|+|++.+++++
T Consensus       311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~--~v~~~~~~~~~~~v~~~  372 (450)
T 2vdu_B          311 SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-Y--NVISLSAHNDEFQVTLD  372 (450)
T ss_dssp             EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-S--CEEEEEEETTEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-C--ceEEEEecCCcEEEEEe
Confidence            99999999 8899888 8999999999  555   677778777 4  89999999965444443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.9e-24  Score=178.41  Aligned_cols=180  Identities=7%  Similarity=-0.036  Sum_probs=137.9

Q ss_pred             cCeeEEEecCCEEEEEeCCCcEEEEecC---------CceeEEEec-CC-CceeEEEEec--CCCEEE-EEcCCeEEEEe
Q 022303          113 VGVDQCRMKRGLILTGVGDKVMRLWSLE---------GYKCVEEYS-LP-NAASLVDFDF--DESKIV-GLIGTRICIWR  178 (299)
Q Consensus       113 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~---------~~~~~~~~~-~~-~~~~~~~~~~--~~~~l~-~~~d~~i~v~d  178 (299)
                      ..|.++.+.+. +++++.|++|++|+..         +++.+..+. .| ..+..++++|  ++++++ ++.|+.|++||
T Consensus        77 ~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd  155 (343)
T 3lrv_A           77 PNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQS  155 (343)
T ss_dssp             ECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEE
T ss_pred             CCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEE
Confidence            44555555333 9999999999999665         455455554 33 3466699999  999999 99999999999


Q ss_pred             cCCceeee--eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCccee-eeccc-cCCceeEEEeCCC-CeEEEEeCC
Q 022303          179 RNGLRSVF--PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS-QIIRM-HCAPVTSLSLSED-QLIISGSSL  253 (299)
Q Consensus       179 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~-~~~~i~~~~~~~~-~~l~~~~~d  253 (299)
                      ++++....  ..+.......++++|++..+++|+.|+.|++||+++++.+ ..+.. |..+|++++|+|+ .+|++++ |
T Consensus       156 ~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~  234 (343)
T 3lrv_A          156 YEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-D  234 (343)
T ss_dssp             SSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-S
T ss_pred             CCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-C
Confidence            99876432  2222222345789999999999999999999999999887 77877 9999999999999 8999999 5


Q ss_pred             CcEEEEeCCCCceEEEeec---cCCCCcEE--EEEccCCCCeEEeeec
Q 022303          254 GSIAISGLSSDQRVATLRS---TDCTGHII--CLMYPQFLHMLFFLCF  296 (299)
Q Consensus       254 g~i~iwd~~~~~~~~~~~~---~~~~~~i~--~~~~s~~g~~l~s~s~  296 (299)
                      +.|++||+++++.+..+..   +..  .+.  +++|+|+|++|++++-
T Consensus       235 ~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          235 QTVVCFDLRKDVGTLAYPTYTIPEF--KTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             SBEEEEETTSSTTCBSSCCCBC-------CCEEEEECTTSSEEEEEET
T ss_pred             CeEEEEEcCCCCcceeecccccccc--cccceEEEECCCCCEEEEecC
Confidence            5999999999887665554   222  333  6999999999999663

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.92  E-value=2e-24  Score=183.04  Aligned_cols=242  Identities=8%  Similarity=0.045  Sum_probs=183.6

Q ss_pred             CCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHH-hhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccce
Q 022303           19 KPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAI-INRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFA   97 (299)
Q Consensus        19 ~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l-~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (299)
                      ..+..+..|+.+....+..+..|. .+.+++|+|+++.+ ++                ...+..+++|  ++....    
T Consensus         9 ~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~----------------~~~d~~i~v~--d~~~~~----   65 (391)
T 1l0q_A            9 SESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVA----------------NAHSNDVSII--DTATNN----   65 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEE----------------EGGGTEEEEE--ETTTTE----
T ss_pred             CCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEE----------------CCCCCeEEEE--ECCCCe----
Confidence            345678899988776655555554 47899999999876 33                1134555666  322211    


Q ss_pred             eecCceeeEEeeccccCeeEEEe-cCC-EE-EEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEE-E-EEcCC
Q 022303           98 LEEGRIDIDQWKAHSVGVDQCRM-KRG-LI-LTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKI-V-GLIGT  172 (299)
Q Consensus        98 l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~-~~~d~  172 (299)
                            .+..+..+. .+.++.| +++ +| ++++.++.|++||+.+++.+..+..+..+..++|+|+++.+ + ++.++
T Consensus        66 ------~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  138 (391)
T 1l0q_A           66 ------VIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDK  138 (391)
T ss_dssp             ------EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTT
T ss_pred             ------EEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCC
Confidence                  233334444 8999999 555 55 55667799999999999999999888888789999999987 4 66699


Q ss_pred             eEEEEecCCceeeeeccCCccceeeeeccCCCeE-EEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEE
Q 022303          173 RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG  250 (299)
Q Consensus       173 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~  250 (299)
                      .|++||+.+++.......+.....+++++++..+ ++++.++.|++||+++++.+..+. +...+.+++|+|+ ++++++
T Consensus       139 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~  217 (391)
T 1l0q_A          139 TVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVT  217 (391)
T ss_dssp             EEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEE
T ss_pred             EEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEE
Confidence            9999999887643322222223457899999886 678889999999999988877774 5667999999999 888887


Q ss_pred             e---CCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          251 S---SLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       251 ~---~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      +   .++.|++||+++++.+..+..+.   .+.+++|+|+|++|+++
T Consensus       218 ~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s  261 (391)
T 1l0q_A          218 NVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVA  261 (391)
T ss_dssp             EECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEE
T ss_pred             ecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEE
Confidence            7   68999999999999998888765   68999999999988544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.92  E-value=2.1e-24  Score=185.42  Aligned_cols=244  Identities=9%  Similarity=0.030  Sum_probs=187.7

Q ss_pred             CcchhccCcHHHHHHHh-----hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccc
Q 022303           20 PRATIESLNGDIICMIF-----SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHH   94 (299)
Q Consensus        20 ~~~~~~~~~~~~~~~i~-----~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (299)
                      .+..+..|+.+....+.     .+.+|.+.|.+++++++++.+++                ...+..+++|  ++..   
T Consensus       142 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s----------------~~~d~~v~~~--d~~~---  200 (433)
T 3bws_A          142 EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVS----------------QMQANAVHVF--DLKT---  200 (433)
T ss_dssp             TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEE----------------EGGGTEEEEE--ETTT---
T ss_pred             CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEE----------------ECCCCEEEEE--ECCC---
Confidence            34568888887665443     44578889999999999888876                1134555666  3221   


Q ss_pred             cceeecCceeeEEeeccccCeeEEEe-cCC-EE-EEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EE-
Q 022303           95 RFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LI-LTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-  169 (299)
Q Consensus        95 ~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-  169 (299)
                             ...+..+..|...+.++.| +++ ++ ++++.|+.|++||+.+++.+..+..+..+..++|+|+++.++ ++ 
T Consensus       201 -------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~  273 (433)
T 3bws_A          201 -------LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQF  273 (433)
T ss_dssp             -------CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEE
T ss_pred             -------ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEEC
Confidence                   2234455788999999999 555 55 566689999999999999999888877777799999999888 55 


Q ss_pred             -------cCCeEEEEecCCceeeeec-cCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeeccccCCceeEEE
Q 022303          170 -------IGTRICIWRRNGLRSVFPS-REGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS  240 (299)
Q Consensus       170 -------~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~  240 (299)
                             .|+.|++||+.+++..... +.. ....++++++++. +++++.++.|++||+.+++.+..+. +...+.+++
T Consensus       274 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~  351 (433)
T 3bws_A          274 SASNQESGGGRLGIYSMDKEKLIDTIGPPG-NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIA  351 (433)
T ss_dssp             ESCTTCSCCEEEEEEETTTTEEEEEEEEEE-CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEE
T ss_pred             CCCccccCCCeEEEEECCCCcEEeeccCCC-CcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEE
Confidence                   4889999999887533222 222 2234688898876 5667899999999999988887774 677799999


Q ss_pred             eCCC-CeEEEEeC---------------CCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          241 LSED-QLIISGSS---------------LGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       241 ~~~~-~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      |+|+ +++++++.               ||.|++||+.+++.+..+..+.   .+.+++|+|+|++|++++.
T Consensus       352 ~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~  420 (433)
T 3bws_A          352 LSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN---QPTGLDVSPDNRYLVISDF  420 (433)
T ss_dssp             ECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS---SEEEEEECTTSCEEEEEET
T ss_pred             EcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC---CCceEEEcCCCCEEEEEEC
Confidence            9999 88888776               5799999999999998887743   7999999999999987753

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.92  E-value=7.6e-23  Score=175.29  Aligned_cols=183  Identities=13%  Similarity=0.157  Sum_probs=151.4

Q ss_pred             eeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCce-
Q 022303          108 WKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR-  183 (299)
Q Consensus       108 ~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~-  183 (299)
                      +.+|...|++++| +++ +|++|+.||+|++||+.+++++..+..|...+. ++++++..++ ++.|+.+++||..... 
T Consensus       143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~-~~s~~~~~l~sgs~d~~i~~~d~~~~~~  221 (420)
T 4gga_A          143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG-SLSWNSYILSSGSRSGHIHHHDVRVAEH  221 (420)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEETTEEEEEETTSEEEEEETTSSSC
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceE-EEeeCCCEEEEEeCCCceeEeeecccce
Confidence            3578889999999 666 999999999999999999999999998865544 3445677888 9999999999998764 


Q ss_pred             --eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcce----eeeccccCCceeEEEeCCC--CeEEE--EeCC
Q 022303          184 --SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC----SQIIRMHCAPVTSLSLSED--QLIIS--GSSL  253 (299)
Q Consensus       184 --~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~--~~l~~--~~~d  253 (299)
                        ..+..+..... ...+.+.+..+++++.|+.+++||..+++.    +.....|...|.+++|+|+  .++++  |+.|
T Consensus       222 ~~~~~~~h~~~~~-~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D  300 (420)
T 4gga_A          222 HVATLSGHSQEVC-GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD  300 (420)
T ss_dssp             EEEEEECCSSCEE-EEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT
T ss_pred             eeEEeccccccee-eeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCC
Confidence              33445554443 468889999999999999999999987653    4455678899999999997  56665  4579


Q ss_pred             CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          254 GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       254 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ++|++||+++++++..+..+.   .+.++.|+|+++.+++++
T Consensus       301 ~~I~iwd~~t~~~~~~~~~~~---~v~~~~~~~~~~~lv~~s  339 (420)
T 4gga_A          301 RHIRIWNVCSGACLSAVDAHS---QVCSILWSPHYKELISGH  339 (420)
T ss_dssp             CEEEEEETTTTEEEEEEECSS---CEEEEEEETTTTEEEEEE
T ss_pred             CEEEEEeCCccccceeecccc---ceeeeeecCCCCeEEEEE
Confidence            999999999999999988766   799999999999998875

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.3e-24  Score=185.95  Aligned_cols=202  Identities=12%  Similarity=0.050  Sum_probs=155.9

Q ss_pred             hhhhhhhhhhccccceeecCceeeE--------EeeccccCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCC
Q 022303           82 MRLHLEELAMKHHRFALEEGRIDID--------QWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPN  152 (299)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~g~~~~~--------~~~~h~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  152 (299)
                      ...|+.++.++|+++.++++..+..        .+++|...|+++.| |++      .++.+.+|+.+.. ....+....
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~-~~~~~~~~~   86 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLE------FENKLDFELAQQN-GLLNSQPVC   86 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCC------CCCTTTTSCCCSS-CSSTTSCSC
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCC------CcceEEEEeCCCc-eEeecCCCC
Confidence            4567889999999999999887733        34799999999988 665      5566555554322 222333445


Q ss_pred             ceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCc----cceeeeeccCCCeEEEecCCCcEEEEEcCCcce--
Q 022303          153 AASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGT----FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC--  225 (299)
Q Consensus       153 ~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--  225 (299)
                      .+..++|+|+|+.|+ ++.||.|++||..+....+. +...    ....++|+|+++.|++|+.||+|++||+.++..  
T Consensus        87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~  165 (588)
T 2j04_A           87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENT  165 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTC
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccc
Confidence            566799999999999 99999999999655333333 3322    234679999999999999999999999998753  


Q ss_pred             -----eeec----cccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCce---EEEee-ccCCCCcEEEEEccCCCCeEE
Q 022303          226 -----SQII----RMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQR---VATLR-STDCTGHIICLMYPQFLHMLF  292 (299)
Q Consensus       226 -----~~~~----~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~-~~~~~~~i~~~~~s~~g~~l~  292 (299)
                           +..+    .+|...|.+++|+|+. +++++.|++|++||+..++.   .+++. +|..  .|.+++|+  |+.||
T Consensus       166 ~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~--~V~svaFs--g~~LA  240 (588)
T 2j04_A          166 PEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR--KITDLKIV--DYKVV  240 (588)
T ss_dssp             CCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS--CCCCEEEE--TTEEE
T ss_pred             ccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccC--cEEEEEEE--CCEEE
Confidence                 4565    5677899999999999 99999999999999988773   35664 5655  89999999  68898


Q ss_pred             eeec
Q 022303          293 FLCF  296 (299)
Q Consensus       293 s~s~  296 (299)
                      +++.
T Consensus       241 Sa~~  244 (588)
T 2j04_A          241 LTCP  244 (588)
T ss_dssp             EECS
T ss_pred             EEeC
Confidence            8873

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.91  E-value=2.6e-24  Score=177.03  Aligned_cols=225  Identities=12%  Similarity=0.084  Sum_probs=166.1

Q ss_pred             CCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhh
Q 022303           12 PPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAM   91 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~   91 (299)
                      .+....+..+.++++|+.+..+.+..+.+|...+.++.  +++..+++                ...+...+.|..    
T Consensus        79 ~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~--~~~~~l~s----------------~~~~~~~~~~~~----  136 (318)
T 4ggc_A           79 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS--WNSYILSS----------------GSRSGHIHHHDV----  136 (318)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE--EETTEEEE----------------EETTSEEEEEET----
T ss_pred             CCEEEEEECCCcEEEeecCCceeEEEecCccceEEEee--cCCCEEEE----------------EecCCceEeeec----
Confidence            34445666788999999999888888889988776543  44445554                113333344422    


Q ss_pred             ccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeE----EEecCC-CceeEEEEecCCC
Q 022303           92 KHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCV----EEYSLP-NAASLVDFDFDES  164 (299)
Q Consensus        92 ~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~----~~~~~~-~~~~~~~~~~~~~  164 (299)
                             ..+...+..+.+|...+..+.+ +++ +|++++.||.|++||+.+++..    .....+ ..+..+.+.+++.
T Consensus       137 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  209 (318)
T 4ggc_A          137 -------RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS  209 (318)
T ss_dssp             -------TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTST
T ss_pred             -------CCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCC
Confidence                   2233446677899999999988 555 9999999999999999876532    233333 3445588888776


Q ss_pred             EEE----EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEE--ecCCCcEEEEEcCCcceeeeccccCCceeE
Q 022303          165 KIV----GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVV--GCEDGTARVFDMYSRKCSQIIRMHCAPVTS  238 (299)
Q Consensus       165 ~l~----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~  238 (299)
                      .++    ++.++.|++||...................++.+.+..+++  |+.|+.|++||+++++.+..+.+|.+.|++
T Consensus       210 ~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~  289 (318)
T 4ggc_A          210 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLS  289 (318)
T ss_dssp             TEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             cEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence            433    45678999999988764433333333335678888888655  457999999999999999999999999999


Q ss_pred             EEeCCC-CeEEEEeCCCcEEEEeCCCCc
Q 022303          239 LSLSED-QLIISGSSLGSIAISGLSSDQ  265 (299)
Q Consensus       239 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~  265 (299)
                      ++|+|+ ++|++|+.||+|+|||+.+.+
T Consensus       290 l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          290 LTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             EEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            999999 999999999999999997653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.90  E-value=2.3e-21  Score=164.21  Aligned_cols=186  Identities=8%  Similarity=0.054  Sum_probs=150.2

Q ss_pred             eEEeeccccCeeEEEe-cCC-EE-EEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EE-cCCeEEEEec
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LI-LTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICIWRR  179 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~d~~i~v~d~  179 (299)
                      +..+..|. .+.++.| +++ ++ ++++.|+.|++||+.+++.+..+..+..+..++|+|+++.++ ++ .++.|++||+
T Consensus        25 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~  103 (391)
T 1l0q_A           25 TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDT  103 (391)
T ss_dssp             EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEEC
Confidence            34455564 5889999 666 54 777899999999999999999999888777899999999876 44 5699999999


Q ss_pred             CCceeeeeccCCccceeeeeccCCCeE-EEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeE-EEEeCCCcE
Q 022303          180 NGLRSVFPSREGTFMKGLCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI-ISGSSLGSI  256 (299)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l-~~~~~dg~i  256 (299)
                      .+++.............++++++++.+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+ +.+ ++++.++.|
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v  182 (391)
T 1l0q_A          104 TSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSI  182 (391)
T ss_dssp             TTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEE
Confidence            987643322222233457899999886 78888999999999999988887654 45799999999 666 677889999


Q ss_pred             EEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          257 AISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ++||+++++.+..+..+.   .+.+++|+|+|++|++++
T Consensus       183 ~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~  218 (391)
T 1l0q_A          183 SVIDTVTNSVIDTVKVEA---APSGIAVNPEGTKAYVTN  218 (391)
T ss_dssp             EEEETTTTEEEEEEECSS---EEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCCeEEEEEecCC---CccceEECCCCCEEEEEe
Confidence            999999998888876543   799999999999999886

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.89  E-value=3.8e-22  Score=171.27  Aligned_cols=185  Identities=11%  Similarity=0.117  Sum_probs=150.6

Q ss_pred             eeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCc-eeEEEEecCCCEEE-EE-cCCeEEEEecCCc
Q 022303          108 WKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GL-IGTRICIWRRNGL  182 (299)
Q Consensus       108 ~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~  182 (299)
                      +.+|.+.|.++.| +++ ++++++.|+.|++||+.+++.+..+..+.. +..++|+|+++.++ ++ .++.|++||++++
T Consensus       165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~  244 (433)
T 3bws_A          165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK  244 (433)
T ss_dssp             HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence            3689999999999 555 899999999999999999999988886654 44599999999886 44 6899999999887


Q ss_pred             eeeeeccCCccceeeeeccCCCeEEEec--------CCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-C-eEEEEeC
Q 022303          183 RSVFPSREGTFMKGLCMRYFDPEAVVGC--------EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGSS  252 (299)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~--------~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~  252 (299)
                      +.............+++++++..+++++        .|+.|++||+++++.+..+ .+...+.+++|+|+ + ++++++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~  323 (433)
T 3bws_A          245 LEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMC  323 (433)
T ss_dssp             EEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETT
T ss_pred             cEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecC
Confidence            6443332233344578899999988877        5889999999998877766 55667899999998 5 5567789


Q ss_pred             CCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          253 LGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       253 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      |+.|++||+.+++.+..+.. ..  .+.+++|+|+|++|++++.
T Consensus       324 ~~~v~v~d~~~~~~~~~~~~-~~--~~~~~~~s~dg~~l~~~~~  364 (433)
T 3bws_A          324 CSKIEVYDLKEKKVQKSIPV-FD--KPNTIALSPDGKYLYVSCR  364 (433)
T ss_dssp             TTEEEEEETTTTEEEEEEEC-SS--SEEEEEECTTSSEEEEEEC
T ss_pred             CCEEEEEECCCCcEEEEecC-CC--CCCeEEEcCCCCEEEEEec
Confidence            99999999999998888863 33  7999999999999888764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.89  E-value=2.2e-21  Score=162.57  Aligned_cols=240  Identities=13%  Similarity=0.089  Sum_probs=164.3

Q ss_pred             cchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeec
Q 022303           21 RATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEE  100 (299)
Q Consensus        21 ~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~  100 (299)
                      .+.+++|+.+....+....  ...+..+++.++.+.++.               ....+..+++|..  ....       
T Consensus        39 ~~~~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------------~~~~d~~v~iWd~--~~~~-------   92 (355)
T 3vu4_A           39 LKSFEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAF---------------VTGVKEVVHIWDD--VKKQ-------   92 (355)
T ss_dssp             SSEEEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEE---------------ECSSTTEEEEEET--TTTE-------
T ss_pred             CCEEEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEE---------------EECCccEEEEEEC--CCCc-------
Confidence            3456778766544332221  123555556666555532               0124567778832  2221       


Q ss_pred             CceeeEEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCc-eeEEEecCCCceeEEEEecCCCEEE-E--EcCCeEEE
Q 022303          101 GRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGY-KCVEEYSLPNAASLVDFDFDESKIV-G--LIGTRICI  176 (299)
Q Consensus       101 g~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~-~--~~d~~i~v  176 (299)
                         .+..+. |..+|.++.+..+.++.+ .|+.|++||+.++ +.+..+..  ....+++++  ..++ +  +.+|.|++
T Consensus        93 ---~~~~~~-~~~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g~v~i  163 (355)
T 3vu4_A           93 ---DVSRIK-VDAPVKDLFLSREFIVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNLGQIHI  163 (355)
T ss_dssp             ---EEEEEE-CSSCEEEEEECSSEEEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCTTCEEE
T ss_pred             ---EEEEEE-CCCceEEEEEcCCEEEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcCcEEEE
Confidence               223333 677999999966655544 3789999999988 66655554  233367777  5555 3  67899999


Q ss_pred             EecCCce------------------eeeeccCCccceeeeeccCCCeEEEecCCCc-EEEEEcCCcceeeecc-c-cCCc
Q 022303          177 WRRNGLR------------------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGT-ARVFDMYSRKCSQIIR-M-HCAP  235 (299)
Q Consensus       177 ~d~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~-~-~~~~  235 (299)
                      ||+.+..                  ..+..|.+.+. .+++++++..|++|+.|++ |++||+++++.+..+. + |...
T Consensus       164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~-~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~  242 (355)
T 3vu4_A          164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK-MVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRAD  242 (355)
T ss_dssp             EECCC------------------CCEEECCCSSCEE-EEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSC
T ss_pred             EECCCCCccccccccccccccCcccEEEEccCCceE-EEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCc
Confidence            9998743                  34556666554 5689999999999999998 9999999999999997 4 9999


Q ss_pred             eeEEEeCCC-CeEEEEeCCCcEEEEeCCCCce--EEEeec------------------cC-CCCcEEEEEccCCCCeEEe
Q 022303          236 VTSLSLSED-QLIISGSSLGSIAISGLSSDQR--VATLRS------------------TD-CTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       236 i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~--~~~~~~------------------~~-~~~~i~~~~~s~~g~~l~s  293 (299)
                      |.+++|+|+ ++|++++.|++|++||++++..  ...+..                  .. ...+...++|+++|++|++
T Consensus       243 v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~  322 (355)
T 3vu4_A          243 VVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVV  322 (355)
T ss_dssp             EEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEE
Confidence            999999999 9999999999999999976531  111100                  00 0013477899999999999


Q ss_pred             eec
Q 022303          294 LCF  296 (299)
Q Consensus       294 ~s~  296 (299)
                      ++.
T Consensus       323 ~~~  325 (355)
T 3vu4_A          323 WPH  325 (355)
T ss_dssp             ETT
T ss_pred             EeC
Confidence            864

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.87  E-value=4.9e-23  Score=174.99  Aligned_cols=217  Identities=12%  Similarity=0.075  Sum_probs=151.2

Q ss_pred             CCCCCcchhccCcHHHHHH-----HhhccCccchhhHHHhhh--------hHHHHhhhhhHHHHHHhhhcCCCCCCCchh
Q 022303           16 RSSKPRATIESLNGDIICM-----IFSSLGFFDLVRCSAVCK--------SWNAIINRCKLLQLLYCKLHGFSNTSGSSM   82 (299)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~-----i~~~~~h~~~v~~~~~~~--------~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~   82 (299)
                      +.+..+.++++|+.+....     +..+.+|.+.|++++|+|        ++++||+                ...|+++
T Consensus       105 as~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las----------------~s~D~tv  168 (393)
T 4gq1_A          105 ACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIAS----------------VGDDCTL  168 (393)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEE----------------EETTSEE
T ss_pred             EEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEE----------------EECCCeE
Confidence            4445688999999876542     234668999999999998        7788887                4478999


Q ss_pred             hhhhhhhhhccccceeecCceeeEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEec----------
Q 022303           83 RLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYS----------  149 (299)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~----------  149 (299)
                      |+|  ++..          ...+..+.+|.++|.+++| |++  +|++|+.||+|++||+.+++......          
T Consensus       169 ~~W--d~~~----------~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~  236 (393)
T 4gq1_A          169 IIW--RLTD----------EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL  236 (393)
T ss_dssp             EEE--EEET----------TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred             EEE--ECCC----------CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence            999  3221          2233445689999999999 554  79999999999999998876543321          


Q ss_pred             ---------------CC-CceeEEEEe-cCCCEEE-EEcCCeEEEEecCCcee--eeeccCCc-----------------
Q 022303          150 ---------------LP-NAASLVDFD-FDESKIV-GLIGTRICIWRRNGLRS--VFPSREGT-----------------  192 (299)
Q Consensus       150 ---------------~~-~~~~~~~~~-~~~~~l~-~~~d~~i~v~d~~~~~~--~~~~~~~~-----------------  192 (299)
                                     .+ ..+..+.|. ++++.++ ++.|+.+++||+.....  .+..+...                 
T Consensus       237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  316 (393)
T 4gq1_A          237 LTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP  316 (393)
T ss_dssp             EEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSC
T ss_pred             EecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccC
Confidence                           22 233457776 7899998 99999999999876431  11111100                 


Q ss_pred             cceeeeeccC-CC-eEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeC
Q 022303          193 FMKGLCMRYF-DP-EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGL  261 (299)
Q Consensus       193 ~~~~~~~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~  261 (299)
                      .....++.+. +. .+++|+.||.|++||+.+++.......|..+|.+++|+|+ ++||+++.+| +.+|.+
T Consensus       317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            0001122222 23 3678899999999999999988888889999999999999 9999998776 666654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.87  E-value=7.1e-21  Score=162.74  Aligned_cols=250  Identities=11%  Similarity=-0.016  Sum_probs=172.4

Q ss_pred             cchhccCcH--HHHHHHh--hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhc---CCC-----CCCC---chhhhh
Q 022303           21 RATIESLNG--DIICMIF--SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLH---GFS-----NTSG---SSMRLH   85 (299)
Q Consensus        21 ~~~~~~~~~--~~~~~i~--~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~---~~~-----~~~d---~~~~~~   85 (299)
                      ...+++|+.  ...+++.  .+.+|...++.+++.+.......       ......   ..+     ...+   ..+++|
T Consensus        92 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~  164 (415)
T 2hqs_A           92 NVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEK-------LTGIKGAFRTRIAYVVQTNGGQFPYELRVS  164 (415)
T ss_dssp             EEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHH-------HHSSCCCTTCEEEEEEECSSSSCCEEEEEE
T ss_pred             EEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHH-------HcCCCCcCCCEEEEEEecCCCCccceEEEE
Confidence            347899999  7777663  47789999998887664332221       000000   000     0011   333333


Q ss_pred             hhhhhhccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCC---cEEEEecCCceeEEEecCCCceeEEEEe
Q 022303           86 LEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDK---VMRLWSLEGYKCVEEYSLPNAASLVDFD  160 (299)
Q Consensus        86 ~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~  160 (299)
                        ++           .....+.+.+|...|.++.| |++ +|++++.++   .|++||+.+++..........+..++|+
T Consensus       165 --d~-----------~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~s  231 (415)
T 2hqs_A          165 --DY-----------DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFS  231 (415)
T ss_dssp             --ET-----------TSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEEC
T ss_pred             --cC-----------CCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEc
Confidence              21           12234566789999999999 676 899999885   9999999999876544444455569999


Q ss_pred             cCCCEEE-E-EcCC--eEEEEecCCcee-eeeccCCccceeeeeccCCCeEEEecC-CC--cEEEEEcCCcceeeecccc
Q 022303          161 FDESKIV-G-LIGT--RICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPEAVVGCE-DG--TARVFDMYSRKCSQIIRMH  232 (299)
Q Consensus       161 ~~~~~l~-~-~~d~--~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~  232 (299)
                      |+++.|+ . +.++  .|++||+.+++. .+..+... ....+|+|++..|++++. ++  .|.+||+.+++. ..+..+
T Consensus       232 pdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~-~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~  309 (415)
T 2hqs_A          232 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSN-NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWE  309 (415)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSC-EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCS
T ss_pred             CCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCc-ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecC
Confidence            9999887 3 4444  599999987653 33333333 335689999998887765 44  677889987764 344456


Q ss_pred             CCceeEEEeCCC-CeEEEEeCC---CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          233 CAPVTSLSLSED-QLIISGSSL---GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       233 ~~~i~~~~~~~~-~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ...+.+++|+|+ ++|++++.+   ..|++||+.+++. ..+..+.   .+.+++|+|+|++|++++.
T Consensus       310 ~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~---~~~~~~~spdg~~l~~~s~  373 (415)
T 2hqs_A          310 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF---LDETPSLAPNGTMVIYSSS  373 (415)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS---SCEEEEECTTSSEEEEEEE
T ss_pred             CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC---CcCCeEEcCCCCEEEEEEc
Confidence            678999999999 888887764   5899999998876 3454443   6899999999999988764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.84  E-value=2.6e-20  Score=159.23  Aligned_cols=234  Identities=11%  Similarity=0.027  Sum_probs=168.2

Q ss_pred             chhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecC
Q 022303           22 ATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEG  101 (299)
Q Consensus        22 ~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g  101 (299)
                      ..+.+|+.+. ..+..+.+|.+.+.+++|+|+++.|+...         .    ...+..+++|  ++...         
T Consensus       159 ~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s---------~----~~~~~~i~~~--d~~tg---------  213 (415)
T 2hqs_A          159 YELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVT---------F----ESGRSALVIQ--TLANG---------  213 (415)
T ss_dssp             EEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEE---------C----TTSSCEEEEE--ETTTC---------
T ss_pred             ceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEE---------e----cCCCcEEEEE--ECCCC---------
Confidence            6888999873 44566678999999999999999988610         0    0011244444  33222         


Q ss_pred             ceeeEEeeccccCeeEEEe-cCC-EEE-EEeCCCc--EEEEecCCceeEEEecCCC-ceeEEEEecCCCEEE-EEc-CC-
Q 022303          102 RIDIDQWKAHSVGVDQCRM-KRG-LIL-TGVGDKV--MRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV-GLI-GT-  172 (299)
Q Consensus       102 ~~~~~~~~~h~~~i~~~~~-~~~-~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~-d~-  172 (299)
                        ....+..|...+.++.| |++ +|+ +++.|+.  |++||+.+++.. .+..+. .+..++|+|+++.|+ ++. ++ 
T Consensus       214 --~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~l~~~s~~~g~  290 (415)
T 2hqs_A          214 --AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGR  290 (415)
T ss_dssp             --CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             --cEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCcCCCCcccceEECCCCCEEEEEECCCCC
Confidence              12244678889999999 666 566 7776665  999999988764 444444 455599999999888 554 34 


Q ss_pred             -eEEEEecCCceee-eeccCCccceeeeeccCCCeEEEecCC---CcEEEEEcCCcceeeeccccCCceeEEEeCCC-Ce
Q 022303          173 -RICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCED---GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QL  246 (299)
Q Consensus       173 -~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~  246 (299)
                       .|++||+.++... +..+. ......+|+|++.+|++++.+   ..|.+||+.+++.. .+..+. .+.+++|+|+ ++
T Consensus       291 ~~i~~~d~~~~~~~~l~~~~-~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~  367 (415)
T 2hqs_A          291 PQVYKVNINGGAPQRITWEG-SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTM  367 (415)
T ss_dssp             CEEEEEETTSSCCEECCCSS-SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSE
T ss_pred             cEEEEEECCCCCEEEEecCC-CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCE
Confidence             7888898876532 22222 233356899999998877654   58999999988764 444444 7999999999 88


Q ss_pred             EEEEeCCC---cEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCC
Q 022303          247 IISGSSLG---SIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLH  289 (299)
Q Consensus       247 l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  289 (299)
                      |++++.++   .|++||+. ++....+..+.+  .|.+++|+|...
T Consensus       368 l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~--~v~~~~~~~~~~  410 (415)
T 2hqs_A          368 VIYSSSQGMGSVLNLVSTD-GRFKARLPATDG--QVKFPAWSPYLH  410 (415)
T ss_dssp             EEEEEEETTEEEEEEEETT-SCCEEECCCSSS--EEEEEEECCCCC
T ss_pred             EEEEEcCCCccEEEEEECC-CCcEEEeeCCCC--CCcCCccccccc
Confidence            88888777   79999986 666788888877  899999999754

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.82  E-value=5.2e-19  Score=151.87  Aligned_cols=181  Identities=11%  Similarity=0.123  Sum_probs=132.4

Q ss_pred             ccCeeEEEe-cC-CEEEEEeCCCcEEEEecCCc-----------e-----eEEEecCCCceeEEEEecCCCEEE-----E
Q 022303          112 SVGVDQCRM-KR-GLILTGVGDKVMRLWSLEGY-----------K-----CVEEYSLPNAASLVDFDFDESKIV-----G  168 (299)
Q Consensus       112 ~~~i~~~~~-~~-~~l~s~~~dg~i~iwd~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~l~-----~  168 (299)
                      ...++.+++ ++ +++++++.|+ +++|+....           .     ....+.....+..++|+|++++|+     +
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            345777877 33 3899999888 888875321           1     111223334466699999999988     2


Q ss_pred             EcCCeEEEEecCCc--------e-----eeeeccCCccceeeeeccC-CCeEEEecCCCcEEEEEcCCcceeeeccccCC
Q 022303          169 LIGTRICIWRRNGL--------R-----SVFPSREGTFMKGLCMRYF-DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA  234 (299)
Q Consensus       169 ~~d~~i~v~d~~~~--------~-----~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  234 (299)
                      +.|+.|++||+.+.        +     ..+..|...+. .++|+|. +..+++++.||.|++||++++..+.....|..
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~  193 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVI-DMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV  193 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEE-EEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceE-EEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence            34889999998654        1     12222333333 4688887 56799999999999999998877666667888


Q ss_pred             ceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCC-----CCcEEEEEccCCCCeEEeee
Q 022303          235 PVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDC-----TGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       235 ~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~i~~~~~s~~g~~l~s~s  295 (299)
                      .|.+++|+|+ ++|++|+.||.|++||++ ++....+..+..     ...|.+++|++++.++++.+
T Consensus       194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~  259 (434)
T 2oit_A          194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYA  259 (434)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred             ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence            9999999999 999999999999999998 666666654422     11789999999988886543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.81  E-value=2.7e-20  Score=150.92  Aligned_cols=246  Identities=10%  Similarity=-0.014  Sum_probs=170.7

Q ss_pred             CCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhh-ccccc
Q 022303           18 SKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAM-KHHRF   96 (299)
Q Consensus        18 ~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~   96 (299)
                      .+.+..+.+|+.+.... ..+..|.+.+.+++|+|++++++..                 .+..+.+|  ++.. ..   
T Consensus        18 ~~~~~~i~~~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~-----------------~~~~i~~~--d~~~~~~---   74 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKM-RVVWQTPELFEAPNWSPDGKYLLLN-----------------SEGLLYRL--SLAGDPS---   74 (297)
T ss_dssp             CCCCEEEEEEETTTTEE-EEEEEESSCCEEEEECTTSSEEEEE-----------------ETTEEEEE--ESSSCCS---
T ss_pred             CCcceeEEEEeCCCCce-eeeccCCcceEeeEECCCCCEEEEE-----------------cCCeEEEE--eCCCCCC---
Confidence            45678899999877553 3566788999999999999988861                 12333344  3222 11   


Q ss_pred             eeecCceeeEEeecc-ccCeeEEEe-cCC-EEEEEe--CCCcEEEEec--CCceeEEEecCCCceeEEEEecCCCEEE--
Q 022303           97 ALEEGRIDIDQWKAH-SVGVDQCRM-KRG-LILTGV--GDKVMRLWSL--EGYKCVEEYSLPNAASLVDFDFDESKIV--  167 (299)
Q Consensus        97 ~l~~g~~~~~~~~~h-~~~i~~~~~-~~~-~l~s~~--~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~--  167 (299)
                             ......+| ...|.++.| +++ +|++++  .++...||.+  .+++ ...+..+.....++|+|+++.++  
T Consensus        75 -------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~  146 (297)
T 2ojh_A           75 -------PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYC  146 (297)
T ss_dssp             -------CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEE
T ss_pred             -------ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEE
Confidence                   12222444 467888888 666 888888  3345555554  4544 44455555566699999999876  


Q ss_pred             EEcCCeEEEEecC--Cce-eeeeccCCccceeeeeccCCCeEEEec-CCCcEEEEEcC-CcceeeeccccCCceeEEEeC
Q 022303          168 GLIGTRICIWRRN--GLR-SVFPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMY-SRKCSQIIRMHCAPVTSLSLS  242 (299)
Q Consensus       168 ~~~d~~i~v~d~~--~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~  242 (299)
                      +..++.+.+|++.  +.. ..+..+.... ..++|++++..++.++ .++.+.+|++. .+.....+..+...+..++|+
T Consensus       147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s  225 (297)
T 2ojh_A          147 GIRDQVFDIYSMDIDSGVETRLTHGEGRN-DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPS  225 (297)
T ss_dssp             EEETTEEEEEEEETTTCCEEECCCSSSCE-EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEEC
T ss_pred             ECCCCceEEEEEECCCCcceEcccCCCcc-ccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEEC
Confidence            6678988898864  332 2223333332 3568999999876555 58899999986 455666777777889999999


Q ss_pred             CC-CeEEEEeCC-----------CcEEEEeCCCCce--EEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          243 ED-QLIISGSSL-----------GSIAISGLSSDQR--VATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       243 ~~-~~l~~~~~d-----------g~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      |+ ++|++++.+           +.|.+||+.+++.  +..+..+..  .+.+++|+|+|++|++++..
T Consensus       226 ~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          226 PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG--TMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT--TSCSCCBCTTSSEEEEEEEC
T ss_pred             CCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc--ccccceECCCCCEEEEEEec
Confidence            99 888888765           5699999988765  344445665  79999999999999988753

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.79  E-value=6e-17  Score=131.11  Aligned_cols=187  Identities=10%  Similarity=-0.031  Sum_probs=137.0

Q ss_pred             EEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCC-ceeEEEecCC--CceeEEEEecCCCEEE-EE--cC--CeEE
Q 022303          106 DQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG-YKCVEEYSLP--NAASLVDFDFDESKIV-GL--IG--TRIC  175 (299)
Q Consensus       106 ~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~--~~~~~~~~~~~~~~l~-~~--~d--~~i~  175 (299)
                      ..+..|...|.++.| +++ +|++++ ++.|.+||+.+ ++.......+  ..+..++|+|+++.++ ++  .+  ..|.
T Consensus        35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~  113 (297)
T 2ojh_A           35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIY  113 (297)
T ss_dssp             EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEE
T ss_pred             eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEE
Confidence            344678899999999 666 777776 88999999999 8877666555  3344599999999998 66  22  3555


Q ss_pred             EEecCCceeeeeccCCccceeeeeccCCCeEE-EecCCCcEEEEEcCC-cceeeeccccCCceeEEEeCCC-CeEEEEe-
Q 022303          176 IWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYS-RKCSQIIRMHCAPVTSLSLSED-QLIISGS-  251 (299)
Q Consensus       176 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-  251 (299)
                      .++..+........... ...++|++++..++ ++..++.+.+|+++. ......+..+...+.+++|+|+ ++++.++ 
T Consensus       114 ~~~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  192 (297)
T 2ojh_A          114 LLPSTGGTPRLMTKNLP-SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS  192 (297)
T ss_dssp             EEETTCCCCEECCSSSS-EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC
T ss_pred             EEECCCCceEEeecCCC-ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec
Confidence            55655544222112222 33468999999866 778899999998642 2334455567788999999999 7776665 


Q ss_pred             CCCcEEEEeCC-CCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          252 SLGSIAISGLS-SDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       252 ~dg~i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      .++.+++|++. .+..+..+..+..  .+.+++|+|+|++|++++.
T Consensus       193 ~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~  236 (297)
T 2ojh_A          193 RTGQMQIWRVRVDGSSVERITDSAY--GDWFPHPSPSGDKVVFVSY  236 (297)
T ss_dssp             TTSSCEEEEEETTSSCEEECCCCSE--EEEEEEECTTSSEEEEEEE
T ss_pred             CCCCccEEEECCCCCCcEEEecCCc--ccCCeEECCCCCEEEEEEc
Confidence            58999999986 5666777776665  8999999999999988764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.78  E-value=1.4e-18  Score=153.16  Aligned_cols=244  Identities=11%  Similarity=0.087  Sum_probs=172.5

Q ss_pred             cchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeec
Q 022303           21 RATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEE  100 (299)
Q Consensus        21 ~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~  100 (299)
                      +.++..|+.+++..+..+..+.. +.+++|+|+++++++                ...+.++++|  ++..        .
T Consensus       158 d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v----------------~~~d~~V~v~--D~~~--------~  210 (543)
T 1nir_A          158 AGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLV----------------IGRDARIDMI--DLWA--------K  210 (543)
T ss_dssp             GTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEE----------------EETTSEEEEE--ETTS--------S
T ss_pred             CCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEE----------------ECCCCeEEEE--ECcC--------C
Confidence            56788898887766655552222 778899999998876                1134556666  3210        0


Q ss_pred             CceeeEEeeccccCeeEEEe-c----CC-EEEEEe-CCCcEEEEecCCceeEEEecCC-----------C-ceeEEEEec
Q 022303          101 GRIDIDQWKAHSVGVDQCRM-K----RG-LILTGV-GDKVMRLWSLEGYKCVEEYSLP-----------N-AASLVDFDF  161 (299)
Q Consensus       101 g~~~~~~~~~h~~~i~~~~~-~----~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-----------~-~~~~~~~~~  161 (299)
                      ....+.++.. ...+..+.| +    ++ ++++++ .+++|.+||..+++++..+..+           . .+..+.+++
T Consensus       211 t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~  289 (543)
T 1nir_A          211 EPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH  289 (543)
T ss_dssp             SCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred             CCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC
Confidence            1112334443 345678888 5    67 777777 5899999999999999888642           2 344589999


Q ss_pred             CCCEEE--EEcCCeEEEEecCCceeee--eccCCccceeeeeccCCCeEE-EecCCCcEEEEEcCCcceeeeccc----c
Q 022303          162 DESKIV--GLIGTRICIWRRNGLRSVF--PSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCSQIIRM----H  232 (299)
Q Consensus       162 ~~~~l~--~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~----~  232 (299)
                      ++..++  ...++.|.+||..+.....  ....+.....++|++++.+++ ++..+++|.+||..+++++..+..    |
T Consensus       290 ~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph  369 (543)
T 1nir_A          290 EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH  369 (543)
T ss_dssp             SSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBC
T ss_pred             CCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCC
Confidence            887755  5668899999998753211  111122233468999999865 455689999999999998887763    4


Q ss_pred             CCceeEEEeCCC--CeEEEEe-CCCcEEEEeCCC-------CceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          233 CAPVTSLSLSED--QLIISGS-SLGSIAISGLSS-------DQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       233 ~~~i~~~~~~~~--~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      .+....+ ++|+  .+++++. .|++|.+||+.+       .++++++..+..  .+..++|+|+|++|++++
T Consensus       370 ~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~--~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          370 PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCCEEEECC
T ss_pred             CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC--CceEEEcCCCCCcEEEec
Confidence            4333333 4565  5667765 689999999988       899999998876  788999999999999986

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.76  E-value=7.8e-17  Score=142.06  Aligned_cols=173  Identities=11%  Similarity=0.033  Sum_probs=137.4

Q ss_pred             cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEec--CCceeeeeccCCcccee
Q 022303          121 KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRR--NGLRSVFPSREGTFMKG  196 (299)
Q Consensus       121 ~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~--~~~~~~~~~~~~~~~~~  196 (299)
                      +++ ++++++.|++|.+||..+++++.++..+..+..++|+|++++++ ++.|+.|.+||+  .+.+.......+.....
T Consensus       147 p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~  226 (543)
T 1nir_A          147 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS  226 (543)
T ss_dssp             GGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred             CCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcce
Confidence            455 88889999999999999999999998554566699999999998 899999999999  66654333333333445


Q ss_pred             eeecc----CCCeEEEecC-CCcEEEEEcCCcceeeeccc----------cC-CceeEEEeCCC--CeEEEEeCCCcEEE
Q 022303          197 LCMRY----FDPEAVVGCE-DGTARVFDMYSRKCSQIIRM----------HC-APVTSLSLSED--QLIISGSSLGSIAI  258 (299)
Q Consensus       197 ~~~~~----~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~----------~~-~~i~~~~~~~~--~~l~~~~~dg~i~i  258 (299)
                      +++++    +++++++++. ++.|.+||..+++++..+..          |. ..+..+.++|+  .++++...++.|.+
T Consensus       227 va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~v  306 (543)
T 1nir_A          227 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL  306 (543)
T ss_dssp             EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             EEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEE
Confidence            78999    9999888874 89999999999998887753          22 26889999986  57788888999999


Q ss_pred             EeCCCCceEE--EeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          259 SGLSSDQRVA--TLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       259 wd~~~~~~~~--~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ||+.+.+.+.  ++. +..  .+.+++|+|+|++|++++.
T Consensus       307 vd~~~~~~l~~~~i~-~~~--~~~~~~~spdg~~l~va~~  343 (543)
T 1nir_A          307 VNYKDIDNLTVTSIG-AAP--FLHDGGWDSSHRYFMTAAN  343 (543)
T ss_dssp             EECTTSSSCEEEEEE-CCS--SCCCEEECTTSCEEEEEEG
T ss_pred             EEecCCCcceeEEec-cCc--CccCceECCCCCEEEEEec
Confidence            9998876544  443 333  7889999999998887654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.75  E-value=8.2e-16  Score=127.05  Aligned_cols=186  Identities=9%  Similarity=-0.008  Sum_probs=134.5

Q ss_pred             EEeeccccCeeEEEe-cCC-EEEEEeC-CCcEEEEecCCcee-EEEecCCCceeE-EEEecCCCEEEEEcCC----eEEE
Q 022303          106 DQWKAHSVGVDQCRM-KRG-LILTGVG-DKVMRLWSLEGYKC-VEEYSLPNAASL-VDFDFDESKIVGLIGT----RICI  176 (299)
Q Consensus       106 ~~~~~h~~~i~~~~~-~~~-~l~s~~~-dg~i~iwd~~~~~~-~~~~~~~~~~~~-~~~~~~~~~l~~~~d~----~i~v  176 (299)
                      ..+..+...+ .+.+ +++ ++++++. ++.|.+||..+++. ...+..+..... ++|+|++++++++.++    .|.+
T Consensus        34 ~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v  112 (331)
T 3u4y_A           34 NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQS  112 (331)
T ss_dssp             EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEE
T ss_pred             eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEE
Confidence            3334555556 8888 666 5555554 89999999999987 777777777777 9999999998844433    8999


Q ss_pred             EecCCceeeeeccCCccceeeeeccCCCeEEE-ecCCCc-EEEEEcCCcceee----eccccCCceeEEEeCCC-CeE-E
Q 022303          177 WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVV-GCEDGT-ARVFDMYSRKCSQ----IIRMHCAPVTSLSLSED-QLI-I  248 (299)
Q Consensus       177 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~-i~iwd~~~~~~~~----~~~~~~~~i~~~~~~~~-~~l-~  248 (299)
                      ||+.+.+.......+.....++++|++.++++ ...++. +.+|++.....+.    ........+..++|+|+ +++ +
T Consensus       113 ~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v  192 (331)
T 3u4y_A          113 YSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV  192 (331)
T ss_dssp             EETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEE
T ss_pred             EECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEE
Confidence            99988764333222333346789999987554 455688 9999987533321    11133455899999999 754 5


Q ss_pred             EEeCCCcEEEEeCCCCce---EEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          249 SGSSLGSIAISGLSSDQR---VATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       249 ~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ++..++.|.+||+.+++.   +..+....   .+..++|+|+|++|++++
T Consensus       193 ~~~~~~~v~v~d~~~~~~~~~~~~~~~~~---~~~~~~~spdg~~l~v~~  239 (331)
T 3u4y_A          193 ANLIGNSIGILETQNPENITLLNAVGTNN---LPGTIVVSRDGSTVYVLT  239 (331)
T ss_dssp             EETTTTEEEEEECSSTTSCEEEEEEECSS---CCCCEEECTTSSEEEEEC
T ss_pred             EeCCCCeEEEEECCCCcccceeeeccCCC---CCceEEECCCCCEEEEEE
Confidence            555789999999999988   77776553   678999999999877654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.74  E-value=1.6e-16  Score=136.44  Aligned_cols=153  Identities=9%  Similarity=0.096  Sum_probs=113.0

Q ss_pred             ccccCeeEEEe-cCC-EEE----EEeCCCcEEEEecCCc--------ee---EEEecCCCc-eeEEEEecC-CCEEE-EE
Q 022303          110 AHSVGVDQCRM-KRG-LIL----TGVGDKVMRLWSLEGY--------KC---VEEYSLPNA-ASLVDFDFD-ESKIV-GL  169 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~-~l~----s~~~dg~i~iwd~~~~--------~~---~~~~~~~~~-~~~~~~~~~-~~~l~-~~  169 (299)
                      .|...|.+++| +++ +|+    +|+.|+.|++||+.++        +.   +..+..|.. +..++|+|+ +.+++ ++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            46778999999 566 777    8899999999998765        22   344445554 455999998 77888 99


Q ss_pred             cCCeEEEEecCCceeee--eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc-------CCceeEEE
Q 022303          170 IGTRICIWRRNGLRSVF--PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH-------CAPVTSLS  240 (299)
Q Consensus       170 ~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------~~~i~~~~  240 (299)
                      .||+|++||+++.....  ..+...+ ..++|++++.+|++|+.||.|++||++ ++....+..+       ...|.+++
T Consensus       170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v-~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~  247 (434)
T 2oit_A          170 ADGSIAVLQVTETVKVCATLPSTVAV-TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVL  247 (434)
T ss_dssp             TTSCEEEEEESSSEEEEEEECGGGCE-EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEE
T ss_pred             CCCeEEEEEcCCCcceeeccCCCCce-eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEE
Confidence            99999999999875432  2233333 356999999999999999999999998 5555444322       23799999


Q ss_pred             eCCC-CeEEE-EeCCCc------EEEEeCCCC
Q 022303          241 LSED-QLIIS-GSSLGS------IAISGLSSD  264 (299)
Q Consensus       241 ~~~~-~~l~~-~~~dg~------i~iwd~~~~  264 (299)
                      |+++ .++++ ++.||.      +++|++++.
T Consensus       248 w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          248 WIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            9988 54433 334433      899999864

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.73  E-value=2e-15  Score=124.69  Aligned_cols=176  Identities=7%  Similarity=-0.071  Sum_probs=131.1

Q ss_pred             CeeEEEe-cCC-E-EEEEeCCCcEEEEecCCceeEEEecCCC------ceeEEEEecCCCEEE-EE------------cC
Q 022303          114 GVDQCRM-KRG-L-ILTGVGDKVMRLWSLEGYKCVEEYSLPN------AASLVDFDFDESKIV-GL------------IG  171 (299)
Q Consensus       114 ~i~~~~~-~~~-~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~-~~------------~d  171 (299)
                      .+..+.+ +++ + ++++..++.|.+||+.+++.+..+....      .+..++|+|+++.++ +.            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            4677888 666 4 4566678999999999999888777543      445699999999888 54            57


Q ss_pred             CeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc-------------------
Q 022303          172 TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH-------------------  232 (299)
Q Consensus       172 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------------  232 (299)
                      +.|.+||+.+.+.......+.....+++++++..++++  ++.|.+||+.+++.+..+..+                   
T Consensus       115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  192 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH  192 (337)
T ss_dssp             CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCC
T ss_pred             ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeec
Confidence            99999999887543222222223346799999988777  688999999887665433211                   


Q ss_pred             -----------------------------------------------CCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC
Q 022303          233 -----------------------------------------------CAPVTSLSLSED-QLIISGSSLGSIAISGLSSD  264 (299)
Q Consensus       233 -----------------------------------------------~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~  264 (299)
                                                                     ...+.+++|+|+ ++++++  ++.|.+||+.++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~  270 (337)
T 1pby_B          193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN  270 (337)
T ss_dssp             TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT
T ss_pred             cCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC
Confidence                                                           123446899999 788777  799999999999


Q ss_pred             ceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          265 QRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       265 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +.+..+....   .+.+++|+|+|++|++++.
T Consensus       271 ~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~  299 (337)
T 1pby_B          271 ASIKRVPLPH---SYYSVNVSTDGSTVWLGGA  299 (337)
T ss_dssp             EEEEEEECSS---CCCEEEECTTSCEEEEESB
T ss_pred             cCcceecCCC---ceeeEEECCCCCEEEEEcC
Confidence            9888887554   6789999999999888753

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.73  E-value=8.1e-18  Score=153.22  Aligned_cols=185  Identities=9%  Similarity=0.032  Sum_probs=134.5

Q ss_pred             eeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCC-----ceeEEEecCCCc---------------eeEEEEecCCCE
Q 022303          108 WKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG-----YKCVEEYSLPNA---------------ASLVDFDFDESK  165 (299)
Q Consensus       108 ~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~---------------~~~~~~~~~~~~  165 (299)
                      +..+...+..+.| |++ +|++ ..|+.|++||+.+     ++.......+..               +..+.|+||++.
T Consensus       116 l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~  194 (706)
T 2z3z_A          116 LFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSC  194 (706)
T ss_dssp             EECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSE
T ss_pred             ccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCE
Confidence            3456777888888 677 7777 4789999999998     877665444333               245999999999


Q ss_pred             EE-EE---------------------------------cCCeEEEEecCCceeeeecc---CCccceeeeeccCCCeEEE
Q 022303          166 IV-GL---------------------------------IGTRICIWRRNGLRSVFPSR---EGTFMKGLCMRYFDPEAVV  208 (299)
Q Consensus       166 l~-~~---------------------------------~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~s  208 (299)
                      |+ ++                                 .+..|++||+.++.......   .......++|++++..+++
T Consensus       195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  274 (706)
T 2z3z_A          195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYV  274 (706)
T ss_dssp             EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEE
T ss_pred             EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEE
Confidence            98 65                                 34689999998876322111   1122335689999999888


Q ss_pred             ecCCC-----cEEEEEcCCcceeeecc--ccC---CceeEEEeCC--C-CeEEEEeCCCcEEEEeCC-CCceEEEeeccC
Q 022303          209 GCEDG-----TARVFDMYSRKCSQIIR--MHC---APVTSLSLSE--D-QLIISGSSLGSIAISGLS-SDQRVATLRSTD  274 (299)
Q Consensus       209 ~~~d~-----~i~iwd~~~~~~~~~~~--~~~---~~i~~~~~~~--~-~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~  274 (299)
                      ++.++     .|.+||+.+++....+.  .+.   ..+..++|+|  + +++++++.|+.+++|++. +++.+..+..+.
T Consensus       275 ~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~  354 (706)
T 2z3z_A          275 AEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGE  354 (706)
T ss_dssp             EEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSS
T ss_pred             EEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCC
Confidence            77665     89999999884333332  122   2346789999  8 889999999999999886 677777887666


Q ss_pred             CCCcEEE-EEccCCCCeEEeee
Q 022303          275 CTGHIIC-LMYPQFLHMLFFLC  295 (299)
Q Consensus       275 ~~~~i~~-~~~s~~g~~l~s~s  295 (299)
                      .  .+.. ++|+|+|+.|+.++
T Consensus       355 ~--~v~~~~~~spdg~~l~~~~  374 (706)
T 2z3z_A          355 W--EVTNFAGFDPKGTRLYFES  374 (706)
T ss_dssp             S--CEEEEEEECTTSSEEEEEE
T ss_pred             e--EEEeeeEEcCCCCEEEEEe
Confidence            5  6776 79999999887654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.73  E-value=5e-15  Score=123.22  Aligned_cols=177  Identities=8%  Similarity=0.025  Sum_probs=134.5

Q ss_pred             eeEEEe-cCC-EEEEEe--CCCcEEEEecCCceeEEEecCC-CceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeec
Q 022303          115 VDQCRM-KRG-LILTGV--GDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS  188 (299)
Q Consensus       115 i~~~~~-~~~-~l~s~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~  188 (299)
                      +.++.+ +++ ++++++  .++.|.+||..+++.+..+..+ .....++|+|+++.++ +..++.+.+||..+.+.....
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~  222 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK  222 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE
Confidence            567788 555 555554  5889999999999999888843 3455699999999888 888999999999987643221


Q ss_pred             cC-----CccceeeeeccCCCeEEEec-CCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeE-EEEeCCCcEEEEe
Q 022303          189 RE-----GTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI-ISGSSLGSIAISG  260 (299)
Q Consensus       189 ~~-----~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l-~~~~~dg~i~iwd  260 (299)
                      ..     ......+++++++..+++++ .++.|.+||..+++.+..+....  ...++|+|+ +++ ++...++.|.+||
T Consensus       223 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          223 KLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             ECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEE
Confidence            11     11222468999998866554 55999999999998887775433  357899998 754 4555799999999


Q ss_pred             CCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          261 LSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +.+++.+..+....   .+.+++|+|+|++|+++..
T Consensus       301 ~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~v~~~  333 (353)
T 3vgz_A          301 AKSYKVVKTFDTPT---HPNSLALSADGKTLYVSVK  333 (353)
T ss_dssp             TTTTEEEEEEECCS---EEEEEEECTTSCEEEEEEE
T ss_pred             CCCCeEEEEEecCC---CCCeEEEcCCCCEEEEEEc
Confidence            99999888887654   6899999999998777654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.72  E-value=1.4e-15  Score=126.51  Aligned_cols=184  Identities=7%  Similarity=0.002  Sum_probs=142.3

Q ss_pred             cccCeeEEEe-cCC-EEEEEeC-------CCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCCeEEEEec
Q 022303          111 HSVGVDQCRM-KRG-LILTGVG-------DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRR  179 (299)
Q Consensus       111 h~~~i~~~~~-~~~-~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~  179 (299)
                      ....+..+.+ +++ ++++++.       ++.|.+||..+++.+..+........++++|+++.++  ...++.|.+||.
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            3446777888 555 6666664       5689999999999998888766666799999999665  444789999999


Q ss_pred             CCceee--eeccCCc--------cceeeeeccCCCeEEEec--CCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-Ce
Q 022303          180 NGLRSV--FPSREGT--------FMKGLCMRYFDPEAVVGC--EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QL  246 (299)
Q Consensus       180 ~~~~~~--~~~~~~~--------~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~  246 (299)
                      .+++..  +......        ....+++++++..+++++  .++.|.+||..+++.+..+..+...+..++|+|+ ++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~  198 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR  198 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence            887532  2222111        123468899998866654  5788999999999988888645666889999999 88


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEeec----cCCCCcEEEEEccCCCCeEEeeec
Q 022303          247 IISGSSLGSIAISGLSSDQRVATLRS----TDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       247 l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +++++.++.|.+||+.+++.+..+..    +..  .+.+++|+|+|++|++++.
T Consensus       199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~  250 (353)
T 3vgz_A          199 LYTTNADGELITIDTADNKILSRKKLLDDGKEH--FFINISLDTARQRAFITDS  250 (353)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCCSSSCC--CEEEEEEETTTTEEEEEES
T ss_pred             EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCc--ccceEEECCCCCEEEEEeC
Confidence            99999999999999999998888765    233  6889999999998877653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.72  E-value=2.4e-15  Score=124.52  Aligned_cols=247  Identities=10%  Similarity=0.038  Sum_probs=159.8

Q ss_pred             cchhccCcHHHHH--HHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcccccee
Q 022303           21 RATIESLNGDIIC--MIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFAL   98 (299)
Q Consensus        21 ~~~~~~~~~~~~~--~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l   98 (299)
                      +..+..|+.+...  .......|...+.+++|+|++++++..               ...+..+++|..  ..       
T Consensus        14 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~---------------~~~~~~v~~~~~--~~-------   69 (343)
T 1ri6_A           14 SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVG---------------VRPEFRVLAYRI--AP-------   69 (343)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEE---------------ETTTTEEEEEEE--CT-------
T ss_pred             CCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEe---------------ecCCCeEEEEEe--cC-------
Confidence            4566777653211  122334577778889999999877640               112244555522  10       


Q ss_pred             ecCce-eeEEeeccccCeeEEEe-cCC-EEEEEe-CCCcEEEEec---CCceeEEEecCCCceeEEEEecCCCEEE-EE-
Q 022303           99 EEGRI-DIDQWKAHSVGVDQCRM-KRG-LILTGV-GDKVMRLWSL---EGYKCVEEYSLPNAASLVDFDFDESKIV-GL-  169 (299)
Q Consensus        99 ~~g~~-~~~~~~~h~~~i~~~~~-~~~-~l~s~~-~dg~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-  169 (299)
                      ..+.. .+..+..+. .+..+.| +++ +|++++ .++.|.+||+   .+.+.+..+..+..+..++|+|+++.++ ++ 
T Consensus        70 ~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  148 (343)
T 1ri6_A           70 DDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL  148 (343)
T ss_dssp             TTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG
T ss_pred             CCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecC
Confidence            01111 123334433 7788888 666 665555 5889999999   4556666777666666799999999877 55 


Q ss_pred             cCCeEEEEecCC-cee------eeeccCCccceeeeeccCCCeEE-EecCCCcEEEEEcCC--cce--eeecc---cc--
Q 022303          170 IGTRICIWRRNG-LRS------VFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYS--RKC--SQIIR---MH--  232 (299)
Q Consensus       170 ~d~~i~v~d~~~-~~~------~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~--~~~--~~~~~---~~--  232 (299)
                      .++.|.+||+.+ +..      ......+.....+++++++.+++ ++..++.|.+||+..  ++.  ...+.   ..  
T Consensus       149 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~  228 (343)
T 1ri6_A          149 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFS  228 (343)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCC
T ss_pred             CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccc
Confidence            789999999987 432      22223333333568999998765 455889999999953  332  22221   11  


Q ss_pred             -CCceeEEEeCCC-CeEE-EEeCCCcEEEEeCC--C--CceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          233 -CAPVTSLSLSED-QLII-SGSSLGSIAISGLS--S--DQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       233 -~~~i~~~~~~~~-~~l~-~~~~dg~i~iwd~~--~--~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                       ...+..++|+|+ ++|+ ++..++.|.+||+.  +  .+.+..+..+.   .+.+++|+|+|++|++++
T Consensus       229 ~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~  295 (343)
T 1ri6_A          229 DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIAAG  295 (343)
T ss_dssp             SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEEEC
T ss_pred             ccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEEec
Confidence             235678999999 6666 55579999999998  2  34444454433   588999999999888876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.72  E-value=5e-17  Score=148.36  Aligned_cols=219  Identities=6%  Similarity=0.011  Sum_probs=150.2

Q ss_pred             hhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeecccc---CeeEEEe-
Q 022303           45 VRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSV---GVDQCRM-  120 (299)
Q Consensus        45 v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~---~i~~~~~-  120 (299)
                      ..+++|+|+++++++                 ..|+.+++|  ++......          ..+.+|..   .|.++.| 
T Consensus        19 ~~~~~~spdg~~~~~-----------------~~dg~i~~~--d~~~g~~~----------~~~~~~~~~~~~v~~~~~S   69 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-----------------EQKGTVRLW--NVETNTST----------VLIEGKKIESLRAIRYEIS   69 (723)
T ss_dssp             CCCCCBSSSSCBCCC-----------------CSSSCEEEB--CGGGCCCE----------EEECTTTTTTTTCSEEEEC
T ss_pred             ccccEEcCCCcEEEE-----------------eCCCCEEEE--ECCCCcEE----------EEeccccccccccceEEEC
Confidence            567788888886553                 134556666  33332222          23355554   4899999 


Q ss_pred             cCC-EEEEEeCC---------CcEEEEecCCceeEEEecC---CCc-eeEEEEecCCCEEEEEcCCeEEEEecCCceee-
Q 022303          121 KRG-LILTGVGD---------KVMRLWSLEGYKCVEEYSL---PNA-ASLVDFDFDESKIVGLIGTRICIWRRNGLRSV-  185 (299)
Q Consensus       121 ~~~-~l~s~~~d---------g~i~iwd~~~~~~~~~~~~---~~~-~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~-  185 (299)
                      |++ +|++++.+         +.+.+||+.+++. ..+..   +.. +..++|+|||+.|+...++.|++||+.++... 
T Consensus        70 pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~  148 (723)
T 1xfd_A           70 PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIR  148 (723)
T ss_dssp             TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEE
T ss_pred             CCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEE
Confidence            677 88888764         7888999999876 33332   222 44599999999999555689999999876422 


Q ss_pred             -eeccCCcc-----------------ceeeeeccCCCeEEEecCCC----------------------------------
Q 022303          186 -FPSREGTF-----------------MKGLCMRYFDPEAVVGCEDG----------------------------------  213 (299)
Q Consensus       186 -~~~~~~~~-----------------~~~~~~~~~~~~l~s~~~d~----------------------------------  213 (299)
                       ........                 ...++|+|++..|++++.++                                  
T Consensus       149 ~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  228 (723)
T 1xfd_A          149 VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSI  228 (723)
T ss_dssp             EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEE
T ss_pred             EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCee
Confidence             22211111                 13478999999988876543                                  


Q ss_pred             cEEEEEcCCcceeeecccc------CCceeEEEeCCC-CeEEEEeC----CCcEEEEeCCCCceEEEeeccCCCCcE---
Q 022303          214 TARVFDMYSRKCSQIIRMH------CAPVTSLSLSED-QLIISGSS----LGSIAISGLSSDQRVATLRSTDCTGHI---  279 (299)
Q Consensus       214 ~i~iwd~~~~~~~~~~~~~------~~~i~~~~~~~~-~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~i---  279 (299)
                      .|.+||+.+++....+..+      ...+..++|+|| +++++.+.    +..|++||+.++++...+..+... .+   
T Consensus       229 ~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~~  307 (723)
T 1xfd_A          229 SLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEA-WLHRQ  307 (723)
T ss_dssp             EEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSS-CCCCC
T ss_pred             EEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCC-EEecc
Confidence            7999999988765555443      567899999999 77766643    357999999999877766543321 33   


Q ss_pred             -EEEEccCCCCeEEee
Q 022303          280 -ICLMYPQFLHMLFFL  294 (299)
Q Consensus       280 -~~~~~s~~g~~l~s~  294 (299)
                       ..++|+|||+.|+..
T Consensus       308 ~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          308 NEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             CCCCEECTTSCSEEEE
T ss_pred             CCCceEcCCCCeEEEE
Confidence             378999999988764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.71  E-value=7.6e-15  Score=121.48  Aligned_cols=186  Identities=11%  Similarity=0.031  Sum_probs=127.7

Q ss_pred             ccccCeeEEEe-cCC-EEEEEeCC-CcEEEEecC--Cce--eEEEecCCCceeEEEEecCCCEEE-EEc-CCeEEEEecC
Q 022303          110 AHSVGVDQCRM-KRG-LILTGVGD-KVMRLWSLE--GYK--CVEEYSLPNAASLVDFDFDESKIV-GLI-GTRICIWRRN  180 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~-~l~s~~~d-g~i~iwd~~--~~~--~~~~~~~~~~~~~~~~~~~~~~l~-~~~-d~~i~v~d~~  180 (299)
                      .|...+.++.| +++ +|++++.+ +.|.+|++.  +++  .+..+..+..+..++|+|+++.++ ++. ++.|.+||+.
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~  114 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  114 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence            56778888998 666 78888876 999999997  554  445565555666799999999876 544 7899999994


Q ss_pred             C---ceeeeeccCCccceeeeeccCCCeEEEec-CCCcEEEEEcCC-cceee----ecc-ccCCceeEEEeCCC-CeEEE
Q 022303          181 G---LRSVFPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYS-RKCSQ----IIR-MHCAPVTSLSLSED-QLIIS  249 (299)
Q Consensus       181 ~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~~~~~----~~~-~~~~~i~~~~~~~~-~~l~~  249 (299)
                      .   ...............+++++++..+++++ .++.|.+||+.+ ++...    .+. .....+..++|+|+ +++++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~  194 (343)
T 1ri6_A          115 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC  194 (343)
T ss_dssp             TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred             CCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEE
Confidence            2   22222212222233568999998877766 889999999987 54432    222 23446889999999 75554


Q ss_pred             -EeCCCcEEEEeCCC--Cce--EEEeec---c-CCCCcEEEEEccCCCCeEEeee
Q 022303          250 -GSSLGSIAISGLSS--DQR--VATLRS---T-DCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       250 -~~~dg~i~iwd~~~--~~~--~~~~~~---~-~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                       +..++.|.+||+..  ++.  ...+..   . .....+..++|+|+|++|+++.
T Consensus       195 ~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~  249 (343)
T 1ri6_A          195 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD  249 (343)
T ss_dssp             EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE
T ss_pred             EeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEe
Confidence             45799999999953  433  333321   1 1112577899999999887554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.71  E-value=2.8e-17  Score=150.44  Aligned_cols=180  Identities=13%  Similarity=0.023  Sum_probs=131.4

Q ss_pred             CeeEEEe-cCC-EEEEEeCCCcEEEEecCCc---eeEEEecCC-CceeEEEEecCCCEEEEEcCCeEEEEecCCceeeee
Q 022303          114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGY---KCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFP  187 (299)
Q Consensus       114 ~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~---~~~~~~~~~-~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~  187 (299)
                      .|.++.| |++ +|++++. +.|.+||+.++   +.. .+..+ ..+..++|+|||+.|+...++.|++||+.++.....
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~-~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR-QLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC-BCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEEC
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE-EcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEe
Confidence            3778888 677 7888776 99999999988   443 34444 445569999999999955678999999988653221


Q ss_pred             ccCCcc-----------------ceeeeeccCCCeEEEecCCC---------------------------------cEEE
Q 022303          188 SREGTF-----------------MKGLCMRYFDPEAVVGCEDG---------------------------------TARV  217 (299)
Q Consensus       188 ~~~~~~-----------------~~~~~~~~~~~~l~s~~~d~---------------------------------~i~i  217 (299)
                      ...+..                 ...++|+|+++.|++++.|+                                 .|.+
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~  267 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV  267 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence            111110                 13468999999988887665                                 7889


Q ss_pred             EEcCC-cceeeecc--ccCCceeEEEeCCC-CeEEEEeC-----CCcEEEEeCCCCceEEEeeccCCC--CcEEEEEccC
Q 022303          218 FDMYS-RKCSQIIR--MHCAPVTSLSLSED-QLIISGSS-----LGSIAISGLSSDQRVATLRSTDCT--GHIICLMYPQ  286 (299)
Q Consensus       218 wd~~~-~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~--~~i~~~~~s~  286 (299)
                      ||+.+ ++......  .+...+..++| || ++|++++.     +..|++||+.+++....+..+...  ..+..++|+|
T Consensus       268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp  346 (741)
T 2ecf_A          268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD  346 (741)
T ss_dssp             ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred             EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence            99988 77654432  36778999999 99 88876653     567999999999887777655421  0245789999


Q ss_pred             CCCeEEeeec
Q 022303          287 FLHMLFFLCF  296 (299)
Q Consensus       287 ~g~~l~s~s~  296 (299)
                      ||+++++++.
T Consensus       347 dg~~~~~~~~  356 (741)
T 2ecf_A          347 DGSILWSSER  356 (741)
T ss_dssp             TSCEEEEECT
T ss_pred             CCeEEEEecC
Confidence            9998877653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.71  E-value=1.7e-16  Score=144.86  Aligned_cols=178  Identities=9%  Similarity=0.012  Sum_probs=133.7

Q ss_pred             CeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCc----eeEEEEecCCCEEE-EEcC---------CeEEEE
Q 022303          114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA----ASLVDFDFDESKIV-GLIG---------TRICIW  177 (299)
Q Consensus       114 ~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~-~~~d---------~~i~v~  177 (299)
                      .+.++.| +++ ++++ +.||+|++||..+++....+..+..    +..++|+||+++|+ ++.+         +.+++|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            3556777 666 5555 7899999999999998888876653    66799999999998 6553         789999


Q ss_pred             ecCCcee-eeeccCCcc--ceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCce------------------
Q 022303          178 RRNGLRS-VFPSREGTF--MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPV------------------  236 (299)
Q Consensus       178 d~~~~~~-~~~~~~~~~--~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i------------------  236 (299)
                      |+.+++. .+....++.  ....+|+|+++.++.++. +.|++||+.+++.......+...+                  
T Consensus        97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~  175 (723)
T 1xfd_A           97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (723)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence            9988753 222222221  224689999999988876 789999999887765554433323                  


Q ss_pred             eEEEeCCC-CeEEEEeCCC----------------------------------cEEEEeCCCCceEEEeecc------CC
Q 022303          237 TSLSLSED-QLIISGSSLG----------------------------------SIAISGLSSDQRVATLRST------DC  275 (299)
Q Consensus       237 ~~~~~~~~-~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~------~~  275 (299)
                      .+++|+|| +.|++++.|+                                  .|++||+.+++....+..+      ..
T Consensus       176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~  255 (723)
T 1xfd_A          176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (723)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence            78999999 8888887553                                  7999999988866666654      33


Q ss_pred             CCcEEEEEccCCCCeEEeee
Q 022303          276 TGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       276 ~~~i~~~~~s~~g~~l~s~s  295 (299)
                        .+.+++|+|||++|++.+
T Consensus       256 --~~~~~~~SpDg~~l~~~~  273 (723)
T 1xfd_A          256 --YITMVKWATSTKVAVTWL  273 (723)
T ss_dssp             --EEEEEEESSSSEEEEEEE
T ss_pred             --eeEEEEEeCCCeEEEEEE
Confidence              789999999999887653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.70  E-value=8.8e-16  Score=140.56  Aligned_cols=180  Identities=10%  Similarity=-0.015  Sum_probs=135.2

Q ss_pred             ccCeeEEEe-cCC-EEEEEeC-CC-----cEEEEecCCceeEEEecCCCc-------------------------eeEEE
Q 022303          112 SVGVDQCRM-KRG-LILTGVG-DK-----VMRLWSLEGYKCVEEYSLPNA-------------------------ASLVD  158 (299)
Q Consensus       112 ~~~i~~~~~-~~~-~l~s~~~-dg-----~i~iwd~~~~~~~~~~~~~~~-------------------------~~~~~  158 (299)
                      ...+..+.| +++ +|++++. |+     .|++||+.+++....+..+..                         +..++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            446888999 677 8999988 88     999999999988776654321                         34599


Q ss_pred             EecCCCEEEEEcCCeEEEEecCCc---e-eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCC
Q 022303          159 FDFDESKIVGLIGTRICIWRRNGL---R-SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA  234 (299)
Q Consensus       159 ~~~~~~~l~~~~d~~i~v~d~~~~---~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  234 (299)
                      |+||++.|+.+.++.|++||+.++   . ..+..+... ....+|+|+++.++.++ ++.|++||+.+++.......+..
T Consensus       116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~-~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGF-ATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSC-EEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred             ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcc-cccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence            999999999444599999999876   4 223333333 33568999999988877 46899999998876654433332


Q ss_pred             c----------------eeEEEeCCC-CeEEEEeCCC---------------------------------cEEEEeCCC-
Q 022303          235 P----------------VTSLSLSED-QLIISGSSLG---------------------------------SIAISGLSS-  263 (299)
Q Consensus       235 ~----------------i~~~~~~~~-~~l~~~~~dg---------------------------------~i~iwd~~~-  263 (299)
                      .                +..++|+|| ++|++++.|+                                 .|.+||+.+ 
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~  273 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ  273 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred             ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence            2                478999999 8888887765                                 789999988 


Q ss_pred             CceEEEeec--cCCCCcEEEEEccCCCCeEEeeec
Q 022303          264 DQRVATLRS--TDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       264 ~~~~~~~~~--~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ++.......  +..  .+..++| |||++|+.++.
T Consensus       274 ~~~~~~~~~~~~~~--~~~~~~~-pDg~~l~~~~~  305 (741)
T 2ecf_A          274 AQTQWIDLGKEQDI--YLARVNW-RDPQHLSFQRQ  305 (741)
T ss_dssp             CCCEEECCCSCSSE--EEEEEEE-EETTEEEEEEE
T ss_pred             CceEEecCCCCcce--EEEEEEe-CCCCEEEEEEe
Confidence            776544432  334  7999999 99999997653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.70  E-value=4.5e-15  Score=122.54  Aligned_cols=146  Identities=7%  Similarity=-0.062  Sum_probs=113.6

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCC---ceeEEEEecCCCEEE--EEcCCeEEEEecCCceeeeeccCCc------
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPN---AASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGT------  192 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~~~------  192 (299)
                      ++++++.++.|.+||..+++.+..+....   .+..++|+|+++.++  ...++.|.+||+.+.+.........      
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~   82 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK   82 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence            78999999999999999999998887655   466799999998765  4457899999998775332211111      


Q ss_pred             cceeeeeccCCCeEEEec------------CCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEE
Q 022303          193 FMKGLCMRYFDPEAVVGC------------EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAIS  259 (299)
Q Consensus       193 ~~~~~~~~~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iw  259 (299)
                      ....+++++++..++++.            .++.|.+||+.+++.+..+.. ...+..++|+|+ ++++++  ++.|.+|
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~  159 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVM  159 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEE
Confidence            222468899998888775            579999999998888777754 456888999999 777777  6889999


Q ss_pred             eCCCCceEEEeec
Q 022303          260 GLSSDQRVATLRS  272 (299)
Q Consensus       260 d~~~~~~~~~~~~  272 (299)
                      |+.+++.+..+..
T Consensus       160 d~~~~~~~~~~~~  172 (337)
T 1pby_B          160 DPEAGTLVEDKPI  172 (337)
T ss_dssp             ETTTTEEEEEECS
T ss_pred             ECCCCcEeeeeec
Confidence            9998887766543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.69  E-value=1.5e-14  Score=119.49  Aligned_cols=169  Identities=12%  Similarity=0.060  Sum_probs=124.1

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEc-CCeEEEEecCCcee-eeeccC-Cccceeeee
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI-GTRICIWRRNGLRS-VFPSRE-GTFMKGLCM  199 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~-d~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~  199 (299)
                      .+++.+.++.|.+||..+++.+..+..+.....++|+|+++.++ ++. ++.|.+||..+... ...... ......+++
T Consensus        12 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~   91 (331)
T 3u4y_A           12 GIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDI   91 (331)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEE
T ss_pred             EEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEE
Confidence            68888999999999999999988877654444899999999766 544 78999999987753 222222 222222689


Q ss_pred             ccCCCeEEEecCCC---cEEEEEcCCcceeeeccccCCceeEEEeCCC-C-eEEEEeCCCc-EEEEeCCCCceEE----E
Q 022303          200 RYFDPEAVVGCEDG---TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGSSLGS-IAISGLSSDQRVA----T  269 (299)
Q Consensus       200 ~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~-i~iwd~~~~~~~~----~  269 (299)
                      ++++.+++++..++   .|.+||+.+++.+..+.. ...+.+++|+|+ + ++++...++. |.+|++.....+.    .
T Consensus        92 s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~  170 (331)
T 3u4y_A           92 TPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE  170 (331)
T ss_dssp             CTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred             CCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc
Confidence            99999988655553   899999999988887754 445799999999 6 4555566688 9999987643331    1


Q ss_pred             eeccCCCCcEEEEEccCCCCeEEeee
Q 022303          270 LRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       270 ~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ......  .+..++|+|+|++|++++
T Consensus       171 ~~~~~~--~~~~~~~spdg~~l~v~~  194 (331)
T 3u4y_A          171 FISGGT--RPFNITFTPDGNFAFVAN  194 (331)
T ss_dssp             EECSSS--SEEEEEECTTSSEEEEEE
T ss_pred             cccCCC--CccceEECCCCCEEEEEe
Confidence            112223  689999999999776655

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.67  E-value=3.6e-14  Score=118.03  Aligned_cols=188  Identities=9%  Similarity=0.066  Sum_probs=127.6

Q ss_pred             EeeccccCeeEEEe-cCC-EEEEEe-CCCcEEEEecC-Cc--eeEEEecCCC----------ceeEEEEecCCCEEE-EE
Q 022303          107 QWKAHSVGVDQCRM-KRG-LILTGV-GDKVMRLWSLE-GY--KCVEEYSLPN----------AASLVDFDFDESKIV-GL  169 (299)
Q Consensus       107 ~~~~h~~~i~~~~~-~~~-~l~s~~-~dg~i~iwd~~-~~--~~~~~~~~~~----------~~~~~~~~~~~~~l~-~~  169 (299)
                      .+..+...+..++| +++ +|++++ .++.|.+|++. ++  +.+..+....          .+..++|+|++++++ ..
T Consensus        80 ~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~  159 (347)
T 3hfq_A           80 TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL  159 (347)
T ss_dssp             EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred             eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence            33456777888888 666 777777 78999999996 33  3344443221          244599999999555 45


Q ss_pred             cCCeEEEEecC-Cceee----eeccCCccceeeeeccCCCeEEE-ecCCCcEEEEEcCC--cce--eeeccccC------
Q 022303          170 IGTRICIWRRN-GLRSV----FPSREGTFMKGLCMRYFDPEAVV-GCEDGTARVFDMYS--RKC--SQIIRMHC------  233 (299)
Q Consensus       170 ~d~~i~v~d~~-~~~~~----~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~--~~~--~~~~~~~~------  233 (299)
                      .++.|.+|++. ++...    +....+.....+++++++.++++ ...++.+.+|++..  ++.  +..+....      
T Consensus       160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~  239 (347)
T 3hfq_A          160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAH  239 (347)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSC
T ss_pred             CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCC
Confidence            57899999998 33211    12222322334689999997554 66788999999874  442  22222211      


Q ss_pred             CceeEEEeCCC-CeE-EEEeCCCcEEEEeCCCC---ceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          234 APVTSLSLSED-QLI-ISGSSLGSIAISGLSSD---QRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       234 ~~i~~~~~~~~-~~l-~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ..+..++|+|+ ++| ++...++.|.+|++...   +.+..+..+..  .+..++|+|+|++|++++.
T Consensus       240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~--~~~~~~~spdg~~l~v~~~  305 (347)
T 3hfq_A          240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD--FPRDFDLDPTEAFVVVVNQ  305 (347)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSS--CCCEEEECTTSSEEEEEET
T ss_pred             CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC--CcCeEEECCCCCEEEEEEc
Confidence            45889999999 766 55667899999999732   45555555444  6889999999999988764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.67  E-value=4.2e-15  Score=135.32  Aligned_cols=183  Identities=14%  Similarity=0.050  Sum_probs=132.9

Q ss_pred             cCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCC-----ceeee
Q 022303          113 VGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNG-----LRSVF  186 (299)
Q Consensus       113 ~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~-----~~~~~  186 (299)
                      ..|.++.| +++.++.+ .++.|++||+.+++..........+..++|+|+++.|+.+.++.|++||+.+     ++...
T Consensus        82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~  160 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIA  160 (706)
T ss_dssp             CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEE
T ss_pred             cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEE
Confidence            56899999 55655544 4599999999998876655554555569999999999977899999999987     54221


Q ss_pred             --eccCCcc-------------ceeeeeccCCCeEEEec---------------------------------CCCcEEEE
Q 022303          187 --PSREGTF-------------MKGLCMRYFDPEAVVGC---------------------------------EDGTARVF  218 (299)
Q Consensus       187 --~~~~~~~-------------~~~~~~~~~~~~l~s~~---------------------------------~d~~i~iw  218 (299)
                        .......             ...++|+|++..|++++                                 .+..|.+|
T Consensus       161 ~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~  240 (706)
T 2z3z_A          161 VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIY  240 (706)
T ss_dssp             SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEE
T ss_pred             eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEE
Confidence              1111111             13568999999988876                                 44679999


Q ss_pred             EcCCcceeeecc--ccCCceeEEEeCCC-CeEEEEeCCC-----cEEEEeCCCCceEEEeec-cCCC--CcEEEEEccC-
Q 022303          219 DMYSRKCSQIIR--MHCAPVTSLSLSED-QLIISGSSLG-----SIAISGLSSDQRVATLRS-TDCT--GHIICLMYPQ-  286 (299)
Q Consensus       219 d~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~-~~~~--~~i~~~~~s~-  286 (299)
                      |+.+++......  .+...+..++|+|| +.|++++.++     .|++||+.+++....+.. ....  ..+.+++|+| 
T Consensus       241 d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~  320 (706)
T 2z3z_A          241 HLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPG  320 (706)
T ss_dssp             ETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTT
T ss_pred             ECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecC
Confidence            999887654432  45677999999999 8888877765     899999999844444432 2210  0246789999 


Q ss_pred             -CCCeEEeeec
Q 022303          287 -FLHMLFFLCF  296 (299)
Q Consensus       287 -~g~~l~s~s~  296 (299)
                       +|++|++++.
T Consensus       321 ~dg~~l~~~~~  331 (706)
T 2z3z_A          321 SNNQFIWQSRR  331 (706)
T ss_dssp             CSSEEEEEECT
T ss_pred             CCCEEEEEEcc
Confidence             9998887753

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.66  E-value=1.1e-15  Score=144.96  Aligned_cols=225  Identities=11%  Similarity=0.103  Sum_probs=158.0

Q ss_pred             hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCee
Q 022303           37 SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVD  116 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~  116 (299)
                      .+.+|...+.++.|+++ ..+++                ...+...++|..+..           ....+.+..|. .+.
T Consensus       198 ~l~~~~~~v~~~~~s~d-~l~~~----------------~~~dg~~~l~~~~~~-----------g~~~~~l~~~~-~~~  248 (1045)
T 1k32_A          198 KIVDMSTHVSSPVIVGH-RIYFI----------------TDIDGFGQIYSTDLD-----------GKDLRKHTSFT-DYY  248 (1045)
T ss_dssp             EEECCSSCCEEEEEETT-EEEEE----------------ECTTSSCEEEEEETT-----------SCSCEECCCCC-SSC
T ss_pred             ECcCCCCcccceEEeCC-EEEEE----------------EeccCceEEEEEeCC-----------CCcceEecCCC-Ccc
Confidence            33578888888888777 22222                113345566633111           11122334454 355


Q ss_pred             EEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCC------------ceeEEEEe-cCCCEEEEEcCCeEEEEecCC
Q 022303          117 QCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN------------AASLVDFD-FDESKIVGLIGTRICIWRRNG  181 (299)
Q Consensus       117 ~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~~~~~~-~~~~~l~~~~d~~i~v~d~~~  181 (299)
                      ...| +++ .|+.+ .++.|.+||....+ +..+..+.            .+..++|+ |+++.++...++.+++|+..+
T Consensus       249 ~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~  326 (1045)
T 1k32_A          249 PRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSG  326 (1045)
T ss_dssp             EEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTS
T ss_pred             eeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCC
Confidence            5677 676 67776 58999999995444 33554422            35569999 999999844589999999987


Q ss_pred             cee-eeeccCCccceeeeeccCCCeEEEecCCCcEE-EEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEE
Q 022303          182 LRS-VFPSREGTFMKGLCMRYFDPEAVVGCEDGTAR-VFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI  258 (299)
Q Consensus       182 ~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~-iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~i  258 (299)
                      ... .+..+.+......+|+ ++..++.++.++.+. +||+..++.... ..+...+..++|+|+ ++|++++.++.|++
T Consensus       327 ~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~v~~  404 (1045)
T 1k32_A          327 TYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAVVANDRFEIMT  404 (1045)
T ss_dssp             SBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEEEECCCCeEEE
Confidence            642 2333333123345777 777788888888888 899987765443 377788999999999 99999999999999


Q ss_pred             EeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          259 SGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       259 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ||+.+++.......+..  .+.+++|+|||++|++++.
T Consensus       405 ~d~~tg~~~~~~~~~~~--~v~~~~~SpDG~~la~~~~  440 (1045)
T 1k32_A          405 VDLETGKPTVIERSREA--MITDFTISDNSRFIAYGFP  440 (1045)
T ss_dssp             EETTTCCEEEEEECSSS--CCCCEEECTTSCEEEEEEE
T ss_pred             EECCCCceEEeccCCCC--CccceEECCCCCeEEEEec
Confidence            99999998877767776  8899999999999988764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.66  E-value=1.4e-14  Score=120.16  Aligned_cols=172  Identities=12%  Similarity=0.043  Sum_probs=125.5

Q ss_pred             CeeEEEe-cCC-E-EEEEeCCCcEEEEecCCceeEEEecCCCc-------eeEEEEecCCCEEE-EEcC-----------
Q 022303          114 GVDQCRM-KRG-L-ILTGVGDKVMRLWSLEGYKCVEEYSLPNA-------ASLVDFDFDESKIV-GLIG-----------  171 (299)
Q Consensus       114 ~i~~~~~-~~~-~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~-~~~d-----------  171 (299)
                      .+..+.+ +++ + ++++..++.|.+||+.+++.+..+..+..       +..++|+|+++.++ +..+           
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            4667777 666 4 45666789999999999998887775432       44599999999988 6544           


Q ss_pred             -CeEEEEecCCcee-----eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccC------------
Q 022303          172 -TRICIWRRNGLRS-----VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC------------  233 (299)
Q Consensus       172 -~~i~v~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------  233 (299)
                       +.|.+||+.+++.     ...... . ...+++++++. +++++.  .|.+||+.+++.+..+..+.            
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~~~~-~-~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFPMPR-Q-VYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL  198 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEECCS-S-CCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCC
T ss_pred             CCeEEEEECCCccccceeeeccCCC-c-ccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccce
Confidence             8999999987431     122222 2 22457889988 666544  49999999887766553221            


Q ss_pred             --------------------------------------------------------CceeEEEeCC-C-CeEEEEeCCCc
Q 022303          234 --------------------------------------------------------APVTSLSLSE-D-QLIISGSSLGS  255 (299)
Q Consensus       234 --------------------------------------------------------~~i~~~~~~~-~-~~l~~~~~dg~  255 (299)
                                                                              ..+..++++| + ++++++  ++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~  276 (349)
T 1jmx_B          199 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR  276 (349)
T ss_dssp             CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE
T ss_pred             eeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe
Confidence                                                                    1345677789 8 777777  889


Q ss_pred             EEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          256 IAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       256 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      |.+||+.+++.+..+....   .+.+++|+|+|++|++++
T Consensus       277 v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~  313 (349)
T 1jmx_B          277 LAKYDLKQRKLIKAANLDH---TYYCVAFDKKGDKLYLGG  313 (349)
T ss_dssp             EEEEETTTTEEEEEEECSS---CCCEEEECSSSSCEEEES
T ss_pred             EEEEECccCeEEEEEcCCC---CccceEECCCCCEEEEec
Confidence            9999999999888887544   578999999999888764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.65  E-value=6.5e-15  Score=139.72  Aligned_cols=179  Identities=15%  Similarity=0.138  Sum_probs=141.3

Q ss_pred             cccCeeEEEec--CC-EEEEEeCCCcEEEEecCCceeEEEecCCC--ceeEEEEecCCCEEE-EEcCCeEE-EEecCCce
Q 022303          111 HSVGVDQCRMK--RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIV-GLIGTRIC-IWRRNGLR  183 (299)
Q Consensus       111 h~~~i~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~-~~~d~~i~-v~d~~~~~  183 (299)
                      |...+..+.|+  ++ +|++++ ++.+.+|+..+++... +..+.  .+..++|+ +++.++ ++.++.+. +||..+..
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~  370 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK  370 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC
Confidence            56678888885  55 777777 8899999998887654 44443  34458999 998888 77788888 99988764


Q ss_pred             e-eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCC-------
Q 022303          184 S-VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG-------  254 (299)
Q Consensus       184 ~-~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg-------  254 (299)
                      . .+..+... ...++|+|++..+++++.++.|++||+.+++.......|...+..++|+|| ++|++++.++       
T Consensus       371 ~~~l~~~~~~-~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~  449 (1045)
T 1k32_A          371 AEKFEENLGN-VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY  449 (1045)
T ss_dssp             EEECCCCCCS-EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred             ceEecCCccc-eeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCC
Confidence            2 22222222 335689999999999999999999999999887777678888999999999 8888887654       


Q ss_pred             ---cEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          255 ---SIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       255 ---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                         .|++||+.+++ +..+..+..  .+..++|+|||++|+.++.
T Consensus       450 ~~~~i~l~d~~~g~-~~~l~~~~~--~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          450 VMQAIHVYDMEGRK-IFAATTENS--HDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             CEEEEEEEETTTTE-EEECSCSSS--BEEEEEECTTSCEEEEEES
T ss_pred             CCCeEEEEECCCCc-EEEeeCCCc--ccCCceEcCCCCEEEEEec
Confidence               89999999887 666766666  7899999999999988764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.65  E-value=1.6e-14  Score=119.89  Aligned_cols=148  Identities=9%  Similarity=0.039  Sum_probs=110.6

Q ss_pred             cCC-EEEEEeCCCcEEEEecCCceeEEEecCCC--ceeEEEEecCCCEEE--EEcCCeEEEEecCCceeeeecc--C---
Q 022303          121 KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSR--E---  190 (299)
Q Consensus       121 ~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~--~---  190 (299)
                      +++ ++++++.++.|.+||..+++.+..+..+.  ....++|+|+++.++  ...++.|.+||+.+.+......  .   
T Consensus         9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~   88 (349)
T 1jmx_B            9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG   88 (349)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccc
Confidence            344 88999999999999999999998888665  566799999998765  4468899999998876432221  1   


Q ss_pred             --CccceeeeeccCCCeEEEecCC------------CcEEEEEcCCccee---eeccccCCceeEEEeCCC-CeEEEEeC
Q 022303          191 --GTFMKGLCMRYFDPEAVVGCED------------GTARVFDMYSRKCS---QIIRMHCAPVTSLSLSED-QLIISGSS  252 (299)
Q Consensus       191 --~~~~~~~~~~~~~~~l~s~~~d------------~~i~iwd~~~~~~~---~~~~~~~~~i~~~~~~~~-~~l~~~~~  252 (299)
                        +.....+++++++..+++++.+            +.|.+||+.+++..   ..+ .+...+.+++|+|+ + +++++.
T Consensus        89 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~-l~~~~~  166 (349)
T 1jmx_B           89 EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGS-LYVAGP  166 (349)
T ss_dssp             EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSC-EEEESS
T ss_pred             cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCCc-EEEccC
Confidence              1112346899999998888755            89999999985543   333 23446889999999 7 555543


Q ss_pred             CCcEEEEeCCCCceEEEeec
Q 022303          253 LGSIAISGLSSDQRVATLRS  272 (299)
Q Consensus       253 dg~i~iwd~~~~~~~~~~~~  272 (299)
                        .|.+||+.+++.+..+..
T Consensus       167 --~i~~~d~~~~~~~~~~~~  184 (349)
T 1jmx_B          167 --DIYKMDVKTGKYTVALPL  184 (349)
T ss_dssp             --SEEEECTTTCCEEEEECS
T ss_pred             --cEEEEeCCCCceeccccc
Confidence              499999999888776653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.64  E-value=1.5e-15  Score=138.67  Aligned_cols=174  Identities=13%  Similarity=-0.011  Sum_probs=126.4

Q ss_pred             EEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCCc----eeEEEEecCCCEEE-EEc---------CCeEEEEecCC
Q 022303          117 QCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA----ASLVDFDFDESKIV-GLI---------GTRICIWRRNG  181 (299)
Q Consensus       117 ~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~-~~~---------d~~i~v~d~~~  181 (299)
                      .+.| +++.++..+.|++|++||+.+++....+..+..    +..++|+|||+.|+ ++.         ++.|++||+.+
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~   99 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN   99 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence            4566 666555566799999999999998877765533    66799999999998 554         68999999988


Q ss_pred             ceeee-eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc-ccCCce-----------------eEEEeC
Q 022303          182 LRSVF-PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-MHCAPV-----------------TSLSLS  242 (299)
Q Consensus       182 ~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i-----------------~~~~~~  242 (299)
                      ++... ...... ....+|+|+++.|+.+. ++.|++||+.+++...... ++...|                 .+++|+
T Consensus       100 g~~~~~~~l~~~-~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS  177 (719)
T 1z68_A          100 GEFVRGNELPRP-IQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS  177 (719)
T ss_dssp             TEECCSSCCCSS-BCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred             CccccceecCcc-cccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence            76411 111122 22469999999988875 7899999998877654321 222222                 489999


Q ss_pred             CC-CeEEEEeCCC----------------------------------cEEEEeCCCCceE--EE------eeccCCCCcE
Q 022303          243 ED-QLIISGSSLG----------------------------------SIAISGLSSDQRV--AT------LRSTDCTGHI  279 (299)
Q Consensus       243 ~~-~~l~~~~~dg----------------------------------~i~iwd~~~~~~~--~~------~~~~~~~~~i  279 (299)
                      || ++|++++.|.                                  .|++||+.+++..  ..      +..+..  .+
T Consensus       178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~  255 (719)
T 1z68_A          178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY--YF  255 (719)
T ss_dssp             TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE--EE
T ss_pred             CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc--eE
Confidence            99 8999887652                                  7889999887653  12      223444  78


Q ss_pred             EEEEccCCCCeEEee
Q 022303          280 ICLMYPQFLHMLFFL  294 (299)
Q Consensus       280 ~~~~~s~~g~~l~s~  294 (299)
                      .+++|+||++++++.
T Consensus       256 ~~~~~SpD~~~~~~~  270 (719)
T 1z68_A          256 SWLTWVTDERVCLQW  270 (719)
T ss_dssp             EEEEESSSSEEEEEE
T ss_pred             EEeEEeCCCeEEEEE
Confidence            999999998877763

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.62  E-value=1.6e-15  Score=138.34  Aligned_cols=178  Identities=10%  Similarity=-0.000  Sum_probs=125.9

Q ss_pred             CeeEEEe-cCC-EEEEEeC---------CCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCc
Q 022303          114 GVDQCRM-KRG-LILTGVG---------DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGL  182 (299)
Q Consensus       114 ~i~~~~~-~~~-~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~  182 (299)
                      .|.++.| |++ +|++++.         ++.|++||+.+++.+........+..++|+|||+.|+...++.|++||+.++
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g  140 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGD  140 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTS
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCC
Confidence            3889999 677 7887776         7899999999988732122234455699999999999667899999999876


Q ss_pred             eeeeeccCCcc-------------------ceeeeeccCCCeEEEecCCC------------------------------
Q 022303          183 RSVFPSREGTF-------------------MKGLCMRYFDPEAVVGCEDG------------------------------  213 (299)
Q Consensus       183 ~~~~~~~~~~~-------------------~~~~~~~~~~~~l~s~~~d~------------------------------  213 (299)
                      ........+..                   ...++|+|+++.|++++.|.                              
T Consensus       141 ~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~  220 (719)
T 1z68_A          141 PPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAK  220 (719)
T ss_dssp             CCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSC
T ss_pred             CcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCC
Confidence            53221111110                   12468999999988876542                              


Q ss_pred             ----cEEEEEcCCccee--------eeccccCCceeEEEeCCC-CeEEEEeCC----CcEEEEe----CCCCceEEEe--
Q 022303          214 ----TARVFDMYSRKCS--------QIIRMHCAPVTSLSLSED-QLIISGSSL----GSIAISG----LSSDQRVATL--  270 (299)
Q Consensus       214 ----~i~iwd~~~~~~~--------~~~~~~~~~i~~~~~~~~-~~l~~~~~d----g~i~iwd----~~~~~~~~~~--  270 (299)
                          .|++||+.+++..        ..+..|...+..++|+|| +++++....    ..|.+||    +.++++...+  
T Consensus       221 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~  300 (719)
T 1z68_A          221 NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEH  300 (719)
T ss_dssp             CCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEE
T ss_pred             CCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEec
Confidence                7889999987653        123357788999999999 666664432    2488999    8877765544  


Q ss_pred             --eccCCCCcEE-----EEEccCCCCeEEe
Q 022303          271 --RSTDCTGHII-----CLMYPQFLHMLFF  293 (299)
Q Consensus       271 --~~~~~~~~i~-----~~~~s~~g~~l~s  293 (299)
                        ..+..  .+.     .++|+|||+.|+.
T Consensus       301 ~~~~~~~--~~~~~~~~~~~~spdg~~l~~  328 (719)
T 1z68_A          301 IEESRTG--WAGGFFVSTPVFSYDAISYYK  328 (719)
T ss_dssp             EEECSSS--CSSSSSCCCCEECTTSSCEEE
T ss_pred             ccccCCc--eEccccCCccEECCCCCeEEE
Confidence              34444  555     7899999996654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.62  E-value=1.4e-14  Score=128.98  Aligned_cols=176  Identities=11%  Similarity=0.017  Sum_probs=123.2

Q ss_pred             cccCeeEEEe-cCC-EEEEEeC-CCcEEEEecCCceeEEEecCCC-ceeEEEEecCCCEEE-EEc---CCeEEE--Eec-
Q 022303          111 HSVGVDQCRM-KRG-LILTGVG-DKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV-GLI---GTRICI--WRR-  179 (299)
Q Consensus       111 h~~~i~~~~~-~~~-~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~---d~~i~v--~d~-  179 (299)
                      +..+|+++.+ +|+ +|++++. ||+++||++.+++.......+. .+..+.|+|+ +.++ +..   +....+  ++. 
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            3557999988 777 8888776 9999999998777665554553 4556999999 6666 443   344455  454 


Q ss_pred             -CCceeeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCC---
Q 022303          180 -NGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL---  253 (299)
Q Consensus       180 -~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d---  253 (299)
                       .+....+....+.  ...+++++++. +++.+.++.+.+||+.+++...... +..  .+++|+|| ++|++++.+   
T Consensus        99 ~~g~~~~l~~~~~~--~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~  173 (582)
T 3o4h_A           99 RPGEEQRLEAVKPM--RILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGG  173 (582)
T ss_dssp             STTCCEECTTSCSB--EEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETT
T ss_pred             CCCccccccCCCCc--eeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCC
Confidence             3333322222222  25688999876 3333444555699999887655443 233  88999999 999988877   


Q ss_pred             -CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          254 -GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       254 -g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                       +.|++||+.+++.. .+..+..  .+..++|||||++|+++.
T Consensus       174 ~~~i~~~d~~~g~~~-~l~~~~~--~~~~~~~SpDG~~l~~~~  213 (582)
T 3o4h_A          174 RVSLFTSNLSSGGLR-VFDSGEG--SFSSASISPGMKVTAGLE  213 (582)
T ss_dssp             EEEEEEEETTTCCCE-EECCSSC--EEEEEEECTTSCEEEEEE
T ss_pred             CeEEEEEcCCCCCce-EeecCCC--ccccceECCCCCEEEEcc
Confidence             78999999888754 5666666  899999999999999654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.60  E-value=3.7e-13  Score=112.60  Aligned_cols=232  Identities=11%  Similarity=0.045  Sum_probs=142.5

Q ss_pred             ccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCce-eeEEeeccccCeeEEE
Q 022303           41 FFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRI-DIDQWKAHSVGVDQCR  119 (299)
Q Consensus        41 h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~-~~~~~~~h~~~i~~~~  119 (299)
                      +......++|+|+++.|+....        .    ...+..+.+|..  .  +.     .|.. .+.....+......+.
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~--------~----~~~~~~v~~~~~--~--~~-----~g~~~~~~~~~~~~~~p~~~~  106 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNE--------F----SKDQAAVSAFAF--D--KE-----KGTLHLLNTQKTMGADPCYLT  106 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEEC--------C----SSTTCEEEEEEE--E--TT-----TTEEEEEEEEECSSSCEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEc--------c----CCCCCcEEEEEE--e--CC-----CCcEEEeeEeccCCCCcEEEE
Confidence            5566777889999987765100        0    001234444521  1  11     0111 1223334455566677


Q ss_pred             ecCCEEEEEe-CCCcEEEEecCCceeEEE------ecCCC---------ceeEEEEecCCCEEE-EE-cCCeEEEEecCC
Q 022303          120 MKRGLILTGV-GDKVMRLWSLEGYKCVEE------YSLPN---------AASLVDFDFDESKIV-GL-IGTRICIWRRNG  181 (299)
Q Consensus       120 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~~------~~~~~---------~~~~~~~~~~~~~l~-~~-~d~~i~v~d~~~  181 (299)
                      +.+.+|++++ .++.|.+|++.....+..      .....         .+..++|+|++++++ +. .++.|.+|++..
T Consensus       107 ~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~  186 (361)
T 3scy_A          107 TNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINP  186 (361)
T ss_dssp             ECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             ECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcC
Confidence            7333566555 688999999875432211      11111         124499999999776 44 478999998874


Q ss_pred             cee--------------eeeccCCccceeeeeccCCCeEEEec-CCCcEEEEEcCCcce--eeecc---ccCCceeEEEe
Q 022303          182 LRS--------------VFPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSRKC--SQIIR---MHCAPVTSLSL  241 (299)
Q Consensus       182 ~~~--------------~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~--~~~~~---~~~~~i~~~~~  241 (299)
                      ...              ......+.....+++++++..+++++ .++.|.+||+.+++.  +..+.   .+...+..++|
T Consensus       187 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~  266 (361)
T 3scy_A          187 NANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHL  266 (361)
T ss_dssp             TCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEE
T ss_pred             CCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEE
Confidence            321              11222233333578999999876665 689999999987654  22222   23345689999


Q ss_pred             CCC-CeEEEEeC--CCcEEEEeCC--CCc--eEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          242 SED-QLIISGSS--LGSIAISGLS--SDQ--RVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       242 ~~~-~~l~~~~~--dg~i~iwd~~--~~~--~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +|+ ++|+++..  ++.|.+|++.  +++  .+..+.. ..  .+.+++|+|+|++|++++.
T Consensus       267 spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~--~~~~~~~spdg~~l~~~~~  325 (361)
T 3scy_A          267 SPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GI--HPRNFIITPNGKYLLVACR  325 (361)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SS--CCCEEEECTTSCEEEEEET
T ss_pred             CCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CC--CCceEEECCCCCEEEEEEC
Confidence            999 87766655  4899999995  444  4445544 33  6889999999999988763

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.60  E-value=5.3e-14  Score=125.34  Aligned_cols=161  Identities=15%  Similarity=0.032  Sum_probs=123.8

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcC----CeEEEEecCCce-eeeeccCCccceee
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG----TRICIWRRNGLR-SVFPSREGTFMKGL  197 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d----~~i~v~d~~~~~-~~~~~~~~~~~~~~  197 (299)
                      .+++.+.++.+.+||+.+++.......+.  ..++|+|||+.++ ++.+    +.|++||+.+++ ..+..+.+.. ...
T Consensus       124 ~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~-~~~  200 (582)
T 3o4h_A          124 VVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSF-SSA  200 (582)
T ss_dssp             EEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEE-EEE
T ss_pred             EEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCcc-ccc
Confidence            44444444555599999998766555444  6699999999999 6666    689999998765 3344444433 356


Q ss_pred             eeccCCCeEEEecCCC--cEEEEEcCCcceeeeccccCCceeEEE--------eCCC-CeEEEEeCCCcEEEEeCCCCce
Q 022303          198 CMRYFDPEAVVGCEDG--TARVFDMYSRKCSQIIRMHCAPVTSLS--------LSED-QLIISGSSLGSIAISGLSSDQR  266 (299)
Q Consensus       198 ~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~i~~~~--------~~~~-~~l~~~~~dg~i~iwd~~~~~~  266 (299)
                      +|+|+++.|+++..++  .|++||+.+++.. .+..+...+..++        |+|| .++++++.|+.+++|++  ++.
T Consensus       201 ~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~  277 (582)
T 3o4h_A          201 SISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GER  277 (582)
T ss_dssp             EECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEE
T ss_pred             eECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCe
Confidence            9999999999888888  8999999988877 6667777777777        9999 89999999999999999  665


Q ss_pred             EEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          267 VATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       267 ~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +.   ....  .+.+++|+ +|+++++++.
T Consensus       278 ~~---~~~~--~v~~~~~s-dg~~l~~~s~  301 (582)
T 3o4h_A          278 VE---APQG--NHGRVVLW-RGKLVTSHTS  301 (582)
T ss_dssp             EC---CCSS--EEEEEEEE-TTEEEEEEEE
T ss_pred             ec---cCCC--ceEEEEec-CCEEEEEEcC
Confidence            54   2233  79999999 9998887664

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.58  E-value=1.1e-12  Score=109.11  Aligned_cols=186  Identities=11%  Similarity=0.090  Sum_probs=121.3

Q ss_pred             ccccCeeEEEe-cCCEEEEEeC---CCcEEEEecCCcee--EEEec-CCCceeEEEEecCCCEEE-EE-cCCeEEEEecC
Q 022303          110 AHSVGVDQCRM-KRGLILTGVG---DKVMRLWSLEGYKC--VEEYS-LPNAASLVDFDFDESKIV-GL-IGTRICIWRRN  180 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~~l~s~~~---dg~i~iwd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~-~~-~d~~i~v~d~~  180 (299)
                      .+......++| +++.|++++.   ++.|.+|++.+++.  +..+. ....+..++|+|+++.|+ ++ .++.+.+|++.
T Consensus        37 ~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           37 AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence            44556677888 6665555443   68999999987763  33333 234556699999999887 65 67899999996


Q ss_pred             Cc-e--eeeec-cCC---------ccceeeeeccCCCeEEEecCCCcEEEEEcC-Ccceee--eccc-cCCceeEEEeCC
Q 022303          181 GL-R--SVFPS-REG---------TFMKGLCMRYFDPEAVVGCEDGTARVFDMY-SRKCSQ--IIRM-HCAPVTSLSLSE  243 (299)
Q Consensus       181 ~~-~--~~~~~-~~~---------~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~--~~~~-~~~~i~~~~~~~  243 (299)
                      .. .  ..... ..+         .....+++++++..+++...++.|.+||+. +++...  .+.. ....+..++|+|
T Consensus       117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp  196 (347)
T 3hfq_A          117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP  196 (347)
T ss_dssp             TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT
T ss_pred             CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC
Confidence            32 1  11111 111         112246899999866666678899999998 454322  2222 233578899999


Q ss_pred             C-CeEEE-EeCCCcEEEEeCCC--Cce--EEEeeccCCC----CcEEEEEccCCCCeEEeee
Q 022303          244 D-QLIIS-GSSLGSIAISGLSS--DQR--VATLRSTDCT----GHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       244 ~-~~l~~-~~~dg~i~iwd~~~--~~~--~~~~~~~~~~----~~i~~~~~s~~g~~l~s~s  295 (299)
                      + +++++ +..++.|.+|++..  ++.  +..+......    ..+..++|+|+|++|++++
T Consensus       197 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~  258 (347)
T 3hfq_A          197 DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSN  258 (347)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEE
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEe
Confidence            9 75554 56788999999874  443  3333322210    1589999999999886544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.55  E-value=4.9e-15  Score=135.65  Aligned_cols=177  Identities=12%  Similarity=0.062  Sum_probs=118.6

Q ss_pred             EEEe-cCC-EEEEEeCC---------CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCceee
Q 022303          117 QCRM-KRG-LILTGVGD---------KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSV  185 (299)
Q Consensus       117 ~~~~-~~~-~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~  185 (299)
                      .+.| |++ +|+.++.+         +.+.+||+.+++..............+|+|||+.|+...++.|++|++.++...
T Consensus        66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~  145 (740)
T 4a5s_A           66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSY  145 (740)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCE
T ss_pred             ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceE
Confidence            3667 677 78887776         567799999998664333345566699999999999667899999999876422


Q ss_pred             eeccCCcc-------------------ceeeeeccCCCeEEEecCCC---------------------------------
Q 022303          186 FPSREGTF-------------------MKGLCMRYFDPEAVVGCEDG---------------------------------  213 (299)
Q Consensus       186 ~~~~~~~~-------------------~~~~~~~~~~~~l~s~~~d~---------------------------------  213 (299)
                      .-...+..                   .....|+|+++.|+.++.|.                                 
T Consensus       146 ~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~  225 (740)
T 4a5s_A          146 RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVN  225 (740)
T ss_dssp             ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCC
T ss_pred             EEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcC
Confidence            21111111                   11367999999987764221                                 


Q ss_pred             ---cEEEEEcCC---cc--eeeecc------ccCCceeEEEeCCC-CeEEEEeC----CCcEEEEeCCCCc----eE--E
Q 022303          214 ---TARVFDMYS---RK--CSQIIR------MHCAPVTSLSLSED-QLIISGSS----LGSIAISGLSSDQ----RV--A  268 (299)
Q Consensus       214 ---~i~iwd~~~---~~--~~~~~~------~~~~~i~~~~~~~~-~~l~~~~~----dg~i~iwd~~~~~----~~--~  268 (299)
                         .|.+||+.+   ++  ....+.      .+...+..++|+|| +.++....    +..|.+||+.+++    +.  .
T Consensus       226 ~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~  305 (740)
T 4a5s_A          226 PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVAR  305 (740)
T ss_dssp             CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGG
T ss_pred             CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEE
Confidence               488899988   63  222232      26778999999999 65555432    3479999999887    22  2


Q ss_pred             Ee--eccCCCCcE-----EEEEccCCCCeEE-eee
Q 022303          269 TL--RSTDCTGHI-----ICLMYPQFLHMLF-FLC  295 (299)
Q Consensus       269 ~~--~~~~~~~~i-----~~~~~s~~g~~l~-s~s  295 (299)
                      .+  ..+..  .|     ...+|+|||+.|+ ..+
T Consensus       306 ~l~~~~~~~--~v~~~~~~~p~fspDG~~l~~~~s  338 (740)
T 4a5s_A          306 QHIEMSTTG--WVGRFRPSEPHFTLDGNSFYKIIS  338 (740)
T ss_dssp             CEEEECSSS--CSSSSSCCCCEECTTSSEEEEEEE
T ss_pred             EeeeccCCc--eEccCcCCCceEcCCCCEEEEEEE
Confidence            22  23332  33     3788999999877 544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.53  E-value=7.9e-13  Score=121.06  Aligned_cols=174  Identities=7%  Similarity=-0.069  Sum_probs=122.3

Q ss_pred             CeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCce------eEEEEecCCCEEE-EEcC---------CeEE
Q 022303          114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAA------SLVDFDFDESKIV-GLIG---------TRIC  175 (299)
Q Consensus       114 ~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~-~~~d---------~~i~  175 (299)
                      ....+.| +++ +++++  |++|++||+.++++...+..+...      ..+.|+||++.|+ ++.+         +.++
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            3456788 677 66665  999999999999988777765421      1278899999998 5554         6778


Q ss_pred             EEecCCceee-eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeec-cccCCce-----------------
Q 022303          176 IWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII-RMHCAPV-----------------  236 (299)
Q Consensus       176 v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~i-----------------  236 (299)
                      +||+.+++.. +..+.+. ....+|+|+++.|+.+. ++.|++||+.+++..+.. .++...+                 
T Consensus        96 ~~d~~~~~~~~l~~~~~~-~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~  173 (740)
T 4a5s_A           96 IYDLNKRQLITEERIPNN-TQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (740)
T ss_dssp             EEETTTTEECCSSCCCTT-EEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEECCCCcEEEcccCCCc-ceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence            9999988633 2222333 33568999999988874 689999999887754422 2222222                 


Q ss_pred             eEEEeCCC-CeEEEEeCCC------------------------------------cEEEEeCCC---Cc--eEEEeec--
Q 022303          237 TSLSLSED-QLIISGSSLG------------------------------------SIAISGLSS---DQ--RVATLRS--  272 (299)
Q Consensus       237 ~~~~~~~~-~~l~~~~~dg------------------------------------~i~iwd~~~---~~--~~~~~~~--  272 (299)
                      ..+.|+|| +.||.++.|.                                    .|++||+.+   ++  ....+..  
T Consensus       174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~  253 (740)
T 4a5s_A          174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA  253 (740)
T ss_dssp             BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred             cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence            34899999 8888875322                                    488899988   73  2333432  


Q ss_pred             ----cCCCCcEEEEEccCCCCeEEe
Q 022303          273 ----TDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       273 ----~~~~~~i~~~~~s~~g~~l~s  293 (299)
                          +..  .+..++|+|||+.++.
T Consensus       254 ~~~~~~~--~~~~~~wspdg~~~~~  276 (740)
T 4a5s_A          254 SMLIGDH--YLCDVTWATQERISLQ  276 (740)
T ss_dssp             HHHTSCE--EEEEEEEEETTEEEEE
T ss_pred             cCCCCCe--EEEEEEEeCCCeEEEE
Confidence                444  7999999999996654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.51  E-value=2e-12  Score=108.42  Aligned_cols=183  Identities=7%  Similarity=-0.038  Sum_probs=123.1

Q ss_pred             ccCeeEEEe-cCC-EEEEEeCCCcEEEEecC-CceeEEEec--CCCceeEEEEecCCCE--EE-EE-------------c
Q 022303          112 SVGVDQCRM-KRG-LILTGVGDKVMRLWSLE-GYKCVEEYS--LPNAASLVDFDFDESK--IV-GL-------------I  170 (299)
Q Consensus       112 ~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~-~~~~~~~~~--~~~~~~~~~~~~~~~~--l~-~~-------------~  170 (299)
                      ...+..+++ +++ +|++++.+ .|.+|++. +++......  .+.....++++|+++.  ++ +.             .
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            346777888 666 78888888 99999997 787654333  2233445889999995  33 32             5


Q ss_pred             CCeEEEEecCC-cee--eeec---cCCccceeeeeccCCCeEEEec-CCCcEEEEEcC-Cccee--eecc--ccCCceeE
Q 022303          171 GTRICIWRRNG-LRS--VFPS---REGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMY-SRKCS--QIIR--MHCAPVTS  238 (299)
Q Consensus       171 d~~i~v~d~~~-~~~--~~~~---~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~-~~~~~--~~~~--~~~~~i~~  238 (299)
                      ++.+.+|++.. +..  ....   ........++++|+++.+++++ .++.|.+||+. +++..  ..+.  .+...+..
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~  197 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence            88999999974 321  1221   1222333568999999877654 46899999998 67643  2332  23566899


Q ss_pred             EEeCCC-CeEEEEeC-CCcEEEEeCC--CCceE---EEeeccC----CCC-------cEEEEE-ccCCCCeEEeee
Q 022303          239 LSLSED-QLIISGSS-LGSIAISGLS--SDQRV---ATLRSTD----CTG-------HIICLM-YPQFLHMLFFLC  295 (299)
Q Consensus       239 ~~~~~~-~~l~~~~~-dg~i~iwd~~--~~~~~---~~~~~~~----~~~-------~i~~~~-~s~~g~~l~s~s  295 (299)
                      ++|+|+ +++++++. ++.|.+|++.  +++..   ..+....    +..       .+..++ |+|||++|++++
T Consensus       198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~  273 (365)
T 1jof_A          198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence            999999 78877765 7899999765  56543   2232211    101       378999 999999988765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.50  E-value=9.6e-12  Score=102.73  Aligned_cols=178  Identities=11%  Similarity=0.018  Sum_probs=128.9

Q ss_pred             CeeEEEecCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEE-cCCeEEEEecCCceeeeeccCC
Q 022303          114 GVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGL-IGTRICIWRRNGLRSVFPSREG  191 (299)
Q Consensus       114 ~i~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~  191 (299)
                      ....+.+.++ +.++...++.|.+||..+++.+.++.....+..++++++++..++. .++.|.+||..+.+.......+
T Consensus        45 ~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g  124 (328)
T 3dsm_A           45 VAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECP  124 (328)
T ss_dssp             CEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECT
T ss_pred             cceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcC
Confidence            3456777666 5566666899999999999999988766667779998988544455 6899999999987633221111


Q ss_pred             c------cceeeeeccCCCeEEEec--CCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCC---------
Q 022303          192 T------FMKGLCMRYFDPEAVVGC--EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL---------  253 (299)
Q Consensus       192 ~------~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d---------  253 (299)
                      .      ....+++  .+..++.+.  .++.|.++|+.+++.+..+.. ......++++|+ ++++++..+         
T Consensus       125 ~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~  201 (328)
T 3dsm_A          125 DMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYE  201 (328)
T ss_dssp             TCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBC
T ss_pred             CccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccC
Confidence            1      1222344  456655554  488999999999988877754 334678899998 766666554         


Q ss_pred             -CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          254 -GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       254 -g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                       +.|.++|..+++....+....+. ....++|+|++++|+++.
T Consensus       202 ~~~v~~id~~t~~v~~~~~~~~g~-~p~~la~~~d~~~lyv~~  243 (328)
T 3dsm_A          202 APSLYRIDAETFTVEKQFKFKLGD-WPSEVQLNGTRDTLYWIN  243 (328)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTC-CCEEEEECTTSCEEEEES
T ss_pred             CceEEEEECCCCeEEEEEecCCCC-CceeEEEecCCCEEEEEc
Confidence             78999999999888777654322 689999999999887653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.49  E-value=4.9e-12  Score=106.60  Aligned_cols=190  Identities=8%  Similarity=-0.034  Sum_probs=130.0

Q ss_pred             eeEEeeccccCeeE-----EEe-cCC-EEEEEeC-CC--cEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-EEcC
Q 022303          104 DIDQWKAHSVGVDQ-----CRM-KRG-LILTGVG-DK--VMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GLIG  171 (299)
Q Consensus       104 ~~~~~~~h~~~i~~-----~~~-~~~-~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d  171 (299)
                      .+..+..|......     ..| |++ +|+.++. +|  .|.+||+.+++.......+.... ...|+|+++.|+ +..+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence            34555666655554     567 667 7777776 67  48888999998887776665554 478999999999 7888


Q ss_pred             CeEEEEecCCcee--eeeccCCccce-eeeeccCCCeEEE----------------------ecCCCcEEEEEcCCccee
Q 022303          172 TRICIWRRNGLRS--VFPSREGTFMK-GLCMRYFDPEAVV----------------------GCEDGTARVFDMYSRKCS  226 (299)
Q Consensus       172 ~~i~v~d~~~~~~--~~~~~~~~~~~-~~~~~~~~~~l~s----------------------~~~d~~i~iwd~~~~~~~  226 (299)
                      +.+++||+.+++.  +...+.+.... ...+++++..++.                      ...+..|.+||+.+++..
T Consensus       102 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~  181 (388)
T 3pe7_A          102 RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST  181 (388)
T ss_dssp             TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred             CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence            8999999998752  23333322211 1234666766553                      234577999999988654


Q ss_pred             eeccccCCceeEEEeCC-C-CeEEEEeCC------CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          227 QIIRMHCAPVTSLSLSE-D-QLIISGSSL------GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       227 ~~~~~~~~~i~~~~~~~-~-~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ... .+...+..++|+| + +.|+....+      ..|.++|+..++ ...+..+.....+..++|+|||+.|+..+
T Consensus       182 ~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~  256 (388)
T 3pe7_A          182 VIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGSALVYVS  256 (388)
T ss_dssp             EEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred             Eee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCCEEEEEe
Confidence            443 5667789999999 8 777776653      378888886554 34444433211578899999999887654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.49  E-value=5.6e-12  Score=105.55  Aligned_cols=178  Identities=17%  Similarity=0.162  Sum_probs=125.7

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEe----------CCCcEEEEecCCceeEEEecCC-------CceeEEEEecCCCE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGV----------GDKVMRLWSLEGYKCVEEYSLP-------NAASLVDFDFDESK  165 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  165 (299)
                      +..+..+..+  .+.+ +++ +++++.          .++.|.+||..+++.+..+...       .....++++|++++
T Consensus        44 ~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~  121 (361)
T 2oiz_A           44 LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF  121 (361)
T ss_dssp             EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE
T ss_pred             EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE
Confidence            3444555555  6777 666 777665          3678999999999998887643       23445999999999


Q ss_pred             EE-EEc--CCeEEEEecCCceeeee-cc--------------------------------C-Cccc--------------
Q 022303          166 IV-GLI--GTRICIWRRNGLRSVFP-SR--------------------------------E-GTFM--------------  194 (299)
Q Consensus       166 l~-~~~--d~~i~v~d~~~~~~~~~-~~--------------------------------~-~~~~--------------  194 (299)
                      |+ +..  ++.|.+||+.+.+.+.. ..                                . +...              
T Consensus       122 l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~  201 (361)
T 2oiz_A          122 IVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDD  201 (361)
T ss_dssp             EEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTS
T ss_pred             EEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCC
Confidence            88 543  57899999876542211 00                                0 0000              


Q ss_pred             ----------------------------------------------------e---eeeeccCCCeEEEecC--------
Q 022303          195 ----------------------------------------------------K---GLCMRYFDPEAVVGCE--------  211 (299)
Q Consensus       195 ----------------------------------------------------~---~~~~~~~~~~l~s~~~--------  211 (299)
                                                                          .   .+++++++..++++..        
T Consensus       202 ~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~  281 (361)
T 2oiz_A          202 PIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTH  281 (361)
T ss_dssp             CBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCT
T ss_pred             ceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccc
Confidence                                                                0   0233444455444322        


Q ss_pred             ---CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC--ceEEEeeccCCCCcEEEEEcc
Q 022303          212 ---DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD--QRVATLRSTDCTGHIICLMYP  285 (299)
Q Consensus       212 ---d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~i~~~~~s  285 (299)
                         .+.|.+||+.+++.+..+..+.  +.+++|+|+ ++|++++. +.|.+||..++  +.+.++.....  ....++++
T Consensus       282 ~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~--~P~~~~~~  356 (361)
T 2oiz_A          282 KFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAE--ASLQVQFH  356 (361)
T ss_dssp             TCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCS--SEEEEEEC
T ss_pred             cCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCC--CcEEEEec
Confidence               3479999999999999887665  999999999 88888886 99999999999  99988855544  68899999


Q ss_pred             CCCC
Q 022303          286 QFLH  289 (299)
Q Consensus       286 ~~g~  289 (299)
                      |+|.
T Consensus       357 p~G~  360 (361)
T 2oiz_A          357 PVGG  360 (361)
T ss_dssp             CCSC
T ss_pred             CCCC
Confidence            9985

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.48  E-value=7e-12  Score=104.77  Aligned_cols=171  Identities=8%  Similarity=0.071  Sum_probs=112.8

Q ss_pred             cCeeEEEe-cCC-EEEEE-eCCCcEEEEecCCce-------e-------EEEecCCCceeEEEEecCCCEEE-EE-cCCe
Q 022303          113 VGVDQCRM-KRG-LILTG-VGDKVMRLWSLEGYK-------C-------VEEYSLPNAASLVDFDFDESKIV-GL-IGTR  173 (299)
Q Consensus       113 ~~i~~~~~-~~~-~l~s~-~~dg~i~iwd~~~~~-------~-------~~~~~~~~~~~~~~~~~~~~~l~-~~-~d~~  173 (299)
                      ..+.++.| |++ +++++ ..++.|.+|++....       .       ............++|+|++++++ +. .++.
T Consensus       155 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~  234 (361)
T 3scy_A          155 PHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT  234 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE
T ss_pred             CcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe
Confidence            34577888 666 55554 458999999887433       1       22233344556699999999877 55 5889


Q ss_pred             EEEEecCCcee--e--eeccCC--ccceeeeeccCCCeEEEecC--CCcEEEEEcC--Ccc--eeeeccccCCceeEEEe
Q 022303          174 ICIWRRNGLRS--V--FPSREG--TFMKGLCMRYFDPEAVVGCE--DGTARVFDMY--SRK--CSQIIRMHCAPVTSLSL  241 (299)
Q Consensus       174 i~v~d~~~~~~--~--~~~~~~--~~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~--~~~--~~~~~~~~~~~i~~~~~  241 (299)
                      |.+|++.++..  .  ......  .....+++++++++++++..  ++.|.+|++.  +++  .+..+.. ...+..++|
T Consensus       235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~  313 (361)
T 3scy_A          235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFII  313 (361)
T ss_dssp             EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEE
T ss_pred             EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEE
Confidence            99999986532  1  111111  11235689999998766554  5899999986  344  3444433 556889999


Q ss_pred             CCC-CeEEEEe-CCCcEEEE--eCCCCceEEEeeccCCCCcEEEEEcc
Q 022303          242 SED-QLIISGS-SLGSIAIS--GLSSDQRVATLRSTDCTGHIICLMYP  285 (299)
Q Consensus       242 ~~~-~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~i~~~~~s  285 (299)
                      +|+ ++|++++ .++.|.+|  |..+++........... .+.|++|.
T Consensus       314 spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~-~p~~v~~~  360 (361)
T 3scy_A          314 TPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVD-KPVCLKFV  360 (361)
T ss_dssp             CTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECS-SEEEEEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCC-CCeEEEEc
Confidence            999 8777777 67899995  55567655443222222 68888885

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.48  E-value=5.1e-12  Score=101.66  Aligned_cols=169  Identities=11%  Similarity=0.056  Sum_probs=127.5

Q ss_pred             cCCEEEEEeCCCcEEEEecCCceeEEEecCCC--ceeEEEEecCCCEEEEEcCCeEEEEecCCceeeeeccC--Ccccee
Q 022303          121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSRE--GTFMKG  196 (299)
Q Consensus       121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~  196 (299)
                      |+++|++++.|+.|.+||.++++.+.++..+.  ....+.+.|++++++ +.++.|+.||. +++.+.....  ......
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence            34489999999999999999999999998765  455699999999888 66889999999 5543333222  122223


Q ss_pred             eeeccCCCeEEEecC-CCcEEEEEcCCcceeeeccc------cCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEE
Q 022303          197 LCMRYFDPEAVVGCE-DGTARVFDMYSRKCSQIIRM------HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVA  268 (299)
Q Consensus       197 ~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~------~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~  268 (299)
                      ..+.+++..+++.+. ++.+..+|. +++.+..+..      +......+++.++ +++++...++.|..||.. |+.+.
T Consensus        82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w  159 (276)
T 3no2_A           82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN  159 (276)
T ss_dssp             EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE
Confidence            467788888888776 778888886 6777766641      2223455667788 899999999999999997 99999


Q ss_pred             EeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          269 TLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       269 ~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ++....   .+.++.+.++|..+++++.
T Consensus       160 ~~~~~~---~~~~~~~~~~g~~~v~~~~  184 (276)
T 3no2_A          160 SVKLSG---TPFSSAFLDNGDCLVACGD  184 (276)
T ss_dssp             EEECSS---CCCEEEECTTSCEEEECBT
T ss_pred             EEECCC---CccceeEcCCCCEEEEeCC
Confidence            987754   4667788899998887653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.46  E-value=7.3e-11  Score=95.27  Aligned_cols=182  Identities=12%  Similarity=0.126  Sum_probs=127.9

Q ss_pred             ccccCeeEEEe-c-CCEEEEEeC--CCcEEEEecCCceeEEEecCC--CceeEEEEecCCCEEE-EEcCCeEEEEecCCc
Q 022303          110 AHSVGVDQCRM-K-RGLILTGVG--DKVMRLWSLEGYKCVEEYSLP--NAASLVDFDFDESKIV-GLIGTRICIWRRNGL  182 (299)
Q Consensus       110 ~h~~~i~~~~~-~-~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~  182 (299)
                      +|...+..+++ + ++.++.+..  ++.|.+|| .+++.+..+...  ..+..+++++++++++ ...++.|.+||....
T Consensus        74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~  152 (286)
T 1q7f_A           74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN  152 (286)
T ss_dssp             TCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred             ccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC
Confidence            34557788888 3 455555543  89999999 567777766532  3455699999998777 456789999997654


Q ss_pred             ee-eeec-cCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc--CCceeEEEeCCC-CeEEEEeCCC-cE
Q 022303          183 RS-VFPS-REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH--CAPVTSLSLSED-QLIISGSSLG-SI  256 (299)
Q Consensus       183 ~~-~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~-~~l~~~~~dg-~i  256 (299)
                      .. .+.. ........+++.+++..+++...++.|.+||.. ++.+..+...  ...+..++++++ +++++...++ .|
T Consensus       153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i  231 (286)
T 1q7f_A          153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNL  231 (286)
T ss_dssp             EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred             EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEE
Confidence            32 2221 111223356788877767777778999999975 5666666432  356899999998 8788877775 99


Q ss_pred             EEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          257 AISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      .+||. +++.+..+..+.....+.+++++|+|+++++.
T Consensus       232 ~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~  268 (286)
T 1q7f_A          232 TIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLAS  268 (286)
T ss_dssp             EEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEE
T ss_pred             EEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEEC
Confidence            99996 57777777665432258899999999877763

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.44  E-value=4.3e-12  Score=106.05  Aligned_cols=166  Identities=12%  Similarity=0.116  Sum_probs=121.1

Q ss_pred             CeeEEEec--CCEEEEEeCCCcEEEEecCCce-----------eEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecC
Q 022303          114 GVDQCRMK--RGLILTGVGDKVMRLWSLEGYK-----------CVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRN  180 (299)
Q Consensus       114 ~i~~~~~~--~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~  180 (299)
                      +++.+++.  .+++++|+.++ +.+|++++..           .......+. +..++|  +++.|+.+.++.|++||+.
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~  114 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALYSLDLE  114 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEEEEESS
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEEEEEch
Confidence            57778883  33899999875 4559865433           223344455 666999  8899984499999999987


Q ss_pred             Cce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEE
Q 022303          181 GLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAI  258 (299)
Q Consensus       181 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i  258 (299)
                      +..  .....+....   ..+.+..+.++++..||.+.+||+.++....    +...|++++|+|+. ++.|..||++++
T Consensus       115 sl~~~~~~~~~~~~v---~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG-~~vg~~dg~i~~  186 (388)
T 1xip_A          115 ELSEFRTVTSFEKPV---FQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ-LAVLLKDRSFQS  186 (388)
T ss_dssp             STTCEEEEEECSSCE---EEEEECSSEEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE-EEEEETTSCEEE
T ss_pred             hhhccCccceeecce---eeEEecCCCEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc-eEEEEcCCcEEE
Confidence            653  2233333333   2444555568999999999999999877643    34579999999997 678999999999


Q ss_pred             EeCCCCce--EEEe------e---ccCCCCcEEEEEccCCCCeEEe
Q 022303          259 SGLSSDQR--VATL------R---STDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       259 wd~~~~~~--~~~~------~---~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      |+...++.  ..++      .   .+..  .|.++.|.+++.+|++
T Consensus       187 ~~~~~~~~~~k~~I~~Pp~~~~~~~~~~--~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          187 FAWRNGEMEKQFEFSLPSELEELPVEEY--SPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEETTEEEEEEEECCCHHHHTSCTTTS--EEEEEEESSSSEEEEE
T ss_pred             EcCCCccccccceecCCcccccccCCCe--eEEEEEEecCCeEEEE
Confidence            99887765  5566      2   2333  8999999999999875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.43  E-value=6.3e-14  Score=118.24  Aligned_cols=184  Identities=10%  Similarity=-0.045  Sum_probs=116.8

Q ss_pred             eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE---EEEecCCCEEEEE--------------
Q 022303          109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL---VDFDFDESKIVGL--------------  169 (299)
Q Consensus       109 ~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~--------------  169 (299)
                      .++...+..+.| +++ .|+.++.++.|++||+.+++....+..+.....   ..++++++.+++.              
T Consensus        77 ~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~  156 (388)
T 3pe7_A           77 EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWK  156 (388)
T ss_dssp             CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred             eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccc
Confidence            456556555667 677 899999999999999999988777766655432   3458999988732              


Q ss_pred             ---------cCCeEEEEecCCcee-eeeccCCccceeeeecc-CCCeEEEecCC------CcEEEEEcCCcceeeecccc
Q 022303          170 ---------IGTRICIWRRNGLRS-VFPSREGTFMKGLCMRY-FDPEAVVGCED------GTARVFDMYSRKCSQIIRMH  232 (299)
Q Consensus       170 ---------~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~-~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~  232 (299)
                               .+..|++||+.+++. .+....... ....++| ++..++....+      ..|.++|...++. ..+..+
T Consensus       157 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~  234 (388)
T 3pe7_A          157 KFHEFYFTKPCCRLMRVDLKTGESTVILQENQWL-GHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTH  234 (388)
T ss_dssp             HHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCE-EEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCC
T ss_pred             hhhhhhccCCcceEEEEECCCCceEEeecCCccc-cccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeC
Confidence                     236899999987752 222222222 3458899 88887665543      3788888875544 333333


Q ss_pred             C--CceeEEEeCCC-CeEEEEeC-CC----cEEEEeCCCCceE--EEeeccCCC-CcEEEEEccCCCCeEEee
Q 022303          233 C--APVTSLSLSED-QLIISGSS-LG----SIAISGLSSDQRV--ATLRSTDCT-GHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       233 ~--~~i~~~~~~~~-~~l~~~~~-dg----~i~iwd~~~~~~~--~~~~~~~~~-~~i~~~~~s~~g~~l~s~  294 (299)
                      .  ..+..++|+|| +.|+..+. ++    .|++||+.+++..  ..+...... .....++|+|||+.|+..
T Consensus       235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~  307 (388)
T 3pe7_A          235 AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVD  307 (388)
T ss_dssp             CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---
T ss_pred             CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeE
Confidence            3  35788999999 76655433 22    3999999988743  333221000 001123689999888753

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.43  E-value=1.1e-10  Score=96.27  Aligned_cols=179  Identities=11%  Similarity=0.080  Sum_probs=125.2

Q ss_pred             ccCeeEEEe-cCC-EEEEEeCC------------------------CcEEEEecCCceeEEEecCC--CceeEEEEecCC
Q 022303          112 SVGVDQCRM-KRG-LILTGVGD------------------------KVMRLWSLEGYKCVEEYSLP--NAASLVDFDFDE  163 (299)
Q Consensus       112 ~~~i~~~~~-~~~-~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~  163 (299)
                      -+.+.++++ +++ ++++...+                        ++|.+||..+++.+..+...  ..+..+++++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            457888998 556 66666666                        47999999999987766532  245569999999


Q ss_pred             CEEE-EEcCCeEEEEecCCce---eeeecc------CCc--cceeeeecc-CCCeEEEec-CCCcEEEEEcCCcceeeec
Q 022303          164 SKIV-GLIGTRICIWRRNGLR---SVFPSR------EGT--FMKGLCMRY-FDPEAVVGC-EDGTARVFDMYSRKCSQII  229 (299)
Q Consensus       164 ~~l~-~~~d~~i~v~d~~~~~---~~~~~~------~~~--~~~~~~~~~-~~~~l~s~~-~d~~i~iwd~~~~~~~~~~  229 (299)
                      ++++ ...++.|++||..+..   ..+...      .+.  ....+++.+ .+..+++.+ .++.|++|| .+++.+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            9777 5667899999987652   111110      111  223468888 555566665 689999999 557777666


Q ss_pred             cc----------cCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEE
Q 022303          230 RM----------HCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLF  292 (299)
Q Consensus       230 ~~----------~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  292 (299)
                      ..          +-..+..++++|+  .++++...++.|++||..+++.+.++........+.+++|+| |..+.
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~  255 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFA  255 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEE
Confidence            42          2234889999987  566666778999999998899998886443222788999999 43333

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.41  E-value=1.4e-10  Score=93.50  Aligned_cols=183  Identities=12%  Similarity=0.088  Sum_probs=127.5

Q ss_pred             ccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecC------C-CceeEEEEe-cCCCEEEEEc--CCeEEEE
Q 022303          110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSL------P-NAASLVDFD-FDESKIVGLI--GTRICIW  177 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~------~-~~~~~~~~~-~~~~~l~~~~--d~~i~v~  177 (299)
                      ++-....++++ +++ ++++...++.|.+||.. ++.+..+..      + ..+..++++ ++++++++..  ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            55667888888 555 67777889999999987 666666542      1 234458884 6666666553  8899999


Q ss_pred             ecCCcee-eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc--ccCCceeEEEeCCC-CeEEEEeCC
Q 022303          178 RRNGLRS-VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED-QLIISGSSL  253 (299)
Q Consensus       178 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~d  253 (299)
                      |...... .+..........+++.+++..+++...++.|.+||.. ++.+..+.  .+...+..++++++ +++++...+
T Consensus       106 d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~  184 (286)
T 1q7f_A          106 NQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA  184 (286)
T ss_dssp             CTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             CCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence            9544322 2222121223346788888767777778999999965 55555553  33456899999998 777777789


Q ss_pred             CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          254 GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       254 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      +.|++||. +++.+..+........+.+++++|+|+++++..
T Consensus       185 ~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~  225 (286)
T 1q7f_A          185 HCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADN  225 (286)
T ss_dssp             TEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC
T ss_pred             CEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeC
Confidence            99999997 567777775442112789999999998887764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.40  E-value=8.8e-11  Score=103.60  Aligned_cols=172  Identities=10%  Similarity=-0.010  Sum_probs=129.7

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecC--CceeeeeccCCccceeeeec
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRN--GLRSVFPSREGTFMKGLCMR  200 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~--~~~~~~~~~~~~~~~~~~~~  200 (299)
                      ++++...++.|.++|..+++.+..+.....+..+.++|++++++ ++.++.|.+||+.  +.+.+.....+.....++++
T Consensus       169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s  248 (567)
T 1qks_A          169 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS  248 (567)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred             EEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEc
Confidence            67778889999999999999999998776666799999999988 8889999999995  55444333334334456888


Q ss_pred             ----cCCCeEEEec-CCCcEEEEEcCCcceeeecccc----------CC-ceeEEEeCCC--CeEEEEeCCCcEEEEeCC
Q 022303          201 ----YFDPEAVVGC-EDGTARVFDMYSRKCSQIIRMH----------CA-PVTSLSLSED--QLIISGSSLGSIAISGLS  262 (299)
Q Consensus       201 ----~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~----------~~-~i~~~~~~~~--~~l~~~~~dg~i~iwd~~  262 (299)
                          |++.+++++. .++.+.++|..+.+.+..+...          .. .+..+..+++  .+++....+|.|.++|..
T Consensus       249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~  328 (567)
T 1qks_A          249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT  328 (567)
T ss_dssp             CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred             cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecC
Confidence                6888866655 4689999999999888776421          12 5778888876  566777778999999998


Q ss_pred             CCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          263 SDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       263 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ..+.+......... ....+.|+|+|+++++++.
T Consensus       329 ~~~~~~v~~i~~~~-~~~d~~~~pdgr~~~va~~  361 (567)
T 1qks_A          329 DLNNLKTTEISAER-FLHDGGLDGSHRYFITAAN  361 (567)
T ss_dssp             CSSEEEEEEEECCS-SEEEEEECTTSCEEEEEEG
T ss_pred             CCccceeeeeeccc-cccCceECCCCCEEEEEeC
Confidence            76433322222222 6889999999999988764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.40  E-value=4.9e-11  Score=98.47  Aligned_cols=184  Identities=11%  Similarity=0.011  Sum_probs=126.9

Q ss_pred             ccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCce-eEEEec---------CC-CceeEEEEec-CCCEEEEE--cCCe
Q 022303          110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK-CVEEYS---------LP-NAASLVDFDF-DESKIVGL--IGTR  173 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~---------~~-~~~~~~~~~~-~~~~l~~~--~d~~  173 (299)
                      ++-.....+++ +++ ++++...++.|++||..... .+..+.         .+ ..+..++++| ++.++++.  .++.
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~  167 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR  167 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence            34456788888 556 77788888999999986442 455442         11 1355699999 77777744  5899


Q ss_pred             EEEEecCCceee-eeccC-------C--ccceeeeeccC-CCeEEEecCCCcEEEEEcCCcceeeecc--ccCCceeEEE
Q 022303          174 ICIWRRNGLRSV-FPSRE-------G--TFMKGLCMRYF-DPEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLS  240 (299)
Q Consensus       174 i~v~d~~~~~~~-~~~~~-------~--~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~~~  240 (299)
                      |++|+....... +....       +  .....+++.++ +..+++...++.|++||..+++.+..+.  .+...+..++
T Consensus       168 I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~  247 (329)
T 3fvz_A          168 IVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS  247 (329)
T ss_dssp             EEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred             EEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence            999996544322 21111       0  11234678887 4556777788999999999888887774  4556788999


Q ss_pred             eCCC-------CeEEEEeCCCcEEEEeCCCCceEEEee---ccCCCCcEEEEEccCCCCeEEeee
Q 022303          241 LSED-------QLIISGSSLGSIAISGLSSDQRVATLR---STDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       241 ~~~~-------~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ++|+       +.+++...+..|++||+.+++.+..+.   .+..  .+.+++++|+|.++++.+
T Consensus       248 ~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~--~p~~ia~~~dG~lyvad~  310 (329)
T 3fvz_A          248 YIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD--MPHDIVASEDGTVYIGDA  310 (329)
T ss_dssp             EETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS--SEEEEEECTTSEEEEEES
T ss_pred             ecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC--CeeEEEECCCCCEEEEEC
Confidence            9994       222223345589999999999998884   3333  789999999996666653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.39  E-value=2.7e-10  Score=92.47  Aligned_cols=185  Identities=12%  Similarity=0.024  Sum_probs=126.7

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCC-----CceeEEEEecCCCEEEEE----c---
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-----NAASLVDFDFDESKIVGL----I---  170 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~----~---  170 (299)
                      .+.+..+...+.++.+ +++ ++++...++.|.+||..+++........     ..+..++++|+++++++.    .   
T Consensus        61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~  140 (296)
T 3e5z_A           61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKP  140 (296)
T ss_dssp             EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCG
T ss_pred             eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccc
Confidence            4455667778899999 666 5555556789999999888765433221     123348999999987742    1   


Q ss_pred             -----------CCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcC-Ccce---eeeccccCCc
Q 022303          171 -----------GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY-SRKC---SQIIRMHCAP  235 (299)
Q Consensus       171 -----------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~---~~~~~~~~~~  235 (299)
                                 .+.|+.++.......+..... ....+++++++..+++.+.++.|.+||+. +++.   ...+..+...
T Consensus       141 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~-~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~  219 (296)
T 3e5z_A          141 EEGYGGEMELPGRWVFRLAPDGTLSAPIRDRV-KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGK  219 (296)
T ss_dssp             GGSSCCCCCSSSCEEEEECTTSCEEEEECCCS-SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSC
T ss_pred             cccccccccCCCcEEEEECCCCCEEEeecCCC-CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCC
Confidence                       346777776533222222222 22356899999988778888999999986 4544   2233334556


Q ss_pred             eeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEc-cCCCCeEEeeec
Q 022303          236 VTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMY-PQFLHMLFFLCF  296 (299)
Q Consensus       236 i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~-s~~g~~l~s~s~  296 (299)
                      +..++++++ +++++.  ++.|.+||.. ++.+..+..+.   .+.+++| +|+++.|++++.
T Consensus       220 p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~---~~~~~~f~~~d~~~L~v~t~  276 (296)
T 3e5z_A          220 TDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQ---TTSNLCFGGPEGRTLYMTVS  276 (296)
T ss_dssp             CCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSS---CCCEEEEESTTSCEEEEEET
T ss_pred             CCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCC---CceeEEEECCCCCEEEEEcC
Confidence            778999998 655555  7889999986 88888887665   3788999 689988887764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.39  E-value=2.4e-11  Score=109.72  Aligned_cols=179  Identities=8%  Similarity=-0.043  Sum_probs=119.6

Q ss_pred             cccCeeEEEe-cCC-EEEEEeCC----------CcEEEEecCC------ceeEEEe-cCCCceeEEEEecCCCEEE-EEc
Q 022303          111 HSVGVDQCRM-KRG-LILTGVGD----------KVMRLWSLEG------YKCVEEY-SLPNAASLVDFDFDESKIV-GLI  170 (299)
Q Consensus       111 h~~~i~~~~~-~~~-~l~s~~~d----------g~i~iwd~~~------~~~~~~~-~~~~~~~~~~~~~~~~~l~-~~~  170 (299)
                      |...+..+.| +++ .|++++.+          ..|++||+.+      ++..... ..+.....++|+|||+.|+ ++.
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~  207 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAW  207 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEEC
Confidence            5667788888 677 88888776          5899999988      6654433 3344444589999999998 664


Q ss_pred             C--------CeEEEEecC-Cc---e-eee-eccCCccceeeeeccCCCeEEEecCCC--cEEEEEcCCcceeeeccccCC
Q 022303          171 G--------TRICIWRRN-GL---R-SVF-PSREGTFMKGLCMRYFDPEAVVGCEDG--TARVFDMYSRKCSQIIRMHCA  234 (299)
Q Consensus       171 d--------~~i~v~d~~-~~---~-~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~  234 (299)
                      +        ..|++||+. ++   . ..+ ..+... ....+|++++..+++++.++  .|.+||+.+++.......+..
T Consensus       208 ~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~-~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~  286 (662)
T 3azo_A          208 DHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEA-IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEE  286 (662)
T ss_dssp             CTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBC-EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSB
T ss_pred             CCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCce-EcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccc
Confidence            4        389999998 44   2 222 222222 23458999999777777788  566677666665443332222


Q ss_pred             c--------eeEEEeCCC-CeEEEEeCCCcEEEE--eCCCCceEEEeeccCCCCcEEEE-EccCCCCeEEee
Q 022303          235 P--------VTSLSLSED-QLIISGSSLGSIAIS--GLSSDQRVATLRSTDCTGHIICL-MYPQFLHMLFFL  294 (299)
Q Consensus       235 ~--------i~~~~~~~~-~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~i~~~-~~s~~g~~l~s~  294 (299)
                      .        +..++|+|+ +++++++. +.++||  |+.+++ +..+..+..  .+..+ +++.+.-+++++
T Consensus       287 ~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~--~~~~~~s~~~~~~~~~~~  354 (662)
T 3azo_A          287 FAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWT--EWAATLTVSGTRAVGVAA  354 (662)
T ss_dssp             SSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCC--EEEEEEEEETTEEEEEEE
T ss_pred             ccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCC--eEEEEEecCCCEEEEEEc
Confidence            2        467888888 88888888 999999  655454 677776655  67776 554333333333

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.38  E-value=2.6e-11  Score=109.51  Aligned_cols=185  Identities=9%  Similarity=-0.098  Sum_probs=125.9

Q ss_pred             eeccccCeeEEEecCC--EEEEE--eCCCcEEEEecCCceeEEEecCCC-cee---------EEEEe--cCCCE-EEEEc
Q 022303          108 WKAHSVGVDQCRMKRG--LILTG--VGDKVMRLWSLEGYKCVEEYSLPN-AAS---------LVDFD--FDESK-IVGLI  170 (299)
Q Consensus       108 ~~~h~~~i~~~~~~~~--~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~-~~~---------~~~~~--~~~~~-l~~~~  170 (299)
                      +.+|...+..+.+.++  ++++.  +.++...||....+.....+..+. .+.         ...|+  ||++. |+.+.
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~   98 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH   98 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEE
Confidence            3678889999999555  55555  558899999965444445555443 333         45555  99998 77443


Q ss_pred             --CCeEEEEecC--C-ce-eeeecc----CCccceeeeeccCCCeEEEecCC----------CcEEEEEcCC------cc
Q 022303          171 --GTRICIWRRN--G-LR-SVFPSR----EGTFMKGLCMRYFDPEAVVGCED----------GTARVFDMYS------RK  224 (299)
Q Consensus       171 --d~~i~v~d~~--~-~~-~~~~~~----~~~~~~~~~~~~~~~~l~s~~~d----------~~i~iwd~~~------~~  224 (299)
                        +..|+++++.  + +. ..+...    ........+|+|+++.|++++.+          ..|++||+.+      ++
T Consensus        99 ~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  178 (662)
T 3azo_A           99 FGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA  178 (662)
T ss_dssp             TTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG
T ss_pred             CCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc
Confidence              4678888876  2 32 333321    12223356899999998888766          5799999987      55


Q ss_pred             eeeecc-ccCCceeEEEeCCC-CeEEEEeCC--------CcEEEEeCC-CC---ceEEEeeccCCCCcEEEEEccCCCCe
Q 022303          225 CSQIIR-MHCAPVTSLSLSED-QLIISGSSL--------GSIAISGLS-SD---QRVATLRSTDCTGHIICLMYPQFLHM  290 (299)
Q Consensus       225 ~~~~~~-~~~~~i~~~~~~~~-~~l~~~~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~~~i~~~~~s~~g~~  290 (299)
                      . ..+. .+...+..++|+|| ++|+.++.+        ..|++||+. ++   +.......+..  .+..++|+|||++
T Consensus       179 ~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~--~~~~~~~spdg~l  255 (662)
T 3azo_A          179 V-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE--AIAQAEWAPDGSL  255 (662)
T ss_dssp             S-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB--CEEEEEECTTSCE
T ss_pred             e-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc--eEcceEECCCCeE
Confidence            4 3444 45567888999999 888877754        379999998 56   43333333344  7999999999997


Q ss_pred             EEeee
Q 022303          291 LFFLC  295 (299)
Q Consensus       291 l~s~s  295 (299)
                      +++++
T Consensus       256 ~~~~~  260 (662)
T 3azo_A          256 IVATD  260 (662)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            76664

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.38  E-value=1.1e-10  Score=97.77  Aligned_cols=169  Identities=11%  Similarity=0.082  Sum_probs=112.6

Q ss_pred             EEEEEeCC--CcEEEEec--CCceeEE--Eec--CCCceeEEEEecCCCEEE-EEcCCeEEEEecC-Cceee--eecc-C
Q 022303          124 LILTGVGD--KVMRLWSL--EGYKCVE--EYS--LPNAASLVDFDFDESKIV-GLIGTRICIWRRN-GLRSV--FPSR-E  190 (299)
Q Consensus       124 ~l~s~~~d--g~i~iwd~--~~~~~~~--~~~--~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~-~~~~~--~~~~-~  190 (299)
                      +++.|+..  +.|.+|++  .+++...  ...  ....+..++++|++++|+ ++.+ .|.+|++. +++..  .... .
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~   82 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence            35556653  56777764  5665432  222  223455699999999888 6666 99999986 55422  1111 1


Q ss_pred             CccceeeeeccCCCe--EEEec-------------CCCcEEEEEcC-Ccceeeecc----ccCCceeEEEeCCC-CeEEE
Q 022303          191 GTFMKGLCMRYFDPE--AVVGC-------------EDGTARVFDMY-SRKCSQIIR----MHCAPVTSLSLSED-QLIIS  249 (299)
Q Consensus       191 ~~~~~~~~~~~~~~~--l~s~~-------------~d~~i~iwd~~-~~~~~~~~~----~~~~~i~~~~~~~~-~~l~~  249 (299)
                      +.. ..+++++++..  +++++             .++.+.+|++. +++....+.    .+...+.+++|+|+ +++++
T Consensus        83 g~~-~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~  161 (365)
T 1jof_A           83 GHP-RANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS  161 (365)
T ss_dssp             SSG-GGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             CCC-ccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence            222 23588898885  44553             68999999997 465544333    24567899999999 77777


Q ss_pred             Ee-CCCcEEEEeCC-CCceE--EEeecc--CCCCcEEEEEccCCCCeEEeeec
Q 022303          250 GS-SLGSIAISGLS-SDQRV--ATLRST--DCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       250 ~~-~dg~i~iwd~~-~~~~~--~~~~~~--~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +. .++.|++||+. +++..  ..+...  ..  .+..++|+|+|++|++++.
T Consensus       162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~--~p~~~~~spdg~~l~v~~~  212 (365)
T 1jof_A          162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGD--HPRWVAMHPTGNYLYALME  212 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTC--CEEEEEECTTSSEEEEEET
T ss_pred             EcCCCCEEEEEEECCCCCEEEeeeEecCCCCC--CCCEeEECCCCCEEEEEEC
Confidence            65 46899999998 67653  334322  33  6899999999999887653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.35  E-value=1.2e-09  Score=87.73  Aligned_cols=186  Identities=9%  Similarity=-0.009  Sum_probs=134.7

Q ss_pred             eEEeeccc-cCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCC--ceeEEEEecCCCEEE-EEc-CCeEEEE
Q 022303          105 IDQWKAHS-VGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIV-GLI-GTRICIW  177 (299)
Q Consensus       105 ~~~~~~h~-~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~-~~~-d~~i~v~  177 (299)
                      +-.+..+. ..+.++.+ +++ +++  +.++.|..||. +++.+..+..+.  ....+.+.++++.++ .+. ++.+..+
T Consensus        28 ~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~v  104 (276)
T 3no2_A           28 VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEV  104 (276)
T ss_dssp             EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEE
T ss_pred             EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEE
Confidence            33444444 46777777 666 555  56788999999 899999998753  344588999999998 555 6788888


Q ss_pred             ecCCcee-eeeccC---Cc--cceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEE
Q 022303          178 RRNGLRS-VFPSRE---GT--FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG  250 (299)
Q Consensus       178 d~~~~~~-~~~~~~---~~--~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~  250 (299)
                      |...... .+....   ..  ....++..+++..+++...++.|..||.. |+.+.++... ..+.++...++ ++++++
T Consensus       105 d~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~  182 (276)
T 3no2_A          105 NMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVAC  182 (276)
T ss_dssp             CTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEEC
T ss_pred             eCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEe
Confidence            8754421 111111   11  11123567788889999999999999998 9999888654 44566777787 888888


Q ss_pred             eCCCcEEEEeCCCCceEEEeeccCC----CCcEEEEEccCCCCeEEeee
Q 022303          251 SSLGSIAISGLSSDQRVATLRSTDC----TGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       251 ~~dg~i~iwd~~~~~~~~~~~~~~~----~~~i~~~~~s~~g~~l~s~s  295 (299)
                      +.++.|..+|..+|+.+.++.....    ...+..++..++|..+++..
T Consensus       183 ~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          183 GDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             BTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             CCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            8888999999999999999875421    11478899999999888863

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.33  E-value=4.4e-10  Score=91.19  Aligned_cols=186  Identities=11%  Similarity=-0.043  Sum_probs=124.5

Q ss_pred             eeeEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCCCc-eeEEEEecCCCEEEEE-cCCeEEEE
Q 022303          103 IDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIVGL-IGTRICIW  177 (299)
Q Consensus       103 ~~~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~d~~i~v~  177 (299)
                      ..+..+..+.....++.| +++  +++++..++.|..||..++  ...+..+.. +..++++++++++++. .++.|.+|
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~   95 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQ   95 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence            334555666667778888 544  6888888999999999887  455554443 4559999999988755 46899999


Q ss_pred             ecCCceee-e-eccCCc---cceeeeeccCCCeEEE----ec-------------CCCcEEEEEcCCcceeeeccccCCc
Q 022303          178 RRNGLRSV-F-PSREGT---FMKGLCMRYFDPEAVV----GC-------------EDGTARVFDMYSRKCSQIIRMHCAP  235 (299)
Q Consensus       178 d~~~~~~~-~-~~~~~~---~~~~~~~~~~~~~l~s----~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~  235 (299)
                      |..+++.. + ....+.   ....+++.+++..+++    |.             ..+.|..++.. ++. ..+..+...
T Consensus        96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~  173 (296)
T 3e5z_A           96 REPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVK  173 (296)
T ss_dssp             CSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSS
T ss_pred             cCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCC
Confidence            99665422 2 111111   1123577888876665    32             13456666655 443 333355566


Q ss_pred             eeEEEeCCC-CeEEEEeCCCcEEEEeCC-CCce---EEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          236 VTSLSLSED-QLIISGSSLGSIAISGLS-SDQR---VATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       236 i~~~~~~~~-~~l~~~~~dg~i~iwd~~-~~~~---~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      +..++|+|+ +.+++.+.++.|.+||+. +++.   ...+..+..  .+.+++++++|+++++.
T Consensus       174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~--~p~~i~~d~~G~l~v~~  235 (296)
T 3e5z_A          174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG--KTDGLRVDAGGLIWASA  235 (296)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS--CCCSEEEBTTSCEEEEE
T ss_pred             CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC--CCCeEEECCCCCEEEEc
Confidence            889999999 777777888999999997 4554   333422222  67789999999877665

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.33  E-value=2.5e-12  Score=108.59  Aligned_cols=172  Identities=8%  Similarity=-0.122  Sum_probs=110.8

Q ss_pred             EEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-E-------------------EEEecCCCEEE-E-----E
Q 022303          118 CRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-L-------------------VDFDFDESKIV-G-----L  169 (299)
Q Consensus       118 ~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~-------------------~~~~~~~~~l~-~-----~  169 (299)
                      +.| +++ +|+.++.++.|.+||+.+++.......+.... .                   ..++|+++.++ .     .
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~  165 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN  165 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC
Confidence            566 666 89899999999999999888766555443211 1                   24567777665 3     3


Q ss_pred             cCCeEEEEecCCceee-eeccCCccceeeeecc-CCCeEEEecCC------CcEEEEEcCCcceeeecccc-CCceeEEE
Q 022303          170 IGTRICIWRRNGLRSV-FPSREGTFMKGLCMRY-FDPEAVVGCED------GTARVFDMYSRKCSQIIRMH-CAPVTSLS  240 (299)
Q Consensus       170 ~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~-~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~-~~~i~~~~  240 (299)
                      .+..|++||+.+++.. +...... .....|++ ++..++..+.+      ..|.+||+..++........ ...+..++
T Consensus       166 ~~~~l~~~d~~~g~~~~~~~~~~~-~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~  244 (396)
T 3c5m_A          166 PTCRLIKVDIETGELEVIHQDTAW-LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEF  244 (396)
T ss_dssp             CCEEEEEEETTTCCEEEEEEESSC-EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEE
T ss_pred             CcceEEEEECCCCcEEeeccCCcc-cccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceE
Confidence            5668999999876522 2222222 22457888 66666554433      46888998765543333211 23578899


Q ss_pred             eCCC-CeEEEEeCC-----CcEEEEeCCCCceEEEeeccCCCCcEEEEEccC-CCCeEEeee
Q 022303          241 LSED-QLIISGSSL-----GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQ-FLHMLFFLC  295 (299)
Q Consensus       241 ~~~~-~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~s~s  295 (299)
                      |+|+ +.|+.++.+     +.|++||+.+++...... ..   ... +.|+| +|+++++++
T Consensus       245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~---~~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP---PCS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC---SEE-EEEECSSSSEEEEEE
T ss_pred             ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC---CCC-CCccCCCCceEEEec
Confidence            9999 767666543     449999998887543322 22   233 89999 999888643

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.32  E-value=7.3e-10  Score=91.40  Aligned_cols=176  Identities=10%  Similarity=-0.013  Sum_probs=120.8

Q ss_pred             cCeeEEEe-cCCEEEEEe-CCCcEEEEecCCceeEEEecCCC------ceeEEEEecCCCEEEEE--cCCeEEEEecCCc
Q 022303          113 VGVDQCRM-KRGLILTGV-GDKVMRLWSLEGYKCVEEYSLPN------AASLVDFDFDESKIVGL--IGTRICIWRRNGL  182 (299)
Q Consensus       113 ~~i~~~~~-~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~--~d~~i~v~d~~~~  182 (299)
                      .....+.+ +++.++.+. .++.|.+||..+++....+....      ....+++ .+++.+++.  .++.|.++|..+.
T Consensus        84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~  162 (328)
T 3dsm_A           84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD  162 (328)
T ss_dssp             SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT
T ss_pred             CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC
Confidence            45677888 777555555 89999999999999888877554      4445777 344444454  4889999999987


Q ss_pred             eeeeeccCCccceeeeeccCCCeEEEecCC----------CcEEEEEcCCcceeeecccc-CCceeEEEeCCC-CeEEEE
Q 022303          183 RSVFPSREGTFMKGLCMRYFDPEAVVGCED----------GTARVFDMYSRKCSQIIRMH-CAPVTSLSLSED-QLIISG  250 (299)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~-~~l~~~  250 (299)
                      +.......+.....+++.+++..+++...+          +.|.++|..+++....+... ...+..++++|+ +.+.++
T Consensus       163 ~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~  242 (328)
T 3dsm_A          163 KVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI  242 (328)
T ss_dssp             EEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE
T ss_pred             eEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE
Confidence            643322222222345777877766665544          78999999998887666432 346899999998 777766


Q ss_pred             eCCCcEEEEeCCCCceEEE--eeccCCCCcEEEEEccCC-CCeEEe
Q 022303          251 SSLGSIAISGLSSDQRVAT--LRSTDCTGHIICLMYPQF-LHMLFF  293 (299)
Q Consensus       251 ~~dg~i~iwd~~~~~~~~~--~~~~~~~~~i~~~~~s~~-g~~l~s  293 (299)
                      ..  .|.+||..+++....  +.....  ...+++++|+ +..+++
T Consensus       243 ~~--~v~~~d~~t~~~~~~~~~~~~~~--~p~gi~vdp~~g~lyva  284 (328)
T 3dsm_A          243 NN--DIWRMPVEADRVPVRPFLEFRDT--KYYGLTVNPNNGEVYVA  284 (328)
T ss_dssp             SS--SEEEEETTCSSCCSSCSBCCCSS--CEEEEEECTTTCCEEEE
T ss_pred             cc--EEEEEECCCCceeeeeeecCCCC--ceEEEEEcCCCCeEEEE
Confidence            54  899999988875421  111122  6899999995 444444

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.30  E-value=1.7e-10  Score=96.48  Aligned_cols=98  Identities=9%  Similarity=0.005  Sum_probs=72.4

Q ss_pred             CCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EE----------cCCeEEEEecCCceee--eecc-----CC
Q 022303          130 GDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL----------IGTRICIWRRNGLRSV--FPSR-----EG  191 (299)
Q Consensus       130 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~----------~d~~i~v~d~~~~~~~--~~~~-----~~  191 (299)
                      .|+.|.+||..+++.+..+..+... .++++|++++++ +.          .++.|.+||..+.+..  +...     .+
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g  107 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL  107 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBC
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccC
Confidence            4789999999999999888877666 899999999988 54          2568999999876532  2221     11


Q ss_pred             ccceeeeeccCCCeEEEecC--CCcEEEEEcCCcceeee
Q 022303          192 TFMKGLCMRYFDPEAVVGCE--DGTARVFDMYSRKCSQI  228 (299)
Q Consensus       192 ~~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~  228 (299)
                      .....+++++++.+++++..  ++.|.+||+.+++.+..
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence            22334689999999887753  57899999877665544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.29  E-value=5.3e-11  Score=100.36  Aligned_cols=180  Identities=9%  Similarity=-0.058  Sum_probs=118.3

Q ss_pred             eeEEEe-cCC-EEEEEeC-C--CcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce--ee
Q 022303          115 VDQCRM-KRG-LILTGVG-D--KVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR--SV  185 (299)
Q Consensus       115 i~~~~~-~~~-~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~  185 (299)
                      +..+.| |++ +|+.... +  ..|.+||+.+++.......+..... ..|+|+++.|+ ++.++.|++||+.+++  .+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            566777 666 6665543 3  3788889998887655444444444 78999999998 8888899999998764  22


Q ss_pred             eeccCCccce---e---------------eeeccCCCeEEEe-----cCCCcEEEEEcCCcceeeeccccCCceeEEEeC
Q 022303          186 FPSREGTFMK---G---------------LCMRYFDPEAVVG-----CEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS  242 (299)
Q Consensus       186 ~~~~~~~~~~---~---------------~~~~~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  242 (299)
                      ...+.+....   +               ..++|++..++..     ..+..|.+||+.+++..... .+...+..+.|+
T Consensus       118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~s  196 (396)
T 3c5m_A          118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYR  196 (396)
T ss_dssp             EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEE
T ss_pred             EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceEC
Confidence            2222221110   0               2455666664433     45678999999987765544 456778999999


Q ss_pred             C-C-CeEEEEeCC------CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          243 E-D-QLIISGSSL------GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       243 ~-~-~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      | + +.|+..+.+      ..|.+||+..++. ..+..+.....+..++|+|+|++|+.++.
T Consensus       197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~  257 (396)
T 3c5m_A          197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWIPDGSAMAYVSY  257 (396)
T ss_dssp             TTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred             CCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEECCCCCEEEEEec
Confidence            9 6 656655543      4688999876543 33333221115888999999998877653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.28  E-value=3.9e-09  Score=82.53  Aligned_cols=191  Identities=13%  Similarity=0.068  Sum_probs=130.8

Q ss_pred             eEEeeccccC--eeEEEecCC-EEEEEeCCC--cEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCCeEEEE
Q 022303          105 IDQWKAHSVG--VDQCRMKRG-LILTGVGDK--VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIW  177 (299)
Q Consensus       105 ~~~~~~h~~~--i~~~~~~~~-~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~  177 (299)
                      ++++ .|...  ...+.|.++ +..+.+.+|  .|+++|+++++.+..+..........+.++++.|.  .-.++.+.+|
T Consensus        34 v~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~  112 (262)
T 3nol_A           34 VHSY-PHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVW  112 (262)
T ss_dssp             EEEE-ECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             EEEe-cCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence            4444 34333  356888767 666666666  99999999999999988766555543444566666  4448899999


Q ss_pred             ecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc--C---CceeEEEeCCCCeEEEEeC
Q 022303          178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH--C---APVTSLSLSEDQLIISGSS  252 (299)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~---~~i~~~~~~~~~~l~~~~~  252 (299)
                      |..+.+.+-.......  ...+++++..|+....++.|.++|..+.+.+..+...  .   ..++.+.+..++.++..-.
T Consensus       113 D~~t~~~~~ti~~~~e--G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~  190 (262)
T 3nol_A          113 NIRNLRQVRSFNYDGE--GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQ  190 (262)
T ss_dssp             ETTTCCEEEEEECSSC--CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETT
T ss_pred             ECccCcEEEEEECCCC--ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEcc
Confidence            9988763332222211  2356677888777777888999999999888777532  1   3345677764466666667


Q ss_pred             CCcEEEEeCCCCceEEEeeccC----------CCCcEEEEEccCCCCeE-Eeeeccc
Q 022303          253 LGSIAISGLSSDQRVATLRSTD----------CTGHIICLMYPQFLHML-FFLCFLP  298 (299)
Q Consensus       253 dg~i~iwd~~~~~~~~~~~~~~----------~~~~i~~~~~s~~g~~l-~s~s~~~  298 (299)
                      ++.|.+.|.++++.+..+....          .....+.+||+|+++.| ++|-.+|
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp  247 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP  247 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCC
Confidence            8899999999999998886531          01156999999976655 4554443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.26  E-value=2.2e-09  Score=85.67  Aligned_cols=180  Identities=6%  Similarity=-0.063  Sum_probs=119.2

Q ss_pred             cCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecC-C-CceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeec
Q 022303          113 VGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSL-P-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS  188 (299)
Q Consensus       113 ~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~  188 (299)
                      ..+.++++ +++.++.+..++.|.+||....... .+.. . ..+..+++++++++++ ...++.|.+|+..+.......
T Consensus        67 ~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~  145 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP  145 (270)
T ss_dssp             CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC
T ss_pred             CCcceeEECCCCCEEEEcCCCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec
Confidence            45677888 5554444444889999998765443 2322 2 3455699999998777 456789999987655432221


Q ss_pred             cCC-ccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCce
Q 022303          189 REG-TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQR  266 (299)
Q Consensus       189 ~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~  266 (299)
                      ... .....+++.+++..+++...++.|.+||............+...+..++++++ .++++...++.|.+||......
T Consensus       146 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          146 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred             cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence            111 12234677887776666667789999998866554333333366889999998 7777777789999999865543


Q ss_pred             EEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          267 VATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       267 ~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      .........  .+.+++++++|+++++.+
T Consensus       226 ~~~~~~~~~--~p~~i~~~~~g~l~v~~~  252 (270)
T 1rwi_B          226 TVLPFTGLN--TPLAVAVDSDRTVYVADR  252 (270)
T ss_dssp             EECCCCSCS--CEEEEEECTTCCEEEEEG
T ss_pred             eeeccCCCC--CceeEEECCCCCEEEEEC
Confidence            322212223  689999999998666654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.25  E-value=5.7e-09  Score=84.73  Aligned_cols=181  Identities=8%  Similarity=0.050  Sum_probs=121.0

Q ss_pred             cccCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCC-----CceeEEEEecCCCEEEEEc------------CC
Q 022303          111 HSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP-----NAASLVDFDFDESKIVGLI------------GT  172 (299)
Q Consensus       111 h~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~------------d~  172 (299)
                      ....+.++.+ +++.|+.+. ++.|.+||.++++........     .....+++++++++.+++.            .+
T Consensus        52 ~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~  130 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQG  130 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCE
T ss_pred             CCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCc
Confidence            3467888888 566444444 568999999888754433321     1233489999999777442            23


Q ss_pred             eEEEEecCCceeeeeccCCccceeeeeccCCCeE-EEecCCCcEEEEEc--CCcce-----eeeccccCCceeEEEeCCC
Q 022303          173 RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA-VVGCEDGTARVFDM--YSRKC-----SQIIRMHCAPVTSLSLSED  244 (299)
Q Consensus       173 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~--~~~~~-----~~~~~~~~~~i~~~~~~~~  244 (299)
                      .|+.++............ .....+++++++..+ ++.+.++.|.+||+  .++..     ...+..+...+..++++++
T Consensus       131 ~l~~~d~~g~~~~~~~~~-~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~  209 (297)
T 3g4e_A          131 ALYSLFPDHHVKKYFDQV-DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAE  209 (297)
T ss_dssp             EEEEECTTSCEEEEEEEE-SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTT
T ss_pred             EEEEEECCCCEEEEeecc-ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCC
Confidence            455555443322221111 122357899999875 55666789999987  44443     2223233456889999998


Q ss_pred             -CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEcc-CCCCeEEeee
Q 022303          245 -QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYP-QFLHMLFFLC  295 (299)
Q Consensus       245 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~s~s  295 (299)
                       ++.++...++.|..||..+++.+..+..+..  .+++++|. |+++.|+.++
T Consensus       210 G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~--~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          210 GKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD--KTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             SCEEEEEETTTEEEEECTTTCCEEEEEECSSS--BEEEEEEESGGGCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEcCCCceEEEEEECCCC--CceEEEEeCCCCCEEEEEc
Confidence             7777777788899999999999999987765  79999998 8888776554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.24  E-value=8.9e-10  Score=100.43  Aligned_cols=184  Identities=6%  Similarity=0.003  Sum_probs=119.4

Q ss_pred             cccCeeEEEe-cCC-EEEEEeCC-C----cEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCe---------
Q 022303          111 HSVGVDQCRM-KRG-LILTGVGD-K----VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTR---------  173 (299)
Q Consensus       111 h~~~i~~~~~-~~~-~l~s~~~d-g----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~---------  173 (299)
                      |+..+..+.| |++ +|+.++.+ |    .|++||+.+++.+.....+.....++|+||++.|+ ++.++.         
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~  202 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccccc
Confidence            4446777888 676 66655443 3    89999999998776433222234599999999988 776655         


Q ss_pred             -------EEEEecCCce----eeeeccC-CccceeeeeccCCCeEEEecC-----CCcEEEEEcCC------cc-eeeec
Q 022303          174 -------ICIWRRNGLR----SVFPSRE-GTFMKGLCMRYFDPEAVVGCE-----DGTARVFDMYS------RK-CSQII  229 (299)
Q Consensus       174 -------i~v~d~~~~~----~~~~~~~-~~~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~------~~-~~~~~  229 (299)
                             |++|++.++.    .++.... ........+++++.+|+..+.     +..|.+||+.+      +. ....+
T Consensus       203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l  282 (710)
T 2xdw_A          203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL  282 (710)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred             ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe
Confidence                   9999998765    2223221 111224689999999776543     56899999986      43 34455


Q ss_pred             cccCCceeEEEeCCC-CeEEEEeC----CCcEEEEeCCCCc--eEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          230 RMHCAPVTSLSLSED-QLIISGSS----LGSIAISGLSSDQ--RVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       230 ~~~~~~i~~~~~~~~-~~l~~~~~----dg~i~iwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ..+...+.. .|+|+ +.|+..+.    ++.|.+||+.+++  ....+..+.....+..++|++++.++++..
T Consensus       283 ~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~  354 (710)
T 2xdw_A          283 IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL  354 (710)
T ss_dssp             ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred             eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE
Confidence            555555544 36666 55555444    2369999998764  234454443311688899997777777654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.24  E-value=3.2e-09  Score=86.56  Aligned_cols=181  Identities=12%  Similarity=0.081  Sum_probs=120.5

Q ss_pred             cccCeeEEEe-cC-CEEEEEeCCCcEEEEecCCceeEEE-ecCC-----CceeEEEEecCCCEEEEE-cC----------
Q 022303          111 HSVGVDQCRM-KR-GLILTGVGDKVMRLWSLEGYKCVEE-YSLP-----NAASLVDFDFDESKIVGL-IG----------  171 (299)
Q Consensus       111 h~~~i~~~~~-~~-~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~l~~~-~d----------  171 (299)
                      +...+..+.+ ++ +.|..++.++.|.+||.. ++.... ....     ..+..+++++++++.++. .+          
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~  147 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS  147 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred             CCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccc
Confidence            4567888888 66 666666655689999988 765443 2211     124459999999887744 33          


Q ss_pred             -----CeEEEEecCCceeeeeccCCccceeeeec----cCCCeEE-EecCCCcEEEEEcC-Ccc-----eeeeccccC-C
Q 022303          172 -----TRICIWRRNGLRSVFPSREGTFMKGLCMR----YFDPEAV-VGCEDGTARVFDMY-SRK-----CSQIIRMHC-A  234 (299)
Q Consensus       172 -----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~-s~~~d~~i~iwd~~-~~~-----~~~~~~~~~-~  234 (299)
                           +.|..++.......+...... ...+++.    +++..++ +...++.|.+||.. +++     ....+..+. .
T Consensus       148 ~~~~~~~l~~~~~~g~~~~~~~~~~~-~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~  226 (314)
T 1pjx_A          148 MQEKFGSIYCFTTDGQMIQVDTAFQF-PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG  226 (314)
T ss_dssp             TSSSCEEEEEECTTSCEEEEEEEESS-EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred             ccCCCCeEEEECCCCCEEEeccCCCC-cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCC
Confidence                 577788766322222111111 2245677    7776654 44567899999986 343     222333333 5


Q ss_pred             ceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          235 PVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       235 ~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      .+..++++++ +++++...++.|.+||..+++.+..+..+..  .+.+++|+|+|+.|..++
T Consensus       227 ~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~--~~~~i~~~~dg~~l~v~~  286 (314)
T 1pjx_A          227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS--CEEEEEECTTSSEEEEEE
T ss_pred             CCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCC--CceeEEECCCCCEEEEEe
Confidence            6788999998 7777777888999999987887777766655  799999999999666554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.24  E-value=9.3e-09  Score=84.68  Aligned_cols=183  Identities=10%  Similarity=0.010  Sum_probs=120.2

Q ss_pred             ccccCeeEEEe-cCC-EEEEEeCC----CcEEEEecCCceeEEEec---CCCceeEEEEecCCCEEEEEc-------CCe
Q 022303          110 AHSVGVDQCRM-KRG-LILTGVGD----KVMRLWSLEGYKCVEEYS---LPNAASLVDFDFDESKIVGLI-------GTR  173 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~-~l~s~~~d----g~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-------d~~  173 (299)
                      .+...+.++.+ +++ ++++...+    +.|.+||..+++....+.   ....+..++++|+++++++..       .+.
T Consensus        84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~  163 (333)
T 2dg1_A           84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG  163 (333)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred             CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCce
Confidence            45677899998 566 55555555    689999998877653333   122344599999998877554       356


Q ss_pred             EEEEecCCcee-eeeccCCccceeeeeccCCCeE-EEecCCCcEEEEEcCC-cceeee--------ccccCCceeEEEeC
Q 022303          174 ICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPEA-VVGCEDGTARVFDMYS-RKCSQI--------IRMHCAPVTSLSLS  242 (299)
Q Consensus       174 i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~-~~~~~~--------~~~~~~~i~~~~~~  242 (299)
                      |+.+|..+.+. .+..... ....+++++++..+ ++...++.|.+||+.+ +..+..        +..+ ..+..++++
T Consensus       164 l~~~~~~~~~~~~~~~~~~-~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d  241 (333)
T 2dg1_A          164 VYYVSPDFRTVTPIIQNIS-VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCID  241 (333)
T ss_dssp             EEEECTTSCCEEEEEEEES-SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEB
T ss_pred             EEEEeCCCCEEEEeecCCC-cccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEEC
Confidence            77777665432 2211111 12346788888865 4555678999999863 332221        1111 367889999


Q ss_pred             CC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCC----CCcEEEEEccCCCCeEEeee
Q 022303          243 ED-QLIISGSSLGSIAISGLSSDQRVATLRSTDC----TGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       243 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ++ +++++...++.|.+||. +++.+..+..+..    ...+.+++|+|+++.|+.++
T Consensus       242 ~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~  298 (333)
T 2dg1_A          242 SDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  298 (333)
T ss_dssp             TTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             CCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEe
Confidence            98 77777777899999998 5777777754421    00478999999987776554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.24  E-value=9.9e-09  Score=84.52  Aligned_cols=186  Identities=9%  Similarity=0.045  Sum_probs=122.2

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEec-CCCceeEEEEecCCCEEEEEc-C----CeEEE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIVGLI-G----TRICI  176 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d----~~i~v  176 (299)
                      ...+..+...+.++.| +++ +++++..++.|.+||..+++...... ....+..++++++++++++.. +    +.|.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence            3445566677788888 556 66678889999999999887665443 334556699999999887544 4    58999


Q ss_pred             EecCCceee--eec-cCCccceeeeeccCCCeEEEecC------CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-Ce
Q 022303          177 WRRNGLRSV--FPS-REGTFMKGLCMRYFDPEAVVGCE------DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QL  246 (299)
Q Consensus       177 ~d~~~~~~~--~~~-~~~~~~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~  246 (299)
                      ||..+....  ... ........+++.+++..+++...      .+.|..+|..+++... +......+..++++|+ +.
T Consensus       117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~  195 (333)
T 2dg1_A          117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKV  195 (333)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSE
T ss_pred             EeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCE
Confidence            998876532  221 11222224577777766655543      3556667766544433 2233345789999998 64


Q ss_pred             E-EEEeCCCcEEEEeCCC-CceEEEe--------eccCCCCcEEEEEccCCCCeEEee
Q 022303          247 I-ISGSSLGSIAISGLSS-DQRVATL--------RSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       247 l-~~~~~dg~i~iwd~~~-~~~~~~~--------~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      + ++.+.++.|.+||+.+ ++.+..+        ..+ .  .+..++++++|+++++.
T Consensus       196 l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~--~~~~i~~d~~G~l~v~~  250 (333)
T 2dg1_A          196 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-E--GPDSCCIDSDDNLYVAM  250 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-S--EEEEEEEBTTCCEEEEE
T ss_pred             EEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-C--CCCceEECCCCCEEEEE
Confidence            4 5556688999999964 4333221        111 2  68889999999877765

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.23  E-value=1.4e-08  Score=78.81  Aligned_cols=191  Identities=12%  Similarity=0.040  Sum_probs=131.4

Q ss_pred             eEEeecccc--CeeEEEecCC-EEEEEeCCC--cEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCCeEEEE
Q 022303          105 IDQWKAHSV--GVDQCRMKRG-LILTGVGDK--VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIW  177 (299)
Q Consensus       105 ~~~~~~h~~--~i~~~~~~~~-~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~  177 (299)
                      +.++ .|..  -...+.|.++ +..+.+.+|  .|+.+|+.+++.+..+..+.......+...++.|.  .-.++.+.+|
T Consensus        12 ~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~   90 (243)
T 3mbr_X           12 VKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVY   90 (243)
T ss_dssp             EEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             EEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEE
Confidence            3444 4543  3557888777 555666654  89999999999999988776655433334455655  5558899999


Q ss_pred             ecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccC-----CceeEEEeCCCCeEEEEeC
Q 022303          178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-----APVTSLSLSEDQLIISGSS  252 (299)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~~~~~~l~~~~~  252 (299)
                      |..+.+.+-....+..  ...+.+++..|+.+..++.|.++|..+.+.+..+....     ..++.+.+..++.++..-.
T Consensus        91 D~~tl~~~~ti~~~~~--Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~  168 (243)
T 3mbr_X           91 DLATLTPRARFRYPGE--GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWL  168 (243)
T ss_dssp             ETTTTEEEEEEECSSC--CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETT
T ss_pred             ECCcCcEEEEEeCCCC--ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECC
Confidence            9998764332222221  23556777777777778999999999998887776321     3456777765566666657


Q ss_pred             CCcEEEEeCCCCceEEEeeccC-----------CCCcEEEEEccCCCC-eEEeeeccc
Q 022303          253 LGSIAISGLSSDQRVATLRSTD-----------CTGHIICLMYPQFLH-MLFFLCFLP  298 (299)
Q Consensus       253 dg~i~iwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~g~-~l~s~s~~~  298 (299)
                      +..|.+.|.++++.+..+....           .....+.++++|+++ ++++|-.+|
T Consensus       169 s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp  226 (243)
T 3mbr_X          169 TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWP  226 (243)
T ss_dssp             TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCS
T ss_pred             CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCC
Confidence            8899999999999998886321           112679999999655 555555443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.23  E-value=2.7e-09  Score=97.27  Aligned_cols=201  Identities=6%  Similarity=-0.070  Sum_probs=131.8

Q ss_pred             hhhhccccceeec-----Cce--eeEEeecc----------ccCeeEEEe-cCC-EEEEEeCCCc---------------
Q 022303           88 ELAMKHHRFALEE-----GRI--DIDQWKAH----------SVGVDQCRM-KRG-LILTGVGDKV---------------  133 (299)
Q Consensus        88 ~~~~~~~~~~l~~-----g~~--~~~~~~~h----------~~~i~~~~~-~~~-~l~s~~~dg~---------------  133 (299)
                      ...++|+++.++-     |..  .++.+.-.          ...+..+.| +++ .|+.++.++.               
T Consensus       129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~  208 (710)
T 2xdw_A          129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ  208 (710)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred             EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCC
Confidence            4577888877763     221  23333211          122455778 676 7888877766               


Q ss_pred             -EEEEecCCcee--EEEecC--CC-ceeEEEEecCCCEEE-EEc-----CCeEEEEecCC------c---eeeeeccCCc
Q 022303          134 -MRLWSLEGYKC--VEEYSL--PN-AASLVDFDFDESKIV-GLI-----GTRICIWRRNG------L---RSVFPSREGT  192 (299)
Q Consensus       134 -i~iwd~~~~~~--~~~~~~--~~-~~~~~~~~~~~~~l~-~~~-----d~~i~v~d~~~------~---~~~~~~~~~~  192 (299)
                       |++|++.+++.  ...+..  +. ....+.|+|++++|+ .+.     +..|++||+.+      +   ...+..+...
T Consensus       209 ~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~  288 (710)
T 2xdw_A          209 KLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG  288 (710)
T ss_dssp             EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS
T ss_pred             EEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCc
Confidence             99999988762  222332  22 345699999999988 554     56899999975      3   2333333332


Q ss_pred             cceeeeeccCCCeEEEecC----CCcEEEEEcCCcce--eeeccccCC--ceeEEEeCCC-CeEEEEeCCCc--EEEEeC
Q 022303          193 FMKGLCMRYFDPEAVVGCE----DGTARVFDMYSRKC--SQIIRMHCA--PVTSLSLSED-QLIISGSSLGS--IAISGL  261 (299)
Q Consensus       193 ~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~--~~~~~~~~~--~i~~~~~~~~-~~l~~~~~dg~--i~iwd~  261 (299)
                      ..  ..+.+++..++..+.    ...|.+||+.++..  ...+..+..  .+..++++++ .++++...|+.  |.+||+
T Consensus       289 ~~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~  366 (710)
T 2xdw_A          289 EY--DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL  366 (710)
T ss_dssp             CE--EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred             EE--EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence            22  247778888665443    33699999987642  234434433  6888999866 77888888874  667788


Q ss_pred             CCCceEEEeeccCCCCcEEEEEccCCCCeEE
Q 022303          262 SSDQRVATLRSTDCTGHIICLMYPQFLHMLF  292 (299)
Q Consensus       262 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  292 (299)
                      .+++.+..+..+..  .+..++++|+++.++
T Consensus       367 ~~g~~~~~l~~~~~--~v~~~~~s~d~~~l~  395 (710)
T 2xdw_A          367 ATGALLKIFPLEVG--SVVGYSGQKKDTEIF  395 (710)
T ss_dssp             TTCCEEEEECCCSS--EEEEEECCTTCSEEE
T ss_pred             CCCCEEEecCCCCc--eEEEEecCCCCCEEE
Confidence            77888888877755  899999999987665

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.20  E-value=8.2e-09  Score=81.60  Aligned_cols=180  Identities=8%  Similarity=-0.040  Sum_probs=124.2

Q ss_pred             eeEEEe-cCCEEEEEe-C--CCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCCeEEEEecCCceeeeec
Q 022303          115 VDQCRM-KRGLILTGV-G--DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPS  188 (299)
Q Consensus       115 i~~~~~-~~~~l~s~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~  188 (299)
                      ...+.+ +++.|+.++ .  ++.|.+.|..+++.+..+..........+..+++.++  .-.++.+.++|..+.+.+-..
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i  102 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNF  102 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence            567888 446444443 2  5899999999999999887554333333333455665  445789999999987643332


Q ss_pred             cCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccC-----CceeEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 022303          189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-----APVTSLSLSEDQLIISGSSLGSIAISGLSS  263 (299)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~  263 (299)
                      ..+ ......+.+++..++.+..++.|.++|..+.+.+..+....     ..++.+.+..+..++....++.|.+.|..+
T Consensus       103 ~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~t  181 (266)
T 2iwa_A          103 THQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKD  181 (266)
T ss_dssp             ECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred             ECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCC
Confidence            222 11124577788887777788999999999988887776321     136778887436566666789999999999


Q ss_pred             CceEEEeeccC-----------CCCcEEEEEccCCCCeEEeee
Q 022303          264 DQRVATLRSTD-----------CTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       264 ~~~~~~~~~~~-----------~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ++.+.++....           .....+.++|+|+++.|++++
T Consensus       182 g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg  224 (266)
T 2iwa_A          182 GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG  224 (266)
T ss_dssp             CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred             CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence            99999886431           001568999999987666554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.20  E-value=6.3e-09  Score=81.38  Aligned_cols=181  Identities=8%  Similarity=0.012  Sum_probs=128.1

Q ss_pred             eeEEEecCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCCeEEEEecCCceeeeeccCC
Q 022303          115 VDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREG  191 (299)
Q Consensus       115 i~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~~  191 (299)
                      ...+.|.++ +.++.+.+|.|+++|+++++.+..+ .+.........++++.|.  .-.++.+.+||..+.+.+-.....
T Consensus        57 tqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~  135 (268)
T 3nok_A           57 TQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS  135 (268)
T ss_dssp             EEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS
T ss_pred             cceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC
Confidence            356888777 7778888899999999999998887 555444433344555555  445889999999987643322222


Q ss_pred             ccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc--C---CceeEEEeCCCCeEEEEeCCCcEEEEeCCCCce
Q 022303          192 TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH--C---APVTSLSLSEDQLIISGSSLGSIAISGLSSDQR  266 (299)
Q Consensus       192 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~---~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  266 (299)
                      ..  ...+.+++..|+.+..++.|.++|..+.+.+..+...  .   ..++.+.|..++.++....++.|.+.|.++++.
T Consensus       136 ~e--GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V  213 (268)
T 3nok_A          136 GE--GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTV  213 (268)
T ss_dssp             SC--CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBE
T ss_pred             Cc--eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcE
Confidence            11  2355677888887777999999999999888877632  1   245677777556666666788999999999999


Q ss_pred             EEEeecc-----------CCCCcEEEEEccCCC-CeEEeeeccc
Q 022303          267 VATLRST-----------DCTGHIICLMYPQFL-HMLFFLCFLP  298 (299)
Q Consensus       267 ~~~~~~~-----------~~~~~i~~~~~s~~g-~~l~s~s~~~  298 (299)
                      +..+...           ......+.+|++|++ +++++|-++|
T Consensus       214 ~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp  257 (268)
T 3nok_A          214 VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWP  257 (268)
T ss_dssp             EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCS
T ss_pred             EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCC
Confidence            9888643           111267999999965 5666665554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.20  E-value=3.9e-09  Score=84.14  Aligned_cols=179  Identities=6%  Similarity=-0.077  Sum_probs=115.3

Q ss_pred             CeeEEEe-cCC-EEE-EEeCCCcEEEEecCCceeEEEecCC-CceeEEEEecCCCEEEEEcCCeEEEEecCCceeeeec-
Q 022303          114 GVDQCRM-KRG-LIL-TGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS-  188 (299)
Q Consensus       114 ~i~~~~~-~~~-~l~-s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~-  188 (299)
                      ...++.+ +++ +++ +...++.|.+||..+.........+ ..+..++++++++++++..++.|.+||..+....... 
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~  104 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF  104 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeec
Confidence            5567777 555 455 4467899999997665433221122 3455599999998766655889999998876432211 


Q ss_pred             cCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceE
Q 022303          189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV  267 (299)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~  267 (299)
                      ........+++.+++..+++...++.|.+|+..+.............+..++++++ +++++...++.|.+||.......
T Consensus       105 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~  184 (270)
T 1rwi_B          105 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV  184 (270)
T ss_dssp             CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred             CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE
Confidence            11122334677777776666667889999987654433322233346788999998 87777777889999998766544


Q ss_pred             EEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          268 ATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       268 ~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      ........  .+.+++++++|.++++.
T Consensus       185 ~~~~~~~~--~p~~i~~d~~g~l~v~~  209 (270)
T 1rwi_B          185 VLPFTDIT--APWGIAVDEAGTVYVTE  209 (270)
T ss_dssp             ECCCSSCC--SEEEEEECTTCCEEEEE
T ss_pred             eecccCCC--CceEEEECCCCCEEEEE
Confidence            33222223  78999999999766654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.18  E-value=2.9e-08  Score=81.72  Aligned_cols=178  Identities=8%  Similarity=-0.036  Sum_probs=116.6

Q ss_pred             ccCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCC-----CceeEEEEecCCCEEEEEc-------CCeEEEEe
Q 022303          112 SVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP-----NAASLVDFDFDESKIVGLI-------GTRICIWR  178 (299)
Q Consensus       112 ~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~-------d~~i~v~d  178 (299)
                      ...+.++.+ +++.++.++.+ .|.+||..+++........     ..+..+.+++++++.+++.       .+.|+.++
T Consensus        89 ~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~  167 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA  167 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence            457888888 67744445544 4999999888754433221     1233489999999777543       25677777


Q ss_pred             cCCceeeeeccCCccceeeeeccCCCeEE-EecCCCcEEEEEcC--Cc-ce-----eeeccccCCceeEEEeCCC-CeEE
Q 022303          179 RNGLRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMY--SR-KC-----SQIIRMHCAPVTSLSLSED-QLII  248 (299)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~--~~-~~-----~~~~~~~~~~i~~~~~~~~-~~l~  248 (299)
                       ......+.... .....+++++++..++ +...++.|.+||+.  ++ +.     ...+......+..++++++ .+++
T Consensus       168 -~g~~~~~~~~~-~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwv  245 (326)
T 2ghs_A          168 -KGKVTKLFADI-SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN  245 (326)
T ss_dssp             -TTEEEEEEEEE-SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred             -CCcEEEeeCCC-cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEE
Confidence             32222221111 1223568889988754 45567899999986  55 32     2222223456788999988 7666


Q ss_pred             EEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEcc-CCCCeEEeee
Q 022303          249 SGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYP-QFLHMLFFLC  295 (299)
Q Consensus       249 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~s~s  295 (299)
                      +...++.|..||. +++.+..+..+..  .+++++|+ |+++.|+.++
T Consensus       246 a~~~~~~v~~~d~-~g~~~~~i~~~~~--~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          246 ARWGEGAVDRYDT-DGNHIARYEVPGK--QTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             EEETTTEEEEECT-TCCEEEEEECSCS--BEEEEEEESTTSCEEEEEE
T ss_pred             EEeCCCEEEEECC-CCCEEEEEECCCC--CcEEEEEecCCCCEEEEEe
Confidence            6666788999998 6888888876665  79999998 8888776554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.16  E-value=8.8e-09  Score=85.26  Aligned_cols=164  Identities=10%  Similarity=0.067  Sum_probs=108.8

Q ss_pred             eeEEEe-cCC-EEEEEeC---------------------------CCcEEEEecCCceeEEEecCCCceeEEEEecCCCE
Q 022303          115 VDQCRM-KRG-LILTGVG---------------------------DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK  165 (299)
Q Consensus       115 i~~~~~-~~~-~l~s~~~---------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (299)
                      +..+.| |++ .|+.++.                           ...|.+||+.+++.+..+... .+..+.|+|++ +
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~  183 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-I  183 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-E
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-E
Confidence            888888 676 6666653                           257999999988874444433 55569999999 6


Q ss_pred             EE-EEcC---------CeEEEEecCCce-eeeeccCCccceeeeeccCCCeEEEecCC--------CcEEEEEcCCccee
Q 022303          166 IV-GLIG---------TRICIWRRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGCED--------GTARVFDMYSRKCS  226 (299)
Q Consensus       166 l~-~~~d---------~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~  226 (299)
                      ++ +..+         ..|+++|  ++. ..+... ..   ...++|++..++.++.+        ..|.+||  +++..
T Consensus       184 ~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~---~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~  255 (347)
T 2gop_A          184 VVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VS---FYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM  255 (347)
T ss_dssp             EEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ES---EEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE
T ss_pred             EEEEecccccccccccccEEEeC--CCceEEeccC-cc---eeeECCCCCEEEEEEccccCCccccceEEEEC--CCceE
Confidence            66 4433         2456666  332 222222 22   23448889887766543        3688888  56555


Q ss_pred             eeccccCCceeE-EEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          227 QIIRMHCAPVTS-LSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       227 ~~~~~~~~~i~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      .....+...+.. +.|+ +.++++++.++.+++| +.+++..... .+..  .|.+++|+|  .++++++
T Consensus       256 ~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~--~v~~~~~s~--~~~~~~~  318 (347)
T 2gop_A          256 GILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGEIKPIA-KGRH--WIMGFDVDE--IVVYLKE  318 (347)
T ss_dssp             ESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSSEEEEE-CSSS--EEEEEEESS--SEEEEEE
T ss_pred             eccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCceEEEe-cCCC--eEEeeeeeC--cEEEEEc
Confidence            444455677886 8998 6678888899999999 8766654433 3444  899999999  5555554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.15  E-value=3.7e-09  Score=87.53  Aligned_cols=169  Identities=12%  Similarity=0.018  Sum_probs=107.8

Q ss_pred             cCeeEEEe-cCC-EEEEEeCC---C--cEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcC-------------
Q 022303          113 VGVDQCRM-KRG-LILTGVGD---K--VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG-------------  171 (299)
Q Consensus       113 ~~i~~~~~-~~~-~l~s~~~d---g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d-------------  171 (299)
                      ..+..+.| |++ +|+..+.+   +  .|.+|++.+++.......+. +..+.|+|+++.|+ ++.+             
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            45677888 677 77766643   3  48888888888766655554 55699999999888 5532             


Q ss_pred             --------------CeEEEEecCCcee--eeeccCCccceeeeeccCCCeEEEecCCC-------cEEEEEcCCcceeee
Q 022303          172 --------------TRICIWRRNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDG-------TARVFDMYSRKCSQI  228 (299)
Q Consensus       172 --------------~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-------~i~iwd~~~~~~~~~  228 (299)
                                    ..|++||+.+++.  .+.. .  .....+|++++ .++++..++       ...+|.+.+++. ..
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~--~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~  212 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P--RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EK  212 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEEEEEEE-E--TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EE
T ss_pred             ceeecCcccccCccceEEEEECCCCeEEeeecC-C--CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EE
Confidence                          5799999987753  2332 2  23346888988 766665432       344554444443 33


Q ss_pred             ccccCCceeEEEeCCC-CeEEEEeCC--------CcEEEEeCCCCceEEEeeccCCCCcEEE-EEccCCCCeEEeeec
Q 022303          229 IRMHCAPVTSLSLSED-QLIISGSSL--------GSIAISGLSSDQRVATLRSTDCTGHIIC-LMYPQFLHMLFFLCF  296 (299)
Q Consensus       229 ~~~~~~~i~~~~~~~~-~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~i~~-~~~s~~g~~l~s~s~  296 (299)
                      +..+ ..+..+  +|+ +.|+.++.+        ..|.+||  +++.......+..  .+.. +.|+ +| ++++++.
T Consensus       213 l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~--~~~~~~~~s-dg-~~~~~~~  281 (347)
T 2gop_A          213 MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR--GVGQAKIKD-GK-VYFTLFE  281 (347)
T ss_dssp             EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS--EEEEEEEET-TE-EEEEEEE
T ss_pred             eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc--ccCCccEEc-Cc-EEEEEec
Confidence            3334 445544  888 777776644        3688888  5654433334444  7886 8999 88 7776653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.13  E-value=2.3e-09  Score=97.52  Aligned_cols=183  Identities=8%  Similarity=-0.027  Sum_probs=115.1

Q ss_pred             ccccCeeEEEe-cCC-EEE-----EEeCCCcEEEEecCCceeE-EEecCCCceeEEEEecCCCEEE-EEcCCe-------
Q 022303          110 AHSVGVDQCRM-KRG-LIL-----TGVGDKVMRLWSLEGYKCV-EEYSLPNAASLVDFDFDESKIV-GLIGTR-------  173 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~-~l~-----s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~-~~~d~~-------  173 (299)
                      +|...+..+.| |++ +|+     .|+.+..|++||+.+++.+ ...........++|+||++.|+ ++.+..       
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            45556888888 677 666     3444578999999998864 2111111114599999999988 777665       


Q ss_pred             ------EEEEecCCce----eeeeccCC-ccceeeeeccCCCeEEEecCCC----cEEEEEcCCcceeeeccccCCceeE
Q 022303          174 ------ICIWRRNGLR----SVFPSREG-TFMKGLCMRYFDPEAVVGCEDG----TARVFDMYSRKCSQIIRMHCAPVTS  238 (299)
Q Consensus       174 ------i~v~d~~~~~----~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~i~~  238 (299)
                            |++|++.++.    .++..... .......+++++.+++..+.++    .|.++|..+++. ..+..+...+..
T Consensus       198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~  276 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYE  276 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEE
T ss_pred             CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEE
Confidence                  9999998765    23332222 1223468999999987766555    677777655543 334444555555


Q ss_pred             EEeCCCCeEEEEeC----CCcEEEEeCCCCce--EEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          239 LSLSEDQLIISGSS----LGSIAISGLSSDQR--VATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       239 ~~~~~~~~l~~~~~----dg~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ..+.+++ ++..+.    ++.|.+||+.+++.  ...+..+.....+..++|+ ++.++++..
T Consensus       277 ~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~  337 (695)
T 2bkl_A          277 VHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL  337 (695)
T ss_dssp             EEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE
T ss_pred             EEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE
Confidence            5564337 444443    57899999987653  2344333211168888888 666666654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.13  E-value=1.1e-07  Score=76.55  Aligned_cols=181  Identities=9%  Similarity=0.010  Sum_probs=120.0

Q ss_pred             eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEe-c-CCCceeEEEEecCCCEEEEEc-CCeEEEEecCCce
Q 022303          109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEY-S-LPNAASLVDFDFDESKIVGLI-GTRICIWRRNGLR  183 (299)
Q Consensus       109 ~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~-d~~i~v~d~~~~~  183 (299)
                      ..+...+.++.+ +++ ++++...++.|.+||.. ++..... . ....+..+++++++.+.++.. ++.|..||.....
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~   89 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGII   89 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred             CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcE
Confidence            455567889988 566 44444457899999988 5543322 2 223455699999998877544 7899999987443


Q ss_pred             eeeecc-CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeee-ccccCCceeEEEeCCC-CeEEEEeCCCcEEEEe
Q 022303          184 SVFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSED-QLIISGSSLGSIAISG  260 (299)
Q Consensus       184 ~~~~~~-~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd  260 (299)
                      ..+... .......+++.+++..+++...++.|..||. +++.... .......+..++++++ .++++...++.|..||
T Consensus        90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~  168 (299)
T 2z2n_A           90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRIT  168 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEc
Confidence            333321 1222334566676666666667889999998 5554322 2233456899999988 7777777788999999


Q ss_pred             CCCCceEEE-eeccCCCCcEEEEEccCCCCeEEee
Q 022303          261 LSSDQRVAT-LRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       261 ~~~~~~~~~-~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      . +++.... ......  .+.+++++++|+++++.
T Consensus       169 ~-~g~~~~~~~~~~~~--~~~~i~~~~~g~l~v~~  200 (299)
T 2z2n_A          169 E-SGDITEFKIPTPAS--GPVGITKGNDDALWFVE  200 (299)
T ss_dssp             T-TCCEEEEECSSTTC--CEEEEEECTTSSEEEEE
T ss_pred             C-CCcEEEeeCCCCCC--cceeEEECCCCCEEEEc
Confidence            9 6765432 222222  68999999999876654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.10  E-value=7.6e-09  Score=94.06  Aligned_cols=201  Identities=10%  Similarity=-0.043  Sum_probs=127.6

Q ss_pred             hhhhccccceee-----cCc--eeeEEeec---------cccCe--eEEEe-cCC-EEEEEeCCCc-------------E
Q 022303           88 ELAMKHHRFALE-----EGR--IDIDQWKA---------HSVGV--DQCRM-KRG-LILTGVGDKV-------------M  134 (299)
Q Consensus        88 ~~~~~~~~~~l~-----~g~--~~~~~~~~---------h~~~i--~~~~~-~~~-~l~s~~~dg~-------------i  134 (299)
                      ...++|+++.++     .|.  ..++.+.-         +...+  ..+.| +++ .|+.++.|..             |
T Consensus       125 ~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v  204 (695)
T 2bkl_A          125 TWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTI  204 (695)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEE
T ss_pred             EEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEE
Confidence            557889998887     554  23444321         22222  45778 666 8888888776             9


Q ss_pred             EEEecCCcee--EEEec--CC-CceeEEEEecCCCEEE-EEcCC----eEEEEecCCce-eeeeccCCccceeeeeccCC
Q 022303          135 RLWSLEGYKC--VEEYS--LP-NAASLVDFDFDESKIV-GLIGT----RICIWRRNGLR-SVFPSREGTFMKGLCMRYFD  203 (299)
Q Consensus       135 ~iwd~~~~~~--~~~~~--~~-~~~~~~~~~~~~~~l~-~~~d~----~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~  203 (299)
                      ++|++.+++.  ...+.  .+ .....+.|+|+|++|+ ++.++    .|++++..+.. ..+..+....... .+ +++
T Consensus       205 ~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~-~~-~~g  282 (695)
T 2bkl_A          205 RYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEV-HA-WKD  282 (695)
T ss_dssp             EEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEE-EE-ETT
T ss_pred             EEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEE-Ee-cCC
Confidence            9999988762  22333  33 2455699999999988 66555    77777765443 2333333322222 23 455


Q ss_pred             CeEEEecC----CCcEEEEEcCCcce--eeeccc-c-CCceeEEEeCCCCeEEEEeCCCcEEEEeCC-CCceEEEeeccC
Q 022303          204 PEAVVGCE----DGTARVFDMYSRKC--SQIIRM-H-CAPVTSLSLSEDQLIISGSSLGSIAISGLS-SDQRVATLRSTD  274 (299)
Q Consensus       204 ~~l~s~~~----d~~i~iwd~~~~~~--~~~~~~-~-~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~  274 (299)
                      . ++..+.    ++.|.+||+.+++.  ...+.. + ...+..++++.+.++++...|+..++|.+. +++.+..+..+.
T Consensus       283 ~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~  361 (695)
T 2bkl_A          283 R-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLPG  361 (695)
T ss_dssp             E-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCSS
T ss_pred             c-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCCC
Confidence            5 444332    57899999987653  223322 2 456788888855888889999988887654 466666666542


Q ss_pred             CCCcEEEEEccCCCCeEE
Q 022303          275 CTGHIICLMYPQFLHMLF  292 (299)
Q Consensus       275 ~~~~i~~~~~s~~g~~l~  292 (299)
                      .. .+..++++|+++.|+
T Consensus       362 ~~-~v~~~~~s~d~~~l~  378 (695)
T 2bkl_A          362 VG-AASNLMGLEDLDDAY  378 (695)
T ss_dssp             SS-EECCCBSCTTCSEEE
T ss_pred             Ce-EEEEeecCCCCCEEE
Confidence            22 788899999987666

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.09  E-value=6.6e-08  Score=85.32  Aligned_cols=158  Identities=13%  Similarity=0.118  Sum_probs=112.4

Q ss_pred             CeeEEEe-cCC-EEEEEeCCCcEEEEecC--CceeEEEecCCCceeEEEEe----cCCCEEE--EEcCCeEEEEecCCce
Q 022303          114 GVDQCRM-KRG-LILTGVGDKVMRLWSLE--GYKCVEEYSLPNAASLVDFD----FDESKIV--GLIGTRICIWRRNGLR  183 (299)
Q Consensus       114 ~i~~~~~-~~~-~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~----~~~~~l~--~~~d~~i~v~d~~~~~  183 (299)
                      .+..+.+ +++ ++++++.|+.|.+||+.  +++.+..+........++|+    |++++++  ...++++.++|..+.+
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~  277 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE  277 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence            4456777 666 88889999999999995  88888888877677779999    6999887  4556899999988765


Q ss_pred             eeeeccC------------CccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceee--eccccCCceeEEEeCCC-CeE
Q 022303          184 SVFPSRE------------GTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSED-QLI  247 (299)
Q Consensus       184 ~~~~~~~------------~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~-~~l  247 (299)
                      .+.....            ......+..++.++. ++....+|.|.++|..+.+.+.  .+ ........+.|+|+ +++
T Consensus       278 ~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~  356 (567)
T 1qks_A          278 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYF  356 (567)
T ss_dssp             EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEE
T ss_pred             EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEE
Confidence            3221110            111112344555555 5566778999999987654322  22 23445778899999 766


Q ss_pred             EEE-eCCCcEEEEeCCCCceEEEeec
Q 022303          248 ISG-SSLGSIAISGLSSDQRVATLRS  272 (299)
Q Consensus       248 ~~~-~~dg~i~iwd~~~~~~~~~~~~  272 (299)
                      +++ ..++.|.++|+.+++.+..+..
T Consensus       357 ~va~~~sn~V~ViD~~t~kl~~~i~v  382 (567)
T 1qks_A          357 ITAANARNKLVVIDTKEGKLVAIEDT  382 (567)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             EEEeCCCCeEEEEECCCCcEEEEEec
Confidence            554 4688999999999998877765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.08  E-value=1.2e-07  Score=80.55  Aligned_cols=179  Identities=7%  Similarity=-0.054  Sum_probs=117.3

Q ss_pred             CeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCC--eEEEEecCCcee--ee
Q 022303          114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGT--RICIWRRNGLRS--VF  186 (299)
Q Consensus       114 ~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~--~i~v~d~~~~~~--~~  186 (299)
                      ....+++ +++ ++++...++.|++||..+++............ ++++++++.|+ +..++  .|.+++..+...  ..
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~  210 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI  210 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence            4567788 566 56666667899999999888766655544444 99999999887 65545  899998875532  22


Q ss_pred             ---eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeee----ccccCCce--eEEEeCCC--CeEEEEeCCCc
Q 022303          187 ---PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI----IRMHCAPV--TSLSLSED--QLIISGSSLGS  255 (299)
Q Consensus       187 ---~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~i--~~~~~~~~--~~l~~~~~dg~  255 (299)
                         ..........+++++.+..|+.+..++.|..||..++.....    .......-  ..++|+|+  .++++-..++.
T Consensus       211 g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~  290 (409)
T 3hrp_A          211 GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSS  290 (409)
T ss_dssp             EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTE
T ss_pred             eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCE
Confidence               010122223467888666666677788999999987653222    11222222  39999994  56666667889


Q ss_pred             EEEEeCCCCceEEEeeccC---C----------CCcEEEEEccCCCCeEEeee
Q 022303          256 IAISGLSSDQRVATLRSTD---C----------TGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       256 i~iwd~~~~~~~~~~~~~~---~----------~~~i~~~~~s~~g~~l~s~s  295 (299)
                      |+.|+.. ++ +..+.+..   .          ......++++|+|+++++-+
T Consensus       291 I~~~~~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~  341 (409)
T 3hrp_A          291 VYKITPD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG  341 (409)
T ss_dssp             EEEECTT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred             EEEEecC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence            9999975 43 33333322   0          11588999999999666643

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.04  E-value=6.3e-07  Score=72.13  Aligned_cols=179  Identities=10%  Similarity=0.023  Sum_probs=117.0

Q ss_pred             cccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEec---CCCceeEEEEecCCCEEEE-EcCCeEEEEecCCcee
Q 022303          111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS---LPNAASLVDFDFDESKIVG-LIGTRICIWRRNGLRS  184 (299)
Q Consensus       111 h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~  184 (299)
                      +...+..+.+ +++ ++++...++.|..||.. ++. ..+.   ....+..+++++++++.++ ..++.|..||......
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~  132 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIR  132 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEE
Confidence            4466888888 556 55555557889999976 432 2232   2234555899999988774 4578999999843333


Q ss_pred             eeecc-CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeee-ccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeC
Q 022303          185 VFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGL  261 (299)
Q Consensus       185 ~~~~~-~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~  261 (299)
                      .+... .......+++.+++..+++...++.|..||. +++.... .......+..++++++ .++++...++.|.+||.
T Consensus       133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          133 EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence            22221 1222334567777766666666789999998 6665432 2233456889999998 77766667889999999


Q ss_pred             CCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          262 SSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       262 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                       +++... +........+.+++++++|+++++.
T Consensus       212 -~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~  242 (299)
T 2z2n_A          212 -SGEITE-FKIPTPNARPHAITAGAGIDLWFTE  242 (299)
T ss_dssp             -TCCEEE-EECSSTTCCEEEEEECSTTCEEEEE
T ss_pred             -CCcEEE-EECCCCCCCceeEEECCCCCEEEec
Confidence             676433 3222111278999999999866653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.03  E-value=9.7e-11  Score=98.27  Aligned_cols=146  Identities=12%  Similarity=0.020  Sum_probs=82.0

Q ss_pred             cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCC--ccceee
Q 022303          121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREG--TFMKGL  197 (299)
Q Consensus       121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~--~~~~~~  197 (299)
                      .++.+++++.||.|+.||..+|+.+..+.. ..+....+..++..++ ++.|+.++.||..+++........  ......
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            456899999999999999999999988877 4444444456676666 678999999999876543222111  100000


Q ss_pred             eeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEee
Q 022303          198 CMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLR  271 (299)
Q Consensus       198 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~  271 (299)
                      .....+..+++++.++.++.||..+|+.+..+..+..    ..++|+ ..+++++.|+.|+.||.++|+.+..+.
T Consensus        87 p~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A           87 PCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             SCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             ceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence            0111345577888899999999999999887764431    334566 788899999999999999998776654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.02  E-value=3.5e-07  Score=76.62  Aligned_cols=171  Identities=11%  Similarity=0.012  Sum_probs=104.8

Q ss_pred             EEEe-cCC-EEEEEe----------CCCcEEEEecCCceeEEEecCC--------CceeEEEEecCCCEEE-EEc--CCe
Q 022303          117 QCRM-KRG-LILTGV----------GDKVMRLWSLEGYKCVEEYSLP--------NAASLVDFDFDESKIV-GLI--GTR  173 (299)
Q Consensus       117 ~~~~-~~~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~-~~~--d~~  173 (299)
                      .+.+ +++ .++.+.          .++.|.+||..+++.+..+...        .....+.++|++++|+ +..  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            6677 666 666654          3678999999999988877643        2234589999999988 553  478


Q ss_pred             EEEEecCCceeeee-ccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCccee-------------------------
Q 022303          174 ICIWRRNGLRSVFP-SREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCS-------------------------  226 (299)
Q Consensus       174 i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~-------------------------  226 (299)
                      |.++| .+.+.... .....   +..+.+.++. +++.+.||.+.++|. +++..                         
T Consensus       150 v~viD-~t~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~  224 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKS  224 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecC
Confidence            99999 87754333 21111   0112222221 233333444444443 22221                         


Q ss_pred             -------------------------eeccc----------cCCceeEEEeCCC-CeEEEEeC----------CCcEEEEe
Q 022303          227 -------------------------QIIRM----------HCAPVTSLSLSED-QLIISGSS----------LGSIAISG  260 (299)
Q Consensus       227 -------------------------~~~~~----------~~~~i~~~~~~~~-~~l~~~~~----------dg~i~iwd  260 (299)
                                               ..+..          .......+.++|+ +.+.++..          ++.|.++|
T Consensus       225 ~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID  304 (373)
T 2mad_H          225 GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT  304 (373)
T ss_pred             CEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEE
Confidence                                     11100          0111233677887 55555432          35799999


Q ss_pred             CCCCceEEEeeccCCCCcEEEEEccCCCC-eEEeee
Q 022303          261 LSSDQRVATLRSTDCTGHIICLMYPQFLH-MLFFLC  295 (299)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~s~s  295 (299)
                      +.+++.+.++....   ...+++|+|||+ +|+++.
T Consensus       305 ~~t~~vv~~i~~g~---~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          305 GLVGQTSSQISLGH---DVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             CCCCEEEEEEECCC---CcCeEEECCCCCeEEEEEc
Confidence            99999999996544   589999999999 676654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.00  E-value=1.5e-07  Score=76.64  Aligned_cols=179  Identities=9%  Similarity=0.018  Sum_probs=112.6

Q ss_pred             cccCeeEEEe-cCC-EEEE-------EeCCCcEEEEecCCceeEEEec-----CCCceeEEEEecC-CCEEEEEcCCeEE
Q 022303          111 HSVGVDQCRM-KRG-LILT-------GVGDKVMRLWSLEGYKCVEEYS-----LPNAASLVDFDFD-ESKIVGLIGTRIC  175 (299)
Q Consensus       111 h~~~i~~~~~-~~~-~l~s-------~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~l~~~~d~~i~  175 (299)
                      .-....++.| +++ ++++       +..++.|.+||..+++......     ....+..++++++ +++++++.++.|.
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~   95 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL   95 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEE
Confidence            3345567778 555 5555       5778999999988887643322     1134556899999 7666677666899


Q ss_pred             EEecCCcee-ee-ec-cCC---ccceeeeeccCCCeEEEecCC---------------CcEEEEEcCCcceeeeccccCC
Q 022303          176 IWRRNGLRS-VF-PS-REG---TFMKGLCMRYFDPEAVVGCED---------------GTARVFDMYSRKCSQIIRMHCA  234 (299)
Q Consensus       176 v~d~~~~~~-~~-~~-~~~---~~~~~~~~~~~~~~l~s~~~d---------------~~i~iwd~~~~~~~~~~~~~~~  234 (299)
                      +||.. ++. .+ .. ..+   .....+++.+++..+++...+               +.|..+|.. ++..... .+..
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~  172 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQ  172 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEES
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCC
Confidence            99988 432 22 11 111   112245677777665555444               567777765 5543332 3334


Q ss_pred             ceeEEEeC----CC-CeE-EEEeCCCcEEEEeCC-CCc-----eEEEeeccC-CCCcEEEEEccCCCCeEEee
Q 022303          235 PVTSLSLS----ED-QLI-ISGSSLGSIAISGLS-SDQ-----RVATLRSTD-CTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       235 ~i~~~~~~----~~-~~l-~~~~~dg~i~iwd~~-~~~-----~~~~~~~~~-~~~~i~~~~~s~~g~~l~s~  294 (299)
                      ....++++    |+ +.+ ++...++.|.+||+. +++     ....+..+. .  .+..++++++|+++++.
T Consensus       173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~--~p~~i~~d~~G~l~v~~  243 (314)
T 1pjx_A          173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG--GADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC--EEEEEEEBTTCCEEEEE
T ss_pred             CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCC--CCCceEECCCCCEEEEE
Confidence            56889999    88 555 444568899999986 443     222233222 3  68899999999887764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.96  E-value=2e-08  Score=84.02  Aligned_cols=130  Identities=8%  Similarity=-0.051  Sum_probs=93.1

Q ss_pred             ccccCeeEEEecCC-EEEEEeCCCcEEEEecCCceeEEEecCCCc-eeEEEEecCCCEEE-EEcCCeEEEEecCCceeee
Q 022303          110 AHSVGVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVF  186 (299)
Q Consensus       110 ~h~~~i~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~  186 (299)
                      .+.+ |+.+.| ++ +|+++ .++.|++||+.+.........+.. +..+.+.+.  .++ ++.||.+.+||+.+.....
T Consensus        86 ~lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~  160 (388)
T 1xip_A           86 EIPD-VIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ  160 (388)
T ss_dssp             ECTT-EEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE
T ss_pred             eCCC-eeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc
Confidence            4666 999999 65 88887 889999999886654444443332 333555443  255 9999999999998765332


Q ss_pred             eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcce--eeec------c---ccCCceeEEEeCCC-CeEEE
Q 022303          187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC--SQII------R---MHCAPVTSLSLSED-QLIIS  249 (299)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~------~---~~~~~i~~~~~~~~-~~l~~  249 (299)
                        .. ....++||++.+  ++.|..||.+++|+...++.  ..++      .   .|...|.++.|.++ .++++
T Consensus       161 --~~-~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          161 --LA-QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             --EE-ESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             --cc-CCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence              11 223367888888  78899999999999887664  4455      2   36788999999988 66665

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.93  E-value=2.9e-07  Score=84.28  Aligned_cols=201  Identities=7%  Similarity=-0.068  Sum_probs=125.3

Q ss_pred             hhhhccccceeecCce-------eeEEeeccccC----------eeEEEe-cCCEEEEEeCCCc--------------EE
Q 022303           88 ELAMKHHRFALEEGRI-------DIDQWKAHSVG----------VDQCRM-KRGLILTGVGDKV--------------MR  135 (299)
Q Consensus        88 ~~~~~~~~~~l~~g~~-------~~~~~~~h~~~----------i~~~~~-~~~~l~s~~~dg~--------------i~  135 (299)
                      ...++|+++.++-...       .++.+.-.++.          +..+.| ++..|+.++.++.              |+
T Consensus       167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~  246 (741)
T 1yr2_A          167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVW  246 (741)
T ss_dssp             EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEE
T ss_pred             eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEE
Confidence            4577888877654221       24443222211          234567 4466666666554              89


Q ss_pred             EEecCCcee--EEEecCCC---ceeEEEEecCCCEEE-EEcCC-----eEEEEecCCc--e--eeeeccCCccceeeeec
Q 022303          136 LWSLEGYKC--VEEYSLPN---AASLVDFDFDESKIV-GLIGT-----RICIWRRNGL--R--SVFPSREGTFMKGLCMR  200 (299)
Q Consensus       136 iwd~~~~~~--~~~~~~~~---~~~~~~~~~~~~~l~-~~~d~-----~i~v~d~~~~--~--~~~~~~~~~~~~~~~~~  200 (299)
                      +|++.+++.  ...+....   ....+.|+|||++|+ .+.++     .|++||+.++  .  ..+........  ..+.
T Consensus       247 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~~~  324 (741)
T 1yr2_A          247 LHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQW--DFVD  324 (741)
T ss_dssp             EEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCE--EEEE
T ss_pred             EEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceE--EEEe
Confidence            999887652  22333322   345699999999988 55443     8999999765  2  23333332222  1234


Q ss_pred             cCCCeEEEecC----CCcEEEEEcCCc--ceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCC-CCceEEEeecc
Q 022303          201 YFDPEAVVGCE----DGTARVFDMYSR--KCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLS-SDQRVATLRST  273 (299)
Q Consensus       201 ~~~~~l~s~~~----d~~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~  273 (299)
                      +++..|+..+.    ++.|.+||+.++  +....+..+...+..+.++.+.++++...|+..+||.+. +++.+..+..+
T Consensus       325 ~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~  404 (741)
T 1yr2_A          325 GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLP  404 (741)
T ss_dssp             EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCS
T ss_pred             ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCC
Confidence            77888766654    345999999874  233333344556777888755788888889987777554 46666766643


Q ss_pred             -CCCCcEEEEEccCCCCeEE
Q 022303          274 -DCTGHIICLMYPQFLHMLF  292 (299)
Q Consensus       274 -~~~~~i~~~~~s~~g~~l~  292 (299)
                       ..  .+..++++|+++.|+
T Consensus       405 ~~~--~v~~~~~s~d~~~l~  422 (741)
T 1yr2_A          405 GIG--SASGLSGRPGDRHAY  422 (741)
T ss_dssp             SSC--EEEEEECCBTCSCEE
T ss_pred             CCe--EEEEeecCCCCCEEE
Confidence             33  789999999987665

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.93  E-value=8.2e-08  Score=87.92  Aligned_cols=180  Identities=12%  Similarity=0.044  Sum_probs=109.7

Q ss_pred             cccCeeEEEe-cCC-EEEEEeCC-----CcEEEEecCCceeEEEecCCCce-eEEEEecCCCEEE-EEcCC---------
Q 022303          111 HSVGVDQCRM-KRG-LILTGVGD-----KVMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESKIV-GLIGT---------  172 (299)
Q Consensus       111 h~~~i~~~~~-~~~-~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~~d~---------  172 (299)
                      |...+..+.| |++ +|+.++.+     ..|++||+.+++.+.... +... ..++|+|| +.|+ +..++         
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            4345677788 676 66655443     369999999998765321 1111 34899999 8888 66554         


Q ss_pred             -----eEEEEecCCce----eeeeccCCc-cceeeeeccCCCeEEEecCC-----CcEEEEEcCCc--ceeeeccccCCc
Q 022303          173 -----RICIWRRNGLR----SVFPSREGT-FMKGLCMRYFDPEAVVGCED-----GTARVFDMYSR--KCSQIIRMHCAP  235 (299)
Q Consensus       173 -----~i~v~d~~~~~----~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~--~~~~~~~~~~~~  235 (299)
                           .|++|++.++.    .++...... ......+++++.+++..+.+     ..|.+||+.++  +....+..+...
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence                 38999997664    233332221 12345789999987765543     47999999876  313444444444


Q ss_pred             eeEEEeCCC-CeEEEEeC----CCcEEEEeCCCC-ceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          236 VTSLSLSED-QLIISGSS----LGSIAISGLSSD-QRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       236 i~~~~~~~~-~~l~~~~~----dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      +....+ |+ +.|+..+.    ++.|.+||+.++ .....+..+... .+..++++ ++.++++..
T Consensus       319 ~~~~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~~~~-~~~lv~~~~  381 (741)
T 1yr2_A          319 QWDFVD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD-NLESVGIA-GNRLFASYI  381 (741)
T ss_dssp             CEEEEE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS-EEEEEEEE-BTEEEEEEE
T ss_pred             eEEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC-eEEEEEEE-CCEEEEEEE
Confidence            444433 65 66666654    345999999875 233444333332 67778887 555555543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.91  E-value=4.4e-07  Score=75.14  Aligned_cols=185  Identities=7%  Similarity=-0.025  Sum_probs=116.9

Q ss_pred             ccccCeeEEEe-cCCEEEEEeC------CCcEEEEecCCceeEEEecCCC-------ceeEEEEecCCCEEE-E-E---c
Q 022303          110 AHSVGVDQCRM-KRGLILTGVG------DKVMRLWSLEGYKCVEEYSLPN-------AASLVDFDFDESKIV-G-L---I  170 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~-~-~---~  170 (299)
                      +|...+..+.+ +++.|.....      ++.|.+||+.+++.+..+..+.       ....+++++++..++ + .   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            45667889999 5564444432      5789999999999877776432       234589998655554 3 3   5


Q ss_pred             CCeEEEEecCCceee--eecc------------CC----------------ccceeeeeccCCCeEEEecCCC-cEEEEE
Q 022303          171 GTRICIWRRNGLRSV--FPSR------------EG----------------TFMKGLCMRYFDPEAVVGCEDG-TARVFD  219 (299)
Q Consensus       171 d~~i~v~d~~~~~~~--~~~~------------~~----------------~~~~~~~~~~~~~~l~s~~~d~-~i~iwd  219 (299)
                      ++.|.+||..+++..  ...+            .+                .....+++++++..|+.+..++ .+..++
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            789999998765421  1110            00                0123467888887777665554 444444


Q ss_pred             cCC---cc-----eeeec--cccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCC
Q 022303          220 MYS---RK-----CSQII--RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL  288 (299)
Q Consensus       220 ~~~---~~-----~~~~~--~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g  288 (299)
                      ...   +.     ....+  .++......++++++ .++++...++.|.+||..+++.......... ..+.+++|.++|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~-~~p~~va~~~~g  302 (343)
T 2qe8_A          224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKL-SWTDSFNFGSDG  302 (343)
T ss_dssp             HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGG-SCEEEEEECTTS
T ss_pred             HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCce-ecCCeeEECCCC
Confidence            321   10     00111  123345677999998 8888888899999999856764333332211 168999999999


Q ss_pred             CeEEeee
Q 022303          289 HMLFFLC  295 (299)
Q Consensus       289 ~~l~s~s  295 (299)
                      +++++.+
T Consensus       303 ~l~v~~~  309 (343)
T 2qe8_A          303 YLYFDCN  309 (343)
T ss_dssp             CEEEEEC
T ss_pred             cEEEEeC
Confidence            8888766

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.88  E-value=4.9e-06  Score=66.86  Aligned_cols=181  Identities=9%  Similarity=-0.048  Sum_probs=118.1

Q ss_pred             ccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEE-EecCC-CceeEEEEecCCCEEEEEc-CCeEEEEecCCcee
Q 022303          110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVE-EYSLP-NAASLVDFDFDESKIVGLI-GTRICIWRRNGLRS  184 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~-~~~~~~~~~~~~~~l~~~~-d~~i~v~d~~~~~~  184 (299)
                      .....+.++.+ +++ +.++...++.|.+||.. ++... .+... ..+..+++++++++.++.. ++.|..||......
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~   95 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFT   95 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCCeE
Confidence            34457788888 556 55555568999999988 55443 12222 3455588999998777544 78899999884333


Q ss_pred             eeecc-CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceee-eccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeC
Q 022303          185 VFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ-IIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGL  261 (299)
Q Consensus       185 ~~~~~-~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~  261 (299)
                      .+... .......+++.+++..+++...++.|..+|.. ++... .+......+..++++++ +++++...++.|..+|.
T Consensus        96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  174 (300)
T 2qc5_A           96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN  174 (300)
T ss_dssp             EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC
Confidence            23221 12223345666667666666667899999987 55542 22223456899999998 76666666788999998


Q ss_pred             CCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          262 SSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       262 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                       +++... +........+.+++++++|.+.++.
T Consensus       175 -~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~  205 (300)
T 2qc5_A          175 -TGKLEE-YPLPTNAAAPVGITSGNDGALWFVE  205 (300)
T ss_dssp             -TCCEEE-EECSSTTCCEEEEEECTTSSEEEEE
T ss_pred             -CCcEEE-eeCCCCCCCcceEEECCCCCEEEEc
Confidence             566543 3322111268999999999876654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.88  E-value=1.1e-06  Score=74.70  Aligned_cols=175  Identities=9%  Similarity=-0.061  Sum_probs=113.1

Q ss_pred             EEe-cCC-EEEEEeCCC--cEEEEecCCceeEEEe----c-CCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeee
Q 022303          118 CRM-KRG-LILTGVGDK--VMRLWSLEGYKCVEEY----S-LPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFP  187 (299)
Q Consensus       118 ~~~-~~~-~l~s~~~dg--~i~iwd~~~~~~~~~~----~-~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~  187 (299)
                      +++ +++ .|+.+..++  .|.+++..++.....+    . ....+..++++|++..|+ +..++.|+.||..+......
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence            566 444 777777766  7888888765543333    2 223445599999544444 77788999999987642221


Q ss_pred             ----c--cCCccce-eeeeccCCCe-EEEecCCCcEEEEEcCCcceeeecccc---------------CCceeEEEeCCC
Q 022303          188 ----S--REGTFMK-GLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMH---------------CAPVTSLSLSED  244 (299)
Q Consensus       188 ----~--~~~~~~~-~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~---------------~~~i~~~~~~~~  244 (299)
                          .  ..+.... .+++++.+.. +++-..++.|+.|+... + +..+.++               -.....++++++
T Consensus       256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d  333 (409)
T 3hrp_A          256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED  333 (409)
T ss_dssp             EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT
T ss_pred             ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC
Confidence                1  1111111 5688886555 55566788899998763 2 2222222               134789999999


Q ss_pred             -CeEEEEe-CCCcEEEEeCCCCceEEEeeccC-------------CCCcEEEEEccCCCCeEEeee
Q 022303          245 -QLIISGS-SLGSIAISGLSSDQRVATLRSTD-------------CTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       245 -~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-------------~~~~i~~~~~s~~g~~l~s~s  295 (299)
                       +++++-+ .++.|+.||+.+++. .++.++.             .......++++++|.++++-.
T Consensus       334 G~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~  398 (409)
T 3hrp_A          334 GNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEA  398 (409)
T ss_dssp             CCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEES
T ss_pred             CCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEEC
Confidence             8777777 889999999877764 4443331             012689999999987776643

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.86  E-value=1.1e-07  Score=80.56  Aligned_cols=97  Identities=6%  Similarity=-0.119  Sum_probs=72.2

Q ss_pred             CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EE----------cCCeEEEEecCCceeeeeccC--------Cc
Q 022303          132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL----------IGTRICIWRRNGLRSVFPSRE--------GT  192 (299)
Q Consensus       132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~----------~d~~i~v~d~~~~~~~~~~~~--------~~  192 (299)
                      +.|.++|..+++.+.++...... .+.++||++.++ +.          .++.|.++|..+.+..-....        +.
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~  177 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGT  177 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred             CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCC
Confidence            79999999999999999866666 899999999887 54          367899999998763322111        11


Q ss_pred             cceeeeeccCCCeEEEecC--CCcEEEEEcCCcceeeec
Q 022303          193 FMKGLCMRYFDPEAVVGCE--DGTARVFDMYSRKCSQII  229 (299)
Q Consensus       193 ~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~  229 (299)
                      ....+.+++++.+++++..  ++.|.+.|+.+++.+..+
T Consensus       178 ~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I  216 (426)
T 3c75_H          178 YQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRML  216 (426)
T ss_dssp             CGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred             CcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEE
Confidence            2234688999999877653  578999998887655433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.84  E-value=4.9e-07  Score=73.54  Aligned_cols=183  Identities=9%  Similarity=-0.003  Sum_probs=115.3

Q ss_pred             EEeeccccCeeEEEe-cCCEEEEEe-CCCcEEEEecCCceeEEEecC-C----CceeEEEEecCCCEEEE-----Ec---
Q 022303          106 DQWKAHSVGVDQCRM-KRGLILTGV-GDKVMRLWSLEGYKCVEEYSL-P----NAASLVDFDFDESKIVG-----LI---  170 (299)
Q Consensus       106 ~~~~~h~~~i~~~~~-~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~-~----~~~~~~~~~~~~~~l~~-----~~---  170 (299)
                      ..+..+...+..+.+ +++.|+.+. .++.|.+|+.. ++....... .    ..+..+++++++++.++     ..   
T Consensus        79 ~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~  157 (305)
T 3dr2_A           79 DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPS  157 (305)
T ss_dssp             EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGG
T ss_pred             EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccc
Confidence            344556667888888 566455554 55789999986 553322211 1    12334899999987773     21   


Q ss_pred             ----------CCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCC------CcEEEEEcCCccee--eec-cc
Q 022303          171 ----------GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED------GTARVFDMYSRKCS--QII-RM  231 (299)
Q Consensus       171 ----------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~--~~~-~~  231 (299)
                                .+.|+.+|..+++..... .......+++++++..++.+...      +.|.+||+..+...  ..+ ..
T Consensus       158 ~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~  236 (305)
T 3dr2_A          158 QGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV  236 (305)
T ss_dssp             GSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC
T ss_pred             cccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC
Confidence                      356888887655322111 11222356899999877766554      68999998754311  111 11


Q ss_pred             cCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          232 HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       232 ~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ....+..++++++ + |.+++.++ |.+|+. +++.+..+..+.   .+.+++|+|+++.|..++.
T Consensus       237 ~~~~pdgi~~d~~G~-lwv~~~~g-v~~~~~-~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          237 PDGLPDGFCVDRGGW-LWSSSGTG-VCVFDS-DGQLLGHIPTPG---TASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             SSSCCCSEEECTTSC-EEECCSSE-EEEECT-TSCEEEEEECSS---CCCEEEECTTSCEEEEEET
T ss_pred             CCCCCCeEEECCCCC-EEEecCCc-EEEECC-CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcC
Confidence            2344567888888 6 55555554 999998 588888887654   5788999999987776653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.84  E-value=8.6e-06  Score=65.43  Aligned_cols=177  Identities=11%  Similarity=0.048  Sum_probs=114.9

Q ss_pred             ccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecC---CCceeEEEEecCCCEEEEE-cCCeEEEEecCCceee
Q 022303          112 SVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSL---PNAASLVDFDFDESKIVGL-IGTRICIWRRNGLRSV  185 (299)
Q Consensus       112 ~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~  185 (299)
                      ...+..+.+ +++ +.++...++.|..+|.. ++.. .+..   ...+..+++++++++.++. .++.|..+|.......
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~  138 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYE  138 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEE
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEE
Confidence            356778888 555 55555557889999988 5543 2322   2345558999999887754 4789999998743332


Q ss_pred             eecc-CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeee-ccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022303          186 FPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS  262 (299)
Q Consensus       186 ~~~~-~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~  262 (299)
                      +... .......+++.+++..+++...++.|..+|. +++.... .......+..++++++ .++++....+.|.+||. 
T Consensus       139 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-  216 (300)
T 2qc5_A          139 YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-  216 (300)
T ss_dssp             EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-
T ss_pred             ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-
Confidence            2221 1222334567777775555556788999998 5554432 2233456889999988 76666666778999998 


Q ss_pred             CCceEEE-eeccCCCCcEEEEEccCCCCeEEee
Q 022303          263 SDQRVAT-LRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       263 ~~~~~~~-~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      +++.... +.....  .+.+++++++|++.++.
T Consensus       217 ~g~~~~~~~~~~~~--~~~~i~~d~~g~l~v~~  247 (300)
T 2qc5_A          217 TGEISEYDIPTPNA--RPHAITAGKNSEIWFTE  247 (300)
T ss_dssp             TCCEEEEECSSTTC--CEEEEEECSTTCEEEEE
T ss_pred             CCcEEEEECCCCCC--CceEEEECCCCCEEEec
Confidence            5554432 222223  78999999999866654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.83  E-value=1.7e-06  Score=70.01  Aligned_cols=174  Identities=10%  Similarity=0.062  Sum_probs=108.3

Q ss_pred             eEEEe-c-CC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCcee-eeecc-C
Q 022303          116 DQCRM-K-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRS-VFPSR-E  190 (299)
Q Consensus       116 ~~~~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~-~~~~~-~  190 (299)
                      -+..| + ++ ++++...++.|..||..+++. ..+.....+..++++++++++++. ++.|.+||..++.. .+... .
T Consensus        16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~   93 (297)
T 3g4e_A           16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDN   93 (297)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCT
T ss_pred             cCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCC
Confidence            34566 4 34 677777889999999988765 345555566679999999966655 67899999987642 22211 1


Q ss_pred             C---ccceeeeeccCCCeEEEecC---------CCcEEEEEcCC-cceeeeccccCCceeEEEeCCC-CeE-EEEeCCCc
Q 022303          191 G---TFMKGLCMRYFDPEAVVGCE---------DGTARVFDMYS-RKCSQIIRMHCAPVTSLSLSED-QLI-ISGSSLGS  255 (299)
Q Consensus       191 ~---~~~~~~~~~~~~~~l~s~~~---------d~~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~-~~l-~~~~~dg~  255 (299)
                      +   ....-+++.+++..+++...         ...-.+|.+.. ++... +.......+.++|+|+ +.| ++.+.++.
T Consensus        94 ~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~  172 (297)
T 3g4e_A           94 DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYS  172 (297)
T ss_dssp             TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTE
T ss_pred             CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEEecCCCCc
Confidence            1   11223567777775443321         12234444432 33322 2233445789999998 654 56666889


Q ss_pred             EEEEeC--CCCce-----EEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          256 IAISGL--SSDQR-----VATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       256 i~iwd~--~~~~~-----~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      |.+||+  .+++.     +..+.....  .+..++++++|++.++.
T Consensus       173 i~~~~~d~~~G~~~~~~~~~~~~~~~~--~p~g~~~d~~G~lwva~  216 (297)
T 3g4e_A          173 VDAFDYDLQTGQISNRRSVYKLEKEEQ--IPDGMCIDAEGKLWVAC  216 (297)
T ss_dssp             EEEEEECTTTCCEEEEEEEEECCGGGC--EEEEEEEBTTSCEEEEE
T ss_pred             EEEEeccCCCCcccCcEEEEECCCCCC--CCCeeEECCCCCEEEEE
Confidence            999987  45543     222222233  68899999999766654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.80  E-value=3e-07  Score=76.69  Aligned_cols=143  Identities=8%  Similarity=-0.059  Sum_probs=103.2

Q ss_pred             cCC-EEEEEeC-----CCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EE----------cCCeEEEEecCCce
Q 022303          121 KRG-LILTGVG-----DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL----------IGTRICIWRRNGLR  183 (299)
Q Consensus       121 ~~~-~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~----------~d~~i~v~d~~~~~  183 (299)
                      |++ .++....     ++.|.+.|..+++.+.++......- +.++|+++.++ +.          .++.|.+||..+.+
T Consensus        42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~  120 (386)
T 3sjl_D           42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL  120 (386)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence            455 4555443     6899999999999999998655444 99999999887 54          35789999999876


Q ss_pred             eeee--ccC------CccceeeeeccCCCeEEEecC--CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC
Q 022303          184 SVFP--SRE------GTFMKGLCMRYFDPEAVVGCE--DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS  252 (299)
Q Consensus       184 ~~~~--~~~------~~~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~  252 (299)
                      ..-.  ...      +.....+.+++++.+++++..  ++.|.++|+.+++.+.++....  . ...+..+ +.+++.+.
T Consensus       121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~  197 (386)
T 3sjl_D          121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCR  197 (386)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEET
T ss_pred             EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECC
Confidence            3322  211      123335789999999777753  6899999999999988885322  1 2223233 67778888


Q ss_pred             CCcEEEEeCCC-CceE
Q 022303          253 LGSIAISGLSS-DQRV  267 (299)
Q Consensus       253 dg~i~iwd~~~-~~~~  267 (299)
                      ||.+.+.++.+ ++..
T Consensus       198 DG~~~~v~~~~~g~v~  213 (386)
T 3sjl_D          198 DGSLAKVAFGTEGTPE  213 (386)
T ss_dssp             TSCEEEEECCSSSCCE
T ss_pred             CCCEEEEECCCCCeEE
Confidence            99999999976 5653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.79  E-value=2.1e-07  Score=84.55  Aligned_cols=179  Identities=12%  Similarity=0.071  Sum_probs=111.8

Q ss_pred             ccccCeeEEEe-cCC-EEE-EE----eCCCcEEEEecCCceeEEEecCCCc-eeEEEEecCCCEEE-EEcCC--------
Q 022303          110 AHSVGVDQCRM-KRG-LIL-TG----VGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIGT--------  172 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~-~l~-s~----~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~d~--------  172 (299)
                      +|...+..+.| |++ +|+ +.    +....|++||+.+++.+... .+.. ...++|+ |++.|+ ++.+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            45556777888 666 555 32    33357999999999865431 1111 1348899 999888 76663        


Q ss_pred             -----eEEEEecCCce----eeeeccC--CccceeeeeccCCCeEEE-ec---CCCcEEEEEcCCcc-eeeeccccCCce
Q 022303          173 -----RICIWRRNGLR----SVFPSRE--GTFMKGLCMRYFDPEAVV-GC---EDGTARVFDMYSRK-CSQIIRMHCAPV  236 (299)
Q Consensus       173 -----~i~v~d~~~~~----~~~~~~~--~~~~~~~~~~~~~~~l~s-~~---~d~~i~iwd~~~~~-~~~~~~~~~~~i  236 (299)
                           .|++|++.+..    .++....  ........+++++.+++. .+   ..+.|.++|+.++. ....+..+....
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence                 49999998764    2333322  111224578999998643 22   23589999998763 334444445444


Q ss_pred             eEEEeCC-C-CeEEEEeCC---CcEEEEeCCCCce--EEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          237 TSLSLSE-D-QLIISGSSL---GSIAISGLSSDQR--VATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       237 ~~~~~~~-~-~~l~~~~~d---g~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ... +++ + .+++....+   +.|..+|+.+++.  .+.+..+..  .+.  .|++++++|+...
T Consensus       284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~--~~s~~g~~lv~~~  344 (693)
T 3iuj_A          284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ--QVL--TVHSGSGYLFAEY  344 (693)
T ss_dssp             EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS--SCE--EEEEETTEEEEEE
T ss_pred             EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC--CEE--EEEEECCEEEEEE
Confidence            444 343 3 455555443   6799999987654  355655555  343  8899999887664

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.78  E-value=3e-09  Score=89.16  Aligned_cols=163  Identities=7%  Similarity=-0.088  Sum_probs=91.6

Q ss_pred             cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCce-e--EEEEecCCCEEEEEcCCeEEEEecCCceeeeeccCCcccee
Q 022303          121 KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-S--LVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKG  196 (299)
Q Consensus       121 ~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~--~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  196 (299)
                      .++ .+++++.||.|+.||.++|+.+..+..+... .  ...+..++..++++.++.++.||..+++.........   .
T Consensus        47 ~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~  123 (369)
T 2hz6_A           47 VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---A  123 (369)
T ss_dssp             ---CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC----------------
T ss_pred             cCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---c
Confidence            455 7777889999999999999887766543211 1  1111123333338889999999999886544332221   1


Q ss_pred             eeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC----CeEEEEeCCCcEEEEeCCCCceEEEeec
Q 022303          197 LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED----QLIISGSSLGSIAISGLSSDQRVATLRS  272 (299)
Q Consensus       197 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~  272 (299)
                      ...++.+..+++++.++.|+.||.++++.+..+....  .....+.++    ..+++++.||.|+.||.++|+.+.+...
T Consensus       124 ~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~  201 (369)
T 2hz6_A          124 DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY  201 (369)
T ss_dssp             ---------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred             ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence            2344567778899999999999999998877664221  222333332    4677889999999999999999888764


Q ss_pred             cCCCCcEEEEEccCCCCe
Q 022303          273 TDCTGHIICLMYPQFLHM  290 (299)
Q Consensus       273 ~~~~~~i~~~~~s~~g~~  290 (299)
                      ...  .+....++++|..
T Consensus       202 ~~p--v~~~~~~~~dg~~  217 (369)
T 2hz6_A          202 ASP--VVAFYVWQREGLR  217 (369)
T ss_dssp             SSC--EEEEEECTTSSCE
T ss_pred             CCc--eEEEEEecCCceE
Confidence            432  3344567777753

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.75  E-value=6.7e-07  Score=81.03  Aligned_cols=174  Identities=10%  Similarity=0.044  Sum_probs=113.1

Q ss_pred             EEe-c-CCEEEEEeCCCc-------------------EEEEecCCceeEEEecCC--C--------ceeEEEEecCCC--
Q 022303          118 CRM-K-RGLILTGVGDKV-------------------MRLWSLEGYKCVEEYSLP--N--------AASLVDFDFDES--  164 (299)
Q Consensus       118 ~~~-~-~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~--~--------~~~~~~~~~~~~--  164 (299)
                      +.+ + .++++.++.++.                   |..+|..+|+.+..++..  .        ..+......+++  
T Consensus       240 ~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~  319 (689)
T 1yiq_A          240 FAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPR  319 (689)
T ss_dssp             EEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE
T ss_pred             eeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEE
Confidence            455 3 348888877763                   999999999999887642  1        122233344564  


Q ss_pred             -EEE-EEcCCeEEEEecCCceeeeeccCCc----------------------------------------cceeeeeccC
Q 022303          165 -KIV-GLIGTRICIWRRNGLRSVFPSREGT----------------------------------------FMKGLCMRYF  202 (299)
Q Consensus       165 -~l~-~~~d~~i~v~d~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~  202 (299)
                       .++ ++.+|.++++|..+++.+.......                                        .-..+++++.
T Consensus       320 ~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~  399 (689)
T 1yiq_A          320 KVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPD  399 (689)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred             EEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCC
Confidence             455 8889999999998886442111000                                        0001345555


Q ss_pred             CCeEEEec---------------------------------------------CCCcEEEEEcCCcceeeeccccCCcee
Q 022303          203 DPEAVVGC---------------------------------------------EDGTARVFDMYSRKCSQIIRMHCAPVT  237 (299)
Q Consensus       203 ~~~l~s~~---------------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~i~  237 (299)
                      ...+++..                                             .+|.|..||+.+++.+..+..+. ++.
T Consensus       400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~  478 (689)
T 1yiq_A          400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFN  478 (689)
T ss_dssp             TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCC
T ss_pred             CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-Ccc
Confidence            55544431                                             14779999999999988875433 233


Q ss_pred             EEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022303          238 SLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       238 ~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      .-.+... .+++.|+.||.|+.||.++|+.+.+++..... .-.-+.|..+|+..++
T Consensus       479 ~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~-~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          479 GGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGV-MAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEEEE
T ss_pred             CccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCc-ccCceEEEECCEEEEE
Confidence            2233334 78899999999999999999999988766432 1233566778875443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.75  E-value=2.5e-06  Score=69.29  Aligned_cols=183  Identities=8%  Similarity=-0.065  Sum_probs=111.9

Q ss_pred             EEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCC-CceeEEEEecCCCEEEEEc-CCeEEEEecC
Q 022303          106 DQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLI-GTRICIWRRN  180 (299)
Q Consensus       106 ~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-d~~i~v~d~~  180 (299)
                      ..+...........| +++  ++++...++.|..|+. +++. ..+..+ ..+..++++++++++++.. ++.|..|+..
T Consensus        38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            333444445566777 544  6777888899999998 4543 333333 3445599999999777554 5789999986


Q ss_pred             Cceeeeec-cCCc---cceeeeeccCCCeEEE----ecC-------------CCcEEEEEcCCcceeeeccccCCceeEE
Q 022303          181 GLRSVFPS-REGT---FMKGLCMRYFDPEAVV----GCE-------------DGTARVFDMYSRKCSQIIRMHCAPVTSL  239 (299)
Q Consensus       181 ~~~~~~~~-~~~~---~~~~~~~~~~~~~l~s----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~i~~~  239 (299)
                      .....+.. ..+.   ....+++.+++..+++    |..             .+.|..+|..+++.....  .......+
T Consensus       116 g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl  193 (305)
T 3dr2_A          116 GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGL  193 (305)
T ss_dssp             SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEE
T ss_pred             CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcce
Confidence            43322211 1111   1123577777776665    332             256778887766654333  34457889


Q ss_pred             EeCCC-CeEEEEeCC------CcEEEEeCCCCceE--EEeec-cCCCCcEEEEEccCCCCeEEee
Q 022303          240 SLSED-QLIISGSSL------GSIAISGLSSDQRV--ATLRS-TDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       240 ~~~~~-~~l~~~~~d------g~i~iwd~~~~~~~--~~~~~-~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      +|+|+ +.|+.+...      +.|.+|++..+...  ..+.. ...  ....++++++|++.++.
T Consensus       194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~--~pdgi~~d~~G~lwv~~  256 (305)
T 3dr2_A          194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG--LPDGFCVDRGGWLWSSS  256 (305)
T ss_dssp             EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS--CCCSEEECTTSCEEECC
T ss_pred             EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC--CCCeEEECCCCCEEEec
Confidence            99999 767666554      78999998754411  11111 122  45678888888855543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.75  E-value=4e-06  Score=68.84  Aligned_cols=172  Identities=9%  Similarity=-0.025  Sum_probs=107.6

Q ss_pred             eEEEe-cC-C-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCceee-eeccC-
Q 022303          116 DQCRM-KR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSV-FPSRE-  190 (299)
Q Consensus       116 ~~~~~-~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~-~~~~~-  190 (299)
                      ....| ++ + ++++...++.|..||..+++.. .+.....+..+.+++++++++++. ..|.+||..++... +.... 
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l~v~~~-~gl~~~d~~~g~~~~~~~~~~  129 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIASD-DGLFLRDTATGVLTLHAELES  129 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSST
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeEEEEEC-CCEEEEECCCCcEEEEeeCCC
Confidence            45566 44 4 6777777899999999887653 344445566689999998887664 45999998766422 22111 


Q ss_pred             ---CccceeeeeccCCCeEEEecC------CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeE-EEEeCCCcEEEE
Q 022303          191 ---GTFMKGLCMRYFDPEAVVGCE------DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI-ISGSSLGSIAIS  259 (299)
Q Consensus       191 ---~~~~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l-~~~~~dg~i~iw  259 (299)
                         ......+++.+++..+++...      .+.|..++  +++... +.........++|+|+ +.+ ++.+.++.|.+|
T Consensus       130 ~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~  206 (326)
T 2ghs_A          130 DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRV  206 (326)
T ss_dssp             TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred             CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEE
Confidence               111223567777775544322      24565666  454332 2233345788999998 655 445567899999


Q ss_pred             eCC--CC-ce-----EEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          260 GLS--SD-QR-----VATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       260 d~~--~~-~~-----~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      |+.  ++ +.     +..+.....  .+.+++++++|.+.++.
T Consensus       207 d~~~~~Gl~~~~~~~~~~~~~~~~--~p~gi~~d~~G~lwva~  247 (326)
T 2ghs_A          207 PLDARTGLPTGKAEVFIDSTGIKG--GMDGSVCDAEGHIWNAR  247 (326)
T ss_dssp             EBCTTTCCBSSCCEEEEECTTSSS--EEEEEEECTTSCEEEEE
T ss_pred             EcccccCCcccCceEEEECCCCCC--CCCeeEECCCCCEEEEE
Confidence            986  55 32     222222223  67889999999876654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.74  E-value=3.6e-06  Score=70.47  Aligned_cols=130  Identities=3%  Similarity=-0.114  Sum_probs=95.2

Q ss_pred             cEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EE----------cCCeEEEEecCCceeeeeccC--------Ccc
Q 022303          133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL----------IGTRICIWRRNGLRSVFPSRE--------GTF  193 (299)
Q Consensus       133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~----------~d~~i~v~d~~~~~~~~~~~~--------~~~  193 (299)
                      +|.++|..+++.+..+...... .++++||++.++ +.          .++.|.+||..+.+.......        +..
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~  126 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY  126 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCC
Confidence            8899999999999888866555 899999999988 43          267899999987643322111        112


Q ss_pred             ceeeeeccCCCeEEEecC--CCcEEEEEcCCcceeee-ccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCceEE
Q 022303          194 MKGLCMRYFDPEAVVGCE--DGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVA  268 (299)
Q Consensus       194 ~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~  268 (299)
                      ...+.++|++.+++++..  ++.|.++| .+++.+.. +... .   ++.+.|+  +.+++.+.||.+.++|. +++.+.
T Consensus       127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~  200 (373)
T 2mad_H          127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG  200 (373)
T ss_pred             ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence            234689999999887764  57899999 99988877 6432 2   2334444  56677888999999999 887664


Q ss_pred             E
Q 022303          269 T  269 (299)
Q Consensus       269 ~  269 (299)
                      .
T Consensus       201 ~  201 (373)
T 2mad_H          201 A  201 (373)
T ss_pred             E
Confidence            3

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.74  E-value=4.1e-07  Score=82.23  Aligned_cols=158  Identities=9%  Similarity=0.027  Sum_probs=105.7

Q ss_pred             cEEEEecCCceeEEEecCC----------CceeEEEEecCC---CEEE-EEcCCeEEEEecCCceeeeeccCCccc----
Q 022303          133 VMRLWSLEGYKCVEEYSLP----------NAASLVDFDFDE---SKIV-GLIGTRICIWRRNGLRSVFPSREGTFM----  194 (299)
Q Consensus       133 ~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~---~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~----  194 (299)
                      .|..+|..+|+.+..++..          ...+.+....++   ..++ ++.+|.++++|..+++.+.........    
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            5999999999999887642          123334444577   4566 889999999999988644322111000    


Q ss_pred             --------------------------------eeeeeccCCCeEEEecC-------------------------------
Q 022303          195 --------------------------------KGLCMRYFDPEAVVGCE-------------------------------  211 (299)
Q Consensus       195 --------------------------------~~~~~~~~~~~l~s~~~-------------------------------  211 (299)
                                                      ..+++++....+++...                               
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  443 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence                                            02355566666555322                               


Q ss_pred             ------------CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCc
Q 022303          212 ------------DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGH  278 (299)
Q Consensus       212 ------------d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  278 (299)
                                  .+.|..||+.+++.+..+.. ..++....+..+ .+++.++.||.+++||.++++.+.++...... .
T Consensus       444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~-~  521 (677)
T 1kb0_A          444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGV-V  521 (677)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-C
T ss_pred             cccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCc-c
Confidence                        27899999999999888753 333444444444 78888999999999999999999999765532 2


Q ss_pred             EEEEEccCCCCeEE
Q 022303          279 IICLMYPQFLHMLF  292 (299)
Q Consensus       279 i~~~~~s~~g~~l~  292 (299)
                      -.-+.+.++|+.++
T Consensus       522 ~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          522 AAPSTYMVDGRQYV  535 (677)
T ss_dssp             SCCEEEEETTEEEE
T ss_pred             cCCEEEEeCCEEEE
Confidence            23345667886444

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.74  E-value=5.1e-06  Score=69.28  Aligned_cols=172  Identities=10%  Similarity=0.021  Sum_probs=105.8

Q ss_pred             EEe-cCC-EEEEEeC--CCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCC-ceeeee--cc
Q 022303          118 CRM-KRG-LILTGVG--DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNG-LRSVFP--SR  189 (299)
Q Consensus       118 ~~~-~~~-~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~-~~~~~~--~~  189 (299)
                      +.+ +++ +++.+..  ++.|.++|+.+++.+.++..+..  ...+....+.++ .+.||++.+.++.. ++....  ..
T Consensus       142 ~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~  219 (386)
T 3sjl_D          142 TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV  219 (386)
T ss_dssp             EEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred             EEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecce
Confidence            455 566 6666653  68999999999999998876542  222222334444 77788887777765 322110  00


Q ss_pred             C----Cccceeeeec-cCCCeEEEecCCCcEEEEEcCCcc--eeeecc----------ccCCceeEEEeCCC-CeEEEEe
Q 022303          190 E----GTFMKGLCMR-YFDPEAVVGCEDGTARVFDMYSRK--CSQIIR----------MHCAPVTSLSLSED-QLIISGS  251 (299)
Q Consensus       190 ~----~~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~----------~~~~~i~~~~~~~~-~~l~~~~  251 (299)
                      .    .....-..+. +++ .++..+.+|.+.+.|..+..  .+..+.          -.......++++++ +.+....
T Consensus       220 ~~~~~~~~~~~~~~~~~dG-~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~  298 (386)
T 3sjl_D          220 FHPEDEFLINHPAYSQKAG-RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLV  298 (386)
T ss_dssp             CSCTTSCBCSCCEEETTTT-EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred             eccccccccccceeEcCCC-cEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEe
Confidence            0    1100001232 334 34446668999999997553  232221          01223345777887 5555543


Q ss_pred             C----------CCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCC-eEEeee
Q 022303          252 S----------LGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLH-MLFFLC  295 (299)
Q Consensus       252 ~----------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~s~s  295 (299)
                      .          .+.|.+.|+.+++.+.++....   .+.+|++++|++ +|+++.
T Consensus       299 ~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~---~~~~lavs~D~~~~ly~tn  350 (386)
T 3sjl_D          299 DQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH---EIDSINVSQDEKPLLYALS  350 (386)
T ss_dssp             EECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---EECEEEECSSSSCEEEEEE
T ss_pred             ccccccccCCCCCEEEEEECCCCeEEEEEECCC---CcceEEECCCCCeEEEEEc
Confidence            2          2579999999999999997665   689999999997 676654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.71  E-value=3.2e-06  Score=71.29  Aligned_cols=175  Identities=11%  Similarity=0.134  Sum_probs=112.4

Q ss_pred             cCCEEEEEeCC------CcEEEEecCCceeEEEecCC-C-c--eeEEEEecCCCEEEEEc--------------------
Q 022303          121 KRGLILTGVGD------KVMRLWSLEGYKCVEEYSLP-N-A--ASLVDFDFDESKIVGLI--------------------  170 (299)
Q Consensus       121 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~l~~~~--------------------  170 (299)
                      ++++++++..+      |.|.+.|.++++.+.++... . .  ...+-|+|+++.++.+.                    
T Consensus       147 pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~  226 (462)
T 2ece_A          147 PDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRY  226 (462)
T ss_dssp             SSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHS
T ss_pred             CCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhcc
Confidence            67755565555      78999999999999998733 2 1  22377799999888653                    


Q ss_pred             CCeEEEEecCCceeeeeccCC---cccee--eeeccCCCeEEEec------CCCcEEEEEcCCcc--eeeec--cc----
Q 022303          171 GTRICIWRRNGLRSVFPSREG---TFMKG--LCMRYFDPEAVVGC------EDGTARVFDMYSRK--CSQII--RM----  231 (299)
Q Consensus       171 d~~i~v~d~~~~~~~~~~~~~---~~~~~--~~~~~~~~~l~s~~------~d~~i~iwd~~~~~--~~~~~--~~----  231 (299)
                      +.+|.+||+.+.+.......+   ....-  +++++++++++.+.      .+++|.+|....++  ..+.+  ..    
T Consensus       227 ~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~  306 (462)
T 2ece_A          227 GNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLE  306 (462)
T ss_dssp             CCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECC
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccc
Confidence            789999999976533222221   11112  34588888855554      56678776554332  11111  00    


Q ss_pred             ------------cCCceeEEEeCCC-CeEEEEe-CCCcEEEEeCCC---CceEEEeeccCC------------CCcEEEE
Q 022303          232 ------------HCAPVTSLSLSED-QLIISGS-SLGSIAISGLSS---DQRVATLRSTDC------------TGHIICL  282 (299)
Q Consensus       232 ------------~~~~i~~~~~~~~-~~l~~~~-~dg~i~iwd~~~---~~~~~~~~~~~~------------~~~i~~~  282 (299)
                                  ....+..|.+++| ++|.++. ..+.|.+||+..   .+.+..+.....            .+..+.+
T Consensus       307 ~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~  386 (462)
T 2ece_A          307 GNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQML  386 (462)
T ss_dssp             SSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCE
T ss_pred             ccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEE
Confidence                        0244788999999 7666555 478999999853   355555543310            0125789


Q ss_pred             EccCCCCeEEeee
Q 022303          283 MYPQFLHMLFFLC  295 (299)
Q Consensus       283 ~~s~~g~~l~s~s  295 (299)
                      +++|||++|+++.
T Consensus       387 ~lSpDGk~LyVaN  399 (462)
T 2ece_A          387 EISRDGRRVYVTN  399 (462)
T ss_dssp             EECTTSSEEEEEC
T ss_pred             EEcCCCCEEEEEc
Confidence            9999999888765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.70  E-value=5.9e-07  Score=78.32  Aligned_cols=181  Identities=10%  Similarity=-0.044  Sum_probs=124.2

Q ss_pred             CeeEEEe---cCC-EEEEEe------------------CCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEc
Q 022303          114 GVDQCRM---KRG-LILTGV------------------GDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI  170 (299)
Q Consensus       114 ~i~~~~~---~~~-~l~s~~------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~  170 (299)
                      ....+.+   |++ +++.++                  .++.+.+.|.++.+.+.++......-.++++|++++++ ++.
T Consensus       135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~  214 (595)
T 1fwx_A          135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSY  214 (595)
T ss_dssp             SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEES
T ss_pred             CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEec
Confidence            4566665   555 777774                  34689999999999998888654444589999999988 554


Q ss_pred             CC--------------------------------------eEEEEecCC--cee-eeeccCCccceeeeeccCCCeE-EE
Q 022303          171 GT--------------------------------------RICIWRRNG--LRS-VFPSREGTFMKGLCMRYFDPEA-VV  208 (299)
Q Consensus       171 d~--------------------------------------~i~v~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~l-~s  208 (299)
                      +.                                      .|.+.|..+  ... +.....+.....+.++|++.++ ++
T Consensus       215 ~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~  294 (595)
T 1fwx_A          215 NSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVA  294 (595)
T ss_dssp             CTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEE
T ss_pred             CcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEe
Confidence            32                                      255555554  211 1122222223356899999984 55


Q ss_pred             ecCCCcEEEEEcCCcc------------eeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC----------Cc
Q 022303          209 GCEDGTARVFDMYSRK------------CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS----------DQ  265 (299)
Q Consensus       209 ~~~d~~i~iwd~~~~~------------~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~----------~~  265 (299)
                      +..+.+|.++|+.+.+            ...+... ......++|+|+ ...++.-.|++|.+||+.+          .+
T Consensus       295 ~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~  373 (595)
T 1fwx_A          295 GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDP  373 (595)
T ss_dssp             CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCC
T ss_pred             CCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccce
Confidence            5678999999999653            3334432 345789999998 6666777899999999977          56


Q ss_pred             eEEEeeccCCCCcE-----EEEEccCCCCeEEeeecc
Q 022303          266 RVATLRSTDCTGHI-----ICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       266 ~~~~~~~~~~~~~i-----~~~~~s~~g~~l~s~s~~  297 (299)
                      .+.++..+..  +-     .++.++|||++|+++.-+
T Consensus       374 vi~kidV~yq--pGh~~~~~g~t~~~DGk~l~~~Nk~  408 (595)
T 1fwx_A          374 IKDKLDVHYQ--PGHLKTVMGETLDATNDWLVCLSKF  408 (595)
T ss_dssp             EEEEEECSSC--EEEEEETTTTSTTCCSSEEEEEESC
T ss_pred             eEEEeecccc--cccceeccceEeCCCCCEEEEcCCC
Confidence            7788877654  22     223568999999998654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.65  E-value=1.6e-06  Score=71.00  Aligned_cols=172  Identities=10%  Similarity=-0.006  Sum_probs=112.6

Q ss_pred             cCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEEEEcCCeEEEEecCCceeeeeccC
Q 022303          113 VGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIVGLIGTRICIWRRNGLRSVFPSRE  190 (299)
Q Consensus       113 ~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~  190 (299)
                      ..+.++.. +++.+..++.++.|..+|.. ++....+..+...+. +...+++.+.+++  +.+..+| .++........
T Consensus       137 ~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~  212 (330)
T 3hxj_A          137 AIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYA  212 (330)
T ss_dssp             CCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECC
T ss_pred             ceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEcc
Confidence            33444445 35678888888999999998 887777765544443 6777788776666  8899999 55433322221


Q ss_pred             C-ccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEE
Q 022303          191 G-TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVAT  269 (299)
Q Consensus       191 ~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  269 (299)
                      . .....+....++ .+..++.++.+..+|. +++.+..+......+..+.+.++..|..++.+|.|..+|. +++.+..
T Consensus       213 ~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~  289 (330)
T 3hxj_A          213 GYWTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWN  289 (330)
T ss_dssp             SSCCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEE
T ss_pred             CCcceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEE
Confidence            1 111122333332 5777777888888874 5666666554444445566665656778888989999996 7887777


Q ss_pred             eeccCCCCcEEEEEccCCCCeEEe
Q 022303          270 LRSTDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       270 ~~~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      +.....  .+.++..+++|++.+.
T Consensus       290 ~~~~~~--~~~~~~~d~~g~l~~g  311 (330)
T 3hxj_A          290 FETGSW--IIATPVIDENGTIYFG  311 (330)
T ss_dssp             EECSSC--CCSCCEECTTCCEEEE
T ss_pred             EEcCCc--cccceEEcCCCEEEEE
Confidence            765544  6777788788876654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.64  E-value=1.6e-06  Score=72.25  Aligned_cols=176  Identities=7%  Similarity=-0.014  Sum_probs=117.3

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEe----------CCCcEEEEecCCceeEEEecCC--------CceeEEEEecCCC
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGV----------GDKVMRLWSLEGYKCVEEYSLP--------NAASLVDFDFDES  164 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~  164 (299)
                      +.++..-..+  .+.+ +++ +++.+.          .++.|.+||..+++.+.++..+        .....+.++||++
T Consensus        59 ~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk  136 (368)
T 1mda_H           59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA  136 (368)
T ss_dssp             EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred             EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC
Confidence            3444433445  5777 666 666554          4789999999999999998754        2344599999999


Q ss_pred             EEE-EEc--CCeEEE--EecCCceee---------------------------eeccC----------------------
Q 022303          165 KIV-GLI--GTRICI--WRRNGLRSV---------------------------FPSRE----------------------  190 (299)
Q Consensus       165 ~l~-~~~--d~~i~v--~d~~~~~~~---------------------------~~~~~----------------------  190 (299)
                      +++ +..  +..+.+  +|..+-..+                           +....                      
T Consensus       137 ~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P  216 (368)
T 1mda_H          137 CLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA  216 (368)
T ss_dssp             CEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred             EEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCc
Confidence            988 553  456777  776320000                           00000                      


Q ss_pred             --------------Ccc--------------------------------ceeeeeccCCCeEEEecC---------CCcE
Q 022303          191 --------------GTF--------------------------------MKGLCMRYFDPEAVVGCE---------DGTA  215 (299)
Q Consensus       191 --------------~~~--------------------------------~~~~~~~~~~~~l~s~~~---------d~~i  215 (299)
                                    +..                                ...+++++++..++.+..         ++.+
T Consensus       217 ~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~  296 (368)
T 1mda_H          217 AQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT  296 (368)
T ss_dssp             EEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred             cccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCE
Confidence                          000                                000345666677665432         2356


Q ss_pred             EEEEcCCcceeeeccccCCceeEEEeCCC-C-eEEEEe-CCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccC
Q 022303          216 RVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGS-SLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQ  286 (299)
Q Consensus       216 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  286 (299)
                      .++|+.+.+.+..+.... ....++++|| + .+++.. .++.|.++|+.+++.+.++....   ....+++.+
T Consensus       297 ~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~---~P~~i~~~~  366 (368)
T 1mda_H          297 SSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK---GPESLSVQN  366 (368)
T ss_dssp             EEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS---CCCEEECCC
T ss_pred             EEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC---CCCEEEeec
Confidence            699999999988886433 5899999998 5 566776 59999999999999999997665   456677654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.60  E-value=6.8e-06  Score=69.34  Aligned_cols=173  Identities=9%  Similarity=-0.021  Sum_probs=111.7

Q ss_pred             EEEEEeCCCcEEEEecCCc----eeEEEec--------CCCceeEEEEecCCCEEE-EEcC------CeEEEEecCCcee
Q 022303          124 LILTGVGDKVMRLWSLEGY----KCVEEYS--------LPNAASLVDFDFDESKIV-GLIG------TRICIWRRNGLRS  184 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~----~~~~~~~--------~~~~~~~~~~~~~~~~l~-~~~d------~~i~v~d~~~~~~  184 (299)
                      +++++..+++|.++|+.+.    +...+++        +......+...|++ .++ +..+      +.|.++|..+.+.
T Consensus        98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v  176 (462)
T 2ece_A           98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP  176 (462)
T ss_dssp             EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred             EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence            6677888899999999765    7777773        11233447888999 555 4444      6899999997753


Q ss_pred             eeeccCC--cc--ceeeeeccCCCeEEEec-------------------CCCcEEEEEcCCcceeeecccc--CCceeEE
Q 022303          185 VFPSREG--TF--MKGLCMRYFDPEAVVGC-------------------EDGTARVFDMYSRKCSQIIRMH--CAPVTSL  239 (299)
Q Consensus       185 ~~~~~~~--~~--~~~~~~~~~~~~l~s~~-------------------~d~~i~iwd~~~~~~~~~~~~~--~~~i~~~  239 (299)
                      +-....+  ..  ..-+.+++..+.+++..                   .+.+|.+||+.+++.+.++...  ......+
T Consensus       177 ~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i  256 (462)
T 2ece_A          177 LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALEL  256 (462)
T ss_dssp             EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEE
T ss_pred             EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcccee
Confidence            3222211  11  11145678888777763                   4789999999998888877642  1334555


Q ss_pred             Ee--CCC-CeEEEEe------CCCcEEEEeCCCCce--EEEeeccC----C------------CCcEEEEEccCCCCeEE
Q 022303          240 SL--SED-QLIISGS------SLGSIAISGLSSDQR--VATLRSTD----C------------TGHIICLMYPQFLHMLF  292 (299)
Q Consensus       240 ~~--~~~-~~l~~~~------~dg~i~iwd~~~~~~--~~~~~~~~----~------------~~~i~~~~~s~~g~~l~  292 (299)
                      .|  +|+ +++.+++      .+++|.+|....++.  .+.+....    .            ......+.+||||++|.
T Consensus       257 ~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLY  336 (462)
T 2ece_A          257 RPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLY  336 (462)
T ss_dssp             EECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEE
T ss_pred             EeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEE
Confidence            55  898 7666555      566888776654421  12211000    0            01578899999999999


Q ss_pred             eeecc
Q 022303          293 FLCFL  297 (299)
Q Consensus       293 s~s~~  297 (299)
                      ++.+.
T Consensus       337 VSnrg  341 (462)
T 2ece_A          337 LSLWG  341 (462)
T ss_dssp             EEETT
T ss_pred             EEeCC
Confidence            88753

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.60  E-value=2.1e-06  Score=71.43  Aligned_cols=97  Identities=5%  Similarity=-0.220  Sum_probs=68.0

Q ss_pred             EEEEEeCCC----cEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EE----------cCCeEEEEecCCceeeeec
Q 022303          124 LILTGVGDK----VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL----------IGTRICIWRRNGLRSVFPS  188 (299)
Q Consensus       124 ~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~----------~d~~i~v~d~~~~~~~~~~  188 (299)
                      .+++-..++    +|.+.|..+++.+.++...... .+.++|+++.++ +.          .++.|.+||+.+.+.....
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I  112 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI  112 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEE
Confidence            344444444    8889999999999999865555 799999999988 54          3689999999987643322


Q ss_pred             cC--------CccceeeeeccCCCeEEEecC--CCcEEE--EEcC
Q 022303          189 RE--------GTFMKGLCMRYFDPEAVVGCE--DGTARV--FDMY  221 (299)
Q Consensus       189 ~~--------~~~~~~~~~~~~~~~l~s~~~--d~~i~i--wd~~  221 (299)
                      ..        +.....+++++++.+++++..  +..+.+  +|..
T Consensus       113 ~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~  157 (368)
T 1mda_H          113 ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS  157 (368)
T ss_dssp             EETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE
T ss_pred             ECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchh
Confidence            11        112234688888888777653  355777  7663

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.58  E-value=3.6e-06  Score=68.79  Aligned_cols=164  Identities=9%  Similarity=-0.060  Sum_probs=108.3

Q ss_pred             cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEEEEcCCeEEEEecCCceeeeec-cCCccceeee
Q 022303          121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIVGLIGTRICIWRRNGLRSVFPS-REGTFMKGLC  198 (299)
Q Consensus       121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~  198 (299)
                      .++.+..++.++.|..+|.. ++.......+..... +...+++.+.+++.++.+..+|.. +...... ........+.
T Consensus       106 ~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          106 FEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             ETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             ECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence            46688889999999999988 777776665544443 667778887778888999999998 4322211 1122111223


Q ss_pred             eccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCc
Q 022303          199 MRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGH  278 (299)
Q Consensus       199 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  278 (299)
                      ...++ .+..++  +.+..+| .+++.+..+......+.++...++..+..++.++.|..+|. +++.+..+.....  .
T Consensus       184 ~d~~g-~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~  256 (330)
T 3hxj_A          184 IGKDG-TIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKR--I  256 (330)
T ss_dssp             ECTTC-CEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSC--C
T ss_pred             EcCCC-EEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCC--c
Confidence            33333 356666  8899999 77777766655556688888887755777777888988884 6776666654433  3


Q ss_pred             EEEEEccCCCCeEEe
Q 022303          279 IICLMYPQFLHMLFF  293 (299)
Q Consensus       279 i~~~~~s~~g~~l~s  293 (299)
                      +.++.+.++|...++
T Consensus       257 ~~~~~~~~~g~l~v~  271 (330)
T 3hxj_A          257 ESSPVIGNTDTIYFG  271 (330)
T ss_dssp             CSCCEECTTSCEEEE
T ss_pred             cccceEcCCCeEEEe
Confidence            444555556654443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.57  E-value=2e-06  Score=72.05  Aligned_cols=148  Identities=9%  Similarity=-0.019  Sum_probs=102.3

Q ss_pred             cCCEEEEEeCCCcEEEEecCCceeEEEecCCCc-----------eeE-EEEecCCCEEEEEcCCeEEEEecCCceeeeec
Q 022303          121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA-----------ASL-VDFDFDESKIVGLIGTRICIWRRNGLRSVFPS  188 (299)
Q Consensus       121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~  188 (299)
                      .++.++.++.++.+..+|..+++.+........           ... ... .++..++++.++.+..+|..+++.....
T Consensus       187 ~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~~~~g~l~~~d~~tG~~~w~~  265 (376)
T 3q7m_A          187 AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFALAYNGNLTALDLRSGQIMWKR  265 (376)
T ss_dssp             ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETTEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCEEEEEecCcEEEEEECCCCcEEeec
Confidence            355788889999999999999998877764321           111 111 1333444888999999999888755544


Q ss_pred             cCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc-cCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceE
Q 022303          189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-HCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRV  267 (299)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  267 (299)
                      .....   ......+..++.++.++.+..+|..+++.+..... ....+...... +..++.++.+|.|.++|..+++.+
T Consensus       266 ~~~~~---~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~-~~~l~v~~~~g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          266 ELGSV---NDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY-NGNLVVGDSEGYLHWINVEDGRFV  341 (376)
T ss_dssp             CCCCE---EEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cCCCC---CCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE-CCEEEEEeCCCeEEEEECCCCcEE
Confidence            33322   23334567788888899999999999998776642 12222223332 357888899999999999999988


Q ss_pred             EEeecc
Q 022303          268 ATLRST  273 (299)
Q Consensus       268 ~~~~~~  273 (299)
                      ......
T Consensus       342 ~~~~~~  347 (376)
T 3q7m_A          342 AQQKVD  347 (376)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            877653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.53  E-value=8.7e-06  Score=73.94  Aligned_cols=200  Identities=9%  Similarity=-0.019  Sum_probs=117.8

Q ss_pred             hhhhccccceee-----cCc--eeeEEeeccccC--------e--eEEEecCC-EEEEEeCCC-------------cEEE
Q 022303           88 ELAMKHHRFALE-----EGR--IDIDQWKAHSVG--------V--DQCRMKRG-LILTGVGDK-------------VMRL  136 (299)
Q Consensus        88 ~~~~~~~~~~l~-----~g~--~~~~~~~~h~~~--------i--~~~~~~~~-~l~s~~~dg-------------~i~i  136 (299)
                      .+.++|+++.++     .|.  ..++.+.-.++.        +  ..+.|.|+ .|+.++.+.             .|++
T Consensus       133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~  212 (693)
T 3iuj_A          133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYF  212 (693)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEETTTEEEEEESSCCC-------CCCCEEEE
T ss_pred             EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEeCCCEEEEEEecCcccccccccCCCcEEEE
Confidence            457888888777     343  224443322221        2  23455544 677777664             3999


Q ss_pred             EecCCcee--EEEecCCC----ceeEEEEecCCCEEE-EEc----CCeEEEEecCCce---eeeeccCCccceeeeeccC
Q 022303          137 WSLEGYKC--VEEYSLPN----AASLVDFDFDESKIV-GLI----GTRICIWRRNGLR---SVFPSREGTFMKGLCMRYF  202 (299)
Q Consensus       137 wd~~~~~~--~~~~~~~~----~~~~~~~~~~~~~l~-~~~----d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~  202 (299)
                      |++.++..  ...+....    ....+.++||+++|+ ...    ...++++|+.++.   ..+........  ..+.+.
T Consensus       213 ~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~--~~~~~~  290 (693)
T 3iuj_A          213 HRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV--SLVDNK  290 (693)
T ss_dssp             EETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE--EEEEEE
T ss_pred             EECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE--EEEecc
Confidence            99887642  23333322    245689999999986 332    2489999987653   23333333222  125566


Q ss_pred             CCeEE-EecC---CCcEEEEEcCCcce--eeeccccCCceeEEEeCCC-CeEEEEeC-CC--cEEEEeCCCCceEEEeec
Q 022303          203 DPEAV-VGCE---DGTARVFDMYSRKC--SQIIRMHCAPVTSLSLSED-QLIISGSS-LG--SIAISGLSSDQRVATLRS  272 (299)
Q Consensus       203 ~~~l~-s~~~---d~~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~  272 (299)
                      +..++ ....   .+.|..+|+.++..  ...+..+...+.  .|+++ +.|+.... ++  .|++||+. +.....+..
T Consensus       291 g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~-g~~~~~l~~  367 (693)
T 3iuj_A          291 GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE-GKRVREVAL  367 (693)
T ss_dssp             TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT-SCEEEEECC
T ss_pred             CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC-CCeeEEeec
Confidence            66644 3333   36799999987654  234445554444  67776 66655554 44  68999987 444555543


Q ss_pred             cCCCCcEEEEEccCCCCeEEe
Q 022303          273 TDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       273 ~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      .... .+..+.++|+++.|+.
T Consensus       368 p~~~-~~~~~~~~~d~~~l~~  387 (693)
T 3iuj_A          368 PGLG-SVSGFNGKHDDPALYF  387 (693)
T ss_dssp             SSSS-EEEECCCCTTCSCEEE
T ss_pred             CCCc-eEEeeecCCCCCEEEE
Confidence            3322 6788888888876654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.52  E-value=1e-05  Score=67.67  Aligned_cols=151  Identities=7%  Similarity=0.040  Sum_probs=100.3

Q ss_pred             ecCCEEEEEeCCCcEEEEecCCceeEEEecCCC---------ceeEEEEe-cCCCEEEEEcCCeEEEEecCCceeeeecc
Q 022303          120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPN---------AASLVDFD-FDESKIVGLIGTRICIWRRNGLRSVFPSR  189 (299)
Q Consensus       120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~l~~~~d~~i~v~d~~~~~~~~~~~  189 (299)
                      ..++.++.++.++.|..+|.++++.+..+....         ........ .++..++++.++.|+.+|..+++......
T Consensus        51 v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           51 LADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             EETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            356688888999999999999999887776532         12222222 23444448899999999999886544332


Q ss_pred             CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCce-----eEEEeCCCCeEEEEeCCCcEEEEeCCCC
Q 022303          190 EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPV-----TSLSLSEDQLIISGSSLGSIAISGLSSD  264 (299)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i-----~~~~~~~~~~l~~~~~dg~i~iwd~~~~  264 (299)
                      ....... .....+..++.++.++.+..+|..+++.+..+.......     ...... +..++.++.++.|..+|..+|
T Consensus       131 ~~~~~~~-~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG  208 (376)
T 3q7m_A          131 VAGEALS-RPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQG  208 (376)
T ss_dssp             CSSCCCS-CCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEECCTTTEEEEEETTTC
T ss_pred             CCCceEc-CCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCC
Confidence            2211100 111235568888899999999999999887765322111     111121 356788888999999999999


Q ss_pred             ceEEEeec
Q 022303          265 QRVATLRS  272 (299)
Q Consensus       265 ~~~~~~~~  272 (299)
                      +.+.....
T Consensus       209 ~~~w~~~~  216 (376)
T 3q7m_A          209 QMIWQQRI  216 (376)
T ss_dssp             CEEEEEEC
T ss_pred             cEEEEEec
Confidence            98877653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.46  E-value=7.1e-06  Score=74.17  Aligned_cols=172  Identities=11%  Similarity=0.053  Sum_probs=112.5

Q ss_pred             cCCEEEEEeC------CCcEEEEecCCceeEEEecCCCce---------------------------------eEEEEec
Q 022303          121 KRGLILTGVG------DKVMRLWSLEGYKCVEEYSLPNAA---------------------------------SLVDFDF  161 (299)
Q Consensus       121 ~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~---------------------------------~~~~~~~  161 (299)
                      .++.++.++.      ++.|+.+|..+|+.+..+......                                 ..+++++
T Consensus       173 ~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~  252 (677)
T 1kb0_A          173 FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA  252 (677)
T ss_dssp             ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET
T ss_pred             ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC
Confidence            3555555553      799999999999999877642211                                 1367888


Q ss_pred             CCCEEE-EEcCC-------------------eEEEEecCCceeeeeccCC----------ccceeeeeccCC---CeEEE
Q 022303          162 DESKIV-GLIGT-------------------RICIWRRNGLRSVFPSREG----------TFMKGLCMRYFD---PEAVV  208 (299)
Q Consensus       162 ~~~~l~-~~~d~-------------------~i~v~d~~~~~~~~~~~~~----------~~~~~~~~~~~~---~~l~s  208 (299)
                      ++..++ ++.++                   .|..+|..+++........          ....+.....++   ..++.
T Consensus       253 ~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~  332 (677)
T 1kb0_A          253 ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILH  332 (677)
T ss_dssp             TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEE
T ss_pred             CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEE
Confidence            888877 66553                   5999999988754432111          001112222345   45888


Q ss_pred             ecCCCcEEEEEcCCcceeeeccccC-----------Cce------------------------eEEEeCCC-CeEEEEeC
Q 022303          209 GCEDGTARVFDMYSRKCSQIIRMHC-----------APV------------------------TSLSLSED-QLIISGSS  252 (299)
Q Consensus       209 ~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~i------------------------~~~~~~~~-~~l~~~~~  252 (299)
                      ++.+|.++++|..+|+.+..+....           .++                        ..++++|+ .++++...
T Consensus       333 ~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~  412 (677)
T 1kb0_A          333 APKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQ  412 (677)
T ss_dssp             CCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEE
T ss_pred             ECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeCh
Confidence            9999999999999999876654211           011                        14678887 66666432


Q ss_pred             -------------------------------------------CCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCC
Q 022303          253 -------------------------------------------LGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLH  289 (299)
Q Consensus       253 -------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  289 (299)
                                                                 .|.|..||+.+++.+.++....   ++.+..+..++.
T Consensus       413 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~---~~~~g~~~~~g~  489 (677)
T 1kb0_A          413 NVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS---PWNGGTLTTAGN  489 (677)
T ss_dssp             ECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS---SCCCCEEEETTT
T ss_pred             hcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC---CCcCcceEeCCC
Confidence                                                       2789999999999888876443   344444555666


Q ss_pred             eEEeee
Q 022303          290 MLFFLC  295 (299)
Q Consensus       290 ~l~s~s  295 (299)
                      .++.++
T Consensus       490 ~v~~g~  495 (677)
T 1kb0_A          490 VVFQGT  495 (677)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            666654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.41  E-value=2.4e-05  Score=68.30  Aligned_cols=168  Identities=8%  Similarity=-0.002  Sum_probs=112.1

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCC--CceeEEEE-e-cCCCEEE-EE------------------cCCeEEEEecC
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLP--NAASLVDF-D-FDESKIV-GL------------------IGTRICIWRRN  180 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~-~-~~~~~l~-~~------------------~d~~i~v~d~~  180 (299)
                      .+++...+..|.+.|+.+.++...+..+  .....+++ + |++++++ ++                  .++.+.+.|..
T Consensus       104 lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~  183 (595)
T 1fwx_A          104 LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD  183 (595)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETT
T ss_pred             EEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECC
Confidence            3445555678999999999988855543  34445777 5 8999988 43                  13489999999


Q ss_pred             CceeeeeccCCccceeeeeccCCCeEEEecCCC--------------------------------------cEEEEEcCC
Q 022303          181 GLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDG--------------------------------------TARVFDMYS  222 (299)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~--------------------------------------~i~iwd~~~  222 (299)
                      +.+...+..-+.....+++++++.++++.+.+.                                      .|.+.|.++
T Consensus       184 t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~  263 (595)
T 1fwx_A          184 KWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRK  263 (595)
T ss_dssp             TTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSG
T ss_pred             CCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcc
Confidence            877555443322233457888888866655432                                      477777776


Q ss_pred             --cce-eeeccccCCceeEEEeCCC-CeEEEE-eCCCcEEEEeCCCCc------------eEEEeeccCCCCcEEEEEcc
Q 022303          223 --RKC-SQIIRMHCAPVTSLSLSED-QLIISG-SSLGSIAISGLSSDQ------------RVATLRSTDCTGHIICLMYP  285 (299)
Q Consensus       223 --~~~-~~~~~~~~~~i~~~~~~~~-~~l~~~-~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~i~~~~~s  285 (299)
                        ++. +..+.. .....++.++|| ++++++ ..+.+|.++|+.+.+            .+.++....   ....++|+
T Consensus       264 ~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~---gP~h~aF~  339 (595)
T 1fwx_A          264 EASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL---GPLHTAFD  339 (595)
T ss_dssp             GGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS---CEEEEEEC
T ss_pred             cCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC---CcceEEEC
Confidence              444 444433 334678999999 655554 468999999998653            334443222   68999999


Q ss_pred             CCCCeEEeeec
Q 022303          286 QFLHMLFFLCF  296 (299)
Q Consensus       286 ~~g~~l~s~s~  296 (299)
                      |+| ++.+..+
T Consensus       340 ~dG-~aY~t~~  349 (595)
T 1fwx_A          340 GRG-NAYTSLF  349 (595)
T ss_dssp             TTS-EEEEEET
T ss_pred             CCC-eEEEEEe
Confidence            999 7666554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.39  E-value=0.0003  Score=55.70  Aligned_cols=175  Identities=9%  Similarity=0.026  Sum_probs=108.4

Q ss_pred             cCeeEEEe-c-CCE-EEEEeCCCcEEEEecCCceeEEEecCC-CceeEEEEecCCCEEE-EEc---CCeEEEEecCCce-
Q 022303          113 VGVDQCRM-K-RGL-ILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLI---GTRICIWRRNGLR-  183 (299)
Q Consensus       113 ~~i~~~~~-~-~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~---d~~i~v~d~~~~~-  183 (299)
                      .....+++ + ++. .++-...+.|.+++............. .....++++|++..|+ +..   .+.|..+++.... 
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~  158 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence            35567777 3 344 444455678999998743322222222 3455699999766655 543   3688888887543 


Q ss_pred             eeeeccCCccceeeeeccCCCeE-EEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022303          184 SVFPSREGTFMKGLCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLS  262 (299)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~  262 (299)
                      ..+..........+++.+++..| ++-...+.|.++|.........+.. ......++...+.++++....+.|..+|..
T Consensus       159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEeCCEEEEEECCCCeEEEEeCC
Confidence            22221111223356888877775 4555678899999975443333322 233567776533555555567899999999


Q ss_pred             CCceEEEeeccCCCCcEEEEEccCCCC
Q 022303          263 SDQRVATLRSTDCTGHIICLMYPQFLH  289 (299)
Q Consensus       263 ~~~~~~~~~~~~~~~~i~~~~~s~~g~  289 (299)
                      +++.+.++...... ....+++.|++.
T Consensus       238 ~g~~~~~i~~g~~~-~p~gi~~~~~~~  263 (267)
T 1npe_A          238 ISKEMDTFHPHKQT-RLYGITIALSQC  263 (267)
T ss_dssp             TTEEEEEECCSSCC-CCCCEEEECSCC
T ss_pred             CCCceEEEcccccc-ccceeeecCccC
Confidence            99998888654321 467888888864

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.32  E-value=5.9e-05  Score=68.36  Aligned_cols=151  Identities=7%  Similarity=0.042  Sum_probs=99.2

Q ss_pred             EecCCEEEEEeCCCcEEEEecCCceeEEEecCC-C-----ceeE-EEEecCCCEEEEE------cCCeEEEEecCCceee
Q 022303          119 RMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLP-N-----AASL-VDFDFDESKIVGL------IGTRICIWRRNGLRSV  185 (299)
Q Consensus       119 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~-----~~~~-~~~~~~~~~l~~~------~d~~i~v~d~~~~~~~  185 (299)
                      ...++.++.++.|+.|..+|..+|+.+..+... .     .... ..+ .++..++++      .++.|+.||..+++..
T Consensus       118 ~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~  196 (689)
T 1yiq_A          118 AVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV-VNGKVVIGNGGAEFGVRGYVTAYDAETGKEA  196 (689)
T ss_dssp             EEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             EEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE-ECCEEEEEeCCCccCCCCEEEEEECCCCcEE
Confidence            345668899999999999999999998877653 1     1111 111 145555543      2689999999988754


Q ss_pred             eeccCC--------------------------------ccceeeeeccCCCeEEEecCCCc-------------------
Q 022303          186 FPSREG--------------------------------TFMKGLCMRYFDPEAVVGCEDGT-------------------  214 (299)
Q Consensus       186 ~~~~~~--------------------------------~~~~~~~~~~~~~~l~s~~~d~~-------------------  214 (299)
                      ......                                ......++.+....++.+..++.                   
T Consensus       197 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~  276 (689)
T 1yiq_A          197 WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSS  276 (689)
T ss_dssp             EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred             EEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence            432110                                00012355566677888877653                   


Q ss_pred             EEEEEcCCcceeeeccc--cC-------Ccee--EEEeCCC--CeEEEEeCCCcEEEEeCCCCceEEEe
Q 022303          215 ARVFDMYSRKCSQIIRM--HC-------APVT--SLSLSED--QLIISGSSLGSIAISGLSSDQRVATL  270 (299)
Q Consensus       215 i~iwd~~~~~~~~~~~~--~~-------~~i~--~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~  270 (299)
                      |..+|.++|+.+..++.  |.       .++.  .+.+...  ..++.++.+|.++++|..+|+.+...
T Consensus       277 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  345 (689)
T 1yiq_A          277 IVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAK  345 (689)
T ss_dssp             EEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccc
Confidence            99999999999887753  21       1111  2222111  37889999999999999999988544

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.30  E-value=3.9e-05  Score=64.99  Aligned_cols=182  Identities=9%  Similarity=0.041  Sum_probs=118.5

Q ss_pred             hhhhccccceeecC----ceeeEEeeccccCeeE-EEe-------cC--CEEEEEeCCCcEEEEecCCceeEEE----ec
Q 022303           88 ELAMKHHRFALEEG----RIDIDQWKAHSVGVDQ-CRM-------KR--GLILTGVGDKVMRLWSLEGYKCVEE----YS  149 (299)
Q Consensus        88 ~~~~~~~~~~l~~g----~~~~~~~~~h~~~i~~-~~~-------~~--~~l~s~~~dg~i~iwd~~~~~~~~~----~~  149 (299)
                      .+.++++++.+.-.    ...+..+...+..+.. +..       ++  ..+++.+.||.+.+.+..+++....    +.
T Consensus       181 ~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~  260 (426)
T 3c75_H          181 MNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFH  260 (426)
T ss_dssp             GSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCS
T ss_pred             eEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeec
Confidence            45667777554432    2235555444443322 221       22  2567778899988888876665532    22


Q ss_pred             CCCcee--EEEEecCCCEEE-EEcCCeEEEEecCCceeee----ecc------CCc---cceeeeeccCCCeEEEecC--
Q 022303          150 LPNAAS--LVDFDFDESKIV-GLIGTRICIWRRNGLRSVF----PSR------EGT---FMKGLCMRYFDPEAVVGCE--  211 (299)
Q Consensus       150 ~~~~~~--~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~----~~~------~~~---~~~~~~~~~~~~~l~s~~~--  211 (299)
                      .....+  ...+.+++..++ .+..+.+.+.|..+.....    ...      .+.   ....+++++++..+++...  
T Consensus       261 v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~  340 (426)
T 3c75_H          261 TEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQR  340 (426)
T ss_dssp             CTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC
T ss_pred             cCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccc
Confidence            222222  267788888877 7778899999987543211    100      000   0012578888888665432  


Q ss_pred             --------CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-C-eEEEEe-CCCcEEEEeCCCCceEEEe
Q 022303          212 --------DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGS-SLGSIAISGLSSDQRVATL  270 (299)
Q Consensus       212 --------d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~-~dg~i~iwd~~~~~~~~~~  270 (299)
                              ++.|.++|..+.+.+..+.. ......++|+|| + +++++. .++.|.++|+.+++.++++
T Consensus       341 ~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          341 DEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             CTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             ccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence                    35799999999999998864 335899999999 7 787777 5999999999999999987

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.28  E-value=5.1e-05  Score=59.93  Aligned_cols=145  Identities=4%  Similarity=-0.060  Sum_probs=97.0

Q ss_pred             EEecCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCC----
Q 022303          118 CRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREG----  191 (299)
Q Consensus       118 ~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~----  191 (299)
                      +.+.++ +.++.-.++.+.++|..+.+.+.++... ...-..++++++.++ +..++.|.++|..+.+..-...-+    
T Consensus        71 i~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~  149 (266)
T 2iwa_A           71 LTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGH  149 (266)
T ss_dssp             EEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTE
T ss_pred             EEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCc
Confidence            444455 4444556789999999999999988754 122244666887777 666789999999886532221111    


Q ss_pred             cc--ceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc-------------CCceeEEEeCCC--CeEEEEeCCC
Q 022303          192 TF--MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH-------------CAPVTSLSLSED--QLIISGSSLG  254 (299)
Q Consensus       192 ~~--~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------~~~i~~~~~~~~--~~l~~~~~dg  254 (299)
                      ..  ...+.+. ++..++....++.|.+.|..+++.+..+...             ....+.|+++|+  .+++++...+
T Consensus       150 p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~  228 (266)
T 2iwa_A          150 RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP  228 (266)
T ss_dssp             ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred             ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence            11  1122333 3322444446789999999999988877531             135689999998  5777777889


Q ss_pred             cEEEEeCCCC
Q 022303          255 SIAISGLSSD  264 (299)
Q Consensus       255 ~i~iwd~~~~  264 (299)
                      .|...++...
T Consensus       229 ~v~~i~l~~~  238 (266)
T 2iwa_A          229 KLFEIKLHLV  238 (266)
T ss_dssp             EEEEEEEEEC
T ss_pred             eEEEEEEecc
Confidence            9998887654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.26  E-value=7e-05  Score=67.63  Aligned_cols=175  Identities=10%  Similarity=0.121  Sum_probs=107.6

Q ss_pred             EEe-c-CCEEEEEeCCC-------------------cEEEEecCCceeEEEecCC----------CceeEEEEecCCC--
Q 022303          118 CRM-K-RGLILTGVGDK-------------------VMRLWSLEGYKCVEEYSLP----------NAASLVDFDFDES--  164 (299)
Q Consensus       118 ~~~-~-~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~--  164 (299)
                      +.+ + .++++.++.++                   .|..+|..+|+.+..++..          .+.+...+..+++  
T Consensus       235 ~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~  314 (668)
T 1kv9_A          235 MAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPR  314 (668)
T ss_dssp             EEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE
T ss_pred             eEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEE
Confidence            455 3 34777777666                   3999999999999888742          2223344445665  


Q ss_pred             -EEE-EEcCCeEEEEecCCceeeeeccCCcc-------------------------------------ceeeeeccCCCe
Q 022303          165 -KIV-GLIGTRICIWRRNGLRSVFPSREGTF-------------------------------------MKGLCMRYFDPE  205 (299)
Q Consensus       165 -~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~  205 (299)
                       .++ ++.+|.++++|..+++.+........                                     -..+++++....
T Consensus       315 ~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~  394 (668)
T 1kv9_A          315 KVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGL  394 (668)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTE
T ss_pred             EEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCE
Confidence             455 88999999999988764421110000                                     001233443333


Q ss_pred             EEE------------------------------------ecCCCcEEEEEcCCcceeeeccccCCceeEEEeC-CCCeEE
Q 022303          206 AVV------------------------------------GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS-EDQLII  248 (299)
Q Consensus       206 l~s------------------------------------~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~  248 (299)
                      ++.                                    ...+|.|..||+.+++.+....... +.....+. .+.+++
T Consensus       395 ~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf  473 (668)
T 1kv9_A          395 VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVF  473 (668)
T ss_dssp             EEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEE
T ss_pred             EEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEE
Confidence            222                                    1234889999999999987775332 23222222 347888


Q ss_pred             EEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCC-eEEee
Q 022303          249 SGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLH-MLFFL  294 (299)
Q Consensus       249 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~s~  294 (299)
                      +++.|+.|+.||.++|+.+..++..... .-.-+.+..+|+ |++.+
T Consensus       474 ~g~~dg~l~a~d~~tG~~l~~~~~~~~~-~~~p~~~~~~G~~yva~~  519 (668)
T 1kv9_A          474 QGTAAGQMHAYSADKGEALWQFEAQSGI-VAAPMTFELAGRQYVAIM  519 (668)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEEEEEE
T ss_pred             EECCcccchhhhhhcChhheEecCCCCc-ccCceEEEECCEEEEEEE
Confidence            8999999999999999999888765431 111223345666 44443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.24  E-value=0.00014  Score=64.41  Aligned_cols=159  Identities=10%  Similarity=-0.044  Sum_probs=99.0

Q ss_pred             cEEEEecCCceeEEEecCCC----------ceeEEEEecCCC---EEE-EEcCCeEEEEecCCceeeeeccCCc-c----
Q 022303          133 VMRLWSLEGYKCVEEYSLPN----------AASLVDFDFDES---KIV-GLIGTRICIWRRNGLRSVFPSREGT-F----  193 (299)
Q Consensus       133 ~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~---~l~-~~~d~~i~v~d~~~~~~~~~~~~~~-~----  193 (299)
                      .|..+|..+|+.+..++...          ..+.+....+++   .++ ++.+|.++++|..+++.+....... .    
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~  352 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence            69999999999988876321          122233335674   455 8889999999998876443221110 0    


Q ss_pred             -----------------------------------ceeeeeccCCCeEEEec----------------------------
Q 022303          194 -----------------------------------MKGLCMRYFDPEAVVGC----------------------------  210 (299)
Q Consensus       194 -----------------------------------~~~~~~~~~~~~l~s~~----------------------------  210 (299)
                                                         -...++++....++...                            
T Consensus       353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  432 (571)
T 2ad6_A          353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY  432 (571)
T ss_dssp             EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence                                               00123444444443321                            


Q ss_pred             ---------CCCcEEEEEcCCcceeeeccccCCceeEEEeC-CCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEE
Q 022303          211 ---------EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS-EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHII  280 (299)
Q Consensus       211 ---------~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~  280 (299)
                               .++.+..||+.+++.+..+... .++....+. .+..++.++.||.|+.+|.++|+.+.+++..... .-.
T Consensus       433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~-~~~  510 (571)
T 2ad6_A          433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG-IGS  510 (571)
T ss_dssp             ECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSC
T ss_pred             cCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCc-Eee
Confidence                     3578999999999988777532 222222222 3467777999999999999999999888755431 111


Q ss_pred             EEEccCCCCeEEe
Q 022303          281 CLMYPQFLHMLFF  293 (299)
Q Consensus       281 ~~~~s~~g~~l~s  293 (299)
                      -+.+..+|+.+++
T Consensus       511 p~~~~~~G~~yv~  523 (571)
T 2ad6_A          511 PMTYSFKGKQYIG  523 (571)
T ss_dssp             CEEEEETTEEEEE
T ss_pred             eEEEEECCEEEEE
Confidence            2335567875554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.24  E-value=9.9e-05  Score=60.90  Aligned_cols=151  Identities=14%  Similarity=0.072  Sum_probs=90.3

Q ss_pred             eEEEecCCCceeEEEEecCCCEEEEE---cCCeEEEEecCCce-eeeec----cCCcc--ceeeeeccCCCeEEEecC--
Q 022303          144 CVEEYSLPNAASLVDFDFDESKIVGL---IGTRICIWRRNGLR-SVFPS----REGTF--MKGLCMRYFDPEAVVGCE--  211 (299)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~l~~~---~d~~i~v~d~~~~~-~~~~~----~~~~~--~~~~~~~~~~~~l~s~~~--  211 (299)
                      .+..+.  ..+..++++++++.+++.   .++.+.+|.+.++. ..+..    ..++.  ...+++.+++..+++-..  
T Consensus        11 ~v~~~~--~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~   88 (343)
T 2qe8_A           11 VVAELS--LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ   88 (343)
T ss_dssp             EEEEES--SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHH
T ss_pred             EEEEcC--CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCC
Confidence            344443  445569999999887743   23424444443332 21111    11111  123456666544443322  


Q ss_pred             ---CCcEEEEEcCCcceeeeccc------cCCceeEEEeCCC-C-eEEEEe---CCCcEEEEeCCCCceEEEeeccCC--
Q 022303          212 ---DGTARVFDMYSRKCSQIIRM------HCAPVTSLSLSED-Q-LIISGS---SLGSIAISGLSSDQRVATLRSTDC--  275 (299)
Q Consensus       212 ---d~~i~iwd~~~~~~~~~~~~------~~~~i~~~~~~~~-~-~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~--  275 (299)
                         ++.|.+||+.+++.+..+..      +...+..++++++ . .+++..   .++.|.+||+.+++..+.+..|..  
T Consensus        89 ~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~  168 (343)
T 2qe8_A           89 SKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIA  168 (343)
T ss_dssp             HTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTS
T ss_pred             cCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccc
Confidence               57899999998887665542      2235689999975 4 445554   578999999988877665533210  


Q ss_pred             -------------------------CCcEEEEEccCCCCeEEeeec
Q 022303          276 -------------------------TGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       276 -------------------------~~~i~~~~~s~~g~~l~s~s~  296 (299)
                                               ...+..++|+|+|+.|+.+..
T Consensus       169 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~  214 (343)
T 2qe8_A          169 PEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM  214 (343)
T ss_dssp             CCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES
T ss_pred             ccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC
Confidence                                     013688999999998887754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.21  E-value=0.00014  Score=56.84  Aligned_cols=149  Identities=13%  Similarity=0.038  Sum_probs=93.8

Q ss_pred             eeEEEecCCCceeE--EEEecCCCEEE-EEcCC--eEEEEecCCceeeeeccCCccceeeeeccCCCeEEE-ecCCCcEE
Q 022303          143 KCVEEYSLPNAASL--VDFDFDESKIV-GLIGT--RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVV-GCEDGTAR  216 (299)
Q Consensus       143 ~~~~~~~~~~~~~~--~~~~~~~~~l~-~~~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~  216 (299)
                      +.+.++........  +.|+ ++.+.. .+.+|  .|+++|+.+++...............+.+.+..++. .-.++.+.
T Consensus        32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~  110 (262)
T 3nol_A           32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGF  110 (262)
T ss_dssp             EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEE
Confidence            45667765554433  8888 554444 44454  899999998864433322222223345566777554 44688999


Q ss_pred             EEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCC---CcEEEEEccCCCCeEEe
Q 022303          217 VFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCT---GHIICLMYPQFLHMLFF  293 (299)
Q Consensus       217 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~i~~~~~s~~g~~l~s  293 (299)
                      +||..+.+.+.++.... .-..++.. ++.|+.+..++.|.++|..+.+.+.++......   ..++.+.|. +|+ |.+
T Consensus       111 v~D~~t~~~~~ti~~~~-eG~glt~d-g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lya  186 (262)
T 3nol_A          111 VWNIRNLRQVRSFNYDG-EGWGLTHN-DQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFA  186 (262)
T ss_dssp             EEETTTCCEEEEEECSS-CCCCEEEC-SSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEE
T ss_pred             EEECccCcEEEEEECCC-CceEEecC-CCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEE
Confidence            99999999999886432 22344432 245555555788999999999998888664221   145567776 664 445


Q ss_pred             eec
Q 022303          294 LCF  296 (299)
Q Consensus       294 ~s~  296 (299)
                      +.+
T Consensus       187 n~w  189 (262)
T 3nol_A          187 NVW  189 (262)
T ss_dssp             EET
T ss_pred             EEc
Confidence            444

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.19  E-value=0.00019  Score=63.62  Aligned_cols=79  Identities=15%  Similarity=0.111  Sum_probs=54.0

Q ss_pred             CCcEEEEEcCCcceeeeccccCCceeEEE-eCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCe
Q 022303          212 DGTARVFDMYSRKCSQIIRMHCAPVTSLS-LSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHM  290 (299)
Q Consensus       212 d~~i~iwd~~~~~~~~~~~~~~~~i~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  290 (299)
                      +|.|..||+.+++.+....... ++..-. ...+.+++.++.|+.++.||.++|+.+.+++..... .-.-+.+..+|+.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~-~a~P~~y~~~G~q  542 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGI-VSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEE
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCc-ccCceEEEECCEE
Confidence            6789999999999887765322 222111 113467888999999999999999999998765531 1112556678874


Q ss_pred             EE
Q 022303          291 LF  292 (299)
Q Consensus       291 l~  292 (299)
                      .+
T Consensus       543 Yv  544 (582)
T 1flg_A          543 YL  544 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.11  E-value=0.002  Score=50.87  Aligned_cols=177  Identities=10%  Similarity=-0.025  Sum_probs=105.2

Q ss_pred             cCeeEEEe-c-CC-EEEEEeCCCcEEEEecCCceeEEEecCC-CceeEEEEecCCCEEE-E-EcCCeEEEEecCCce-ee
Q 022303          113 VGVDQCRM-K-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-G-LIGTRICIWRRNGLR-SV  185 (299)
Q Consensus       113 ~~i~~~~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~-~~d~~i~v~d~~~~~-~~  185 (299)
                      .....+++ + ++ ++++-..++.|..++.........+... ..+..+++++++..++ + ...+.|.+++..+.. ..
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            34567777 3 34 4445556789999998866544333322 3455699999776665 4 346799999987643 22


Q ss_pred             eeccCCccceeeeeccCCCeEEEecC---CCcEEEEEcCCcceeeecc-ccCCceeEEEeCCC-C-eEEEEeCCCcEEEE
Q 022303          186 FPSREGTFMKGLCMRYFDPEAVVGCE---DGTARVFDMYSRKCSQIIR-MHCAPVTSLSLSED-Q-LIISGSSLGSIAIS  259 (299)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~-~-~l~~~~~dg~i~iw  259 (299)
                      +..........+++.+.+..++.+..   .+.|..+++.. +....+. ........++++++ . ++++-...+.|.++
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~  194 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL  194 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence            21111122334678887666555443   46788888763 3333221 22345789999986 5 44555567899999


Q ss_pred             eCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          260 GLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       260 d~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      |+........+... .  ....++..  +..|..+.
T Consensus       195 ~~~g~~~~~~~~~~-~--~P~gi~~d--~~~lyva~  225 (267)
T 1npe_A          195 NPAQPGRRKVLEGL-Q--YPFAVTSY--GKNLYYTD  225 (267)
T ss_dssp             ETTEEEEEEEEECC-C--SEEEEEEE--TTEEEEEE
T ss_pred             ecCCCceEEEecCC-C--CceEEEEe--CCEEEEEE
Confidence            99754433333322 2  45667654  44555444

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.09  E-value=0.00027  Score=55.36  Aligned_cols=148  Identities=7%  Similarity=-0.062  Sum_probs=94.2

Q ss_pred             eeEEEecCCCceeE--EEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEE-EecCCCcEEEE
Q 022303          143 KCVEEYSLPNAASL--VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVF  218 (299)
Q Consensus       143 ~~~~~~~~~~~~~~--~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iw  218 (299)
                      +.+.++........  +.|+. +.+.. .+.+|.|+++|+.+++..... .........+.+.+..++ ..-.++.+.+|
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~  121 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTW  121 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEE
T ss_pred             EEEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEE
Confidence            55667765544433  77763 33333 666789999999988643332 222222234555666644 44568899999


Q ss_pred             EcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCC---CcEEEEEccCCCCeEEeee
Q 022303          219 DMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCT---GHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       219 d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~i~~~~~s~~g~~l~s~s  295 (299)
                      |..+.+.+.++... ..-..++.. ++.|+.+..++.|.++|..+.+.+.++......   ..++.+.|. +|+ |.++.
T Consensus       122 D~~Tl~~~~ti~~~-~eGwGLt~D-g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanv  197 (268)
T 3nok_A          122 SGMPPQRERTTRYS-GEGWGLCYW-NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANI  197 (268)
T ss_dssp             ETTTTEEEEEEECS-SCCCCEEEE-TTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEE
T ss_pred             ECCcCcEEEEEeCC-CceeEEecC-CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEE
Confidence            99999999988643 223455532 255666667899999999999998888654321   145667776 664 44544


Q ss_pred             c
Q 022303          296 F  296 (299)
Q Consensus       296 ~  296 (299)
                      +
T Consensus       198 w  198 (268)
T 3nok_A          198 W  198 (268)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.08  E-value=0.00049  Score=61.09  Aligned_cols=80  Identities=8%  Similarity=0.037  Sum_probs=53.3

Q ss_pred             CCCcEEEEEcCCcceeeeccccCCcee-E-EEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCC
Q 022303          211 EDGTARVFDMYSRKCSQIIRMHCAPVT-S-LSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL  288 (299)
Q Consensus       211 ~d~~i~iwd~~~~~~~~~~~~~~~~i~-~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g  288 (299)
                      ..|.+..||+.+++.+..... ..+.. . +. ..+.+++.++.|+.|+.||.++|+.+.+++..... ...-+.+..+|
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~-tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~-~~~P~~y~~~G  527 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKME-RFAVWGGTMA-TAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA-IGYPMTYTHKG  527 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEE-SSCCCSBCEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETT
T ss_pred             CcCeEEEEECCCCCEEeEecC-CCCccCcceE-ecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc-EeccEEEEeCC
Confidence            357899999999998877642 22221 1 22 13367777999999999999999999888755431 11224455677


Q ss_pred             C-eEEe
Q 022303          289 H-MLFF  293 (299)
Q Consensus       289 ~-~l~s  293 (299)
                      + |+++
T Consensus       528 ~qyv~~  533 (599)
T 1w6s_A          528 TQYVAI  533 (599)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            6 4443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.08  E-value=0.0021  Score=50.31  Aligned_cols=186  Identities=9%  Similarity=0.031  Sum_probs=118.7

Q ss_pred             EeeccccCeeEEEe-cC-C-EEEEEeCCCcEEEEecCCceeEEEecCC--CceeEEEEecCCCEEEEE-cCCeEEEEecC
Q 022303          107 QWKAHSVGVDQCRM-KR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLP--NAASLVDFDFDESKIVGL-IGTRICIWRRN  180 (299)
Q Consensus       107 ~~~~h~~~i~~~~~-~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~-~d~~i~v~d~~  180 (299)
                      .+.+-.+.+..+++ ++ + ++++...++.|...|.. ++.+..+...  ...-.+++.+++.++++. .++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            44566678999999 44 3 55567788999999988 8888877543  233337888888765543 56788998876


Q ss_pred             Ccee-----eee-----ccCCccceeeeeccCCCeEEEecCCCcEEEEEcC---Ccceeeecc-------ccCCceeEEE
Q 022303          181 GLRS-----VFP-----SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY---SRKCSQIIR-------MHCAPVTSLS  240 (299)
Q Consensus       181 ~~~~-----~~~-----~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~-------~~~~~i~~~~  240 (299)
                      ....     ...     ...+.....+++.+.+..|+++.+.....+|..+   ....+..+.       .....+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            4431     111     1111222357888888887777665555555543   111111110       1233578999


Q ss_pred             eCCC--CeEEEEeCCCcEEEEeCCCCceEEEeeccCC-------CCcEEEEEccCCCCeEEee
Q 022303          241 LSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDC-------TGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       241 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~i~~~~~s~~g~~l~s~  294 (299)
                      ++|.  ++++.......|..+|.. ++.+..+.-..+       ....-.|+|+++|++.+++
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs  241 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS  241 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence            9987  577777778889999975 776666644321       0156899999999866653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.05  E-value=0.0025  Score=52.10  Aligned_cols=169  Identities=14%  Similarity=0.117  Sum_probs=105.8

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEec----CCCE--EE--EEc---CCeEEEEecC--Cce-eeeec-
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDF----DESK--IV--GLI---GTRICIWRRN--GLR-SVFPS-  188 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~--l~--~~~---d~~i~v~d~~--~~~-~~~~~-  188 (299)
                      +++.....+-+.+||+ +|+.++.+.. .....+.+-|    .++.  ++  ...   +++|.+|++.  +.. ..... 
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~  119 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP  119 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc
Confidence            6777778889999999 7999988864 2233344433    3332  33  333   4689999774  322 11111 


Q ss_pred             --c--CC-ccceeeee--ccCCC--eEEEecCCCcEEEEEcC-------CcceeeeccccCCceeEEEeCCC-CeEEEEe
Q 022303          189 --R--EG-TFMKGLCM--RYFDP--EAVVGCEDGTARVFDMY-------SRKCSQIIRMHCAPVTSLSLSED-QLIISGS  251 (299)
Q Consensus       189 --~--~~-~~~~~~~~--~~~~~--~l~s~~~d~~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~  251 (299)
                        .  .. .....+|+  ++...  ++++...+|.+..|++.       +.+.++++.. ...+-.+...+. ..|..+-
T Consensus       120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~e  198 (355)
T 3amr_A          120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAE  198 (355)
T ss_dssp             TSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEE
T ss_pred             ccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEec
Confidence              0  11 22223566  55433  47778888999999883       3456777754 456888888887 8999999


Q ss_pred             CCCcEEEEeCC-----CCceEEEeeccCCCCcEEEEEc--cCCCC-eEEeee
Q 022303          252 SLGSIAISGLS-----SDQRVATLRSTDCTGHIICLMY--PQFLH-MLFFLC  295 (299)
Q Consensus       252 ~dg~i~iwd~~-----~~~~~~~~~~~~~~~~i~~~~~--s~~g~-~l~s~s  295 (299)
                      ++.-|..++.+     +++.+..+....-...+..|++  .++|+ ||+++|
T Consensus       199 Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs  250 (355)
T 3amr_A          199 EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS  250 (355)
T ss_dssp             TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred             ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence            98777777754     3455655532211115788887  56666 777766

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.03  E-value=0.00075  Score=59.73  Aligned_cols=152  Identities=7%  Similarity=-0.099  Sum_probs=95.8

Q ss_pred             EecCCEEEEEeCCCcEEEEecCCceeEEEecCCC-----ceeE-EEEecCCCEEEEEc------CCeEEEEecCCceeee
Q 022303          119 RMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPN-----AASL-VDFDFDESKIVGLI------GTRICIWRRNGLRSVF  186 (299)
Q Consensus       119 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~l~~~~------d~~i~v~d~~~~~~~~  186 (299)
                      ...++.++.++.|+.+..+|..+|+.+..+....     .... ..+. ++..++++.      ++.|+.+|..+++...
T Consensus       112 ~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  190 (571)
T 2ad6_A          112 AYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKW  190 (571)
T ss_dssp             EEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             EEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence            3456688888999999999999999988776443     1111 1121 444444554      7899999999886544


Q ss_pred             eccCCccc---------------------------------------eeeeeccCCCeEEEecCC---------------
Q 022303          187 PSREGTFM---------------------------------------KGLCMRYFDPEAVVGCED---------------  212 (299)
Q Consensus       187 ~~~~~~~~---------------------------------------~~~~~~~~~~~l~s~~~d---------------  212 (299)
                      ........                                       ...++.+....++.+..+               
T Consensus       191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y  270 (571)
T 2ad6_A          191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW  270 (571)
T ss_dssp             EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred             EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence            32211100                                       012333344455555432               


Q ss_pred             -CcEEEEEcCCcceeeecccc--C--------CceeEEEeCCC-C---eEEEEeCCCcEEEEeCCCCceEEEeec
Q 022303          213 -GTARVFDMYSRKCSQIIRMH--C--------APVTSLSLSED-Q---LIISGSSLGSIAISGLSSDQRVATLRS  272 (299)
Q Consensus       213 -~~i~iwd~~~~~~~~~~~~~--~--------~~i~~~~~~~~-~---~l~~~~~dg~i~iwd~~~~~~~~~~~~  272 (299)
                       +.|..+|.++++.+..++..  .        .++. +....+ +   .++.++.+|.+.++|..+|+.+.....
T Consensus       271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~  344 (571)
T 2ad6_A          271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV  344 (571)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence             35999999999998777522  1        2221 111123 2   577888999999999999998877653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.03  E-value=0.0027  Score=58.52  Aligned_cols=180  Identities=11%  Similarity=0.016  Sum_probs=112.8

Q ss_pred             cCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEec-------CCCceeEEEEecCCCEEEEEcCCeEEEEecCCcee
Q 022303          113 VGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYS-------LPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRS  184 (299)
Q Consensus       113 ~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~  184 (299)
                      ..|.++.. +++.|..|+.++-|..++..+.+......       ....+.++..++++++-+|+.++.+..|+..+...
T Consensus       310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~  389 (795)
T 4a2l_A          310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF  389 (795)
T ss_dssp             SCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE
T ss_pred             CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE
Confidence            56888877 45588888888889999877654332211       12234457778888877799888999999887642


Q ss_pred             e-eeccC------Cccceeeeecc--CCCeEEEecCCCcEEEEEcCCcceeeecc----ccCCceeEEEeCCCCeEEEEe
Q 022303          185 V-FPSRE------GTFMKGLCMRY--FDPEAVVGCEDGTARVFDMYSRKCSQIIR----MHCAPVTSLSLSEDQLIISGS  251 (299)
Q Consensus       185 ~-~~~~~------~~~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~i~~~~~~~~~~l~~~~  251 (299)
                      . +....      -....+.++..  .+..|..|..++-+..+|..+++......    .....|.++...++..|..|+
T Consensus       390 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt  469 (795)
T 4a2l_A          390 TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT  469 (795)
T ss_dssp             EEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE
T ss_pred             EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe
Confidence            2 21110      01112334433  33327778887789999998766433221    124568899888773345555


Q ss_pred             CCCcEEEEeCCCCceEEEeecc-----CCCCcEEEEEccCCCCeEEee
Q 022303          252 SLGSIAISGLSSDQRVATLRST-----DCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       252 ~dg~i~iwd~~~~~~~~~~~~~-----~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      .+ -|.+||..+++.. .+...     .....|.++..+++|.+.+..
T Consensus       470 ~~-Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt  515 (795)
T 4a2l_A          470 LS-ALVRFNPEQRSFT-TIEKEKDGTPVVSKQITTLFRDSHKRLWIGG  515 (795)
T ss_dssp             SS-CEEEEETTTTEEE-ECCBCTTCCBCCCCCEEEEEECTTCCEEEEE
T ss_pred             cC-ceeEEeCCCCeEE-EccccccccccCCceEEEEEECCCCCEEEEe
Confidence            54 5999998876543 23211     001279999999999876654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.02  E-value=0.0023  Score=59.02  Aligned_cols=178  Identities=10%  Similarity=0.070  Sum_probs=115.1

Q ss_pred             cCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecC--------CCceeEEEEecCCCEEEEEcCCeEEEEecCCce
Q 022303          113 VGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSL--------PNAASLVDFDFDESKIVGLIGTRICIWRRNGLR  183 (299)
Q Consensus       113 ~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~  183 (299)
                      ..|.++.. +++.|..|+.+ -|.+||..+++.......        ...+.++..++++.+-+|+.++-|..|+..+..
T Consensus       263 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~  341 (795)
T 4a2l_A          263 NYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNR  341 (795)
T ss_dssp             SBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGS
T ss_pred             CeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCccc
Confidence            45888877 45567677766 588899887765443221        123455888888888889988999999876553


Q ss_pred             ee-eeccC---C-ccceeeeeccCCC-eEEEecCCCcEEEEEcCCcceeeeccc--------cCCceeEEEeCCC-CeEE
Q 022303          184 SV-FPSRE---G-TFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIRM--------HCAPVTSLSLSED-QLII  248 (299)
Q Consensus       184 ~~-~~~~~---~-~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~~i~~~~~~~~-~~l~  248 (299)
                      .. +....   + ....+.++..+.+ .+..|+.++-|..||..+++.......        ....|.++...++ ..|.
T Consensus       342 ~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lW  421 (795)
T 4a2l_A          342 FKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVY  421 (795)
T ss_dssp             SEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEE
T ss_pred             ceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEE
Confidence            21 11110   0 1122445544433 477788888899999887654332211        2356889988777 5377


Q ss_pred             EEeCCCcEEEEeCCCCceEEEeec-----cCCCCcEEEEEccCCCCeEEee
Q 022303          249 SGSSLGSIAISGLSSDQRVATLRS-----TDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       249 ~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      .|+.++-|..||..+++.. .+..     ...  .|.++...++|.+.+..
T Consensus       422 igt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~--~v~~i~~d~~g~lwigt  469 (795)
T 4a2l_A          422 IGTHAGGLSILHRNSGQVE-NFNQRNSQLVNE--NVYAILPDGEGNLWLGT  469 (795)
T ss_dssp             EEETTTEEEEEETTTCCEE-EECTTTSCCSCS--CEEEEEECSSSCEEEEE
T ss_pred             EEeCcCceeEEeCCCCcEE-EeecCCCCcCCC--eeEEEEECCCCCEEEEe
Confidence            7888777999999877643 3322     122  79999999888866553

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.01  E-value=0.0035  Score=50.61  Aligned_cols=180  Identities=12%  Similarity=0.038  Sum_probs=103.0

Q ss_pred             cCeeEEEe-cCC-EEEEEe-CCC-cEEEEecCCceeEEEecCCC--ceeEEEEecCCCEEEEE-cCCeEEEEecCCce-e
Q 022303          113 VGVDQCRM-KRG-LILTGV-GDK-VMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIVGL-IGTRICIWRRNGLR-S  184 (299)
Q Consensus       113 ~~i~~~~~-~~~-~l~s~~-~dg-~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~-~  184 (299)
                      .....+.+ +++ ++++.. .++ .|..+|..+++.........  ....++..+++..+++. .++.|+++|..+.. .
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence            35677888 555 433333 233 46667777777544333222  11224444555444444 58899999987542 1


Q ss_pred             ee--e------ccCCccceeeeeccCCCeE-EEecCCCcEEEEEcCC-cce--eeeccccCCceeEEEeCCC-CeEEEEe
Q 022303          185 VF--P------SREGTFMKGLCMRYFDPEA-VVGCEDGTARVFDMYS-RKC--SQIIRMHCAPVTSLSLSED-QLIISGS  251 (299)
Q Consensus       185 ~~--~------~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~~~~-~~l~~~~  251 (299)
                      +.  .      ...........+++++..+ ++-...+.|..+|+.. ++.  ...+. .......++++++ +++++..
T Consensus       152 v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~  230 (306)
T 2p4o_A          152 IWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATH  230 (306)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECB
T ss_pred             EEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeC
Confidence            11  0      0111111122336777665 4555678899999874 322  11221 1234667889988 7777777


Q ss_pred             CCCcEEEEeCCCCceEE--EeeccCCCCcEEEEEcc---CCCCeEEeeec
Q 022303          252 SLGSIAISGLSSDQRVA--TLRSTDCTGHIICLMYP---QFLHMLFFLCF  296 (299)
Q Consensus       252 ~dg~i~iwd~~~~~~~~--~~~~~~~~~~i~~~~~s---~~g~~l~s~s~  296 (299)
                      ..+.|.++|.. ++...  .+.....  ..++++|.   |+++.|+.++.
T Consensus       231 ~~~~V~~~~~~-G~~~~~~~~~~~~~--~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          231 IYNSVVRIAPD-RSTTIIAQAEQGVI--GSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             TTCCEEEECTT-CCEEEEECGGGTCT--TEEEEEECCSTTTTTEEEEEEC
T ss_pred             CCCeEEEECCC-CCEEEEeecccccC--CceEEEEecccCCCCEEEEECC
Confidence            78899999975 66533  2332223  68999998   89877776553

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.98  E-value=0.0042  Score=52.06  Aligned_cols=175  Identities=10%  Similarity=0.006  Sum_probs=104.6

Q ss_pred             eEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-E-EcCCeEEEEecCCcee-eeeccCC
Q 022303          116 DQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGTRICIWRRNGLRS-VFPSREG  191 (299)
Q Consensus       116 ~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~d~~i~v~d~~~~~~-~~~~~~~  191 (299)
                      .|... +..+|+.+. ...|+..++.................++|++.+..|+ + ...+.|+.+++.+... .+.....
T Consensus        80 ~C~~~~~~~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~  158 (386)
T 3v65_B           80 SCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL  158 (386)
T ss_dssp             CEEECSSCCEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred             eECCccccceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence            34444 333444443 3578888888766655555556677799998777666 4 3567899999886642 2211111


Q ss_pred             ccceeeeeccCCCeE-EEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEE-EEeCC-CcEEEEeCCCCceE
Q 022303          192 TFMKGLCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLII-SGSSL-GSIAISGLSSDQRV  267 (299)
Q Consensus       192 ~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~-~~~~d-g~i~iwd~~~~~~~  267 (299)
                      .....+++.+.+..| ++-...+.|.+.++........+.........++++|. ..|. +-... +.|..+++.. ...
T Consensus       159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~  237 (386)
T 3v65_B          159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGR  237 (386)
T ss_dssp             SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSC
T ss_pred             CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC-CCc
Confidence            112245777666654 45555678888887643322223233356789999986 5444 44444 7888888864 333


Q ss_pred             EEee-ccCCCCcEEEEEccCCCCeEEee
Q 022303          268 ATLR-STDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       268 ~~~~-~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      ..+. ..-.  ..+.|+++|++..|..+
T Consensus       238 ~~~~~~~~~--~PnGlavd~~~~~lY~a  263 (386)
T 3v65_B          238 RIIADTHLF--WPNGLTIDYAGRRMYWV  263 (386)
T ss_dssp             EEEECSSCS--CEEEEEEEGGGTEEEEE
T ss_pred             EEEEECCCC--CeeeEEEeCCCCEEEEE
Confidence            3332 2222  67899999876666544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.97  E-value=0.0026  Score=51.76  Aligned_cols=177  Identities=7%  Similarity=-0.103  Sum_probs=105.2

Q ss_pred             CeeEEEec--CCEEEEEeCCCcEEEEecCCceeEEEec---CC--CceeEEEEec-CCCEEEEEc---------------
Q 022303          114 GVDQCRMK--RGLILTGVGDKVMRLWSLEGYKCVEEYS---LP--NAASLVDFDF-DESKIVGLI---------------  170 (299)
Q Consensus       114 ~i~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~--~~~~~~~~~~-~~~~l~~~~---------------  170 (299)
                      ....+.+.  ++.|+.+...+.|..+|..+++......   ..  .....+++.+ ++++.++..               
T Consensus        81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~  160 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT  160 (322)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred             CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence            46778884  4577777666668888877664322111   11  1234488999 888766443               


Q ss_pred             ---CCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEe-cCCCcEEEEEcCCcc--eeeeccccCCceeEEEeCCC
Q 022303          171 ---GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVG-CEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSED  244 (299)
Q Consensus       171 ---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~  244 (299)
                         ++.|..+|..+...............+++++++..++.+ ...+.|.+|++....  ....+....+ ...++++++
T Consensus       161 ~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~  239 (322)
T 2fp8_A          161 SDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD  239 (322)
T ss_dssp             TCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTT
T ss_pred             cCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCC
Confidence               367888998765422111111112246888888865544 566889999987421  1112211223 788999988


Q ss_pred             -CeEEEEeC----------CCcEEEEeCCCCceEEEeeccCC--CCcEEEEEccCCCCeEEe
Q 022303          245 -QLIISGSS----------LGSIAISGLSSDQRVATLRSTDC--TGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       245 -~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~i~~~~~s~~g~~l~s  293 (299)
                       +++++...          .+.|..+|. .++.+..+....+  ...+.++++ .+++++++
T Consensus       240 G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~  299 (322)
T 2fp8_A          240 GHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIG  299 (322)
T ss_dssp             SCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEE
T ss_pred             CCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEe
Confidence             76655544          467888987 4888877765432  115667766 35554444

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.96  E-value=0.0053  Score=50.68  Aligned_cols=179  Identities=10%  Similarity=-0.009  Sum_probs=106.7

Q ss_pred             cCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-E-EcCCeEEEEecCCcee-eeec
Q 022303          113 VGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGTRICIWRRNGLRS-VFPS  188 (299)
Q Consensus       113 ~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~d~~i~v~d~~~~~~-~~~~  188 (299)
                      +..+|... ++.+|+.+. ...|+..++........+.....+..++|++.+..|+ + ...+.|+.+++.+... .+..
T Consensus        34 d~~~C~~~~~~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  112 (349)
T 3v64_C           34 DRRSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  112 (349)
T ss_dssp             TSSCEEESSSCCEEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             CCCcccccccCceeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence            33445554 333444443 3457778887666555555556667799998777766 4 3467899999886542 2111


Q ss_pred             cCCccceeeeeccCCCeE-EEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-C-eEEEEeCC-CcEEEEeCCCC
Q 022303          189 REGTFMKGLCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGSSL-GSIAISGLSSD  264 (299)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~d-g~i~iwd~~~~  264 (299)
                      ........+++.+.+..| ++-...+.|.+.++........+.........++++|. . ++++-... +.|..+++. |
T Consensus       113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d-G  191 (349)
T 3v64_C          113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-G  191 (349)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-S
T ss_pred             CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC-C
Confidence            111122245777666664 45556778999998743322223233456789999986 4 44444444 788888885 4


Q ss_pred             ceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          265 QRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       265 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      .....+-.... ...+.++++|++..|..+
T Consensus       192 ~~~~~~~~~~~-~~PnGla~d~~~~~lY~a  220 (349)
T 3v64_C          192 SGRRIIADTHL-FWPNGLTIDYAGRRMYWV  220 (349)
T ss_dssp             CSCEESCCSSC-SCEEEEEEETTTTEEEEE
T ss_pred             CCcEEEEECCC-CCcceEEEeCCCCEEEEE
Confidence            33333322111 167899999877666554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.96  E-value=0.0019  Score=50.04  Aligned_cols=149  Identities=11%  Similarity=0.016  Sum_probs=91.8

Q ss_pred             ceeEEEecCCCceeE--EEEecCCCEEEEEcC---CeEEEEecCCceeeeeccCCccceeeeeccCCCeEE-EecCCCcE
Q 022303          142 YKCVEEYSLPNAASL--VDFDFDESKIVGLIG---TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTA  215 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i  215 (299)
                      .+.+.++.+......  +.|+. +.+..++..   ..|+.+|+.+++......-........+...+..++ ..-.++.+
T Consensus         9 ~~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v   87 (243)
T 3mbr_X            9 YRVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG   87 (243)
T ss_dssp             EEEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             eEEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE
Confidence            356667765544443  88876 333334443   499999999886443322222222234455566644 45568899


Q ss_pred             EEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCC---CcEEEEEccCCCCeEE
Q 022303          216 RVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCT---GHIICLMYPQFLHMLF  292 (299)
Q Consensus       216 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~i~~~~~s~~g~~l~  292 (299)
                      .+||..+.+.+.++.... .-..++.. ++.|+.+..++.|.++|..+.+.+.++......   ..++.+.+. +|+ |.
T Consensus        88 ~v~D~~tl~~~~ti~~~~-~Gwglt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-ly  163 (243)
T 3mbr_X           88 FVYDLATLTPRARFRYPG-EGWALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-LL  163 (243)
T ss_dssp             EEEETTTTEEEEEEECSS-CCCEEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EE
T ss_pred             EEEECCcCcEEEEEeCCC-CceEEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-EE
Confidence            999999999999886433 33555543 244555556889999999999988888654321   145566654 554 44


Q ss_pred             eee
Q 022303          293 FLC  295 (299)
Q Consensus       293 s~s  295 (299)
                      +..
T Consensus       164 anv  166 (243)
T 3mbr_X          164 ANV  166 (243)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.94  E-value=0.0053  Score=49.89  Aligned_cols=161  Identities=14%  Similarity=0.129  Sum_probs=97.7

Q ss_pred             CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-E-EcCCeEEEEecCC----ce-eeeeccCCccceeeeeccCCC
Q 022303          132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGTRICIWRRNG----LR-SVFPSREGTFMKGLCMRYFDP  204 (299)
Q Consensus       132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~d~~i~v~d~~~----~~-~~~~~~~~~~~~~~~~~~~~~  204 (299)
                      ..|+..|+.+.+....+..-..+..++|++.+..|+ + ..++.|+.+++.+    .. ..+..........+++.+.+.
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~   89 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence            568888988877666666556677799998777666 4 3467999999876    22 111111111122456766566


Q ss_pred             eE-EEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC-C-CcEEEEeCCCCceEEEeeccCCCCcEE
Q 022303          205 EA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-L-GSIAISGLSSDQRVATLRSTDCTGHII  280 (299)
Q Consensus       205 ~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~i~  280 (299)
                      .+ ++-...+.|.++|+........+.........++++|. ..|..+.. . +.|...++. |.....+..... ....
T Consensus        90 ~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~-~~P~  167 (316)
T 1ijq_A           90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENI-QWPN  167 (316)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSC-SCEE
T ss_pred             eEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCC-CCce
Confidence            55 44466788999998743332222223456789999985 54444443 3 688888875 444444422211 1688


Q ss_pred             EEEccCCCCeEEee
Q 022303          281 CLMYPQFLHMLFFL  294 (299)
Q Consensus       281 ~~~~s~~g~~l~s~  294 (299)
                      .++++|++..|..+
T Consensus       168 gla~d~~~~~lY~~  181 (316)
T 1ijq_A          168 GITLDLLSGRLYWV  181 (316)
T ss_dssp             EEEEETTTTEEEEE
T ss_pred             EEEEeccCCEEEEE
Confidence            99999887766554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.91  E-value=0.0029  Score=51.43  Aligned_cols=175  Identities=8%  Similarity=0.034  Sum_probs=104.1

Q ss_pred             eeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecC---------------------CCceeEEEEec-CCCEEEEEc
Q 022303          115 VDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSL---------------------PNAASLVDFDF-DESKIVGLI  170 (299)
Q Consensus       115 i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------------~~~~~~~~~~~-~~~~l~~~~  170 (299)
                      -.++++ +++ +++++..++.|..|+..+++... +..                     ...+..+++.+ +++++++..
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~   99 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC   99 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence            345667 455 58888899999999987654332 210                     01345588997 666666767


Q ss_pred             CCeEEEEecCCcee-eeec-cCC---ccceeeeecc-CCCeEEEecC-----------------CCcEEEEEcCCcceee
Q 022303          171 GTRICIWRRNGLRS-VFPS-REG---TFMKGLCMRY-FDPEAVVGCE-----------------DGTARVFDMYSRKCSQ  227 (299)
Q Consensus       171 d~~i~v~d~~~~~~-~~~~-~~~---~~~~~~~~~~-~~~~l~s~~~-----------------d~~i~iwd~~~~~~~~  227 (299)
                      .+.+..+|..++.. .+.. ..+   ....-+++.+ ++...++-..                 ++.|..+|..+++...
T Consensus       100 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  179 (322)
T 2fp8_A          100 YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL  179 (322)
T ss_dssp             TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred             CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence            77788898876531 2211 111   1122356667 6654444321                 3678888887665432


Q ss_pred             eccccCCceeEEEeCCC-CeEE-EEeCCCcEEEEeCCCCc--eEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          228 IIRMHCAPVTSLSLSED-QLII-SGSSLGSIAISGLSSDQ--RVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       228 ~~~~~~~~i~~~~~~~~-~~l~-~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      .. ........++++|+ +.|. +-+.++.|..|++....  ....+.. ..  ....++++++|++.++.
T Consensus       180 ~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~--gP~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          180 LL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP--NPGNIKRNADGHFWVSS  246 (322)
T ss_dssp             EE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CS--SEEEEEECTTSCEEEEE
T ss_pred             ec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CC--CCCCeEECCCCCEEEEe
Confidence            22 22234678999998 6554 44667899999987421  1222221 11  26788999999866654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.85  E-value=0.0023  Score=56.81  Aligned_cols=145  Identities=10%  Similarity=-0.041  Sum_probs=93.9

Q ss_pred             EEEEeCCCcEEEEecCCceeEEEecCCC-----ceeE-EEEecCCCEEEEE------cCCeEEEEecCCceeeeeccCCc
Q 022303          125 ILTGVGDKVMRLWSLEGYKCVEEYSLPN-----AASL-VDFDFDESKIVGL------IGTRICIWRRNGLRSVFPSREGT  192 (299)
Q Consensus       125 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~l~~~------~d~~i~v~d~~~~~~~~~~~~~~  192 (299)
                      ++.++.|+.|..+|..+|+.+.......     .... -.+ .++..++++      .++.|+.+|.++++.........
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~  202 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG  202 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC
Confidence            8999999999999999999988776443     2221 112 245445544      37899999999887544322111


Q ss_pred             cc---------------------------------------eeeeeccCCCeEEEecCC----------------CcEEE
Q 022303          193 FM---------------------------------------KGLCMRYFDPEAVVGCED----------------GTARV  217 (299)
Q Consensus       193 ~~---------------------------------------~~~~~~~~~~~l~s~~~d----------------~~i~i  217 (299)
                      ..                                       ...++.+....++.+..+                +.|..
T Consensus       203 ~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A  282 (599)
T 1w6s_A          203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG  282 (599)
T ss_dssp             CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred             CccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence            00                                       012233445556666554                37999


Q ss_pred             EEcCCcceeeeccccC----------CceeEEEeC-C-C---CeEEEEeCCCcEEEEeCCCCceEEEee
Q 022303          218 FDMYSRKCSQIIRMHC----------APVTSLSLS-E-D---QLIISGSSLGSIAISGLSSDQRVATLR  271 (299)
Q Consensus       218 wd~~~~~~~~~~~~~~----------~~i~~~~~~-~-~---~~l~~~~~dg~i~iwd~~~~~~~~~~~  271 (299)
                      +|.++++.+..++...          .++. +... . +   ..++.++.+|.++++|..+|+.+....
T Consensus       283 ld~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          283 RDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             EETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            9999999987776321          1221 2221 1 2   357778899999999999999887765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.82  E-value=0.011  Score=49.78  Aligned_cols=168  Identities=12%  Similarity=0.088  Sum_probs=102.0

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EE-cCCeEEEEecCCce-----eeeeccCCcccee
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICIWRRNGLR-----SVFPSREGTFMKG  196 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~-----~~~~~~~~~~~~~  196 (299)
                      +|+.+. ...|+..++........+.....+..++|++.+..|+ +. ..+.|+.+++.+..     ..+..........
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g  163 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  163 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred             eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence            444444 3678888888766655566666777799998777776 43 46789999887521     1111111122234


Q ss_pred             eeeccCCCeE-EEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEe-C-CCcEEEEeCCCCceEEEeec
Q 022303          197 LCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-S-LGSIAISGLSSDQRVATLRS  272 (299)
Q Consensus       197 ~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~  272 (299)
                      +++.+.+..| ++-...+.|.+.++........+.........|+++|. ..|.... . .+.|...++........+..
T Consensus       164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~  243 (400)
T 3p5b_L          164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  243 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS
T ss_pred             EEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC
Confidence            5777655554 44556778999888754433333333455789999986 5554444 2 47899999864332222222


Q ss_pred             cCCCCcEEEEEccCCCCeEEee
Q 022303          273 TDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       273 ~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      .-.  ....|+++|++..|..+
T Consensus       244 ~l~--~P~glavd~~~~~lY~a  263 (400)
T 3p5b_L          244 NIQ--WPNGITLDLLSGRLYWV  263 (400)
T ss_dssp             SCS--CEEEEEEETTTTEEEEE
T ss_pred             CCC--ceEEEEEEeCCCEEEEE
Confidence            223  68999999877766654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.80  E-value=0.00088  Score=60.49  Aligned_cols=151  Identities=13%  Similarity=0.093  Sum_probs=99.2

Q ss_pred             cCCEEEEEeCCCcEEEEecCCceeEEEecCCCce----------e--EEEEecCCCEEEEEcCCeEEEEecCCceeeeec
Q 022303          121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA----------S--LVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS  188 (299)
Q Consensus       121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~--~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~  188 (299)
                      .++.++.++.++.|..+|..+|+.+.++......          +  .+.+. ++..++++.|+.++.+|..+++.....
T Consensus        65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW-GDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-BTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE-CCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            4668888888999999999999999888654321          0  12221 333344888999999999988755433


Q ss_pred             cCCcc--ceeeeecc--CCCeEEEecC------CCcEEEEEcCCcceeeeccccC-------------------------
Q 022303          189 REGTF--MKGLCMRY--FDPEAVVGCE------DGTARVFDMYSRKCSQIIRMHC-------------------------  233 (299)
Q Consensus       189 ~~~~~--~~~~~~~~--~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~-------------------------  233 (299)
                      .....  .......|  .+..++.+..      ++.|..+|..+|+.+..+....                         
T Consensus       144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w  223 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW  223 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred             ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence            22110  00000011  2344555543      5899999999999987764210                         


Q ss_pred             ------CceeEEEeCCC-CeEEEEeCCC-------------------cEEEEeCCCCceEEEeec
Q 022303          234 ------APVTSLSLSED-QLIISGSSLG-------------------SIAISGLSSDQRVATLRS  272 (299)
Q Consensus       234 ------~~i~~~~~~~~-~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~  272 (299)
                            .....++++|+ .++..++.++                   .|..+|..+|+.+..++.
T Consensus       224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~  288 (668)
T 1kv9_A          224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV  288 (668)
T ss_dssp             HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred             eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeec
Confidence                  01124677777 7888887766                   399999999999888765

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.78  E-value=0.0085  Score=55.11  Aligned_cols=180  Identities=12%  Similarity=0.005  Sum_probs=112.5

Q ss_pred             ccCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEec----------CCCceeEEEEecCCCEEEEEcCCeEEEEecC
Q 022303          112 SVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYS----------LPNAASLVDFDFDESKIVGLIGTRICIWRRN  180 (299)
Q Consensus       112 ~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~  180 (299)
                      ...|.++.. .++.|-.|+.++-|..++..+........          ....+.++...+++.+.+|+.++.+..||..
T Consensus       312 ~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~  391 (781)
T 3v9f_A          312 NASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENG  391 (781)
T ss_dssp             SSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETT
T ss_pred             CCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECC
Confidence            346777777 45578888888888889887654332211          1123445777778887778888889999987


Q ss_pred             Cceeeeecc--CCccceeeeeccC-CCeEEEecCCCcEEEEEcCCcceeeecc--ccCCceeEEEeCCCCeEEEEeCCCc
Q 022303          181 GLRSVFPSR--EGTFMKGLCMRYF-DPEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSEDQLIISGSSLGS  255 (299)
Q Consensus       181 ~~~~~~~~~--~~~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~~~~dg~  255 (299)
                      +........  ......+.++..+ ...|..|..++-+..+|..+++......  .....|.++...++..|..|+. +-
T Consensus       392 ~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~G  470 (781)
T 3v9f_A          392 KRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AG  470 (781)
T ss_dssp             EEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TE
T ss_pred             CCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-Cc
Confidence            654221111  1111224444444 3347778777779999988765433221  2345788998887755666666 55


Q ss_pred             EEEEeCCCCceEEEeecc-----CCCCcEEEEEccCCCCeEEee
Q 022303          256 IAISGLSSDQRVATLRST-----DCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       256 i~iwd~~~~~~~~~~~~~-----~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      |..+|..+++........     ..  .|.++...++|.+.++.
T Consensus       471 l~~~~~~~~~~~~~~~~~~~~~~~~--~i~~i~~d~~g~lWigt  512 (781)
T 3v9f_A          471 VFVIDLASKKVIHHYDTSNSQLLEN--FVRSIAQDSEGRFWIGT  512 (781)
T ss_dssp             EEEEESSSSSCCEEECTTTSSCSCS--CEEEEEECTTCCEEEEE
T ss_pred             eEEEeCCCCeEEecccCcccccccc--eeEEEEEcCCCCEEEEE
Confidence            999998876643332222     22  79999999998876653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.78  E-value=0.0081  Score=55.24  Aligned_cols=180  Identities=12%  Similarity=0.031  Sum_probs=109.8

Q ss_pred             cCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEe---c-CCCceeEEEEecCCCEEEEEcCCeEEEEecCCceeeee
Q 022303          113 VGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEY---S-LPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFP  187 (299)
Q Consensus       113 ~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~-~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~  187 (299)
                      ..|.++.. +++.|..|+.++-|..+|..+++.....   . ....+.++...+++.+.+++.++.+..+|..+.+....
T Consensus       363 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~  442 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQII  442 (781)
T ss_dssp             SCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEEC
T ss_pred             cceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEe
Confidence            45777777 4567788887777888998765433211   1 12334457777788877788888899999876643221


Q ss_pred             cc-CCccceeeeeccCC-CeEEEecCCCcEEEEEcCCcceeeecccc-----CCceeEEEeCCCCeEEEEeCCCcEEEEe
Q 022303          188 SR-EGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYSRKCSQIIRMH-----CAPVTSLSLSEDQLIISGSSLGSIAISG  260 (299)
Q Consensus       188 ~~-~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~i~~~~~~~~~~l~~~~~dg~i~iwd  260 (299)
                      .. ......+.++..+. ..+..|.. +-+..+|..+++........     ...|.++...++..|..|+.++-|..||
T Consensus       443 ~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~  521 (781)
T 3v9f_A          443 ELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYT  521 (781)
T ss_dssp             CSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEEC
T ss_pred             ccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEe
Confidence            11 11112233444443 34666666 56889998876543322111     3578899888774455666644588899


Q ss_pred             CCCCceEEEeeccCC--CCcEEEEEccCCCCeEEee
Q 022303          261 LSSDQRVATLRSTDC--TGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       261 ~~~~~~~~~~~~~~~--~~~i~~~~~s~~g~~l~s~  294 (299)
                      ..+++ +..+.....  ...|.++..+++|.+.++.
T Consensus       522 ~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T  556 (781)
T 3v9f_A          522 PDMQL-VRKFNQYEGFCSNTINQIYRSSKGQMWLAT  556 (781)
T ss_dssp             TTCCE-EEEECTTTTCSCSCEEEEEECTTSCEEEEE
T ss_pred             CCCCe-EEEccCCCCCCCCeeEEEEECCCCCEEEEE
Confidence            87654 333432111  1278999999998876653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.65  E-value=0.03  Score=51.40  Aligned_cols=161  Identities=13%  Similarity=0.124  Sum_probs=98.5

Q ss_pred             CCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-E-EcCCeEEEEecCCc------eeeeeccCCccceeeeecc
Q 022303          130 GDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGTRICIWRRNGL------RSVFPSREGTFMKGLCMRY  201 (299)
Q Consensus       130 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~d~~i~v~d~~~~------~~~~~~~~~~~~~~~~~~~  201 (299)
                      ....|+..++........+........+++++.+..|+ + ...+.|+.+++.+.      ..++... ......+++.+
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~-l~~P~GLAvD~  480 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDW  480 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS-CSCCCEEEEET
T ss_pred             cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC-CCCcceeeeee
Confidence            34567777877666555555666677799998766665 4 34578888888753      1222211 12222467777


Q ss_pred             CCCeEE-EecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEe-C-CCcEEEEeCCCCceEEEeec-cCCC
Q 022303          202 FDPEAV-VGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-S-LGSIAISGLSSDQRVATLRS-TDCT  276 (299)
Q Consensus       202 ~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~-~~~~  276 (299)
                      .+..|+ +-...+.|.+.++........+.........|+++|. ..|..+. . .+.|...++. |.....+.. .-. 
T Consensus       481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~lv~~~l~-  558 (791)
T 3m0c_C          481 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQ-  558 (791)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCS-
T ss_pred             cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEEEeCCCC-
Confidence            776644 5556788999998744332233233455889999987 5555544 3 3678889986 443333332 223 


Q ss_pred             CcEEEEEccCCCCeEEee
Q 022303          277 GHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       277 ~~i~~~~~s~~g~~l~s~  294 (299)
                       ....|++++.+..|+.+
T Consensus       559 -~P~GLavD~~~~~LYwa  575 (791)
T 3m0c_C          559 -WPNGITLDLLSGRLYWV  575 (791)
T ss_dssp             -CEEEEEEETTTTEEEEE
T ss_pred             -CceEEEEecCCCeEEEE
Confidence             78899999876666554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.60  E-value=0.0038  Score=53.11  Aligned_cols=138  Identities=5%  Similarity=0.034  Sum_probs=82.2

Q ss_pred             eeEEEEec-CCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecC-CC----cEEEEEcCCccee
Q 022303          154 ASLVDFDF-DESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-DG----TARVFDMYSRKCS  226 (299)
Q Consensus       154 ~~~~~~~~-~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~----~i~iwd~~~~~~~  226 (299)
                      +..++++| ++..|+ +...+.|+.+|+.+...............+++.+++..|+.+.. ++    .+..++. .+...
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~  217 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFK  217 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSC
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCcee
Confidence            34588997 344555 55558899999987653222222333335688888886555543 22    2333443 33322


Q ss_pred             --eeccccCCceeEEEeCC-C-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          227 --QIIRMHCAPVTSLSLSE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       227 --~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                        ..+. .......++++| + .++++-..++.|..++...+............ ....++|+|+|++|+.+
T Consensus       218 ~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~-~P~gia~~pdG~~lyv~  287 (430)
T 3tc9_A          218 VITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSG-WEFHIQFHPSGNYAYIV  287 (430)
T ss_dssp             SEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSS-CCEEEEECTTSSEEEEE
T ss_pred             eeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCC-cceeEEEcCCCCEEEEE
Confidence              2222 233467788999 5 55666667889999999766542222222211 57899999999966554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.59  E-value=0.019  Score=46.19  Aligned_cols=175  Identities=9%  Similarity=0.007  Sum_probs=96.7

Q ss_pred             cCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEc--CC-eEEEEecCCceee--
Q 022303          113 VGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLI--GT-RICIWRRNGLRSV--  185 (299)
Q Consensus       113 ~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--d~-~i~v~d~~~~~~~--  185 (299)
                      .....+++ +++ ++++-..++.|..||... +....+........++++++++++++..  ++ .|..+|..++...  
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~  110 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  110 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence            34567788 555 555555788999999775 4444444444555699999999766443  22 5777776665421  


Q ss_pred             eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcce-eee---------ccccCCceeEEEeCCC-C-eEEEEeCC
Q 022303          186 FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-SQI---------IRMHCAPVTSLSLSED-Q-LIISGSSL  253 (299)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~---------~~~~~~~i~~~~~~~~-~-~l~~~~~d  253 (299)
                      ............+....+..+++-..++.|..+|...++. +..         ....-...+.+  +++ + ++++-...
T Consensus       111 ~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~  188 (306)
T 2p4o_A          111 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEK  188 (306)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTT
T ss_pred             EeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCC
Confidence            1111122222223323222244444688899999875421 110         00111234555  566 4 45555668


Q ss_pred             CcEEEEeCCC-Cce--EEEeeccCCCCcEEEEEccCCCCeEEe
Q 022303          254 GSIAISGLSS-DQR--VATLRSTDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       254 g~i~iwd~~~-~~~--~~~~~~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      +.|..+|+.. ++.  ...+... .  ....++++++|+++++
T Consensus       189 ~~I~~~~~~~~g~~~~~~~~~~~-~--~P~gi~vd~dG~l~va  228 (306)
T 2p4o_A          189 MLLLRIPVDSTDKPGEPEIFVEQ-T--NIDDFAFDVEGNLYGA  228 (306)
T ss_dssp             TEEEEEEBCTTSCBCCCEEEEES-C--CCSSEEEBTTCCEEEE
T ss_pred             CEEEEEEeCCCCCCCccEEEecc-C--CCCCeEECCCCCEEEE
Confidence            8999999864 321  1122111 1  4566788888876554

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=97.56  E-value=5.2e-05  Score=43.74  Aligned_cols=47  Identities=32%  Similarity=0.566  Sum_probs=38.9

Q ss_pred             CcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHH
Q 022303           20 PRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQL   66 (299)
Q Consensus        20 ~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~   66 (299)
                      ....+..+|.|+..+|+++++..+.+++..+|+.|+.++.+..+|+.
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~   51 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT   51 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC--
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHh
Confidence            34567889999999999999999999999999999999987778864

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.53  E-value=0.009  Score=54.73  Aligned_cols=148  Identities=9%  Similarity=0.096  Sum_probs=86.5

Q ss_pred             CeeEEEec--CC-EEE-EEeCCC----cEEEEecCCc-eeEE-EecCCCceeEEEEecCCCEEE-EEcC-----CeEEEE
Q 022303          114 GVDQCRMK--RG-LIL-TGVGDK----VMRLWSLEGY-KCVE-EYSLPNAASLVDFDFDESKIV-GLIG-----TRICIW  177 (299)
Q Consensus       114 ~i~~~~~~--~~-~l~-s~~~dg----~i~iwd~~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~-~~~d-----~~i~v~  177 (299)
                      .+....|+  ++ +|+ +.+.+|    +|+++|+.++ +.+. .+.  .....+.|+||++.|+ ...+     ..|+.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            45566665  55 454 333333    5999999998 6321 111  1112388999999888 5554     368888


Q ss_pred             ecCCce----eeeeccCCccceeeeeccCCCeEEEec---CCCcEEEEEcCCcc-ee--eec-cccCCceeEEEeCCC-C
Q 022303          178 RRNGLR----SVFPSREGTFMKGLCMRYFDPEAVVGC---EDGTARVFDMYSRK-CS--QII-RMHCAPVTSLSLSED-Q  245 (299)
Q Consensus       178 d~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~-~~--~~~-~~~~~~i~~~~~~~~-~  245 (299)
                      ++.++.    .++............+++++.+|+...   ....|.++|+.++. ..  ..+ ........++.|+.+ .
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~  332 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSH  332 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTE
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCE
Confidence            987753    233322222223457999999866443   34468888988752 12  233 233455666766656 4


Q ss_pred             eEEEEeCC----CcEEEEeCCC
Q 022303          246 LIISGSSL----GSIAISGLSS  263 (299)
Q Consensus       246 ~l~~~~~d----g~i~iwd~~~  263 (299)
                      +++....+    ..|..+|+.+
T Consensus       333 l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          333 LVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             EEEEECTTTCTTCEEEEEETTS
T ss_pred             EEEEeCCCCCCCcEEEEEcCCC
Confidence            45554443    3577777764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.52  E-value=0.0015  Score=57.95  Aligned_cols=129  Identities=11%  Similarity=0.031  Sum_probs=82.0

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCce----------------------------------------------eEE
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAA----------------------------------------------SLV  157 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------------------------------------------~~~  157 (299)
                      .++.++.+|.++++|..+|+.+..+.....+                                              ..+
T Consensus       338 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~  417 (582)
T 1flg_A          338 ATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPM  417 (582)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCC
T ss_pred             EEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCc
Confidence            6788999999999999999988766543200                                              013


Q ss_pred             EEecCCCEEE-EE---------------------------------cCCeEEEEecCCceeeeeccCCccceeeeeccCC
Q 022303          158 DFDFDESKIV-GL---------------------------------IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFD  203 (299)
Q Consensus       158 ~~~~~~~~l~-~~---------------------------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  203 (299)
                      +++|+..+++ ..                                 .+|.|..||+.+++.............-.+...+
T Consensus       418 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tag  497 (582)
T 1flg_A          418 AYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAG  497 (582)
T ss_dssp             EECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETT
T ss_pred             eECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCC
Confidence            5555554444 22                                 2578999999988755443322111111223346


Q ss_pred             CeEEEecCCCcEEEEEcCCcceeeeccccCCce-eEEEeCCC--CeEEEEeC
Q 022303          204 PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPV-TSLSLSED--QLIISGSS  252 (299)
Q Consensus       204 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i-~~~~~~~~--~~l~~~~~  252 (299)
                      ..++.++.|+.++.||.++++.+.+++...... .-+.+..+  +++++.+.
T Consensus       498 glvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G  549 (582)
T 1flg_A          498 NLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence            667889999999999999999998887433221 12444444  56665544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.48  E-value=0.029  Score=45.57  Aligned_cols=160  Identities=14%  Similarity=0.062  Sum_probs=94.5

Q ss_pred             CCcEEEEecCCce--eEEEecCCCceeEEEEecCCCEEE-E-EcCCeEEEEecCCce---eeeeccCCccceeeeeccCC
Q 022303          131 DKVMRLWSLEGYK--CVEEYSLPNAASLVDFDFDESKIV-G-LIGTRICIWRRNGLR---SVFPSREGTFMKGLCMRYFD  203 (299)
Q Consensus       131 dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~-~-~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~  203 (299)
                      ...|+..++....  ....+......+.++|++.+..|+ + ...+.|+.+++.+..   ........ ....+++.+.+
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~-~p~glavd~~~   90 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL-SPDGLACDWLG   90 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCS-CCCEEEEETTT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCC-CccEEEEEcCC
Confidence            4678888887653  222222223456689998766666 4 346789999987653   11211111 12245677655


Q ss_pred             CeE-EEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEe--CCCcEEEEeCCCCceEEEee-ccCCCCc
Q 022303          204 PEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS--SLGSIAISGLSSDQRVATLR-STDCTGH  278 (299)
Q Consensus       204 ~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~--~dg~i~iwd~~~~~~~~~~~-~~~~~~~  278 (299)
                      ..| ++-...+.|.++++........+.........++++|. ..|..+.  ..+.|...++. |.....+- ..-.  .
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~--~  167 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIY--W  167 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCS--C
T ss_pred             CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCC--C
Confidence            554 45556778999998743322222233456789999986 5555554  35788888875 43333332 2222  6


Q ss_pred             EEEEEccCCCCeEEee
Q 022303          279 IICLMYPQFLHMLFFL  294 (299)
Q Consensus       279 i~~~~~s~~g~~l~s~  294 (299)
                      .+.++++|++..|..+
T Consensus       168 Pnglavd~~~~~lY~a  183 (318)
T 3sov_A          168 PNGLTLDYEEQKLYWA  183 (318)
T ss_dssp             EEEEEEETTTTEEEEE
T ss_pred             ccEEEEeccCCEEEEE
Confidence            7899999976666544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.41  E-value=0.043  Score=45.88  Aligned_cols=169  Identities=12%  Similarity=0.048  Sum_probs=97.0

Q ss_pred             CeeEEEec--CC-EEEEEeCCCcEEEEecCCceeEEEecCC-CceeEEEEecCCCEEE-E-EcCCeEEEEecCCcee-ee
Q 022303          114 GVDQCRMK--RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-G-LIGTRICIWRRNGLRS-VF  186 (299)
Q Consensus       114 ~i~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~-~~d~~i~v~d~~~~~~-~~  186 (299)
                      ....++|.  ++ ++++-...+.|..++.........+... .....+++++.+..|+ + ...+.|.+.++.+... .+
T Consensus       117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l  196 (386)
T 3v65_B          117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL  196 (386)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEE
T ss_pred             ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEe
Confidence            45567773  34 4445556788888888765543333322 2334488888666655 3 4467888888876532 22


Q ss_pred             eccCCccceeeeeccCCCeEEEec-CC-CcEEEEEcCCcceeeeccccCCceeEEEeCCC-C-eEEEEeCCCcEEEEeCC
Q 022303          187 PSREGTFMKGLCMRYFDPEAVVGC-ED-GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGSSLGSIAISGLS  262 (299)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~s~~-~d-~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~iwd~~  262 (299)
                      ..........+++.+.+..++... .. +.|..+++............-...+.|+++|+ . ++++-+..+.|..+|+.
T Consensus       197 ~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d  276 (386)
T 3v65_B          197 LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  276 (386)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred             ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            211112233467777776654443 34 67888887633222222223345789999976 4 45555567789999986


Q ss_pred             CCceEEEeeccCCCCcEEEEEc
Q 022303          263 SDQRVATLRSTDCTGHIICLMY  284 (299)
Q Consensus       263 ~~~~~~~~~~~~~~~~i~~~~~  284 (299)
                      .......+.....  ...++++
T Consensus       277 G~~~~~~~~~~~~--~P~giav  296 (386)
T 3v65_B          277 GSHRKAVISQGLP--HPFAITV  296 (386)
T ss_dssp             SCSCEEEECSSCS--SEEEEEE
T ss_pred             CCeeEEEEECCCC--CceEEEE
Confidence            4332222222222  5677777

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.36  E-value=0.0032  Score=57.70  Aligned_cols=136  Identities=9%  Similarity=-0.010  Sum_probs=79.9

Q ss_pred             EEEEe-cCCCEEE-EEc-CC----eEEEEecCCc-eeeeeccCCccceeeeeccCCCeEEEecCC-----CcEEEEEcCC
Q 022303          156 LVDFD-FDESKIV-GLI-GT----RICIWRRNGL-RSVFPSREGTFMKGLCMRYFDPEAVVGCED-----GTARVFDMYS  222 (299)
Q Consensus       156 ~~~~~-~~~~~l~-~~~-d~----~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~  222 (299)
                      ...|+ ||+++|+ +.. +|    .|+++|+.++ +........ .....+|+++++.|+....+     ..|..+++.+
T Consensus       178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~-~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt  256 (751)
T 2xe4_A          178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG-TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGK  256 (751)
T ss_dssp             EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE-ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTS
T ss_pred             eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC-ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCC
Confidence            48999 9999988 433 33    5999999887 522111111 12245899999886655544     3588888877


Q ss_pred             cce--eeecc-ccCCceeEEEeCCC-CeEEEEeC---CCcEEEEeCCCCc-eE--EEeeccCCCCcEEEEEccCCCCeEE
Q 022303          223 RKC--SQIIR-MHCAPVTSLSLSED-QLIISGSS---LGSIAISGLSSDQ-RV--ATLRSTDCTGHIICLMYPQFLHMLF  292 (299)
Q Consensus       223 ~~~--~~~~~-~~~~~i~~~~~~~~-~~l~~~~~---dg~i~iwd~~~~~-~~--~~~~~~~~~~~i~~~~~s~~g~~l~  292 (299)
                      +..  ...+. ........+.|+|| ++|+..+.   ...|.++|+.+++ ..  ..+...... ...++.|+.++.+++
T Consensus       257 ~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~-~~~s~~~~~g~~l~~  335 (751)
T 2xe4_A          257 LQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG-VRYDVQMHGTSHLVI  335 (751)
T ss_dssp             CGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT-CCEEEEEETTTEEEE
T ss_pred             CchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC-ceEEEeeeeCCEEEE
Confidence            542  22222 22344678899999 77665542   3468889987752 22  333322221 556665544444333


Q ss_pred             e
Q 022303          293 F  293 (299)
Q Consensus       293 s  293 (299)
                      .
T Consensus       336 ~  336 (751)
T 2xe4_A          336 L  336 (751)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.35  E-value=0.0063  Score=54.81  Aligned_cols=177  Identities=8%  Similarity=-0.063  Sum_probs=95.5

Q ss_pred             EEe-cCC-EEEEEe-CCCcEEEEecCCceeEEEecCCCc--eeEEEEecCCCEEE-EE-cC-----CeEEEEecCCceee
Q 022303          118 CRM-KRG-LILTGV-GDKVMRLWSLEGYKCVEEYSLPNA--ASLVDFDFDESKIV-GL-IG-----TRICIWRRNGLRSV  185 (299)
Q Consensus       118 ~~~-~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~-~~-~d-----~~i~v~d~~~~~~~  185 (299)
                      +.+ .++ +++.|+ .+..+.+||..+.+....-..+..  ...+++.+++++++ |+ .+     ..+.+||..+..-.
T Consensus       248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence            344 555 667776 456899999988765543222222  22355667888877 55 34     47999999876522


Q ss_pred             ee-c-----cCCccceeeeeccCCCeEEEecCCC---------cEEEEEcCCcceeeeccccC---------CceeEEEe
Q 022303          186 FP-S-----REGTFMKGLCMRYFDPEAVVGCEDG---------TARVFDMYSRKCSQIIRMHC---------APVTSLSL  241 (299)
Q Consensus       186 ~~-~-----~~~~~~~~~~~~~~~~~l~s~~~d~---------~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~  241 (299)
                      .. .     ...... ...+..++..++.|+.++         .+..||..+..-........         ..-.++.+
T Consensus       328 ~~~~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~  406 (656)
T 1k3i_A          328 SLPNAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMY  406 (656)
T ss_dssp             EETTSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEE
T ss_pred             eCCCccccccccccc-cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEec
Confidence            11 0     000000 012223333345554443         46788887654332221111         11233443


Q ss_pred             CC-C-CeEEEEeCCC-----------cEEEEeCCCCceEEEe--eccCCCCcEEEEEccCCCCeEEeeec
Q 022303          242 SE-D-QLIISGSSLG-----------SIAISGLSSDQRVATL--RSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       242 ~~-~-~~l~~~~~dg-----------~i~iwd~~~~~~~~~~--~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      .. + ++++.|+.++           .|.+||..+.+-....  ..+... .-.+++..|+|++++.|+.
T Consensus       407 ~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R-~~~~~~~l~~g~i~v~GG~  475 (656)
T 1k3i_A          407 DAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFAR-TFHTSVVLPDGSTFITGGQ  475 (656)
T ss_dssp             ETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCC-BSCEEEECTTSCEEEECCB
T ss_pred             cCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCc-ccCCeEECCCCCEEEECCc
Confidence            32 4 7788887543           6788888776644332  112221 2244566789999999874

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.24  E-value=0.039  Score=46.87  Aligned_cols=145  Identities=9%  Similarity=-0.011  Sum_probs=88.6

Q ss_pred             eEEEec--CC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcC-----CeEEEEecCCcee--
Q 022303          116 DQCRMK--RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG-----TRICIWRRNGLRS--  184 (299)
Q Consensus       116 ~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d-----~~i~v~d~~~~~~--  184 (299)
                      ..+++.  ++ .|+.+...+.|+.+|..+++.............++++++++.|+ +...     ..+.+++......  
T Consensus       140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~  219 (430)
T 3tc9_A          140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVI  219 (430)
T ss_dssp             CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSE
T ss_pred             CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeee
Confidence            456664  23 66666555889999988777655555444566699999999665 4431     1344455433211  


Q ss_pred             -eeeccCCccceeeeeccC-CCeEEEecCCCcEEEEEcCCcceeeecc-ccCCceeEEEeCCC-C-eEEEEeCCCcEEEE
Q 022303          185 -VFPSREGTFMKGLCMRYF-DPEAVVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLSED-Q-LIISGSSLGSIAIS  259 (299)
Q Consensus       185 -~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~-~-~l~~~~~dg~i~iw  259 (299)
                       .+...  .....+++.+. +..+++-..++.|..++...+....... ........++++|+ + ++++-...+.|..+
T Consensus       220 ~~l~~~--~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~  297 (430)
T 3tc9_A          220 TELTKG--QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRS  297 (430)
T ss_dssp             EEEEEC--SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eeeccC--CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEE
Confidence             12111  11224578884 4445555567889999988665422222 22245788999998 7 55555677889998


Q ss_pred             eCC
Q 022303          260 GLS  262 (299)
Q Consensus       260 d~~  262 (299)
                      +..
T Consensus       298 ~~d  300 (430)
T 3tc9_A          298 DYD  300 (430)
T ss_dssp             EEE
T ss_pred             eCC
Confidence            764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.17  E-value=0.017  Score=49.09  Aligned_cols=140  Identities=6%  Similarity=-0.064  Sum_probs=78.0

Q ss_pred             eeEEEEecC---CCEEEEEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCC-----cEEEEEcCCcce
Q 022303          154 ASLVDFDFD---ESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDG-----TARVFDMYSRKC  225 (299)
Q Consensus       154 ~~~~~~~~~---~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~  225 (299)
                      +..++++|+   +++.++...+.|+.+|..++..............+++.+++. |+.+...+     .+...+...+..
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~  219 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFT  219 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTC
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCee
Confidence            345889884   444445444899999987664322222222233568888888 44444321     133333322111


Q ss_pred             -eeeccccCCceeEEEeCC-C-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          226 -SQIIRMHCAPVTSLSLSE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       226 -~~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                       ...+ ........++++| + .++++-..++.|+.+|..+++....+........-..++|+|+|++|..+.
T Consensus       220 ~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad  291 (433)
T 4hw6_A          220 ERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY  291 (433)
T ss_dssp             CEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred             ccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence             0111 1234457788898 5 555555567889999998776633332221111345799999998665543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.15  E-value=0.0027  Score=57.56  Aligned_cols=162  Identities=14%  Similarity=0.138  Sum_probs=93.2

Q ss_pred             CCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-E-EcCCeEEEEecCC----ce-eeeeccCCccceeeeeccCC
Q 022303          131 DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGTRICIWRRNG----LR-SVFPSREGTFMKGLCMRYFD  203 (299)
Q Consensus       131 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~d~~i~v~d~~~----~~-~~~~~~~~~~~~~~~~~~~~  203 (299)
                      ...|+..++.+.+....+.....+..++|++.+..|+ + ...+.|+.+++.+    .. ..+..........+++.+.+
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~  464 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  464 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence            3577888887766655555445566799998777766 3 3467899999875    21 11111111112235666555


Q ss_pred             CeEE-EecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEe-CC-CcEEEEeCCCCceEEEeeccCCCCcE
Q 022303          204 PEAV-VGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SL-GSIAISGLSSDQRVATLRSTDCTGHI  279 (299)
Q Consensus       204 ~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~i  279 (299)
                      ..|+ +-...+.|.++++........+.........++++|. .+|+.+. .. +.|..+++. +.....+..... ...
T Consensus       465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d-G~~~~~l~~~~l-~~P  542 (699)
T 1n7d_A          465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENI-QWP  542 (699)
T ss_dssp             SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS-SCCCCEESCSSC-SSC
T ss_pred             CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC-CCCeeEEEeCCC-CCc
Confidence            5554 4455788999998754433333333345678999986 4444433 33 778888875 333333321111 156


Q ss_pred             EEEEccCCCCeEEee
Q 022303          280 ICLMYPQFLHMLFFL  294 (299)
Q Consensus       280 ~~~~~s~~g~~l~s~  294 (299)
                      +.|+|+|++..|+.+
T Consensus       543 nGlavd~~~~~LY~a  557 (699)
T 1n7d_A          543 NGITLDLLSGRLYWV  557 (699)
T ss_dssp             CCEEECTTTCCEEEE
T ss_pred             cEEEEeccCCEEEEE
Confidence            789999876665544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.15  E-value=0.077  Score=43.63  Aligned_cols=168  Identities=13%  Similarity=0.078  Sum_probs=98.2

Q ss_pred             CeeEEEec--CC-EEEEEeCCCcEEEEecCCceeEEEecC-CCceeEEEEecCCCEEE-E-EcCCeEEEEecCCcee-ee
Q 022303          114 GVDQCRMK--RG-LILTGVGDKVMRLWSLEGYKCVEEYSL-PNAASLVDFDFDESKIV-G-LIGTRICIWRRNGLRS-VF  186 (299)
Q Consensus       114 ~i~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~-~-~~d~~i~v~d~~~~~~-~~  186 (299)
                      ....++|.  ++ ++++-...+.|..++.........+.. -.....+++++.+..|+ + ...+.|.+.++.+... .+
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l  153 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL  153 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE
Confidence            45677773  34 444555678888888876554333332 23345588888666665 3 4467899999876532 22


Q ss_pred             eccCCccceeeeeccCCCeEE-EecCC-CcEEEEEcCCcceeeec-cccCCceeEEEeCCC-C-eEEEEeCCCcEEEEeC
Q 022303          187 PSREGTFMKGLCMRYFDPEAV-VGCED-GTARVFDMYSRKCSQII-RMHCAPVTSLSLSED-Q-LIISGSSLGSIAISGL  261 (299)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~-s~~~d-~~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~iwd~  261 (299)
                      ..........+++.+.+..++ +-... +.|..+++.. .....+ ...-...+.++++|+ . ++++-...+.|..+|+
T Consensus       154 ~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~  232 (349)
T 3v64_C          154 LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL  232 (349)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence            211112233567887666644 43344 7788888773 333333 223445789999976 4 4555556778999998


Q ss_pred             CCCceEEEeeccCCCCcEEEEEc
Q 022303          262 SSDQRVATLRSTDCTGHIICLMY  284 (299)
Q Consensus       262 ~~~~~~~~~~~~~~~~~i~~~~~  284 (299)
                      ........+.....  ...++++
T Consensus       233 dG~~~~~~~~~~~~--~P~giav  253 (349)
T 3v64_C          233 DGSHRKAVISQGLP--HPFAITV  253 (349)
T ss_dssp             TSCSCEEEECSSCS--SEEEEEE
T ss_pred             CCCceEEEEeCCCC--CceEEEE
Confidence            64332222222222  5677777

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.15  E-value=0.072  Score=43.19  Aligned_cols=156  Identities=13%  Similarity=0.050  Sum_probs=96.0

Q ss_pred             eeEEEe--cCC-EEEEEeCCCcEEEEecCCceeEEEe-cCCCceeEEEEecCCCEEE-EEc--CCeEEEEecCCce-eee
Q 022303          115 VDQCRM--KRG-LILTGVGDKVMRLWSLEGYKCVEEY-SLPNAASLVDFDFDESKIV-GLI--GTRICIWRRNGLR-SVF  186 (299)
Q Consensus       115 i~~~~~--~~~-~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~~~--d~~i~v~d~~~~~-~~~  186 (299)
                      ...+++  .++ +.++-...+.|.+++.........+ .....+..++++|.+..|+ +..  .+.|...+..... ..+
T Consensus        81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~  160 (318)
T 3sov_A           81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII  160 (318)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred             ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE
Confidence            344555  244 4455556778999987643322222 2234455699998777776 442  5788888887543 222


Q ss_pred             eccCCccceeeeeccCCCeEEE-ecCCCcEEEEEcCCcceeeec-cccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCC
Q 022303          187 PSREGTFMKGLCMRYFDPEAVV-GCEDGTARVFDMYSRKCSQII-RMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSD  264 (299)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~  264 (299)
                      ....-.....+++.+.+..|+. -...+.|..+|+.. .....+ .........+++..+.++.+-...+.|..++..+|
T Consensus       161 ~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          161 INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-CceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCC
Confidence            1112222335788887777554 45577899999873 332322 22344567788866666777777889999999877


Q ss_pred             ceEEEee
Q 022303          265 QRVATLR  271 (299)
Q Consensus       265 ~~~~~~~  271 (299)
                      +....+.
T Consensus       240 ~~~~~i~  246 (318)
T 3sov_A          240 EGLREIH  246 (318)
T ss_dssp             CSCEEEE
T ss_pred             CceEEEe
Confidence            7655554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.09  E-value=0.068  Score=43.30  Aligned_cols=149  Identities=5%  Similarity=-0.041  Sum_probs=92.2

Q ss_pred             eeEEEec--CCEEEEEe-CCCcEEEEecCCceeEEE-ecC----CC-c-eeE-EEE---ecCCCEEEEEc----------
Q 022303          115 VDQCRMK--RGLILTGV-GDKVMRLWSLEGYKCVEE-YSL----PN-A-ASL-VDF---DFDESKIVGLI----------  170 (299)
Q Consensus       115 i~~~~~~--~~~l~s~~-~dg~i~iwd~~~~~~~~~-~~~----~~-~-~~~-~~~---~~~~~~l~~~~----------  170 (299)
                      --++.|.  ++.|..++ ..++|..||...+..... +..    .+ . ... +.+   .++++++++..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            3456783  35555555 799999999986644333 322    11 1 223 888   68877766322          


Q ss_pred             ----CCeEEEEecC---Cceeeeecc----C-C---------ccceeeeeccCCCeEEEecCC-CcEEEEEcCCcceeee
Q 022303          171 ----GTRICIWRRN---GLRSVFPSR----E-G---------TFMKGLCMRYFDPEAVVGCED-GTARVFDMYSRKCSQI  228 (299)
Q Consensus       171 ----d~~i~v~d~~---~~~~~~~~~----~-~---------~~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~  228 (299)
                          +..+..||+.   +++..+...    . +         ....-+++.+.++-.++++.. +.|...+.. ++.+..
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~~  173 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVST  173 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEEE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEee
Confidence                5789999998   554322111    0 0         112235677777777877777 777777766 333332


Q ss_pred             cc------ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC
Q 022303          229 IR------MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD  264 (299)
Q Consensus       229 ~~------~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~  264 (299)
                      +.      ......+.|+++|+ ..|++....|.|.-+|+.+.
T Consensus       174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            21      11223679999998 77777766999999998743

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.03  E-value=0.13  Score=43.80  Aligned_cols=146  Identities=7%  Similarity=-0.087  Sum_probs=87.0

Q ss_pred             eeEEEe-cC---CEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCC-----eEEEEecCCce--
Q 022303          115 VDQCRM-KR---GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGT-----RICIWRRNGLR--  183 (299)
Q Consensus       115 i~~~~~-~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~-----~i~v~d~~~~~--  183 (299)
                      -..+++ ++   +.|+.+...+.|+.+|..+++..........+..++++++++++++...+     .+...+.....  
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~  220 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTE  220 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCC
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeec
Confidence            346777 42   46666555589999999888776555544456669999999954454422     23344432221  


Q ss_pred             -eeeeccCCccceeeeeccCCCeEE-EecCCCcEEEEEcCCcceeeec-c-ccCCceeEEEeCCC-C-eEEEEeCCCcEE
Q 022303          184 -SVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCSQII-R-MHCAPVTSLSLSED-Q-LIISGSSLGSIA  257 (299)
Q Consensus       184 -~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~-~-~~~~~i~~~~~~~~-~-~l~~~~~dg~i~  257 (299)
                       ..+..  ......+++.+.+..|+ +-..++.|..+|..++.....+ . ........++++|+ + ++++-...+.|+
T Consensus       221 ~~~~~~--~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~  298 (433)
T 4hw6_A          221 RLSLCN--ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY  298 (433)
T ss_dssp             EEEEEE--CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             cccccc--cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence             11111  11122357777444444 4446778999998877652222 1 11222346999998 6 555556678899


Q ss_pred             EEeCC
Q 022303          258 ISGLS  262 (299)
Q Consensus       258 iwd~~  262 (299)
                      .+++.
T Consensus       299 ~~~~d  303 (433)
T 4hw6_A          299 RVDYN  303 (433)
T ss_dssp             EEEBC
T ss_pred             EEeCC
Confidence            98865

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.83  E-value=0.006  Score=55.33  Aligned_cols=156  Identities=12%  Similarity=0.036  Sum_probs=92.2

Q ss_pred             EEEe--cCC-EEEEEeCCCcEEEEecCCceeEEEecCC-CceeEEEEecCCCEEE-EEc--CCeEEEEecCCcee-eeec
Q 022303          117 QCRM--KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLI--GTRICIWRRNGLRS-VFPS  188 (299)
Q Consensus       117 ~~~~--~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~--d~~i~v~d~~~~~~-~~~~  188 (299)
                      .+++  .++ ++++-...+.|.+.+.........+... .....++++|.+..|+ +..  .+.|.++++.+... ++..
T Consensus       457 glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~  536 (699)
T 1n7d_A          457 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  536 (699)
T ss_dssp             CEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC
T ss_pred             eEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe
Confidence            3555  344 4445456788999988754433333322 3344588988766655 332  36788887765432 2211


Q ss_pred             cCCccceeeeeccCCCeEE-EecCCCcEEEEEcCCcceeeecc---ccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCC
Q 022303          189 REGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCSQIIR---MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSD  264 (299)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~  264 (299)
                      ........+++.+.+..|+ +-...+.|..+|+... ....+.   ........|++..+.++++....+.|..+|..++
T Consensus       537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  615 (699)
T ss_dssp             SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTE
T ss_pred             CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCC
Confidence            1112233568888776654 4456678999998643 222222   1123345666666666777777889999999888


Q ss_pred             ceEEEeecc
Q 022303          265 QRVATLRST  273 (299)
Q Consensus       265 ~~~~~~~~~  273 (299)
                      +.+..+...
T Consensus       616 ~~~~~i~~~  624 (699)
T 1n7d_A          616 SDVNLLAEN  624 (699)
T ss_dssp             EEEECCCTT
T ss_pred             CceEEeecC
Confidence            887777543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.70  E-value=0.0011  Score=52.36  Aligned_cols=52  Identities=21%  Similarity=0.250  Sum_probs=47.8

Q ss_pred             cchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhc
Q 022303           21 RATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLH   72 (299)
Q Consensus        21 ~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~   72 (299)
                      +..+..+|.++...|++|+++.++.++..+|+.|+.++.+..+|+.++.+..
T Consensus         2 ~~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~   53 (312)
T 3l2o_B            2 ASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDL   53 (312)
T ss_dssp             CCHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSG
T ss_pred             cchhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccC
Confidence            4568889999999999999999999999999999999999999999888753

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.66  E-value=0.083  Score=45.52  Aligned_cols=138  Identities=9%  Similarity=0.051  Sum_probs=79.9

Q ss_pred             eEEEEec-CCCEEE-EEc-CCeEEEEecCCceeeeeccCC--c--cceeeee-------ccCCCeEEEecCCC-------
Q 022303          155 SLVDFDF-DESKIV-GLI-GTRICIWRRNGLRSVFPSREG--T--FMKGLCM-------RYFDPEAVVGCEDG-------  213 (299)
Q Consensus       155 ~~~~~~~-~~~~l~-~~~-d~~i~v~d~~~~~~~~~~~~~--~--~~~~~~~-------~~~~~~l~s~~~d~-------  213 (299)
                      ..++|+| +...|+ +.. .+.|++.|+.+.........+  .  ....+++       .+++..++++...+       
T Consensus       142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~  221 (496)
T 3kya_A          142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP  221 (496)
T ss_dssp             EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred             CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence            3589998 355555 444 367888998886532211111  1  1234677       88888666655443       


Q ss_pred             cEEEEEcCC-ccee-----eeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCC-------CCce-----------E
Q 022303          214 TARVFDMYS-RKCS-----QIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLS-------SDQR-----------V  267 (299)
Q Consensus       214 ~i~iwd~~~-~~~~-----~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~-------~~~~-----------~  267 (299)
                      .|.+++... +...     ..+.. ......++++|+  .++++-..++.|..+|+.       ++..           .
T Consensus       222 ~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~  300 (496)
T 3kya_A          222 SVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTF  300 (496)
T ss_dssp             EEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTE
T ss_pred             eEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccccc
Confidence            266666443 2221     22222 223567888995  556666678889999987       4543           1


Q ss_pred             EE-eeccCCCCcEEEEEccCCCCeEEee
Q 022303          268 AT-LRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       268 ~~-~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      .. +..... ...+.++|+|+|++|..+
T Consensus       301 ~~l~~~~~~-~~p~~ia~~p~G~~lYva  327 (496)
T 3kya_A          301 KQLFTIADP-SWEFQIFIHPTGKYAYFG  327 (496)
T ss_dssp             EEEEECSSS-SCCEEEEECTTSSEEEEE
T ss_pred             ceeEecCCC-CCceEEEEcCCCCEEEEE
Confidence            22 222221 156899999999965443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.65  E-value=0.34  Score=43.30  Aligned_cols=169  Identities=14%  Similarity=0.100  Sum_probs=101.8

Q ss_pred             CCEEEEEeCCCcEEEEecCCceeEEEec--CCCceeEEEEecCCCEEE-E-EcCCeEEEEecCCce-eeeeccCCcccee
Q 022303          122 RGLILTGVGDKVMRLWSLEGYKCVEEYS--LPNAASLVDFDFDESKIV-G-LIGTRICIWRRNGLR-SVFPSREGTFMKG  196 (299)
Q Consensus       122 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~-~-~~d~~i~v~d~~~~~-~~~~~~~~~~~~~  196 (299)
                      ..+|+.+ ....|+..++.+......+.  .-..+..++|++.+..|+ + ..++.|+.+++.+.. ..+..........
T Consensus         6 ~~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G   84 (628)
T 4a0p_A            6 EAFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG   84 (628)
T ss_dssp             CCEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred             CcEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence            3344443 45778888988655444333  224566799999877777 4 346799999887653 1111111122234


Q ss_pred             eeeccCCCeE-EEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEe--CCCcEEEEeCCCCceEEEeec
Q 022303          197 LCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS--SLGSIAISGLSSDQRVATLRS  272 (299)
Q Consensus       197 ~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~--~dg~i~iwd~~~~~~~~~~~~  272 (299)
                      +++.+.+..| ++-...+.|.+.++........+...-.....|+++|. ..|....  ..+.|...++.... ...+-.
T Consensus        85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~  163 (628)
T 4a0p_A           85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVP  163 (628)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEEC
T ss_pred             EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEEC
Confidence            6777666665 44455778999998743322222233455789999986 5555544  35678888875433 333322


Q ss_pred             cCCCCcEEEEEccCCCCeEEee
Q 022303          273 TDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       273 ~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      .-.  ....+++++++..|..+
T Consensus       164 ~~~--~P~GlalD~~~~~LY~a  183 (628)
T 4a0p_A          164 NVG--RANGLTIDYAKRRLYWT  183 (628)
T ss_dssp             SCS--SEEEEEEETTTTEEEEE
T ss_pred             CCC--CcceEEEccccCEEEEE
Confidence            222  78899999987766654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.63  E-value=0.2  Score=40.42  Aligned_cols=171  Identities=10%  Similarity=-0.008  Sum_probs=96.2

Q ss_pred             cCeeEEEec--CC-EEEEEeCCCcEEEEecCC----ceeEEEecCC-CceeEEEEecCCCEEE-E-EcCCeEEEEecCCc
Q 022303          113 VGVDQCRMK--RG-LILTGVGDKVMRLWSLEG----YKCVEEYSLP-NAASLVDFDFDESKIV-G-LIGTRICIWRRNGL  182 (299)
Q Consensus       113 ~~i~~~~~~--~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~~-~~~~~~~~~~~~~~l~-~-~~d~~i~v~d~~~~  182 (299)
                      .....+.|.  ++ ++++-..++.|..++...    ......+... ..+..+++++.+..|+ + ...+.|.++++.+.
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            345677783  34 445555668999999875    2222223222 3344588887666555 4 45779999998765


Q ss_pred             e-eeeeccCCccceeeeeccCCCeEEEecC-C-CcEEEEEcCCcceeeecc-ccCCceeEEEeCCC-Ce-EEEEeCCCcE
Q 022303          183 R-SVFPSREGTFMKGLCMRYFDPEAVVGCE-D-GTARVFDMYSRKCSQIIR-MHCAPVTSLSLSED-QL-IISGSSLGSI  256 (299)
Q Consensus       183 ~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d-~~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~-~~-l~~~~~dg~i  256 (299)
                      . ..+..........+++.+.+..++.... . +.|...++. ++....+. ..-.....++++++ .. +++-+..+.|
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I  188 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  188 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeE
Confidence            3 2222111122334678877666554443 2 678888876 44333332 23356789999976 44 4555567789


Q ss_pred             EEEeCCCCceEEEeec-cCCCCcEEEEEcc
Q 022303          257 AISGLSSDQRVATLRS-TDCTGHIICLMYP  285 (299)
Q Consensus       257 ~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s  285 (299)
                      ..+|+.. .....+.. ........++++.
T Consensus       189 ~~~d~dg-~~~~~~~~~~~~~~~P~giav~  217 (316)
T 1ijq_A          189 SSIDVNG-GNRKTILEDEKRLAHPFSLAVF  217 (316)
T ss_dssp             EEEETTS-CSCEEEEECTTTTSSEEEEEEE
T ss_pred             EEEecCC-CceEEEeecCCccCCcEEEEEE
Confidence            9999864 33333322 1111146777774

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.60  E-value=0.2  Score=39.93  Aligned_cols=144  Identities=11%  Similarity=0.051  Sum_probs=72.7

Q ss_pred             cCCEEEEEeCC-----CcEEEEecCCce---eEEEecCCCceeE-EEEecCCCEEE-EEcC-----CeEEEEecCCce-e
Q 022303          121 KRGLILTGVGD-----KVMRLWSLEGYK---CVEEYSLPNAASL-VDFDFDESKIV-GLIG-----TRICIWRRNGLR-S  184 (299)
Q Consensus       121 ~~~~l~s~~~d-----g~i~iwd~~~~~---~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d-----~~i~v~d~~~~~-~  184 (299)
                      .+.+++.|+.+     ..+.+||..+.+   ....-..+..... .+...++++++ |+.+     ..+.+||+.+.. .
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~  141 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWS  141 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence            33366666654     468899988766   3332222222111 22223555555 5433     368899988765 1


Q ss_pred             eeeccCCccceeeeeccCCCeEEEecCC-----CcEEEEEcCCcce--eeeccccCCceeEEEeCCCCeEEEEeCC----
Q 022303          185 VFPSREGTFMKGLCMRYFDPEAVVGCED-----GTARVFDMYSRKC--SQIIRMHCAPVTSLSLSEDQLIISGSSL----  253 (299)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~l~~~~~d----  253 (299)
                      .............+...++..++.|+.+     ..+.+||+.+.+-  +..+..... -.+++...+++++.|+.+    
T Consensus       142 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~  220 (301)
T 2vpj_A          142 MLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRS-GAGVALLNDHIYVVGGFDGTAH  220 (301)
T ss_dssp             EEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECCBCSSSB
T ss_pred             ECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccc-cceEEEECCEEEEEeCCCCCcc
Confidence            1111111111111222344445666644     4588899876532  222211111 122333344677777764    


Q ss_pred             -CcEEEEeCCCCc
Q 022303          254 -GSIAISGLSSDQ  265 (299)
Q Consensus       254 -g~i~iwd~~~~~  265 (299)
                       ..+.+||+.+.+
T Consensus       221 ~~~v~~yd~~~~~  233 (301)
T 2vpj_A          221 LSSVEAYNIRTDS  233 (301)
T ss_dssp             CCCEEEEETTTTE
T ss_pred             cceEEEEeCCCCc
Confidence             468999998765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.60  E-value=0.43  Score=43.84  Aligned_cols=174  Identities=10%  Similarity=0.019  Sum_probs=96.7

Q ss_pred             ccCeeEEEec--CC-EEEEEeCCCcEEEEecCCc----eeEEEec-CCCceeEEEEecCCCEEE--EEcCCeEEEEecCC
Q 022303          112 SVGVDQCRMK--RG-LILTGVGDKVMRLWSLEGY----KCVEEYS-LPNAASLVDFDFDESKIV--GLIGTRICIWRRNG  181 (299)
Q Consensus       112 ~~~i~~~~~~--~~-~l~s~~~dg~i~iwd~~~~----~~~~~~~-~~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~  181 (299)
                      ...+..+++.  ++ ++++-...+.|+.+++...    .....+. .-..+..+++++.+..|+  -...+.|.+.++.+
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            3445667772  44 4445555678888887642    2222333 223344588988887666  34467999999986


Q ss_pred             cee-eeeccCCccceeeeeccCCCeEEEecC--CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEE-eCCCcE
Q 022303          182 LRS-VFPSREGTFMKGLCMRYFDPEAVVGCE--DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG-SSLGSI  256 (299)
Q Consensus       182 ~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~-~~dg~i  256 (299)
                      ... ++..........+++.+....|+....  .+.|...++.-......+...-.....|++++. ..|..+ ...+.|
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I  582 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  582 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence            642 222212222335688887666655442  367888888733332223233356889999976 544444 456789


Q ss_pred             EEEeCCCCceEEEeeccCCCCcEEEEEcc
Q 022303          257 AISGLSSDQRVATLRSTDCTGHIICLMYP  285 (299)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  285 (299)
                      ...++........+..........+|++.
T Consensus       583 ~~~d~dG~~~~~v~~~~~~l~~P~glav~  611 (791)
T 3m0c_C          583 SSIDVNGGNRKTILEDEKRLAHPFSLAVF  611 (791)
T ss_dssp             EEEETTSCSCEEEEECTTTTSSEEEEEEE
T ss_pred             EEEecCCCceEEEecCCCccCCCCEEEEe
Confidence            99998644333333321111134566653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.51  E-value=0.25  Score=40.06  Aligned_cols=138  Identities=12%  Similarity=0.021  Sum_probs=86.3

Q ss_pred             EEEEecCCCEEE-EE-cCCeEEEEecCCce-eeeeccCC-----c---cceeeee---ccCCCeEEEec-----------
Q 022303          156 LVDFDFDESKIV-GL-IGTRICIWRRNGLR-SVFPSREG-----T---FMKGLCM---RYFDPEAVVGC-----------  210 (299)
Q Consensus       156 ~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~-~~~~~~~~-----~---~~~~~~~---~~~~~~l~s~~-----------  210 (299)
                      ...|++....+. ++ ..++|..||..++. ... ...+     .   ....+.+   .+.+..+++..           
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            378887666665 55 58999999997543 222 1111     1   1234456   45543444332           


Q ss_pred             --CCCcEEEEEcC---Ccceeeecc--c-----------cCCceeEEEeCCC-CeEEEEeCC-CcEEEEeCCCCceEEEe
Q 022303          211 --EDGTARVFDMY---SRKCSQIIR--M-----------HCAPVTSLSLSED-QLIISGSSL-GSIAISGLSSDQRVATL  270 (299)
Q Consensus       211 --~d~~i~iwd~~---~~~~~~~~~--~-----------~~~~i~~~~~~~~-~~l~~~~~d-g~i~iwd~~~~~~~~~~  270 (299)
                        .+..+..||+.   +++.+....  .           .......++..++ +..++++.. +.|...+.. |+.+..+
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~  174 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVSTF  174 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEEEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEeee
Confidence              26779999999   777665443  1           1124789999998 888888888 888888875 4433333


Q ss_pred             eccC----CCCcEEEEEccCCCCeEEeee
Q 022303          271 RSTD----CTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       271 ~~~~----~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ....    .....+.++++|+|+.|++..
T Consensus       175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~  203 (334)
T 2p9w_A          175 AWESGNGGQRPGYSGITFDPHSNKLIAFG  203 (334)
T ss_dssp             EECCCCSSSCCSCSEEEEETTTTEEEEES
T ss_pred             eecCCCcccccCcceEEEeCCCCEEEEEc
Confidence            2111    101367999999998887753

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.37  E-value=0.28  Score=39.07  Aligned_cols=143  Identities=6%  Similarity=-0.040  Sum_probs=72.6

Q ss_pred             cCCEEEEEeCC-----CcEEEEecCCceeEEEecCCCce--eEEEEecCCCEEE-EEcCC-----eEEEEecCCcee-ee
Q 022303          121 KRGLILTGVGD-----KVMRLWSLEGYKCVEEYSLPNAA--SLVDFDFDESKIV-GLIGT-----RICIWRRNGLRS-VF  186 (299)
Q Consensus       121 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~-~~~d~-----~i~v~d~~~~~~-~~  186 (299)
                      .+.+++.|+.+     ..+.+||..+.+....-..+...  ..++. .+++.++ |+.++     .+.+||+.+..- ..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~  139 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV  139 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence            33366666654     35888998877654433222221  12222 3555555 65543     688899887651 11


Q ss_pred             eccCCccceeeeeccCCCeEEEecCC-------CcEEEEEcCCcc--eeeeccccCCceeEEEeCCCCeEEEEeCC----
Q 022303          187 PSREGTFMKGLCMRYFDPEAVVGCED-------GTARVFDMYSRK--CSQIIRMHCAPVTSLSLSEDQLIISGSSL----  253 (299)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~d----  253 (299)
                      ...........+...++..++.|+.+       ..+.+||+.+.+  .+..+..... -.+++...+++++.|+.+    
T Consensus       140 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~  218 (302)
T 2xn4_A          140 APMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS-GAGVGVLNNLLYAVGGHDGPLV  218 (302)
T ss_dssp             CCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECCBSSSSB
T ss_pred             CCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccc-cccEEEECCEEEEECCCCCCcc
Confidence            11111111111222344445555532       358889987653  2222221111 123333345677777754    


Q ss_pred             -CcEEEEeCCCCc
Q 022303          254 -GSIAISGLSSDQ  265 (299)
Q Consensus       254 -g~i~iwd~~~~~  265 (299)
                       ..+.+||+.+++
T Consensus       219 ~~~~~~yd~~~~~  231 (302)
T 2xn4_A          219 RKSVEVYDPTTNA  231 (302)
T ss_dssp             CCCEEEEETTTTE
T ss_pred             cceEEEEeCCCCC
Confidence             368999998764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.35  E-value=0.22  Score=39.74  Aligned_cols=172  Identities=9%  Similarity=-0.001  Sum_probs=84.1

Q ss_pred             cCCEEEEEeCC----CcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcC------CeEEEEecCCcee-eee
Q 022303          121 KRGLILTGVGD----KVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIG------TRICIWRRNGLRS-VFP  187 (299)
Q Consensus       121 ~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d------~~i~v~d~~~~~~-~~~  187 (299)
                      .+.+++.|+.+    ..+.+||..+.+....-..+..... .+...++++++ |+.+      ..+.+||+.+..- ...
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~  134 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP  134 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence            33366666654    5788899988765443332222221 22223555555 5544      3689999987751 111


Q ss_pred             ccCCccceeeeeccCCCeEEEecC---------CCcEEEEEcCCcc--eeeeccccCCceeEEEeCCCCeEEEEeCC---
Q 022303          188 SREGTFMKGLCMRYFDPEAVVGCE---------DGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSEDQLIISGSSL---  253 (299)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~l~s~~~---------d~~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~d---  253 (299)
                      ..........+....+..++.|+.         -..+.+||+.+.+  .+..+..... -.+++...+++++.|+.+   
T Consensus       135 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~  213 (306)
T 3ii7_A          135 SMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARK-NHGLVFVKDKIFAVGGQNGLG  213 (306)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECCEETTE
T ss_pred             CCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhh-cceEEEECCEEEEEeCCCCCC
Confidence            111111111122234444555543         3458899988653  2222211111 122333345677777654   


Q ss_pred             --CcEEEEeCCCCceEEEeeccC-CCCcEEEEEccCCCCeEEeeec
Q 022303          254 --GSIAISGLSSDQRVATLRSTD-CTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       254 --g~i~iwd~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                        ..+.+||+.+.+-. .+.... .......+.+  ++++++.|+.
T Consensus       214 ~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~~~--~~~i~v~GG~  256 (306)
T 3ii7_A          214 GLDNVEYYDIKLNEWK-MVSPMPWKGVTVKCAAV--GSIVYVLAGF  256 (306)
T ss_dssp             EBCCEEEEETTTTEEE-ECCCCSCCBSCCEEEEE--TTEEEEEECB
T ss_pred             CCceEEEeeCCCCcEE-ECCCCCCCccceeEEEE--CCEEEEEeCc
Confidence              46889999876422 221111 1001222233  6777777764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.28  E-value=0.58  Score=41.81  Aligned_cols=157  Identities=13%  Similarity=0.038  Sum_probs=95.5

Q ss_pred             CeeEEEe--cCC-EEEEEeCCCcEEEEecCCceeEEEe-cCCCceeEEEEecCCCEEE-EEc--CCeEEEEecCCceeee
Q 022303          114 GVDQCRM--KRG-LILTGVGDKVMRLWSLEGYKCVEEY-SLPNAASLVDFDFDESKIV-GLI--GTRICIWRRNGLRSVF  186 (299)
Q Consensus       114 ~i~~~~~--~~~-~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~~~--d~~i~v~d~~~~~~~~  186 (299)
                      ....+++  ..+ +.++-...+.|.+.++........+ ..-..+..++++|....|+ +..  .+.|...++.+.....
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~  160 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT  160 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE
Confidence            3445555  344 4455556678888888644322222 2334556699999766766 442  4688888887653221


Q ss_pred             eccCCccceeeeeccCCCeEEEe-cCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCc
Q 022303          187 PSREGTFMKGLCMRYFDPEAVVG-CEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQ  265 (299)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  265 (299)
                      ..........+++.+.+..|+.+ ...+.|..+|+..... ..+.........+++..+.++++-...+.|...|..+++
T Consensus       161 l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          161 LVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             EECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCC
Confidence            11122223356788877775554 4567899999874333 333333344668888766666666678899999987776


Q ss_pred             eEEEee
Q 022303          266 RVATLR  271 (299)
Q Consensus       266 ~~~~~~  271 (299)
                      ....+.
T Consensus       240 ~~~~l~  245 (628)
T 4a0p_A          240 NRTIIQ  245 (628)
T ss_dssp             SCEEEE
T ss_pred             ceEEEe
Confidence            555443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.25  E-value=0.43  Score=39.99  Aligned_cols=174  Identities=10%  Similarity=0.027  Sum_probs=96.7

Q ss_pred             cccCeeEEEec--CCE-EEEEeCCCcEEEEecCCc----eeEEEec-CCCceeEEEEecCCCEEE--EEcCCeEEEEecC
Q 022303          111 HSVGVDQCRMK--RGL-ILTGVGDKVMRLWSLEGY----KCVEEYS-LPNAASLVDFDFDESKIV--GLIGTRICIWRRN  180 (299)
Q Consensus       111 h~~~i~~~~~~--~~~-l~s~~~dg~i~iwd~~~~----~~~~~~~-~~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~  180 (299)
                      ....+..++|.  ++. .++-...+.|..+++...    .....+. .-..+..+++++.+..|+  -...+.|.+.++.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            34456778883  444 444455678888887652    2222233 223344588888665555  3456789999988


Q ss_pred             Ccee-eeeccCCccceeeeeccCCCeEEEec--CCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEE-eCCCc
Q 022303          181 GLRS-VFPSREGTFMKGLCMRYFDPEAVVGC--EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG-SSLGS  255 (299)
Q Consensus       181 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~-~~dg~  255 (299)
                      +... .+..........+++.+.+..++...  ..+.|...++.-..........-...+.|+++++ ..|..+ ...+.
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~  269 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  269 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence            6642 22211222233567887766655443  2477888888733322222233356889999976 544444 55778


Q ss_pred             EEEEeCCCCceEEEeeccCCCCcEEEEEc
Q 022303          256 IAISGLSSDQRVATLRSTDCTGHIICLMY  284 (299)
Q Consensus       256 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  284 (299)
                      |..+|+...................++++
T Consensus       270 I~~~d~dG~~~~~~~~~~~~l~~P~gl~v  298 (400)
T 3p5b_L          270 ISSIDVNGGNRKTILEDEKRLAHPFSLAV  298 (400)
T ss_dssp             EEEEETTSCCCEEEEECSSTTSSEEEEEE
T ss_pred             EEEEeCCCCccEEEEeCCCCCCCCEEEEE
Confidence            99999864332222222111114556666

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.22  E-value=0.62  Score=41.54  Aligned_cols=162  Identities=12%  Similarity=0.048  Sum_probs=91.6

Q ss_pred             CCcEEEEecCCce--eEEEecCCCceeEEEEecCCCEEE-EEc-CCeEEEEecCCce--eeeeccCCccceeeeeccCCC
Q 022303          131 DKVMRLWSLEGYK--CVEEYSLPNAASLVDFDFDESKIV-GLI-GTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDP  204 (299)
Q Consensus       131 dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~-~~~-d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~  204 (299)
                      ...|+..++....  .......-..+..+++++.+..|+ +.. .+.|..+++.+..  .......-.....+++.+.+.
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~   96 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   96 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence            4667777776542  222333445567799999877776 443 5788888887652  111111112233567877666


Q ss_pred             eEE-EecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC--CCcEEEEeCCCCceEEEeeccCCCCcEE
Q 022303          205 EAV-VGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS--LGSIAISGLSSDQRVATLRSTDCTGHII  280 (299)
Q Consensus       205 ~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~i~  280 (299)
                      .++ +-...+.|.+.++........+...-.....|+++|. ..|.....  .+.|...++. |.....+-..... ...
T Consensus        97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~-~P~  174 (619)
T 3s94_A           97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIY-WPN  174 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCS-SEE
T ss_pred             EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCC-CCc
Confidence            644 4556788999998743322222233455788999986 55544442  4667777765 4433333222221 689


Q ss_pred             EEEccCCCCeEEee
Q 022303          281 CLMYPQFLHMLFFL  294 (299)
Q Consensus       281 ~~~~s~~g~~l~s~  294 (299)
                      .+++++++..|..+
T Consensus       175 Glald~~~~~LY~a  188 (619)
T 3s94_A          175 GLTLDYEEQKLYWA  188 (619)
T ss_dssp             EEEEETTTTEEEEE
T ss_pred             EEEEEccCCEEEEE
Confidence            99999877666554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.13  E-value=0.24  Score=44.48  Aligned_cols=125  Identities=13%  Similarity=0.092  Sum_probs=71.1

Q ss_pred             CCceeEEEecCCCceeEEEEec-CCCEEE-EEcCC-----------eEEEEecCCcee----eeeccCCccceeeeeccC
Q 022303          140 EGYKCVEEYSLPNAASLVDFDF-DESKIV-GLIGT-----------RICIWRRNGLRS----VFPSREGTFMKGLCMRYF  202 (299)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~-~~~d~-----------~i~v~d~~~~~~----~~~~~~~~~~~~~~~~~~  202 (299)
                      .+++.......+......++.+ ++++++ |+.+.           .+.+||..+..-    .............++..+
T Consensus       174 ~~~~W~~~~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~  253 (656)
T 1k3i_A          174 GLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN  253 (656)
T ss_dssp             TSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT
T ss_pred             CCCeeeeeccCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCC
Confidence            3444333333333344577777 777776 65432           688999987651    111111111112355567


Q ss_pred             CCeEEEec-CCCcEEEEEcCCcce--eeeccccCCceeEEEeCCC-CeEEEEe-CC-----CcEEEEeCCCCc
Q 022303          203 DPEAVVGC-EDGTARVFDMYSRKC--SQIIRMHCAPVTSLSLSED-QLIISGS-SL-----GSIAISGLSSDQ  265 (299)
Q Consensus       203 ~~~l~s~~-~d~~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~-~~l~~~~-~d-----g~i~iwd~~~~~  265 (299)
                      +..++.|+ .+..+.+||..+.+-  +..+..... -.+++..++ ++++.|+ .+     ..+.+||..+++
T Consensus       254 g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          254 GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             CCEEEeCCCCCCceEEecCcCCceeECCCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            77788887 456799999886542  222222122 234445555 8888888 44     569999998765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.99  E-value=0.58  Score=39.33  Aligned_cols=133  Identities=14%  Similarity=0.094  Sum_probs=80.9

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCC----C-ceeEEEEecCCCEEEEEcCCeEEEEecCCcee--------------
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLP----N-AASLVDFDFDESKIVGLIGTRICIWRRNGLRS--------------  184 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~-~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~--------------  184 (299)
                      .++.+- ++.||.-++.....-+.+..+    - .+..+..+|+|++|+...+..|.|-.+..+..              
T Consensus        34 ~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~  112 (452)
T 3pbp_A           34 RIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIF  112 (452)
T ss_dssp             EEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEE
T ss_pred             EEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccccccee
Confidence            344333 378888887744434444433    1 34559999999999988888999998873210              


Q ss_pred             eeecc------CCccceeeeeccCCCe---EEEecCCCcEEEEEcCCcc--eeeecc---------ccCCceeEEEeCCC
Q 022303          185 VFPSR------EGTFMKGLCMRYFDPE---AVVGCEDGTARVFDMYSRK--CSQIIR---------MHCAPVTSLSLSED  244 (299)
Q Consensus       185 ~~~~~------~~~~~~~~~~~~~~~~---l~s~~~d~~i~iwd~~~~~--~~~~~~---------~~~~~i~~~~~~~~  244 (299)
                      .+...      ...+. -+-|+|.+..   |++-..|+.|++||+....  +. .+.         .....|.+++|.++
T Consensus       113 ty~l~~~~~~~~s~I~-qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~  190 (452)
T 3pbp_A          113 HYSIDEEEVGPKSSIK-KVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKD  190 (452)
T ss_dssp             EEEGGGCC--CCCCEE-EEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTT
T ss_pred             EEEcCCcccCCCCcee-EEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCC
Confidence            11111      11122 3467777554   8999999999999998522  11 221         12256778888876


Q ss_pred             -Ce--EEEEeCCCcEEEE
Q 022303          245 -QL--IISGSSLGSIAIS  259 (299)
Q Consensus       245 -~~--l~~~~~dg~i~iw  259 (299)
                       -.  +++.+.+|.|+-.
T Consensus       191 ~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          191 GLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             SSCEEEEECTTSCEEEEE
T ss_pred             CcEEEEEecCCCCCEEEE
Confidence             33  3334466766543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.93  E-value=0.48  Score=37.75  Aligned_cols=141  Identities=9%  Similarity=-0.018  Sum_probs=71.4

Q ss_pred             EEEEEeC--CCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcC----CeEEEEecCCce-eeeeccCCccc
Q 022303          124 LILTGVG--DKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIG----TRICIWRRNGLR-SVFPSREGTFM  194 (299)
Q Consensus       124 ~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d----~~i~v~d~~~~~-~~~~~~~~~~~  194 (299)
                      +++.|+.  ...+.+||..+.+....-..+..... .....++.+++ |+.+    ..+.+||+.+.. ...........
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~   93 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD   93 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence            4555554  35788999988765433222221111 22223555555 5543    578899998775 21211111111


Q ss_pred             eeeeeccCCCeEEEecCC------CcEEEEEcCCcce--eeeccccCCceeEEEeCCCCeEEEEeC---------CCcEE
Q 022303          195 KGLCMRYFDPEAVVGCED------GTARVFDMYSRKC--SQIIRMHCAPVTSLSLSEDQLIISGSS---------LGSIA  257 (299)
Q Consensus       195 ~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~l~~~~~---------dg~i~  257 (299)
                      ...+....+..++.|+.+      ..+.+||+.+.+=  +..+..... -.+++...+++++.|+.         -..+.
T Consensus        94 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  172 (306)
T 3ii7_A           94 SLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRC-SHGMVEANGLIYVCGGSLGNNVSGRVLNSCE  172 (306)
T ss_dssp             SCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECCEESCTTTCEECCCEE
T ss_pred             ceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcc-eeEEEEECCEEEEECCCCCCCCcccccceEE
Confidence            111222344446666654      4588999886542  222211111 12223334466666654         34588


Q ss_pred             EEeCCCCc
Q 022303          258 ISGLSSDQ  265 (299)
Q Consensus       258 iwd~~~~~  265 (299)
                      +||+.+.+
T Consensus       173 ~yd~~~~~  180 (306)
T 3ii7_A          173 VYDPATET  180 (306)
T ss_dssp             EEETTTTE
T ss_pred             EeCCCCCe
Confidence            99998764

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.90  E-value=0.54  Score=38.59  Aligned_cols=99  Identities=13%  Similarity=0.120  Sum_probs=55.2

Q ss_pred             CceeEEEEecCCCEEEEEcCCeEEEEecCCceeeee-cc----CCccceeeeeccC---CCeEEEecC-C-----CcEEE
Q 022303          152 NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFP-SR----EGTFMKGLCMRYF---DPEAVVGCE-D-----GTARV  217 (299)
Q Consensus       152 ~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~-~~----~~~~~~~~~~~~~---~~~l~s~~~-d-----~~i~i  217 (299)
                      .....++|.|+++++++..++.|++++ ......+. ..    .......++++++   +..|+.+.. .     +.|..
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r  109 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR  109 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred             CCceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence            455679999999877787889999998 33221111 10    1112234577776   455544432 1     56777


Q ss_pred             EEcCCcc-----ee-eecc---ccCCceeEEEeCCC-CeEEEEe
Q 022303          218 FDMYSRK-----CS-QIIR---MHCAPVTSLSLSED-QLIISGS  251 (299)
Q Consensus       218 wd~~~~~-----~~-~~~~---~~~~~i~~~~~~~~-~~l~~~~  251 (299)
                      ++...+.     .+ ..+.   ........++|.|+ .++++.+
T Consensus       110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            8776431     11 1122   11123468999999 6555543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.86  E-value=0.49  Score=37.81  Aligned_cols=132  Identities=7%  Similarity=-0.050  Sum_probs=65.9

Q ss_pred             CcEEEEecCCceeEEEecCCCce--eEEEEecCCCEEE-EEcC-----CeEEEEecCCcee-eeeccCCccceeeeeccC
Q 022303          132 KVMRLWSLEGYKCVEEYSLPNAA--SLVDFDFDESKIV-GLIG-----TRICIWRRNGLRS-VFPSREGTFMKGLCMRYF  202 (299)
Q Consensus       132 g~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~-~~~d-----~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~  202 (299)
                      ..+.+||..+.+....-..+...  ..++. .++++++ |+.+     ..+.+||+.+..- .............+....
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~  168 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLN  168 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEET
T ss_pred             ceEEEECCCCCeEeECCCCCcCccccEEEE-ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEEC
Confidence            46888998877654332222211  12222 2555555 4432     3688999987651 111111111111122224


Q ss_pred             CCeEEEecCC-----CcEEEEEcCCcce--eeeccccCCceeEEEeCCCCeEEEEeCC-----CcEEEEeCCCCc
Q 022303          203 DPEAVVGCED-----GTARVFDMYSRKC--SQIIRMHCAPVTSLSLSEDQLIISGSSL-----GSIAISGLSSDQ  265 (299)
Q Consensus       203 ~~~l~s~~~d-----~~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~  265 (299)
                      +..++.|+.+     ..+.+||+.+.+=  +..+..... -.+++...+++++.|+.+     ..+.+||+.+.+
T Consensus       169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS-GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB-SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc-cceEEEECCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            4445666544     4588899876532  222211111 122333344677777664     568999998764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.83  E-value=0.45  Score=37.80  Aligned_cols=143  Identities=10%  Similarity=-0.063  Sum_probs=72.2

Q ss_pred             CC-EEEEEeCC-----CcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcC-----CeEEEEecCCcee-eee
Q 022303          122 RG-LILTGVGD-----KVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIG-----TRICIWRRNGLRS-VFP  187 (299)
Q Consensus       122 ~~-~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d-----~~i~v~d~~~~~~-~~~  187 (299)
                      ++ +++.|+.+     ..+.+||..+.+....-..+..... .+...++++++ |+.+     ..+.+||+.+..- ...
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~  191 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT  191 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC
Confidence            44 55556543     3588899887765443222222211 22223555555 5543     4688999987752 111


Q ss_pred             ccCCccceeeeeccCCCeEEEecCC-----CcEEEEEcCCcce--eeeccccCCceeEEEeCCCCeEEEEeCC-----Cc
Q 022303          188 SREGTFMKGLCMRYFDPEAVVGCED-----GTARVFDMYSRKC--SQIIRMHCAPVTSLSLSEDQLIISGSSL-----GS  255 (299)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~l~~~~~d-----g~  255 (299)
                      ..........+...++..++.|+.+     ..+.+||+.+.+-  +..+...... .+++...+++++.|+.+     ..
T Consensus       192 ~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~~~~~~  270 (301)
T 2vpj_A          192 PMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY-VGATVLRGRLYAIAGYDGNSLLSS  270 (301)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCBCSSSBEEE
T ss_pred             CCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc-eeEEEECCEEEEEcCcCCCccccc
Confidence            1111111111222344446666653     4688999886542  2222111111 22233344677777765     35


Q ss_pred             EEEEeCCCCc
Q 022303          256 IAISGLSSDQ  265 (299)
Q Consensus       256 i~iwd~~~~~  265 (299)
                      +.+||+.+.+
T Consensus       271 v~~yd~~~~~  280 (301)
T 2vpj_A          271 IECYDPIIDS  280 (301)
T ss_dssp             EEEEETTTTE
T ss_pred             EEEEcCCCCe
Confidence            7888987654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.75  E-value=1  Score=40.15  Aligned_cols=159  Identities=13%  Similarity=0.063  Sum_probs=92.5

Q ss_pred             cCeeEEEec--CC-EEEEEeCCCcEEEEecCCceeEEEe-cCCCceeEEEEecCCCEEE-EEc--CCeEEEEecCCce-e
Q 022303          113 VGVDQCRMK--RG-LILTGVGDKVMRLWSLEGYKCVEEY-SLPNAASLVDFDFDESKIV-GLI--GTRICIWRRNGLR-S  184 (299)
Q Consensus       113 ~~i~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~~~--d~~i~v~d~~~~~-~  184 (299)
                      .....+++.  ++ +.++-...+.|.+.+.........+ ..-..+..++++|.+..|+ +..  .+.|...++.+.. .
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~  163 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF  163 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence            355667772  45 5555566789999998754332222 2223455699999877666 443  4577777776543 2


Q ss_pred             eeeccCCccceeeeeccCCCeEEEe-cCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 022303          185 VFPSREGTFMKGLCMRYFDPEAVVG-CEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSS  263 (299)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~  263 (299)
                      .+..........+++.+.+..|+.+ ...+.|...|+..................|++.++.++++-...+.|...|..+
T Consensus       164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~t  243 (619)
T 3s94_A          164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYT  243 (619)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESSS
T ss_pred             EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCC
Confidence            2221122223356788777775544 456778888886432222222122334577777676666666788999999988


Q ss_pred             CceEEEee
Q 022303          264 DQRVATLR  271 (299)
Q Consensus       264 ~~~~~~~~  271 (299)
                      ++....+.
T Consensus       244 g~~~~~i~  251 (619)
T 3s94_A          244 GEGLREIH  251 (619)
T ss_dssp             CCCCEECC
T ss_pred             CcccEEEe
Confidence            76555443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.72  E-value=0.64  Score=37.63  Aligned_cols=177  Identities=5%  Similarity=-0.091  Sum_probs=91.0

Q ss_pred             cCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEec-C-CCceeEEEEecCCCEEEEEcCCeEEEE-ecCCce-eeee
Q 022303          113 VGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYS-L-PNAASLVDFDFDESKIVGLIGTRICIW-RRNGLR-SVFP  187 (299)
Q Consensus       113 ~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~d~~i~v~-d~~~~~-~~~~  187 (299)
                      +.+..+.+ +++.++.++.+|.|.. ..+.++.-.... . ......+.+.+++.+++.+.++.++.- |-.... ....
T Consensus       122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~  200 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN  200 (327)
T ss_dssp             SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE
T ss_pred             CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC
Confidence            45667766 5554444455665432 122233222222 2 233445888898888876666665543 321111 1111


Q ss_pred             ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc----ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022303          188 SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR----MHCAPVTSLSLSED-QLIISGSSLGSIAISGLS  262 (299)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~  262 (299)
                      .........+.+.+.+. ++.++.+|.+.+.+...++.-..+.    .....+..+.+.++ .+++++ .+|.| ++...
T Consensus       201 ~~~~~~~~~~~~~~~g~-~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~D  277 (327)
T 2xbg_A          201 RTTSRRLHNMGFTPDGR-LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQD  277 (327)
T ss_dssp             CCSSSCEEEEEECTTSC-EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESS
T ss_pred             CCCCCccceeEECCCCC-EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCC
Confidence            11111122334555544 4555667877776433233222221    12235888988877 655554 47766 45555


Q ss_pred             CCceEEEeecc---CCCCcEEEEEccCCCCeEEeee
Q 022303          263 SDQRVATLRST---DCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       263 ~~~~~~~~~~~---~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      .|+.-..+...   ..  .+.++.|.++++.+++|.
T Consensus       278 gG~tW~~~~~~~~~~~--~~~~v~~~~~~~~~~~G~  311 (327)
T 2xbg_A          278 GGQTWQQDVDVKKVPS--NFYKILFFSPDQGFILGQ  311 (327)
T ss_dssp             TTSSCEECGGGTTSSS--CCCEEEEEETTEEEEECS
T ss_pred             CCcccEEcCccCCCCC--CeEEEEEECCCceEEEcC
Confidence            56555544422   22  678888877777666654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.67  E-value=0.029  Score=45.87  Aligned_cols=108  Identities=6%  Similarity=0.008  Sum_probs=70.3

Q ss_pred             CEEEEEeCCCcEEEEecCCceeEEEecCC--CceeEEEE--ec-CCCEEEE--EcCCeEEEEecCCceeeeeccCCccce
Q 022303          123 GLILTGVGDKVMRLWSLEGYKCVEEYSLP--NAASLVDF--DF-DESKIVG--LIGTRICIWRRNGLRSVFPSREGTFMK  195 (299)
Q Consensus       123 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~--~~-~~~~l~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~  195 (299)
                      +.++.++.||.|.-.|.++|+...+++..  .+.+...-  .+ ++..+++  +.||.++.++..++...+.........
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            48999999999999999999999988765  22222110  01 2233443  689999999988775332211111000


Q ss_pred             e--eeec-----------cCCCeEEEecCCCcEEEEEcCCcceeeecc
Q 022303          196 G--LCMR-----------YFDPEAVVGCEDGTARVFDMYSRKCSQIIR  230 (299)
Q Consensus       196 ~--~~~~-----------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  230 (299)
                      .  +...           ..+..+++|+.++.+...|+++|+.+.++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            0  0000           034557899999999999999999888775

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.66  E-value=0.64  Score=37.23  Aligned_cols=160  Identities=9%  Similarity=0.034  Sum_probs=75.5

Q ss_pred             EEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcC--------CeEEEEecCCce-eeeeccCCccceeeeeccC
Q 022303          134 MRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIG--------TRICIWRRNGLR-SVFPSREGTFMKGLCMRYF  202 (299)
Q Consensus       134 i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d--------~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~  202 (299)
                      +.+||..+.+....-..+..... ....-+++.++ |+.+        ..+.+||+.+.. ..............+....
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~  148 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHM  148 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET
T ss_pred             eEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEEC
Confidence            77888888765432222222221 12222455544 4421        368999998764 1111111111111122344


Q ss_pred             CCeEEEecC-C-----CcEEEEEcCCcc--eeeeccccCCceeEEEeCCCCeEEEEeCCC-----cEEEEeCCCCceEEE
Q 022303          203 DPEAVVGCE-D-----GTARVFDMYSRK--CSQIIRMHCAPVTSLSLSEDQLIISGSSLG-----SIAISGLSSDQRVAT  269 (299)
Q Consensus       203 ~~~l~s~~~-d-----~~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~  269 (299)
                      +..++.|+. +     ..+.+||+.+.+  .+..+..... -.+++...+++++.|+.++     .+.+||+.+.+-...
T Consensus       149 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~  227 (315)
T 4asc_A          149 DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS-LFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF  227 (315)
T ss_dssp             TEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCB-SCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEE
T ss_pred             CEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchh-ceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEEC
Confidence            444566665 2     458899987653  2222211111 1223333456777777654     488899987643222


Q ss_pred             eeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          270 LRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       270 ~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      -...........+.+  ++++++.|+.
T Consensus       228 ~~~p~~r~~~~~~~~--~~~l~v~GG~  252 (315)
T 4asc_A          228 EAFPQERSSLSLVSL--VGTLYAIGGF  252 (315)
T ss_dssp             CCCSSCCBSCEEEEE--TTEEEEEEEE
T ss_pred             CCCCCcccceeEEEE--CCEEEEECCc
Confidence            111111101122222  6677777764

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=95.64  E-value=0.0091  Score=47.54  Aligned_cols=52  Identities=19%  Similarity=0.383  Sum_probs=47.5

Q ss_pred             cchhccCcHHHHHHHhhccCccchh-hHHHhhhhHHHHhhhhhHHHHHHhhhc
Q 022303           21 RATIESLNGDIICMIFSSLGFFDLV-RCSAVCKSWNAIINRCKLLQLLYCKLH   72 (299)
Q Consensus        21 ~~~~~~~~~~~~~~i~~~~~h~~~v-~~~~~~~~~~~l~~~~~~w~~~~~~~~   72 (299)
                      ...+..||.|++..|+.+++..+++ +|..+|+.|+.|+.+..+|+..+.+..
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g  100 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEG  100 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTT
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccC
Confidence            3477889999999999999999999 999999999999999999999887763

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.59  E-value=0.66  Score=36.85  Aligned_cols=143  Identities=12%  Similarity=0.037  Sum_probs=71.7

Q ss_pred             cCCEEEEEeCCC-----cEEEEecCCceeEEEecCCCcee--EEEEecCCCEEE-EEc-------CCeEEEEecCCcee-
Q 022303          121 KRGLILTGVGDK-----VMRLWSLEGYKCVEEYSLPNAAS--LVDFDFDESKIV-GLI-------GTRICIWRRNGLRS-  184 (299)
Q Consensus       121 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~-~~~-------d~~i~v~d~~~~~~-  184 (299)
                      .+.+++.|+.++     .+.+||..+.+....-..+....  .++. .++++++ |+.       -..+.+||+.+..- 
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~  186 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWT  186 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence            333555565543     57788888776544322222221  2222 3555544 433       23588999987751 


Q ss_pred             eeeccCCccceeeeeccCCCeEEEecCC-----CcEEEEEcCCcce--eeeccccCCceeEEEeCCCCeEEEEeCCC---
Q 022303          185 VFPSREGTFMKGLCMRYFDPEAVVGCED-----GTARVFDMYSRKC--SQIIRMHCAPVTSLSLSEDQLIISGSSLG---  254 (299)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~l~~~~~dg---  254 (299)
                      .............+...++..++.|+.+     ..+.+||+.+.+=  +..+..... -.+++...+++++.|+.++   
T Consensus       187 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~-~~~~~~~~~~i~v~GG~~~~~~  265 (302)
T 2xn4_A          187 YIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR-NAGVCAVNGLLYVVGGDDGSCN  265 (302)
T ss_dssp             EECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECCBCSSSB
T ss_pred             ECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc-cCeEEEECCEEEEECCcCCCcc
Confidence            1111111111111223344446666654     3688999886532  222211111 1223333446777777653   


Q ss_pred             --cEEEEeCCCCc
Q 022303          255 --SIAISGLSSDQ  265 (299)
Q Consensus       255 --~i~iwd~~~~~  265 (299)
                        .+.+||+.+.+
T Consensus       266 ~~~v~~yd~~~~~  278 (302)
T 2xn4_A          266 LASVEYYNPTTDK  278 (302)
T ss_dssp             CCCEEEEETTTTE
T ss_pred             cccEEEEcCCCCe
Confidence              48899987764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.54  E-value=1  Score=38.78  Aligned_cols=144  Identities=10%  Similarity=0.071  Sum_probs=84.9

Q ss_pred             eEEEe-c-CC-EEEEE-eCCCcEEEEecCCceeEEEecCCC----ceeEEEE-------ecCCCEEE-EEcCC-------
Q 022303          116 DQCRM-K-RG-LILTG-VGDKVMRLWSLEGYKCVEEYSLPN----AASLVDF-------DFDESKIV-GLIGT-------  172 (299)
Q Consensus       116 ~~~~~-~-~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~-------~~~~~~l~-~~~d~-------  172 (299)
                      ..+++ | ++ .|+.+ ...+.|++.|.+++..........    ....++|       +++++.|+ +...+       
T Consensus       142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~  221 (496)
T 3kya_A          142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP  221 (496)
T ss_dssp             EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred             CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence            45677 3 23 44444 444678889988877665544321    3455999       99998665 54433       


Q ss_pred             eEEEEecCC-cee-------eeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcC-------Ccce-----------
Q 022303          173 RICIWRRNG-LRS-------VFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMY-------SRKC-----------  225 (299)
Q Consensus       173 ~i~v~d~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~-------~~~~-----------  225 (299)
                      .|.+++... +..       .+.... + ...+++++.+.. +++-..++.|..+|+.       ++..           
T Consensus       222 ~V~~i~r~~~G~~~~~~~~~~v~~~~-~-p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          222 SVYIIKRNADGTFDDRSDIQLIAAYK-Q-CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEECCTTSCCSTTSCEEEEEEES-C-CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             eEEEEecCCCCceeecccceeeccCC-C-ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence            366776433 111       111111 1 123577786555 4456677889999987       4443           


Q ss_pred             eee-cc-ccCCceeEEEeCCC-Ce-EEEEeCCCcEEEEeC
Q 022303          226 SQI-IR-MHCAPVTSLSLSED-QL-IISGSSLGSIAISGL  261 (299)
Q Consensus       226 ~~~-~~-~~~~~i~~~~~~~~-~~-l~~~~~dg~i~iwd~  261 (299)
                      ... +. ........|+++|+ ++ +++=+....|+.++.
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence            111 11 22345679999999 74 555566788888664

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.30  E-value=1.7  Score=39.69  Aligned_cols=174  Identities=13%  Similarity=0.071  Sum_probs=93.9

Q ss_pred             cCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEec-CCCceeEEEEecCCCEEEEEcCCeEEEEecCCceee-eecc
Q 022303          113 VGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSV-FPSR  189 (299)
Q Consensus       113 ~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~-~~~~  189 (299)
                      ..|.++.. .++.|..|+.+| +..+|..+.+...... ....+..+.. .++.+.+++.+ .+..||..+.... +...
T Consensus        63 ~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~  139 (758)
T 3ott_A           63 TRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGDTLWLGALN-GLYTYQLQSRKLTSFDTR  139 (758)
T ss_dssp             SCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETTEEEEEETT-EEEEEETTTCCEEEECHH
T ss_pred             ceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCCcEEEEcCC-cceeEeCCCCeEEEeccC
Confidence            45777766 556777777765 6789988765432111 1112333433 45544446665 7888998765422 2110


Q ss_pred             --CCccceeeeeccC-CCeEEEecCCCcEEEEEcCCcceeee-ccc----cCCceeEEEeCCC-CeEEEEeCCCcEEEEe
Q 022303          190 --EGTFMKGLCMRYF-DPEAVVGCEDGTARVFDMYSRKCSQI-IRM----HCAPVTSLSLSED-QLIISGSSLGSIAISG  260 (299)
Q Consensus       190 --~~~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~----~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd  260 (299)
                        .-....+.++..+ ...+..|..+ -+..+|..+++.... ...    ....|.++...++ ..|..|+. +-|..+|
T Consensus       140 ~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~  217 (758)
T 3ott_A          140 RNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYF  217 (758)
T ss_dssp             HHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEE
T ss_pred             CCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEc
Confidence              0011123344333 3335556554 477888776543221 111    1234788877765 54455554 4588899


Q ss_pred             CCCCceEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022303          261 LSSDQRVATLRSTDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      ..+++..........  .|.++...++|.+.+.
T Consensus       218 ~~~~~~~~~~~l~~~--~i~~i~~d~~g~lWig  248 (758)
T 3ott_A          218 PSTGQIKQTEAFHNN--SIKSLALDGNGDLLAG  248 (758)
T ss_dssp             TTTTEEEEEEEEEEE--EEEEEEECTTCCEEEE
T ss_pred             CCCCeEEeccCCCCC--eEEEEEEcCCCCEEEE
Confidence            876653221111222  6888888888876654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.23  E-value=1.1  Score=43.13  Aligned_cols=154  Identities=10%  Similarity=0.133  Sum_probs=86.6

Q ss_pred             CcEEEEecCCceeEEEecCCCce--eEEE---EecC-CCEEE-EE----------cCCeEEEEecCCceeee---eccCC
Q 022303          132 KVMRLWSLEGYKCVEEYSLPNAA--SLVD---FDFD-ESKIV-GL----------IGTRICIWRRNGLRSVF---PSREG  191 (299)
Q Consensus       132 g~i~iwd~~~~~~~~~~~~~~~~--~~~~---~~~~-~~~l~-~~----------~d~~i~v~d~~~~~~~~---~~~~~  191 (299)
                      +.|++.|..+.+.+..++.....  .+++   |..+ ..+++ |+          ..|.|++|++.+.+..+   +...+
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g  886 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG  886 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence            46889999888888777755433  3333   2222 35666 65          34789999987543211   12233


Q ss_pred             ccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCcee--EEEeCCCCeEEEEeCCCcEEEEeC--CCCceE
Q 022303          192 TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVT--SLSLSEDQLIISGSSLGSIAISGL--SSDQRV  267 (299)
Q Consensus       192 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~--~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~  267 (299)
                      .   +.++...+.++++|- ..++++|++...+.+..-..+-..|.  .+.. -++++++|..-..+.+...  ..++ +
T Consensus       887 ~---v~al~~~~g~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~~~~~-L  960 (1158)
T 3ei3_A          887 A---VYSMVEFNGKLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKT-KGDFILVGDLMRSVLLLAYKPMEGN-F  960 (1158)
T ss_dssp             C---EEEEEEETTEEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEE-ETTEEEEEESSBCEEEEEEETTTTE-E
T ss_pred             c---CEEEeeeCCEEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEec-cCCEEEEEEhhheEEEEEEEcCCCe-E
Confidence            3   446666666766554 57899999986554431111111132  3333 2368888888777777543  3333 3


Q ss_pred             EEeeccCCCCcEEEEEccCCCCeE
Q 022303          268 ATLRSTDCTGHIICLMYPQFLHML  291 (299)
Q Consensus       268 ~~~~~~~~~~~i~~~~~s~~g~~l  291 (299)
                      ..+..+.....++++.|-.++.++
T Consensus       961 ~~~a~D~~~~~vta~~~ld~~t~l  984 (1158)
T 3ei3_A          961 EEIARDFNPNWMSAVEILDDDNFL  984 (1158)
T ss_dssp             EEEEECCSCBCEEEEEEEETTEEE
T ss_pred             EEEEeecccccEEEEEEEccCcEE
Confidence            333333322267777776554443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.11  E-value=1.1  Score=36.72  Aligned_cols=160  Identities=6%  Similarity=-0.061  Sum_probs=83.8

Q ss_pred             CCCcEEEEecCC--ceeEE-EecC--CC----ceeEEEEec--CCC-EEE-EEc---CCeEEEEecCCc--e-eeeeccC
Q 022303          130 GDKVMRLWSLEG--YKCVE-EYSL--PN----AASLVDFDF--DES-KIV-GLI---GTRICIWRRNGL--R-SVFPSRE  190 (299)
Q Consensus       130 ~dg~i~iwd~~~--~~~~~-~~~~--~~----~~~~~~~~~--~~~-~l~-~~~---d~~i~v~d~~~~--~-~~~~~~~  190 (299)
                      .+|.|.++|.++  ++... .+..  ..    ...-+.+.+  ++. +|+ +..   +.+|.+|++...  . .......
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            789999999873  23211 2222  11    222266655  454 233 322   457777776543  2 1111111


Q ss_pred             C---ccceeeeeccCCCeEEEec-----------------CCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEE
Q 022303          191 G---TFMKGLCMRYFDPEAVVGC-----------------EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIIS  249 (299)
Q Consensus       191 ~---~~~~~~~~~~~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~  249 (299)
                      +   ....-+.+.+++...++..                 ..|.+..+|.  ++. ..+...-...+.++|+|| +.+..
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~~lYv  237 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGKYVYI  237 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSSEEEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCCEEEE
Confidence            1   1111234555555444432                 1244555554  332 222233345789999999 65554


Q ss_pred             E-eCCCcEEEEeCCC-Cce--EEEeeccCCCCcEEEEEccC-CCCeEEeee
Q 022303          250 G-SSLGSIAISGLSS-DQR--VATLRSTDCTGHIICLMYPQ-FLHMLFFLC  295 (299)
Q Consensus       250 ~-~~dg~i~iwd~~~-~~~--~~~~~~~~~~~~i~~~~~s~-~g~~l~s~s  295 (299)
                      + +..+.|..|++.. ++.  .+.+. ...  ..-.+++++ +|.+.+++.
T Consensus       238 adt~~~~I~~~~~~~~g~l~~~~~~~-~~g--~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          238 AELLAHKIHVYEKHANWTLTPLRVLS-FDT--LVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEEE-CSS--EEEEEEECTTTCCEEEEEE
T ss_pred             EeCCCCeEEEEEECCCCcEecCEEEe-CCC--CCceEEEeCCCCcEEEEec
Confidence            4 5678999999863 332  22332 223  688999999 598877664

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.03  E-value=1.1  Score=35.97  Aligned_cols=130  Identities=8%  Similarity=0.028  Sum_probs=63.6

Q ss_pred             EEEEecCCceeEEEecCCCce--eEEEEecCCCEEE-EEcC-------CeEEEEecCCcee-eeeccCCccceeeeeccC
Q 022303          134 MRLWSLEGYKCVEEYSLPNAA--SLVDFDFDESKIV-GLIG-------TRICIWRRNGLRS-VFPSREGTFMKGLCMRYF  202 (299)
Q Consensus       134 i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~-~~~d-------~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~  202 (299)
                      +.++|..+.+....-..+...  ..++. .++++++ |+.+       ..+.+||+.+..- .............+....
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~  158 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHN  158 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEET
T ss_pred             EEEEeCCCCcEEECCCCCccccccceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEEC
Confidence            778888877654432222211  12222 2555555 5543       3688899887652 111111111111122234


Q ss_pred             CCeEEEecC------CCcEEEEEcCCcc--eeeeccccCCceeEEEeCCCCeEEEEeCC-----CcEEEEeCCCCc
Q 022303          203 DPEAVVGCE------DGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSEDQLIISGSSL-----GSIAISGLSSDQ  265 (299)
Q Consensus       203 ~~~l~s~~~------d~~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~  265 (299)
                      +..++.|+.      -..+.+||+.+.+  .+..+..... -.+++...+++++.|+.+     ..+.+||+.+.+
T Consensus       159 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          159 GMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRS-MFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             TEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             CEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcc-cceEEEECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            444556653      2358899988653  2222211111 123333345667777643     347789987764

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.99  E-value=1.4  Score=37.20  Aligned_cols=51  Identities=14%  Similarity=0.114  Sum_probs=39.6

Q ss_pred             CCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEcc
Q 022303          233 CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYP  285 (299)
Q Consensus       233 ~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  285 (299)
                      .+...++..++. ..+..-+.-|.|++||+.++.++..-+...+  +|..-+.+
T Consensus       258 ~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~  309 (494)
T 1bpo_A          258 NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPH  309 (494)
T ss_dssp             TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEE
T ss_pred             cCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC--ceEEeccc
Confidence            455677888887 8888889999999999999999887776665  55544443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.90  E-value=1.5  Score=36.92  Aligned_cols=135  Identities=8%  Similarity=-0.051  Sum_probs=85.4

Q ss_pred             EEEecCCCEEEEEcCCeEEEEecCCce--eeeecc---CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcce------
Q 022303          157 VDFDFDESKIVGLIGTRICIWRRNGLR--SVFPSR---EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC------  225 (299)
Q Consensus       157 ~~~~~~~~~l~~~~d~~i~v~d~~~~~--~~~~~~---~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------  225 (299)
                      .....++..++...++.|+.-++....  +.+...   .......+.+++++..|+..+ +..|.|..+..+..      
T Consensus        26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~  104 (452)
T 3pbp_A           26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVS  104 (452)
T ss_dssp             EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred             EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccc
Confidence            344567777777777888888877332  222222   111122367889999887765 45788888873221      


Q ss_pred             ------eeeccc------cCCceeEEEeCCC----CeEEEEeCCCcEEEEeCCCC--ceEEEeeccC-------CCCcEE
Q 022303          226 ------SQIIRM------HCAPVTSLSLSED----QLIISGSSLGSIAISGLSSD--QRVATLRSTD-------CTGHII  280 (299)
Q Consensus       226 ------~~~~~~------~~~~i~~~~~~~~----~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~-------~~~~i~  280 (299)
                            ...+..      ...+|..+.|+|-    ..|++-..|+.|++||+...  ++. .+....       ....|.
T Consensus       105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~  183 (452)
T 3pbp_A          105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT  183 (452)
T ss_dssp             HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred             cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence                  112221      2467999999984    58999999999999999752  222 222111       002789


Q ss_pred             EEEccCCCCeEEe
Q 022303          281 CLMYPQFLHMLFF  293 (299)
Q Consensus       281 ~~~~s~~g~~l~s  293 (299)
                      +++|.++|-.|..
T Consensus       184 S~~Fg~~~lTLYv  196 (452)
T 3pbp_A          184 DLEFSKDGLTLYC  196 (452)
T ss_dssp             EEEECTTSSCEEE
T ss_pred             EEEEcCCCcEEEE
Confidence            9999998765555

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.83  E-value=1.4  Score=36.21  Aligned_cols=135  Identities=10%  Similarity=-0.044  Sum_probs=65.4

Q ss_pred             ceeEEEEecCCCEEEEEcCCeEEEEecCCceeeeec-----cCCccceeeeeccC---CCeEEEecC----C----CcEE
Q 022303          153 AASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS-----REGTFMKGLCMRYF---DPEAVVGCE----D----GTAR  216 (299)
Q Consensus       153 ~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~l~s~~~----d----~~i~  216 (299)
                      ....++|.|+++++++..++.|++++.... ..+..     ........+++.++   +..|+....    +    +.|.
T Consensus        30 ~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~  108 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI  108 (354)
T ss_dssp             CEEEEEEEETTEEEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred             CCeEEEEcCCCeEEEEeCCCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence            445577777777666666677777763322 11110     00011223456655   344443322    2    4566


Q ss_pred             EEEcCCc-------cee-eecc-ccCCceeEEEeCCC-CeEEEEeC-------------CCcEEEEeCCCCc--------
Q 022303          217 VFDMYSR-------KCS-QIIR-MHCAPVTSLSLSED-QLIISGSS-------------LGSIAISGLSSDQ--------  265 (299)
Q Consensus       217 iwd~~~~-------~~~-~~~~-~~~~~i~~~~~~~~-~~l~~~~~-------------dg~i~iwd~~~~~--------  265 (299)
                      .|+....       +.+ ..+. ........|+|.|+ .++++.+.             .|.|.-++.. ++        
T Consensus       109 r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~npf~  187 (354)
T 3a9g_A          109 RGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNPFP  187 (354)
T ss_dssp             EEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSSST
T ss_pred             EEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCCCC
Confidence            6665432       111 1121 11123467899999 66555432             2445555543 22        


Q ss_pred             --eEEEeeccCCCCcEEEEEccC-CCCeEEe
Q 022303          266 --RVATLRSTDCTGHIICLMYPQ-FLHMLFF  293 (299)
Q Consensus       266 --~~~~~~~~~~~~~i~~~~~s~-~g~~l~s  293 (299)
                        .+.. .++.   ....++|+| +|+++++
T Consensus       188 ~~~i~a-~G~r---np~Gla~d~~~g~l~v~  214 (354)
T 3a9g_A          188 NSPIWS-YGHR---NPQGIDWHRASGVMVAT  214 (354)
T ss_dssp             TCCEEE-ECCS---CCCEEEECTTTCCEEEE
T ss_pred             CCcEEE-EccC---CcceEEEeCCCCCEEEE
Confidence              1111 1232   467899999 6665553

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.76  E-value=3.2  Score=40.05  Aligned_cols=136  Identities=10%  Similarity=0.109  Sum_probs=84.1

Q ss_pred             EEEEEe----------CCCcEEEEecCCcee--EEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCceeee-ec-c
Q 022303          124 LILTGV----------GDKVMRLWSLEGYKC--VEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVF-PS-R  189 (299)
Q Consensus       124 ~l~s~~----------~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~-~~-~  189 (299)
                      +++.|.          ..|.|.++++..++.  +...+....+.+++-- +| +|+++.+..+++|++...+... .. .
T Consensus       846 ~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~~~~~~  923 (1158)
T 3ei3_A          846 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELRTECNH  923 (1158)
T ss_dssp             EEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEEEEEEE
T ss_pred             EEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEEEEeec
Confidence            788776          357899999875443  3334445555564322 34 6666677999999998654221 11 0


Q ss_pred             CCccceeeeeccCCCeEEEecCCCcEEEEEc--CCcceeeecc--ccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 022303          190 EGTFMKGLCMRYFDPEAVVGCEDGTARVFDM--YSRKCSQIIR--MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSS  263 (299)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~  263 (299)
                      -.... ...+...++.++.|+.-..+.++..  ..++. ..+.  .....++++.+-.+..++.+..+|.|.+.....
T Consensus       924 ~~~i~-~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L-~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          924 YNNIM-ALYLKTKGDFILVGDLMRSVLLLAYKPMEGNF-EEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             CCCSC-EEEEEEETTEEEEEESSBCEEEEEEETTTTEE-EEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred             cccEE-EEEEeccCCEEEEEEhhheEEEEEEEcCCCeE-EEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence            11111 2244455778888887777776543  33332 2222  345678888887666788899999999987643

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.75  E-value=1.3  Score=35.72  Aligned_cols=179  Identities=11%  Similarity=0.002  Sum_probs=89.3

Q ss_pred             cCeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecC----CCceeEEEEecCCCEEEEEcCCeEEEE-ecCCc-eeee
Q 022303          113 VGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSL----PNAASLVDFDFDESKIVGLIGTRICIW-RRNGL-RSVF  186 (299)
Q Consensus       113 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~d~~i~v~-d~~~~-~~~~  186 (299)
                      ..+..+.+.++.++.++.++.|.. ..+.|+.-.....    +.....+.+.+++..++++.++.|+.- |-... +...
T Consensus        80 ~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~  158 (327)
T 2xbg_A           80 YRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALV  158 (327)
T ss_dssp             CEEEEEEEETTEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEE
T ss_pred             ccEEEEEecCCeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEee
Confidence            357778775564444455665443 2333433222221    223445666666666666666654332 21111 1221


Q ss_pred             eccCCccceeeeeccCCCeEEEecCCCcEEEEEc--CCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCC
Q 022303          187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDM--YSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSD  264 (299)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~  264 (299)
                      ....... ..+.+.+.+..++.+...+..+-.|-  .+.+.+..  .....+..+.+.++..+..++.+|.+++.+...+
T Consensus       159 ~~~~~~~-~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~--~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G  235 (327)
T 2xbg_A          159 QEAIGVM-RNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNR--TTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS  235 (327)
T ss_dssp             CSCCCCE-EEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEEC--CSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE
T ss_pred             cCCCcce-EEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCC--CCCCccceeEECCCCCEEEEeCCceEEEecCCCC
Confidence            1222222 23455565555555544333333342  23333321  3345688898888833445566788877653334


Q ss_pred             ceEEEeecc--CCCCcEEEEEccCCCCeEEeee
Q 022303          265 QRVATLRST--DCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       265 ~~~~~~~~~--~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      +....+...  .....+.++++.+++..++++.
T Consensus       236 ~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~  268 (327)
T 2xbg_A          236 ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG  268 (327)
T ss_dssp             EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES
T ss_pred             CeeEeccCCcccCCcceEEEEecCCCEEEEEeC
Confidence            443333322  1111588999998888777654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=94.65  E-value=1.2  Score=34.69  Aligned_cols=140  Identities=9%  Similarity=-0.017  Sum_probs=76.5

Q ss_pred             ceeE-EEEecCCCEEE--EEcCCeEEEEecCCce-eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcce---
Q 022303          153 AASL-VDFDFDESKIV--GLIGTRICIWRRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC---  225 (299)
Q Consensus       153 ~~~~-~~~~~~~~~l~--~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---  225 (299)
                      ...+ ++++|++..|+  ...++.|...|..... ..+......-...+++...+.++++.-.++.+.++++.....   
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~  106 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKI  106 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeee
Confidence            3455 99999877665  5556788888987332 111111111222345555565555555667888888765432   


Q ss_pred             eeecc------ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC---CCceEEEeec-----cCCCCcEEEEEccCCCCe
Q 022303          226 SQIIR------MHCAPVTSLSLSED-QLIISGSSLGSIAISGLS---SDQRVATLRS-----TDCTGHIICLMYPQFLHM  290 (299)
Q Consensus       226 ~~~~~------~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~---~~~~~~~~~~-----~~~~~~i~~~~~s~~g~~  290 (299)
                      +....      ..+...-.++++|. +.|.++.+.....+|.+.   ....+..+..     ......+.+++++|....
T Consensus       107 ~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~  186 (255)
T 3qqz_A          107 LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNT  186 (255)
T ss_dssp             EEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTE
T ss_pred             eeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCe
Confidence            12221      12344689999998 666666665555555543   1112222211     111115678889885444


Q ss_pred             EE
Q 022303          291 LF  292 (299)
Q Consensus       291 l~  292 (299)
                      |.
T Consensus       187 ll  188 (255)
T 3qqz_A          187 LL  188 (255)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.56  E-value=0.84  Score=36.53  Aligned_cols=133  Identities=12%  Similarity=0.031  Sum_probs=66.5

Q ss_pred             CcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEc-C-----CeEEEEecCCce-eeeeccCCccceeeeeccC
Q 022303          132 KVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLI-G-----TRICIWRRNGLR-SVFPSREGTFMKGLCMRYF  202 (299)
Q Consensus       132 g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~-d-----~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~  202 (299)
                      ..+.+||..+.+....-..+..... .+...++++++ |+. +     ..+.+||+.+.. ..............+...+
T Consensus       117 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~  196 (315)
T 4asc_A          117 DSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHD  196 (315)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET
T ss_pred             ceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEEC
Confidence            4588899988765432222222221 22234555555 544 2     378999998775 1111111111111123334


Q ss_pred             CCeEEEecCCC-----cEEEEEcCCcc--eeeeccccCCceeEEEeCCCCeEEEEeCC--------------CcEEEEeC
Q 022303          203 DPEAVVGCEDG-----TARVFDMYSRK--CSQIIRMHCAPVTSLSLSEDQLIISGSSL--------------GSIAISGL  261 (299)
Q Consensus       203 ~~~l~s~~~d~-----~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~d--------------g~i~iwd~  261 (299)
                      +..++.|+.++     .+.+||+.+.+  .+..+..... -.+++...+++++.|+.+              ..+.+||+
T Consensus       197 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~  275 (315)
T 4asc_A          197 GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERS-SLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNE  275 (315)
T ss_dssp             TEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET
T ss_pred             CEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccc-ceeEEEECCEEEEECCccccCcCCccccccccCcEEEecC
Confidence            44566666544     47888987653  2222211111 122333345667777653              24678888


Q ss_pred             CCCc
Q 022303          262 SSDQ  265 (299)
Q Consensus       262 ~~~~  265 (299)
                      .+.+
T Consensus       276 ~~~~  279 (315)
T 4asc_A          276 EEKK  279 (315)
T ss_dssp             TTTE
T ss_pred             CCCh
Confidence            7764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.53  E-value=1.1  Score=36.44  Aligned_cols=121  Identities=11%  Similarity=-0.061  Sum_probs=53.2

Q ss_pred             CeEEEEecCCcee-eeec-cCCccceeeeeccCCCeEEEecC------CCcEEEEEc--CCc--ceeeeccccCCc-eeE
Q 022303          172 TRICIWRRNGLRS-VFPS-REGTFMKGLCMRYFDPEAVVGCE------DGTARVFDM--YSR--KCSQIIRMHCAP-VTS  238 (299)
Q Consensus       172 ~~i~v~d~~~~~~-~~~~-~~~~~~~~~~~~~~~~~l~s~~~------d~~i~iwd~--~~~--~~~~~~~~~~~~-i~~  238 (299)
                      ..+.+||+.+..- .... .........+....+..++.|+.      ...+..||+  .+.  +.+..+...... -.+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~  247 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF  247 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence            5799999987751 1111 11111101122223444555553      345777876  322  222222111111 122


Q ss_pred             EEeCCCCeEEEEeCC----------------------CcEEEEeCCCCce--EEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          239 LSLSEDQLIISGSSL----------------------GSIAISGLSSDQR--VATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       239 ~~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      ++...+++++.|+.+                      ..+.+||+.+.+-  +..+.....  .-.+  ...++++++.|
T Consensus       248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~~~--~~~~~~i~v~G  323 (357)
T 2uvk_A          248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA--YGVS--LPWNNSLLIIG  323 (357)
T ss_dssp             EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB--SSEE--EEETTEEEEEE
T ss_pred             EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc--ccee--EEeCCEEEEEe
Confidence            333345677777632                      2578899886542  222222211  1122  22477787777


Q ss_pred             ec
Q 022303          295 CF  296 (299)
Q Consensus       295 s~  296 (299)
                      +.
T Consensus       324 G~  325 (357)
T 2uvk_A          324 GE  325 (357)
T ss_dssp             EE
T ss_pred             ee
Confidence            74

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.24  E-value=1.5  Score=34.86  Aligned_cols=140  Identities=7%  Similarity=-0.002  Sum_probs=69.7

Q ss_pred             EEEEEeCC-----CcEEEEecCCceeEEEecCCCcee--EEEEecCCCEEE-EEcC-----CeEEEEecCCceee-eecc
Q 022303          124 LILTGVGD-----KVMRLWSLEGYKCVEEYSLPNAAS--LVDFDFDESKIV-GLIG-----TRICIWRRNGLRSV-FPSR  189 (299)
Q Consensus       124 ~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~-~~~d-----~~i~v~d~~~~~~~-~~~~  189 (299)
                      +++.|+.+     ..+.+||..+.+....-..+....  .++.. ++++++ |+.+     ..+.+||+.+..-. ....
T Consensus       124 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~  202 (308)
T 1zgk_A          124 IYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM  202 (308)
T ss_dssp             EEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC
T ss_pred             EEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC
Confidence            55555533     367888988776544322222211  22222 555555 5443     46899998876511 1111


Q ss_pred             CCccceeeeeccCCCeEEEecCC-----CcEEEEEcCCcce--eeeccccCCceeEEEeCCCCeEEEEeCC-----CcEE
Q 022303          190 EGTFMKGLCMRYFDPEAVVGCED-----GTARVFDMYSRKC--SQIIRMHCAPVTSLSLSEDQLIISGSSL-----GSIA  257 (299)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~l~~~~~d-----g~i~  257 (299)
                      ........+...++..++.|+.+     ..+.+||+.+.+=  +..+..... -.+++...+++++.|+.+     ..+.
T Consensus       203 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~v~  281 (308)
T 1zgk_A          203 NTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS-ALGITVHQGRIYVLGGYDGHTFLDSVE  281 (308)
T ss_dssp             SSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB-SCEEEEETTEEEEECCBCSSCBCCEEE
T ss_pred             CCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc-ceEEEEECCEEEEEcCcCCCcccceEE
Confidence            11111111222344446666654     4588999886532  222211111 122333345677777754     3577


Q ss_pred             EEeCCCCc
Q 022303          258 ISGLSSDQ  265 (299)
Q Consensus       258 iwd~~~~~  265 (299)
                      +||+.+.+
T Consensus       282 ~yd~~~~~  289 (308)
T 1zgk_A          282 CYDPDTDT  289 (308)
T ss_dssp             EEETTTTE
T ss_pred             EEcCCCCE
Confidence            88887654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.15  E-value=1.7  Score=34.82  Aligned_cols=145  Identities=12%  Similarity=-0.010  Sum_probs=71.2

Q ss_pred             cCCEEEEEeCC-------CcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEc------CCeEEEEecCCce-e
Q 022303          121 KRGLILTGVGD-------KVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLI------GTRICIWRRNGLR-S  184 (299)
Q Consensus       121 ~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~------d~~i~v~d~~~~~-~  184 (299)
                      .+.+++.|+.+       ..+.+||..+.+....-..+..... .+...++++++ |+.      -..+.+||+.+.. .
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~  188 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK  188 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence            33355555543       2578888887765543332322222 22224555555 433      2368999998875 1


Q ss_pred             eeeccCCccceeeeeccCCCeEEEecCC-----CcEEEEEcCCcc--eeeeccccCCceeEEEeCCCCeEEEEeCC----
Q 022303          185 VFPSREGTFMKGLCMRYFDPEAVVGCED-----GTARVFDMYSRK--CSQIIRMHCAPVTSLSLSEDQLIISGSSL----  253 (299)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~d----  253 (299)
                      .............+...++..++.|+.+     ..+.+||+.+.+  .+..+..... -.+++...+++++.|+.+    
T Consensus       189 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~  267 (318)
T 2woz_A          189 DLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERS-SISLVSLAGSLYAIGGFAMIQL  267 (318)
T ss_dssp             EECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCB-SCEEEEETTEEEEECCBCCBC-
T ss_pred             ECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCccc-ceEEEEECCEEEEECCeeccCC
Confidence            1111111111111222344445666543     346788887653  2222211111 123333345667777653    


Q ss_pred             ----------CcEEEEeCCCCce
Q 022303          254 ----------GSIAISGLSSDQR  266 (299)
Q Consensus       254 ----------g~i~iwd~~~~~~  266 (299)
                                ..+.+||+.+.+-
T Consensus       268 ~~~~~~~~~~~~v~~yd~~~~~W  290 (318)
T 2woz_A          268 ESKEFAPTEVNDIWKYEDDKKEW  290 (318)
T ss_dssp             ---CCBCCBCCCEEEEETTTTEE
T ss_pred             CCceeccceeeeEEEEeCCCCEe
Confidence                      3578889877653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.07  E-value=0.12  Score=42.14  Aligned_cols=109  Identities=11%  Similarity=0.117  Sum_probs=68.5

Q ss_pred             EEEEEcCCeEEEEecCCceeeeeccCCccceeeeec-c---CCCeEEEe--cCCCcEEEEEcCCcceeeeccc----cCC
Q 022303          165 KIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMR-Y---FDPEAVVG--CEDGTARVFDMYSRKCSQIIRM----HCA  234 (299)
Q Consensus       165 ~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~---~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~----~~~  234 (299)
                      .++++.||.|+-+|..+++.............+... +   .+..++.+  +.||.+..+|..+|.....+..    ...
T Consensus        13 V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~S   92 (339)
T 2be1_A           13 LIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTS   92 (339)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTC
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceecc
Confidence            444999999999999988766554333101111111 1   12234433  6899999999988865544431    112


Q ss_pred             ceeE---EEe------CCCCeEEEEeCCCcEEEEeCCCCceEEEeecc
Q 022303          235 PVTS---LSL------SEDQLIISGSSLGSIAISGLSSDQRVATLRST  273 (299)
Q Consensus       235 ~i~~---~~~------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  273 (299)
                      ++..   ..+      +.+..+++|+.+|.+...|+++|+.+.++...
T Consensus        93 P~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           93 PLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             SEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             ccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            2221   001      12367899999999999999999999988644

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.45  E-value=2.7  Score=34.39  Aligned_cols=29  Identities=17%  Similarity=0.287  Sum_probs=21.7

Q ss_pred             ceeEEEEecCCC-EEEEEcCCeEEEEecCC
Q 022303          153 AASLVDFDFDES-KIVGLIGTRICIWRRNG  181 (299)
Q Consensus       153 ~~~~~~~~~~~~-~l~~~~d~~i~v~d~~~  181 (299)
                      ....++|.|+++ ++++...|.|++++..+
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g   48 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGK   48 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTT
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCC
Confidence            456688888888 66677788888887543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.81  E-value=3.4  Score=33.87  Aligned_cols=79  Identities=8%  Similarity=0.025  Sum_probs=46.3

Q ss_pred             CCcEEEEEcCCcc-e---eeeccc-cCCceeEEEeCCC-CeEEEEeC-----------------CCcEEEEeCCCCceEE
Q 022303          212 DGTARVFDMYSRK-C---SQIIRM-HCAPVTSLSLSED-QLIISGSS-----------------LGSIAISGLSSDQRVA  268 (299)
Q Consensus       212 d~~i~iwd~~~~~-~---~~~~~~-~~~~i~~~~~~~~-~~l~~~~~-----------------dg~i~iwd~~~~~~~~  268 (299)
                      +..+.+|++.... .   +..+.+ .-...+.+.+.++ .++++...                 .|.|.-+|.  ++. .
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~  214 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-R  214 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-E
T ss_pred             CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-E
Confidence            4667787765432 1   223322 1235788988888 66666541                 245555555  332 2


Q ss_pred             EeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          269 TLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       269 ~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      .+...-.  ..+.++|+|||+.|..+.
T Consensus       215 ~~~~~l~--~pNGia~spDg~~lYvad  239 (355)
T 3sre_A          215 VVAEGFD--FANGINISPDGKYVYIAE  239 (355)
T ss_dssp             EEEEEES--SEEEEEECTTSSEEEEEE
T ss_pred             EeecCCc--ccCcceECCCCCEEEEEe
Confidence            2222222  679999999999887765

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=92.78  E-value=3.4  Score=33.77  Aligned_cols=140  Identities=11%  Similarity=0.100  Sum_probs=83.2

Q ss_pred             CCcEEEEec--CCceeEEEecC---C-----CceeEEEE--ecC-CC-EEE-EEcCCeEEEEecCC---c----eeeeec
Q 022303          131 DKVMRLWSL--EGYKCVEEYSL---P-----NAASLVDF--DFD-ES-KIV-GLIGTRICIWRRNG---L----RSVFPS  188 (299)
Q Consensus       131 dg~i~iwd~--~~~~~~~~~~~---~-----~~~~~~~~--~~~-~~-~l~-~~~d~~i~v~d~~~---~----~~~~~~  188 (299)
                      +.+|.+|++  .+++ +..+..   +     ..+.-+++  ++. +. +++ ...+|.+..|++..   +    +.+-..
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            578999976  3443 444421   1     22333666  664 44 344 77789999998832   2    111111


Q ss_pred             cCCccceeeeeccCCCeEEEecCCCcEEEEEcC-----Ccceeeecc-c-cCCceeEEEeC--CC-C-eEEEEe-CCCcE
Q 022303          189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY-----SRKCSQIIR-M-HCAPVTSLSLS--ED-Q-LIISGS-SLGSI  256 (299)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-----~~~~~~~~~-~-~~~~i~~~~~~--~~-~-~l~~~~-~dg~i  256 (299)
                      ..+.....+.+.+....|+.+-++..|..+|.+     +++.+..+. . -...+..|++.  ++ + +|++++ .+++.
T Consensus       177 ~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~  256 (355)
T 3amr_A          177 KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY  256 (355)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred             cCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence            112222234556667779999998777777755     234554442 1 12357778774  44 4 555555 67899


Q ss_pred             EEEeCC-CCceEEEee
Q 022303          257 AISGLS-SDQRVATLR  271 (299)
Q Consensus       257 ~iwd~~-~~~~~~~~~  271 (299)
                      .+||.+ +.+.+..+.
T Consensus       257 ~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          257 AIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEESSTTCCEEEEEE
T ss_pred             EEEECCCCCcEEEEEE
Confidence            999996 677777775

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.74  E-value=4.4  Score=36.64  Aligned_cols=173  Identities=11%  Similarity=0.037  Sum_probs=82.7

Q ss_pred             CC-EEEEEeCC------CcEEEEecCCceeEEEecCCCcee--EEEEecCCCEEE-EEcCC--eEEEEecCCceeeeec-
Q 022303          122 RG-LILTGVGD------KVMRLWSLEGYKCVEEYSLPNAAS--LVDFDFDESKIV-GLIGT--RICIWRRNGLRSVFPS-  188 (299)
Q Consensus       122 ~~-~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~-~~~d~--~i~v~d~~~~~~~~~~-  188 (299)
                      ++ +++.|+.+      ..+.+||..+.+....-..+.+..  .++...++++++ |+.++  .+.+||+.+..-.... 
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~  530 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP  530 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence            55 55556543      247788888765443322222222  233324666666 55544  7999999887521111 


Q ss_pred             ----cCCcccee-eeeccC-CCeEEEecC--C-----CcEEEEEcCCcc--------eeeecc-ccCCceeEEEeCCCCe
Q 022303          189 ----REGTFMKG-LCMRYF-DPEAVVGCE--D-----GTARVFDMYSRK--------CSQIIR-MHCAPVTSLSLSEDQL  246 (299)
Q Consensus       189 ----~~~~~~~~-~~~~~~-~~~l~s~~~--d-----~~i~iwd~~~~~--------~~~~~~-~~~~~i~~~~~~~~~~  246 (299)
                          ........ +.+... +..++.|+.  +     +.+.+||+.+.+        .+.... ........+.+..+++
T Consensus       531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~i  610 (695)
T 2zwa_A          531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKL  610 (695)
T ss_dssp             SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEE
T ss_pred             CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEE
Confidence                11111111 222333 334566654  2     358899988765        111111 1111122333332567


Q ss_pred             EEEEeC--------CCcEEEEeCCCCceEEEeeccCC-------CCcEEEEEccCCCCeEEeee
Q 022303          247 IISGSS--------LGSIAISGLSSDQRVATLRSTDC-------TGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       247 l~~~~~--------dg~i~iwd~~~~~~~~~~~~~~~-------~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ++.|+.        ...+.+||+.+++-. .+.....       ...-.++....+|++++.|+
T Consensus       611 yv~GG~~~~~~~~~~~~v~~yd~~t~~W~-~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GG  673 (695)
T 2zwa_A          611 LIVGGTSPSGLFDRTNSIISLDPLSETLT-SIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG  673 (695)
T ss_dssp             EEECCBCSSCCCCTTTSEEEEETTTTEEE-ECCCCHHHHHHSCCCCSSCEEECC---CEEEECC
T ss_pred             EEECCccCCCCCCCCCeEEEEECCCCeEE-EeeccccccCCCCccceeeeEEEeCCCEEEEEeC
Confidence            777774        346999999876533 2211110       00013344445667777766

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.70  E-value=3.5  Score=33.68  Aligned_cols=58  Identities=14%  Similarity=0.020  Sum_probs=36.6

Q ss_pred             ceeEEEeCCCCeEEEEeCCCcEEEEeCCCCce------EEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          235 PVTSLSLSEDQLIISGSSLGSIAISGLSSDQR------VATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       235 ~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      ....++|..+.++++.-..+.|...++.....      ...+.....  .+..+++.|||.++++.
T Consensus       269 ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~--rp~~v~~~pdG~lyv~~  332 (352)
T 2ism_A          269 PPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFG--RLREVQVGPDGALYVTT  332 (352)
T ss_dssp             CEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSC--CEEEEEECTTSCEEEEE
T ss_pred             CCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCC--CeeEEEECCCCcEEEEE
Confidence            45677775446666666677787777754321      122222223  79999999999876664

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=92.56  E-value=4.3  Score=34.37  Aligned_cols=120  Identities=11%  Similarity=0.001  Sum_probs=79.7

Q ss_pred             CeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEe
Q 022303          172 TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGS  251 (299)
Q Consensus       172 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~  251 (299)
                      .+|.+.|+.++.......-....  .-++|..+-++.-. ...+.++|+++.+.+..+.-.. .|.-=.|-.++.|+-.+
T Consensus        48 ~~vvIiDl~~~~~~~rrpi~Ads--AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lVT  123 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPISADS--AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT  123 (494)
T ss_dssp             CEEEEEETTSTTSCEEEECCCSE--EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEEC
T ss_pred             CeEEEEECCCCCcceecccccce--eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEEc
Confidence            37778888776544333322222  24677776655443 6889999999998888876544 45455555444555554


Q ss_pred             CCCcEEEEeCCC-CceEEEeeccCC--CCcEEEEEccCCCCeEEeeec
Q 022303          252 SLGSIAISGLSS-DQRVATLRSTDC--TGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       252 ~dg~i~iwd~~~-~~~~~~~~~~~~--~~~i~~~~~s~~g~~l~s~s~  296 (299)
                       +..|+-|++.. ..+++.+..|..  .+.|..-..++++++++..+.
T Consensus       124 -~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI  170 (494)
T 1bpo_A          124 -DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI  170 (494)
T ss_dssp             -SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEE
T ss_pred             -CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEee
Confidence             56699999964 356666665543  247888899999999987765

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.55  E-value=6  Score=36.02  Aligned_cols=174  Identities=12%  Similarity=0.076  Sum_probs=97.0

Q ss_pred             CeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEec-----CCCceeEEEEecCCCEEEEEcCCeEEEEecCCceee-ee
Q 022303          114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYS-----LPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSV-FP  187 (299)
Q Consensus       114 ~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~-~~  187 (299)
                      .|.++...++.|..++.+ -+..+|..+++......     ....+..+....++.+.+++.+ .+..++..+.... +.
T Consensus       104 ~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~  181 (758)
T 3ott_A          104 DVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIP  181 (758)
T ss_dssp             CEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEEEC
T ss_pred             eEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEEec
Confidence            466665566666667766 57788887665433211     1223444666777777777654 5778887765422 11


Q ss_pred             ccCC---ccceeeeecc--CCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022303          188 SREG---TFMKGLCMRY--FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLS  262 (299)
Q Consensus       188 ~~~~---~~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~  262 (299)
                      ....   ....+.++..  .+..|..|.. +-+..+|..+++...........|.++...++..|..|+.+ -|.+++..
T Consensus       182 ~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~  259 (758)
T 3ott_A          182 LPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTDN-GLYVYHND  259 (758)
T ss_dssp             CCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEETT-EEEEECCT
T ss_pred             CCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeCC-ceeEEecC
Confidence            1111   0111333333  3444555654 45888898766543221122345888887766445556654 58889987


Q ss_pred             CCceEEEeeccC------CCCcEEEEEccCCCCeEE
Q 022303          263 SDQRVATLRSTD------CTGHIICLMYPQFLHMLF  292 (299)
Q Consensus       263 ~~~~~~~~~~~~------~~~~i~~~~~s~~g~~l~  292 (299)
                      +++. ..+....      ....|.++..+.+|.+-+
T Consensus       260 ~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi  294 (758)
T 3ott_A          260 TTPL-QHIIHDSRNIQSLTNNIIWNIFADQEHNIWL  294 (758)
T ss_dssp             TSCC-EEECCCTTCTTSCSCSCEEEEEECTTCCEEE
T ss_pred             CCcE-EEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE
Confidence            6543 2232110      012689998888776544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.64  E-value=3.5  Score=31.33  Aligned_cols=166  Identities=7%  Similarity=-0.130  Sum_probs=84.4

Q ss_pred             EEEEEeCCCcEEEEecCCce------eEEEecC--CCceeEEEEecCCCEEEEEcCCeEEEEecCCce-eeeeccC----
Q 022303          124 LILTGVGDKVMRLWSLEGYK------CVEEYSL--PNAASLVDFDFDESKIVGLIGTRICIWRRNGLR-SVFPSRE----  190 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~------~~~~~~~--~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~-~~~~~~~----  190 (299)
                      +|+....| +++.=....+.      ....+-.  =.....++|+|++.+.+. .+|.++-.+..+.. ..+....    
T Consensus         6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG   83 (236)
T 1tl2_A            6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIG   83 (236)
T ss_dssp             CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEE
T ss_pred             EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEec
Confidence            56666666 55554443332      1111211  124446999998886557 88888877765421 1111100    


Q ss_pred             --Cc-cceeeeeccCCCeEEEecCCCcEEEEEcCCcceee------ec-cccCCceeEEEeCCCCeEEEEeCCCcEEEEe
Q 022303          191 --GT-FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ------II-RMHCAPVTSLSLSEDQLIISGSSLGSIAISG  260 (299)
Q Consensus       191 --~~-~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~------~~-~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd  260 (299)
                        +- .-..+.+.+++...++  .||.|.-++..+...-.      .+ ...-..+..|.+.|+..|.+.. |+.++-+.
T Consensus        84 ~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~  160 (236)
T 1tl2_A           84 NGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKAL  160 (236)
T ss_dssp             CSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEEC
T ss_pred             ccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecC
Confidence              10 0123455555555444  56999888765422111      00 1112457899999994344444 88765444


Q ss_pred             CCCCce-----EEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          261 LSSDQR-----VATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       261 ~~~~~~-----~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      ..++..     ..+.-+..+...-+.+.|.++|.+.++.
T Consensus       161 ~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          161 PPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             CCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred             CCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence            443221     1111121111144557788888776654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=91.45  E-value=6.3  Score=38.74  Aligned_cols=162  Identities=10%  Similarity=0.123  Sum_probs=91.7

Q ss_pred             cCeeEEEe-cCCEEEEEeCCCcEEEEecCC-ceeEEEecCC-----CceeEEEEecCCCEEE--EE------cCCeEEEE
Q 022303          113 VGVDQCRM-KRGLILTGVGDKVMRLWSLEG-YKCVEEYSLP-----NAASLVDFDFDESKIV--GL------IGTRICIW  177 (299)
Q Consensus       113 ~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~l~--~~------~d~~i~v~  177 (299)
                      .+|.-..| ++..|+-.+ +..|.-|++.. ..++..+..|     ..++....+++.++++  |-      ..|.+.+|
T Consensus       106 e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLy  184 (1630)
T 1xi4_A          106 DDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY  184 (1630)
T ss_pred             CCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeee
Confidence            45555556 444443333 35789999963 3444444432     3455577888888866  32      24788899


Q ss_pred             ecCCce-eeeeccCCcccee-eeeccCCCeEEE-e---cCCCcEEEEEcCCc---c------eeeecc---ccCCceeEE
Q 022303          178 RRNGLR-SVFPSREGTFMKG-LCMRYFDPEAVV-G---CEDGTARVFDMYSR---K------CSQIIR---MHCAPVTSL  239 (299)
Q Consensus       178 d~~~~~-~~~~~~~~~~~~~-~~~~~~~~~l~s-~---~~d~~i~iwd~~~~---~------~~~~~~---~~~~~i~~~  239 (299)
                      ..+... ..+.+|.+..... +.-.+....+++ +   ...++++|-++...   .      .+..+.   ...+...++
T Consensus       185 S~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~  264 (1630)
T 1xi4_A          185 SVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM  264 (1630)
T ss_pred             ecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEE
Confidence            887653 3334433322110 000111111221 1   12368888887542   1      111111   124556678


Q ss_pred             EeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCC
Q 022303          240 SLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDC  275 (299)
Q Consensus       240 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  275 (299)
                      ..++. ..+..-+.-|.|.++|+.++.++..-+....
T Consensus       265 ~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~  301 (1630)
T 1xi4_A          265 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE  301 (1630)
T ss_pred             EeccccCEEEEEecCceEEEEecccchhhhhccccCC
Confidence            88887 8888889999999999999988765554444

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.07  E-value=3.1  Score=36.40  Aligned_cols=100  Identities=7%  Similarity=-0.167  Sum_probs=67.3

Q ss_pred             eeeeccCCCeEE-EecCCCcEEEEEcCCc------ce-------eeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEe
Q 022303          196 GLCMRYFDPEAV-VGCEDGTARVFDMYSR------KC-------SQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG  260 (299)
Q Consensus       196 ~~~~~~~~~~l~-s~~~d~~i~iwd~~~~------~~-------~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd  260 (299)
                      .+.++|++.+++ +|--+.++.++|.+.-      +.       ..+... .-.....+|.++ .-..+---|..|.-|+
T Consensus       327 Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSqvvkWn  405 (638)
T 3sbq_A          327 GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQVVKWN  405 (638)
T ss_dssp             CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecceEEEEe
Confidence            457889999954 5556889999998742      11       222222 334677889887 5556666899999999


Q ss_pred             CCCC----------ceEEEeeccCCCCcEEEE-----EccCCCCeEEeeeccc
Q 022303          261 LSSD----------QRVATLRSTDCTGHIICL-----MYPQFLHMLFFLCFLP  298 (299)
Q Consensus       261 ~~~~----------~~~~~~~~~~~~~~i~~~-----~~s~~g~~l~s~s~~~  298 (299)
                      +...          ..+..+..|..  +-.-.     .-.|+|++|++..-++
T Consensus       406 i~~a~~~~~g~~~~~v~~k~dv~Yq--pGH~~~~~get~~~dGk~lv~lnK~s  456 (638)
T 3sbq_A          406 MEEAVRAYKGEKVNYIKQKLDVHYQ--PGHLHASLCETNEADGKWLVALSKFS  456 (638)
T ss_dssp             HHHHHHHHTTCCCCCEEEEEECSSC--EEEEEETTTTSTTCCSCEEEEEESCC
T ss_pred             ccHHHHHhcCccCCeeeeccccccC--CcccccCCCccCCCCccEEEEecccc
Confidence            8653          46677777764  22222     2468999999987653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=89.69  E-value=8.7  Score=32.66  Aligned_cols=31  Identities=13%  Similarity=-0.031  Sum_probs=21.9

Q ss_pred             CceeEEEEecCCCEEEEEcCC-eEEEEecCCc
Q 022303          152 NAASLVDFDFDESKIVGLIGT-RICIWRRNGL  182 (299)
Q Consensus       152 ~~~~~~~~~~~~~~l~~~~d~-~i~v~d~~~~  182 (299)
                      .....++|.|+++++++...+ .|++++..++
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g   58 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESG   58 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence            345668888888877777665 6888776433

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=87.64  E-value=9.9  Score=30.73  Aligned_cols=49  Identities=6%  Similarity=-0.047  Sum_probs=26.0

Q ss_pred             CcEEEEEcCCcc--eeeeccccCCceeEEEeCCCCeEEEEeC------CCcEEEEeC
Q 022303          213 GTARVFDMYSRK--CSQIIRMHCAPVTSLSLSEDQLIISGSS------LGSIAISGL  261 (299)
Q Consensus       213 ~~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~------dg~i~iwd~  261 (299)
                      ..+.+||+.+.+  .+..+......-.+++...+++++.|+.      ...+.+||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEe
Confidence            568899987643  3333321111113344445566677664      345777876

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=87.41  E-value=5  Score=35.13  Aligned_cols=119  Identities=12%  Similarity=0.017  Sum_probs=69.5

Q ss_pred             EEEEecCC----c-eeEEEecCCCceeEEEEecCCCEEE--EEcCCeEEEEecCCcee-------------eeeccCCcc
Q 022303          134 MRLWSLEG----Y-KCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRS-------------VFPSREGTF  193 (299)
Q Consensus       134 i~iwd~~~----~-~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~-------------~~~~~~~~~  193 (299)
                      +.+.|...    + ..+..+..+..+.-+.++|||++++  +-.+.++.++|++.-..             ..+...+-.
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlG  379 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLG  379 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSC
T ss_pred             eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCc
Confidence            55666554    2 2344455556666689999999988  44477999999985321             111112222


Q ss_pred             ceeeeeccCCCeEEEecCCCcEEEEEcCCc----------ceeeeccccCCceeEEE-----eCCC-CeEEEEeC
Q 022303          194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSR----------KCSQIIRMHCAPVTSLS-----LSED-QLIISGSS  252 (299)
Q Consensus       194 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------~~~~~~~~~~~~i~~~~-----~~~~-~~l~~~~~  252 (299)
                      ..-++|...+.-..+-.-|..|..|++...          ..+..+..|-++-.-.+     -.++ ++|++...
T Consensus       380 PlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          380 PLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             EEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred             ccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence            223466666633566778999999998753          34555554444322221     1245 67777643

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=84.53  E-value=15  Score=29.93  Aligned_cols=139  Identities=9%  Similarity=-0.066  Sum_probs=69.8

Q ss_pred             CCceeEEEEecCCCEEEEEc-CCeEEEEecCCcee-eeecc------CCccceeeeeccC---CCeEEEe---cCCCcEE
Q 022303          151 PNAASLVDFDFDESKIVGLI-GTRICIWRRNGLRS-VFPSR------EGTFMKGLCMRYF---DPEAVVG---CEDGTAR  216 (299)
Q Consensus       151 ~~~~~~~~~~~~~~~l~~~~-d~~i~v~d~~~~~~-~~~~~------~~~~~~~~~~~~~---~~~l~s~---~~d~~i~  216 (299)
                      -.....++|.|+++++++.. .|.|++++..++.. .+...      .......++++|+   +..|+..   ..++.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            34556688888888777666 78888887654321 11100      0111123566653   3333332   2345565


Q ss_pred             EEEcCCc----------cee-eecc-ccCCceeEEEeCCC-CeEEEEeC-------------CCcEEEEeCCCCc-----
Q 022303          217 VFDMYSR----------KCS-QIIR-MHCAPVTSLSLSED-QLIISGSS-------------LGSIAISGLSSDQ-----  265 (299)
Q Consensus       217 iwd~~~~----------~~~-~~~~-~~~~~i~~~~~~~~-~~l~~~~~-------------dg~i~iwd~~~~~-----  265 (299)
                      -|....+          +.+ ..+. ........|+|.|| .++++.+.             .|.|.=.+.. ++     
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G~ip~~n  189 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-GEPAPGN  189 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-SSBCTTC
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-CCccCCC
Confidence            5655431          111 1121 11223467899998 66666442             2444444443 22     


Q ss_pred             ---eEEEee-ccCCCCcEEEEEccCCCCeEEe
Q 022303          266 ---RVATLR-STDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       266 ---~~~~~~-~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                         ....+. ++.   ....++|+|+|.+.++
T Consensus       190 Pf~~~~i~a~G~R---Np~Gla~dp~G~L~~~  218 (347)
T 3das_A          190 PFPGSPVYSYGHR---NVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             SSTTCCEEEBCCS---BCCEEEECTTCCEEEE
T ss_pred             CCCCCeEEeeCCC---CcceEEECCCCCEEEE
Confidence               001111 232   4678999998876654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=83.94  E-value=12  Score=28.40  Aligned_cols=66  Identities=6%  Similarity=-0.145  Sum_probs=40.9

Q ss_pred             CeeEEEe-cCCEEEEEeCCCcEEEEecCCcee------EEEec--CCCceeEEEEecCCCEEEEEcCCeEEEEecCC
Q 022303          114 GVDQCRM-KRGLILTGVGDKVMRLWSLEGYKC------VEEYS--LPNAASLVDFDFDESKIVGLIGTRICIWRRNG  181 (299)
Q Consensus       114 ~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~--~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~  181 (299)
                      .+..++| |++.|... .+|.+.-.+..+.+.      -..+-  +-+.-..+.|.+++.+.++ .||.|+-++..+
T Consensus        42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCc
Confidence            5668888 66666666 777766666544211      11111  1112245888999987777 779998887643

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=83.06  E-value=2.5  Score=38.12  Aligned_cols=38  Identities=8%  Similarity=0.358  Sum_probs=32.1

Q ss_pred             cCeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecC
Q 022303          113 VGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSL  150 (299)
Q Consensus       113 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  150 (299)
                      ..|.++.+++.++++-+.|.++|+|++.+++++.+...
T Consensus       222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            34666666777999999999999999999999887765

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=81.95  E-value=6.6  Score=34.68  Aligned_cols=59  Identities=8%  Similarity=0.041  Sum_probs=41.9

Q ss_pred             eeEEEeCCC-CeEEEEeCC------------CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          236 VTSLSLSED-QLIISGSSL------------GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       236 i~~~~~~~~-~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      .-.|+|+|. .++++-..+            ..+.+.+..+++..+-+..+.+. .++.++|+||++.|+..-
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~ga-E~TG~~fspDg~tlfvni  549 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGC-EVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTC-EEEEEEECTTSSEEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCc-cCcCeeECCCCCEEEEEE
Confidence            456889988 655544322            23566677778876666666554 999999999999988753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=80.67  E-value=0.43  Score=38.64  Aligned_cols=45  Identities=31%  Similarity=0.544  Sum_probs=38.3

Q ss_pred             cchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHH
Q 022303           21 RATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQ   65 (299)
Q Consensus        21 ~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~   65 (299)
                      ...+..+|.|...+|+++++..+.+.+..+|+.|+.++.....|+
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~   50 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ   50 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSS
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhhe
Confidence            456788999999999999999999999999999999986444553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	299
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.002
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.004
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-07
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	2e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-04
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	5e-05
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	6e-05
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-04

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.0 bits (154), Expect = 3e-12
 Identities = 22/158 (13%), Positives = 53/158 (33%), Gaps = 6/158 (3%)

Query: 107 QWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESK 165
                 V          L ++G  D   +LW +    C + ++   +  + + F  + + 
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240

Query: 166 IV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA---VVGCEDGTARVFDMY 221
              G       ++     + +        + G+    F       + G +D    V+D  
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300

Query: 222 SRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI 258
               + ++  H   V+ L +++D   + +GS    + I
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 33/289 (11%), Positives = 73/289 (25%), Gaps = 17/289 (5%)

Query: 7   SRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQL 66
           +    P  +   + R T+      I  M + +     LV  S   K           +  
Sbjct: 34  TNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRL-LVSASQDGKLIIWDSYTTNKVHA 92

Query: 67  LYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLIL 126
           +  +       + +    ++    + +          + +   +  +      +     L
Sbjct: 93  IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152

Query: 127 TGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD--------FDESKIVGLIGTRICIW- 177
                      +      +E        +    D             + G       +W 
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212

Query: 178 -RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARV--FDMYSRKCSQIIRMHCA 234
            R    R  F   E   +  +C          G +D T R+          +        
Sbjct: 213 VREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271

Query: 235 PVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICL 282
            +TS+S S+  +L+++G    +  +       R   L        + CL
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG--HDNRVSCL 318

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.4 bits (129), Expect = 4e-09
 Identities = 36/269 (13%), Positives = 84/269 (31%), Gaps = 26/269 (9%)

Query: 16  RSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFS 75
            +     T++     +  + F   G       + +            +  +     +  S
Sbjct: 47  ETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSS 106

Query: 76  NTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRG--LILTGVGDKV 133
            +   +    +     K  +    +    +  +  H   V   R  +   LI +   D+ 
Sbjct: 107 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166

Query: 134 MRLWSLEGYKCVEEYSLPNAA-------------SLVDFDFDESKIVGLIGTRICIWRRN 180
           +R+W +   +C  E                    S+ +    E+K  G  G  +    R+
Sbjct: 167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 226

Query: 181 GLRSVFPSREGTFMK----------GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR 230
               ++    G  +           G+         +   +D T RV+D  +++C + + 
Sbjct: 227 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 286

Query: 231 MHCAPVTSLSLSED-QLIISGSSLGSIAI 258
            H   VTSL   +    +++GS   ++ +
Sbjct: 287 AHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.3 bits (95), Expect = 8e-05
 Identities = 21/167 (12%), Positives = 52/167 (31%), Gaps = 4/167 (2%)

Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR 183
           ++++   D  +++W  E             +          K++      + I   +   
Sbjct: 31  VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 90

Query: 184 SVFPSREGTFMKGLCMRYFDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS 240
                        +      P     V    D T +++++ +  C +    H   V  + 
Sbjct: 91  FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 150

Query: 241 LSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQ 286
            ++D  LI S S+  ++ +  +++ +  A LR        I      
Sbjct: 151 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 197

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 22/161 (13%), Positives = 61/161 (37%), Gaps = 10/161 (6%)

Query: 105 IDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDES 164
           +   + H+  V   +     +++G  D  +R+W +E   C+   +   + +    +  ++
Sbjct: 170 LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT-SGMELKDN 228

Query: 165 KIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMR--YFDPEAVVGCEDGTARVFDMY 221
            +V G   + + IW     + +   +     +       +     +   +DGT +++D+ 
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288

Query: 222 SRKCSQIIRM-----HCAPVTSLSLSEDQLII-SGSSLGSI 256
           + +  + +           V  +  S  +L+   GS  G+ 
Sbjct: 289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE 329

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 31/265 (11%), Positives = 76/265 (28%), Gaps = 7/265 (2%)

Query: 16  RSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFS 75
            + K   T+    G +                  +             L      +    
Sbjct: 45  VTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH 104

Query: 76  NTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMR 135
                 +    +           +   +       H   V   +     +++G  D +++
Sbjct: 105 LHEKRVVSGSRDATLRVWDIETGQCLHV----LMGHVAAVRCVQYDGRRVVSGAYDFMVK 160

Query: 136 LWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMK 195
           +W  E   C+                    + G + T I +W       +  +  G    
Sbjct: 161 VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH-TLTGHQSL 219

Query: 196 GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS--EDQLIISGSSL 253
              M   D   V G  D T +++D+ + +C Q ++      ++++        +I+ S  
Sbjct: 220 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD 279

Query: 254 GSIAISGLSSDQRVATLRSTDCTGH 278
           G++ +  L + + +  L + +  G 
Sbjct: 280 GTVKLWDLKTGEFIRNLVTLESGGS 304

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 25/165 (15%), Positives = 56/165 (33%), Gaps = 2/165 (1%)

Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR 183
            I++G  D  +++WS    KC+          +      ++ I+     R          
Sbjct: 29  RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG-VWSSQMRDNIIISGSTDRTLKVWNAETG 87

Query: 184 SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE 243
               +  G      CM   +   V G  D T RV+D+ + +C  ++  H A V  +    
Sbjct: 88  ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG 147

Query: 244 DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL 288
            +++        + +    ++  + TL+      + +       +
Sbjct: 148 RRVVSGAYD-FMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVV 191

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 4e-07
 Identities = 36/252 (14%), Positives = 80/252 (31%), Gaps = 12/252 (4%)

Query: 16  RSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFS 75
            + + +  +    G ++C+ +            +  + W+          + +C+     
Sbjct: 43  NTLECKRILTGHTGSVLCLQYDE-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 101

Query: 76  NTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMR 135
             +   M    ++ ++     A             H   V+        I++  GD+ ++
Sbjct: 102 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK 161

Query: 136 LWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMK 195
           +W+    + V   +            D   + G     I +W       +    EG    
Sbjct: 162 VWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR-VLEGHEEL 220

Query: 196 GLCMRYFDPEAVVGCEDGTARVFDMYS---------RKCSQIIRMHCAPVTSLSLSEDQL 246
             C+R+ +   V G  DG  +V+D+ +           C + +  H   V  L    +  
Sbjct: 221 VRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD-EFQ 279

Query: 247 IISGSSLGSIAI 258
           I+S S   +I I
Sbjct: 280 IVSSSHDDTILI 291

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (98), Expect = 2e-06
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 25 ESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKL 63
          +SL  +++  IFS L   +L++ S VCK W  + +   L
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 44/285 (15%), Positives = 77/285 (27%), Gaps = 31/285 (10%)

Query: 5   RSSRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLL 64
           R S  S   K   +   ++  S +  I  + FS  G F              I NR  ++
Sbjct: 98  RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM 157

Query: 65  QLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRG- 123
            L   +   +S     S    +     +  R                             
Sbjct: 158 ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG 217

Query: 124 -LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL--------VDFDFDESKIV-GLIGTR 173
             I  G  D+ +R+W  E    VE     N +          V F  D   +V G +   
Sbjct: 218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 277

Query: 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV-------------VGCEDGTARVFDM 220
           + +W      +   S+               + V              G +D     +D 
Sbjct: 278 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 337

Query: 221 YSRKCSQIIRMHCAPVTSLSLSED-------QLIISGSSLGSIAI 258
            S     +++ H   V S++++          +  +GS      I
Sbjct: 338 KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 3e-05
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 207 VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSS 252
           + G +D   RV+D  ++K    +  H   V +L  +   +++SGS+
Sbjct: 27  ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGST 72

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 1/63 (1%)

Query: 197 LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ-IIRMHCAPVTSLSLSEDQLIISGSSLGS 255
           +   Y     +V   +    ++++ S K     I      + S++     L+ +    G 
Sbjct: 287 ITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQ 346

Query: 256 IAI 258
             +
Sbjct: 347 SFL 349

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (91), Expect = 5e-05
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 24  IESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMR 83
           I SL  +I   IF+ L F D++    V ++WN II +   L         F   S     
Sbjct: 6   ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENF--VSPKGFN 63

Query: 84  LHLEELAMKHHRFALEE 100
               +L+ K+ + + ++
Sbjct: 64  SLNLKLSQKYPKLSQQD 80

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 6e-05
 Identities = 11/46 (23%), Positives = 15/46 (32%)

Query: 25 ESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCK 70
                I   I S L    L     VCK W  + +   L + L  +
Sbjct: 16 ARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER 61

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 9/72 (12%), Positives = 22/72 (30%)

Query: 24 IESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMR 83
          I  L  ++   + S L   DL++ +  C+ W  +     L +    +            +
Sbjct: 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRK 78

Query: 84 LHLEELAMKHHR 95
          +          +
Sbjct: 79 VIKPGFIHSPWK 90

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 23/237 (9%), Positives = 56/237 (23%), Gaps = 7/237 (2%)

Query: 28  NGDIICMIFSSLGFF----DLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMR 83
           +  I        G            ++             L       +  + +  S + 
Sbjct: 97  DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC 156

Query: 84  LHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYK 143
                           +  +   Q                 + TG  D  +R W L   +
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216

Query: 144 CVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRR-NGLRSVFPSREGTFMKGLCMRYF 202
            ++++   +    + +      +   + +        N           + +  L   Y 
Sbjct: 217 QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYC 276

Query: 203 DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI 258
               V   +D     +           +   + V S  +S D + I++GS      +
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATV 332

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 5e-04
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 198 CMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVT----SLSLSEDQLIISGSSL 253
                  +      D T RV+D+ + KC Q   +    +      +  + +  IIS S  
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317

Query: 254 GSIAI 258
           G++  
Sbjct: 318 GTLNF 322

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 3/93 (3%)

Query: 207 VVGCEDGTARVFDMYSRKCSQIIRM--HCAPVTSLSLSED-QLIISGSSLGSIAISGLSS 263
            +   +    +++    K  Q+  +  H   VT +  + D   I++  +  +  +  L  
Sbjct: 23  AICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 82

Query: 264 DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296
                TL          C+ +            
Sbjct: 83  RTWKPTLVILRINRAARCVRWAPNEKKFAVGSG 115

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.4 bits (87), Expect = 6e-04
 Identities = 10/85 (11%), Positives = 22/85 (25%), Gaps = 1/85 (1%)

Query: 175 CIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS-RKCSQIIRMHC 233
             W     +    S +            +     G  D    ++ +    K  + +  H 
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258

Query: 234 APVTSLSLSEDQLIISGSSLGSIAI 258
             V +L       ++S  +   I  
Sbjct: 259 DGVNNLLWETPSTLVSSGADACIKR 283

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	299
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.98
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.95
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.95
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.94
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.93
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.93
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.93
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.92
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.91
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.91
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.91
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.87
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.85
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.79
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.77
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.74
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.74
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.73
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.73
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.68
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.66
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.6
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.59
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.48
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.45
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.4
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.36
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.35
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.17
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.17
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.14
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.07
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.95
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.89
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.89
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.87
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.77
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.73
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.68
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.59
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.57
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.53
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.44
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.44
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.38
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.32
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.29
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.2
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.17
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.05
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.84
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	97.74
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.69
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.65
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.6
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.53
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.43
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	97.29
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.19
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.17
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.97
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.78
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.77
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.67
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.66
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.24
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.19
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.08
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.01
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.01
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.84
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.6
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.48
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.84
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.55
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.32
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.21
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	93.09
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	91.16
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	90.56
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	90.29
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	90.05
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.25
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	88.65
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	88.39
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	88.01
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	85.3
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	84.84

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-32  Score=224.23  Aligned_cols=256  Identities=10%  Similarity=0.062  Sum_probs=200.0

Q ss_pred             hccCccchhhHHHhhhhHHHHhh----hhhHHHHHHhhhcCCCCC-CCchhhhhhhhhhhccccceeecCcee-------
Q 022303           37 SSLGFFDLVRCSAVCKSWNAIIN----RCKLLQLLYCKLHGFSNT-SGSSMRLHLEELAMKHHRFALEEGRID-------  104 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~~~~l~~----~~~~w~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~l~~g~~~-------  104 (299)
                      ..++|.+.|.|++|+|++++|++    .+++|+............ ......-++.++.++|+++.++.+..+       
T Consensus        46 ~~~~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          46 NTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             EECCCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccc
Confidence            44589999999999999999998    467886532221100000 001111234467788888777665433       


Q ss_pred             --------eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-EEcCC
Q 022303          105 --------IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GLIGT  172 (299)
Q Consensus       105 --------~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~  172 (299)
                              ...+.+|...|.++.+ +++ ++++++.|+.|++|++.++++......+...+ .++|++++..++ ++.|+
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~  205 (337)
T d1gxra_         126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN  205 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                    3344678889999988 555 99999999999999999999988888776554 599999999998 99999


Q ss_pred             eEEEEecCCceeee-eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEE
Q 022303          173 RICIWRRNGLRSVF-PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG  250 (299)
Q Consensus       173 ~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~  250 (299)
                      .+++||+++.+... ..+.+.+. .+++++++..+++++.|+.+++||+++++.... ..|...|++++|+|+ ++|+++
T Consensus       206 ~v~i~d~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~i~~v~~s~~g~~l~s~  283 (337)
T d1gxra_         206 TVRSWDLREGRQLQQHDFTSQIF-SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAYCGKWFVST  283 (337)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEE-EEEECTTSSEEEEEETTSCEEEEETTSSCEEEE-CCCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccceeecccccccceE-EEEEcccccccceeccccccccccccccccccc-cccccccceEEECCCCCEEEEE
Confidence            99999999876432 23334333 457889999999999999999999998877654 478999999999999 999999


Q ss_pred             eCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          251 SSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       251 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +.||.|++||+.+++.+..+.. ..  .|.+++|+|+|++|++||.-
T Consensus       284 s~Dg~i~iwd~~~~~~~~~~~~-~~--~v~~~~~s~d~~~l~t~s~D  327 (337)
T d1gxra_         284 GKDNLLNAWRTPYGASIFQSKE-SS--SVLSCDISVDDKYIVTGSGD  327 (337)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEC-SS--CEEEEEECTTSCEEEEEETT
T ss_pred             eCCCeEEEEECCCCCEEEEccC-CC--CEEEEEEeCCCCEEEEEeCC
Confidence            9999999999999999888764 44  89999999999999999863

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.98  E-value=3.4e-32  Score=222.34  Aligned_cols=249  Identities=12%  Similarity=0.017  Sum_probs=195.2

Q ss_pred             chhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecC
Q 022303           22 ATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEG  101 (299)
Q Consensus        22 ~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g  101 (299)
                      ..+.+|+.+.......+.+|.+.|+|++|+|++++|++                ...|+.+++|..  .....       
T Consensus        38 ~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~lat----------------g~~dg~i~iwd~--~~~~~-------   92 (311)
T d1nr0a1          38 TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS----------------GDVHGNVRIWDT--TQTTH-------   92 (311)
T ss_dssp             TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEE----------------EETTSEEEEEES--SSTTC-------
T ss_pred             CEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEec----------------cccCceEeeeee--ecccc-------
Confidence            45678888776666677899999999999999999987                336788888833  21111       


Q ss_pred             ceeeEEeeccccCeeEEEe-cCC-EEEEEeC--CCcEEEEecCCceeEEEecCCCcee-EEEEecCCCE-EE-EEcCCeE
Q 022303          102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVG--DKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESK-IV-GLIGTRI  174 (299)
Q Consensus       102 ~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~-l~-~~~d~~i  174 (299)
                       .....+.+|.++|.++.| +++ +|++++.  +..+++|++++++....+..|...+ .++|+|++++ ++ ++.|+.|
T Consensus        93 -~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i  171 (311)
T d1nr0a1          93 -ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV  171 (311)
T ss_dssp             -CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred             -ccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence             113456899999999999 555 8888875  4569999999999988888886655 4999999886 55 8899999


Q ss_pred             EEEecCCcee--eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc-------ccCCceeEEEeCCC-
Q 022303          175 CIWRRNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-------MHCAPVTSLSLSED-  244 (299)
Q Consensus       175 ~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~~~~-  244 (299)
                      ++||+++.+.  ....+...+. .++++|++..+++++.|+.|++||..+++.+..+.       +|...|++++|+|+ 
T Consensus       172 ~i~d~~~~~~~~~~~~~~~~i~-~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~  250 (311)
T d1nr0a1         172 AIFEGPPFKFKSTFGEHTKFVH-SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG  250 (311)
T ss_dssp             EEEETTTBEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred             cccccccccccccccccccccc-ccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence            9999998763  3334444433 56889999999999999999999999887766653       57889999999999 


Q ss_pred             CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          245 QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       245 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      ++|++|+.||.|+|||++++++++++..+... ....+.+.+++.+|++++.-+
T Consensus       251 ~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG  303 (311)
T d1nr0a1         251 TKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANG  303 (311)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTC
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCC
Confidence            99999999999999999999999999876542 223334445667888887644

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4.5e-31  Score=214.06  Aligned_cols=255  Identities=13%  Similarity=0.182  Sum_probs=195.4

Q ss_pred             hhccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCce-------
Q 022303           36 FSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRI-------  103 (299)
Q Consensus        36 ~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~-------  103 (299)
                      +++.+|.+.|++++|+|++++|++     ++++|+....+.....  ..+.-.  +.++.+++.+..++.+..       
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~--~~h~~~--V~~~~~~~~~~~~~~~~~~~~~~~~   86 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL--KGHTDS--VQDISFDHSGKLLASCSADMTIKLW   86 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE--CCCSSC--EEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEE--eCCCCc--EEEEeeecccccccccccccccccc
Confidence            467799999999999999999998     4566654211111000  001111  224455555544433221       


Q ss_pred             ------eeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCe
Q 022303          104 ------DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTR  173 (299)
Q Consensus       104 ------~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~  173 (299)
                            ....+.+|...+.++.+ +++ .+++++.|+.+++||+.+++.+..+..+..... +++++++++++ ++.|+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  166 (317)
T d1vyhc1          87 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT  166 (317)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCe
Confidence                  14445788899999988 555 999999999999999999999999988766555 99999999999 999999


Q ss_pred             EEEEecCCceee--eeccCCccceeeeec--------------------cCCCeEEEecCCCcEEEEEcCCcceeeeccc
Q 022303          174 ICIWRRNGLRSV--FPSREGTFMKGLCMR--------------------YFDPEAVVGCEDGTARVFDMYSRKCSQIIRM  231 (299)
Q Consensus       174 i~v~d~~~~~~~--~~~~~~~~~~~~~~~--------------------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  231 (299)
                      |++|+..+....  +..+..... .+++.                    ..+..+++++.|+.|++||+++++.+..+..
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  245 (317)
T d1vyhc1         167 VRVWVVATKECKAELREHRHVVE-CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG  245 (317)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEE-EEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEeeccceeeEEEecCCCCce-EEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeC
Confidence            999999876532  222222211 12222                    2234588999999999999999999999999


Q ss_pred             cCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          232 HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       232 ~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      |...|.+++++|+ ++|++|+.||.|++||+++++++.++.+|..  +|++++|+|++++|++|+.-
T Consensus       246 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~--~V~~~~~s~~~~~l~s~s~D  310 (317)
T d1vyhc1         246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTAPYVVTGSVD  310 (317)
T ss_dssp             CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSSSSCEEEEETT
T ss_pred             CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCC
Confidence            9999999999999 9999999999999999999999999999988  99999999999999999864

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=3.8e-31  Score=221.25  Aligned_cols=224  Identities=17%  Similarity=0.147  Sum_probs=179.9

Q ss_pred             cchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCce-eeEEeeccccCeeEEEe
Q 022303           42 FDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRI-DIDQWKAHSVGVDQCRM  120 (299)
Q Consensus        42 ~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~-~~~~~~~h~~~i~~~~~  120 (299)
                      .++|+|++|+|+++++|+                ...++.+++|..           ..+.. .+..+++|.++|.++.|
T Consensus         7 ~~pIt~~~~s~dg~~la~----------------~~~~~~i~iw~~-----------~~~~~~~~~~l~gH~~~V~~l~f   59 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAI----------------CPNNHEVHIYEK-----------SGNKWVQVHELKEHNGQVTGVDW   59 (371)
T ss_dssp             SSCCCEEEECTTSSEEEE----------------ECSSSEEEEEEE-----------ETTEEEEEEEEECCSSCEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEE----------------EeCCCEEEEEEC-----------CCCCEEEEEEecCCCCCEEEEEE
Confidence            477999999999999986                235677788832           22222 36677999999999999


Q ss_pred             -cCC-EEEEEeCCCcEEEEecCCceeEE--EecCCC-ceeEEEEecCCCEEE-EEcCCeEEEEecCCce--ee----eec
Q 022303          121 -KRG-LILTGVGDKVMRLWSLEGYKCVE--EYSLPN-AASLVDFDFDESKIV-GLIGTRICIWRRNGLR--SV----FPS  188 (299)
Q Consensus       121 -~~~-~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~-~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~----~~~  188 (299)
                       |++ +|++|+.|++|++||+.+++...  .+..+. .+..++|+|+++.++ ++.|+.+++|++....  ..    ...
T Consensus        60 sp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~  139 (371)
T d1k8kc_          60 APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKP  139 (371)
T ss_dssp             ETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred             CCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccc
Confidence             666 99999999999999998776544  344554 455699999999999 9999999999987543  11    122


Q ss_pred             cCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc------------------ceeeeccccCCceeEEEeCCC-CeEEE
Q 022303          189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR------------------KCSQIIRMHCAPVTSLSLSED-QLIIS  249 (299)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------------------~~~~~~~~~~~~i~~~~~~~~-~~l~~  249 (299)
                      +.+.+. .++++|++..+++|+.|+.+++||....                  +.+.....|...|.+++|+|+ ++|++
T Consensus       140 ~~~~v~-~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s  218 (371)
T d1k8kc_         140 IRSTVL-SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW  218 (371)
T ss_dssp             CCSCEE-EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred             cccccc-cccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccc
Confidence            333333 4678899999999999999999997643                  234455578889999999999 99999


Q ss_pred             EeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          250 GSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       250 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ++.|+.|++||+++++.+..+..|..  +|.+++|+|++++|++|+
T Consensus       219 ~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~s~~fs~d~~~la~g~  262 (371)
T d1k8kc_         219 VSHDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAGH  262 (371)
T ss_dssp             EETTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEET
T ss_pred             cccCCcceEEeeecccceeeeecccc--cceeeeecCCCCEEEEEc
Confidence            99999999999999999999999888  999999999999998875

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.9e-29  Score=206.98  Aligned_cols=192  Identities=15%  Similarity=0.172  Sum_probs=161.6

Q ss_pred             eeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEec
Q 022303          104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWRR  179 (299)
Q Consensus       104 ~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~  179 (299)
                      ..++|+||.++|++++| +++ +|+||+.||+|++||+.+++.+..+..|...+ .++|+|++++++ ++.|+.+.+|+.
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~  126 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence            36788999999999999 666 99999999999999999999999999876655 499999999998 999999999985


Q ss_pred             CC------------------------------------------------------------------------------
Q 022303          180 NG------------------------------------------------------------------------------  181 (299)
Q Consensus       180 ~~------------------------------------------------------------------------------  181 (299)
                      ..                                                                              
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  206 (340)
T d1tbga_         127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA  206 (340)
T ss_dssp             SSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTT
T ss_pred             cccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCc
Confidence            43                                                                              


Q ss_pred             ---------ce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc--ccCCceeEEEeCCC-CeE
Q 022303          182 ---------LR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED-QLI  247 (299)
Q Consensus       182 ---------~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l  247 (299)
                               ..  ..+..+.+.+. .++++|++..+++|+.|+.|++||++..+.+..+.  .+...|.+++|+|+ ++|
T Consensus       207 ~v~i~d~~~~~~~~~~~~h~~~i~-~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
T d1tbga_         207 SAKLWDVREGMCRQTFTGHESDIN-AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL  285 (340)
T ss_dssp             EEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEE
T ss_pred             eEEEEECCCCcEEEEEeCCCCCeE-EEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEE
Confidence                     00  01111222222 45788888899999999999999999887766553  56678999999999 999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          248 ISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       248 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      ++|+.||.|++||+.+++++.++.+|..  +|++++|+|++++|++||.-+
T Consensus       286 ~~g~~dg~i~iwd~~~~~~~~~~~~H~~--~V~~l~~s~d~~~l~s~s~Dg  334 (340)
T d1tbga_         286 LAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTS
T ss_pred             EEEECCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEccCC
Confidence            9999999999999999999999999988  999999999999999998643

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-29  Score=212.02  Aligned_cols=273  Identities=15%  Similarity=0.195  Sum_probs=199.9

Q ss_pred             chhccCcHHHHH----HHhhccCccchhhHHHhhhhHHHHhh----hhhHHHHHHhhhc-CCCCC-------------CC
Q 022303           22 ATIESLNGDIIC----MIFSSLGFFDLVRCSAVCKSWNAIIN----RCKLLQLLYCKLH-GFSNT-------------SG   79 (299)
Q Consensus        22 ~~~~~~~~~~~~----~i~~~~~h~~~v~~~~~~~~~~~l~~----~~~~w~~~~~~~~-~~~~~-------------~d   79 (299)
                      .....|+++...    .+...++|.+.|+|++|+|++++||+    ++++|+....+.. .....             ..
T Consensus        38 ~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (388)
T d1erja_          38 DYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS  117 (388)
T ss_dssp             SCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC----------------
T ss_pred             CcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccc
Confidence            344456654432    22344579999999999999999988    4667765221110 00000             00


Q ss_pred             chhhhhhhhhhhccccceeecCcee-------------eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCcee
Q 022303           80 SSMRLHLEELAMKHHRFALEEGRID-------------IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKC  144 (299)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~g~~~-------------~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~  144 (299)
                      ......+.++.++|+++.++.+..+             +..+.+|...|.++.+ +++ .+++++.++.+++||..+...
T Consensus       118 ~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  197 (388)
T d1erja_         118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC  197 (388)
T ss_dssp             -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             cCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccc
Confidence            0111223466778888777765433             4555789999999988 444 899999999999999999988


Q ss_pred             EEEecCCCceeEEEEec-CCCEEE-EEcCCeEEEEecCCceeee---------eccCCccceeeeeccCCCeEEEecCCC
Q 022303          145 VEEYSLPNAASLVDFDF-DESKIV-GLIGTRICIWRRNGLRSVF---------PSREGTFMKGLCMRYFDPEAVVGCEDG  213 (299)
Q Consensus       145 ~~~~~~~~~~~~~~~~~-~~~~l~-~~~d~~i~v~d~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~s~~~d~  213 (299)
                      ......+.....+.+.+ ++++|+ ++.|+.|++||..+.....         ..+.+.+. .+++++++..+++++.|+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~s~~~~~l~s~~~d~  276 (388)
T d1erja_         198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY-SVVFTRDGQSVVSGSLDR  276 (388)
T ss_dssp             EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEE-EEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEE-EEEECCCCCEEEEEECCC
Confidence            88888887777766655 678888 9999999999998765221         12233333 467888899999999999


Q ss_pred             cEEEEEcCCcce------------eeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEE
Q 022303          214 TARVFDMYSRKC------------SQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHII  280 (299)
Q Consensus       214 ~i~iwd~~~~~~------------~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~  280 (299)
                      .|++||++++..            ......|...|.+++|+|+ ++|++|+.||.|++||+++++++.++++|..  .|.
T Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~--~V~  354 (388)
T d1erja_         277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVI  354 (388)
T ss_dssp             EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEE
T ss_pred             cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC--CEE
Confidence            999999976542            2333467889999999999 9999999999999999999999999999988  899


Q ss_pred             EEE------ccCCCCeEEeeecc
Q 022303          281 CLM------YPQFLHMLFFLCFL  297 (299)
Q Consensus       281 ~~~------~s~~g~~l~s~s~~  297 (299)
                      +++      |+|++.+|++||.-
T Consensus       355 ~~~~~~~~~~spd~~~l~s~s~D  377 (388)
T d1erja_         355 SVAVANGSSLGPEYNVFATGSGD  377 (388)
T ss_dssp             EEEECSSCTTCTTCEEEEEEETT
T ss_pred             EEEEecCcccCCCCCEEEEEeCC
Confidence            886      67899999999853

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=2.5e-28  Score=199.12  Aligned_cols=190  Identities=12%  Similarity=0.120  Sum_probs=159.0

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeE--EEecCCCc-eeEEEEecCCCEEE-EEc--CCeEEE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCV--EEYSLPNA-ASLVDFDFDESKIV-GLI--GTRICI  176 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~-~~~~~~~~~~~~l~-~~~--d~~i~v  176 (299)
                      .+.+.+|.+.|++++| |++ +|++|+.||+|++||+.+++..  ..+..|.. +..++|+|+++.++ ++.  +..+++
T Consensus        51 ~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v  130 (311)
T d1nr0a1          51 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV  130 (311)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred             eEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccc
Confidence            5677899999999999 666 9999999999999999887643  45666654 44599999999988 554  456899


Q ss_pred             EecCCce--eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC
Q 022303          177 WRRNGLR--SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS  252 (299)
Q Consensus       177 ~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~  252 (299)
                      |+.++.+  ..+..+...+. .++|++++++ +++|+.|+.|++||+++++....+..|..+|+++.++|+ +++++++.
T Consensus       131 ~~~~~~~~~~~l~~h~~~v~-~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~  209 (311)
T d1nr0a1         131 FLFDTGTSNGNLTGQARAMN-SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG  209 (311)
T ss_dssp             EETTTCCBCBCCCCCSSCEE-EEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccccccccc-cccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccc
Confidence            9998764  34445555444 4578888886 888999999999999999999999999999999999999 99999999


Q ss_pred             CCcEEEEeCCCCceEEEeec-------cCCCCcEEEEEccCCCCeEEeeecc
Q 022303          253 LGSIAISGLSSDQRVATLRS-------TDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       253 dg~i~iwd~~~~~~~~~~~~-------~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      |+.|++||+++++.+..+..       |..  .|++++|+|+|++|++|+.-
T Consensus       210 d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~--~V~~~~~s~~~~~l~tgs~D  259 (311)
T d1nr0a1         210 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSG--SVFGLTWSPDGTKIASASAD  259 (311)
T ss_dssp             TSCEEEEETTTCCEEEECBCTTSSSCSSSS--CEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccccccccccccc--cccccccCCCCCEEEEEeCC
Confidence            99999999999988877753       344  89999999999999999853

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=4.7e-27  Score=189.99  Aligned_cols=191  Identities=9%  Similarity=0.099  Sum_probs=153.0

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEec-CCCce-eEEEEecCCCEEEEEcCCeEEEEecC
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS-LPNAA-SLVDFDFDESKIVGLIGTRICIWRRN  180 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~~d~~i~v~d~~  180 (299)
                      .++++||.++|++++| |++ +|+||+.||+|++||+++++++..+. .|... ..++|+|++++++++.|+.+++|+..
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccC
Confidence            5778999999999999 666 99999999999999999999988875 45544 45999999988889999999999975


Q ss_pred             Cce-----eee------------------------------------eccCCccceeeeeccCCCeEEEecCCCcEEEEE
Q 022303          181 GLR-----SVF------------------------------------PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFD  219 (299)
Q Consensus       181 ~~~-----~~~------------------------------------~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd  219 (299)
                      ...     ...                                    ..........+++++++..+++|+.|+.|++||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d  164 (299)
T d1nr0a2          85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYK  164 (299)
T ss_dssp             SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             Cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            421     000                                    000111122456788888899999999999999


Q ss_pred             cCCcceee-eccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEE---EeeccCCCCcEEEEEccCCCCeEEee
Q 022303          220 MYSRKCSQ-IIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVA---TLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       220 ~~~~~~~~-~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      +++++... ....|...|++++|+|+ ++|++++.|+.|++||+.++..+.   .+..|..  +|++++|+|++++|++|
T Consensus       165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~~~~~l~sg  242 (299)
T d1nr0a2         165 LSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA--KVACVSWSPDNVRLATG  242 (299)
T ss_dssp             EETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS--CEEEEEECTTSSEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccceEEE
Confidence            98776543 23378899999999999 999999999999999998876553   3445666  89999999999999999


Q ss_pred             ecc
Q 022303          295 CFL  297 (299)
Q Consensus       295 s~~  297 (299)
                      +.-
T Consensus       243 s~d  245 (299)
T d1nr0a2         243 SLD  245 (299)
T ss_dssp             ETT
T ss_pred             cCC
Confidence            863

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=5.5e-26  Score=183.72  Aligned_cols=190  Identities=15%  Similarity=0.145  Sum_probs=156.2

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee---------------------------
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS---------------------------  155 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------------------------  155 (299)
                      ..+|+||.++|++++| |++ +|+||+.||+|++||+.+++++.++..|...+                           
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ   89 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence            4567999999999999 566 99999999999999999888777776433222                           


Q ss_pred             ----------------EEEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEE
Q 022303          156 ----------------LVDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTAR  216 (299)
Q Consensus       156 ----------------~~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  216 (299)
                                      .+.++++++.++ ++.|+.+++||++++.  ..+..+..... .+++++++..+++++.|+.|+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~v~  168 (317)
T d1vyhc1          90 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR-MVRPNQDGTLIASCSNDQTVR  168 (317)
T ss_dssp             SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECTTSSEEEEEETTSCEE
T ss_pred             ccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcce-eeecccCCCEEEEEeCCCeEE
Confidence                            244555666666 7778888888887764  33344444333 467888899999999999999


Q ss_pred             EEEcCCcceeeeccccCCceeEEEeCCC---------------------CeEEEEeCCCcEEEEeCCCCceEEEeeccCC
Q 022303          217 VFDMYSRKCSQIIRMHCAPVTSLSLSED---------------------QLIISGSSLGSIAISGLSSDQRVATLRSTDC  275 (299)
Q Consensus       217 iwd~~~~~~~~~~~~~~~~i~~~~~~~~---------------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  275 (299)
                      +|+..+++.+..+..|...+.+++++|+                     .++++++.|+.|++||+++++++.++.+|..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  248 (317)
T d1vyhc1         169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  248 (317)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC
Confidence            9999999999999889999999988764                     2689999999999999999999999999988


Q ss_pred             CCcEEEEEccCCCCeEEeeecc
Q 022303          276 TGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       276 ~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                        +|.+++|+|++++|++|+..
T Consensus       249 --~v~~~~~~~~~~~l~s~~~d  268 (317)
T d1vyhc1         249 --WVRGVLFHSGGKFILSCADD  268 (317)
T ss_dssp             --CEEEEEECSSSSCEEEEETT
T ss_pred             --CEEEEEECCCCCEEEEEECC
Confidence              99999999999999999854

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.2e-26  Score=186.43  Aligned_cols=205  Identities=12%  Similarity=0.194  Sum_probs=165.6

Q ss_pred             hhhhccccceeecCcee-eEEe----------------eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCC--ceeEE
Q 022303           88 ELAMKHHRFALEEGRID-IDQW----------------KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG--YKCVE  146 (299)
Q Consensus        88 ~~~~~~~~~~l~~g~~~-~~~~----------------~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~--~~~~~  146 (299)
                      ++.++++++.+++|... ++.+                .+|.+.|.+++| +++ +|++|+.||.|++||+..  .+...
T Consensus        56 ~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  135 (337)
T d1gxra_          56 AVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA  135 (337)
T ss_dssp             EEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred             EEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccc
Confidence            56677777766665422 3332                478899999999 666 999999999999999874  45566


Q ss_pred             EecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceee--eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCC
Q 022303          147 EYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS  222 (299)
Q Consensus       147 ~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  222 (299)
                      .+..+...+. ++++|++..++ ++.++.+++|++.+.+..  ...+..... .+++++++..+++++.|+.+++||+++
T Consensus       136 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~-~l~~s~~~~~~~~~~~d~~v~i~d~~~  214 (337)
T d1gxra_         136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS-CIDISNDGTKLWTGGLDNTVRSWDLRE  214 (337)
T ss_dssp             EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence            6777765554 89999999999 999999999999987633  333444433 467888899999999999999999999


Q ss_pred             cceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          223 RKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       223 ~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ++.+..+ .+...|.+++|+|+ +++++|+.|+.+++||+++++... ...|..  .|++++|+|+|++|++|+.-
T Consensus       215 ~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~--~i~~v~~s~~g~~l~s~s~D  286 (337)
T d1gxra_         215 GRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHES--CVLSLKFAYCGKWFVSTGKD  286 (337)
T ss_dssp             TEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSS--CEEEEEECTTSSEEEEEETT
T ss_pred             ceeeccc-ccccceEEEEEcccccccceecccccccccccccccccc-cccccc--ccceEEECCCCCEEEEEeCC
Confidence            9988777 57889999999999 999999999999999999887654 445666  89999999999999998753

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=3.5e-27  Score=190.74  Aligned_cols=230  Identities=10%  Similarity=0.095  Sum_probs=160.4

Q ss_pred             hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEe-eccccCe
Q 022303           37 SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQW-KAHSVGV  115 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~h~~~i  115 (299)
                      .+.||.+.|+|++|+|++++|++                ...|+.+++|  ++.....          ++.+ .+|...|
T Consensus         7 ~~~GH~~~V~~l~~s~dg~~l~s----------------~s~Dg~v~vW--d~~~~~~----------~~~~~~~h~~~v   58 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADGKTLFS----------------ADAEGHINSW--DISTGIS----------NRVFPDVHATMI   58 (299)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEE----------------EETTSCEEEE--ETTTCCE----------EECSSCSCSSCE
T ss_pred             EcCCCCCCcEEEEECCCCCEEEE----------------EcCCCeEEEE--ECCCCcE----------EEEEcCCCCCcE
Confidence            45699999999999999999997                2255666666  2221111          1122 3567777


Q ss_pred             eEEEe-cCCEEEEEeCCCcEEEEecCCce-----------------------------------------eEEEecCCCc
Q 022303          116 DQCRM-KRGLILTGVGDKVMRLWSLEGYK-----------------------------------------CVEEYSLPNA  153 (299)
Q Consensus       116 ~~~~~-~~~~l~s~~~dg~i~iwd~~~~~-----------------------------------------~~~~~~~~~~  153 (299)
                      +++.| +++.+++++.|+.+++|+.....                                         ..........
T Consensus        59 ~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~  138 (299)
T d1nr0a2          59 TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYN  138 (299)
T ss_dssp             EEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSC
T ss_pred             EEEEeeccceeecccceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            77777 44466666677777777653210                                         0001112233


Q ss_pred             eeEEEEecCCCEEE-EEcCCeEEEEecCCcee---eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceee--
Q 022303          154 ASLVDFDFDESKIV-GLIGTRICIWRRNGLRS---VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ--  227 (299)
Q Consensus       154 ~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--  227 (299)
                      ...++++|++++++ ++.|+.|++||+++...   ....+...+. .+++++++..+++++.|+.|++||+.++....  
T Consensus       139 ~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~  217 (299)
T d1nr0a2         139 SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT-SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT  217 (299)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEE-EEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            44588999999998 99999999999987642   2233444433 46888989999999999999999998876543  


Q ss_pred             -eccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEe--eccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          228 -IIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATL--RSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       228 -~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                       .+..|..+|++++|+|+ ++|++|+.||.|++||+++++....+  ..+... .+.++.| +++++|++||.-
T Consensus       218 ~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~-~~~~~l~s~s~D  289 (299)
T d1nr0a2         218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMS-SVNSVIW-LNETTIVSAGQD  289 (299)
T ss_dssp             CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTS-CEEEEEE-EETTEEEEEETT
T ss_pred             ccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCC-cEEEEEE-CCCCEEEEEeCC
Confidence             44578899999999999 99999999999999999886543332  333332 5666655 567889988753

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.1e-27  Score=194.40  Aligned_cols=230  Identities=18%  Similarity=0.270  Sum_probs=168.9

Q ss_pred             HhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccC
Q 022303           35 IFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVG  114 (299)
Q Consensus        35 i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~  114 (299)
                      ...+.+|.+.|.+ ++++++++|++                ...|+++++|..  ...          ..++++.+|.+.
T Consensus         9 ~~~l~GH~~~V~s-~~~~~g~~l~s----------------gs~Dg~i~vWd~--~~~----------~~~~~~~~h~~~   59 (342)
T d2ovrb2           9 PKVLKGHDDHVIT-CLQFCGNRIVS----------------GSDDNTLKVWSA--VTG----------KCLRTLVGHTGG   59 (342)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEE----------------EETTSCEEEEET--TTC----------CEEEECCCCSSC
T ss_pred             CEEECCcCCceEE-EEEECCCEEEE----------------EeCCCeEEEEEC--CCC----------CEEEEEeCCCCC
Confidence            3456699998754 36778888987                346788888832  221          234567899999


Q ss_pred             eeEEEecCCEEEEEeCCCcEEEEecCCceeEEE-----------------------------------------------
Q 022303          115 VDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEE-----------------------------------------------  147 (299)
Q Consensus       115 i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------------------------------------  147 (299)
                      |.++.+.+++|++|+.|+++++|+.........                                               
T Consensus        60 V~~v~~~~~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~  139 (342)
T d2ovrb2          60 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA  139 (342)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSC
T ss_pred             EEEEEeCCCccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeeccccc
Confidence            999999777999999999999998754321111                                               


Q ss_pred             ---------------------------------ecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCcc
Q 022303          148 ---------------------------------YSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTF  193 (299)
Q Consensus       148 ---------------------------------~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~  193 (299)
                                                       +..| ......+.+++..++ ++.||.|++||++..+..... ..+.
T Consensus       140 ~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~-~~~~  217 (342)
T d2ovrb2         140 VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH-TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL-TGHQ  217 (342)
T ss_dssp             EEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCC-SSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEE-CCCC
T ss_pred             ceeeccccceeeeecCCCeEEEeecccceeeEEEcCc-ccccccccCCCCEEEEEeCCCeEEEeecccceeeeEe-cccc
Confidence                                             1111 112244456777888 899999999999877533222 2222


Q ss_pred             ceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc---ccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEe
Q 022303          194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR---MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATL  270 (299)
Q Consensus       194 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  270 (299)
                      ..+.++.+.++++++++.|+.|++||....+....+.   .|...+.++.+++ +++++|+.||.|++||++++++++++
T Consensus       218 ~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~s~Dg~i~iwd~~tg~~i~~~  296 (342)
T d2ovrb2         218 SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLKTGEFIRNL  296 (342)
T ss_dssp             SCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCC-CeeEEEcCCCEEEEEECCCCCEEEEE
Confidence            3355778888899999999999999999887766665   4566777777765 48999999999999999999999888


Q ss_pred             ec-----cCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          271 RS-----TDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       271 ~~-----~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      ..     |..  .|++++|+|++.+|++|+.-+
T Consensus       297 ~~~~~~~~~~--~v~~v~~s~~~~~la~g~~dG  327 (342)
T d2ovrb2         297 VTLESGGSGG--VVWRIRASNTKLVCAVGSRNG  327 (342)
T ss_dssp             EECTTGGGTC--EEEEEEECSSEEEEEEECSSS
T ss_pred             ecccCCCCCC--CEEEEEECCCCCEEEEEeCCC
Confidence            53     344  799999999999999987543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=7.6e-27  Score=191.32  Aligned_cols=152  Identities=14%  Similarity=0.189  Sum_probs=127.8

Q ss_pred             eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEecCCcee
Q 022303          109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWRRNGLRS  184 (299)
Q Consensus       109 ~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~  184 (299)
                      ..+...+....+ +.+ ++++|+.|+.|++||+.+++++..+..|...+ .++|+|++++++ ++.|+.|++||+.....
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~  260 (340)
T d1tbga_         181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE  260 (340)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             cccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccc
Confidence            345556666666 334 89999999999999999999999999876655 499999999999 99999999999998753


Q ss_pred             eee--cc-CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEe
Q 022303          185 VFP--SR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG  260 (299)
Q Consensus       185 ~~~--~~-~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd  260 (299)
                      ...  .. .......+++++++..|++|+.||.|++||+.+++.+..+.+|..+|++++|+|+ .+|++|+.||.|+|||
T Consensus       261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            321  11 1122234688899999999999999999999999999999999999999999999 8999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=1.2e-25  Score=187.59  Aligned_cols=184  Identities=14%  Similarity=0.070  Sum_probs=148.9

Q ss_pred             cccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCce--eEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEecCCce-
Q 022303          111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK--CVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWRRNGLR-  183 (299)
Q Consensus       111 h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~~~~-  183 (299)
                      +.++|+|++| +++ +|++|+.||.|++||..+++  .+..+++|...+ .++|+|++++|+ ++.|+.|++||+.+.. 
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            3578999999 666 99999999999999998775  566778876555 499999999999 9999999999998664 


Q ss_pred             -ee--eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcce----eeeccccCCceeEEEeCCC-CeEEEEeCCCc
Q 022303          184 -SV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC----SQIIRMHCAPVTSLSLSED-QLIISGSSLGS  255 (299)
Q Consensus       184 -~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~  255 (299)
                       ..  +..+...+ ..++|+|+++.+++++.|+.+++|+......    ......|...|.+++|+|+ ++|++|+.|+.
T Consensus        86 ~~~~~~~~~~~~v-~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_          86 KPTLVILRINRAA-RCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             EEEEECCCCSSCE-EEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccccccc-cccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence             12  23333333 3568899999999999999999999876543    2334478889999999999 99999999999


Q ss_pred             EEEEeCCCC------------------ceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          256 IAISGLSSD------------------QRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       256 i~iwd~~~~------------------~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      |++||....                  +.+.....|..  .|.+++|+|+|++|++++.-
T Consensus       165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~s~~~d  222 (371)
T d1k8kc_         165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG--WVHGVCFSANGSRVAWVSHD  222 (371)
T ss_dssp             EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS--CEEEEEECSSSSEEEEEETT
T ss_pred             EEEEeeccCccccccccccccccccceeeeeeccCccC--cEEEEEeecccccccccccC
Confidence            999998642                  34555666666  89999999999999998753

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.3e-24  Score=180.07  Aligned_cols=186  Identities=18%  Similarity=0.174  Sum_probs=148.6

Q ss_pred             ccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceee
Q 022303          110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSV  185 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~  185 (299)
                      +|...|.+++| +++ +|++|+.||.|++||..+++.+..+..|...+. +++++++..++ ++.++.+++||..+....
T Consensus       119 ~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  198 (388)
T d1erja_         119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS  198 (388)
T ss_dssp             CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccc
Confidence            57778999999 566 999999999999999999999999988766555 99999999988 999999999999987643


Q ss_pred             eec-cCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc-------ccCCceeEEEeCCC-CeEEEEeCCCcE
Q 022303          186 FPS-REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-------MHCAPVTSLSLSED-QLIISGSSLGSI  256 (299)
Q Consensus       186 ~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~~~~-~~l~~~~~dg~i  256 (299)
                      ... .......+.....++..+++++.|+.|++||.+++.....+.       .|...|.+++|+|+ ++|++|+.||.|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i  278 (388)
T d1erja_         199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV  278 (388)
T ss_dssp             EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcE
Confidence            322 222222233344556779999999999999999887765543       57889999999999 999999999999


Q ss_pred             EEEeCCCCce------------EEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          257 AISGLSSDQR------------VATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       257 ~iwd~~~~~~------------~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ++||+++++.            ......|..  .|.+++|+|+|++|++|+..
T Consensus       279 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~sg~~d  329 (388)
T d1erja_         279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKD--FVLSVATTQNDEYILSGSKD  329 (388)
T ss_dssp             EEEEC---------------CEEEEEECCSS--CEEEEEECGGGCEEEEEETT
T ss_pred             EEEeccCCccccccccccccceeeecccccc--eEEEEEECCCCCEEEEEeCC
Confidence            9999976542            344455555  89999999999999999864

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=9e-26  Score=185.02  Aligned_cols=255  Identities=8%  Similarity=-0.038  Sum_probs=181.1

Q ss_pred             hhccCcHHHH--HHHhhccCcc-chhhHHHhhh--hHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccce
Q 022303           23 TIESLNGDII--CMIFSSLGFF-DLVRCSAVCK--SWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFA   97 (299)
Q Consensus        23 ~~~~~~~~~~--~~i~~~~~h~-~~v~~~~~~~--~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (299)
                      .++.|+....  ..+..+.+|. ..|++++|+|  ++++|++                ...|+++++|  ++........
T Consensus        41 ~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~las----------------gs~Dg~i~iW--d~~~~~~~~~  102 (325)
T d1pgua1          41 FVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS----------------GDESGKVIVW--GWTFDKESNS  102 (325)
T ss_dssp             EEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEE----------------EETTSEEEEE--EEEEEGGGTE
T ss_pred             EEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEE----------------EeCCCCEEEe--eecCCcceee
Confidence            3555654332  2355666774 6799999997  4567776                3367888888  3333322222


Q ss_pred             eecCceeeEEeeccccCeeEEEe-cCC-EEEEEe--CCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCE-EE-EEc
Q 022303           98 LEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGV--GDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESK-IV-GLI  170 (299)
Q Consensus        98 l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~-l~-~~~  170 (299)
                      +.  ......+..|.++|.++.| +++ ++++++  .++.+++|+.++++++..+..|...+. ++|+|++.. ++ ++.
T Consensus       103 ~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  180 (325)
T d1pgua1         103 VE--VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD  180 (325)
T ss_dssp             EE--EEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEET
T ss_pred             ee--cccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeec
Confidence            21  1123346789999999999 555 666655  477899999999999999998876554 999999876 44 888


Q ss_pred             CCeEEEEecCCceee--eeccCCcc--ceeeeeccC-CCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeC---
Q 022303          171 GTRICIWRRNGLRSV--FPSREGTF--MKGLCMRYF-DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS---  242 (299)
Q Consensus       171 d~~i~v~d~~~~~~~--~~~~~~~~--~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~---  242 (299)
                      |+.+++||....+..  ...+..+.  ...++++|+ +..+++++.|+.|++||+++++.+..+..|..++..+.|+   
T Consensus       181 d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~  260 (325)
T d1pgua1         181 DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW  260 (325)
T ss_dssp             TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEE
T ss_pred             ccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeec
Confidence            999999999876532  22222222  224578886 4568999999999999999999999998887776555544   


Q ss_pred             CC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCC-CCeEEeeecc
Q 022303          243 ED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQF-LHMLFFLCFL  297 (299)
Q Consensus       243 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~s~s~~  297 (299)
                      |+ ++|++++.|+.|+|||+++++++..+..+.....+..+++.+. +.+|++||.-
T Consensus       261 ~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d  317 (325)
T d1pgua1         261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD  317 (325)
T ss_dssp             SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT
T ss_pred             cCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECC
Confidence            45 8999999999999999999999998877665223444444433 3477888754

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=7.8e-26  Score=184.61  Aligned_cols=232  Identities=12%  Similarity=0.064  Sum_probs=161.0

Q ss_pred             hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCee
Q 022303           37 SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVD  116 (299)
Q Consensus        37 ~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~  116 (299)
                      -..+|.+.|++++|+|++++||+                ...|+++++|..  .....       ...+....+|.++|.
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s----------------~s~Dg~v~iwd~--~~~~~-------~~~~~~~~~h~~~V~   60 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLI----------------TSWDGSLTVYKF--DIQAK-------NVDLLQSLRYKHPLL   60 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEE----------------EETTSEEEEEEE--ETTTT-------EEEEEEEEECSSCEE
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEE----------------EECCCeEEEEEc--cCCCc-------ceEEEEecCCCCCEE
Confidence            34589999999999999999997                346888999932  22111       112233357999999


Q ss_pred             EEEe-cC-C-EEEEEeCCCcEEEEecCCceeEEEecCCCcee--EEEEecCCCEEE-EEcCCeEEEEecCCce---eeee
Q 022303          117 QCRM-KR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS--LVDFDFDESKIV-GLIGTRICIWRRNGLR---SVFP  187 (299)
Q Consensus       117 ~~~~-~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~-~~~d~~i~v~d~~~~~---~~~~  187 (299)
                      +++| ++ + +|++|+.||.|++|+............+....  ...+.++...++ ++.++.+++||++...   ....
T Consensus        61 ~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~  140 (342)
T d1yfqa_          61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVK  140 (342)
T ss_dssp             EEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred             EEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeec
Confidence            9999 44 4 89999999999999999887776666443332  355666777777 9999999999986432   1111


Q ss_pred             cc----CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceee------------------------------------
Q 022303          188 SR----EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ------------------------------------  227 (299)
Q Consensus       188 ~~----~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~------------------------------------  227 (299)
                      ..    ........++.+.+..+++++.|+.|++||++..+...                                    
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v  220 (342)
T d1yfqa_         141 NLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAV  220 (342)
T ss_dssp             ESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEE
T ss_pred             ccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEE
Confidence            00    01111123444555556666666666666654321000                                    


Q ss_pred             -------------------------eccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEE
Q 022303          228 -------------------------IIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIIC  281 (299)
Q Consensus       228 -------------------------~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~  281 (299)
                                               ....|...+++++|+|+ .+|++|+.||.|++||+++++++.++..++   .+..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~---~~~~  297 (342)
T d1yfqa_         221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---EDSV  297 (342)
T ss_dssp             EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS---SSEE
T ss_pred             EEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC---CCEE
Confidence                                     00124456889999999 999999999999999999999998886554   4567


Q ss_pred             EEccCCCCeEEeeec
Q 022303          282 LMYPQFLHMLFFLCF  296 (299)
Q Consensus       282 ~~~s~~g~~l~s~s~  296 (299)
                      ++|+|+|++|++|+-
T Consensus       298 ~~~s~~~~~l~~a~s  312 (342)
T d1yfqa_         298 VKIACSDNILCLATS  312 (342)
T ss_dssp             EEEEECSSEEEEEEE
T ss_pred             EEEEeCCCEEEEEEc
Confidence            788899999998764

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=7e-27  Score=192.23  Aligned_cols=273  Identities=12%  Similarity=0.119  Sum_probs=188.7

Q ss_pred             CCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhc---CCC-C-------
Q 022303           13 PKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLH---GFS-N-------   76 (299)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~---~~~-~-------   76 (299)
                      +....+..+.++++|+.+..+.+.++.+|.+.|.+++|+++. .+++     ++.+|+.......   ... .       
T Consensus        24 ~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  102 (355)
T d1nexb2          24 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI  102 (355)
T ss_dssp             TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-EEEEEeccccccccccccccccccccccccccccccc
Confidence            445566778899999999988888899999999999999864 5655     3556655222211   000 0       


Q ss_pred             ------------CCCchhhhhhhhhhhccccceee-------------cCceeeEEeeccccCeeEEEecCCEEEEEeCC
Q 022303           77 ------------TSGSSMRLHLEELAMKHHRFALE-------------EGRIDIDQWKAHSVGVDQCRMKRGLILTGVGD  131 (299)
Q Consensus        77 ------------~~d~~~~~~~~~~~~~~~~~~l~-------------~g~~~~~~~~~h~~~i~~~~~~~~~l~s~~~d  131 (299)
                                  ..|+.+++|.  +..........             .....+.....|...+......+++++++..|
T Consensus       103 ~~~~~~~~~~~~~~d~~i~iw~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d  180 (355)
T d1nexb2         103 VEYKNIKYIVTGSRDNTLHVWK--LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD  180 (355)
T ss_dssp             EEETTEEEEEEEETTSEEEEEE--CCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETT
T ss_pred             ccccccceeeeecCCCcEEEEE--ccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeeccc
Confidence                        0444455542  11111000000             00011333455666666665566699999999


Q ss_pred             CcEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEecCCcee--eeeccCCccceeeeeccCCCeEE
Q 022303          132 KVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWRRNGLRS--VFPSREGTFMKGLCMRYFDPEAV  207 (299)
Q Consensus       132 g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~  207 (299)
                      +.|++||+.+++.+.....+.... .+.+++++..++ ++.|+.|++||..++..  .+..+...   +.++.+.+..++
T Consensus       181 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~---v~~~~~~~~~l~  257 (355)
T d1nexb2         181 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL---VGLLRLSDKFLV  257 (355)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSC---CCEEEECSSEEE
T ss_pred             ceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccc---ccccccccceee
Confidence            999999999999998888665444 599999999998 99999999999998753  33444443   446667788899


Q ss_pred             EecCCCcEEEEEcCCcceeeeccccCCceeEEE-eCCC-CeEEEEeCCCcEEEEeCCCCceEEE-eeccCCCCcEEEEEc
Q 022303          208 VGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS-LSED-QLIISGSSLGSIAISGLSSDQRVAT-LRSTDCTGHIICLMY  284 (299)
Q Consensus       208 s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~-~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~i~~~~~  284 (299)
                      +|+.||.|++||++++....  ..|...+.++. ++++ .++++ +.|+.|++||+++++++.. +.+|..  +|++++|
T Consensus       258 ~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~-g~d~~i~vwd~~tg~~~~~~~~~~~~--~V~~v~~  332 (355)
T d1nexb2         258 SAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDNILVS-GSENQFNIYNLRSGKLVHANILKDAD--QIWSVNF  332 (355)
T ss_dssp             EECTTSEEEEEETTTCCEEE--EEECTTCCCCCEEEECSSEEEE-EETTEEEEEETTTCCBCCSCTTTTCS--EEEEEEE
T ss_pred             eeecccccccccccccceec--ccccCCceEEEEEcCCCCEEEE-EeCCEEEEEECCCCCEEEEEecCCCC--CEEEEEE
Confidence            99999999999999776543  34555566554 4566 55555 5589999999999998854 556666  8999999


Q ss_pred             cCCCCeEEeeecc
Q 022303          285 PQFLHMLFFLCFL  297 (299)
Q Consensus       285 s~~g~~l~s~s~~  297 (299)
                      +|+ .++++++.-
T Consensus       333 ~~~-~~~~~~s~d  344 (355)
T d1nexb2         333 KGK-TLVAAVEKD  344 (355)
T ss_dssp             ETT-EEEEEEESS
T ss_pred             cCC-eEEEEEECC
Confidence            987 466676643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.5e-24  Score=178.09  Aligned_cols=227  Identities=20%  Similarity=0.203  Sum_probs=177.2

Q ss_pred             hccCccchh-hHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCe
Q 022303           37 SSLGFFDLV-RCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGV  115 (299)
Q Consensus        37 ~~~~h~~~v-~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i  115 (299)
                      ++.+|.+.| +|+  ++++++|++                ...|+.+++|..  .          ....++++++|.++|
T Consensus         7 tL~GH~~~vitc~--~~~~~~l~t----------------gs~Dg~i~vWd~--~----------~~~~~~~l~~H~~~V   56 (355)
T d1nexb2           7 TLRGHMTSVITCL--QFEDNYVIT----------------GADDKMIRVYDS--I----------NKKFLLQLSGHDGGV   56 (355)
T ss_dssp             EEECCSSSCEEEE--EEETTEEEE----------------EETTTEEEEEET--T----------TTEEEEEEECCSSCE
T ss_pred             EECCcCCCcEEEE--EECCCEEEE----------------EeCCCeEEEEEC--C----------CCcEEEEEECCCCCE
Confidence            466898875 554  556788887                346788899932  2          123456779999999


Q ss_pred             eEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCCcee---EEEEecCCCEEE-EEcCCeEEEEecCCceeeee---
Q 022303          116 DQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS---LVDFDFDESKIV-GLIGTRICIWRRNGLRSVFP---  187 (299)
Q Consensus       116 ~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~---  187 (299)
                      ++++| ++++|++|+.|++|++|+....+............   ...+.+++..++ ++.|+.|++||+.+......   
T Consensus        57 ~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~  136 (355)
T d1nexb2          57 WALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGE  136 (355)
T ss_dssp             EEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC---------
T ss_pred             EEEEEcCCCEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccc
Confidence            99999 55599999999999999999988877666443322   266778888888 99999999999976431110   


Q ss_pred             -------------------ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeE
Q 022303          188 -------------------SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI  247 (299)
Q Consensus       188 -------------------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l  247 (299)
                                         ....+...+.+..+++..++++..|+.+++||+++++.+.....+...+.++.++|+ .++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (355)
T d1nexb2         137 EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC  216 (355)
T ss_dssp             --CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEE
T ss_pred             cceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceee
Confidence                               001111223456667788999999999999999999998888888899999999998 999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          248 ISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       248 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ++++.|+.|++||+++++++..+.+|..  .|.+++|+  +++|++|+.-
T Consensus       217 ~~~~~d~~i~i~d~~~~~~~~~~~~h~~--~v~~~~~~--~~~l~~~~~d  262 (355)
T d1nexb2         217 ISASMDTTIRIWDLENGELMYTLQGHTA--LVGLLRLS--DKFLVSAAAD  262 (355)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSS--CCCEEEEC--SSEEEEECTT
T ss_pred             ecccccceEEeeeccccccccccccccc--cccccccc--cceeeeeecc
Confidence            9999999999999999999999999988  89999986  4688888753

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.8e-23  Score=168.75  Aligned_cols=188  Identities=16%  Similarity=0.297  Sum_probs=144.8

Q ss_pred             eEEeeccccCeeE-EEecCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCC
Q 022303          105 IDQWKAHSVGVDQ-CRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNG  181 (299)
Q Consensus       105 ~~~~~~h~~~i~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~  181 (299)
                      .++++||++.|.+ +.+.+++|+||+.||+|++||+.+++++.++.+|...+. ++|+++  +++ ++.|+.+++|+...
T Consensus         9 ~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~   86 (342)
T d2ovrb2           9 PKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAET   86 (342)
T ss_dssp             CEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTT
T ss_pred             CEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccccc
Confidence            5678999999854 566666999999999999999999999999998876554 888864  676 88999999998764


Q ss_pred             ceee----------------------------------------------------------------------------
Q 022303          182 LRSV----------------------------------------------------------------------------  185 (299)
Q Consensus       182 ~~~~----------------------------------------------------------------------------  185 (299)
                      ....                                                                            
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~  166 (342)
T d2ovrb2          87 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET  166 (342)
T ss_dssp             TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG
T ss_pred             ccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeeccc
Confidence            1100                                                                            


Q ss_pred             ---eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022303          186 ---FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLS  262 (299)
Q Consensus       186 ---~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~  262 (299)
                         .....++.....++.+++..+++++.|+.|++||++.++.+..+..|...+.++.+++ ++|++++.|+.|++||+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~s~d~~i~iwd~~  245 (342)
T d2ovrb2         167 ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWDIK  245 (342)
T ss_dssp             TEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET-TEEEEEETTSCEEEEETT
T ss_pred             ceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC-CEEEEEcCCCEEEEEecc
Confidence               0000111112344556677799999999999999999999999999999999988866 489999999999999999


Q ss_pred             CCceEEEeeccCCC-CcEEEEEccCCCCeEEeeecc
Q 022303          263 SDQRVATLRSTDCT-GHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       263 ~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ..+....+..+... ..+.++.+  +++++++|+.-
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~D  279 (342)
T d2ovrb2         246 TGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDD  279 (342)
T ss_dssp             TCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETT
T ss_pred             cccccccccccceeeeceeeccc--CCCeeEEEcCC
Confidence            99888888754331 25666666  55688888754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=4e-24  Score=171.64  Aligned_cols=220  Identities=12%  Similarity=0.088  Sum_probs=155.5

Q ss_pred             HhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccC
Q 022303           35 IFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVG  114 (299)
Q Consensus        35 i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~  114 (299)
                      +..+.+|.+.|+|++|+|    |++                ...|+++++|..  ..               ..++|...
T Consensus         6 i~~l~gH~~~I~~l~~s~----l~s----------------gs~Dg~v~~Wd~--~~---------------~~~~h~~~   48 (287)
T d1pgua2           6 LKTISGHNKGITALTVNP----LIS----------------GSYDGRIMEWSS--SS---------------MHQDHSNL   48 (287)
T ss_dssp             EEEECCCSSCEEEEETTT----TEE----------------EETTSCEEETTT--TE---------------EECCCCSC
T ss_pred             eEEECCCCCceEEEEECc----EEE----------------EeCCCeEEEEEC--CC---------------CCCCCCCC
Confidence            446779999999999987    666                235666677632  11               01356666


Q ss_pred             eeEEEecC-CEEEEEeCCCcEEEEecC----------------------------------CceeEEEecCCCceeEEEE
Q 022303          115 VDQCRMKR-GLILTGVGDKVMRLWSLE----------------------------------GYKCVEEYSLPNAASLVDF  159 (299)
Q Consensus       115 i~~~~~~~-~~l~s~~~dg~i~iwd~~----------------------------------~~~~~~~~~~~~~~~~~~~  159 (299)
                      |.++.+.+ +.+++++.|+++++|++.                                  +++.+..+..+..  ..++
T Consensus        49 V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  126 (287)
T d1pgua2          49 IVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP--GSAV  126 (287)
T ss_dssp             EEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSC--EEEE
T ss_pred             EEEEEecCCCeEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccce--eeee
Confidence            66666633 366666666666666543                                  3333333333322  2456


Q ss_pred             ecCCCEEE-EEcCC-eEEEEecCCceeeeec---cCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceee-eccccC
Q 022303          160 DFDESKIV-GLIGT-RICIWRRNGLRSVFPS---REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ-IIRMHC  233 (299)
Q Consensus       160 ~~~~~~l~-~~~d~-~i~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~  233 (299)
                      ++++..++ ++.++ .+++|++.+.......   +.+. ...+++++++.+|++|+.||.|++||+.+++... .+..|.
T Consensus       127 ~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~  205 (287)
T d1pgua2         127 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK-PSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRT  205 (287)
T ss_dssp             EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCS
T ss_pred             eccCcceeeeccccceeeeeeccccceeeeeeeccCCc-eeEEEeccCccccccccccccccceeecccccccccccccc
Confidence            67777777 66664 7999999765433322   2233 3356899999999999999999999999887654 456889


Q ss_pred             CceeEEEeCCC-----------CeEEEEeCCCcEEEEeCCC-CceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          234 APVTSLSLSED-----------QLIISGSSLGSIAISGLSS-DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       234 ~~i~~~~~~~~-----------~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      .+|.+++|+|.           .++++|+.|++|++||+++ ++.+..+.+|..  .|++++|+|++. |++++.-
T Consensus       206 ~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~--~V~~v~~~~~~~-l~s~g~D  278 (287)
T d1pgua2         206 SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD--GVNNLLWETPST-LVSSGAD  278 (287)
T ss_dssp             SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT--CEEEEEEEETTE-EEEEETT
T ss_pred             cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCC--CeEEEEECCCCE-EEEEECC
Confidence            99999999863           5899999999999999977 566777778887  899999999875 6666643

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.3e-24  Score=182.70  Aligned_cols=184  Identities=12%  Similarity=0.106  Sum_probs=140.2

Q ss_pred             ccccCeeEEEe-cC-----C-EEEEEeCCCcEEEEecCCce---------------eEEEec---C-CCceeEEEEecCC
Q 022303          110 AHSVGVDQCRM-KR-----G-LILTGVGDKVMRLWSLEGYK---------------CVEEYS---L-PNAASLVDFDFDE  163 (299)
Q Consensus       110 ~h~~~i~~~~~-~~-----~-~l~s~~~dg~i~iwd~~~~~---------------~~~~~~---~-~~~~~~~~~~~~~  163 (299)
                      .+...++.+.+ ++     + ++++++.||++++|++....               ......   . ...+.+++|+|++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg  196 (393)
T d1sq9a_         117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG  196 (393)
T ss_dssp             GGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS
T ss_pred             cCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC
Confidence            35556677666 21     2 89999999999999974210               111111   1 2234569999998


Q ss_pred             CEEE-EEcCCeEEEEecCCceeee--------eccCCccceeeeeccCCCeEEEecCCCc---EEEEEcCCcceeeecc-
Q 022303          164 SKIV-GLIGTRICIWRRNGLRSVF--------PSREGTFMKGLCMRYFDPEAVVGCEDGT---ARVFDMYSRKCSQIIR-  230 (299)
Q Consensus       164 ~~l~-~~~d~~i~v~d~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~s~~~d~~---i~iwd~~~~~~~~~~~-  230 (299)
                       +++ ++.|+.|++||+.+.+...        ..|...+. .++|+|++..|++|+.|+.   |++||+++++.+..+. 
T Consensus       197 -~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~  274 (393)
T d1sq9a_         197 -LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR-SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSV  274 (393)
T ss_dssp             -EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE-EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECB
T ss_pred             -EEEEEeCCCcEEEEeecccccccccccccccccccceEE-EcccccccceeeeecCCCCcceeeecccccceeeeeecc
Confidence             666 9999999999999875322        22333333 4689999999999998874   8999999988777653 


Q ss_pred             ------------ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEE----EEEccCCCCeEEe
Q 022303          231 ------------MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHII----CLMYPQFLHMLFF  293 (299)
Q Consensus       231 ------------~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~----~~~~s~~g~~l~s  293 (299)
                                  +|...|++++|+|+ ++|++|+.|++|++||++++++++++++|..  .|.    .++|+|++..+++
T Consensus       275 ~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~--~v~~~~~~~~~~~~~~~~~~  352 (393)
T d1sq9a_         275 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD--DIEIEEDILAVDEHGDSLAE  352 (393)
T ss_dssp             C--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGG--GCSSGGGCCCBCTTSCBCSS
T ss_pred             ccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCC--cccCCccEEEECCCCCEEEE
Confidence                        68999999999999 9999999999999999999999999999976  554    4788888888776


Q ss_pred             eecc
Q 022303          294 LCFL  297 (299)
Q Consensus       294 ~s~~  297 (299)
                      ++.+
T Consensus       353 ~~~~  356 (393)
T d1sq9a_         353 PGVF  356 (393)
T ss_dssp             CCEE
T ss_pred             cccc
Confidence            6543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3.1e-23  Score=174.09  Aligned_cols=189  Identities=12%  Similarity=0.182  Sum_probs=134.5

Q ss_pred             EEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCcee-------EEEecC----------------------------
Q 022303          106 DQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKC-------VEEYSL----------------------------  150 (299)
Q Consensus       106 ~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~----------------------------  150 (299)
                      ...++|.+.|.++++.+++++|++.|++|++||..+.+.       ......                            
T Consensus         8 ~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~   87 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   87 (393)
T ss_dssp             EESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             ecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence            345899999999998777999999999999999653210       000000                            


Q ss_pred             -------------------------------CCceeEEEEecCC-----CEEE-EEcCCeEEEEecCCce----------
Q 022303          151 -------------------------------PNAASLVDFDFDE-----SKIV-GLIGTRICIWRRNGLR----------  183 (299)
Q Consensus       151 -------------------------------~~~~~~~~~~~~~-----~~l~-~~~d~~i~v~d~~~~~----------  183 (299)
                                                     ......+++.++.     .+++ ++.||.+++|++....          
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~  167 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW  167 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence                                           0011123343332     3455 7778888888874321          


Q ss_pred             -------eeeeccCC--ccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeec------cccCCceeEEEeCCC-CeE
Q 022303          184 -------SVFPSREG--TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII------RMHCAPVTSLSLSED-QLI  247 (299)
Q Consensus       184 -------~~~~~~~~--~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------~~~~~~i~~~~~~~~-~~l  247 (299)
                             ........  .....+++++++ .+++|+.|+.|++||+.+++.+..+      .+|..+|.+++|+|+ ++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  246 (393)
T d1sq9a_         168 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL  246 (393)
T ss_dssp             CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred             ccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccccee
Confidence                   00000111  111234666655 7899999999999999998876544      368899999999999 999


Q ss_pred             EEEeCCCc---EEEEeCCCCceEEEee-------------ccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          248 ISGSSLGS---IAISGLSSDQRVATLR-------------STDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       248 ~~~~~dg~---i~iwd~~~~~~~~~~~-------------~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ++|+.|++   |++||+++++++..+.             +|..  .|++++|+|+|++|++||.-
T Consensus       247 ~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~--~V~~l~fspd~~~l~S~s~D  310 (393)
T d1sq9a_         247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS--WVMSLSFNDSGETLCSAGWD  310 (393)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS--CEEEEEECSSSSEEEEEETT
T ss_pred             eeecCCCCcceeeecccccceeeeeeccccccccceeeeecccC--ceeeeccCCCCCeeEEECCC
Confidence            99999875   8999999999888875             5666  89999999999999999864

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3e-23  Score=169.82  Aligned_cols=190  Identities=12%  Similarity=0.082  Sum_probs=145.3

Q ss_pred             eEEeeccc-cCeeEEEe-c--CC-EEEEEeCCCcEEEEecCCceeE--------EEecCCCc-eeEEEEecCCCEEE-EE
Q 022303          105 IDQWKAHS-VGVDQCRM-K--RG-LILTGVGDKVMRLWSLEGYKCV--------EEYSLPNA-ASLVDFDFDESKIV-GL  169 (299)
Q Consensus       105 ~~~~~~h~-~~i~~~~~-~--~~-~l~s~~~dg~i~iwd~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~l~-~~  169 (299)
                      +..+.+|. ..|++++| |  ++ +|++|+.||+|++||+..++..        ..+..+.. +..++|+++++.++ ++
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  134 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  134 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence            44556774 67999999 3  33 8999999999999998754321        22344444 45599999999987 54


Q ss_pred             c--CCeEEEEecCCcee--eeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeec---cccCCceeEEEe
Q 022303          170 I--GTRICIWRRNGLRS--VFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQII---RMHCAPVTSLSL  241 (299)
Q Consensus       170 ~--d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~i~~~~~  241 (299)
                      .  ++.+.+|+..++..  .+..|...+. .+++.+.++. +++++.|+.+++||..+.+....+   ..|...|.+++|
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~  213 (325)
T d1pgua1         135 EGRDNFGVFISWDSGNSLGEVSGHSQRIN-ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF  213 (325)
T ss_dssp             CCSSCSEEEEETTTCCEEEECCSCSSCEE-EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE
T ss_pred             ccccceEEEEeecccccceeeeecccccc-cccccccccceEEEeecccccccccccccccceecccccCCCCccEEeee
Confidence            3  56799999887653  3444555444 3578888876 778999999999999887765544   366788999999


Q ss_pred             CCC--CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEcc---CCCCeEEeeecc
Q 022303          242 SED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYP---QFLHMLFFLCFL  297 (299)
Q Consensus       242 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s---~~g~~l~s~s~~  297 (299)
                      +|+  .++++++.|+.|++||+++++.+.++..|..  ++.++.|+   |+|++|++++.-
T Consensus       214 ~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~--~v~~~~~s~~~~dg~~l~s~s~D  272 (325)
T d1pgua1         214 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE--PVQGGIFALSWLDSQKFATVGAD  272 (325)
T ss_dssp             CSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB--CCCSCEEEEEESSSSEEEEEETT
T ss_pred             ccccceeccccccccceeeeeecccccccccccccc--ccccceeeeeccCCCEEEEEeCC
Confidence            996  7899999999999999999999999998876  56555554   689999998853

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-23  Score=168.12  Aligned_cols=222  Identities=20%  Similarity=0.231  Sum_probs=162.8

Q ss_pred             ccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeE
Q 022303           38 SLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQ  117 (299)
Q Consensus        38 ~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~  117 (299)
                      +.+|...|+|++  +++++|++                ...|+++++|..  .          ....++++++|.++|++
T Consensus        11 ~~~~~~~V~c~~--~d~~~l~s----------------gs~Dg~i~vWd~--~----------~~~~~~~l~~H~~~V~~   60 (293)
T d1p22a2          11 RSETSKGVYCLQ--YDDQKIVS----------------GLRDNTIKIWDK--N----------TLECKRILTGHTGSVLC   60 (293)
T ss_dssp             CCSSCCCEEEEE--CCSSEEEE----------------EESSSCEEEEES--S----------SCCEEEEECCCSSCEEE
T ss_pred             cCCCCCCEEEEE--EcCCEEEE----------------EeCCCeEEEEEC--C----------CCcEEEEEecCCCCEee
Confidence            446788888865  46788887                447888999932  1          22345677999999999


Q ss_pred             EEecCCEEEEEeCCCcEEEEecCCceeEEEecC-------------------------------------------CCce
Q 022303          118 CRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSL-------------------------------------------PNAA  154 (299)
Q Consensus       118 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------------------------------------~~~~  154 (299)
                      +.|.+.+|++|+.|+.|++|++..+........                                           +...
T Consensus        61 v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (293)
T d1p22a2          61 LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA  140 (293)
T ss_dssp             EECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC
T ss_pred             eecccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccc
Confidence            999767999999999999999987654433321                                           1111


Q ss_pred             eEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccC
Q 022303          155 SLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC  233 (299)
Q Consensus       155 ~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  233 (299)
                      + ....+....++ ++.|+.+++||.++.+..... .+....+..+.+.+..+++++.|+.|++||+++.+.+..+..+.
T Consensus       141 v-~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  218 (293)
T d1p22a2         141 V-NVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE  218 (293)
T ss_dssp             E-EEEEEETTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             c-ccceecccccccccCCCceeeecCCCCcEEEEE-cccccccccccCCCCeEEEecCCCEEEEEecccceeeeeecccc
Confidence            1 11222334455 778888888888876533221 22223345667778889999999999999999999999888888


Q ss_pred             CceeEEEeCCC-CeEEEEeCCCcEEEEeCCC---------CceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          234 APVTSLSLSED-QLIISGSSLGSIAISGLSS---------DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       234 ~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ..+..+.  ++ .+|++|+.||.|++||+.+         ..++..+.+|..  +|++++|  ++++|++||.-
T Consensus       219 ~~v~~~~--~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~--~V~~v~~--d~~~l~s~s~D  286 (293)
T d1p22a2         219 ELVRCIR--FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQIVSSSHD  286 (293)
T ss_dssp             SCEEEEE--CCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSCEEECCSS
T ss_pred             eeeeecc--ccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCC--CEEEEEE--cCCEEEEEecC
Confidence            8887654  45 7899999999999999753         346788888988  8999999  46789998864

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.7e-22  Score=157.72  Aligned_cols=188  Identities=17%  Similarity=0.236  Sum_probs=146.7

Q ss_pred             eEEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCce
Q 022303          105 IDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR  183 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~  183 (299)
                      ++...+|...|+|+.+.+++|+||+.||+|++||+.+++++.++.+|...+. ++++++++|+ ++.|+.|++|++....
T Consensus         8 i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~-~v~~~~~~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2           8 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL-CLQYDERVIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             EECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE-EEECCSSEEEEEETTSCEEEEESSSCC
T ss_pred             EeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEe-eeecccceeeccccccccccccccccc
Confidence            4445678899999988666999999999999999999999999998876553 3345778888 9999999999987632


Q ss_pred             eeeec------------------------------------------cCCccceeeeeccCCCeEEEecCCCcEEEEEcC
Q 022303          184 SVFPS------------------------------------------REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY  221 (299)
Q Consensus       184 ~~~~~------------------------------------------~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  221 (299)
                      .....                                          ...+...+.+..+....+++++.|+.+++||.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~  166 (293)
T d1p22a2          87 MLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS  166 (293)
T ss_dssp             EEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred             ccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCC
Confidence            10000                                          001111123344455567889999999999999


Q ss_pred             CcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          222 SRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       222 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      +++.+..+.++...+..+.+++ .++++++.||.|++||+++.+.+..+..+..  .+..  +++++.+|++|+..+
T Consensus       167 ~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~--~~~~~~~l~sg~~dg  238 (293)
T d1p22a2         167 TCEFVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRC--IRFDNKRIVSGAYDG  238 (293)
T ss_dssp             TCCEEEEEECCSSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEE--EECCSSEEEEEETTS
T ss_pred             CCcEEEEEcccccccccccCCC-CeEEEecCCCEEEEEecccceeeeeecccce--eeee--ccccceEEEEEcCCC
Confidence            9999999988888888887754 5899999999999999999999999988876  6765  455788999988643

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2.4e-21  Score=155.20  Aligned_cols=185  Identities=15%  Similarity=0.132  Sum_probs=135.7

Q ss_pred             eeEEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecCCCc-eeEEEEecCCCEEEEEcCCeEEEEecCCc
Q 022303          104 DIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIVGLIGTRICIWRRNGL  182 (299)
Q Consensus       104 ~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~d~~i~v~d~~~~  182 (299)
                      .+++++||.++|++++|..  |+||+.||+|++||+.++.     +.|.. +..++++++..++.++.|+++++|++...
T Consensus         5 ~i~~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~   77 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH   77 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT--TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEE
T ss_pred             eeEEECCCCCceEEEEECc--EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCCeEEEEeecccccccccccc
Confidence            4788999999999999954  9999999999999988653     34544 34477777665544888888888876432


Q ss_pred             e-------------------------eeeeccCCc-------cceeeeeccCCCeEEEecCC-CcEEEEEcCCcceeeec
Q 022303          183 R-------------------------SVFPSREGT-------FMKGLCMRYFDPEAVVGCED-GTARVFDMYSRKCSQII  229 (299)
Q Consensus       183 ~-------------------------~~~~~~~~~-------~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~  229 (299)
                      .                         ..+....+.       .....++++.+..+++++.+ +.+++|++...+....+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~  157 (287)
T d1pgua2          78 EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL  157 (287)
T ss_dssp             ECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC
T ss_pred             ccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceeeee
Confidence            1                         000000000       01134566777777766665 57999999876665555


Q ss_pred             c-ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEE-eeccCCCCcEEEEEccCC----------CCeEEeeec
Q 022303          230 R-MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVAT-LRSTDCTGHIICLMYPQF----------LHMLFFLCF  296 (299)
Q Consensus       230 ~-~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~i~~~~~s~~----------g~~l~s~s~  296 (299)
                      . .+..++++++|+|+ .+|++|+.||.|++||+.+++.... +..|..  +|.+++|+|.          +.+|++||.
T Consensus       158 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~~~~~~~~~~l~sgs~  235 (287)
T d1pgua2         158 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTS--KINAISWKPAEKGANEEEIEEDLVATGSL  235 (287)
T ss_dssp             SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSS--CEEEEEECCCC------CCSCCEEEEEET
T ss_pred             eeccCCceeEEEeccCccccccccccccccceeeccccccccccccccc--ccceeeecccccccccccCCCCeeEeecC
Confidence            4 57788999999999 9999999999999999998876543 556666  8999999875          467888875


Q ss_pred             c
Q 022303          297 L  297 (299)
Q Consensus       297 ~  297 (299)
                      -
T Consensus       236 D  236 (287)
T d1pgua2         236 D  236 (287)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=5.7e-20  Score=149.35  Aligned_cols=159  Identities=13%  Similarity=0.096  Sum_probs=109.5

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCcee----EEEecCCCceeEEEEecCCC-EEE-EEcCCeEEE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKC----VEEYSLPNAASLVDFDFDES-KIV-GLIGTRICI  176 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~-~l~-~~~d~~i~v  176 (299)
                      ++..++|.+.|++++| |++ +|++|+.||+|+|||+.++..    ...+.+...+.+++|++++. +++ ++.|+.|++
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~   83 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee
Confidence            4566899999999999 666 999999999999999876543    23333445566799998755 566 899999999


Q ss_pred             EecCCceeee--eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeec----cc--cCCceeEEEeCCC-CeE
Q 022303          177 WRRNGLRSVF--PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII----RM--HCAPVTSLSLSED-QLI  247 (299)
Q Consensus       177 ~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~--~~~~i~~~~~~~~-~~l  247 (299)
                      |+........  ..............+....+++++.++.+++||++++......    ..  .........+.+. ..+
T Consensus        84 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (342)
T d1yfqa_          84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL  163 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred             eecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence            9998765322  2222233334455666777999999999999998764432221    11  1222334444555 677


Q ss_pred             EEEeCCCcEEEEeCCC
Q 022303          248 ISGSSLGSIAISGLSS  263 (299)
Q Consensus       248 ~~~~~dg~i~iwd~~~  263 (299)
                      ++++.|+.|++||++.
T Consensus       164 ~~~~~d~~i~~~~~~~  179 (342)
T d1yfqa_         164 IVGMNNSQVQWFRLPL  179 (342)
T ss_dssp             EEEESTTEEEEEESSC
T ss_pred             eeecCCCcEEEEeccc
Confidence            7777788888887653

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.79  E-value=2.8e-18  Score=140.94  Aligned_cols=172  Identities=16%  Similarity=0.135  Sum_probs=134.8

Q ss_pred             Ee-c-CC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCC--eEEEEecCCcee-eeeccCC
Q 022303          119 RM-K-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGT--RICIWRRNGLRS-VFPSREG  191 (299)
Q Consensus       119 ~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~--~i~v~d~~~~~~-~~~~~~~  191 (299)
                      .| | ++ ++++++ +|.|++||..++..++ +.+...+..++|+||++.|+ ++.+.  .|++||.++++. .+..+.+
T Consensus         9 ~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~   86 (360)
T d1k32a3           9 DFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLG   86 (360)
T ss_dssp             EEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCC
T ss_pred             cccCCCCCEEEEEE-CCeEEEEECCCCcEEE-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCc
Confidence            45 5 66 666665 5799999999887765 34444555699999999988 55543  799999998753 3344444


Q ss_pred             ccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEe----------CCCcEEEEe
Q 022303          192 TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS----------SLGSIAISG  260 (299)
Q Consensus       192 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~----------~dg~i~iwd  260 (299)
                      .. ..++|+|++.++++++.++.+++|+..+++....+..+...+.+++|+|+ ++|+.++          .++.+++||
T Consensus        87 ~v-~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d  165 (360)
T d1k32a3          87 NV-FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD  165 (360)
T ss_dssp             SE-EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred             eE-Eeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeec
Confidence            43 35789999999999999999999999999988888888899999999999 8887543          455699999


Q ss_pred             CCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          261 LSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      +.+++...... +..  .+..++|+|+|++|++++.
T Consensus       166 ~~~~~~~~~~~-~~~--~~~~~~~spdg~~l~~~s~  198 (360)
T d1k32a3         166 MEGRKIFAATT-ENS--HDYAPAFDADSKNLYYLSY  198 (360)
T ss_dssp             TTTTEEEECSC-SSS--BEEEEEECTTSCEEEEEES
T ss_pred             cccCceeeecc-ccc--ccccccccCCCCEEEEEeC
Confidence            98877654443 444  7899999999999998874

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=6.9e-17  Score=136.65  Aligned_cols=173  Identities=9%  Similarity=-0.084  Sum_probs=134.0

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCce--eeee--ccCCccce--e
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR--SVFP--SREGTFMK--G  196 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~--~~~~~~~~--~  196 (299)
                      ++++.+.||+|.+||..+++++..+..+..+..++|+|||++++ ++.|+.+.+||+.+.+  ....  ...++...  .
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s  113 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS  113 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence            56899999999999999999999999887777799999999999 8899999999998754  2222  11122111  2


Q ss_pred             eeeccCCCeE-EEecCCCcEEEEEcCCcceeeeccc-----------cCCceeEEEeCCC-C-eEEEEeCCCcEEEEeCC
Q 022303          197 LCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRM-----------HCAPVTSLSLSED-Q-LIISGSSLGSIAISGLS  262 (299)
Q Consensus       197 ~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~-----------~~~~i~~~~~~~~-~-~l~~~~~dg~i~iwd~~  262 (299)
                      ..++++++++ +++..++.+++||..+++.+..+..           +......+.++|+ . ++++...++.|.+||..
T Consensus       114 ~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~  193 (432)
T d1qksa2         114 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT  193 (432)
T ss_dssp             CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred             cccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEcc
Confidence            3567789885 6788899999999999988776643           2345567888887 4 56677788999999998


Q ss_pred             CCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          263 SDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       263 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +++.......+.+. .+..++|+|+|+++++++..
T Consensus       194 ~~~~~~~~~i~~g~-~~~~~~~spdg~~~~va~~~  227 (432)
T d1qksa2         194 DLNNLKTTEISAER-FLHDGGLDGSHRYFITAANA  227 (432)
T ss_dssp             CSSEEEEEEEECCS-SEEEEEECTTSCEEEEEEGG
T ss_pred             CCCcceEEEEcccC-ccccceECCCCCEEEEeccc
Confidence            87765544433332 78999999999999988754

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.74  E-value=3.4e-17  Score=131.10  Aligned_cols=241  Identities=7%  Similarity=0.038  Sum_probs=169.8

Q ss_pred             CcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHh-hhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcccccee
Q 022303           20 PRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAII-NRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFAL   98 (299)
Q Consensus        20 ~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~-~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l   98 (299)
                      .+.++..|+.++.+.+.++ ...+....++|+|++++|+ +                ...+..+++|  ++...      
T Consensus        10 ~~~~v~v~D~~t~~~~~~i-~~g~~p~~va~spdG~~l~v~----------------~~~~~~i~v~--d~~t~------   64 (301)
T d1l0qa2          10 ESDNISVIDVTSNKVTATI-PVGSNPMGAVISPDGTKVYVA----------------NAHSNDVSII--DTATN------   64 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEE-ECSSSEEEEEECTTSSEEEEE----------------EGGGTEEEEE--ETTTT------
T ss_pred             CCCEEEEEECCCCeEEEEE-ECCCCceEEEEeCCCCEEEEE----------------ECCCCEEEEE--ECCCC------
Confidence            3557888998887644443 3334456788999999774 3                1123445555  32222      


Q ss_pred             ecCceeeEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCCe
Q 022303           99 EEGRIDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTR  173 (299)
Q Consensus        99 ~~g~~~~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~  173 (299)
                          ..++.+..|.. +..+.+ +++  .++++..++.+.+|+..+++....+..+.....+.++|+++.++  +..++.
T Consensus        65 ----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~  139 (301)
T d1l0qa2          65 ----NVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKT  139 (301)
T ss_dssp             ----EEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred             ----ceeeeeecccc-ccccccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccc
Confidence                22344455554 466777 555  56677788899999999999999999888888899999999876  555789


Q ss_pred             EEEEecCCceeeeeccCCccceeeeeccCCCeEEEec-CCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEe
Q 022303          174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS  251 (299)
Q Consensus       174 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~  251 (299)
                      +.+|+..+...............+.+.+++..++++. .++.+.+|+....+....... ...+..++++++ ..++++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~  218 (301)
T d1l0qa2         140 VSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTN  218 (301)
T ss_dssp             EEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEE
T ss_pred             eeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeecccc-cCCcceeecccccccccccc
Confidence            9999999886443322222233467888888866555 456677888877766666643 455788899988 6555443


Q ss_pred             ---CCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          252 ---SLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       252 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                         .++.|++||+.+++.+.++..+.   .+.+++|+|||++|+++
T Consensus       219 ~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va  261 (301)
T d1l0qa2         219 VDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVA  261 (301)
T ss_dssp             ECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEE
T ss_pred             ccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEE
Confidence               35689999999999998887654   68999999999987543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.74  E-value=7.1e-17  Score=132.44  Aligned_cols=181  Identities=9%  Similarity=-0.116  Sum_probs=132.8

Q ss_pred             ccccCeeEEEe-cCC-EEEEEeCC--CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCce-
Q 022303          110 AHSVGVDQCRM-KRG-LILTGVGD--KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR-  183 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~-~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~-  183 (299)
                      +|...|.++.| |++ +|++++.+  ..|++||..+++..........+..++|+|++++|+ ++.++.+++|+..+.. 
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  119 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP  119 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccce
Confidence            69999999999 777 66665544  379999999888776555556666799999999999 9999999999998875 


Q ss_pred             -eeeeccCCccceeeeeccCCCeEEEe----------cCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEe
Q 022303          184 -SVFPSREGTFMKGLCMRYFDPEAVVG----------CEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS  251 (299)
Q Consensus       184 -~~~~~~~~~~~~~~~~~~~~~~l~s~----------~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~  251 (299)
                       .....+..... .+++++++.+|+.+          ..++.+++||+.+++..... .+...+..++|+|+ ++|++++
T Consensus       120 ~~~~~~~~~~~~-~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s  197 (360)
T d1k32a3         120 TVIERSREAMIT-DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLS  197 (360)
T ss_dssp             EEEEECSSSCCC-CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEE
T ss_pred             eeeeeccccccc-chhhccceeeeeeeccccccceeeccccceeeeccccCceeeec-ccccccccccccCCCCEEEEEe
Confidence             33334433333 46899999997743          34556999999987765544 56777899999999 9999999


Q ss_pred             CCCcEEEEeCCCCce-------EEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          252 SLGSIAISGLSSDQR-------VATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       252 ~dg~i~iwd~~~~~~-------~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      .++.+.+||......       ...+..+..  .+..+.|++++..++++
T Consensus       198 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~  245 (360)
T d1k32a3         198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPG--SPNPTKLVPRSMTSEAG  245 (360)
T ss_dssp             SCCCCCEECSSSSCEECCSCBEEEEEESSTT--CCCGGGCCCGGGSCCCC
T ss_pred             CCCceEcccccccceeeccccceEEEecccC--ccccceECCCcCccccc
Confidence            999999999765432       223333333  34445566666555443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.73  E-value=5.6e-17  Score=137.02  Aligned_cols=188  Identities=12%  Similarity=0.062  Sum_probs=121.9

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEE--EecCCCce----eEEEEecCCCEEE--EEcCCeE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVE--EYSLPNAA----SLVDFDFDESKIV--GLIGTRI  174 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~----~~~~~~~~~~~l~--~~~d~~i  174 (299)
                      +.++..|. .+..++| ||+ +|++++.|++|++||+.+++...  .++.....    .+++|+|||++++  +..++.+
T Consensus        55 ~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v  133 (426)
T d1hzua2          55 VKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQF  133 (426)
T ss_dssp             EEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEE
T ss_pred             EEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeE
Confidence            45556664 5889999 777 89999999999999999887544  33332222    2356678999876  5678999


Q ss_pred             EEEecCCceee--eec-----------cC-------------------------------------------Cccceeee
Q 022303          175 CIWRRNGLRSV--FPS-----------RE-------------------------------------------GTFMKGLC  198 (299)
Q Consensus       175 ~v~d~~~~~~~--~~~-----------~~-------------------------------------------~~~~~~~~  198 (299)
                      .+||..+....  ...           ..                                           +.....+.
T Consensus       134 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (426)
T d1hzua2         134 AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGG  213 (426)
T ss_dssp             EEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEE
T ss_pred             EEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeee
Confidence            99998763210  000           00                                           00001133


Q ss_pred             eccCCCeEEEe-cCCCcEEEEEcCCc------------------------------------------------------
Q 022303          199 MRYFDPEAVVG-CEDGTARVFDMYSR------------------------------------------------------  223 (299)
Q Consensus       199 ~~~~~~~l~s~-~~d~~i~iwd~~~~------------------------------------------------------  223 (299)
                      +.+++.+++++ ..+..+.+++..++                                                      
T Consensus       214 ~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~  293 (426)
T d1hzua2         214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW  293 (426)
T ss_dssp             ECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBT
T ss_pred             ECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccc
Confidence            44555543222 23333444443322                                                      


Q ss_pred             ceeeeccccCCceeEEEeCCC-CeEEE-------EeCCCcEEEEeCCCCceEEEeec---------cCCCCcEEEEEccC
Q 022303          224 KCSQIIRMHCAPVTSLSLSED-QLIIS-------GSSLGSIAISGLSSDQRVATLRS---------TDCTGHIICLMYPQ  286 (299)
Q Consensus       224 ~~~~~~~~~~~~i~~~~~~~~-~~l~~-------~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~i~~~~~s~  286 (299)
                      +....+.+|...+..++|+|+ ++|++       ++.|++|++||+.+++...++..         +..  .|.+++|||
T Consensus       294 ~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~--rv~~~~fSp  371 (426)
T d1hzua2         294 KKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAK--RVVQPEYNK  371 (426)
T ss_dssp             SEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCC--CEEEEEECS
T ss_pred             eEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCc--cEEEEEECC
Confidence            334445567778899999999 88884       45688999999999987766532         222  699999999


Q ss_pred             CCCeEEeee
Q 022303          287 FLHMLFFLC  295 (299)
Q Consensus       287 ~g~~l~s~s  295 (299)
                      ||++++.++
T Consensus       372 DGk~i~vs~  380 (426)
T d1hzua2         372 RGDEVWFSV  380 (426)
T ss_dssp             SSSEEEEEE
T ss_pred             CCCEEEEEE
Confidence            999886544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.73  E-value=1.1e-15  Score=122.01  Aligned_cols=168  Identities=10%  Similarity=0.088  Sum_probs=135.0

Q ss_pred             EEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCCeEEEEecCCceeeeeccCCccceeeeeccC
Q 022303          125 ILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYF  202 (299)
Q Consensus       125 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  202 (299)
                      .++++.|++|.+||+++++.+.++.....+..++|+|++++++  +..++.|++||+.+.+.+...........+++.++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~   84 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPD   84 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTT
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccc
Confidence            4567889999999999999999999887777899999999875  55789999999998864433222222335678888


Q ss_pred             CCe-EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-Ce-EEEEeCCCcEEEEeCCCCceEEEeeccCCCCcE
Q 022303          203 DPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QL-IISGSSLGSIAISGLSSDQRVATLRSTDCTGHI  279 (299)
Q Consensus       203 ~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i  279 (299)
                      +.. ++++..++.+.+|+..+++....+.. ...+.++.++|+ .. ++++..++.+.+|+..+++.+..+..+.   .+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  160 (301)
T d1l0qa2          85 GKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR---SP  160 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS---SE
T ss_pred             cccccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCC---Cc
Confidence            877 55677788999999999988888754 455788999998 54 4566678899999999999888887765   68


Q ss_pred             EEEEccCCCCeEEeeec
Q 022303          280 ICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       280 ~~~~~s~~g~~l~s~s~  296 (299)
                      ..++++|++.++++++.
T Consensus       161 ~~~~~~~~~~~~~~~~~  177 (301)
T d1l0qa2         161 KGIAVTPDGTKVYVANF  177 (301)
T ss_dssp             EEEEECTTSSEEEEEET
T ss_pred             eEEEeeccccceeeecc
Confidence            89999999999888764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=3.2e-15  Score=121.16  Aligned_cols=61  Identities=5%  Similarity=-0.115  Sum_probs=52.0

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCC---ceeEEEEecCCCEEE--EEcCCeEEEEecCCcee
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPN---AASLVDFDFDESKIV--GLIGTRICIWRRNGLRS  184 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~  184 (299)
                      |+++++.|++|++||+++++.+..+..+.   .+..++|+||+++++  ++.++.|.+||+.+++.
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~   68 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET   68 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE
Confidence            89999999999999999999999887543   244599999999875  56789999999998763

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.66  E-value=4.2e-15  Score=125.32  Aligned_cols=171  Identities=11%  Similarity=-0.027  Sum_probs=120.3

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCcee--e--eeccCCccc--ee
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS--V--FPSREGTFM--KG  196 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~--~--~~~~~~~~~--~~  196 (299)
                      ++++.+.||+|++||+.+++.+.++..+..+..++|+|||++++ ++.|+.+++||+.+.+.  .  +....++..  ..
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s  113 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESS  113 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEEC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEe
Confidence            56888999999999999999999999888777799999999998 88999999999987652  2  122222222  12


Q ss_pred             eeeccCCCeE-EEecCCCcEEEEEcCCcceeeeccccCCce-----------eEEEeCCC-Ce-EEEEeCCCcEEEEeCC
Q 022303          197 LCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPV-----------TSLSLSED-QL-IISGSSLGSIAISGLS  262 (299)
Q Consensus       197 ~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i-----------~~~~~~~~-~~-l~~~~~dg~i~iwd~~  262 (299)
                      .+++|+++++ +++..++.+.+||..+++.+..+..+...+           ..+..+++ .. +.+....+.+.+++..
T Consensus       114 ~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~  193 (426)
T d1hzua2         114 KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK  193 (426)
T ss_dssp             CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECS
T ss_pred             eeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEec
Confidence            4677889986 455688999999999988877765544333           34444444 32 2233334455555555


Q ss_pred             CCceEE-EeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          263 SDQRVA-TLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       263 ~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ....+. ....+..  .+..++|+|+|++++++..
T Consensus       194 ~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~a~~  226 (426)
T d1hzua2         194 DIDNLTVTSIGAAP--FLADGGWDSSHRYFMTAAN  226 (426)
T ss_dssp             SSSSCEEEEEECCS--SEEEEEECTTSCEEEEEET
T ss_pred             cccceeeEEeccCC--ccEeeeECCCCcEEEeeee
Confidence            443222 2223333  7899999999999988763

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=2.1e-14  Score=116.19  Aligned_cols=62  Identities=15%  Similarity=0.171  Sum_probs=54.2

Q ss_pred             CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccC
Q 022303          212 DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTD  274 (299)
Q Consensus       212 d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  274 (299)
                      ++.+++||+.+++.+..+. +...+.+++|+|| ++|++++.|++|++||..+++.+.+++...
T Consensus       259 ~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~g  321 (337)
T d1pbyb_         259 YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECCC
Confidence            5789999999999888874 5667899999999 999999999999999999999999887543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.59  E-value=8e-14  Score=113.12  Aligned_cols=63  Identities=5%  Similarity=-0.068  Sum_probs=52.8

Q ss_pred             cCC-EEEEEeCCCcEEEEecCCceeEEEecCC--CceeEEEEecCCCEEE--EEcCCeEEEEecCCce
Q 022303          121 KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP--NAASLVDFDFDESKIV--GLIGTRICIWRRNGLR  183 (299)
Q Consensus       121 ~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~  183 (299)
                      +++ +|++++.|++|.+||+.+++.+.+++.+  ..+..++|+||+++++  +..++.|++||+.+.+
T Consensus         6 ~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~   73 (346)
T d1jmxb_           6 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK   73 (346)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCe
Confidence            444 9999999999999999999999988753  3455799999999875  5578999999998764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.48  E-value=2.9e-12  Score=103.66  Aligned_cols=63  Identities=10%  Similarity=0.150  Sum_probs=54.9

Q ss_pred             CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCC
Q 022303          212 DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDC  275 (299)
Q Consensus       212 d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  275 (299)
                      ++.+.+||..+++.+..+. +...+.+++|+|| +++++++.|+.|++||+++++.+.+++.+.+
T Consensus       271 ~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         271 LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred             CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence            3579999999999888774 4567999999999 9999999999999999999999999986654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.45  E-value=2.3e-11  Score=102.25  Aligned_cols=166  Identities=13%  Similarity=0.080  Sum_probs=116.4

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCcee--EEEecCCCceeE----EEEecCCCEEE--EEcCCeE
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKC--VEEYSLPNAASL----VDFDFDESKIV--GLIGTRI  174 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~----~~~~~~~~~l~--~~~d~~i  174 (299)
                      +..+..|. .+..+.| ||+ ++++++.|+++++||+.+++.  +..++.......    ..|+|||++++  +..++.+
T Consensus        55 ~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v  133 (432)
T d1qksa2          55 KTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQY  133 (432)
T ss_dssp             EEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEE
T ss_pred             EEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeE
Confidence            55666664 6889999 777 999999999999999988764  344443222222    45678999864  7779999


Q ss_pred             EEEecCCceee--eeccC----------CccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeecc-ccCCceeEEE
Q 022303          175 CIWRRNGLRSV--FPSRE----------GTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLS  240 (299)
Q Consensus       175 ~v~d~~~~~~~--~~~~~----------~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~~~  240 (299)
                      .+||..+.+..  +..+.          ......+.++++++. +++...++.|.+||..+.+...... .+...+..++
T Consensus       134 ~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~  213 (432)
T d1qksa2         134 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGG  213 (432)
T ss_dssp             EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEE
T ss_pred             EEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccce
Confidence            99999887522  21111          111113466777777 5677888999999998876544332 4456688999


Q ss_pred             eCCC-CeEEEEe-CCCcEEEEeCCCCceEEEee
Q 022303          241 LSED-QLIISGS-SLGSIAISGLSSDQRVATLR  271 (299)
Q Consensus       241 ~~~~-~~l~~~~-~dg~i~iwd~~~~~~~~~~~  271 (299)
                      |+|+ +++++++ .++.+.++|..+++.+..+.
T Consensus       214 ~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             ECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence            9999 7666665 46678999998887776654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=1.1e-11  Score=99.89  Aligned_cols=171  Identities=11%  Similarity=0.136  Sum_probs=118.2

Q ss_pred             EEEEEeCCCcEEEEecCCc---eeEEEecCCCceeEEEEecCCCEEE-EE-cCCeEEEEecCCcee--ee--eccCCccc
Q 022303          124 LILTGVGDKVMRLWSLEGY---KCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICIWRRNGLRS--VF--PSREGTFM  194 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~--~~--~~~~~~~~  194 (299)
                      .+++++.|++|++|++.+.   +.++.+..+..+..++|+|||++|+ ++ .|+.|++|++.....  ..  ........
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            4678889999999998754   4455666667777799999999986 44 489999999975531  11  11122222


Q ss_pred             eeeeeccCCCeEEEec-CCCcEEEEEcCCcceeeec--cccCCceeEEEeCCC-CeEEEEe-CCCcEEEEeCCCCceEEE
Q 022303          195 KGLCMRYFDPEAVVGC-EDGTARVFDMYSRKCSQII--RMHCAPVTSLSLSED-QLIISGS-SLGSIAISGLSSDQRVAT  269 (299)
Q Consensus       195 ~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~-~~l~~~~-~dg~i~iwd~~~~~~~~~  269 (299)
                      ..++++++++++++++ .++.+.+|+..........  ..+...+.++.++|+ +++++++ .+..|.+|+.........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            2468999999987776 4778999988765543332  355667888999999 7666665 466799999876543221


Q ss_pred             -----eeccCCCCcEEEEEccCCCCeEEeee
Q 022303          270 -----LRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       270 -----~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                           ....... ....++|++++.+++...
T Consensus       166 ~~~~~~~~~~g~-~p~~i~~~~~~~~~~~~~  195 (333)
T d1ri6a_         166 QDPAEVTTVEGA-GPRHMVFHPNEQYAYCVN  195 (333)
T ss_dssp             EEEEEEECSTTC-CEEEEEECTTSSEEEEEE
T ss_pred             eeceeeeeecCC-CccEEEEeccceeEEeec
Confidence                 1112221 678999999998887654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=3.1e-11  Score=97.18  Aligned_cols=185  Identities=10%  Similarity=0.019  Sum_probs=110.7

Q ss_pred             eccccCeeEEEe-cCC-EE-EEEeCCCcEEEEecCCcee----EEEecCCCceeEEEEecCCCEEE-EE-cCCeEEEEec
Q 022303          109 KAHSVGVDQCRM-KRG-LI-LTGVGDKVMRLWSLEGYKC----VEEYSLPNAASLVDFDFDESKIV-GL-IGTRICIWRR  179 (299)
Q Consensus       109 ~~h~~~i~~~~~-~~~-~l-~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~-~~-~d~~i~v~d~  179 (299)
                      ..|.+.+..++| |++ +| +++..|+.|++|++.....    .........+..++|+||+++|+ ++ .++.+.+|+.
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence            367889999999 777 66 4555689999999876532    22333445566799999999988 55 4678999987


Q ss_pred             CCceee--ee-ccCCccceeeeeccCCCeEEEec-CCCcEEEEEcCCcceee----------------------------
Q 022303          180 NGLRSV--FP-SREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSRKCSQ----------------------------  227 (299)
Q Consensus       180 ~~~~~~--~~-~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~----------------------------  227 (299)
                      ......  .. .........+.+++++.+++.++ .+..+.+|+........                            
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~  192 (333)
T d1ri6a_         113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY  192 (333)
T ss_dssp             ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred             ccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEE
Confidence            755311  11 11111112345666666644433 33445555543211000                            


Q ss_pred             -------------------------ecc------ccCCceeEEEeCCC-C-eEEEEeCCCcEEEEeCCCCceEEEeec--
Q 022303          228 -------------------------IIR------MHCAPVTSLSLSED-Q-LIISGSSLGSIAISGLSSDQRVATLRS--  272 (299)
Q Consensus       228 -------------------------~~~------~~~~~i~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~--  272 (299)
                                               ...      ........++++++ + .++++..++.+.+|++........+..  
T Consensus       193 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (333)
T d1ri6a_         193 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ  272 (333)
T ss_dssp             EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred             eeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEe
Confidence                                     000      01123455677777 5 444556678899998876543333222  


Q ss_pred             -cCCCCcEEEEEccCCCCeEEeee
Q 022303          273 -TDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       273 -~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                       ...  .+++++|+|||++|++++
T Consensus       273 ~~~~--~p~~~a~spDGk~l~va~  294 (333)
T d1ri6a_         273 PTET--QPRGFNVDHSGKYLIAAG  294 (333)
T ss_dssp             ECSS--SCCCEEECTTSSEEEEEC
T ss_pred             CCCC--CeeEEEEeCCCCEEEEEE
Confidence             222  678899999999988765

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.35  E-value=2.2e-10  Score=93.83  Aligned_cols=172  Identities=7%  Similarity=-0.089  Sum_probs=119.0

Q ss_pred             cCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCC------Cc-eeEEEEecCCCEEEEEcCCeEEEEecCCc
Q 022303          113 VGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLP------NA-ASLVDFDFDESKIVGLIGTRICIWRRNGL  182 (299)
Q Consensus       113 ~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~-~~~~~~~~~~~~l~~~~d~~i~v~d~~~~  182 (299)
                      ....++.+ +++  .+++.+.|+.+.+|+..+++........      .. .....+.+++..++.+.++.+.+|+..+.
T Consensus       165 ~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  244 (373)
T d2madh_         165 SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA  244 (373)
T ss_pred             ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCC
Confidence            33445555 554  7789999999999999988876655421      11 12255666666666888899999998765


Q ss_pred             eeee----eccCC---------ccceeeeeccCCCe----------EEEecCCCcEEEEEcCCcceeeeccccCCceeEE
Q 022303          183 RSVF----PSREG---------TFMKGLCMRYFDPE----------AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSL  239 (299)
Q Consensus       183 ~~~~----~~~~~---------~~~~~~~~~~~~~~----------l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~  239 (299)
                      ....    .....         ......++++++..          +++...++.+.+||..+++.+..+ .+...+..+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~-~~~~~~~~~  323 (373)
T d2madh_         245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI-SLGHDVDAI  323 (373)
T ss_pred             eEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe-cCCCCeeEE
Confidence            3111    00000         00112234444333          455667788999999999998887 456778999


Q ss_pred             EeCCC-C--eEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCC
Q 022303          240 SLSED-Q--LIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQF  287 (299)
Q Consensus       240 ~~~~~-~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  287 (299)
                      +|+|| +  ++++++.|+.|++||+.+++.++++..+..  ..+.+++.++
T Consensus       324 a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~--~P~~l~~~~~  372 (373)
T d2madh_         324 SVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGS--GPQVLSVMNE  372 (373)
T ss_pred             EECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCC--CCcEEEEecC
Confidence            99998 6  457889999999999999999999987765  6777776543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.17  E-value=3.7e-09  Score=86.32  Aligned_cols=180  Identities=5%  Similarity=-0.140  Sum_probs=120.2

Q ss_pred             eccccCeeEEEe-cCC-EEEEE-----eCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EE----------c
Q 022303          109 KAHSVGVDQCRM-KRG-LILTG-----VGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL----------I  170 (299)
Q Consensus       109 ~~h~~~i~~~~~-~~~-~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~----------~  170 (299)
                      ..+.+++..+++ |++ .++..     +..+.|.+||..+++.+.++..+... .++|+|||++++ +.          .
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~-~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc-cEEEcCCCCEEEEEeecCCccccccc
Confidence            467888888888 676 54433     23467999999999999988765433 699999999988 43          3


Q ss_pred             CCeEEEEecCCceeeee--ccCCcc------ceeeeeccCCCeEEE--ecCCCcEEEEEcCCcceeeeccccCCceeEEE
Q 022303          171 GTRICIWRRNGLRSVFP--SREGTF------MKGLCMRYFDPEAVV--GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS  240 (299)
Q Consensus       171 d~~i~v~d~~~~~~~~~--~~~~~~------~~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~  240 (299)
                      ++.|.+||..+.+....  .+....      ...+.+++++..++.  ...++.+.+|+....+.....    ....++.
T Consensus        96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  171 (373)
T d2madh_          96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYH  171 (373)
T ss_pred             ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----ccceeEE
Confidence            57899999998764322  221111      113467777776443  345667888888876655444    3356788


Q ss_pred             eCCC--CeEEEEeCCCcEEEEeCCCCceEEEeeccCC----CCcEEEEEccCCCCeEEe
Q 022303          241 LSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDC----TGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       241 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~i~~~~~s~~g~~l~s  293 (299)
                      ++|+  ..+++.+.|+.+.+|+...++..........    ......+.+++++.+++.
T Consensus       172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (373)
T d2madh_         172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP  230 (373)
T ss_pred             EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEe
Confidence            8887  5678889999999999998877665543221    002344555565555543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.17  E-value=1.5e-09  Score=87.91  Aligned_cols=129  Identities=9%  Similarity=0.045  Sum_probs=89.6

Q ss_pred             EEEecCCCEEE-EEcCCeEEEEecCCceee-eeccCCc------------cceeeeeccCCCeEEEecCC----------
Q 022303          157 VDFDFDESKIV-GLIGTRICIWRRNGLRSV-FPSREGT------------FMKGLCMRYFDPEAVVGCED----------  212 (299)
Q Consensus       157 ~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~-~~~~~~~------------~~~~~~~~~~~~~l~s~~~d----------  212 (299)
                      ..+.+++..++ ++.++.+++|++...... +......            ....+++++++..++....+          
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  279 (355)
T d2bbkh_         200 PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS  279 (355)
T ss_dssp             CEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred             ccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCC
Confidence            55666777777 888999999999876421 1111100            01135667777765543322          


Q ss_pred             CcEEEEEcCCcceeeeccccCCceeEEEeCCC-C--eEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCC
Q 022303          213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q--LIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL  288 (299)
Q Consensus       213 ~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g  288 (299)
                      ..|.+||..+++.+..+. +...+.+++|+|| +  ++++++.|+.|++||+++++.++++..+..  ....+.+.++|
T Consensus       280 ~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~--~p~~i~~~d~~  355 (355)
T d2bbkh_         280 RFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH--GPQVITTADMG  355 (355)
T ss_dssp             EEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS--SCCEEECCCCC
T ss_pred             CeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCC--CccEEEeCCCC
Confidence            469999999999888875 3456899999998 5  456777899999999999999999976644  45566655543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.14  E-value=1.9e-09  Score=87.36  Aligned_cols=181  Identities=10%  Similarity=0.042  Sum_probs=115.0

Q ss_pred             eEEeeccccCeeEEEe-cCC-EEEE----------EeCCCcEEEEecCCceeEEEecCCC--------ceeEEEEecCCC
Q 022303          105 IDQWKAHSVGVDQCRM-KRG-LILT----------GVGDKVMRLWSLEGYKCVEEYSLPN--------AASLVDFDFDES  164 (299)
Q Consensus       105 ~~~~~~h~~~i~~~~~-~~~-~l~s----------~~~dg~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~  164 (299)
                      +.++..+..+  .++| |++ +|+.          +..|+.|++||..+++.+..+..+.        ....++|+++++
T Consensus        41 ~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  118 (355)
T d2bbkh_          41 IGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK  118 (355)
T ss_dssp             EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred             EEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCC
Confidence            3444444333  5778 676 5554          3458899999999999888775322        223489999999


Q ss_pred             EEE-EE--cCCeEEEEecCCceeee--ecc------------------CCcc--------------------------ce
Q 022303          165 KIV-GL--IGTRICIWRRNGLRSVF--PSR------------------EGTF--------------------------MK  195 (299)
Q Consensus       165 ~l~-~~--~d~~i~v~d~~~~~~~~--~~~------------------~~~~--------------------------~~  195 (299)
                      .++ +.  .+..+.+|+..+.....  ...                  .+..                          ..
T Consensus       119 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  198 (355)
T d2bbkh_         119 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLIN  198 (355)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCS
T ss_pred             eeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceee
Confidence            877 43  45688999987653111  000                  0000                          00


Q ss_pred             eeeeccCCCeEEEecCCCcEEEEEcCCcceee--ecccc----------CCceeEEEeCCC-CeEEEEeCC---------
Q 022303          196 GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ--IIRMH----------CAPVTSLSLSED-QLIISGSSL---------  253 (299)
Q Consensus       196 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~----------~~~i~~~~~~~~-~~l~~~~~d---------  253 (299)
                      ...+...+..++.++.++.+.+|++..++...  ....+          ......++++++ ..++....+         
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  278 (355)
T d2bbkh_         199 HPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA  278 (355)
T ss_dssp             CCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred             eccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCC
Confidence            01233334446778889999999998765421  11111          122345778888 665554433         


Q ss_pred             -CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCe
Q 022303          254 -GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHM  290 (299)
Q Consensus       254 -g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  290 (299)
                       ..|.+||..+++.+.++....   .+.+++|+|||+.
T Consensus       279 ~~~v~v~d~~t~~~~~~~~~~~---~~~~~a~spDG~~  313 (355)
T d2bbkh_         279 SRFVVVLDAKTGERLAKFEMGH---EIDSINVSQDEKP  313 (355)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE---EECEEEECCSSSC
T ss_pred             CCeEEEEeCCCCcEEEEecCCC---CEEEEEEcCCCCe
Confidence             369999999999998887654   6899999999984

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.07  E-value=2.9e-09  Score=87.10  Aligned_cols=67  Identities=12%  Similarity=0.046  Sum_probs=52.8

Q ss_pred             cEEEEEcCCcceeeeccccCCceeEEEeCCC-C--eEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEc
Q 022303          214 TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q--LIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMY  284 (299)
Q Consensus       214 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  284 (299)
                      .|.+||..+++.+..+. +...+..++|+|| +  +++++..|+.|++||..+++.+.++.....   .+.|++
T Consensus       295 ~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~---P~~l~~  364 (368)
T d1mdah_         295 NTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG---PESLSV  364 (368)
T ss_dssp             EEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC---CCEEEC
T ss_pred             eEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC---CCEEEE
Confidence            47789999999888775 4567899999998 5  356777899999999999999999976543   344444

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.95  E-value=1.8e-08  Score=83.30  Aligned_cols=169  Identities=8%  Similarity=-0.008  Sum_probs=116.4

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecC------------------------------CCceeE-EEEecCCCEEE--EEc
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSL------------------------------PNAASL-VDFDFDESKIV--GLI  170 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------~~~~~~-~~~~~~~~~l~--~~~  170 (299)
                      .++|++.+|.|++|++.+++.+..+..                              |.+... ...+|||++++  ...
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            477889999999999999998887642                              122233 44578999986  456


Q ss_pred             CCeEEEEecCCce--eeeeccCCccceeeeeccCCCe--EEEecCCC-----------------cEEEEEcCCcceeeec
Q 022303          171 GTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPE--AVVGCEDG-----------------TARVFDMYSRKCSQII  229 (299)
Q Consensus       171 d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--l~s~~~d~-----------------~i~iwd~~~~~~~~~~  229 (299)
                      ++.|.++|+.+.+  .+.....+.....++++++++.  ++..+.+.                 .+..+|..+.+...++
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI  172 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV  172 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence            7899999999875  3444444444555688888875  33333221                 2355788887777666


Q ss_pred             cccCCceeEEEeCCC-CeEEEEeCC-----------------------------------------CcEEEEeCCCCceE
Q 022303          230 RMHCAPVTSLSLSED-QLIISGSSL-----------------------------------------GSIAISGLSSDQRV  267 (299)
Q Consensus       230 ~~~~~~i~~~~~~~~-~~l~~~~~d-----------------------------------------g~i~iwd~~~~~~~  267 (299)
                      .. ...+..+.++|+ +++++++.+                                         +.+.+++....+.+
T Consensus       173 ~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~  251 (441)
T d1qnia2         173 IV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT  251 (441)
T ss_dssp             EE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred             ec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence            54 345788899998 777766543                                         34555555555667


Q ss_pred             EEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022303          268 ATLRSTDCTGHIICLMYPQFLHMLFFLCF  296 (299)
Q Consensus       268 ~~~~~~~~~~~i~~~~~s~~g~~l~s~s~  296 (299)
                      ..+....   ....+.++|||+++++++.
T Consensus       252 ~~IPvgk---sPhGv~vSPDGkyl~~~~~  277 (441)
T d1qnia2         252 RYIPVPK---NPHGLNTSPDGKYFIANGK  277 (441)
T ss_dssp             EEECCBS---SCCCEEECTTSCEEEEECT
T ss_pred             EEEeCCC---CccCceECCCCCEEEEeCC
Confidence            7776554   4678999999999987654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.89  E-value=4.3e-08  Score=79.92  Aligned_cols=99  Identities=5%  Similarity=-0.165  Sum_probs=69.0

Q ss_pred             EeCCCc--EEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EE----------cCCeEEEEecCCceeee--eccC--
Q 022303          128 GVGDKV--MRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL----------IGTRICIWRRNGLRSVF--PSRE--  190 (299)
Q Consensus       128 ~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~----------~d~~i~v~d~~~~~~~~--~~~~--  190 (299)
                      ...++.  +.+||..+++.+..+..+... .++|+||++.++ .+          .++.|.+||..+.+...  ..+.  
T Consensus        40 ~~~~g~~~~~~~d~~~~~~~~~~~~~~~~-~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~  118 (368)
T d1mdah_          40 AYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP  118 (368)
T ss_dssp             TTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC
T ss_pred             ccCCCcceEEEEeCCCCcEEEEEeCCCCC-cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccc
Confidence            344554  667799999999888866543 589999999887 43          25689999998875332  2111  


Q ss_pred             ----CccceeeeeccCCCeEEEec-CCCcEEEEEcCCcceee
Q 022303          191 ----GTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSRKCSQ  227 (299)
Q Consensus       191 ----~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~  227 (299)
                          +.....+++++++++++++. .++.+.+||+.+++.+.
T Consensus       119 ~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~  160 (368)
T d1mdah_         119 RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQ  160 (368)
T ss_dssp             SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEE
T ss_pred             eecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeE
Confidence                11122468999999977664 57899999987765433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.89  E-value=3.2e-08  Score=81.74  Aligned_cols=186  Identities=8%  Similarity=-0.089  Sum_probs=117.8

Q ss_pred             cccCeeEEEe-cCC---EEEEEeCCC-----------------cEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-E
Q 022303          111 HSVGVDQCRM-KRG---LILTGVGDK-----------------VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G  168 (299)
Q Consensus       111 h~~~i~~~~~-~~~---~l~s~~~dg-----------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~  168 (299)
                      +...+..+.| +++   |++..+.+.                 .+..+|..+.+....+........+.++|++++++ +
T Consensus       114 ~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt  193 (441)
T d1qnia2         114 NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATST  193 (441)
T ss_dssp             TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEE
T ss_pred             CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEE
Confidence            4556777888 455   555544432                 23558888888887777666666799999999987 5


Q ss_pred             EcCC-----------------------------------------eEEEEecCCceeeeeccCCccceeeeeccCCCeE-
Q 022303          169 LIGT-----------------------------------------RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA-  206 (299)
Q Consensus       169 ~~d~-----------------------------------------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l-  206 (299)
                      +.+.                                         .+.+++............+.....+.++|++.++ 
T Consensus       194 ~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~  273 (441)
T d1qnia2         194 CYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFI  273 (441)
T ss_dssp             ESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEE
T ss_pred             ecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEE
Confidence            4332                                         2222222222222222333333457899999984 


Q ss_pred             EEecCCCcEEEEEcCCccee--------eeccc---cCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC----------C
Q 022303          207 VVGCEDGTARVFDMYSRKCS--------QIIRM---HCAPVTSLSLSED-QLIISGSSLGSIAISGLSS----------D  264 (299)
Q Consensus       207 ~s~~~d~~i~iwd~~~~~~~--------~~~~~---~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~----------~  264 (299)
                      +++..+++|.+||+.+....        ..+..   ..-.....+|+++ ..+.+...|..|..|++..          .
T Consensus       274 ~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~  353 (441)
T d1qnia2         274 ANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVN  353 (441)
T ss_dssp             EECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCC
T ss_pred             EeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCc
Confidence            66788999999998752210        01111   1112345678888 7788888999999999742          1


Q ss_pred             ceEEEee-----ccCCCCcEEEEEccCCCCeEEeeeccc
Q 022303          265 QRVATLR-----STDCTGHIICLMYPQFLHMLFFLCFLP  298 (299)
Q Consensus       265 ~~~~~~~-----~~~~~~~i~~~~~s~~g~~l~s~s~~~  298 (299)
                      ..+..+.     +|..  .+.+.+++|||+||++++-+.
T Consensus       354 ~v~~~~~v~y~~GH~~--~~~~~t~~pdGk~l~s~~k~s  390 (441)
T d1qnia2         354 YIRQKLDVQYQPGHNH--ASLTESRDADGKWLVVLSKFS  390 (441)
T ss_dssp             CEEEEEECSSCEEEEE--ETTTTSTTCCCCEEEEEESCC
T ss_pred             eeEeccccccCCCCCc--cccccccCCCCcEEEecCccc
Confidence            2444443     4433  556678999999999997653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.87  E-value=1.4e-07  Score=79.41  Aligned_cols=76  Identities=14%  Similarity=0.224  Sum_probs=57.3

Q ss_pred             eeccccCeeEEEe-cCC-EEEEEe---------CCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEE
Q 022303          108 WKAHSVGVDQCRM-KRG-LILTGV---------GDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICI  176 (299)
Q Consensus       108 ~~~h~~~i~~~~~-~~~-~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v  176 (299)
                      +..|...|.++.| ||+ +|+.++         .++.+.+||+.+++.......+..+....|+|||+.++...++.+++
T Consensus        57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~  136 (470)
T d2bgra1          57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYV  136 (470)
T ss_dssp             TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEE
T ss_pred             hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEeecccceE
Confidence            3566778999988 677 777664         35678899999887654333445556699999999999778889999


Q ss_pred             EecCCce
Q 022303          177 WRRNGLR  183 (299)
Q Consensus       177 ~d~~~~~  183 (299)
                      |+..++.
T Consensus       137 ~~~~~g~  143 (470)
T d2bgra1         137 KIEPNLP  143 (470)
T ss_dssp             ESSTTSC
T ss_pred             EECCCCc
Confidence            9987654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.77  E-value=4.7e-08  Score=82.46  Aligned_cols=137  Identities=7%  Similarity=-0.037  Sum_probs=89.4

Q ss_pred             EEEEecCCCEEEEEcCCeEEEEecCCceee--eecc-----CCccceeeeeccCCCeEEEec---------CCCcEEEEE
Q 022303          156 LVDFDFDESKIVGLIGTRICIWRRNGLRSV--FPSR-----EGTFMKGLCMRYFDPEAVVGC---------EDGTARVFD  219 (299)
Q Consensus       156 ~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~l~s~~---------~d~~i~iwd  219 (299)
                      .+.|.+++.++. ..++.+.+||..+++..  +..+     ...+ ....++|++.+|+.++         .++.+.+||
T Consensus        21 ~~~W~~d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i-~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSI-NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCC-CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCcc-ceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            355666665443 34566777777665421  1111     1111 2345677777766553         356789999


Q ss_pred             cCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCC----------------CcEEEE
Q 022303          220 MYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCT----------------GHIICL  282 (299)
Q Consensus       220 ~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------------~~i~~~  282 (299)
                      +.+++. ..+..+...+..+.|+|| +.+|... ++.+++|+..+++..+........                .....+
T Consensus        99 ~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~  176 (470)
T d2bgra1          99 LNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL  176 (470)
T ss_dssp             TTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred             CCCCcc-cccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcccc
Confidence            998765 456678888999999999 8888854 778999999988765544322110                134567


Q ss_pred             EccCCCCeEEeeec
Q 022303          283 MYPQFLHMLFFLCF  296 (299)
Q Consensus       283 ~~s~~g~~l~s~s~  296 (299)
                      .|||||++|+....
T Consensus       177 ~wSPDGk~ia~~~~  190 (470)
T d2bgra1         177 WWSPNGTFLAYAQF  190 (470)
T ss_dssp             EECTTSSEEEEEEE
T ss_pred             EECCCCCccceeEe
Confidence            89999999998754

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.73  E-value=2.2e-06  Score=67.64  Aligned_cols=190  Identities=9%  Similarity=-0.030  Sum_probs=117.3

Q ss_pred             EEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCc--eeEE--EecCCCceeEEEEecCCCEEE-EEcCCeEEEEe
Q 022303          106 DQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY--KCVE--EYSLPNAASLVDFDFDESKIV-GLIGTRICIWR  178 (299)
Q Consensus       106 ~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~--~~~~--~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d  178 (299)
                      ..+......+.++++ +++ ++++...++.+..++....  ....  ..........+.+.+++++++ .+.++.+..++
T Consensus        61 ~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~  140 (302)
T d2p4oa1          61 QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLID  140 (302)
T ss_dssp             EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeee
Confidence            344455677888888 565 7777778888887776532  2222  222223344488999998877 66788898888


Q ss_pred             cCCceeeeecc---------CCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeecc--ccCCceeEEEeCCC-C
Q 022303          179 RNGLRSVFPSR---------EGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED-Q  245 (299)
Q Consensus       179 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~-~  245 (299)
                      ..+........         .........+.+++.. +++.+..+.|..++...........  .....+..++++++ .
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~  220 (302)
T d2p4oa1         141 VVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN  220 (302)
T ss_dssp             TTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC
T ss_pred             ccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCC
Confidence            88764221110         1111112234444555 5566778888888876543222111  22344677999998 8


Q ss_pred             eEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEc---cCCCCeEEeeec
Q 022303          246 LIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMY---PQFLHMLFFLCF  296 (299)
Q Consensus       246 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~---s~~g~~l~s~s~  296 (299)
                      ++++...++.|..++.. ++..............++++|   ++|++.|+.++.
T Consensus       221 l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         221 LYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             EEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             EEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence            88888889999999875 554333332222116899999   678888876553

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.68  E-value=2.2e-06  Score=66.08  Aligned_cols=176  Identities=9%  Similarity=0.008  Sum_probs=112.1

Q ss_pred             eEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccC-C
Q 022303          116 DQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSRE-G  191 (299)
Q Consensus       116 ~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~-~  191 (299)
                      ..+++ +++ ++++....+.+++++-.+...+........+..+++++++++++ -..+..+..++..+......... .
T Consensus        60 ~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  139 (260)
T d1rwia_          60 QGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGL  139 (260)
T ss_dssp             CCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSC
T ss_pred             eEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeeccc
Confidence            45666 555 55555556666666555555544444445566699999998877 55566777777766543222211 1


Q ss_pred             ccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEe
Q 022303          192 TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATL  270 (299)
Q Consensus       192 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~  270 (299)
                      .....+++.+.+..+++...++.|..+|...................|+++++ +++++....+.|..++..... ...+
T Consensus       140 ~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~  218 (260)
T d1rwia_         140 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVL  218 (260)
T ss_dssp             CSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEEC
T ss_pred             CCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEE
Confidence            22234677787777777778888999998754433222244456789999988 888887788889888875433 2333


Q ss_pred             eccCCCCcEEEEEccCCCCeEEe
Q 022303          271 RSTDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       271 ~~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      ....- .....|+++++|.++++
T Consensus       219 ~~~~~-~~P~~i~~d~~g~l~va  240 (260)
T d1rwia_         219 PFTGL-NTPLAVAVDSDRTVYVA  240 (260)
T ss_dssp             CCCSC-CCEEEEEECTTCCEEEE
T ss_pred             ccCCC-CCeEEEEEeCCCCEEEE
Confidence            22211 16789999999987665

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.59  E-value=3.3e-06  Score=66.54  Aligned_cols=178  Identities=9%  Similarity=0.005  Sum_probs=115.2

Q ss_pred             CeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCce----eee
Q 022303          114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR----SVF  186 (299)
Q Consensus       114 ~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~----~~~  186 (299)
                      .+..+++ +++ ++++...+++|..|+.. ++..........+..++|++++++++ ...++.+..++.....    ...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~  107 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL  107 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecc
Confidence            4667888 676 78888889999888865 44444444555666799999999888 6677788887765432    222


Q ss_pred             eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc----------ccCCceeEEEeCCCCeEEEEeCCCcE
Q 022303          187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR----------MHCAPVTSLSLSEDQLIISGSSLGSI  256 (299)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------~~~~~i~~~~~~~~~~l~~~~~dg~i  256 (299)
                      ..........+++.+++..+++.+.++.+..+|...+.......          ........+.+..+.++++.+..+.|
T Consensus       108 ~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i  187 (302)
T d2p4oa1         108 TLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLL  187 (302)
T ss_dssp             ECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEE
T ss_pred             ccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeE
Confidence            22233333345777778777777888888888887654321111          11234566777666677777888999


Q ss_pred             EEEeCCCCceEEEee--ccCCCCcEEEEEccCCCCeEEee
Q 022303          257 AISGLSSDQRVATLR--STDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       257 ~iwd~~~~~~~~~~~--~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      ..++...........  ....  ....++++++|+++++.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~--~pdgia~d~dG~l~va~  225 (302)
T d2p4oa1         188 LRIPVDSTDKPGEPEIFVEQT--NIDDFAFDVEGNLYGAT  225 (302)
T ss_dssp             EEEEBCTTSCBCCCEEEEESC--CCSSEEEBTTCCEEEEC
T ss_pred             EeccccccccccccccccCCC--CCcceEECCCCCEEEEE
Confidence            988876543221111  1122  45678999999876654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.57  E-value=4.3e-06  Score=64.38  Aligned_cols=176  Identities=6%  Similarity=-0.030  Sum_probs=102.0

Q ss_pred             eEEEe-cCC--EEEEEeCCCcEEEEecCCceeE-EEecCCCceeEEEEecCCCEEEEEcCC-eEEEEecCCceeeeeccC
Q 022303          116 DQCRM-KRG--LILTGVGDKVMRLWSLEGYKCV-EEYSLPNAASLVDFDFDESKIVGLIGT-RICIWRRNGLRSVFPSRE  190 (299)
Q Consensus       116 ~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~d~-~i~v~d~~~~~~~~~~~~  190 (299)
                      ..+++ +++  +++..+..+.+..++....... ........+..++++++++++++...+ .+++++..+.........
T Consensus        17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~   96 (260)
T d1rwia_          17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG   96 (260)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS
T ss_pred             CEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee
Confidence            56777 455  3444455677777665533222 222233344558999999877754444 555554444433332222


Q ss_pred             CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEE
Q 022303          191 GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVAT  269 (299)
Q Consensus       191 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~  269 (299)
                      ......+++.+.+..+++-..+..+..++...................++++++ +++++...++.|..+|...... ..
T Consensus        97 ~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~-~~  175 (260)
T d1rwia_          97 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-VV  175 (260)
T ss_dssp             CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE-EE
T ss_pred             eeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee-ee
Confidence            222334567777666666556666777766543322211122345678999988 8888888888999999865443 33


Q ss_pred             ee-ccCCCCcEEEEEccCCCCeEEee
Q 022303          270 LR-STDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       270 ~~-~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      +. ....  ....++++++|+++++.
T Consensus       176 ~~~~~~~--~p~gi~~d~~g~l~vsd  199 (260)
T d1rwia_         176 LPFTDIT--APWGIAVDEAGTVYVTE  199 (260)
T ss_dssp             CCCSSCC--SEEEEEECTTCCEEEEE
T ss_pred             eeccccC--CCccceeeeeeeeeeee
Confidence            32 2233  67899999999877664

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=8.2e-05  Score=56.86  Aligned_cols=182  Identities=12%  Similarity=0.013  Sum_probs=103.0

Q ss_pred             eccccCeeEEEe-cCC-EEEEEeCCC---cEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEc-CCe--EEEEec
Q 022303          109 KAHSVGVDQCRM-KRG-LILTGVGDK---VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI-GTR--ICIWRR  179 (299)
Q Consensus       109 ~~h~~~i~~~~~-~~~-~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~-d~~--i~v~d~  179 (299)
                      ..+...+..-.| ||+ .||-...+.   .+.+.+...+................|+|+++.++ ... ++.  +..+..
T Consensus        35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~  114 (269)
T d2hqsa1          35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  114 (269)
T ss_dssp             EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence            445667777888 777 666554333   46666777766655555555666699999999988 333 333  333333


Q ss_pred             CCceeeeeccCCccceeeeeccCCCe-EEEecCCCc--EEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC-CC
Q 022303          180 NGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LG  254 (299)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg  254 (299)
                      ...................+.+.+.. +++...++.  |...++..+... .............++|+ +.++..+. .+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~~~~~~~  193 (269)
T d2hqsa1         115 ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGG  193 (269)
T ss_dssp             TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred             ccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccccccccccceeEEEeecCC
Confidence            32222211111111112344555554 444444554  555566655433 33345566778889998 76666554 44


Q ss_pred             c--EEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022303          255 S--IAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       255 ~--i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      .  +.+.|...+..  .+.....  ......|||||+.|+-.+
T Consensus       194 ~~~i~~~~~~~~~~--~~~~~~~--~~~~p~~SPDG~~i~f~s  232 (269)
T d2hqsa1         194 QQHIAKQDLATGGV--QVLSSTF--LDETPSLAPNGTMVIYSS  232 (269)
T ss_dssp             CEEEEEEETTTCCE--EECCCSS--SCEEEEECTTSSEEEEEE
T ss_pred             ceeeeEeecccccc--eEeecCc--cccceEECCCCCEEEEEE
Confidence            4  44445544432  3333333  577889999999987544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.44  E-value=0.00017  Score=56.21  Aligned_cols=178  Identities=7%  Similarity=-0.059  Sum_probs=113.3

Q ss_pred             ccCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCC--C--c-eeEEEEecCCCEEEEEc-----CCeEEEEecC
Q 022303          112 SVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP--N--A-ASLVDFDFDESKIVGLI-----GTRICIWRRN  180 (299)
Q Consensus       112 ~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~--~-~~~~~~~~~~~~l~~~~-----d~~i~v~d~~  180 (299)
                      ...+.++.+ +++.|+.++.+ .+.++|..+++........  .  . ...+.+.++|++.+++.     .+.-.+|.+.
T Consensus        58 ~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~  136 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA  136 (295)
T ss_dssp             SSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeec
Confidence            446777777 66655556665 4788899988765433321  1  1 22388899999877543     2244555554


Q ss_pred             CceeeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcc------e--eeeccccCCceeEEEeCCC-CeEEEE
Q 022303          181 GLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK------C--SQIIRMHCAPVTSLSLSED-QLIISG  250 (299)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~------~--~~~~~~~~~~i~~~~~~~~-~~l~~~  250 (299)
                      .++.......-.....+++++++.. +++-+..+.|..+++....      .  .............+++..+ ++.++.
T Consensus       137 ~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~  216 (295)
T d2ghsa1         137 KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR  216 (295)
T ss_dssp             TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred             CCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeee
Confidence            4432111111122235688888886 4566678889988875311      1  1122234456788999888 777666


Q ss_pred             eCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEcc-CCCCeEEe
Q 022303          251 SSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYP-QFLHMLFF  293 (299)
Q Consensus       251 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~s  293 (299)
                      -..+.|..||. +|+.+..+.....  .+++++|- |+.+.|+.
T Consensus       217 ~~~g~V~~~dp-~G~~~~~i~lP~~--~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         217 WGEGAVDRYDT-DGNHIARYEVPGK--QTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             ETTTEEEEECT-TCCEEEEEECSCS--BEEEEEEESTTSCEEEE
T ss_pred             eCCCceEEecC-CCcEeeEecCCCC--ceEEEEEeCCCCCEEEE
Confidence            67888999995 6999999987766  79999995 67665553

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.44  E-value=7.8e-05  Score=58.81  Aligned_cols=175  Identities=13%  Similarity=0.132  Sum_probs=107.8

Q ss_pred             eEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCC-----ceeEEEEecCCCEEEEEc----------------CC
Q 022303          116 DQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN-----AASLVDFDFDESKIVGLI----------------GT  172 (299)
Q Consensus       116 ~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~----------------d~  172 (299)
                      ..+.+ +++ .++++.....+...+.+...........+     ....++++++|++.++..                .|
T Consensus        74 ~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G  153 (314)
T d1pjxa_          74 AGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             EEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             eeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCc
Confidence            45777 455 77777777778888877554322111111     123488999998776432                23


Q ss_pred             eEEEEecCCceeeeeccCCccceeeeeccCCC----e-EEEecCCCcEEEEEcCCcceee------eccc-cCCceeEEE
Q 022303          173 RICIWRRNGLRSVFPSREGTFMKGLCMRYFDP----E-AVVGCEDGTARVFDMYSRKCSQ------IIRM-HCAPVTSLS  240 (299)
Q Consensus       173 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~-l~s~~~d~~i~iwd~~~~~~~~------~~~~-~~~~i~~~~  240 (299)
                      .|+.++............. ....+++.++++    . +++-+..+.|..||+.....+.      .+.. .....-.++
T Consensus       154 ~v~~~~~dg~~~~~~~~~~-~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGia  232 (314)
T d1pjxa_         154 SIYCFTTDGQMIQVDTAFQ-FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD  232 (314)
T ss_dssp             EEEEECTTSCEEEEEEEES-SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred             eEEEEeecCceeEeeCCcc-eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeE
Confidence            4555555433222111111 112457777654    2 4455678889998876432221      1211 223456799


Q ss_pred             eCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022303          241 LSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       241 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      +.++ +++++....+.|.+||...++.+..+..+..  ..++++|.|+++.|+.
T Consensus       233 vD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~--~~t~~afg~d~~~lyV  284 (314)
T d1pjxa_         233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFV  284 (314)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS--CEEEEEECTTSSEEEE
T ss_pred             EecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCC--CEEEEEEeCCCCEEEE
Confidence            9888 8777777889999999988887777776655  7899999999975544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.38  E-value=9.4e-05  Score=57.22  Aligned_cols=164  Identities=12%  Similarity=0.086  Sum_probs=109.4

Q ss_pred             EeCCCcEEEEecCCceeEEEecCC--CceeEEEEecCCCEEE-EEcCCeEEEEecCCceee-eeccC-CccceeeeeccC
Q 022303          128 GVGDKVMRLWSLEGYKCVEEYSLP--NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV-FPSRE-GTFMKGLCMRYF  202 (299)
Q Consensus       128 ~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~-~~~~~-~~~~~~~~~~~~  202 (299)
                      .+.++.|..++. .++....+...  .....+++.+++++++ ....+.+.+++....... +.... ......+++.+.
T Consensus        89 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~  167 (279)
T d1q7fa_          89 RSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDK  167 (279)
T ss_dssp             CGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSS
T ss_pred             cCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccc
Confidence            345567777765 46666666533  3344588899998877 555678888887655322 21111 112223466666


Q ss_pred             CCeEEEecCCCcEEEEEcCCcceeeecc--ccCCceeEEEeCCC-CeEEEEeC-CCcEEEEeCCCCceEEEeeccCCCCc
Q 022303          203 DPEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED-QLIISGSS-LGSIAISGLSSDQRVATLRSTDCTGH  278 (299)
Q Consensus       203 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~  278 (299)
                      +..+++....+.|.+||.. ++.+.++.  +.......|+++++ +++++-.. ++.|.+|+. +|+.+.++........
T Consensus       168 g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~  245 (279)
T d1q7fa_         168 QEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQ  245 (279)
T ss_dssp             SEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSC
T ss_pred             eeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCC
Confidence            6667777888899999975 66666663  34456789999998 76666543 457999995 6888888765543226


Q ss_pred             EEEEEccCCCCeEEee
Q 022303          279 IICLMYPQFLHMLFFL  294 (299)
Q Consensus       279 i~~~~~s~~g~~l~s~  294 (299)
                      ...+++.|+|.++++.
T Consensus       246 p~~vav~~dG~l~V~~  261 (279)
T d1q7fa_         246 CFDVALMDDGSVVLAS  261 (279)
T ss_dssp             EEEEEEETTTEEEEEE
T ss_pred             EeEEEEeCCCcEEEEe
Confidence            8999999999876654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.32  E-value=0.0002  Score=55.32  Aligned_cols=177  Identities=12%  Similarity=0.105  Sum_probs=114.2

Q ss_pred             eeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCC----C---ceeEEEEecCCC-EEEE--EcCCeEEEEecCCc
Q 022303          115 VDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP----N---AASLVDFDFDES-KIVG--LIGTRICIWRRNGL  182 (299)
Q Consensus       115 i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~---~~~~~~~~~~~~-~l~~--~~d~~i~v~d~~~~  182 (299)
                      -..+++ +++ ++++-..+..|++||.+ ++.+..+...    .   ....+++..+.. .++.  ..++.|..++....
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~  103 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ  103 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSC
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccccc
Confidence            467787 555 66666677899999965 7777666421    1   122355555544 3432  34457777776554


Q ss_pred             ee-eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc--ccCCceeEEEeCCC-CeEEEEeCCCcEEE
Q 022303          183 RS-VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED-QLIISGSSLGSIAI  258 (299)
Q Consensus       183 ~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~dg~i~i  258 (299)
                      .. .+..........+++.+.+..+++....+.+.+++.. ++.+..+.  .+......+++.++ .++++....+.|++
T Consensus       104 ~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~  182 (279)
T d1q7fa_         104 FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKV  182 (279)
T ss_dssp             EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEE
T ss_pred             ceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceee
Confidence            32 2222222222345677777777777777778888765 56655542  44566788999888 78888888999999


Q ss_pred             EeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          259 SGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       259 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      ||. +++.+.++..........+++++++|+.+++-
T Consensus       183 ~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad  217 (279)
T d1q7fa_         183 FNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIAD  217 (279)
T ss_dssp             EET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEE
T ss_pred             eec-CCceeeeecccccccCCcccccccCCeEEEEE
Confidence            997 57878777432222268899999999977764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.29  E-value=0.00032  Score=55.25  Aligned_cols=182  Identities=9%  Similarity=0.002  Sum_probs=108.8

Q ss_pred             ccccCeeEEEe-cCC-EEEEEeC----CCcEEEEecCCceeEEEecCC---CceeEEEEecCCCEEEEEcC-------Ce
Q 022303          110 AHSVGVDQCRM-KRG-LILTGVG----DKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDESKIVGLIG-------TR  173 (299)
Q Consensus       110 ~h~~~i~~~~~-~~~-~l~s~~~----dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~d-------~~  173 (299)
                      ........+++ +++ ++++...    .+.+...+..+..........   .....+.+.++|++.++...       +.
T Consensus        79 ~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~  158 (319)
T d2dg1a1          79 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG  158 (319)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred             CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcce
Confidence            34445667888 566 4443322    233455555554444333322   12233889999987765433       24


Q ss_pred             EEEEecCCce--eeeeccCCccceeeeeccCCCeE-EEecCCCcEEEEEcCCc-ceeeec-------cccCCceeEEEeC
Q 022303          174 ICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEA-VVGCEDGTARVFDMYSR-KCSQII-------RMHCAPVTSLSLS  242 (299)
Q Consensus       174 i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~-~~~~~~-------~~~~~~i~~~~~~  242 (299)
                      +..++.....  ......  .....+++++++..| ++-+..+.|..||+... ......       .........+++.
T Consensus       159 v~~~~~dg~~~~~~~~~~--~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD  236 (319)
T d2dg1a1         159 VYYVSPDFRTVTPIIQNI--SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID  236 (319)
T ss_dssp             EEEECTTSCCEEEEEEEE--SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred             eEEEecccceeEEEeecc--ceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEc
Confidence            6656655432  111111  122347899998875 55567889999987632 211111       1122336689999


Q ss_pred             CC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCC----CCcEEEEEccCCCCeEEee
Q 022303          243 ED-QLIISGSSLGSIAISGLSSDQRVATLRSTDC----TGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       243 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~i~~~~~s~~g~~l~s~  294 (299)
                      ++ ++.++....+.|.++|. +|+.+.++.....    ...+++++|.+++..+++.
T Consensus       237 ~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t  292 (319)
T d2dg1a1         237 SDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIIC  292 (319)
T ss_dssp             TTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred             CCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEE
Confidence            88 88888888999999996 6999888864431    1157899999987766554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=0.00055  Score=52.01  Aligned_cols=194  Identities=13%  Similarity=0.037  Sum_probs=106.8

Q ss_pred             hhhhccccceee-----cCcee----------eEEeeccccCeeEEEe-cCC-EEEE-EeCCCcEEEEe--cCCceeEEE
Q 022303           88 ELAMKHHRFALE-----EGRID----------IDQWKAHSVGVDQCRM-KRG-LILT-GVGDKVMRLWS--LEGYKCVEE  147 (299)
Q Consensus        88 ~~~~~~~~~~l~-----~g~~~----------~~~~~~h~~~i~~~~~-~~~-~l~s-~~~dg~i~iwd--~~~~~~~~~  147 (299)
                      .-.++|+++.++     .+...          ...+..+.+......| +++ .++. ...++...++.  .........
T Consensus        43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~  122 (269)
T d2hqsa1          43 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV  122 (269)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC
T ss_pred             eeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceee
Confidence            346778887765     22111          2334455566666666 555 4433 33333333332  223333333


Q ss_pred             ecCCCceeEEEEecCCCEEE--EEcCC--eEEEEecCCceeeeeccCCccceeeeeccCCCeEEEec-CCCcEEEE--Ec
Q 022303          148 YSLPNAASLVDFDFDESKIV--GLIGT--RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVF--DM  220 (299)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~l~--~~~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iw--d~  220 (299)
                      ...........+++++..+.  ...++  .+...++...................+++++..++..+ ..+...+|  |.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~  202 (269)
T d2hqsa1         123 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL  202 (269)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred             eeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeec
Confidence            33334444467777777766  33444  56666766654322222222222357888988866544 44444444  44


Q ss_pred             CCcceeeeccccCCceeEEEeCCC-CeEEEEeC---CCcEEEEeCCCCceEEEeeccCCCCcEEEEEccC
Q 022303          221 YSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS---LGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQ  286 (299)
Q Consensus       221 ~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  286 (299)
                      ..+..  .............|+|| +.|+..+.   ...|.++++..+. ...+.....  .+...+|||
T Consensus       203 ~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-~~~lt~~~g--~~~~p~WSP  267 (269)
T d2hqsa1         203 ATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDG--QVKFPAWSP  267 (269)
T ss_dssp             TTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSS--EEEEEEECC
T ss_pred             ccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEEeCCCC--cEEeEEeCC
Confidence            43332  33344556678899999 77665443   3468899997555 455555554  788899998

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.17  E-value=0.00047  Score=55.42  Aligned_cols=143  Identities=10%  Similarity=-0.023  Sum_probs=86.6

Q ss_pred             eeEEEEecCCCEEE-EE-cCCeEEEEecCCcee------eeeccCCccceeeeeccCCCeE-EEecCCCcEEEEEcCCcc
Q 022303          154 ASLVDFDFDESKIV-GL-IGTRICIWRRNGLRS------VFPSREGTFMKGLCMRYFDPEA-VVGCEDGTARVFDMYSRK  224 (299)
Q Consensus       154 ~~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~  224 (299)
                      +..+.|+|++++++ +. ....|.+|+......      ......+....-++++++++.+ ++.-.++.|.+|+...++
T Consensus       147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence            44599999999888 33 345888888654321      1111223333346899999985 455568899999987654


Q ss_pred             eeeecc-------------------ccCCceeEEEeCCC-CeEEEEeC-C-----CcEEEEeCCCCceEEEe----eccC
Q 022303          225 CSQIIR-------------------MHCAPVTSLSLSED-QLIISGSS-L-----GSIAISGLSSDQRVATL----RSTD  274 (299)
Q Consensus       225 ~~~~~~-------------------~~~~~i~~~~~~~~-~~l~~~~~-d-----g~i~iwd~~~~~~~~~~----~~~~  274 (299)
                      ......                   .+......+.++|+ ++|+++.. +     +.|..|++.....+...    ....
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  306 (365)
T d1jofa_         227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT  306 (365)
T ss_dssp             CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS
T ss_pred             ceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEc
Confidence            321110                   11223567899999 87776642 2     23777877653222211    1111


Q ss_pred             CCCcEEEEEccC-CCCeEEeeec
Q 022303          275 CTGHIICLMYPQ-FLHMLFFLCF  296 (299)
Q Consensus       275 ~~~~i~~~~~s~-~g~~l~s~s~  296 (299)
                      ......+++++| +|++|+++..
T Consensus       307 ~G~~p~~i~~~p~~G~~l~va~~  329 (365)
T d1jofa_         307 SGGHSNAVSPCPWSDEWMAITDD  329 (365)
T ss_dssp             CCTTCCCEEECTTCTTEEEEECS
T ss_pred             CCCCccEEEecCCCCCEEEEEeC
Confidence            111567899998 8999888753

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.05  E-value=0.00057  Score=54.89  Aligned_cols=151  Identities=8%  Similarity=0.016  Sum_probs=90.5

Q ss_pred             CeeEEEe-cCC-EEEEEeC-CCcEEEEecCC-ceeE--EEec---CCCceeEEEEecCCCEEE--EEcCCeEEEEecCCc
Q 022303          114 GVDQCRM-KRG-LILTGVG-DKVMRLWSLEG-YKCV--EEYS---LPNAASLVDFDFDESKIV--GLIGTRICIWRRNGL  182 (299)
Q Consensus       114 ~i~~~~~-~~~-~l~s~~~-dg~i~iwd~~~-~~~~--~~~~---~~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~  182 (299)
                      -+.++.| |++ +++++.. ...|.+|+... ++..  ....   .......+.|+|+++++.  .-.+++|.+|+....
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            3567888 677 6666653 45788887553 3322  2222   234566799999999886  445789999998764


Q ss_pred             ee--eee-----cc-------------CCccceeeeeccCCCeEEEecC------CCcEEEEEcCCcceeee------cc
Q 022303          183 RS--VFP-----SR-------------EGTFMKGLCMRYFDPEAVVGCE------DGTARVFDMYSRKCSQI------IR  230 (299)
Q Consensus       183 ~~--~~~-----~~-------------~~~~~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~------~~  230 (299)
                      ..  ...     ..             .......+.++|++.+++++..      ...|..|++.....+..      ..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            31  100     00             0011224678999999776532      22377777654322211      11


Q ss_pred             ccCCceeEEEeCC-C-CeEEEE-eCCCcEEEEeCCCC
Q 022303          231 MHCAPVTSLSLSE-D-QLIISG-SSLGSIAISGLSSD  264 (299)
Q Consensus       231 ~~~~~i~~~~~~~-~-~~l~~~-~~dg~i~iwd~~~~  264 (299)
                      ........++++| + ++|+++ ..++.|.+|+++..
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            2334567799998 5 766555 56899999987543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=0.00055  Score=56.95  Aligned_cols=177  Identities=7%  Similarity=-0.019  Sum_probs=102.6

Q ss_pred             CeeEEEe-cCC-EEEEE---------eCCCcEEEEecCCceeEEEecC--CCcee-EEEEecCCCEEEEEcCCeEEEEec
Q 022303          114 GVDQCRM-KRG-LILTG---------VGDKVMRLWSLEGYKCVEEYSL--PNAAS-LVDFDFDESKIVGLIGTRICIWRR  179 (299)
Q Consensus       114 ~i~~~~~-~~~-~l~s~---------~~dg~i~iwd~~~~~~~~~~~~--~~~~~-~~~~~~~~~~l~~~~d~~i~v~d~  179 (299)
                      .+....+ +++ +++..         +..+.+.++|+.+++.......  ....+ ...|+|+|+.++-..++.+++.+.
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~  141 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAH  141 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESS
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEecceEEEEec
Confidence            4445556 566 55444         3457889999998876443222  22223 388999999999777889999988


Q ss_pred             CCceeeeeccCC-------------------ccceeeeeccCCCeEEEecC-CC--------------------------
Q 022303          180 NGLRSVFPSREG-------------------TFMKGLCMRYFDPEAVVGCE-DG--------------------------  213 (299)
Q Consensus       180 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~s~~~-d~--------------------------  213 (299)
                      .++........+                   .....+.|+|++.+|+.... +.                          
T Consensus       142 ~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~  221 (465)
T d1xfda1         142 VGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA  221 (465)
T ss_dssp             SSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred             CCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecccc
Confidence            765422111111                   11234568999999765431 12                          


Q ss_pred             -------cEEEEEcCCcceeeec------cccCCceeEEEeCCC-CeEEEEeC-C---CcEEEEeCCCCceEEEeeccCC
Q 022303          214 -------TARVFDMYSRKCSQII------RMHCAPVTSLSLSED-QLIISGSS-L---GSIAISGLSSDQRVATLRSTDC  275 (299)
Q Consensus       214 -------~i~iwd~~~~~~~~~~------~~~~~~i~~~~~~~~-~~l~~~~~-d---g~i~iwd~~~~~~~~~~~~~~~  275 (299)
                             .+.++|+.++......      ......+..+.|.|+ ++++.... +   ..|.++|..++++...+.....
T Consensus       222 G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~  301 (465)
T d1xfda1         222 GSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE  301 (465)
T ss_dssp             TSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS
T ss_pred             CCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCC
Confidence                   2445555443322111      112334678899988 54444322 2   2578899999887655543322


Q ss_pred             CCcE----EEEEccCCCCeE
Q 022303          276 TGHI----ICLMYPQFLHML  291 (299)
Q Consensus       276 ~~~i----~~~~~s~~g~~l  291 (299)
                      . .|    ....|+|+|+.+
T Consensus       302 ~-wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         302 A-WLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             S-CCCCCCCCCEECTTSCSE
T ss_pred             c-eEeccCCceeEccCCCee
Confidence            1 22    235688888754

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=1e-05  Score=42.48  Aligned_cols=40  Identities=33%  Similarity=0.600  Sum_probs=36.3

Q ss_pred             ccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHH
Q 022303           25 ESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLL   64 (299)
Q Consensus        25 ~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w   64 (299)
                      ..+|.|+..+|++++++.+.+++..+|+.|+.++.+..+|
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            4689999999999999999999999999999999866665

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.00017  Score=60.17  Aligned_cols=137  Identities=9%  Similarity=-0.034  Sum_probs=78.7

Q ss_pred             EEecCCCEEEEEcCCeEEEEecCCcee--eeeccCC--ccceeeeeccCCCeEEEe---------cCCCcEEEEEcCCcc
Q 022303          158 DFDFDESKIVGLIGTRICIWRRNGLRS--VFPSREG--TFMKGLCMRYFDPEAVVG---------CEDGTARVFDMYSRK  224 (299)
Q Consensus       158 ~~~~~~~~l~~~~d~~i~v~d~~~~~~--~~~~~~~--~~~~~~~~~~~~~~l~s~---------~~d~~i~iwd~~~~~  224 (299)
                      .|.+++.++.-..+|.+.+||+.++..  .+....-  .......++|++.+++..         +..+.+.++|+.+++
T Consensus        23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          23 KWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            344555444444455666666654431  1111110  111123466666664443         335678899999876


Q ss_pred             eeeec--cccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCC----------------CcEEEEEcc
Q 022303          225 CSQII--RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCT----------------GHIICLMYP  285 (299)
Q Consensus       225 ~~~~~--~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------------~~i~~~~~s  285 (299)
                      .....  ......+....|+|| +.+|-.. ++.|.+.+...++.++........                ..-.++-||
T Consensus       103 ~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WS  181 (465)
T d1xfda1         103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS  181 (465)
T ss_dssp             CEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC
T ss_pred             eeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEEC
Confidence            54332  233445667889999 7777765 677999998777655544322111                012467899


Q ss_pred             CCCCeEEeee
Q 022303          286 QFLHMLFFLC  295 (299)
Q Consensus       286 ~~g~~l~s~s  295 (299)
                      |||++||...
T Consensus       182 PDgk~iaf~~  191 (465)
T d1xfda1         182 PDGTRLAYAA  191 (465)
T ss_dssp             TTSSEEEEEE
T ss_pred             CCCCeEEEEE
Confidence            9999999764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.65  E-value=0.002  Score=50.38  Aligned_cols=108  Identities=9%  Similarity=0.070  Sum_probs=74.1

Q ss_pred             EEEEecCCC----EEE--EEcCCeEEEEecCCce-----eeeeccCC---ccceeeeeccCCCeEEEecCCCcEEEEEcC
Q 022303          156 LVDFDFDES----KIV--GLIGTRICIWRRNGLR-----SVFPSREG---TFMKGLCMRYFDPEAVVGCEDGTARVFDMY  221 (299)
Q Consensus       156 ~~~~~~~~~----~l~--~~~d~~i~v~d~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  221 (299)
                      -++|+++++    .|+  -+..+.|..||+....     ..+....+   .....+++..++...++....+.|.+||.+
T Consensus       176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~  255 (314)
T d1pjxa_         176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence            478888764    343  4567889999875432     11211111   122346788888776777778899999998


Q ss_pred             CcceeeeccccCCceeEEEeCCC-C-eEEEEeCCCcEEEEeCCC
Q 022303          222 SRKCSQIIRMHCAPVTSLSLSED-Q-LIISGSSLGSIAISGLSS  263 (299)
Q Consensus       222 ~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~iwd~~~  263 (299)
                      .++.+..+......+++++|.|+ + ++++.+.+|.|.-.++..
T Consensus       256 ~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         256 GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            88777767665667899999998 5 667777788888888653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.60  E-value=0.0091  Score=46.59  Aligned_cols=180  Identities=10%  Similarity=0.026  Sum_probs=100.3

Q ss_pred             CeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEec-CCCceeEEEEecCCCEEEEEc-----CCeEEEEecCCceee
Q 022303          114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIVGLI-----GTRICIWRRNGLRSV  185 (299)
Q Consensus       114 ~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-----d~~i~v~d~~~~~~~  185 (299)
                      .+-.+.| +++ +.++-..++.|..|+.++.+....+. .......++++++++++++..     .+.+...+..+....
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence            4456788 555 66666688899999988776554443 334455699999999877443     234555555544311


Q ss_pred             -eecc-C-CccceeeeeccCCCeEEEecC------CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-C-eEEEEeCCC
Q 022303          186 -FPSR-E-GTFMKGLCMRYFDPEAVVGCE------DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGSSLG  254 (299)
Q Consensus       186 -~~~~-~-~~~~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg  254 (299)
                       .... . .....-+.+.+++...++...      .+.+..++... +.+..+...-...+.++|+|+ + ++++-+..+
T Consensus       121 ~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~  199 (319)
T d2dg1a1         121 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNISVANGIALSTDEKVLWVTETTAN  199 (319)
T ss_dssp             EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred             eeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeeccceeeeeeeccccceEEEecccCC
Confidence             1111 1 111122456677764444222      12354555443 333333233345688999998 6 456666788


Q ss_pred             cEEEEeCCCC-ceEEEe-----eccCCCCcEEEEEccCCCCeEEee
Q 022303          255 SIAISGLSSD-QRVATL-----RSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       255 ~i~iwd~~~~-~~~~~~-----~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      .|..||+... ......     ...........|+++++|++.++.
T Consensus       200 ~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~  245 (319)
T d2dg1a1         200 RLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM  245 (319)
T ss_dssp             EEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE
T ss_pred             ceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEE
Confidence            9999997642 211111     111111145678888888866653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.53  E-value=0.0033  Score=50.56  Aligned_cols=168  Identities=10%  Similarity=0.042  Sum_probs=103.5

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecC--------------------------------------------CCceeEEEE
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSL--------------------------------------------PNAASLVDF  159 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------------------------------------~~~~~~~~~  159 (299)
                      .+.||+..|.|+++-+.+++.+..+..                                            |.+  .+.+
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP--~~S~   92 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHV--HMSF   92 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCE--EEEE
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCC--cccc
Confidence            477888999999998887766665531                                            111  2444


Q ss_pred             e---cCCCEEE--EEcCCeEEEEecCCcee--eeeccCCccceeeeec--cCCCeEEEecCC------------------
Q 022303          160 D---FDESKIV--GLIGTRICIWRRNGLRS--VFPSREGTFMKGLCMR--YFDPEAVVGCED------------------  212 (299)
Q Consensus       160 ~---~~~~~l~--~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~--~~~~~l~s~~~d------------------  212 (299)
                      .   +||++++  -..+..|.+-|+.+.+.  +...........++..  +...+++.++.+                  
T Consensus        93 TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~  172 (459)
T d1fwxa2          93 TEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  172 (459)
T ss_dssp             ETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred             cCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence            3   3777877  44577999999988763  4444444333333333  333445554442                  


Q ss_pred             CcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCC--------------------------------------
Q 022303          213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL--------------------------------------  253 (299)
Q Consensus       213 ~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d--------------------------------------  253 (299)
                      +.+.++|..+.+...++.. ......+.++++ +++++.+.+                                      
T Consensus       173 ~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ei  251 (459)
T d1fwxa2         173 NVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  251 (459)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             eEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEe
Confidence            2366789888887776653 334677888998 888777643                                      


Q ss_pred             CcEEEEeCCCC---ceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          254 GSIAISGLSSD---QRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       254 g~i~iwd~~~~---~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +.+.+-|.++.   ..+..+....   ....+.++|||+|+++++..
T Consensus       252 ngV~VVD~~~~~~~~v~~yIPVpK---sPHGV~vSPDGKyi~VaGKL  295 (459)
T d1fwxa2         252 NGVKVVDGRKEASSLFTRYIPIAN---NPHGCNMAPDKKHLCVAGKL  295 (459)
T ss_dssp             TTEEEEECSGG--CSSEEEEEEES---SCCCEEECTTSSEEEEECTT
T ss_pred             CCceeecccccCCcceeEEEecCC---CCCceEECCCCCEEEEeCCc
Confidence            22344444431   2233333333   45678999999999988753

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=3.9e-05  Score=49.57  Aligned_cols=52  Identities=19%  Similarity=0.268  Sum_probs=47.7

Q ss_pred             cchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhc
Q 022303           21 RATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLH   72 (299)
Q Consensus        21 ~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~   72 (299)
                      .+.|..||.|+..+|++++++.+.+.+..+|+.|+.++.+..+|+.+|.+..
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~   67 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEG   67 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTT
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcC
Confidence            4678889999999999999999999999999999999999999999887653

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=7e-05  Score=48.11  Aligned_cols=50  Identities=32%  Similarity=0.428  Sum_probs=44.5

Q ss_pred             chhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhh-hhhHHHHHHhhh
Q 022303           22 ATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIIN-RCKLLQLLYCKL   71 (299)
Q Consensus        22 ~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~-~~~~w~~~~~~~   71 (299)
                      +.+..+|.|+..+|++++++.+.++|..+|+.|+.+++ ...+|+.++...
T Consensus         4 D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~   54 (100)
T d1nexb1           4 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE   54 (100)
T ss_dssp             CHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHT
T ss_pred             CchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            56788999999999999999999999999999999886 568999877654

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00014  Score=48.14  Aligned_cols=50  Identities=26%  Similarity=0.344  Sum_probs=45.3

Q ss_pred             chhccCcH----HHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhh
Q 022303           22 ATIESLNG----DIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKL   71 (299)
Q Consensus        22 ~~~~~~~~----~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~   71 (299)
                      +.+..||.    |+..+|+++|+..++.++..+|+.|+.++.+..+|+.++.+.
T Consensus         9 D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~   62 (118)
T d1p22a1           9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (118)
T ss_dssp             CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             cHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhh
Confidence            56777886    999999999999999999999999999999999999987664

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.17  E-value=0.03  Score=42.98  Aligned_cols=165  Identities=9%  Similarity=-0.006  Sum_probs=99.7

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCceee-eeccCC-c---cceeee
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSV-FPSREG-T---FMKGLC  198 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~-~~~~~~-~---~~~~~~  198 (299)
                      +..+--..+.|..||..+++.. .+..+..+..+++.+++.+++++.+ .+..+|..+++.. +..... .   ...-..
T Consensus        32 l~wvDi~~~~I~r~d~~~g~~~-~~~~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~  109 (295)
T d2ghsa1          32 AWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGR  109 (295)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEE
T ss_pred             EEEEECCCCEEEEEECCCCeEE-EEECCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccceeeE
Confidence            4444446788999999887653 4555566666888899888887664 6889999877532 221111 1   111235


Q ss_pred             eccCCCeEEEec----CCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-C-eEEEEeCCCcEEEEeCCC------Cce
Q 022303          199 MRYFDPEAVVGC----EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGSSLGSIAISGLSS------DQR  266 (299)
Q Consensus       199 ~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~iwd~~~------~~~  266 (299)
                      +.+++...++..    ..+.-.+|.+..++...... .-...+.++++++ + ++++-+..+.|..+++..      ++.
T Consensus       110 vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~  188 (295)
T d2ghsa1         110 MHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKA  188 (295)
T ss_dssp             ECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCC
T ss_pred             ECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccce
Confidence            666666544322    12344566666666544443 2344678999998 5 556667788899888742      111


Q ss_pred             E--EEeeccCCCCcEEEEEccCCCCeEEe
Q 022303          267 V--ATLRSTDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       267 ~--~~~~~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      .  ........  ....++++.+|.+.++
T Consensus       189 ~~~~~~~~~~g--~pdG~~vD~~GnlWva  215 (295)
T d2ghsa1         189 EVFIDSTGIKG--GMDGSVCDAEGHIWNA  215 (295)
T ss_dssp             EEEEECTTSSS--EEEEEEECTTSCEEEE
T ss_pred             EEEeccCcccc--cccceEEcCCCCEEee
Confidence            1  11122222  6778888888876554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.97  E-value=0.028  Score=47.59  Aligned_cols=80  Identities=11%  Similarity=0.013  Sum_probs=50.9

Q ss_pred             CcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCC-eE
Q 022303          213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLH-ML  291 (299)
Q Consensus       213 ~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l  291 (299)
                      |.+.-+|+.+++.+.+...............+.++++|+.||.++.+|.++|+.+.++...... .-.=+.|..||+ |+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~-~a~P~ty~~dGkqYi  522 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG-IGSPMTYSFKGKQYI  522 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCc-eecceEEEECCEEEE
Confidence            4688888888888876642211111111113467888999999999999999999888755431 111144555786 44


Q ss_pred             Ee
Q 022303          292 FF  293 (299)
Q Consensus       292 ~s  293 (299)
                      ++
T Consensus       523 ~v  524 (571)
T d2ad6a1         523 GS  524 (571)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.78  E-value=0.02  Score=48.61  Aligned_cols=75  Identities=11%  Similarity=0.144  Sum_probs=51.7

Q ss_pred             CcEEEEEcCCcceeeeccccCCcee--EEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCC--CcEEEEEccCCC
Q 022303          213 GTARVFDMYSRKCSQIIRMHCAPVT--SLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCT--GHIICLMYPQFL  288 (299)
Q Consensus       213 ~~i~iwd~~~~~~~~~~~~~~~~i~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~i~~~~~s~~g  288 (299)
                      |.+.-||+.+++.+...... .+..  .++. .+.++++|+.||.++.+|.++|+.+.++......  .+   +.|..+|
T Consensus       457 G~l~AiD~~tGk~~W~~~~~-~p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~G  531 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDG  531 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETT
T ss_pred             ccEEEeCCCCCceEeeecCC-CCCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECC
Confidence            57889999999998877532 2221  2222 2367888999999999999999999888765431  13   3445577


Q ss_pred             C-eEE
Q 022303          289 H-MLF  292 (299)
Q Consensus       289 ~-~l~  292 (299)
                      + |++
T Consensus       532 kQYv~  536 (573)
T d1kb0a2         532 RQYVS  536 (573)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            6 443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.77  E-value=0.061  Score=40.13  Aligned_cols=84  Identities=12%  Similarity=-0.014  Sum_probs=51.0

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEc-CC-----eEEEEecCCceee-eeccCC----
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI-GT-----RICIWRRNGLRSV-FPSREG----  191 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~-d~-----~i~v~d~~~~~~~-~~~~~~----  191 (299)
                      .++-. .+|.|.+.|+.+++.......+.......|+|||+.|+ ... ++     .|.+++..++... +....+    
T Consensus        14 ~v~f~-~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~   92 (281)
T d1k32a2          14 RIIFV-CCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTG   92 (281)
T ss_dssp             EEEEE-ETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEET
T ss_pred             EEEEE-eCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccC
Confidence            44433 34568888999888765545555556699999999998 432 22     4778887776422 111110    


Q ss_pred             --ccceeeeeccCCCeEEE
Q 022303          192 --TFMKGLCMRYFDPEAVV  208 (299)
Q Consensus       192 --~~~~~~~~~~~~~~l~s  208 (299)
                        .......|+++++.++.
T Consensus        93 ~~~~~~~~~~spdg~~l~~  111 (281)
T d1k32a2          93 RRMFTDVAGFDPDGNLIIS  111 (281)
T ss_dssp             TEECSEEEEECTTCCEEEE
T ss_pred             ccccccccccCCCCCEEEE
Confidence              11223467777777554

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.67  E-value=0.023  Score=48.29  Aligned_cols=80  Identities=18%  Similarity=0.121  Sum_probs=54.4

Q ss_pred             CCcEEEEEcCCcceeeeccccCCceeEEEeCC-CCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCC-
Q 022303          212 DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLH-  289 (299)
Q Consensus       212 d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-  289 (299)
                      .|.+.-+|+.+++.+.+...+ .++..-.++. +.++++|+.||.++.+|.++|+.+.+++..... .-.=+.+..+|+ 
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~-~~~P~ty~~~G~q  542 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGI-VSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEE
T ss_pred             CCeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCc-cccCEEEEECCEE
Confidence            467889999999998877532 2232211222 367888999999999999999999988765432 111145667885 


Q ss_pred             eEEe
Q 022303          290 MLFF  293 (299)
Q Consensus       290 ~l~s  293 (299)
                      |++.
T Consensus       543 Yv~i  546 (582)
T d1flga_         543 YLGV  546 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.66  E-value=0.052  Score=45.75  Aligned_cols=79  Identities=10%  Similarity=0.114  Sum_probs=51.8

Q ss_pred             CcEEEEEcCCcceeeeccccCCceeEEEeC-CCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCC-e
Q 022303          213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLS-EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLH-M  290 (299)
Q Consensus       213 ~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~  290 (299)
                      |.+.-+|+.+++.+..+.. ..+...-.+. .+.++++|+.||.++.+|.++|+.+.+++..... .-.=+.+..+|+ |
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~-~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGI-VAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCc-cccCEEEEECCEEE
Confidence            5688899999988877642 2222211122 2367888999999999999999999888765432 111134555775 5


Q ss_pred             EEe
Q 022303          291 LFF  293 (299)
Q Consensus       291 l~s  293 (299)
                      ++.
T Consensus       516 v~v  518 (560)
T d1kv9a2         516 VAI  518 (560)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.24  E-value=0.21  Score=40.01  Aligned_cols=163  Identities=10%  Similarity=-0.036  Sum_probs=97.6

Q ss_pred             EEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCC---------------eEEEEec------------------
Q 022303          134 MRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGT---------------RICIWRR------------------  179 (299)
Q Consensus       134 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~---------------~i~v~d~------------------  179 (299)
                      +.++|.++.+....+......-.++++++|++++ .+.+.               .+.+++.                  
T Consensus       175 ~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            6778999988887777665555699999999988 54331               2334433                  


Q ss_pred             -----CCc---eeeeeccCCccceeeeeccCCCeE-EEecCCCcEEEEEcCCcc------------eeeeccccCCceeE
Q 022303          180 -----NGL---RSVFPSREGTFMKGLCMRYFDPEA-VVGCEDGTARVFDMYSRK------------CSQIIRMHCAPVTS  238 (299)
Q Consensus       180 -----~~~---~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~------------~~~~~~~~~~~i~~  238 (299)
                           +..   ........+.....+.++|++.++ +++.-+.++.++|++.-.            ...+.. ..-....
T Consensus       255 ~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLh  333 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLH  333 (459)
T ss_dssp             EEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEE
T ss_pred             eeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc-cCcCccc
Confidence                 211   011111111222346889999994 556679999999987421            111111 1223455


Q ss_pred             EEeCCC-CeEEEEeCCCcEEEEeCCCC----------ceEEEeeccCCCCcEEEE---EccCCCCeEEeeecc
Q 022303          239 LSLSED-QLIISGSSLGSIAISGLSSD----------QRVATLRSTDCTGHIICL---MYPQFLHMLFFLCFL  297 (299)
Q Consensus       239 ~~~~~~-~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~i~~~---~~s~~g~~l~s~s~~  297 (299)
                      -+|+.. .-..+---|..|.-|++...          ..+..+..|-..+.....   ...|+|++|++..-+
T Consensus       334 t~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk~  406 (459)
T d1fwxa2         334 TAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF  406 (459)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred             cccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEeccc
Confidence            567666 44555567999999998532          456666665541111111   357899999998755

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.19  E-value=0.11  Score=43.75  Aligned_cols=131  Identities=8%  Similarity=0.102  Sum_probs=78.8

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCc------------------------------------e-eEEEEecCCCEE
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNA------------------------------------A-SLVDFDFDESKI  166 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------------------~-~~~~~~~~~~~l  166 (299)
                      .++.++.+|.+.++|..+++++...+....                                    . ...+++|+...+
T Consensus       316 ~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~  395 (560)
T d1kv9a2         316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLV  395 (560)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEE
T ss_pred             eeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCee
Confidence            677899999999999999998765432110                                    0 024566666655


Q ss_pred             E-EEc------------------------------------CCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEe
Q 022303          167 V-GLI------------------------------------GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVG  209 (299)
Q Consensus       167 ~-~~~------------------------------------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  209 (299)
                      + -..                                    .|.+.-+|+.+++...+.........-.+.-.+..+++|
T Consensus       396 yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G  475 (560)
T d1kv9a2         396 YIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQG  475 (560)
T ss_dssp             EEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE
T ss_pred             ecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEE
Confidence            4 221                                    145677777777655543322211111233345667789


Q ss_pred             cCCCcEEEEEcCCcceeeeccccCCce-eEEEeC-CC-CeEEEEeCCC
Q 022303          210 CEDGTARVFDMYSRKCSQIIRMHCAPV-TSLSLS-ED-QLIISGSSLG  254 (299)
Q Consensus       210 ~~d~~i~iwd~~~~~~~~~~~~~~~~i-~~~~~~-~~-~~l~~~~~dg  254 (299)
                      +.||.++.+|.++|+.+.++....... .-+.+. .+ +++++....|
T Consensus       476 ~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~g  523 (560)
T d1kv9a2         476 TAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWG  523 (560)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred             CCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCC
Confidence            999999999999999998887322110 112332 34 6776655433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.08  E-value=0.035  Score=41.55  Aligned_cols=92  Identities=11%  Similarity=0.002  Sum_probs=58.9

Q ss_pred             EEecC--CCEEEEEcCCeEEEEecCCceee-eeccCCccceeeeeccCCCeEEEec----CC--CcEEEEEcCCcceeee
Q 022303          158 DFDFD--ESKIVGLIGTRICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGC----ED--GTARVFDMYSRKCSQI  228 (299)
Q Consensus       158 ~~~~~--~~~l~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~----~d--~~i~iwd~~~~~~~~~  228 (299)
                      ..+|+  |+.++...++.|++.|+.+++.. +....+.. ...+|+|+++.|+...    .+  ..|.+++...++..+.
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~Lt~~~~~~-~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTRKIVSNLGVI-NNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSSEE-EEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCEEEEecCCCcc-cCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            35788  99999667788999999987532 33333332 2458999999976432    22  2377778777765443


Q ss_pred             cc------ccCCceeEEEeCCC-CeEEEE
Q 022303          229 IR------MHCAPVTSLSLSED-QLIISG  250 (299)
Q Consensus       229 ~~------~~~~~i~~~~~~~~-~~l~~~  250 (299)
                      ..      ..........|+|+ +.|+..
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             eecCCCccCccccccccccCCCCCEEEEE
Confidence            21      11234567889998 766654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.01  E-value=0.2  Score=37.94  Aligned_cols=52  Identities=13%  Similarity=0.123  Sum_probs=39.9

Q ss_pred             CCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccC
Q 022303          233 CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQ  286 (299)
Q Consensus       233 ~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  286 (299)
                      .+...++..++. ..+..-+.-|.|++||+.++.++..-+...+  +|..-+-+.
T Consensus       255 ~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~--~iF~~a~~~  307 (327)
T d1utca2         255 NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHE  307 (327)
T ss_dssp             TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEET
T ss_pred             CCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCC--ceEEeccCC
Confidence            455667888877 8888889999999999999999887776666  555444333

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.01  E-value=0.072  Score=44.97  Aligned_cols=80  Identities=15%  Similarity=0.001  Sum_probs=44.9

Q ss_pred             eEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCC-ceeEEEeC-CC-CeEEE
Q 022303          173 RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA-PVTSLSLS-ED-QLIIS  249 (299)
Q Consensus       173 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~i~~~~~~-~~-~~l~~  249 (299)
                      .+.-+|+.+++...+.........-.+...+..+++|+.|+.++.+|.++|+.+.++..... .-.-+.|. .+ +++++
T Consensus       445 ~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         445 QIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEE
Confidence            45566666665444332221111111222355677899999999999999999988863211 11113333 34 67766


Q ss_pred             EeC
Q 022303          250 GSS  252 (299)
Q Consensus       250 ~~~  252 (299)
                      ...
T Consensus       525 ~~g  527 (571)
T d2ad6a1         525 MYG  527 (571)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.84  E-value=0.14  Score=43.43  Aligned_cols=76  Identities=8%  Similarity=0.058  Sum_probs=51.1

Q ss_pred             CcEEEEEcCCcceeeeccccCCceeEEEeC-CCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCC--CcEEEEEccCCCC
Q 022303          213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLS-EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCT--GHIICLMYPQFLH  289 (299)
Q Consensus       213 ~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~i~~~~~s~~g~  289 (299)
                      |.+.-||+.+++.+..... ..++.+-.++ .+.+++.|+.||.++.+|.++|+.+.++......  .++   .+..+|+
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~---tY~~dGk  528 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPM---TYTHKGT  528 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE---EEEETTE
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCe---EEEECCE
Confidence            6789999999998776532 2222221122 2367888999999999999999999888755431  133   3445775


Q ss_pred             -eEE
Q 022303          290 -MLF  292 (299)
Q Consensus       290 -~l~  292 (299)
                       |++
T Consensus       529 QYva  532 (596)
T d1w6sa_         529 QYVA  532 (596)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence             444

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.29  Score=36.55  Aligned_cols=161  Identities=13%  Similarity=0.124  Sum_probs=96.2

Q ss_pred             CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EE-cCCeEEEEecCCce-----eeeeccCCccceeeeeccCCC
Q 022303          132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICIWRRNGLR-----SVFPSREGTFMKGLCMRYFDP  204 (299)
Q Consensus       132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~  204 (299)
                      ..|+..++.+.+....+.....++.++|++..+.+. +. ..+.|.-.++....     .............+++.+.+.
T Consensus        10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence            357778888766555555566677799999888887 43 45667766665321     111111112222467777777


Q ss_pred             eEEE-ecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEe--CCCcEEEEeCCCCceEEEeeccCCCCcEE
Q 022303          205 EAVV-GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS--SLGSIAISGLSSDQRVATLRSTDCTGHII  280 (299)
Q Consensus       205 ~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~i~  280 (299)
                      .|+. -...+.|.+.++...............+..++++|. .+|....  ..+.|.-.++. |.....+-..... ...
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d-Gs~~~~l~~~~~~-~p~  167 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQ-WPN  167 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCS-CEE
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccC-CCceecccccccc-eee
Confidence            7554 456678999998855544444444566889999986 5554443  34567667765 3333333322211 678


Q ss_pred             EEEccCCCCeEEee
Q 022303          281 CLMYPQFLHMLFFL  294 (299)
Q Consensus       281 ~~~~s~~g~~l~s~  294 (299)
                      ++++++.++.|.-+
T Consensus       168 gl~iD~~~~~lYw~  181 (266)
T d1ijqa1         168 GITLDLLSGRLYWV  181 (266)
T ss_dssp             EEEEETTTTEEEEE
T ss_pred             EEEeeccccEEEEe
Confidence            89998877766544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.48  E-value=0.32  Score=36.25  Aligned_cols=173  Identities=9%  Similarity=0.023  Sum_probs=103.2

Q ss_pred             cCeeEEEe--cCCEEE-EEeCCCcEEEEecCCceeEEEecC-CCceeEEEEecCCCEEE-EEcC---CeEEEEecCCce-
Q 022303          113 VGVDQCRM--KRGLIL-TGVGDKVMRLWSLEGYKCVEEYSL-PNAASLVDFDFDESKIV-GLIG---TRICIWRRNGLR-  183 (299)
Q Consensus       113 ~~i~~~~~--~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~-~~~d---~~i~v~d~~~~~-  183 (299)
                      ..+..+++  ..+.|+ +-...+.|.+.++........+.. ...+..++++|...+++ ...+   ..|.--++.+.. 
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~  158 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence            45666766  355444 555667999999875543333332 24555699999888887 4332   235555665543 


Q ss_pred             eeeeccCCccceeeeeccCCCeEEEe-cCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022303          184 SVFPSREGTFMKGLCMRYFDPEAVVG-CEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLS  262 (299)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~  262 (299)
                      ..+....-.....+++.+.++.|+.. ...+.|...|+........+.+. ....+|++..+.++.+-...+.|...|..
T Consensus       159 ~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~-~~P~~lav~~~~lYwtd~~~~~I~~~~~~  237 (263)
T d1npea_         159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSYGKNLYYTDWKTNSVIAMDLA  237 (263)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCC-CCcEEEEEECCEEEEEECCCCEEEEEECC
Confidence            22221111222356777777776544 56778988888754433333332 33567888755656666678889999999


Q ss_pred             CCceEEEeeccCCCCcEEEEEccCC
Q 022303          263 SDQRVATLRSTDCTGHIICLMYPQF  287 (299)
Q Consensus       263 ~~~~~~~~~~~~~~~~i~~~~~s~~  287 (299)
                      +++.+..+...... ...+++..++
T Consensus       238 ~g~~~~~~~~~~~~-~~~gi~v~~~  261 (263)
T d1npea_         238 ISKEMDTFHPHKQT-RLYGITIALS  261 (263)
T ss_dssp             TTEEEEEECCSSCC-CCCCEEEECS
T ss_pred             CCccceEECCCCCC-CcceEEEeCC
Confidence            89888777544432 4455555443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.87  Score=33.77  Aligned_cols=161  Identities=12%  Similarity=0.030  Sum_probs=97.4

Q ss_pred             cCeeEEEe--cCC-EEEEEeCCCcEEEEecCCceeEEEecC-CCceeEEEEecCCCEEE-EE--cCCeEEEEecCCce-e
Q 022303          113 VGVDQCRM--KRG-LILTGVGDKVMRLWSLEGYKCVEEYSL-PNAASLVDFDFDESKIV-GL--IGTRICIWRRNGLR-S  184 (299)
Q Consensus       113 ~~i~~~~~--~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~-~~--~d~~i~v~d~~~~~-~  184 (299)
                      ..+..+++  ..+ +..+-...+.|.+.++........+.. ...+..++++|...++. ..  ..+.|.-.++.+.. .
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~  156 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  156 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence            34455655  355 444555667899999886554443443 34556699999777776 43  33467777776543 2


Q ss_pred             eeeccCCccceeeeeccCCCeEEEe-cCCCcEEEEEcCCcceeeec--cccCCceeEEEeCCCCeEEEEeCCCcEEEEeC
Q 022303          185 VFPSREGTFMKGLCMRYFDPEAVVG-CEDGTARVFDMYSRKCSQII--RMHCAPVTSLSLSEDQLIISGSSLGSIAISGL  261 (299)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~  261 (299)
                      .+....-.....+++.+.+..|+.+ ...+.|...|+.........  ........++++..+.++.+-..++.|.-.+.
T Consensus       157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~  236 (266)
T d1ijqa1         157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR  236 (266)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEEC
Confidence            2222221222356788777775554 55678888888643322222  22223466788876666666667888988888


Q ss_pred             CCCceEEEeecc
Q 022303          262 SSDQRVATLRST  273 (299)
Q Consensus       262 ~~~~~~~~~~~~  273 (299)
                      .+++....+...
T Consensus       237 ~~g~~~~~~~~~  248 (266)
T d1ijqa1         237 LTGSDVNLLAEN  248 (266)
T ss_dssp             TTCCCCEEEECS
T ss_pred             CCCcceEEEEcC
Confidence            888766666544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.55  E-value=1.1  Score=33.90  Aligned_cols=120  Identities=11%  Similarity=0.001  Sum_probs=80.7

Q ss_pred             eEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeC
Q 022303          173 RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSS  252 (299)
Q Consensus       173 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~  252 (299)
                      ++.+.|+.++......+-....  .-++|..+-++.-+ ...+.++|+++.+.+..+.- ..+|.-=.|-.++.|+-.+ 
T Consensus        46 ~VvIidl~n~~~~~Rrpi~Ads--AIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lVT-  120 (327)
T d1utca2          46 QVVIIDMNDPSNPIRRPISADS--AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-  120 (327)
T ss_dssp             EEEEEETTSTTSCEEEECCCSE--EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSSEEEEEC-
T ss_pred             eEEEEECCCCCcceecccchhh--hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCCEEEEEc-
Confidence            7778888766533333222222  24677777665544 56899999999999888854 4456666676665666655 


Q ss_pred             CCcEEEEeCCC-CceEEEeeccCC--CCcEEEEEccCCCCeEEeeecc
Q 022303          253 LGSIAISGLSS-DQRVATLRSTDC--TGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       253 dg~i~iwd~~~-~~~~~~~~~~~~--~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      +..|+=|++.. .++.+.+..|..  .+.|..-..++++++++..+..
T Consensus       121 ~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~  168 (327)
T d1utca2         121 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGIS  168 (327)
T ss_dssp             SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEE
T ss_pred             CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEe
Confidence            45699999953 356666665543  2378888999999999887653

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.32  E-value=1.4  Score=34.56  Aligned_cols=135  Identities=12%  Similarity=0.100  Sum_probs=80.5

Q ss_pred             EEEEecCCCEEEEEcCCeEEEEecCCceeeee--------ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceee
Q 022303          156 LVDFDFDESKIVGLIGTRICIWRRNGLRSVFP--------SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ  227 (299)
Q Consensus       156 ~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  227 (299)
                      .+++++...+++++....+.|..+..-+..+.        .....+..+..++++++.++.. .++.+..++..+-....
T Consensus        41 LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d~l~v~-~~~~l~~~~~~~l~~~~  119 (381)
T d1xipa_          41 NLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGDQVLVS-TRNALYSLDLEELSEFR  119 (381)
T ss_dssp             CEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETTEEEEE-ESSEEEEEESSSTTCEE
T ss_pred             eEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCCEEEEE-eCCCEEEEEeecccccc
Confidence            38888887788744444677776432110000        0000111234455556665554 45567778776544333


Q ss_pred             eccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEe------eccCCCCcEEEEEccCCCCeEEeee
Q 022303          228 IIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATL------RSTDCTGHIICLMYPQFLHMLFFLC  295 (299)
Q Consensus       228 ~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~~~i~~~~~s~~g~~l~s~s  295 (299)
                      ....-..++..+.++|. .++....++.+.++++..++.....      ... .  .+.+++|++.|+.++++.
T Consensus       120 ~~~~~~~~~~~~~~~p~-~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~-~--~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         120 TVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVT-N--SQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             EEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEESEEEEEEC-S--SEEEEEETTSCEEEEEEE
T ss_pred             ccccccccccceecCCc-eeEEEecCCCEEEEEeccCccccccCCcceEEec-C--CceEEEEeCCcEEEEEeC
Confidence            33334566888887776 4556666899999999887543222      122 2  689999999999888764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.21  E-value=2  Score=35.99  Aligned_cols=148  Identities=11%  Similarity=-0.016  Sum_probs=88.5

Q ss_pred             EEEEEeCCCcEEEEecCCceeEEEecCCCc-----eeEEEEecCCCEEEEEc------CCeEEEEecCCceeeeeccCCc
Q 022303          124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-----ASLVDFDFDESKIVGLI------GTRICIWRRNGLRSVFPSREGT  192 (299)
Q Consensus       124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~------d~~i~v~d~~~~~~~~~~~~~~  192 (299)
                      .++.++.|+.|.-.|.++|+.+..+...+.     ...--.-.++..+++..      .|.|+-+|..+++....-+...
T Consensus       123 ~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~  202 (596)
T d1w6sa_         123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG  202 (596)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred             EEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccC
Confidence            688999999999999999999988763221     11100111444455432      4899999999987554321100


Q ss_pred             ---------------------------------------cceeeeeccCCCeEEEecC----------------CCcEEE
Q 022303          193 ---------------------------------------FMKGLCMRYFDPEAVVGCE----------------DGTARV  217 (299)
Q Consensus       193 ---------------------------------------~~~~~~~~~~~~~l~s~~~----------------d~~i~i  217 (299)
                                                             .-...++.+....++.+..                ...+.-
T Consensus       203 ~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivA  282 (596)
T d1w6sa_         203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG  282 (596)
T ss_dssp             CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred             CccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccc
Confidence                                                   0001122233333333322                344778


Q ss_pred             EEcCCcceeeeccc--cC-------CceeEEEe--CCC---CeEEEEeCCCcEEEEeCCCCceEEEee
Q 022303          218 FDMYSRKCSQIIRM--HC-------APVTSLSL--SED---QLIISGSSLGSIAISGLSSDQRVATLR  271 (299)
Q Consensus       218 wd~~~~~~~~~~~~--~~-------~~i~~~~~--~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~  271 (299)
                      .|+++++.+..++.  |.       ..+.-+..  .+.   ..++.+..+|.+.++|..+|+++...+
T Consensus       283 lD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~  350 (596)
T d1w6sa_         283 RDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (596)
T ss_dssp             EETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecc
Confidence            89999999877752  21       11111111  122   468889999999999999999886543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.09  E-value=1.2  Score=32.98  Aligned_cols=180  Identities=9%  Similarity=-0.008  Sum_probs=102.2

Q ss_pred             eccccCeeEEEe--cCCEEE-EEeCCCcEEEEecCCceeEEEecCC-CceeEEEEecCCCEEE-EE-cCCeEEEEecCCc
Q 022303          109 KAHSVGVDQCRM--KRGLIL-TGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GL-IGTRICIWRRNGL  182 (299)
Q Consensus       109 ~~h~~~i~~~~~--~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~  182 (299)
                      ..+...+..++|  .++.++ +-..++.|+..++........+... ..+..++++.-+..|. +. ..+.|.+.++.+.
T Consensus        32 ~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~  111 (263)
T d1npea_          32 HIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT  111 (263)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCc
Confidence            344455677777  344444 4456678888888765544444332 3455688988777776 43 4679999998866


Q ss_pred             ee-eeeccCCccceeeeeccCCCeEEEec-C--CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeE-EEEeCCCcE
Q 022303          183 RS-VFPSREGTFMKGLCMRYFDPEAVVGC-E--DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI-ISGSSLGSI  256 (299)
Q Consensus       183 ~~-~~~~~~~~~~~~~~~~~~~~~l~s~~-~--d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l-~~~~~dg~i  256 (299)
                      .. .+....-.....+++.|...+++... .  ...|..-++............-..+..+++++. +.| .+-...+.|
T Consensus       112 ~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I  191 (263)
T d1npea_         112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA  191 (263)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEE
Confidence            42 22222212233467777777755332 2  223444455533222222223345788999876 545 444567889


Q ss_pred             EEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022303          257 AISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFF  293 (299)
Q Consensus       257 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s  293 (299)
                      ...|+........+.+..   ...+|++.  +.+|..
T Consensus       192 ~~~~~~g~~~~~v~~~~~---~P~~lav~--~~~lYw  223 (263)
T d1npea_         192 ECLNPAQPGRRKVLEGLQ---YPFAVTSY--GKNLYY  223 (263)
T ss_dssp             EEEETTEEEEEEEEECCC---SEEEEEEE--TTEEEE
T ss_pred             EEEECCCCCeEEEECCCC---CcEEEEEE--CCEEEE
Confidence            999996544433333333   34677775  344443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.16  E-value=2.5  Score=32.51  Aligned_cols=84  Identities=11%  Similarity=0.054  Sum_probs=46.9

Q ss_pred             CCCcEEEEEcCCcce-e---eecc-ccCCceeEEEeCCC-CeEEEEeC---------------CCcEEEEeCCCCceEEE
Q 022303          211 EDGTARVFDMYSRKC-S---QIIR-MHCAPVTSLSLSED-QLIISGSS---------------LGSIAISGLSSDQRVAT  269 (299)
Q Consensus       211 ~d~~i~iwd~~~~~~-~---~~~~-~~~~~i~~~~~~~~-~~l~~~~~---------------dg~i~iwd~~~~~~~~~  269 (299)
                      ...+|.+|++..... +   .++. ......+++++..+ .+++|-..               -+.-.+|....++....
T Consensus       122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~  201 (340)
T d1v04a_         122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV  201 (340)
T ss_dssp             TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEE
T ss_pred             CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEE
Confidence            455677777754322 1   1121 12234678877766 77777321               12334444444443222


Q ss_pred             eeccCCCCcEEEEEccCCCCeEEeeecc
Q 022303          270 LRSTDCTGHIICLMYPQFLHMLFFLCFL  297 (299)
Q Consensus       270 ~~~~~~~~~i~~~~~s~~g~~l~s~s~~  297 (299)
                      ..+- .  ..+.++++||+++|+.+...
T Consensus       202 ~~~l-~--~pNGI~~s~d~~~lyVa~t~  226 (340)
T d1v04a_         202 AEGF-D--FANGINISPDGKYVYIAELL  226 (340)
T ss_dssp             EEEE-S--SEEEEEECTTSSEEEEEEGG
T ss_pred             cCCC-C--ccceeEECCCCCEEEEEeCC
Confidence            2322 2  68999999999998887643

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=90.56  E-value=0.87  Score=35.41  Aligned_cols=81  Identities=11%  Similarity=0.025  Sum_probs=48.8

Q ss_pred             EEEEEcCCcceee--ecc-ccCCceeEEEeCCC-CeEEEEeCC-CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCC
Q 022303          215 ARVFDMYSRKCSQ--IIR-MHCAPVTSLSLSED-QLIISGSSL-GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLH  289 (299)
Q Consensus       215 i~iwd~~~~~~~~--~~~-~~~~~i~~~~~~~~-~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  289 (299)
                      +.+||+.+++-..  ... .+.......++.++ ++++.|+.+ ..+.+||..+..-...-...... .-.+++..+||+
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~~~dG~  132 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGR  132 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECTTSC
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccc-cccceeeecCCc
Confidence            6689998765322  111 23333345567777 778877654 58999999876543221111111 234567778999


Q ss_pred             eEEeeec
Q 022303          290 MLFFLCF  296 (299)
Q Consensus       290 ~l~s~s~  296 (299)
                      +++.|+.
T Consensus       133 v~v~GG~  139 (387)
T d1k3ia3         133 VFTIGGS  139 (387)
T ss_dssp             EEEECCC
T ss_pred             eeeeccc
Confidence            9888864

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.29  E-value=0.58  Score=39.30  Aligned_cols=59  Identities=15%  Similarity=0.053  Sum_probs=39.2

Q ss_pred             CeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc
Q 022303          172 TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR  230 (299)
Q Consensus       172 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  230 (299)
                      |.+.-+|+.+++...+.........-.++..+..+++|+.||.++.+|.++|+.+.+++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~  524 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence            45667777777655443322211111233445567789999999999999999998887

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=90.05  E-value=3.2  Score=31.93  Aligned_cols=92  Identities=17%  Similarity=0.165  Sum_probs=53.8

Q ss_pred             eEEEEecCCcee----eeeccCCccceeeeeccCCCeEEEecCC-CcEEEEEcCCcceee--eccccCCceeEEEeCCC-
Q 022303          173 RICIWRRNGLRS----VFPSREGTFMKGLCMRYFDPEAVVGCED-GTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSED-  244 (299)
Q Consensus       173 ~i~v~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~-  244 (299)
                      .+.+||..+..-    .............++..++..++.|+.+ ..+.+||..+..-..  ....... -..++..+| 
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~-~~~~~~~~dG  131 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARG-YQSSATMSDG  131 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCS-SCEEEECTTS
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCccccccccccccc-ccceeeecCC
Confidence            477899987641    1122222222234566777777777654 579999998754322  2212122 234455566 


Q ss_pred             CeEEEEeCC------CcEEEEeCCCCc
Q 022303          245 QLIISGSSL------GSIAISGLSSDQ  265 (299)
Q Consensus       245 ~~l~~~~~d------g~i~iwd~~~~~  265 (299)
                      ++++.|+.+      ..+.+||..+.+
T Consensus       132 ~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         132 RVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             CEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ceeeeccccccccccceeeeecCCCCc
Confidence            888887753      368999987654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.25  E-value=3.1  Score=32.98  Aligned_cols=97  Identities=8%  Similarity=-0.046  Sum_probs=58.2

Q ss_pred             eeeccCCCeEE-E----ecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCC----------------C
Q 022303          197 LCMRYFDPEAV-V----GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL----------------G  254 (299)
Q Consensus       197 ~~~~~~~~~l~-s----~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d----------------g  254 (299)
                      .+++|++.+++ +    |++.-.++++|+.+++.+..... ......++|.+| +.|+....+                .
T Consensus       130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~  208 (430)
T d1qfma1         130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ  208 (430)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred             eEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccccCCcc
Confidence            35667776644 2    22334589999999987653211 122356889988 655544322                2


Q ss_pred             cEEEEeCCCCce--EEEeeccCCCCcEEEEEccCCCCeEEee
Q 022303          255 SIAISGLSSDQR--VATLRSTDCTGHIICLMYPQFLHMLFFL  294 (299)
Q Consensus       255 ~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~g~~l~s~  294 (299)
                      .|..+.+.+...  ...+........+..+..++++++++..
T Consensus       209 ~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         209 KLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             eEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence            578888876532  3333333322257778889999998754

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=88.65  E-value=4.2  Score=31.37  Aligned_cols=130  Identities=12%  Similarity=0.118  Sum_probs=70.1

Q ss_pred             cCCCEEE-EEcCCeEEEEecCCceeeeeccCCcccee---eeeccCCCe--EEEec--CC--CcEEEEEcCC-cceeeec
Q 022303          161 FDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKG---LCMRYFDPE--AVVGC--ED--GTARVFDMYS-RKCSQII  229 (299)
Q Consensus       161 ~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~--l~s~~--~d--~~i~iwd~~~-~~~~~~~  229 (299)
                      |+..+++ ....+-+++||+...+..+. ..+....+   ..+...+..  ++.++  .+  ..|.+|.+.. ...+..+
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~G~~l~~~-~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLEGKMLHSY-HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETTCCEEEEC-CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             cCccEEEEEcCcCCEEEEcCCCcEEEec-ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            4455666 55556799999876543322 22333222   111122222  44444  22  3577777652 2233333


Q ss_pred             ccc-------CCceeEEEe--CCC--C-eEEEEeCCCcEEEEeCC---CC----ceEEEeeccCCCCcEEEEEccCCCCe
Q 022303          230 RMH-------CAPVTSLSL--SED--Q-LIISGSSLGSIAISGLS---SD----QRVATLRSTDCTGHIICLMYPQFLHM  290 (299)
Q Consensus       230 ~~~-------~~~i~~~~~--~~~--~-~l~~~~~dg~i~iwd~~---~~----~~~~~~~~~~~~~~i~~~~~s~~g~~  290 (299)
                      ...       ...+..+++  ++.  . ++++...+|.+..|.+.   .+    +.++++....   .+-+|.+++....
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~---q~EGCVvDde~~~  193 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNS---QTEGMAADDEYGS  193 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSS---CEEEEEEETTTTE
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCC---ccceEEEeCCCCc
Confidence            211       123566666  554  2 56777789999888763   23    3455555443   6888888887777


Q ss_pred             EEee
Q 022303          291 LFFL  294 (299)
Q Consensus       291 l~s~  294 (299)
                      |+.+
T Consensus       194 Lyis  197 (353)
T d1h6la_         194 LYIA  197 (353)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.39  E-value=4.1  Score=32.27  Aligned_cols=93  Identities=10%  Similarity=0.023  Sum_probs=55.1

Q ss_pred             EEEecCCCEEE-E-EcCC----eEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecC----------------CCc
Q 022303          157 VDFDFDESKIV-G-LIGT----RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE----------------DGT  214 (299)
Q Consensus       157 ~~~~~~~~~l~-~-~~d~----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----------------d~~  214 (299)
                      .+++|++++++ + +.+|    .++++|+.+++.+-..........++|..++..|+-...                ...
T Consensus       130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~  209 (430)
T d1qfma1         130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK  209 (430)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred             eEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcce
Confidence            67899999988 3 3344    899999999874432222221124578888887543221                235


Q ss_pred             EEEEEcCCcce--eeeccc--cCCceeEEEeCCC-CeEEE
Q 022303          215 ARVFDMYSRKC--SQIIRM--HCAPVTSLSLSED-QLIIS  249 (299)
Q Consensus       215 i~iwd~~~~~~--~~~~~~--~~~~i~~~~~~~~-~~l~~  249 (299)
                      +..+.+.+...  ...+..  ....+..+..+++ ++++.
T Consensus       210 v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         210 LYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             EEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence            77777776432  222222  2334566777777 66543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=88.01  E-value=1.3  Score=37.05  Aligned_cols=59  Identities=10%  Similarity=0.105  Sum_probs=42.4

Q ss_pred             CeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc
Q 022303          172 TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR  230 (299)
Q Consensus       172 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  230 (299)
                      |.+.-||+.+++.............-.+...+..+++|+.|+.++.+|.++|+.+.++.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            46888899888766554433221111334456678889999999999999999998886

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.30  E-value=4.8  Score=28.64  Aligned_cols=34  Identities=24%  Similarity=0.244  Sum_probs=24.5

Q ss_pred             ceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEe
Q 022303          235 PVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATL  270 (299)
Q Consensus       235 ~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~  270 (299)
                      .|+-+-+.|+ ++++.+-.||.=++|.  +|+.+.+.
T Consensus       239 ~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~p  273 (313)
T d2hu7a1         239 AITWLGYLPDGRLAVVARREGRSAVFI--DGERVEAP  273 (313)
T ss_dssp             EEEEEEECTTSCEEEEEEETTEEEEEE--TTEEECCC
T ss_pred             EEEeeeeCCCCcEEEEEecCCchheee--cceEecCC
Confidence            3555668898 7878899999999987  35554433

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.84  E-value=7.3  Score=30.31  Aligned_cols=129  Identities=12%  Similarity=0.103  Sum_probs=71.0

Q ss_pred             eeEEEe--cCCEEEEEeCCCcEEEEecCC-----------ceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCC
Q 022303          115 VDQCRM--KRGLILTGVGDKVMRLWSLEG-----------YKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNG  181 (299)
Q Consensus       115 i~~~~~--~~~~l~s~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~  181 (299)
                      .+-++.  ..++++.|+.++ ++|-.++.           .........+ .+..++|+.+  .++...++.+..++...
T Consensus        39 ~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip-~v~~vafs~d--~l~v~~~~~l~~~~~~~  114 (381)
T d1xipa_          39 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIP-DVIFVCFHGD--QVLVSTRNALYSLDLEE  114 (381)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECT-TEEEEEEETT--EEEEEESSEEEEEESSS
T ss_pred             cceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCC-CeEEEEeeCC--EEEEEeCCCEEEEEeec
Confidence            344555  345888888775 45655321           1111111122 3445788644  56666777888888775


Q ss_pred             ceeeee--ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc-----ccCCceeEEEeCCC-CeEEEE
Q 022303          182 LRSVFP--SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-----MHCAPVTSLSLSED-QLIISG  250 (299)
Q Consensus       182 ~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~~~~-~~l~~~  250 (299)
                      -.....  .....   ...+.+....++....++.+.++++..++......     ...+.+.++.|++. ..++++
T Consensus       115 l~~~~~~~~~~~~---~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~  188 (381)
T d1xipa_         115 LSEFRTVTSFEKP---VFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAW  188 (381)
T ss_dssp             TTCEEEEEECSSC---EEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred             ccccccccccccc---ccceecCCceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEe
Confidence            432211  11222   23444555667777778999999998775432211     12344666777666 445554